BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780694|ref|YP_003065107.1| probable transcriptional
regulator protein, LuxR family [Candidatus Liberibacter asiaticus str.
psy62]
         (246 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 246

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH
Sbjct: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI
Sbjct: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW
Sbjct: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA
Sbjct: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240

Query: 241 VRNNIV 246
           VRNNIV
Sbjct: 241 VRNNIV 246


>gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 246

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 224/246 (91%), Positives = 234/246 (95%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNFE+QQVNIVLNREDEQRTS VSHLPTRSDLLARMIPLD TVS  MRMYALTEYVGASH
Sbjct: 1   MNFEMQQVNIVLNREDEQRTSIVSHLPTRSDLLARMIPLDRTVSSKMRMYALTEYVGASH 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           FLLVRWDLFQEQKLDS+VSSDWPFDLVRCM LSEKDKYYNVLQRP ELFCPVFH LPENI
Sbjct: 61  FLLVRWDLFQEQKLDSVVSSDWPFDLVRCMTLSEKDKYYNVLQRPAELFCPVFHILPENI 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
             P+GMDNRYC+LTFDV RIRIGLMLLFPKGRI+ +DRLWEIGLLAAYQANMFK+Y+VH 
Sbjct: 121 DLPSGMDNRYCALTFDVGRIRIGLMLLFPKGRIVSQDRLWEIGLLAAYQANMFKNYNVHL 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKDFELTGRE+ECLTWISEGKTSDEIAVILGISRNT+NNYIASIMRKTATKTRSGAIAYA
Sbjct: 181 GKDFELTGREIECLTWISEGKTSDEIAVILGISRNTINNYIASIMRKTATKTRSGAIAYA 240

Query: 241 VRNNIV 246
           VRNNIV
Sbjct: 241 VRNNIV 246


>gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 120/229 (52%), Positives = 155/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R +LL R+  +  T      + ALT+YVGAS++LL R DL QE  LD IVS
Sbjct: 20  SAAVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASYYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A            L++  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/229 (52%), Positives = 154/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R  LL R+  +  T      + ALTEYVGASH+LL R DL QE  LD IVS
Sbjct: 20  SAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A            L++  ++F P F  +P++   P G   +YCS+TF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDSADVPDGASRQYCSVTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/229 (52%), Positives = 154/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++    L  R +L+ R+  +  T      + ALTEYVGASH+LL R DL QE  LD +VS
Sbjct: 20  SAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYVGASHYLLARCDLIQESGLDFVVS 79

Query: 80  SDWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLV+ +A            L++  ++F P F  LPE+   P G   +YCSLTF+V
Sbjct: 80  SDWPFDLVKDIANDLVSGYARSTELEKCMQVFQPNFALLPESAAVPEGASRQYCSLTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDRDFELTDRELECLFWI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 121/229 (52%), Positives = 154/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R  LL R+  +  +      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 20  SAVVPDLLPRDKLLQRLHGVTSSGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A            L+R  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELERCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWI 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248


>gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 262

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 121/229 (52%), Positives = 155/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R +LL R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 34  SAVVPDLLPRDELLQRLHGVASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 93

Query: 80  SDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A            L++  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 94  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 153

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 154 GRSRLSLMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262


>gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae]
          Length = 262

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 121/229 (52%), Positives = 155/229 (67%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V  L  R +LL R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 34  SAVVPDLLPRDELLLRLHGVASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDFIVS 93

Query: 80  SDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A            L++  ++F P F  LP++   P G   +YCS+TF+V
Sbjct: 94  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALLPDSAEVPDGASRQYCSVTFNV 153

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 154 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262


>gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/229 (52%), Positives = 152/229 (66%), Gaps = 2/229 (0%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           +     L  R +L+ R+  +  T      + ALT+YVGASH+LL R DL QE  LD IVS
Sbjct: 6   SVVAPALLPRDELVRRLHGVADTGRLQSGLRALTDYVGASHYLLARCDLIQESGLDFIVS 65

Query: 80  SDWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A            L++  ++F P F  LPE    P G   +YCSLTF+V
Sbjct: 66  SDWPFDLVRDIANDLVSTYARSTELEKCMQVFQPNFALLPEGADVPEGASRQYCSLTFNV 125

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE+ECL WI
Sbjct: 126 GRSRLALMFLFGEGFILSPERLRDVGLLAGYIASFLRCGGAKVDRDFELTDRELECLFWI 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 186 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234


>gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 257

 Score =  183 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 20/253 (7%)

Query: 13  NREDEQRTSFVSH--LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
            R  +  T+ ++   LP   D  + +  L+        M  +T   G   FL+       
Sbjct: 5   ARMQDTMTTGMTDVELPRGGDFASEIAKLETQFDIIRYMRRITHIFGFKTFLICSIPPID 64

Query: 71  EQKLDSI-VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-------- 121
            ++L +  V S+ P +L+         ++   ++R  E   P   TL +  +        
Sbjct: 65  MERLSAATVISNMPAELLNKYDSLSMLRFSTGVRRLRETTTPFQITLEDWESEGGTPDSA 124

Query: 122 -------PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                     G+         D    R  ++L+ P+  + +   + E+ ++A +  N   
Sbjct: 125 ADYIVMLRENGIFQANYFPVHDAEGGRGAVILMGPEADLPMTAAM-ELQMIAIHVYNRLA 183

Query: 175 SYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                W      L+ RE++CL+W + GKTS EIA ILG+S +TVN+Y+  + +K     R
Sbjct: 184 EIGSVWKSSSTTLSEREIQCLSWTAAGKTSAEIAGILGLSEHTVNHYLNHVTKKLDAVNR 243

Query: 234 SGAIAYAVRNNIV 246
           + A+  A++   +
Sbjct: 244 TQAVVKAMKKGYI 256


>gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 277

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 100/239 (41%), Gaps = 18/239 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWP 83
            LP   D  + +  L+        M  +T+  G   FL+      + ++L +  V S+ P
Sbjct: 39  DLPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMP 98

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE---------------NITPPAGMDN 128
            +L+         ++   ++R  E   P    L +                +    G+  
Sbjct: 99  AELLNKYDSLSMLRFSTGVRRLRETTTPFQVMLEDWEREGGKPDSAADYIAMLRENGIFQ 158

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELT 187
                  D    R  ++L+ P+  + +   + E+ ++A +  N        W   +  L+
Sbjct: 159 ANYFPVHDAEGGRGAVILMGPEAELPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVLS 217

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++CL+W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 218 EREIQCLSWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276


>gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 286

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 18/239 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWP 83
            LP   D  + +  L+        M  +T+  G   FL+      + ++L +  V S+ P
Sbjct: 48  DLPRGGDFASEIARLETQFDIIRYMRRITQIFGFKTFLICSIPAVEVERLSATTVISNMP 107

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE---------------NITPPAGMDN 128
            +L+         ++   ++R  E   P    L +                +    G+  
Sbjct: 108 AELLNKYDSLSMLRFSTGVRRLRETTTPFQILLEDWEKEGGKPDAAADYFAMLRENGLLQ 167

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELT 187
                  D    R  ++L+ P+  + +   + E+ ++A +  N        W   +  L+
Sbjct: 168 ANYFPVHDAEGGRGAVILMGPEAGLPMTAAM-ELQMIAIHVYNRLAEIGSVWKNTNTVLS 226

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++CL W + GKTS EIA ILG+S +TVN+Y+  + +K     R+ A+  A++   +
Sbjct: 227 EREIQCLNWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285


>gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  178 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 120/248 (48%), Positives = 161/248 (64%), Gaps = 5/248 (2%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +I Q +     + + R +  S   +R  L+ ++  +         +  LT+YVGASH
Sbjct: 1   MDMQISQAS---KGDKDARAAAPSSAMSRDQLILQLTAVAGPAYLQSGLRVLTDYVGASH 57

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPE 118
           +LL R DL QE  LD +VSSDWPFDLVR +A            L++   LF PVF  LP+
Sbjct: 58  YLLARCDLIQESGLDFVVSSDWPFDLVRRLASELTNGYGRAGELEKSMSLFQPVFAFLPD 117

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           ++ PP G+   YC+LTF+V R R  LMLL     ++  +RL ++GLLA Y A+  +S + 
Sbjct: 118 DVEPPEGVSRHYCALTFNVGRTRFSLMLLARDSLLLSPERLRDVGLLAGYFASFTRSVEG 177

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DF+LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA
Sbjct: 178 KLERDFDLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA 237

Query: 239 YAVRNNIV 246
           +AVRNN+V
Sbjct: 238 FAVRNNLV 245


>gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 112/246 (45%), Positives = 156/246 (63%), Gaps = 3/246 (1%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E+ + + V + E   R  +     +R  L+ R+  L         +  LTEYVGA+H+L
Sbjct: 1   MEMSRSDAVWSSETAARRMY-GRRISREQLIRRLGELASGTGLGNGLAVLTEYVGATHYL 59

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMAL--SEKDKYYNVLQRPTELFCPVFHTLPENI 120
           L R D+ Q+  LD +V SDWPFD+VR ++   +  +     L++      PVFH +P++I
Sbjct: 60  LARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLNSKTTELEKCRAQLQPVFHAMPDDI 119

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
             P G+   YC++TF +   R  LMLLFP+  I+ +D L ++ +LA Y A+     DV  
Sbjct: 120 GLPRGVSRSYCAVTFSIGPTRFSLMLLFPEDVILSQDALRDVAVLAGYVASHKIKADVRH 179

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+A
Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239

Query: 241 VRNNIV 246
           VRNN+V
Sbjct: 240 VRNNLV 245


>gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti]
          Length = 245

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 110/222 (49%), Positives = 148/222 (66%), Gaps = 2/222 (0%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
            +R  L+ R+  +         + ALTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+
Sbjct: 24  ISREQLIRRLGEVASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDI 83

Query: 87  VRCMAL--SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR ++   +        L++      P FHT+P++I  P G+   YC++TF V R R  L
Sbjct: 84  VRRLSGIIAGLHAKITELEKCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSL 143

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           MLLFP+  I+ ++ L +I +LA Y A+     DV   ++ ELT RE+ECL WI+EGKTSD
Sbjct: 144 MLLFPEDVILSQESLRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSD 203

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V
Sbjct: 204 EIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family
           [Sinorhizobium meliloti 1021]
          Length = 245

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/222 (50%), Positives = 148/222 (66%), Gaps = 2/222 (0%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
            +R  L+ R+  +         + ALTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+
Sbjct: 24  ISREQLIRRLGEVASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDI 83

Query: 87  VRCMAL--SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           VR ++   +        L+R      P FHT+P++I  P G+   YC++TF V R R  L
Sbjct: 84  VRRLSGIIAGLHAKITELERCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSL 143

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           MLLFP+  I+ ++ L +I +LA Y A+     DV   ++ ELT RE+ECL WI+EGKTSD
Sbjct: 144 MLLFPEDVILSQEALRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSD 203

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVRNN+V
Sbjct: 204 EIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRNNLV 245


>gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 245

 Score =  168 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPP-------AGMDNRYCSLT 134
                       VL+R      P          +  +  +           M       T
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
            + + +R  +     +        + E+  +A +  +          +  + LT RE++C
Sbjct: 133 HEPSGLRGAVSFAGDREP-FSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDC 191

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 192 LNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 245

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPP-------AGMDNRYCSLT 134
                       VL+R      P          +  +  +           M       T
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
            + + +R  +     +        + E+  +A +  +          +  + LT RE++C
Sbjct: 133 HEPSGLRGAVSFAGDREP-FSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDC 191

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 192 LNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 245

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  S V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGSTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPP-------AGMDNRYCSLT 134
                       VL+R      P F           +  +           M       T
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNWPRDDGKSALVVGLFERFRMTRCAYFPT 132

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
            + + +R  +     +        + E+  +A +  +          +  + LT RE++C
Sbjct: 133 HEPSGLRGAVSFAGDREP-FSPAEMRELCYIAIHVFDRLAEIRNLDTRITDALTDREIDC 191

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 192 LNWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 246

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 14  DDYIKEIAGLKTQFDIFRFMKRMTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 73

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPP-------AGMDNRYCSLT 134
                       +L+R      P          +  +  +           M       T
Sbjct: 74  LYDQEGLMVNSPILRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 133

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
            + + +R  +     +        + E+  +A +  +          +  + LT RE++C
Sbjct: 134 HEPSGLRGAVSFAGDREP-FSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDC 192

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 193 LNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 245


>gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 244

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVR 88
            D +  +  L         M  +TE   +  F+++            S V + WP +L+ 
Sbjct: 12  DDYVQEIAGLKTQFDIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTVITSWPAELLA 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN-ITPPAG-------------MDNRYCSLT 134
                       VL+R      P F+ +    ++   G             M       T
Sbjct: 72  LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNLSRDDGKSILVASLFERFKMMRCAYFPT 131

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193
            + + +R  +     +        + E+  ++ +  +          +    LT RE++C
Sbjct: 132 HEPSGLRGAISFAGDREP-FSPAEMRELCYISIHIFDRLAEIRNLDTRMTDTLTDREIDC 190

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 191 LNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 244

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVR 88
            D +  +  L         +  +TE   +  FL++            S V + WP +L+ 
Sbjct: 12  DDYIKEIAGLKTQFDIFRFLKRVTEAYRSRAFLVLNLPPITSLDIQGSTVITSWPAELLA 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPP-------AGMDNRYCSLT 134
                       VL+R      P F        +  +  +           M       T
Sbjct: 72  LYDQEGLLVNSPVLRRLRTSARPFFYDMSRENWSRDDGKSILVASLFERFRMMRGAYFPT 131

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193
            + + +R  +     +        + E+  ++ +  +          +    LT RE++C
Sbjct: 132 HEPSGVRGAISFAGDREP-FSPAEMRELCYISIHVYDRLAEIRNLDTRITDTLTDREIDC 190

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 191 LNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 245

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 87/233 (37%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVR 88
            D +  +  L         M  +TE   +  F+++            S V + WP +L+ 
Sbjct: 13  DDYVQEIAGLKTQFDIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPPAG-------MDNRYCSLT 134
                       VL+R      P F        +  +  +           M       T
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFFYDMSRQNWSRDDGKSILVASLFERFKMMRCAYFPT 132

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVEC 193
            + + +R  +     +        + E+  +A +  +          +    LT RE++C
Sbjct: 133 HEPSGLRGAVSFAGDREP-FSSAEMRELCYIAIHVFDRLAEIRNLDTRMTDTLTDREIDC 191

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 192 LNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 244

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFD 85
           P   D L  +  L         +  +TE   +  F+++            S V + WP +
Sbjct: 9   PEEDDYLKEIAGLKTQFDIFRFLKRVTEAYRSRAFMVLNLPPITSLDIQGSTVITSWPAE 68

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYC 131
           L+             VL+R      P  + +                 +     M     
Sbjct: 69  LLALYDQEGLLVNSPVLRRLRTSARPFSYDMSRDNWSRDDGKSVLVTALFERFRMMRGAY 128

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
             T + + +R  +     +        + E+  +A +  +          +    LT RE
Sbjct: 129 FPTHEPSGLRGAVSFSGDRET-FSPAEMRELCYIAVHVYDRLAEIRNLDARITDTLTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 188 IDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243


>gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 245

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 19/234 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         +  +TE      F+++         L  S V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTVLTSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN---------------ITPPAGMDNRYCSL 133
                       VL+R      P F+ +                        M   Y   
Sbjct: 73  LYDQEGLMVDSPVLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAY-FP 131

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
           T + + +R  +     +        + E+  +A +  +          +  + LT RE++
Sbjct: 132 THEASGLRGAVSFAGDREP-FSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTEREID 190

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 191 CLNWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 245

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 19/234 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         +  +TE      F+++         L  S V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTVLTSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN---------------ITPPAGMDNRYCSL 133
                       VL+R      P F+ +                        M   Y   
Sbjct: 73  LYDQEGLMVDSPVLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAY-FP 131

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
           T + + +R  +     +        + E+  +A +  +          +  + LT RE++
Sbjct: 132 THEASGLRGAVSFAGDREP-FSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREID 190

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 191 CLNWTAAGKTSAEIAEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244


>gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         +  +TE   +  F+++         L  S V + WP +L+ 
Sbjct: 16  DDYINEIAGLKTQFDIFRFLKRVTEAYRSRAFMVLNLPPTTSLDLQGSTVITSWPAELLA 75

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPP-------AGMDNRYCSLT 134
                       VL+R      P F        +  +  +           M       T
Sbjct: 76  LYDQEALMVNSPVLRRLRTSTRPFFYDMTRETWSRDDGKSVLVTGLFERFRMMRGAYFPT 135

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
            + + +R  +     +        + E+  +A +  +          +  + LT RE++C
Sbjct: 136 HEASGLRGAVSFAGDREP-FSAAEMRELCYIAIHVFDRLAEIRNLDTRMTDSLTDREIDC 194

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 195 LNWTAAGKTSAEIAEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 247


>gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 210

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 108/210 (51%), Positives = 142/210 (67%), Gaps = 2/210 (0%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL--SEKD 96
           +         + ALTEYVGA+H+LL R D+ Q+  LD +V SDWPFD+VR ++   +   
Sbjct: 1   MASGAGLGNGLAALTEYVGATHYLLARHDVSQDGGLDFVVCSDWPFDIVRRLSGIIAGLH 60

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                L+R      P FHT+P++I  P G+   YC++TF V R R  LMLLFP+  I+ +
Sbjct: 61  AKITELERCLAQLQPAFHTMPDDIGLPRGVSRSYCAVTFSVGRTRFSLMLLFPEDVILSQ 120

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + L +I +LA Y A+     DV   ++ ELT RE+ECL WI+EGKTSDEIAVILGISRNT
Sbjct: 121 EALRDIAVLAGYVASHKIKADVRHDRECELTERELECLFWIAEGKTSDEIAVILGISRNT 180

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +NNYI S+MRKTAT+TRS AIA+AVRNN+V
Sbjct: 181 INNYITSVMRKTATRTRSEAIAHAVRNNLV 210


>gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 245

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 111/225 (49%), Positives = 148/225 (65%), Gaps = 2/225 (0%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           S   +R  L+ R+       S    +  LTEYVGA+H LL R DL Q+  LD ++ SDWP
Sbjct: 21  SRGISREQLIRRLGEAAERSSLANGLAILTEYVGATHHLLARHDLSQDGGLDFVLCSDWP 80

Query: 84  FDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           FD+VR +A      +     L++      P F  LP++I  P G++  YCS+TF+V R R
Sbjct: 81  FDVVRRLASIVIGLNAKTTELEKCLAALQPCFQVLPDDIDLPRGVNRSYCSVTFNVGRSR 140

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             LMLLFP+  I+ ++ L +I +LA+Y A+      V   +DFELT RE+ECL WI+EGK
Sbjct: 141 FSLMLLFPEDVILSQEGLRDIAVLASYLASFKAGAGVRHDRDFELTEREIECLFWIAEGK 200

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+EIAVILGISRNT+NNYI S+MRKTAT+TRS AIA+AVR+N+V
Sbjct: 201 TSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245


>gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 260

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + + R      T     ++   +  +G  +F L+       QK    + ++ P       
Sbjct: 10  EHIDRFTKAKKTSEIQQQLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTSWFEAY 69

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSLTFD 136
           +         V+    +   P+F    +               +    G+ N        
Sbjct: 70  SERHYLTQDPVVFLGLKQTQPIFWNKLDCDSPWLPSASREVMNLAADFGVRNGVSFPLHT 129

Query: 137 VARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSY----DVHWGKDFELTGRE 190
                  L  +  +     ++ + +  +   A+Y  N                 EL+ RE
Sbjct: 130 PQGEHGILSFISKEKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDLMKHLTELSDRE 189

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGIS  TVN ++  +  KT +K R+ AIA ++ + I+
Sbjct: 190 KECLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 245


>gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 245

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 21/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRC 89
           D++ R+       +    +     Y G   F++      Q + L D  +   WP +  + 
Sbjct: 10  DVIGRLQAASSQTALFSELKEAGRYFGYDSFIVTGLPHRQGENLNDCSLLVGWPMEWAKR 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLP------------ENITPPAGMDNRYCSLTFDV 137
                      V+ +      P                   N +P  G++  +C     +
Sbjct: 70  YTERRYIHVDPVIAQIRRTLDPFMWDEAPYDRSDPGPATVMNESPSFGLNQGFCVPIHRI 129

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGRE 190
                G+         +  D    + L+A Y  +  ++             +    + RE
Sbjct: 130 DGREAGVSF-GASRMDLSDDARAGLHLVAIYAFSAARALSAMPSNPADPERQPPRCSARE 188

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EC+ W + GKT  EI+ IL +S+ TV  Y+ +  RK     R   IA A+R+ ++
Sbjct: 189 IECMRWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244


>gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565]
 gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565]
          Length = 258

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 85/236 (36%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + + +      T      +   +  +G  +F L+       QK    + ++ P       
Sbjct: 8   EHIDKFTKATKTSDIQQLLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTTWFDAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSLTFD 136
           + ++      V+    +   P+F    +               +    G+ N        
Sbjct: 68  SENQYLTQDPVVYLGLKQTQPIFWNKLDCDSPWLPSASRDVMNLAADFGVRNGVSFPLHT 127

Query: 137 VARIRIGLMLLFPK--GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGRE 190
                  L  +        ++ + +  +   A+Y  N                 EL+ RE
Sbjct: 128 PQGEHGILSFITKDKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDMMKYLTELSDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGIS  TVN ++  +  KT +K RS AIA  + + I+
Sbjct: 188 KECLFWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSGII 243


>gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 15/241 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S V +     D +  +            + A     G    ++       ++    +++
Sbjct: 1   MSAVDYGREALDFIEGLGVYRKVPDAMNALEAAFGRFGFETIIVTGLPNPDQRFAQMVLA 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGM 126
             WP         +  D++  V++   +   P   +                N      M
Sbjct: 61  KRWPAGWFNLYTQNNYDRFDPVVRLCRQSVNPFEWSEAPYDAELEPSAAEVMNRAGDFRM 120

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFE 185
              +      +      + L       +       + L+A Y  +  +   +        
Sbjct: 121 SRGFIVPIHGLTGYEAAVSL-GGVHLDLNPRSKPALHLMAMYGFDHIRRLLEPTPYPSTR 179

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E ++W S+GK++ EI  IL I++ T   ++A+  RK     R+ A+A A+R+ I
Sbjct: 180 LTPREREVISWASQGKSAWEIGEILHITQRTAEEHLATAARKLGAVNRTHAVALAIRHKI 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
 gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297]
          Length = 240

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 86/235 (36%), Gaps = 19/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DLL R+     T      + ++++ V   +FL            D ++  ++P +  R  
Sbjct: 2   DLLERLQQAQSTSELPEILESISQVVEFDYFLFGLALPNSITHSDILMYDNYPGEWRRVY 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFDV 137
             S   K   ++Q     + PV                        +G+   +       
Sbjct: 62  DESGYAKRDPIVQYSISNYMPVTWAQISESPSYSRSDLKIMWEAEASGLKAGFSLPIHGA 121

Query: 138 ARIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREV 191
                 +         + R+   + +  I +L     +  K   V   K+    LT RE+
Sbjct: 122 VGEFGMISFASNHNTDEQRLKYAEAIPVIQMLVPAIQDAVKRLRVSESKEPPAKLTKREI 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECLTW +EGK+S EI+ ILG S  T   ++++   K     R  AI+ A+   I+
Sbjct: 182 ECLTWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCGII 236


>gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 246

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            +  +  L    +    +       G    ++      ++     +++  WP +  +   
Sbjct: 17  FVEELSTLTTISAAIDFIEKGFCAYGFETIIVTGIPNHKQSFSQMVMAKRWPDEWFKLYT 76

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVA 138
            +   +   V++   + F P   +                +      M   +      +A
Sbjct: 77  QNNYHRDDPVVRHLRKSFNPFEWSDAPYSRRNEPRAAAVMDRAADFRMSRGFIVPVHGLA 136

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWI 197
                + L       +       + L+A Y  +  +S           LT RE E L W 
Sbjct: 137 GYEAAVSL-GGDHIDLNPRSKPALHLMAMYAFDRIRSLVSPANDAPPRLTHRECETLNWT 195

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++GK++ EI  IL I++ T   ++A+  RK     ++ A+A A+R  ++
Sbjct: 196 AQGKSAWEIGEILQIAQRTAEEHLATAARKLGAVNKTHAVAIAIRQKLI 244


>gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 16/239 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSD 81
           V   P   D +  +  L         M  +T+      F++V        +   + V ++
Sbjct: 7   VGRSPRGEDYIDEIAGLKTQFDVFRFMKRVTDAYRCRAFMVVNLPSLTSFELQSNSVINN 66

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-------------AGMDN 128
           WP +L+         +   V +R      P  +    N                   M  
Sbjct: 67  WPAELLTVYDQEGLLRNSTVSRRLRVSTLPFVYDTAANTNRDDSKIQLRASLFERFRMAR 126

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
             C  T D + IR  ++L   +      +   ++  +A +  +          +    LT
Sbjct: 127 SICLPTHDASGIRGAVILSGDREA-FTAEETKDLCYIAIHVFDRLAEIRNLDVRIVDTLT 185

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++CL W + GKTS EIA IL +S +TVN+Y+    +K  T  R+ A+A A+R  ++
Sbjct: 186 DRELDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGLI 244


>gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 248

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 113/232 (48%), Positives = 149/232 (64%), Gaps = 3/232 (1%)

Query: 18  QRTSFVSHLPTRSDLLAR-MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           Q+T+     P   D + R +     +    + M+ LT+Y GASH+LL R+DL QE  LD 
Sbjct: 17  QKTANRPEGPRLRDAMIRQLSSAASSGKLRVAMHILTDYAGASHYLLARYDLIQEHGLDF 76

Query: 77  IVSSDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           +V++DWPFDL R +A            L++   L    F  LP+++  P G   +YCS+ 
Sbjct: 77  VVTADWPFDLARGVATELSAACSRATELEKCLGLLQAKFVLLPDDLELPLGASRQYCSVM 136

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           F+V R R+ L++L P G +I  DRL ++GLLAAY  ++         +DFELT RE+ECL
Sbjct: 137 FNVGRTRLALVMLLPDGFVISPDRLRDVGLLAAYCVSLSTGRSQKADRDFELTERELECL 196

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            WI+EGKTSDEIA ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V
Sbjct: 197 FWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 248


>gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria]
          Length = 258

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTTVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPVSWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D    LT RE E
Sbjct: 128 AAGETGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQHAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L  +  +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHLTMVTDESRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSL 133
           +   L+       ++Q       P++    +               +    G+ N     
Sbjct: 65  QAYTLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELT 187
               A     L  +  +     ++ +    +  ++ Y         +           LT
Sbjct: 125 LHGAAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 ERETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46]
          Length = 260

 Score =  154 bits (390), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEATIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
 gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens
           AM1]
          Length = 242

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 63/234 (26%), Gaps = 16/234 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              D +  +            +  +    G  HF++       ++    ++    P    
Sbjct: 8   RALDFVEGLDDCHDHDQVAHSVERILAEFGFEHFVITGLPNPNDRLDQVLLIRRLPAGWF 67

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLT 134
              A         V +       P                          GM   +    
Sbjct: 68  EHYARHNYMYLDPVFRNCRATTSPFDWGEAPYDPETEPGAIEVMQRATDFGMARGFSVPI 127

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVE 192
                       +  +   +       + ++A Y     +             LT RE E
Sbjct: 128 HGPEGC-EACFSMSGRNPDLTGRTKPAVHMIAMYAFERARQVGRRPAKPPSNPLTQREQE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LTW + GK+S + A I+ I+  T   +  +   K     R+ A+  A+++  +
Sbjct: 187 VLTWAALGKSSRDTAEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKFI 240


>gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium
           thermocellum ATCC 27405]
 gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum ATCC 27405]
 gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 2360]
 gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum JW20]
 gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium
           thermocellum DSM 1313]
          Length = 216

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +V+  +       +  +      +A +                    G     L 
Sbjct: 1   MDKIRVVIADDHAMVREGLKQILELEKDIAVVAQASN---------------GEEAVKLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +        +  +                 +   +            
Sbjct: 46  KECQPDVVLMDINMPGMNGLQAIEKIKAENL--------AVKIIVLTIHEDKEYLFKTLQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   +   +  +      I  +   E+      + N     +     + 
Sbjct: 98  MGAEGYVLKDADSTVLVEAIRSVNRGESYIQSNMTKEL----VREFNRVTVNEKAKKTEN 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  I++G  + EIA  L IS  TV N++++I +K     R+ A  YA ++N
Sbjct: 154 DLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRTQAAIYAYKHN 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria]
          Length = 258

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           DX-1]
 gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           DX-1]
          Length = 243

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
              +   +  +L    G + +++           +  +++ WP D               
Sbjct: 24  DAPALVSQFESLIASCGFTAYIIAGLPSRNAGLPELTLANGWPRDWFDLYVSENFSAVDP 83

Query: 101 VLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           V +       P                          G+   YC             + +
Sbjct: 84  VPRHVASTVHPFVWSEAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDG--SAAISM 141

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEI 206
             K   +       + L++ Y  +  ++      G+  +LT RE E L W ++GKT+ EI
Sbjct: 142 AGKDPDLSPAARGAMQLVSIYAHSRLRTLGRPKPGRRNKLTARECEILQWAAQGKTAWEI 201

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IL I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 202 SMILCIAERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725]
          Length = 260

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D E    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFQAAIRNVRVSLRDDEPQGALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ]
          Length = 260

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L  ++ +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHLLSVTDGDRLAELIGRFTLGMGYDYYRFALIIPTSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGIL 243


>gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 258

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51]
 gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24]
 gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
          Length = 260

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m]
          Length = 260

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30]
 gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m]
          Length = 260

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii]
          Length = 258

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 81/238 (34%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGNRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLT 134
               +       V++   +   P++    +                    G+ N      
Sbjct: 66  AYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTG 188
              A     L  +  +     +L +    +  ++ Y              D      LT 
Sbjct: 126 HGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTE 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   ++
Sbjct: 186 RETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243


>gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae]
          Length = 260

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 83/238 (34%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTLVTDGNRLAEVIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSLT 134
              L+       ++Q       P++    +               +    G+ N      
Sbjct: 66  AYTLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTG 188
              A     L  +  +     ++ +    +  ++ Y         +           LT 
Sbjct: 126 HGAAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLTE 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
          Length = 258

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRCAGLIGRFTLDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
            A     L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1]
 gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m]
 gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m]
          Length = 260

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLT 134
               +       ++Q   +   P++    +                    G+ N      
Sbjct: 66  AYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTG 188
              A     L  +  +     +L +    +  ++ Y             +D +    LT 
Sbjct: 126 HGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei]
 gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes]
 gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae]
 gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363]
          Length = 260

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLT 134
               +       ++Q   +   P++    +                    G+ N      
Sbjct: 66  AYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTG 188
              A     L  +  +     +L +    +  ++ Y             +D +    LT 
Sbjct: 126 HGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 254

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 81/231 (35%), Gaps = 21/231 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDWPFDLVR 88
            D +  +  L         M  +TE      F+++         L  + V + WP +L+ 
Sbjct: 13  DDYIKEIAGLKTQFDIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTVITSWPAELLA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF-------HTLPENITPP-------AGMDNRYCSLT 134
                       VL+R      P          +  +  +           M       T
Sbjct: 73  LYDQEGLMVNSPVLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPT 132

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
            + + +R  +     +        + E+  +A +  +          +  + LT RE++C
Sbjct: 133 HEPSGLRGAVSFAGDREP-FSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDC 191

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L W + GKTS EIA IL +S +TVN+Y+    +K  T  R+     A R  
Sbjct: 192 LNWTAAGKTSAEIAEILVLSEHTVNHYLNRATKKLDTVNRTQ----ARRQG 238


>gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m]
          Length = 260

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYEYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Burkholderia
           oklahomensis EO147]
          Length = 236

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 13/233 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              +DLL  +     +      +   T  +G  +F           K   ++ S++P   
Sbjct: 3   LKLTDLLLSITQKSTSSEIFSSLEKYTRELGFDNFSYGFCHPIPFTKPRIVILSNYPERW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVA 138
               +          +        P   +           +     G+   +     D  
Sbjct: 63  RGRYSELGYVNIDPTVLHGRNSQSPFTWSELPTSDVRSFWDEANAHGLVVGWAKSILDSD 122

Query: 139 RIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSY--DVHWGKDFELTGREVEC 193
                L L      +  ++       + LLA     +              +L+ REVE 
Sbjct: 123 GGLGMLTLARSNEELCGKELAAKNLRMCLLADLTHMVLSDAYRKEMTASADKLSAREVEI 182

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W ++GKT+DEI  IL IS +TV  +  + + K     ++ A+A A    ++
Sbjct: 183 LRWHADGKTADEIGRILSISIDTVKFHTKNAVVKLGASNKTAAVARAAIMGLL 235


>gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae]
          Length = 258

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 81/234 (34%), Gaps = 18/234 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+Q   +   P++    +                    G+ N        
Sbjct: 68  TDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
                  L  +  +     +L +    +  +A Y              D +  LT RE E
Sbjct: 128 APGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETE 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 188 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 241


>gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V++   +   P++    +                    G+ N        
Sbjct: 68  TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGRE 190
            A     L  +  +     +L +    +  ++ Y              D      LT RE
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   ++
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243


>gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880]
          Length = 260

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 82/236 (34%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  +  Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMCNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m]
          Length = 260

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D E    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDEPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLVWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
 gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila]
          Length = 260

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3]
          Length = 260

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 228

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 64/240 (26%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  +          L      L  +   +       +   L              
Sbjct: 13  PITLLLVDDHPVVRKGTRDLLEGEPDLKVLGEAENGEDAIQKTRDL-------------- 58

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  + +           +     L    +             
Sbjct: 59  -QPNVILMDVSMPGMNGIEATKRIKAE--------MPHVGVLVLTSYDDDAYVFALLEAG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +      +      +           F +       +  L
Sbjct: 110 AAGYLLKNAREDELLGAVRAVAAGESALHPSVARK-------VLERFSTNQTPSPPEETL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    +R+ A+ Y ++   +
Sbjct: 163 SPRELEVLRIAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIKRGWI 222


>gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens]
          Length = 234

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  ++  +   +W+  ++AL +  G S  L             S + S++         
Sbjct: 1   MLEDILMCETLEAWSKVLFALAKEYGFSSVLFGVKPTISTPFSSSTIISNYSRSWRSIYD 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIR 141
            +   +   V+        P+  T                  +G+ +  C          
Sbjct: 61  ANAYYEVDPVVFHCLNSSLPLVWTKENFINKPEQQLYEAASASGVCSGLCMPIHGPRGEF 120

Query: 142 IGLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194
             L  +  +       R   L +  L+  Y    F+       K+ E    LT RE+ECL
Sbjct: 121 GMLNFITDEKSPADVIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECL 180

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W++ GKTS EI+ IL  +  TVN ++ + MRK   ++R  A+   +R+ +V
Sbjct: 181 KWVAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 260

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 76/240 (31%), Gaps = 14/240 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
             E E+ T+  + +    D       +   + +      + E   G     LV       
Sbjct: 26  VSEKERGTTMKTRIVLIDDHKLFREGIKRILDFEQDFEVVAEGSDGDEALALVERYKPDV 85

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +                 +   +       +         Y 
Sbjct: 86  VIMDINMPHVNGVEATRQLIE--------AYPDTKVIILSIHDDESYVMHALQTGAMGYL 137

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDFEL 186
               D   +   + ++   G  +       +      L+A       K           L
Sbjct: 138 LKEMDADALIEAVRVVAEGGSYLHPKVTHNLVKEYRRLVAGEGGGKEKQNQDVCRPYHLL 197

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +++GK++  IA  L IS  TV N++++I++K     R+ A+  A++N  V
Sbjct: 198 TRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNGWV 257


>gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 226

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 105/223 (47%), Positives = 141/223 (63%), Gaps = 2/223 (0%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
              R  L   +       +    +  L  Y GASH+LL R DL +E  L  IV+SDWPFD
Sbjct: 4   PLPRDQLAKNVAATAAAGNVAGALDLLVTYAGASHYLLARDDLLEETGLKFIVTSDWPFD 63

Query: 86  LVRC--MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           LVR   + L+      + +++   L  P    LP++++ P G+D +Y +L+F V RIR+ 
Sbjct: 64  LVRRLGIELTNSQNRSSEMEKCLSLLQPRLLLLPDDVSVPYGIDRQYSALSFCVGRIRLS 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+LLFP+  +   +RL EI LL  Y  +   + +    +D +LT RE+ECL WI+EGKTS
Sbjct: 124 LLLLFPEEAVPSPERLREIALLTGYCVSFGIASEAKTVRDIDLTERELECLFWIAEGKTS 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA+ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN+V
Sbjct: 184 DEIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 226


>gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
 gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU
           [Eubacterium eligens ATCC 27750]
          Length = 214

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + +     +  L      +  +                    G     +    
Sbjct: 3   INVLLADDHKMVREGLKQLLEIDSEIKVVGEAGD---------------GYECLNITNKT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +     ++  M   +             +   + + +   I       
Sbjct: 48  KPNIVLLDLNMPNLDGLQVLSIMKQQKM--------LCKIIVLTIHNEIEYLIKAIDIGC 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   ++  +  ++     I    +  +              DV   K  ELT
Sbjct: 100 DGYILKDSNFDTLKKAIFSVYAGETYIEPSLMPLL-------NASLAERDVLKDKVSELT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G  + EIA  L IS  TV N++++I +K     R+ A  +A++NNI+
Sbjct: 153 RRELEVLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAVFAIKNNII 211


>gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 251

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 106/242 (43%), Positives = 148/242 (61%), Gaps = 2/242 (0%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V++ + R   +    +     R  L   +       + +  +  L  Y GASH+LL R 
Sbjct: 10  KVDVDIRRLSAKPMEGMGKPLPRDQLAKNVAASAAAGNVSGALDLLVTYAGASHYLLARE 69

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           DL +E  L  I++SDWPFDLVR +           + +++   L  P    LP++++ P 
Sbjct: 70  DLLEETGLKFIITSDWPFDLVRRLGAELANSQNRSSEMEKCLSLLQPRLLVLPDDVSVPF 129

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G+D +Y +L+F V RIR+ L+LLFP+  +   DRL EI LL  Y  +   + +    +D 
Sbjct: 130 GIDRQYSALSFCVGRIRLSLLLLFPEHSVPSPDRLREIALLTGYCVSFGIASEAKAVRDI 189

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIAYAVRNN
Sbjct: 190 DLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNN 249

Query: 245 IV 246
           +V
Sbjct: 250 LV 251


>gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565]
 gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565]
          Length = 268

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 16  EYLEHFTSVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 75

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V++   +   P++    +                    G+ N        
Sbjct: 76  TENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFPLHG 135

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGRE 190
            A     L  +  +     +L +    +  ++ Y              D      LT RE
Sbjct: 136 AAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERE 195

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   ++
Sbjct: 196 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 251


>gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 248

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 86/236 (36%), Gaps = 21/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVSSDWPFDLVRC 89
           D++ R+      V     +       G   FL+        E   D  + S WP +  R 
Sbjct: 13  DIVHRLRRASTDVDVYSELRRSGAIFGYDVFLIAGLPRAPHENLYDCSLISGWPPEWGRR 72

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLP------------ENITPPAGMDNRYCSLTFDV 137
                      V++       P                          ++  +C     +
Sbjct: 73  YQERRHMHVDPVIRHIRGTTDPFLWQEAVDAQVTPEGMVVMEEARAFSLNEGFCVPFHQI 132

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------KDFELTGRE 190
                G+     +   + +D    + L+A Y  +  K+     G           LTGRE
Sbjct: 133 DGTEAGVSF-GGEQVRLSQDERAALHLVAIYAMSTAKAIARRRGLSEDDGTPPSPLTGRE 191

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W S GK++ EI VIL IS  TV +++ S +RK  + TR+ A+A A+R +I+
Sbjct: 192 AECLKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHII 247


>gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens]
          Length = 234

 Score =  151 bits (382), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 87/232 (37%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  ++  +   +W+  +++L +  G S  L             S + S++         
Sbjct: 1   MLEEILMCETLDAWSQVLFSLAKDCGFSSVLFGVKPTISTPFSSSTIISNYSKSWRAFYD 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIR 141
            +   +   V+        P+  T                  +G+ +  C          
Sbjct: 61  SNACYEVDPVVFHCLNSSLPLVWTKENFINPPELQLYEAASASGVRSGLCMPIHGPRGEF 120

Query: 142 IGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECL 194
             L  +  +           L +  L+  Y    F+       K+FE    LT RE+ECL
Sbjct: 121 GMLNFITDEKSPADLINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECL 180

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W++ GKTS EI+ IL  +  TVN ++ + MRK   ++R  A+   +R+ +V
Sbjct: 181 KWVAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232


>gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881]
          Length = 260

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 84/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii]
          Length = 260

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
 gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida]
 gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m]
          Length = 260

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             ++ +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             ++ +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980]
          Length = 260

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 83/239 (34%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + +       +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYFEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             ++ +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLT 134
               +       ++Q   +   P++    E                    G+ N      
Sbjct: 66  AYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTG 188
              A     L  +  +     +L +    +  ++ Y             ++ +    LT 
Sbjct: 126 HGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 264

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 17/237 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               DL+A+        +    +  L+  +G  +F L        Q+ D I+ +  P   
Sbjct: 12  LHALDLIAQFETAADERTIVTLLRELSGRMGFDYFRLALIFPSTIQRPDVIIFNGCPQAW 71

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLP--------------ENITPPAGMDNRYCS 132
           V     S       +++       P+                     +    G+ +    
Sbjct: 72  VDTYTSSGFFAIDPIVKCAMTKSTPILWADVVNDEERCDEQGREMMQLANEYGICDGITL 131

Query: 133 LTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGR 189
                      L  +   P+ +      +  I  L+ +                  L+ R
Sbjct: 132 PWHGANGHVGLLSFITSTPRTQQQWLSAVPFISWLSMHIFEAVARVCLAGLSPHDALSLR 191

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E   W +EGK   +IA ILGI+  TV  ++ +++ K    ++S AI++A++  +V
Sbjct: 192 ELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGMV 248


>gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4]
          Length = 260

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHW----GKDFELTGRE 190
            A     L  +  +     +L +    +  ++ Y                     LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +      +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRSLPGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             +D +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
 gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    E                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             ++ +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 83/239 (34%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + +       +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYFEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    E                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             ++ +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB5]
          Length = 242

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 15/219 (6%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
              S   +        G S +++           D  +++ WP                 
Sbjct: 24  DGPSLIRQFETHIASGGFSAYIMAGLPSPGAGLADLTLANGWPRGWFELYVRENYIAVDP 83

Query: 101 VLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           V +       P   +                      G+   YC            ++ +
Sbjct: 84  VPRHGATTVQPFEWSEAPYDRKQNRAAHKVMTHATEFGLVRGYCIPLHYDEG--GAVISM 141

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +       + L+  Y  N  +S      +   LT RE E L W + GKT+ EI+
Sbjct: 142 AGDQPDLDPVAKGAMQLIGVYAHNRIRSLHRPKPQRRLLTSRECEILLWAAHGKTAWEIS 201

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IL I+  TV  ++    +K     R+ A+A A+   ++
Sbjct: 202 IILHIAERTVKFHLIEASKKLNAVNRTAAVAKALAFGLI 240


>gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR
 gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila]
 gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida]
 gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 260

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLT 134
               +       ++Q   +   P++    +                    G+ N      
Sbjct: 66  AYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTG 188
              A     L  +  +     +L +    +  ++ Y             ++ +    LT 
Sbjct: 126 HGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTLVTDGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSLT 134
              ++       ++Q       P++    +               +    G+ N      
Sbjct: 66  AYTVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTG 188
                    L  +  +     +L +    +  ++ Y         +           LT 
Sbjct: 126 HGATGENGILSFITRERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 243

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
             +   R  +L    G + +++           +  +++ WP D               V
Sbjct: 25  APALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDWFDLYVSENFSAVDPV 84

Query: 102 LQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +       P                          G+   YC             + + 
Sbjct: 85  PRHGATTVHPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDG--SAAISMA 142

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIA 207
            K   +       + L++ Y  +  ++       +   LT RE E L W ++GKT+ EI+
Sbjct: 143 GKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEIS 202

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VIL I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 203 VILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii AYE]
 gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB900]
 gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB056]
 gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB058]
 gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB059]
 gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
 gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR
           family) [Acinetobacter baumannii AYE]
 gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057]
 gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii
           AB307-0294]
 gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013150]
 gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6013113]
          Length = 238

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 18/235 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSAFLVVKNEYQLFEIVKSTASRLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +  K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREV 191
             R  L L     + +             +      S       D E       LT RE 
Sbjct: 125 GTRGMLTLARSNDQ-LSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREK 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 184 EALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria]
          Length = 260

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 80/239 (33%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L               +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFNSSADGNRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       V++   +   P++    +                    G+ N     
Sbjct: 65  QAYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELT 187
               A     L  +  +     +L +    +  ++ Y              D      LT
Sbjct: 125 LHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   ++
Sbjct: 185 ERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKEVSTGLL 243


>gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
 gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii
           ACICU]
          Length = 238

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 18/235 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + ++   +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSAFLVVKNEYQLFDIVKSIASRLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +  K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYVEQQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREV 191
             R  L L     + +             +      S       D E       LT RE 
Sbjct: 125 GTRGMLTLARSNDQ-LSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREK 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 184 EALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLT 134
               +       ++Q   +   P++    E                    G+ N      
Sbjct: 66  AYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTG 188
              A     L  +  +     +L +    +  ++ Y             ++ +    LT 
Sbjct: 126 HGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 243

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
             +   R  +L    G + +++           +  +++ WP D               V
Sbjct: 25  APALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDWFDLYVSENFSAVDPV 84

Query: 102 LQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +       P                          G+   YC             + + 
Sbjct: 85  PRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDG--SAAISMA 142

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIA 207
            K   +       + L++ Y  +  ++       +   LT RE E L W ++GKT+ EI+
Sbjct: 143 GKDPDLSPAARGAMQLVSIYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEIS 202

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VIL I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 203 VILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGLI 241


>gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia]
 gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170]
          Length = 260

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 234

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++ ++  +  V+W   +  L +  G    L+        +  D+ + S +     +    
Sbjct: 1   MSPLLEAENDVTWFRELARLADDWGFDRVLVGILPRPGMRLEDAFIRSTYSPTWRQFYNE 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVARIRI 142
                    +        P+  +                   G+            +   
Sbjct: 61  QGFAHIDPTVAHCMTKSSPLIWSPDLFDTYPAQTMYEEARAHGLRAGVSLPIHGPRQESG 120

Query: 143 GLMLL----FPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
            +  +             D  L  + LL     +  + +     +    +LT RE ECL 
Sbjct: 121 LICFVNDHNPSDDFWRHLDVVLPNLVLLRDLVIDTSQPHLNTHTQALVPKLTPREQECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii]
          Length = 260

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +      +  +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTMVTDEDRLSELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L D    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAEQASSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
 gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii
           ATCC 19606]
          Length = 238

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 18/235 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSAFLVVKNEYQLFEIVKSTASRLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +  K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYVERQYVKIDPTVQHCMASLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREV 191
             R  L L     + +             +      S       D E       LT RE 
Sbjct: 125 GTRGMLTLARSNDQ-LSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREK 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 184 EALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7]
          Length = 260

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 75/234 (32%), Gaps = 20/234 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V+    +   P++    +                    G+ N        
Sbjct: 68  TDNHMLACDPVIPLARKQTLPIYWNRLDERARFLPEGTMDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDV----HWGKDFELTGRE 190
                  L  +  +     +L +    +  ++ Y                     LT RE
Sbjct: 128 ATGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDSDPKDPLTERE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSTG 241


>gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae]
          Length = 260

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L  +  +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHLTTVTDEDRLAELISRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    E                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             ++ +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
 gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis
           Nb-231]
          Length = 249

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 72/230 (31%), Gaps = 20/230 (8%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
           +  D          AL E  G  HF+          K   +V S  P             
Sbjct: 15  LHADGVEGVQRLCAALGEAYGFDHFIYGASFPTSLIKPAVLVISGHPEAWRDHYQACGYL 74

Query: 97  KYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIG 143
                +Q  T    P+                         G+ +               
Sbjct: 75  AVDPAVQHCTRSIRPLIWQDLMLDPKIDEKPFTVMQEAREFGLVSGVSLSIRGSRGELGV 134

Query: 144 LMLLFPKGRIILRD----RLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTW 196
           L     +     R      + ++ LL+AY         +         ELT RE ECL W
Sbjct: 135 LSFSSERTAQQTRSEIDSAIPDLYLLSAYVHEAVGRLVTQGSLPFNRPELTAREHECLLW 194

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EGKTS EIA ILGIS  T   ++ +  R+    +R  A+A AV   ++
Sbjct: 195 AAEGKTSWEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQGLI 244


>gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii]
          Length = 260

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTLVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L D    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAEQASSDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella
           australiensis 50-1 BON]
 gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella
           australiensis 50-1 BON]
          Length = 217

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 25/241 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       +  + +    +  +           +  ++            
Sbjct: 1   MDKIKVMIADDHPLMRQGLERILSLEPDIDVIAQAANGSEVIEKTKSII----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + ++ +  ++             +   V +     +    
Sbjct: 50  ----PDVILMDINMPVMNGLETIKVLKSNK----CP----SRIIMLTVHNDKQYLLESLK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +V ++   +   +     +  +      +L   QA+    ++V    D 
Sbjct: 98  LGACGYILKDAEVDQLVEAIHKAYRGQLYVQTEMAN--PVLKEDQASPLYGFNVGIRYDD 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  +++G ++ EIA  L IS  TV N+++SI RK     R+ A  YA+++ 
Sbjct: 156 DLTQREREVLALVAKGLSNGEIAKKLFISEKTVKNHLSSIFRKLNVSDRTQAAVYAIKHG 215

Query: 245 I 245
            
Sbjct: 216 Y 216


>gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 82/239 (34%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L  +  +         M   T  +G   +          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHLTMVTDESRLAEVMSRFTVGIGYDDYRFAVILPTSMQRRKEVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSL 133
           +   ++       ++Q       P++    +               +    G+ N     
Sbjct: 65  QAYTVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELT 187
                     L  +  +     +L +    +  ++ Y         +           LT
Sbjct: 125 LHGATGESGILSFITRERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2]
          Length = 260

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 80/238 (33%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLT 134
               +       ++Q   +   P++    +                    G+ N      
Sbjct: 66  AYTDNHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHW----GKDFELTG 188
              A     L  +  +     +L +    +  ++ Y                     LT 
Sbjct: 126 HGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W SEGKTS +IA ILGI+  TVN ++  + RKT +  R  AIA  V   I+
Sbjct: 186 RETECLFWASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSRGIL 243


>gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 244

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 18/233 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L   ++  D           +   +G  HFL          +    + S +P +  +   
Sbjct: 6   LFESLLNCDSVEELHSATTTIARAMGFEHFLYGVQVNTSLTRPYRFILSCYPEEWRKHYD 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARIR 141
                 +   +        P+            T   N     G+ +             
Sbjct: 66  KEGYANFDPTVSHCARTSIPIIWKKEIFKGRRETRVRNEAKDCGLVSGASFSVHGGRGEA 125

Query: 142 IGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKSY----DVHWGKDFELTGREVEC 193
             L L   +     +      + +  LL  Y     +           K   LT RE EC
Sbjct: 126 AMLSLATSRESREAQNDILATMAKAQLLTCYLHEAVQRIVLSKGPLPVKKANLTEREQEC 185

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKT  EIA I+ IS  TV  ++ + ++K     R  AI+ A+   ++
Sbjct: 186 LLWAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRALSMGLI 238


>gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum]
          Length = 260

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 84/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTSVTDEDRLAELIGRFTLGMGYDYYRFAVIIPMSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W S GKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  + N I+
Sbjct: 188 TECLFWASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNGIL 243


>gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis
           z3032]
 gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032]
          Length = 241

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R ++  R   +  +      +   T+ +   +F L         +    + + +P   + 
Sbjct: 10  RREMTTRFQEIQDSGDIYSLLKTETQNMEYDYFALCVRHPVPFTRPKLTLHTTYPEAWLE 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL---------PENITPPAGMDNRYCSLTFDVAR 139
                       VL+    L  P+               N     G+            R
Sbjct: 70  HYQAENYFVIDPVLKPANYLIGPLSWNDALFAGAAEELWNAARDHGLVKGVTQCVIAPNR 129

Query: 140 IRIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECL 194
            +  L +         +   +    +  L           +       + +L+ RE E L
Sbjct: 130 AQGFLSVSGTSPRGHSMPDDELALRLQHLVEQSLVAMMRLEDPAATVLEMKLSKREKEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 QWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGLI 241


>gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria]
          Length = 237

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
                +   T  +G  ++          Q+   ++ +  P   V+    +       V+Q
Sbjct: 3   RLAGLIGRFTVDMGYDYYGFTLIIPMSMQRPKVVLFNQCPISWVQTYTDNNMLACDPVIQ 62

Query: 104 RPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              +   P++    +                    G+ N         A     L  +  
Sbjct: 63  LARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFITS 122

Query: 150 KGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDE 205
           +     +L +    +  +A Y              D +  LT RE ECL W SEGKTS E
Sbjct: 123 ERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQQAALTDRETECLFWASEGKTSGE 182

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA ILGI+  TVN ++  + RKT +  R  AIA  + + I+
Sbjct: 183 IACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGISSGIL 223


>gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii]
          Length = 260

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSAIL 243


>gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
 gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5
           [Acinetobacter baumannii 6014059]
          Length = 238

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 18/235 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSAFLVVKNEYQLFDIVKSTASRLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +  K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYVEGQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREV 191
             R  L L     + +             +      S       D E       LT RE 
Sbjct: 125 GTRGMLTLARSNDQ-LSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREK 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKTS EIA ILG++  TVN ++++ M+K     +  A   AV   ++
Sbjct: 184 EALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001]
 gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001]
          Length = 242

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + +A ++       W   +  L E  G    L+        +  D+ V S +  +  R  
Sbjct: 7   EQMAPLLDAADEAEWFSAVAGLAETWGFDRLLVAMLPRPTIRLEDAYVRSTYAPEWRRTY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARI 140
                      +        P+  +                   G+            + 
Sbjct: 67  DEQGLVHIDPTVAHCATRSTPLVWSPEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQE 126

Query: 141 RIGLMLLFPKGRIIL-----RDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVEC 193
              +  +                L  + LL     +  + +     +    +LT RE EC
Sbjct: 127 AGMMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPREREC 186

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 187 LQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239


>gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003]
 gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003]
          Length = 242

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + +A ++       W   +  L E  G    L+        +  D+ + S +     R  
Sbjct: 7   EQMAPLLNAADEAEWFSAVAKLAETWGFDRLLIAMLPRPTMRLEDAYIRSTYAPAWRRTY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARI 140
                      +        P+  +                   G+            + 
Sbjct: 67  DEQGLVHIDPTVAHCATRSTPLVWSPEIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQE 126

Query: 141 RIGLMLLFPKGRIIL-----RDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVEC 193
              +  +                L  + LL     +  + +     +    +LT RE EC
Sbjct: 127 AGMMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHAQSLLPKLTPREREC 186

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 187 LQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 239


>gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 217

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ I+L  +       +  +      +  +           ++  +            
Sbjct: 1   MKKIKILLVDDHSLMRQGLKQIIELEKDMEVIGQAGDGEEALEKVKQVC----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +       ++R +   +        +    +                
Sbjct: 50  ----PDVILLDINMPKLNGIQVLRRLKDMD--------KTTKVIMLTFHEDREYLFETIN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y     +   +   +  +      I      ++      + N    +     ++ 
Sbjct: 98  LGANGYVLKDAESDSLIKAIRDVAMGESYIHPSLASQL----VKEFNRRDDHHDKEPREG 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E LT I+EG+ + EIA  L IS  TV N++++I +K     R+ A  YA ++N
Sbjct: 154 KLTKREYEVLTLIAEGQNNKEIASNLFISEKTVKNHVSNIFKKIHVNDRTQAAIYAYKHN 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila]
          Length = 260

 Score =  148 bits (373), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P++    +                    G+ N     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             +D +    LT
Sbjct: 125 LHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TV  ++  + RKT + TR  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSGIL 243


>gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 229

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 30/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVEL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNNRTQAV 217

Query: 238 AYAVRNNIV 246
             A++N  V
Sbjct: 218 VVAIKNGWV 226


>gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 238

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 83/234 (35%), Gaps = 16/234 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSEFLIVKNEYQLFEIVKSTASKLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                   K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYLEQHYVKIDPTVQHCMVSLQPLVWSSQSAKTQEEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVH---WGKDFELTGREVE 192
             R  L L     ++  +++  +   +  L+    +              +  LT RE E
Sbjct: 125 GTRGMLTLARSSDQLSEKEQKAQYTNMYWLSQTVHSSIAKVVNEMEFAQFNLYLTNREKE 184

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV   ++
Sbjct: 185 ALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894]
          Length = 241

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R ++  R   +  +      +   T+ +   +F L         +    + + +P   + 
Sbjct: 10  RREMTTRFQEIQDSSDIYSLLKTETQNMEYDYFALCVRHPVPFTRPKLTLHTTYPEAWLE 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL---------PENITPPAGMDNRYCSLTFDVAR 139
                       VL+    L  P+               N     G+            R
Sbjct: 70  HYQAENYYVIDPVLKPANYLVGPLSWNDALFAGAAEELWNAARDHGLVKGVTQCVIAPNR 129

Query: 140 IRIGLMLLF--PKGRIILRD--RLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECL 194
            +  L +    P+G  +  D   L    L+      M +         + +L+ RE E L
Sbjct: 130 AQGFLSVSGTSPRGHSMADDELALRLQHLVEQSLVTMMRLEDPAATVLEMKLSKREKEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 QWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGLI 241


>gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1]
          Length = 260

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 20/234 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALILPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       V++   +   P++    +                    G+ N        
Sbjct: 68  TDNHMLACDPVIRLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDV----HWGKDFELTGRE 190
            A     L  +  +     +L +    +  ++ Y                     LT RE
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDNDPKDPLTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V   
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGVSTG 241


>gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 238

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 16/234 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSEFLIVKNEYQLFEIVKSTASKLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +  K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYMEQQYVKIDPTVQHCMVSLQPLVWSSQFAKTQEEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVH---WGKDFELTGREVE 192
             R  L L     ++  +++  +   +  L+    +              +  LT RE E
Sbjct: 125 GTRGMLTLARSNDQLSEKEQKAQYTNMYWLSQTVHSSIAKVVNEVEFAQFNLYLTNREKE 184

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV   ++
Sbjct: 185 ALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 242

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
              S   +  +     G S +++           +  +++ WP                 
Sbjct: 24  DAPSLVRQFESHIASAGFSAYIMAALPAPGAGLAELTLANGWPRGWFELYVGRNYMAVDP 83

Query: 101 VLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           V +       P   +                      G+   YC            ++ +
Sbjct: 84  VPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDAAEFGLVRGYCIPLHYDDG--GAMISM 141

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +   +       + L+  Y  N  +S +    +   LT RE E L+W ++GKT+ EI+
Sbjct: 142 AGEAPDLDPTAKGAMQLIGVYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEIS 201

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IL I+  TV  ++    RK     R+ A+A A+   ++
Sbjct: 202 MILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLI 240


>gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 144

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/144 (58%), Positives = 107/144 (74%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           ++  ++F P F  LPE+   P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++
Sbjct: 1   EKCMQVFQPNFALLPESAAVPEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDV 60

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           GLLA Y A+  +       +DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI 
Sbjct: 61  GLLAGYVASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYIT 120

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S+MRKTATKTRS AIA+AVRNN+V
Sbjct: 121 SVMRKTATKTRSEAIAFAVRNNLV 144


>gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 245

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 17/235 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDLFQEQKLDSIVSSDWPFDL 86
               +  R+            +  +T++   ++F +    D       DSI+ +  P DL
Sbjct: 11  RFEPMRQRLNNCTTQFDLLRLLREVTQFHQYTYFFIASGCDGATRSLADSIIITSAPSDL 70

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL--------------PENITPPAGMDNRYCS 132
           VR    +   +   +++       P+   L               ++ +    +D  + +
Sbjct: 71  VRRYDETGLMERSPLMRALGGRGTPLQCRLDETITAFTTEQQAALDDFSAEFNIDCCFIT 130

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREV 191
             +        +  L  + + +       + ++++      +       K D  LT RE 
Sbjct: 131 PVYHRDHGPAAVCFLGKRNQ-MSFSEAANLAMISSLAHQKLRRVSAQPSKADSPLTERER 189

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W S GKTS EIA IL +S +TVN+Y+ +  RK     R+ A+A A+R   +
Sbjct: 190 ECLVWTSSGKTSVEIARILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIRQGFI 244


>gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 246

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 17/229 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
            L+  +  +        R++   ++VG + F + R     ++   +++ + WP D +   
Sbjct: 14  ALIDALDEVRDPFEAQTRIFEHIQHVGFTSFTITRLPRPSDRLGPNMLFNMWPKDWLTHY 73

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDV 137
                 ++  V+++      P                    +     G+   +C    D 
Sbjct: 74  DRVGHYRFDPVVRQCYRTTEPFAWSEVPFDADQPDRARRVMDEAAAFGLGFGFCIPVHDA 133

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECL 194
              + G+ L   +   +       + +L  Y             +      L+ RE + L
Sbjct: 134 LGFQGGVSLAG-ERIDLSPKIRRGLHMLGLYAWGAATRTTEDRRRSEPGRLLSARERDVL 192

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +W + G+T +EIA ILG+S  TV  ++ S   K   +  +  +  A+R 
Sbjct: 193 SWAAMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVEALRK 241


>gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 234

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ + S +     +    
Sbjct: 1   MAPLLNAADEAEWFGVITGLAETWGFDRILVAMLPRPTMRLEDAYLRSTYAPAWRQTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIRI 142
                    +        P+  T                   G+            +   
Sbjct: 61  QGMVHIDPTVAHCLSRSAPLIWTPEIFATPAQQSLYEEARSYGLGAGVTLPIHGPNQEAG 120

Query: 143 GLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
            +  +                L  + LL     +  K +     +    +LT RE ECL 
Sbjct: 121 MMCFVNDDKPADGFRRHVNAALPNLVLLRDLVIDTSKQHLDSHAQSLMPKLTPRERECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRRAAAVIAAQLGLI 231


>gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 230

 Score =  146 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 17/230 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-QKLDSIVSSDWPFDLVRCMA 91
           +  +            M  LT++ GA  F+++            S V ++WP D +    
Sbjct: 1   MRELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSVITNWPADFLSEYD 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHT--------------LPENITPPAGMDNRYCSLTFDV 137
           ++       +  R      PV                 L  ++    GM    C    D 
Sbjct: 61  MASLLSSSPMFNRLRNTSIPVVFDVHVVARERDPKTVELATDLFLRFGMPRGACFPVHDA 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
              R  + +   +        +  +  LA +  N          +  E LT RE+ECLTW
Sbjct: 121 HGNRGAVNICG-EMPAFSFVDMVLLQYLAGHVFNRLAEIRELDARVTETLTEREIECLTW 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GKTS EIA I+G+S +T+N+Y+    RK  T  R+ A+A A+R +++
Sbjct: 180 TAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229


>gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 19/232 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +       + + R++  + T              G     ++         +D  +  
Sbjct: 6   AIIDDHQLFREGVKRILEFEKTFEVVAEGE-----DGEEALDIIEKYHPDVVLMDINMPH 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 +   +                 Y     D   +
Sbjct: 61  QNGVEATRKLIE--------AYPETKIIILSIHDDESYVTHALKSGATGYLLKEMDSDAL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECL 194
              + ++   G  +       +       +N +      +           LT RE E L
Sbjct: 113 IEAVKVVAEGGSYLHPKITHNLVEEFRKLSNRYTPGGTYQQPPAVVPPLHLLTPRECEVL 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++GK++  I   L IS  TV N++++I++K   K R+ A+  A++N  V
Sbjct: 173 QLLADGKSNRAIGDALYISEKTVKNHVSNILQKLKVKDRTQAVVTAIKNGWV 224


>gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 17/230 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-QKLDSIVSSDWPFDLVRCMA 91
           +  +            M  LT++ GA  F+++            S V ++WP D +    
Sbjct: 1   MRELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSVITNWPADFLSEYD 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHT--------------LPENITPPAGMDNRYCSLTFDV 137
           ++       +  R      PV                 L  ++    GM    C    D 
Sbjct: 61  MASLLSSSPMFNRLRNTSIPVVFDIHVVARERDPKTVELATDLFLRFGMPRGACFPVHDA 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
              R  + +   +        +  +  LA +  N          +  E LT RE+ECLTW
Sbjct: 121 HGNRGAVNICG-EMPAFSFVDMVLLHYLAGHVFNRLAEIRELDARVTETLTEREIECLTW 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GKTS EIA I+G+S +T+N+Y+    RK  T  R+ A+A A+R +++
Sbjct: 180 TAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229


>gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 246

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 95/245 (38%), Gaps = 17/245 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDS 76
           Q+T   +      D +  +  L+        +  LTE  G   F+++        +    
Sbjct: 2   QKTETAAVQSIGVDCVREIAGLNTQFDIFRFLKRLTEAWGFKAFMVLDLSAEMASELSQC 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP------------- 123
            + + WP +L++        +   V+ +  +   P   +L   ++               
Sbjct: 62  TIITSWPAELLQRYDEEGMLQRSLVMAQLKKSTTPFSVSLDFLVSGDENAPKKPVIGLFE 121

Query: 124 -AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              M N       D+  +R  +         +   +L E+  ++++             +
Sbjct: 122 RFDMINSVWFPVHDITTMRGAVSF-SGNKTTLPTSQLAELFYISSHIFARLSEIRRLDLR 180

Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             E L  RE++CL W + GKTS EIA I+ +S +T+N+Y+    +K  T  R+ A+A A+
Sbjct: 181 VPETLNEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKAL 240

Query: 242 RNNIV 246
           R  ++
Sbjct: 241 RVGLI 245


>gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 260

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 20/239 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + L     +         +   T  +G  ++          Q+   ++ +  P   V
Sbjct: 5   QQLEYLEHFTTVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWV 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSL 133
           +    +       ++Q   +   P +    +                     + +     
Sbjct: 65  QAYTANHMLACDPIIQLARKQTLPNYWNRLDERARFLPEGSPDVMGLAAEFRLRHGISFP 124

Query: 134 TFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LT 187
               A     L  +  +     +L +    +  ++ Y             ++ E    LT
Sbjct: 125 LHGAAGENRILSFITAERASSDLLLESSPILSWMSNYIFQAAIRIVRVSLREDEPQEALT 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 185 DRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243


>gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1]
 gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1]
 gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1]
          Length = 238

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 16/234 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSASLMVKNEYQLFEVVKSTASKLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +  +    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYVKQQYVRVDPTVQHCMLSLQPLVWSSQSANTQSQKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVH---WGKDFELTGREVE 192
             R  L L     +++ +++  +   +  L+    +              +  LT RE E
Sbjct: 125 GTRGMLTLARSTDQLLEKEQKAQYTNMFWLSQTVHSSIAKIVNETEFAQFNLYLTNREKE 184

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV   I+
Sbjct: 185 VLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGIL 238


>gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905]
 gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus
           C3-41]
 gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905]
 gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 17/229 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       + + R++  + T              G     L   +      +D  +   
Sbjct: 6   IVDDHQLFREGVKRILDFEDTFDVVAE-----GDDGTDVVTLYAENEPDVVLMDINMPGK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +    +                 +   +                 Y     D   I 
Sbjct: 61  NGVEATSELINE--------FPDAKVIMLSIHDDETYVTHALKSGALGYMLKEMDADEIV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKDFEL-TGREVECLTWI 197
             + ++   G  +       +       +      +       + F L T RE E L  +
Sbjct: 113 EAIKVVANGGSYLHPKVTKNLVAEFKRLSEHENKGNFHQTEIRRPFHLLTKRECEVLQLL 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N  V
Sbjct: 173 TDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKNGWV 221


>gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032]
 gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032]
          Length = 229

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 30/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVEL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAV 217

Query: 238 AYAVRNNIV 246
             A++N  V
Sbjct: 218 VVAIKNGWV 226


>gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
 gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
          Length = 211

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 77/242 (31%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   +++  + +     +  L    + +  +      +     +          HF   
Sbjct: 1   MKPTKVLVADDHDLVREGICKLLELYEDIKVVGEAGDGLETVKGVR--------DHF--- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        ++ +           ++        +            
Sbjct: 50  ----PDLVLLDLNMPRMGGITAIKKIKE-----ISPGIKVL---ILTIHDEEEYVYEVIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         ++  +  +    ++  R    E+           +       +  
Sbjct: 98  SGAEGYIQKDVKPEELKRAIDKVIKGDKVFPRSTENEV-----------REVVNEKYEVC 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L  +++G ++ +IA  L IS  TV N++++I+RK +   R+ A+  A++  
Sbjct: 147 ELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRG 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria]
 gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 239

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    + + +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MARYQAQNYIEIDSTVRDGAMSTNMIVWPDVDRIDPCPLWQDARDYGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPESSVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLRWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 261

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 21/237 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGL-MLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGR 189
            A     +   +  +     +L +    +  ++ Y             ++ +    LT R
Sbjct: 128 AAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 187

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244


>gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 234

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ V S +     R    
Sbjct: 1   MAPLLDAADEAEWFGAIAGLAETWGFDKLLIAMLPRPTIRLEDAYVRSTYSPTWRRTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRI 142
                    +        P+  +                   G+ +          +   
Sbjct: 61  QGLVHIDPTVAHCATRATPLIWSPDIFKTAPQLSMYEEARAHGLRSGITLPIHGPNQEAG 120

Query: 143 GLMLLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
            +  +                L  + LL     +  + +     +    +LT RE ECL 
Sbjct: 121 MMCFVNDNNPNDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 231


>gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       +  +      +A +                    G     L 
Sbjct: 1   MDKIRVLIADDHTMVRQGLKQILELEKDMAVIAQAPN---------------GEEAIRLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +        ++ M                 +   +            
Sbjct: 46  KECSPDVILMDINMPGMNGLQAIKEMKADNIP--------SRIIVLTIHEDREYLFKTLQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   +   +  +      I  +   E+      + N    +D    ++ 
Sbjct: 98  MGAEGYVLKDADPVVLVEAIRSVNRGQSYIQANMTREL----VREFNKITLHDKSKSEES 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REVE L  I+EG  + EIA  L IS  TV N++++I RK     R+ A  YA ++N
Sbjct: 154 NLTAREVEVLELIAEGMINKEIAKRLYISEKTVKNHVSNIFRKLNVSDRTQAAIYAFKHN 213

Query: 245 I 245
           +
Sbjct: 214 M 214


>gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media]
          Length = 260

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHLTLVTDGNRLAEVIGRFTLGMGYDYYRFALILPTSMQRRKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSLT 134
              ++       ++Q       P++    +               +    G+ N      
Sbjct: 66  AYTVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTG 188
              A     L  +  +     +L +    +  ++ Y         +           LT 
Sbjct: 126 HGAAGENGILSFITRERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEALTE 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W S+GKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFWASDGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKRVSSGIL 243


>gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1]
 gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1]
          Length = 216

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 75/240 (31%), Gaps = 32/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +    D +  +           ++  L               
Sbjct: 2   IKLMLVDDHAVLRDGLKTILESEDDINVVGEAVSGSDALSKVREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++ + +                 L   +       +       
Sbjct: 47  DPDIILMDINMPGMNGVEVTKVLKQQ--------YPHIKVLMLTMHSHEEYFMAAIKEGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-EL 186
           + Y        ++   +  +F    +I      ++          F   +    +D   L
Sbjct: 99  DGYLLKDAPSEQVVEAVRTVFSGESVIHPSLTRKLLT--------FHQQNQRQDRDDNSL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  + EG ++ EI   L +S  TV  ++++I +K   K+RS  + YAV+N +V
Sbjct: 151 TEREREVLGCLVEGLSNKEIGKRLYVSDKTVKIHVSNIFKKLNVKSRSQVVIYAVQNKLV 210


>gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 239

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    + + +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MARYQAQNYIEIDSTVRDGALSTNMIVWPDVDRIDPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGLI 236


>gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
 gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis
           ZC1]
          Length = 224

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 17/229 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       + + R++  + T              G     L   +      +D  +   
Sbjct: 6   IVDDHQLFREGVKRILDFEDTFDVVAE-----GDDGTDVVTLYAENEPDVVLMDINMPGK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +    +                 +   +                 Y     D   I 
Sbjct: 61  NGVEATAELITE--------FPDAKVIMLSIHDDETYVTHALKSGALGYMLKEMDADEIV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKDFEL-TGREVECLTWI 197
             + ++   G  +       +       +      +       + F L T RE E L  +
Sbjct: 113 EAIKVVANGGSYLHPKVTKNLVAEFKRLSEHENKGNFHQTEIRRPFHLLTKRECEVLQLL 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N  V
Sbjct: 173 TDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKNGWV 221


>gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii]
          Length = 260

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIFPMSMQRPKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A     L  +  +     +L +    +  ++ Y             ++ +    LT RE
Sbjct: 128 AAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + ++
Sbjct: 188 TECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGML 243


>gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY]
 gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName:
           Full=Protease production enhancer protein
 gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis]
 gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis]
 gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis]
 gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens
           FZB42]
 gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42]
 gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis]
 gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 229

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 30/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVEL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAV 217

Query: 238 AYAVRNNIV 246
             A++N  V
Sbjct: 218 VVAIKNGWV 226


>gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R D   R   L         +   T+ +   ++ L         +    V + +P   + 
Sbjct: 10  RRDCFLRFQALTSASEVYQELQRQTQALEFDYYALCLRHPVPFTRPRISVHATYPQRWMA 69

Query: 89  CMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNR----------YCSLTFD 136
                       VL+     +   P    L  +                           
Sbjct: 70  QYQSENYFAIDPVLKPENFIQGHLPWTDELFADAEALWNGARDHGLRKGITQCLMLPNHA 129

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLT 195
           +  + +    +           L    LL     ++ +   ++    + + + RE E L 
Sbjct: 130 LGFLSVSCTSVQAGAVTSEELELRLQMLLQMALTSLLRFEDEMVMPPEMKFSKREREILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
 gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 17/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             +    +    + AL   +   +FL            ++I++ ++P    +    +   
Sbjct: 12  QVITSYENLESTLAALNNIIDHEYFLFGLSLQPTLTTSETIITDNYPASWRQQYDEAGFM 71

Query: 97  KYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               ++Q     F P+                      G+   +      +      L  
Sbjct: 72  HVDPIVQYSMTNFLPIRWSQIPVASNQAHEMFEEARINGLKEGFSIPIHGLRGEFGMLSF 131

Query: 147 LFPKGR------IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                R        ++     I LL+    N+ + +     +  ELT RE +CLTW +EG
Sbjct: 132 ATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPR-IELTARENQCLTWAAEG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ EIA I+  S  TV  +IA+  +K     R  AI  A+    +
Sbjct: 191 KSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236


>gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus
           oremlandii OhILAs]
 gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           oremlandii OhILAs]
          Length = 224

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 27/243 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             ++++N+++  +       +  +      +  +                    G    L
Sbjct: 6   KSVKKINVLIADDHALVRQGLKQIIELEPDIKVIGLAAD---------------GEEAVL 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             +        LD  +        +R           + ++    +              
Sbjct: 51  KTQQLSPDVVLLDISMPKQNGIQTLRR-----LKDMDSTIKI---IMLTFHEDREYLFET 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N Y     +   +   +  ++     I      E+      + N  +        
Sbjct: 103 INLGANGYVLKDAESESLIKAIRDVYQGLNYIYPTLATEL----VKEFNRREVKSQKRNN 158

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE E LT ++EG  + EI   L IS  TV N++++I +K     R+ A  YA +
Sbjct: 159 EDELTRREYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYK 218

Query: 243 NNI 245
           +NI
Sbjct: 219 HNI 221


>gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
 gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2]
          Length = 211

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   ++    M  + E  G++       D+  +   D I+      
Sbjct: 3   QVLLVDDHAILRDGLKTLIAQEEDMEVIGEATGSTQL----IDMLPKVAPDIIMMDINMP 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +            Y  ++    +   +++     +       + Y         +   +
Sbjct: 59  QMNGIELTRWVKSNYPSIK---VIVLTMYNNDEYFMAAIREGADGYLLKDSPSKDVIDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +I      ++  +   + N          +D  LT RE+E L  + EG ++ 
Sbjct: 116 RTVAGGESVIPPGMTKKLLSMHKQENNQ---------EDKTLTPREMEVLLVLVEGLSNK 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L IS  TV  ++++I +K   K+RS AI +AV+NN+V
Sbjct: 167 DIATRLYISDKTVKIHVSNIFKKFDVKSRSQAIIFAVQNNLV 208


>gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    + + +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MARYQAQNYIEIDSTVRDGALSTNMIVWPDVDRIDPCPLWQDARDYGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
 gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia]
 gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa
           AUO158]
          Length = 239

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYHQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +            + ++        +          +         G+       +   A
Sbjct: 63  MAHYQAKNYIDIDSTVRDGALSTNMIVWPDVDGADSSPLWRDAREFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +  +   +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARRADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEASVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 239

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    + + +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +                    G+       +   A
Sbjct: 63  MARYQAQNYIEIDSTVRDGALSTNMIVWPDIDRIDPCPLWQDARDYGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPESSVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236


>gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
 gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062]
          Length = 239

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 86/236 (36%), Gaps = 16/236 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    + +  +   +     + R+  L +  G + F L            SI+ S W  +
Sbjct: 4   LTAALEFVESINNEETPDGVSKRIAELGQSFGFTSFCLAAIPEAGASFDGSIMLSGWRPE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRYCS 132
             +     +  +   ++ +      P   +                      GM +  C 
Sbjct: 64  WQQRYLDRDYVQNDPIVAKARTASRPFLWSSVARDRNLTAAAQQVLSEARDYGMYDGVCV 123

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGRE 190
               +   +  L+   P+   +    +  + L+  Y +N  +             LT RE
Sbjct: 124 PVHGLQGYQGMLIFGGPE-VRLNEREISVLHLVGIYASNKVRELVGANTNRPRHRLTPRE 182

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +ECL W + GKTS EI+ IL IS++T + Y+AS  RK     R+ A+A   R  ++
Sbjct: 183 LECLKWSAAGKTSWEISQILNISQHTADWYLASAARKLHAANRTHAVAEGFRLGLI 238


>gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 303

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +       +  +  +   +  +                    GA      
Sbjct: 84  VDPIKVLVADDHALFRRGLEMVLRQEPDIQLVAEASD---------------GAEAVARA 128

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     LD  +      +    +          V      +   +     +      
Sbjct: 129 AETLPDVVLLDVRMPKRTGIEACAAIKE--------VCPSAKIIMLTISDEEADLYEAIK 180

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y      +  +   +  +     +I      ++  L  + + + +    H     
Sbjct: 181 AGAMGYLLKEISIDEVAAAIRAVHGGQSLISPSMASKL--LNEFASLIKRGDARHQVPAP 238

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+E L  +++G  + +IA  L IS NTV N++ +I+ K    +R  A+ YAVR  
Sbjct: 239 KLTEREMEVLRLVAKGLNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAVREK 298

Query: 245 IV 246
           ++
Sbjct: 299 LL 300


>gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 243

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 20/238 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPF 84
              + + ++       +   R+  +T   G +  +            Q+   ++  DWP 
Sbjct: 6   RTLEYIDQLQHAATAAAVCERLLGITSDFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPG 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYC 131
           + +          +  V+    +L  P                           + +   
Sbjct: 66  EWLERYVARNYVDHDPVVSHMKQLQAPFQWHEASQGIRIDKSSGEVMGDAGAFKLRDGLA 125

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTG 188
                +    + + L   +   +      ++ L++ Y             +  +   LT 
Sbjct: 126 FPLITLDGQIVMVSL-GGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMANRTIDHIVLTP 184

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 185 RERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila]
          Length = 261

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 84/237 (35%), Gaps = 21/237 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+   ++ +  P   V+  
Sbjct: 8   EYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    +                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGL-MLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGR 189
            A     +   +  +     +L +    +  ++ Y             ++ +    LT R
Sbjct: 128 AAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDR 187

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 188 ETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244


>gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416]
 gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia]
 gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAHNYIEIDSTVRDGALSTNMIVWPDVDQIEPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 234

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ V S +     R    
Sbjct: 1   MAPLLNAADEAEWFGTIAGLVETWGFEKLLIAMLPRPTIRLEDAYVRSTYSPIWRRTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRI 142
                    +        P+  +                   G+            +   
Sbjct: 61  QGLVHIDPTVSHCATRATPLIWSPDIFTTAPQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120

Query: 143 GLMLLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
            +  +                L  + LL     +  + +     +    +LT RE ECL 
Sbjct: 121 MMCFVNDSNPNDEFWQHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 239

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFRQIAAYSKRLGFEYCCYGIRVPLPISKPAVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   N     G+       ++   
Sbjct: 63  MERYQEMNYLEVDPTVRDGALSTNMIVWPEASRSDGTTLWNDARDHGLAVGVAQSSWAPR 122

Query: 139 RIRIGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +   L +     R+   +          +  ++    + F    +       LT RE E
Sbjct: 123 GVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 183 VLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 255

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + +A ++      +W   +  L E  G    L+        +  D+ V S +     R  
Sbjct: 20  EQMAPLLDAADEAAWFGAVADLAETWGFDRLLIAMLPRPTIRLEDAYVRSTYAPAWRRTY 79

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARI 140
                      +        P+  +                   G+            + 
Sbjct: 80  DEQGLVHIDPTVAHCATRSTPLVWSPEIFITAPQRSMYEEARAHGLRAGVTLPIHGPNQE 139

Query: 141 RIGLMLLFPKGRIIL-----RDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVEC 193
              +  +                L  + LL     +  + +     +    +LT RE EC
Sbjct: 140 AGMMCFVNDANPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHTHTQTLLPKLTPREREC 199

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 200 LQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAAVIATQLGLI 252


>gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans ATCC BAA-247]
          Length = 239

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
             R D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRRQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------PPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAHNYIEIDSTVRDGALSTNMIVWPDVDQIAPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 210

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 21/217 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D +     L   +     M  + +   G   + L + +      +D  + +       
Sbjct: 7   ADDHVLLRQGLKQIIELEEDMKVVYQASDGEEAYNLAKNNSPDIILMDINMPNVNGIKAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +  ++             +F  +++     +         Y     D   +   + ++
Sbjct: 67  KMIKSNDPKN--------KIMFLTIYNDKEYLMEALKIGVEGYILKDADSDELIKAIRII 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  I    + EI  L                   +LT RE E L  I+EG ++ EIA
Sbjct: 119 SNGGVYIHPSLIREIESL------------EKNECKKDLTDREFEILNLIAEGYSNKEIA 166

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +S  TV N++ +I RK   K R+ A  Y ++NN
Sbjct: 167 DKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203


>gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 229

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 73/248 (29%), Gaps = 30/248 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVEL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAV 217

Query: 238 AYAVRNNI 245
             A++N  
Sbjct: 218 VVAIKNGW 225


>gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
 gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2]
 gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           multivorans CGD2M]
          Length = 239

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D        +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYDEFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++  T     +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGTLSTNMIVWPDVDKIEPCPLWRDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236


>gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
          Length = 239

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFRQIAAYSKRLGFEYCCYGIRVPLPISKPAVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   N     G+       ++   
Sbjct: 63  MERYQEMNYLEVDPTVRDGALSTNMIVWPEASRSDETTLWNDARDHGLAVGVAQSSWAPR 122

Query: 139 RIRIGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +   L +     R+   +          +  ++    + F    +       LT RE E
Sbjct: 123 GVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 183 VLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans
           2-40]
          Length = 247

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRC 89
           +L + +       +         E VG   ++             +I   S++P +  + 
Sbjct: 8   ELCSALCEATDEETLKELCLKFCELVGFEFYIFGIISSASSLSSPTISTISNYPDEWFKN 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPEN--------------ITPPAGMDNRYCSLTF 135
                  ++  V++   +    +      +                  +G+ +       
Sbjct: 68  YFEEGMQRHDPVVRYCMQNTSAIRWRQLMDLEHYVDAIGEKIMIRASESGLCDGLSIPIK 127

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-----HWGKDFELTGRE 190
             +       L   +   + +     +    ++   +F+ Y          K   LT RE
Sbjct: 128 APSGEIAIFSLASNREEGLNQRINACLPFAQSFGTQVFECYSALMLKLAQNKQTHLTARE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W  EGKT+ EI+ IL +S  TV  +++S   K     R  A+A A+ + ++
Sbjct: 188 KESLFWACEGKTTWEISKILDVSERTVIFHLSSATSKLGAVNRQHAVAKAILSGLI 243


>gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 238

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 15/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-LDSIVSSDWPFDLVRCMALSE 94
           +        W   +  +    G +H  L+R    Q    L  +V S  P  +V  M    
Sbjct: 14  LSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWVVNAMTKDG 73

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRI 142
                 V++R      P + +L +                  G+ +        ++  R 
Sbjct: 74  ALGDCPVIKRGASSMMPQYWSLEDPEMACGSLVDAVNSVGSMGITSGLMVPVNGMSGNRH 133

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGK 201
            +     +   + +  L E+ ++A +    +        K    LT RE++ + W ++GK
Sbjct: 134 LMNFAGDRDT-LPQASLNELCMIALHALETYDRLCRVASKGPSPLTKRELDVVRWTAQGK 192

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS EIA +L IS +TVN Y+ + MRK     R+  +A  +R  ++
Sbjct: 193 TSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLI 237


>gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 243

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 77/238 (32%), Gaps = 20/238 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPF 84
              + + ++       +   ++  +T   G +  +           EQ+   ++  DWP 
Sbjct: 6   RTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSEQQKQHVLLCDWPV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYC 131
           + +          +  V+    +L  P                           + +   
Sbjct: 66  EWLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLA 125

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTG 188
                +    + + L   +   +       + L++ Y             K     ELT 
Sbjct: 126 FPLITLDGQIVMVSL-GGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHIELTP 184

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 185 RERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a]
          Length = 241

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                 T  +        + +    F      +    +  + + S++P   V+       
Sbjct: 17  FSQASDTEEFKGIAMGALQELDFDFFAYGTCSVTPFMRPKTSIYSNYPEPWVQRYQAQNY 76

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+              +    + + +     +F+       L L 
Sbjct: 77  ALIDPTVKHSKLSSAPILWGNELFRECPQLWSEARDSNLCHGLAQPSFNAQGRVGLLSLA 136

Query: 148 FPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I   +            + A  + +  ++ D       E +GRE + L W ++GK
Sbjct: 137 RRNKAISAEEFEALKPVTKAFAMAAHEKLSELENDDSSLNVQVEFSGRECDVLRWTADGK 196

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGYI 241


>gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 235

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 20/241 (8%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
             +D  R   +       + + R++ ++  +             G     LVR +     
Sbjct: 5   VNQDTLRILLIDDHQLFREGVKRILTMEPGLEVVAE-----GNDGEDVVDLVRQNKPDVV 59

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      D  + +  S              L   +               + Y  
Sbjct: 60  LMDINMPGMNGVDATKTLLKS--------FPNVRVLILSIHDDESYVTHVLKTGASGYLL 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------- 185
              D   +   + ++   G  I       +       AN   +      ++ E       
Sbjct: 112 KEMDTEALIEAVKVVGNGGSYIHPKVTHNLIKEYRRLANETGNNGEIGFREVEYRRPLHL 171

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N  
Sbjct: 172 LTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKNGW 231

Query: 246 V 246
           V
Sbjct: 232 V 232


>gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 241

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 78/246 (31%), Gaps = 30/246 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     + H+    D    ++  +   +   ++   +              
Sbjct: 16  LKIMIVDDHQLFREGLKHILETEDSFEVVLEAEDGKNIVSKVREAS-------------- 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + S    D    +                 +   +  +     +      
Sbjct: 62  -PDVILMDINMPSVNGLDATEMLIRQ--------FPSAKIIMLSIHDSDEFVSSALKTGA 112

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHW 180
             Y     D   +   + +++  G  I              +   ++ Q N         
Sbjct: 113 VGYLLKEMDANELIEAIKVVYKGGAYIHPKAAIKLIREYRNLASSSSAQGNYGYRQPEVN 172

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A
Sbjct: 173 MPLHLLTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVNDRTQAVVTA 232

Query: 241 VRNNIV 246
           +++  V
Sbjct: 233 IKHGWV 238


>gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 269

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 79/255 (30%), Gaps = 19/255 (7%)

Query: 11  VLNREDEQR-TSFVSHL-PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +NRE   R    V  L     + +A ++       W   +  L+E  G    L+     
Sbjct: 12  AINREWAVREPERVKKLSLHFIEQMAPLLDAANEAEWFGVITGLSETWGFDRILVAMLPR 71

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----------PE 118
              +  D+ + S +     +         +   +        P+  T             
Sbjct: 72  PTMRLEDAYLRSTYAPAWRQAYDEQGMVHFDPTVAHCLSRSGPLIWTPEIFATPAQQSLY 131

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMF 173
                 G+            +    +  +                L  + LL     +  
Sbjct: 132 EEARSYGLGAGVTLPIHGPNQEAGMMCFVNDDKPSDGFRRHVNAALPNLVLLRDLVIDTS 191

Query: 174 KSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + +     +    +LT RE ECL W + GK++ EI+ IL  S   VN ++ +I  K    
Sbjct: 192 RQHLNSHAQTLLPKLTPRERECLKWTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVN 251

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A   A +  ++
Sbjct: 252 SRRAAAVIAAQLGLI 266


>gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 229

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 30/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVEL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAV 217

Query: 238 AYAVRNNIV 246
             A++N  V
Sbjct: 218 VVAIKNGWV 226


>gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis]
          Length = 234

 Score =  143 bits (362), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++ ++       W   +  L    G S  LL        +  D+ V S++     +    
Sbjct: 1   MSPILAASDETQWFDAVAGLAGSWGFSQVLLAILPRPGMRLEDAYVRSNYASSWRQAYTD 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRI 142
                    +   T+   P+  +                   G+            +   
Sbjct: 61  QGFAYIDPTVSHCTKHSSPLVWSPDLFATTPQKSMYEEASAHGLRAGVTLPIHGPRQEAG 120

Query: 143 GLMLLFPKGR-----IILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
            L  +            +   L  + L+     +  + +     +    +LT RE ECL 
Sbjct: 121 MLCFVNDSNPNDKFWQHIDTALPNLVLMRDLVIDTSQRHLSAHAQTLIPKLTPRERECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTALGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIATQLGLI 231


>gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 229

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 30/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVEL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAV 217

Query: 238 AYAVRNNIV 246
             A++N  V
Sbjct: 218 VVAIKNGWV 226


>gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
 gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580]
 gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis]
 gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis]
 gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis]
 gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2]
          Length = 229

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 74/249 (29%), Gaps = 30/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVDL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAV 217

Query: 238 AYAVRNNIV 246
             A++N  V
Sbjct: 218 VVAIKNGWV 226


>gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616]
          Length = 239

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D        +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYDEFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALSTNMIVWPDVDKIEPCPLWRDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPETRVALTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 16/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                    +T     +   +    F      +    +  + +  ++P D V+    +  
Sbjct: 17  FARTMDMQEFTAVTLRVLRELRFDFFAYGMCSVTPFMRPRTCMYGNYPEDWVQRYQAANY 76

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+  +           +    + + +     +F+       L L 
Sbjct: 77  AVIDPTVKHSKVSSAPILWSNELFRGCPDLWSEANDSNLCHGLAQPSFNAQGRVGMLSLA 136

Query: 148 FPKGRIILRDRLWEIGLL----AAYQANMFKSYDV---HWGKDFELTGREVECLTWISEG 200
                 I       + L+    AA         +     +  D E +GRE + L W ++G
Sbjct: 137 RKDNP-ISLQEFEALKLMTKAFAAAIHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KTS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           N1-067]
          Length = 228

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       + + R++ L+ +              G +    VR        +D  + +
Sbjct: 6   MVVDDHQLFREGIKRILELEDSFEVVAEAEN-----GKNIVAKVREYKPDIVLMDINMPT 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D    +                 +   +  T              Y     D   +
Sbjct: 61  VNGLDATEMLVRQ--------FPSIKVIVLTIHDTDEYVTEALRAGAVGYLLKEMDAHEL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREVEC 193
              + ++   G  I      ++     + A+                     LT RE E 
Sbjct: 113 VEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMPLHILTHRECEV 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  V
Sbjct: 173 LQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225


>gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 242

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 80/240 (33%), Gaps = 15/240 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS- 80
            V       D + R +  D   +    + +   + G  H     +   +    D  V + 
Sbjct: 1   MVGDNFRLGDFIERTLRADTAPALMSELKSALVHWGFPHMACGAFGEPERPLDDMSVPAV 60

Query: 81  --DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----------ITPPAGMDN 128
             D+P +  +            V+ R  + + P       +              AG+ +
Sbjct: 61  VVDYPEEWQKYYFEKNYVTIDPVITRACQAYVPYRWDQLRDLTNPQKRMFKEATEAGLRH 120

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFEL 186
                            +  P   I     L    +L     ++     +         L
Sbjct: 121 GITVPVHGPNGSIFVASVASPHTDIDHLRSLSVANVLVTQVYSVLVGMRHPGAPSAPVSL 180

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE ECL W + GK+S +I VIL IS NTVN ++ + M K    TR  AI  A+R  ++
Sbjct: 181 TARERECLIWSARGKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGLI 240


>gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis]
          Length = 239

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +                    G+       +   A
Sbjct: 63  MAHYQARNYIEIDSTVREGALSTNMIVWPDVDRIDPCPLWEDARDFGLAVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 234

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A ++       W   +  L E  G    L+        +  D+ V S +     R    
Sbjct: 1   MAPLLDAADEAEWFGAIAGLAETWGFDKLLIAMLPRPTIRLEDAYVRSTYSPIWRRTYDE 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRI 142
                    +        P+  +                   G+            +   
Sbjct: 61  QGLVHIDPTVSHCATRATPLIWSPDIFTTASQQSMYEEARAHGLRAGVTLPIHGPNQEAG 120

Query: 143 GLMLLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
            +  +                L  + LL     +  + +     +    +LT RE ECL 
Sbjct: 121 MMCFVNDSNPSDEFWRHINVALPNLVLLRDLVIDTSQRHLNTHAQTLLPKLTPRERECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAAVIATQLGLI 231


>gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
 gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum
           SV96]
          Length = 236

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 77/232 (33%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           +   L  +  + C       + + ++ +G  H               +++ +++P     
Sbjct: 5   QETQLQALQSIQCAHQLFQTILSFSKELGFDHCAYGLRMPLPLTNPKTLMFNNYPTAWQA 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARI 140
                        +Q       P+          +         G+   +   + D    
Sbjct: 65  QYQAKNYLAIDPTVQHAMRSLLPIIWTDDLFSPASDLWEEACSFGLRVGWAQSSRDFNGF 124

Query: 141 RIGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L      I   +       +  +  +A    +   +  +    +  L+ RE+E L
Sbjct: 125 VGMLTLARSNEPITEIELDANKFKMAWLTQVAHLGMSRCLTPKLMQEVNVTLSNREIEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL I+  TVN +I +++ K     ++ A   A    ++
Sbjct: 185 RWTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAAMLGLL 236


>gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262]
 gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e]
 gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes
           Clip81459]
 gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes
           10403S]
 gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes
           J0161]
 gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-064]
 gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28]
 gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J1-175]
 gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e]
 gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262]
 gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str.
           1/2a F6854]
 gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b
           H7858]
 gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes]
 gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N3-165]
 gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503]
 gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900]
 gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578]
 gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923]
 gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J2-071]
 gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes
           HPB2262]
 gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818]
 gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           J1-194]
 gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL
           N1-017]
 gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           S4-378]
 gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL
           J1-023]
 gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816]
 gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220]
 gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       + + R++ L+ +              G +    VR        +D  + +
Sbjct: 6   MIVDDHQLFREGIKRILELEDSFEVVAEAEN-----GKNIVAKVREYKPDIVLMDINMPT 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D    +                 +   +  T              Y     D   +
Sbjct: 61  VNGLDATEMLVRQ--------FPSIKVIVLTIHDTDEYVTEALRAGAVGYLLKEMDAHEL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREVEC 193
              + ++   G  I      ++     + A+                     LT RE E 
Sbjct: 113 VEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMPLHILTHRECEV 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  V
Sbjct: 173 LQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225


>gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       + + R++ L+ +              G +    VR        +D  + +
Sbjct: 6   MVVDDHQLFREGIKRILELEDSFEVVAEAEN-----GKNIVAKVREYKPDIVLMDINMPT 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D    +                 +   +  T              Y     D   +
Sbjct: 61  VNGLDATEMLVRQ--------FPSIKVIVLTINDTDEYVTEALRAGAVGYLLKEMDAHEL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREVEC 193
              + ++   G  I      ++     + A+                     LT RE E 
Sbjct: 113 VEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMPLHILTHRECEV 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  V
Sbjct: 173 LQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225


>gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
 gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP
           69.14]
          Length = 240

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 15/223 (6%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +D   +    +  +   +   +FL            D++++ ++P    +    S+    
Sbjct: 14  IDSFQALQPTLAKMNHLIEHEYFLFGLSLQTTLTSNDTLIADNYPLAWRQQYDESQFMLI 73

Query: 99  YNVLQRPTELFCPVFHTLPEN----------ITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             +++     F P+  +                   G+   +      +      L    
Sbjct: 74  DPIVRYSMTNFLPIRWSEIRAHHQDSQIIFEEARLNGLKEGFSIPVHGLRGEFGMLSFAT 133

Query: 149 PKGR-----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              R     +        +  L A   +             ELT RE +CL+W +EGK++
Sbjct: 134 SDTRHYDLNLPAIQASQLLVPLLAQNIDNIVRCHRDAKPRAELTCREGQCLSWAAEGKSA 193

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA I+  S  TV  ++++  +K     R  AI  A+    +
Sbjct: 194 WEIAQIINTSERTVKFHLSNACKKLGATNRYQAITKAILGGYI 236


>gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii]
          Length = 243

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 20/238 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPF 84
              + + ++       +   ++  +T   G +  +            Q+   ++  DWP 
Sbjct: 6   RTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPSGQQKQHVLLCDWPV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYC 131
           + +          +  V+    +L  P                           + +   
Sbjct: 66  EWLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSDEVMGDAGAFKLRDGLA 125

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTG 188
                +    + + L   +   +       + L++ Y                   ELT 
Sbjct: 126 FPLITLDGQIVMVSL-GGEAVQLSGAEFGLVSLVSTYAVGRAMQIHTMATSTIDHIELTP 184

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 185 RERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 237

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                     +   A    +G  +            K   ++ S++P   V         
Sbjct: 13  ATAKSEADVFLEFTADVRALGFEYCSFGLRVPLPVSKPQFMLQSNYPQTWVDRYVSQNYF 72

Query: 97  KYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                ++       P+              +     G+ + +C  +         + ++ 
Sbjct: 73  AVDPTVRHGLSQMSPLIWRADSQTQSVEFWDEAEHHGLRHGWCMPSISRTGAIGLVTMVR 132

Query: 149 PKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I    L E       +  +A Y  +M            ELT RE E L W + GK
Sbjct: 133 SGEP-IDERELAEKGYQMSWLANMANYAMSMHLLAKFVPEYAVELTARERETLQWSAAGK 191

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI  I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 192 TYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236


>gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       + + R++ L+ +              G +    VR        +D  + +
Sbjct: 6   MIVDDHQLFREGIKRILELEDSFEVVAEAEN-----GKNIVAKVREYKPDIVLMDINMPT 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D    +                 +   +  T              Y     D   +
Sbjct: 61  VNGLDATEMLVRQ--------FPSIKVIVLTIHDTDEYVTEALRAGAVGYLLKEMDAQEL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREVEC 193
              + ++   G  I      ++     + A+                     LT RE E 
Sbjct: 113 VEAVKIVENGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMPLHILTHRECEV 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  V
Sbjct: 173 LQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225


>gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 239

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    + + +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALSTNMIVWPDVDRIDPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 239

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A T+ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFQQIAAYTKRLGFEYCCYGIRVPLPISKPVVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   +     G+       +   +
Sbjct: 63  MERYQEMNYLEVDPTVRDGALSSNMIVWPEASANDATTLWSDARDHGLAVGVAQ-SSWAS 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTGREV 191
           R   GL+ +      +    +  + L A + ANM  S                 LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 218

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 75/222 (33%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +S   R+  + E   G       R        +D  +      
Sbjct: 7   LLIADDHALIREGLRKILSIEPRINVVGEVTDGQQAVEFCRQQPVDIVLMDINMPVMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +          R   +   +               + Y        ++   +
Sbjct: 67  EACRLIKQNN--------PRVGIIALTIHDQDEYLFELIKYGISGYVLKDVHPDQLIQTI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +      I      ++      + +   S D H  K   LT RE+E L  +++G+++ 
Sbjct: 119 LGVARGESFIPPALTAKV----LAEFSRLTSVDHHDKKHSTLTERELEVLKQVAKGQSNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L IS  TV N++ +I +K     R+ A  YA++  +V
Sbjct: 175 DIAKTLFISEKTVKNHLTNIFQKIGVADRTQAALYAIKEKLV 216


>gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 231

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 75/248 (30%), Gaps = 30/248 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +QV +V+  + +     V  +    +    +   +                GA    LV 
Sbjct: 4   EQVKVVIIDDHQLFREGVKRILDFEEEFVVVAEGES---------------GADVIPLVE 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  + +          V      +   +       +     
Sbjct: 49  AHQPDIVLMDINMPKVNGVEATKRLME--------VHPEVRVIILSIHDDETYVMHALGA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------NMFKSYDV 178
               Y         +   +  ++ +G  +       +               +      V
Sbjct: 101 GAVGYLLKEMATDELVNAIRSVYREGGYVHPKVTPNLLQEYRRLMKMKQTMSSQPIEKRV 160

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE E L  +++G ++  I+  L IS  TV N+++SI+RK     R+GA+ 
Sbjct: 161 AEAPLHVLTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVV 220

Query: 239 YAVRNNIV 246
            A+R   V
Sbjct: 221 EAIRRGWV 228


>gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           stabilis]
          Length = 239

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
             R D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRRQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +                    G+       +   A
Sbjct: 63  MARYQAQNYIEIDSTVRDGALSTNMIVWPDVDRSDPGPLWQDAREFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINILTLQTNWLASLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC
           11218]
          Length = 240

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 17/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             +    +    + AL   +   +FL            +++++ ++P    +    +   
Sbjct: 12  QVITSYENLETTLAALNNIIDHEYFLFGLSLQPTLTTSETLITDNYPASWRQQYDEAGFM 71

Query: 97  KYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               ++Q     F P+                      G+   +      +      L  
Sbjct: 72  HVDPIVQYSMTNFLPIRWSQIPVASNQAHEMFEEARINGLKEGFSIPIHGLRGEFGMLSF 131

Query: 147 LFPKGR------IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                R        ++     I LL+    N+ + +     +  ELT RE +CLTW +EG
Sbjct: 132 ATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPR-IELTARENQCLTWAAEG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ EIA I+  S  TV  +IA+  +K     R  AI  A+    +
Sbjct: 191 KSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236


>gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 239

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    + + +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALSTNMIVWPDVDRIEPCPLWQDARDYGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLAPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida]
          Length = 238

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 14/227 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L R+  ++    W   +  LT  +G S+FL+       +     ++ SD+P       
Sbjct: 7   DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARI 140
                     V+Q       P+                      G+              
Sbjct: 67  DAESYAAVDPVVQHCLNANRPLLWDRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRGE 126

Query: 141 RIGLML----LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              L L      P+    + + L    LL  Y         +       LT RE E L W
Sbjct: 127 AGMLCLKPFESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQW 186

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + GKT+ EI++IL  + + ++ +  +I RK    +R  A+  A++ 
Sbjct: 187 SAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233


>gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 11/227 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P        ++  +  ++            GA+   L R  L     +D  +
Sbjct: 4   RVLLVDDQPLLRTGFKLILEAESDLTVVGEAG-----DGATAVELTRTMLPDVVLMDIRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +       +   +   T      F      I       + +        
Sbjct: 59  PGMDGIEATRRIVREGAAAHDPRVLILTT-----FDLDEYVIEAVRAGASGFLLKDAPPE 113

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   + ++     I+       +    A +    +      G +  LT RE E L  ++
Sbjct: 114 DLVSAIRIVAAGDAIVAPSVTRRLLDKFASRLPSMRQTPPPPGLET-LTEREREVLKHVA 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G ++ EIA  L +S  TV  ++ +++ K   + R  A+ YA    +
Sbjct: 173 RGLSNAEIARELVVSETTVKTHVGNVLAKLGLRDRVQAVVYAYETGM 219


>gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +  D  R   V         L  ++  +  +             G+    +         
Sbjct: 13  SSPDPIRVLVVDDHALFRRGLQMVLEQEKDIEVVGEA-----PDGSEAVTMAVDTAPDIV 67

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      D    +           +     +   +     +           Y  
Sbjct: 68  LMDVRMPRRGGIDATSAIKQ--------AVPSAKIVMLTISDEEGDLYDAIKAGAMGYLL 119

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               +  +   +  +     +I      ++  L+ +   + K+          LT RE+E
Sbjct: 120 KEISIDEVATAIRAVHGGQSLISPSMASKL--LSEFALMIKKADSRPQLPTPRLTDREME 177

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  ++
Sbjct: 178 VLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 231


>gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 210

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     L   +     M  + +   G   + + +        +D  + +    
Sbjct: 4   ILIADDHVLLRQGLKQIIELEEDMKVIYQASDGEEAYEIAKKISPDIILMDINMPNINGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +                 +F  +++     +         Y     D   +   +
Sbjct: 64  KAAKMLKNDNPKN--------KIMFLTIYNDKEYLMEALKIGVEGYILKDADSDELIKAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  I                +  ++ D    K  ELT RE++ L+ I+EG ++ 
Sbjct: 116 RTISNGGVYIHPS-----------LVSEIENLDTDECKK-ELTDREMQILSLIAEGYSNK 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV N++ +I RK   K R+ A  Y ++NN
Sbjct: 164 EIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIYLLKNN 203


>gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti]
          Length = 243

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 77/238 (32%), Gaps = 20/238 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPF 84
              + + ++       +   R+  +T   G +  +            Q+   ++  DWP 
Sbjct: 6   RTLEFIDQLQHAATAAAVCERLLGITADFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPG 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYC 131
           + +          +  V+    +L  P                           + +   
Sbjct: 66  EWLERYVARNYVDHDPVVSHMKQLQAPFQWREASQSIRIDKSSGEVMGDAGAFKLRDGLA 125

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTG 188
                +    + + L   +   +      ++ L++ Y             K  +   LT 
Sbjct: 126 FPLVTLDGQIVMVSL-GGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMASKSIDHIVLTP 184

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 185 RERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida]
          Length = 238

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 14/227 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L R+  ++    W   +  LT  +G S+FL+       +     ++ SD+P       
Sbjct: 7   DELLRLSEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQQVLIYSDYPDAWRTRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARI 140
                     V+Q       P+                      G+              
Sbjct: 67  DAESYAAVDPVVQHCLNANRPLLWDRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRGE 126

Query: 141 RIGLML----LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              L L      P+    + + L    LL  Y         +       LT RE E L W
Sbjct: 127 AGMLCLKPSESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQW 186

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + GKT+ EI++IL  + + ++ +  +I RK    +R  A+  A++ 
Sbjct: 187 SAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233


>gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 78/260 (30%), Gaps = 41/260 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   Q++ IV+  + +     V  +    +    +                    G   
Sbjct: 1   MDKRQQELRIVIVDDHQLFREGVKRILEMEEDFKVVGEGAD---------------GGEA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            +L          +D  + +          A           +    +   +        
Sbjct: 46  TVLAEEHKPDVLLMDINMPNINGVS-----AAENVISVSPSTR---VIMLSIHDDEGYVY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y       + +   + ++   G  I      ++      +       +   
Sbjct: 98  RTLRAGASGYLLKEMGTSDLVDAVRVVASGGAYIHPKVTGKL----IEEFRRLSEQEGTA 153

Query: 181 GKDFE--------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            + F               LT RE E L  ++EGK++  I   L IS  TV N+++SI++
Sbjct: 154 ERSFSVDESQAIDPKVIESLTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSILQ 213

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R+ A+  +++N  V
Sbjct: 214 KLNVQDRTQAVVISIKNGWV 233


>gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 186

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 17/199 (8%)

Query: 49  MYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           M  + E V G      V         +D  +      +    +   +             
Sbjct: 1   MRVVGEAVSGDEVVKKVEECRPDCILMDINLPGKNGIEATS-LVKDQYPS-------CRV 52

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   ++      +       + Y        ++   + ++     +I      ++     
Sbjct: 53  LVLTMYEHDEYLMAALRAGADGYLLKDSSSDQVVAAIRMVLQGDSVIHPRMTKKLIT--- 109

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                +         + ELT RE E L  +++G ++ EIA  L IS  TV  +I  I RK
Sbjct: 110 -----YHQQTKSESNENELTEREKEILFELAKGLSNKEIAEALYISDKTVKIHINKIFRK 164

Query: 228 TATKTRSGAIAYAVRNNIV 246
              K+RS A+ YAVRN +V
Sbjct: 165 LNVKSRSQAVIYAVRNQLV 183


>gi|315654640|ref|ZP_07907546.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|315491104|gb|EFU80723.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 254

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 28/246 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  +          +   +D +  +       +    + A +            
Sbjct: 30  EAIKVLLVDDQSLIRMGFRMVLEAADDITVVGEAADGKTALQMVKATS------------ 77

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +    +     +           L    F            
Sbjct: 78  ---PDVVLMDVRMPHMNGIEATSEIITGNPN--------VKVLILTTFDLDEYAFAALRA 126

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKD- 183
             + +         +   +  +      I        + + A          +     D 
Sbjct: 127 GASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMFAPQLPGEQDEAEETNLVDK 186

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E LT I++G T+ EIA  L IS  TV  ++ +I+ K   + R  A+ +A
Sbjct: 187 ALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFA 246

Query: 241 VRNNIV 246
             N +V
Sbjct: 247 YENGLV 252


>gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
 gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624]
          Length = 238

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 18/235 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSAFLVVKNEDELFEVVKSTASKLGFDYCAYGMQSPLSIAEPKTIMLNNYPQAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                   K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYIEQRYVKVDPTVQHCMVSLQPLVWSSQNAKTQEEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREV 191
             R  L L     + +             +      S       D E       LT RE 
Sbjct: 125 GTRGMLTLARSTDQ-LSEKEQKAQYTNMYWLTQTLHSSIAKIVNDVEFSQFNLYLTNREK 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKTS EIA I+G++  TVN ++ + M+K     +  A   AV   ++
Sbjct: 184 EALRWTAEGKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGLL 238


>gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
 gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           multivorans CGD1]
          Length = 239

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D        +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYDEFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALSTNMIVWPDVDKIEPCPLWRDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 237

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWPFDLVR 88
            DL  R+          + + ALT       F +      F ++    I  S+ P + + 
Sbjct: 5   EDLFQRLKTATTEHELAVSLQALTSEFDFRFFSIFDIPATFSDRLSKHIRLSNLPSEYIE 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------------AGMDNRYCSLT 134
                      +V     +   P+   L   +                   M        
Sbjct: 65  EYDSLNLLSNSSVFAMLRQSTAPMTRFLDLAVKERPTEEQQVMRAVFEKHNMTMGVYFPV 124

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVEC 193
                 R  +   +     +       +GL   +  + +       G K   +T RE+E 
Sbjct: 125 HGSNGRRAAMAF-YGTRPALSFAETGVLGLCVLHAFDAYSKMTNKTGTKANGITTRELEV 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EIA IL +S +TVN Y+ S MRK     R+  +A A+R +++
Sbjct: 184 LHWAANGKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHLI 236


>gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei DM98]
 gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 14]
 gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 91]
 gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 9]
 gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei B7210]
 gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 112]
 gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei BCC215]
 gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
 gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei]
 gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei]
 gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei]
 gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia
           mallei ATCC 23344]
 gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b]
 gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei SAVP1]
 gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10229]
 gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 668]
 gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106a]
 gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei NCTC 10247]
 gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 305]
 gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei FMH]
 gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei JHU]
 gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei 2002721280]
 gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 406e]
 gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei ATCC 10399]
 gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei S13]
 gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1655]
 gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 576]
 gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei MSHR346]
 gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei GB8 horse 4]
 gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1106b]
 gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           mallei PRL-20]
 gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A T+ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFQQIAAYTKRLGFEYCCYGIRVPLPISKPVVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   +     G+       +   +
Sbjct: 63  MERYQEMNYLEVDPTVREGALSSNMIVWPEASASDATTLWSDARDHGLAVGVAQ-SSWAS 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTGREV 191
           R   GL+ +      +    +  + L A + ANM  S                 LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 243

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 76/238 (31%), Gaps = 20/238 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPF 84
              + + ++       +   ++  +T   G +  +            Q+   ++  DWP 
Sbjct: 6   RTLEYIDQLQHAGTAAAVCEKLLGITSDFGLTALMAGTVPQPGTPAGQQKQHVLLCDWPV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYC 131
           + +          +  V+    +L  P                           + +   
Sbjct: 66  EWLERYVARNYVDHDPVVSHMKQLQAPFQWREAAQDIRIDKSSGEVMGDAGAFKLRDGLA 125

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDFELTG 188
                +    + + L   +   +       + L++ Y            G      ELT 
Sbjct: 126 FPLITLDGQIVMVSL-GGEAVELSAAEFGLVSLVSTYAVGRAMQLHTMSGNTIDHVELTP 184

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL W + GK+  EI+ ILGIS +T   ++ +   K     R  A+A A+R   +
Sbjct: 185 RERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYI 242


>gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans]
          Length = 239

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D        +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYDEFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-------PPAGMDNRYCSLTFDVAR 139
           +         +  + ++        +     + I              +   + +   AR
Sbjct: 63  MTHYQAQNYIEIDSTVRDGALSTNMIVWPDVDKIEPCPLWRDARDFGPSVGVAQSSWAAR 122

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVE 192
              GL+ +      +    +  + L       L+    + F    +       LT RE E
Sbjct: 123 GAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFVVPKLSPEARVALTARERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 183 VLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila]
          Length = 260

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 78/231 (33%), Gaps = 20/231 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L  +  +         +   T  +G  ++          Q+  + V   +P   V+  
Sbjct: 8   EYLEHLTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPRAEVFMQYPDPWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT--------------PPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHG 127

Query: 137 VARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVH----WGKDFELTGRE 190
            A     L  +  +     +L +    +  ++ Y                     LT RE
Sbjct: 128 AAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREHDPHEALTDRE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            ECL W SEGKTS EIA ILGI+  TVN ++  + RKT +  R  AIA  V
Sbjct: 188 TECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238


>gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 225

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 73/232 (31%), Gaps = 17/232 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +       + + R++  D                G     +V         +D  +
Sbjct: 4   RIAIIDDHQLFREGIKRILEFDGDFEVVAE-----GSDGREALSIVEEHRPDLVLMDINM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +  +  D           +   +       +         Y     D  
Sbjct: 59  PDTNGVEATKQLIETYPD--------TKVVVLSIHDDENYVMRALQTGATGYLLKEMDAD 110

Query: 139 RIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   + ++   G  +      + + E   L     +              LT RE E L
Sbjct: 111 TLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTETNSNVMVQQEVRRPLHLLTRRECEVL 170

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++GK++  I   L IS  TV N+++SI++K     R+ A+  A++N  V
Sbjct: 171 QLLADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNGWV 222


>gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 224

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 27/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  + +     V  +    D    +   D                      L   +
Sbjct: 2   TKIIIVDDHQLFREGVKRILDFEDTFEVVAEGDDGTDIVN---------------LYEQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +          V      +   +               
Sbjct: 47  EPDVVLMDINMPGKNGVEATADLLA--------VYPDAKVMVLSIHDDESYVTHALKSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKDF 184
             Y     D   I   + ++   G  +       +       +      +       + F
Sbjct: 99  LGYMLKEMDADEIVEAIKVVSNGGSYLHPKVTKNLVAEFRRLSEHENKGNFHQTEIRRPF 158

Query: 185 EL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L T RE E L  +++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N
Sbjct: 159 HLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKN 218

Query: 244 NIV 246
             V
Sbjct: 219 GWV 221


>gi|298346055|ref|YP_003718742.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315657448|ref|ZP_07910330.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236116|gb|ADI67248.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315491920|gb|EFU81529.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 248

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 28/246 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  +          +   +D +  +       +    + A +            
Sbjct: 24  EAIKVLLVDDQSLIRMGFRMVLEAADDITVVGEAADGKTALQMVKATS------------ 71

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +    +     +           L    F            
Sbjct: 72  ---PDVVLMDVRMPHMNGIEATSEIITGNPN--------VKVLILTTFDLDEYAFAALRA 120

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKD- 183
             + +         +   +  +      I        + + A          +     D 
Sbjct: 121 GASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMFAPQLPGEQDEVEEANLVDK 180

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E LT I++G T+ EIA  L IS  TV  ++ +I+ K   + R  A+ +A
Sbjct: 181 ALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFA 240

Query: 241 VRNNIV 246
             N +V
Sbjct: 241 YENGLV 246


>gi|134299954|ref|YP_001113450.1| two component LuxR family transcriptional regulator
           [Desulfotomaculum reducens MI-1]
 gi|134052654|gb|ABO50625.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum reducens MI-1]
          Length = 218

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 70/222 (31%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D +     L   +S    +  + E   G         +      +D  +      
Sbjct: 7   LLIADDHILIREGLRKILSIEPHISVVGEVTNGQQAVDYCLKNPVDIVLMDINMPIMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +     +           +   +               + Y        ++   +
Sbjct: 67  EACRQIKKLNPNIG--------IIALTIHDQDEYLFELIKYGISGYVLKDIHPDQLIKTI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +      I       +      +     S D    K   LT RE+E L  +++G+++ 
Sbjct: 119 LGVAQGESFIPPSLTARV----LAEFTRLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV N++ +I +K     R+ A  YA++  +V
Sbjct: 175 AIANALYISEKTVKNHLTNIFQKIGVADRTQAALYAIKEKLV 216


>gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 186

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 17/199 (8%)

Query: 49  MYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           M  + E V G      V         +D  +      +    +     +           
Sbjct: 1   MRVVGEAVSGDEVVKKVEECRPDCILMDINLPGKNGIEATSLVKGQYPN--------CRV 52

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   ++      +       + Y        ++   + ++     +I      ++     
Sbjct: 53  LVLTMYEHDEYLMAALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLIT--- 109

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                +         + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I RK
Sbjct: 110 -----YHQQTKSESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRK 164

Query: 228 TATKTRSGAIAYAVRNNIV 246
              K+RS A+ YAVRN +V
Sbjct: 165 LNVKSRSQAVIYAVRNQLV 183


>gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 238

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 83/234 (35%), Gaps = 16/234 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSASLMVKNEYQLFEVVKSTALKLGFDYCAYGMQAPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +       +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYVKQQYVVVDPTVQHCMLSLQPLVWSSQSANTQSQKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGK---DFELTGREVE 192
             R  L L     ++  +++  +   +  L+    +              +  LT RE E
Sbjct: 125 GTRGMLTLARSTDQLSEKEQKAQYTNMYWLSQTVHSSIAKIVNDAEFAQFNLYLTNREKE 184

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W +EGKTS EIA ILG++  TVN ++ + M+K     +  A   AV   I+
Sbjct: 185 VLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGIL 238


>gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           pseudomallei 7894]
          Length = 239

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A T+ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFQQIAAYTKRLGFEYCCYGIRVPLPISKPVVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   +     G+       +   +
Sbjct: 63  MERYEEMNYLEVDPTVREGALSSNMIVWPEASASDATTLWSDARDHGLAVGVAQ-SSWAS 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTGREV 191
           R   GL+ +      +    +  + L A + ANM  S                 LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia]
          Length = 239

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    + + +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFNTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQARNYIEIDSTVRDGALSTNMIVWPDVDRIDPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 186

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 17/199 (8%)

Query: 49  MYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           M  + E V G      V         +D  +      +    +     +           
Sbjct: 1   MRVVGEAVSGDEVVKKVEECKPDCILMDINLPGKNGIEATTLVKNQYPN--------CRV 52

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L   ++      ++      + Y        ++   + ++     +I      ++     
Sbjct: 53  LVLTMYEHDEYLMSALRAGADGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLIT--- 109

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                +         + ELT RE E L  + +G ++ EIA  L IS  TV  +I  I RK
Sbjct: 110 -----YHQQTKLESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRK 164

Query: 228 TATKTRSGAIAYAVRNNIV 246
              K+RS A+ YAVRN +V
Sbjct: 165 LNVKSRSQAVIYAVRNQLV 183


>gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 16/225 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       +   + +      + E   GA    LV         +D  + +    +  R
Sbjct: 9   DDHQLFREGVKRILDFERSFDVVAEGDDGAEAISLVEEYNPDVVIMDINMPNVNGVEATR 68

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +     D           +   +               + Y     D   +   + ++ 
Sbjct: 69  QLIEKHPD--------SKVIILSIHDDENYVTHALKTGASGYLLKEMDADALVEAVKVVA 120

Query: 149 PKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             G  +              +  + A  +  + S          LT RE E L  +++GK
Sbjct: 121 DGGSYLHPKVTHNLVNEYRRLSAVGAGSSGGYSSQIEIRRPLHLLTRRECEVLQLLADGK 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  I   L IS  TV N++++I++K     R+ A+  A++N  V
Sbjct: 181 SNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWV 225


>gi|304390186|ref|ZP_07372140.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326668|gb|EFL93912.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 248

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 28/246 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  +          +   +D +  +       +    + A +            
Sbjct: 24  EAIKVLLVDDQSLIRMGFRMVLEAADDITVVGEAADGKTALQMVKATS------------ 71

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +    +     +           L    F            
Sbjct: 72  ---PDVVLMDVRMPHMNGIEATSEIITGNPN--------VKVLILTTFDLDEYAFAALRA 120

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKD- 183
             + +         +   +  +      I        + + A          +     D 
Sbjct: 121 GASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMFAPQLPGEQDEAEEANLVDK 180

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E LT I++G T+ EIA  L IS  TV  ++ +I+ K   + R  A+ +A
Sbjct: 181 ALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFA 240

Query: 241 VRNNIV 246
             N +V
Sbjct: 241 YENGLV 246


>gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 229

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 14/228 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +A +   D        +      +G  +        +   +    + +++P    +    
Sbjct: 1   MAGLEQADSEREIYGWIEHAARSLGYEYCAYGLRMPWPVSRPRIYMLNNYPEAWQKRYQE 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        ++       P+  +                 G+ + +    FD   +   L
Sbjct: 61  ARYVDIDPTVKHARRSQAPLVWSDACFAATPQLWCEAQAHGLRHGWTQSAFDSCGVSGML 120

Query: 145 MLLFPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            L    G I   +       +  +   A           +    +  LT REVE L W +
Sbjct: 121 TLARSNGPITPAELEQNEFKMRWLVSTAHLAMTGKLLPKLAPDTERGLTDREVEVLKWAA 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKTS EI+ IL IS +TVN ++ + + K     ++ A+  A    ++
Sbjct: 181 DGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRATMLGLL 228


>gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519]
 gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii]
          Length = 211

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 79/225 (35%), Gaps = 17/225 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       + L +++ ++                G      +  +      LD  + +
Sbjct: 1   MIVDDHALMREGLTKILEMEDNFEVV-----FKAADGYEALDYIEQNPVDIVLLDINMPN 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + ++ M   + +           +   V+ T    I       N Y     +   +
Sbjct: 56  MNGIETLKKMKQLDFE--------TKIIMLTVYDTREYLIETLNLGANGYMLKDAETDSL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  ++  G  I  +   E+      + N  +           LT RE E L  I+EG
Sbjct: 108 VKAIEAVYNGGSYIHPNLAGEL----FKEINRQRVSRNIKSGVDSLTRREYEVLLLIAEG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ +I+  L IS  TV N+++SI+RK   + R+ A  +A++  +
Sbjct: 164 MSNKDISDHLVISEKTVKNHVSSILRKLDLQDRTQAAIFAIKQKL 208


>gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 208

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  +++   G   + L +  +     +D  +     
Sbjct: 3   RLLVADDHALIRKGLVQLIEMENDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +   +             LF  +++     +         Y     +   +   
Sbjct: 63  IKAAKMLKEEKHP--------SKVLFLTIYNDREYLLEALKLGVEGYILKDAEYDDLIKA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++  G  I    + EI  +             H     +LT RE+E L  IS+G ++
Sbjct: 115 IRTIYNGGVYIHPSLMEEIDNI------------DHENLKKDLTPREIEILKLISKGYSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S  TV N++ +I +K   K R+ A  Y ++N
Sbjct: 163 KEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKN 202


>gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 239

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYHQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +            + ++        +          +        +G+       +   A
Sbjct: 63  MAHYQEQNYIDIDSTVRDGALSTNLIVWPDADKAGASPLWADARASGLAVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-------HWGKDFELTGREV 191
           R   GL+ +      +    +  + L   + AN+  S              +  LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSGFMVPKLAPEANVVLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 208

 Score =  141 bits (357), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 21/220 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  +++   G   + L +        +D  +     
Sbjct: 3   RLLVADDHALIRKGLVQLIELEKDIRVISQASNGEEAYRLAKELSPDIILMDINMPVMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +   +             LF  +++     +         Y     +   +   
Sbjct: 63  ITAAKKLKAEKHP--------SKILFLTIYNDKEYLVEALKLGVEGYILKDAEYDDLIKA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++  G  I    + EI                      ELT RE+E L  +S+G ++
Sbjct: 115 VRTIYNGGVYIHPSLMQEI------------EDSNEELLRKELTPREIEILKLLSQGYSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S  TV N++ +I RK   K R+ A  Y ++N
Sbjct: 163 KEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIYMLKN 202


>gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 20/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N     R           + L +++ L+  +             G     L+     + 
Sbjct: 1   MNDNKPIRILIADDHAMIREGLKQILELEGDIEIVGEA-----SDGYECLNLINKLNPEI 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  + +     ++  M   +             +   +   +   I       + Y 
Sbjct: 56  VLLDINMPNLDGIQVLNIMKQQQLTN--------KVIVLTIHKEIDYLIKVFDIGCDGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D A +R  +  +      +       +        +     D+  GK  +LT RE+
Sbjct: 108 LKDSDSATLRKAITAVHMGEGYVEPSLTPLL-------NSSLVERDIMTGKVNDLTKREL 160

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  I+ G  + EIAV L IS  TV N+I++I RK     R+ A  +A++N IV
Sbjct: 161 QVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQAAVFAIKNKIV 215


>gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 237

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                     +   A    +G  +            K   ++ S++P   V         
Sbjct: 13  ATAKSEADVFLEFTADVRALGFEYCSFGLRIPLPVSKPQFMLQSNYPQTWVDRYVSQNYF 72

Query: 97  KYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                ++       P+              +     G+ + +C  +         + ++ 
Sbjct: 73  AVDPTVRHGLSQMSPLIWRADSQTQSVEFWDEAEHHGLRHGWCMPSISRTGAIGLVTMVR 132

Query: 149 PKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I    L E       +  +A Y  +M            ELT RE E L W + GK
Sbjct: 133 SGEP-IDERELAEKGYQMSWLANMANYAMSMHLLARFVPEYAVELTARERETLQWSAAGK 191

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI  I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 192 TYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236


>gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 246

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 20/229 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF----QEQKLDSIVSSDWPFDLVRCMA 91
           +  +  T      +       G  +F ++          +      V S WP +L+    
Sbjct: 17  ISKIRTTFDAIQVLRKTCLSYGFRYFSVLTIPAMVSESAQVMSHISVISSWPPELIADYD 76

Query: 92  LSEKDKYYNVLQRPTELFCPVF------HTLPENITPP--------AGMDNRYCSLTFDV 137
             E  K   VL+R  +   P+        +  +              G+         D 
Sbjct: 77  RLELGKNSPVLERLRKQITPLLFEVENIDSERDGAEQASAKELFTRFGVTMGVYFPVQDG 136

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTW 196
              R  +  +  +   +    L  + + A    +       +       L  RE E L W
Sbjct: 137 RGQRFAVCFMGARKP-LSATELPSLAMFATLLVDQLSQITANEDTAKLVLNARETEVLQW 195

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +EGKTS EIA I G+S +TVN+Y     +K     R+ A+  A+R  +
Sbjct: 196 TAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIRLGL 244


>gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter
           xylosoxidans A8]
          Length = 237

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLL          +   ++ A+ + +G S+                ++ SD+P     
Sbjct: 5   AQDLLLTTNSATSEQAVFTKVAAVAQELGFSYCAYGLRAALPFTNPQFVMISDYPIAWQE 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
             A +   +    ++  +    P+  +           +     G+   +     D    
Sbjct: 65  RYAQARYLEIDPTVKHCSRSSIPIVWSDRVFAETPELWDEAQAVGLCVGWSQSNLDAYGT 124

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L   K ++   +      R+  +   A    +           +  LT RE E L
Sbjct: 125 GGMLTLARQKEQLSDAELLSKELRMRWLVTAAHLAFSKVLLPRFKLAPNVPLTRRETEIL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS +++ IL I+ +TV  +  + + K   + R+ A+A A    ++
Sbjct: 185 KWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAALLGLL 236


>gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  141 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 79/225 (35%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                    +T         +    F      +    +  + +  ++P D V+    +  
Sbjct: 17  FARTMDMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANY 76

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+  +           +    + + +     +F+       L L 
Sbjct: 77  AVIDPTVKHSKVSSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136

Query: 148 FPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I L++              A  + +  +S    +  D E +GRE + L W ++GK
Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTDVEFSGRECDVLRWTADGK 196

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 240

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R D+L +      +      +   TE +    + L         +    + + +P   + 
Sbjct: 10  RRDVLQKFQLASSSEEIYSILQQQTEMLEYDWYALCVRHPVPFTRPKIALQTTYPRAWIA 69

Query: 89  CMALSEKDKYYNVLQRP--TELFCPVFHTLP------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+       + P    L        +     G+            R 
Sbjct: 70  QYQAENYFTIDPVLKPENYRHGYLPWTDRLFQDAQEFWDAARDHGLRKGVTQCLILPNRA 129

Query: 141 RIGLMLLFPK---GRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLT 195
              L +         +   +    + +LA +        D       + + + RE+E L 
Sbjct: 130 LGFLSVSREGIQKDPLAEDETQMRLQMLAEFSTTALLRLDDSAILTPEMKFSKRELEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EI++IL IS NTVN +  ++ +K     ++    YAV   ++
Sbjct: 190 WTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACYAVATGLI 240


>gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  141 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 19/232 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             +       + + R++  + T           E +G     LV         +D  + +
Sbjct: 6   VIIDDHQLFREGVKRILDFEKTFEVVAEGDDGNEALG-----LVEEYDPDVVIMDINMPT 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  + +     D           +   +               + Y     D   +
Sbjct: 61  INGVEATKQLVEKYPD--------AKVIILSIHDDENYVTHALKTGASGYLLKEMDADAL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV------HWGKDFELTGREVECL 194
              + ++   G  +       +       A+                    LT RE E L
Sbjct: 113 VEAVKVVADGGSYLHPKVTHNLVKEYRRLASDENGSSEGYTQVEIRRPLHLLTRRECEVL 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N  V
Sbjct: 173 QLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWV 224


>gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 208

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  +++   G   + L +  +     +D  +     
Sbjct: 3   RLLVADDHALIRKGLVQLIEMENDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +   +             LF  +++     +         Y     +   +   
Sbjct: 63  IKAAKMLKEEKHP--------SKVLFLTIYNDREYLLEALKLGVEGYILKDAEYDDLIKA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++  G  I    + EI  +             H     +LT RE+E L  IS+G ++
Sbjct: 115 IRTIYNGGVYIHPSLMEEIDNI------------DHENLKKDLTPREIEILKLISKGYSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S  TV N++ +I +K   K R+ A  Y ++N
Sbjct: 163 KEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKN 202


>gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
 gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALNTNMIVWPDVDRIDPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 184

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 16/179 (8%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +     +           L   ++      +       
Sbjct: 19  RPDCILMDINLPGKNGIEATSLVKGQYPN--------CRVLVLTMYEHDEYLMAALRAGA 70

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   + ++     +I      ++          +         + ELT
Sbjct: 71  DGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLIT--------YHQQTKSESNENELT 122

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G ++ EIA  L IS  TV  ++  I RK   K+RS A+ YAVRN +V
Sbjct: 123 EREKEILFELVKGLSNKEIAEALYISDKTVKIHVNKIFRKLNVKSRSQAVIYAVRNQLV 181


>gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum]
          Length = 261

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 24/243 (9%)

Query: 28  TRSDLLARM---IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS----S 80
              DL + +   I      +    +       G             E++L   +      
Sbjct: 19  RGPDLFSFIECAIQTRSIAALFDLLVNFASNEGFDKVAYGALSCSNERRLPEYLPPPPTI 78

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMD 127
           ++P D  +  A  E      V++R   L  P                         AG+ 
Sbjct: 79  NFPSDWCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLK 138

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
           +      F        +    P      +DR+  +  LA+   N          +  E  
Sbjct: 139 HGMSVPLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETD 198

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W++EGK++  I  ++ ++ NTVN ++ +++RK     R+ A+A A R 
Sbjct: 199 IPLTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRR 258

Query: 244 NIV 246
            I+
Sbjct: 259 GII 261


>gi|260892920|ref|YP_003239017.1| two component transcriptional regulator, LuxR family [Ammonifex
           degensii KC4]
 gi|260865061|gb|ACX52167.1| two component transcriptional regulator, LuxR family [Ammonifex
           degensii KC4]
          Length = 213

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 31/240 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  +       +  L    + L  +                    G     LV
Sbjct: 1   MERIKVLVVDDHALVREGIKKLLMEDERLEVVGEAGN---------------GREAVELV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +      +  R +                 +   V       +    
Sbjct: 46  KKRPVDVVLLDISMPDMGGVEACREIKRLR--------PSVAVVALTVHDQEEYCLAMLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y        ++   ++        +      ++        +  +S         
Sbjct: 98  AGAAGYVLKESSADQLIEAIVRAARGEEYLSPRLAGKM----VKWFSRAESKRGL----C 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G ++ EIA  L +S  TV N++ SI +K     R+ A  +AV++ 
Sbjct: 150 GLTPREKEILRLLASGLSNREIARRLYLSEKTVKNHLTSIFQKIGVSDRTQAALWAVKHG 209


>gi|306817801|ref|ZP_07451542.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|304649450|gb|EFM46734.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 233

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 71/255 (27%), Gaps = 32/255 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E +++ ++L  +          +    D +  +       +    + AL        
Sbjct: 1   MSEETEKIKVLLVDDQALIRMGFRMVLEACDDIEVVGEAADGKTALGMVRAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  + +    +    +                 L    F       
Sbjct: 53  -------QPNVVLMDVRMPNMNGIEATGEIVSEN--------PEVKVLILTTFDLDEYAF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANM------- 172
                  + +         +   +  +      I        + + A    +        
Sbjct: 98  GALRAGASGFLLKDAKPEELVAAIRAVAAGDATISPRITKKMLDMFAPQLPDENAEADAA 157

Query: 173 -FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE E L  I+ G T+ E+A  L IS  TV  ++ +I+ K   +
Sbjct: 158 GAGATSADAVALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGAR 217

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ +A  N +V
Sbjct: 218 DRVQAVIFAYENGLV 232


>gi|227876856|ref|ZP_03994965.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977833|ref|ZP_06184790.1| response regulator protein VraR [Mobiluncus mulieris 28-1]
 gi|227842753|gb|EEJ52953.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269934003|gb|EEZ90580.1| response regulator protein VraR [Mobiluncus mulieris 28-1]
          Length = 233

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 71/255 (27%), Gaps = 32/255 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E +++ ++L  +          +    D +  +       +    + AL        
Sbjct: 1   MSEETEKIKVLLVDDQALIRMGFRMVLEACDDIEVVGEAADGKTALGMVRAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  + +    +    +                 L    F       
Sbjct: 53  -------QPNVVLMDVRMPNMNGIEATGEIVSEN--------PEVKVLILTTFDLDEYAF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANM------- 172
                  + +         +   +  +      I        + + A    +        
Sbjct: 98  GALRAGASGFLLKDAKPEELVAAIRAVAAGDATISPRITKKMLDMFAPQLPDENAGADAA 157

Query: 173 -FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE E L  I+ G T+ E+A  L IS  TV  ++ +I+ K   +
Sbjct: 158 GAGATSADAVALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGAR 217

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ +A  N +V
Sbjct: 218 DRVQAVIFAYENGLV 232


>gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 250

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 71/234 (30%), Gaps = 11/234 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
              D  R      +    D    +  L   +     +  +     G     L        
Sbjct: 23  ADADPTRDVMPIRVLVVDDHELFLQGLQTVLETEEDISVVGRAADGQEALTLASGTTPDI 82

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           +           + R   +   V     +           Y 
Sbjct: 83  VLMDVRMPGRDGIAAAGAIKR--------AVPRTRIVMLTVSDEESDLFEAIKAGAVGYL 134

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +  +     +I      ++ +  A  A   +           LT RE+
Sbjct: 135 LKSIPPHEVADAVRAVHNGQSLISPSMASKLMVEFATMARGGEDRPRAHAP--HLTAREL 192

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 193 EVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 246


>gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
 gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli
           BSR3]
          Length = 240

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +            ++ A ++ +G  +            +    +   +P   
Sbjct: 4   LRWQDAYHQFNAAANEQQLFQQISAYSKRLGFEYCCYGIRVPQPGTQPVVEIFDTYPAGW 63

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +    ++        +     +              GM       +   A
Sbjct: 64  MAHYQARNYIEVDPTVRDGAMSPNMIIWPDVDTAEDPSLWRDARDFGMSVGVAQ-SAWAA 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTGREV 191
           R   GL+ +  +   +    +  + L A + AN+  S                 LT RE 
Sbjct: 123 RGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGKFLVPKLSPAASVTLTKRER 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   ++
Sbjct: 183 EVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGLI 237


>gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 239

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 68/245 (27%), Gaps = 30/245 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N   + + ++L  +          L      L  +           +  +LT        
Sbjct: 20  NEAARPITLLLVDDHPVVRKGTRELLEGETDLRVVGEAGSGEEALAQARSLT-------- 71

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       +D  +      +  + +   +             L    +        
Sbjct: 72  -------PDVILMDVSMPGMNGIEATKAIKAEQ--------PSVGVLVLTSYDDDAYVFA 116

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y         +   +  +      +          +A      F        
Sbjct: 117 LLEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPS-------IARKVLERFSVASTPTP 169

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + +L+ RE+E L   + G+T+ EIA  L IS  TV  ++A+I  K    +R+ A+ + +
Sbjct: 170 PEDDLSPRELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGI 229

Query: 242 RNNIV 246
           +   +
Sbjct: 230 KRGWI 234


>gi|329948078|ref|ZP_08294979.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523217|gb|EGF50318.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 244

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 24/241 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++VL  +          +    + +  +       +   +  AL              
Sbjct: 26  PISVVLADDQALMRMGFRMVLEAEEDINVVGEASDGTAALAQAKAL-------------- 71

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +A           +         F             
Sbjct: 72  -HPDVILMDVRMPGMNGIEATELIARE-----CPGTRVL---ILTTFDLDEYAFAGLRAG 122

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
            + +         +   +  +     ++        + + A    N          +   
Sbjct: 123 ASGFLLKDTRPTELAEAIRTVASGEAVVSPRVTQRMLEMFAPSLPNSGAPTQASDPRIDS 182

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    +
Sbjct: 183 LTPREKEILVLMSQGLSNAEIADHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGL 242

Query: 246 V 246
           +
Sbjct: 243 M 243


>gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
 gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           R309803]
          Length = 215

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 241

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 18/231 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPFDLVR 88
            +AR+            +  +   +G SH L     +     EQ++ ++V   WP     
Sbjct: 12  FIARVDKASTPAEIADAVVDVARPLGFSHVLAGIIPIPGMTAEQQISNVVLHRWPKAWSE 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTF 135
                        +QR      P   +  E                    +   +     
Sbjct: 72  RYFTKGYLFDDPTIQRVNTSTEPFLWSELEPTYRNTPAPTRVMGEAREFNLGCGFTVPMI 131

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +     G  L   +  +       ++ L+A Y                 LT RE++ L 
Sbjct: 132 TLNGQTAGFSLASERAEVPS-ILRGQLQLIAMYAFARALGQKYKPAP-VNLTPREMDILQ 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W++EGK+  EI+VIL +S + V+     +  K     R+  +A A+R+N++
Sbjct: 190 WMAEGKSDWEISVILKVSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLI 240


>gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 232

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 86/253 (33%), Gaps = 31/253 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN E +++ IVL  + +     V           R++ ++ +              G + 
Sbjct: 1   MNIE-KKLRIVLIDDHQLFREGVK----------RILAMEPSFEIVAE-----GSDGDAS 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV+        +D  + +    +  + +          +      L   +        
Sbjct: 45  MELVQMYEPDVVLMDINMPNVNGVEATKQLVE--------MFPGVKVLILSIHDDETYVT 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y     D   +   + ++   G  I       +       AN  +      
Sbjct: 97  HVLKTGASGYLLKEMDTEALIEAVKVVGEGGAYIHPKVTHNLINEYRKLANEDRLEPEVG 156

Query: 181 GKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            ++ E       LT RE E L  +++GK++  I   L IS  TV N++++I++K     R
Sbjct: 157 FREVEFRRPLHLLTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGMNDR 216

Query: 234 SGAIAYAVRNNIV 246
           + A+  A++N  V
Sbjct: 217 TQAVVDAIKNGWV 229


>gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           vietnamiensis]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYHQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALNTNMIVWPDVDRIDPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|304406459|ref|ZP_07388115.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344517|gb|EFM10355.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 220

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 9/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +S    +  + E   G                +D  +      
Sbjct: 5   LLLADDHAMVRKGLQMFLSMQSDLQVIGEASNGQETIERAAELAPDMILMDLNMPVLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ + +  S              +    F      +         Y     +   +   +
Sbjct: 65  EVTKRLKQSH--------PHVKVIVLTSFSDEAHVLPAIRAGAKGYLLKDIEPDELVRAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++     +  D    +  + A   +     D    +  ELT RE E L  I+ G ++ 
Sbjct: 117 RRVWQGQVELHPDAASRLMNILAEPESNRDDPDEAAKRLSELTKREHEVLRLIATGMSNK 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   L I+  TV  +++ ++ K     R+ A  +AV+  I
Sbjct: 177 EIGDSLSITEKTVKTHVSHVLEKLGFADRTQAAIFAVKQGI 217


>gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
 gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
          Length = 245

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 28/246 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  +NI++  +     S +     ++     +                    G+    L 
Sbjct: 1   MSPINILIVDDHPLFRSGIRWSLEQNPQFVIVGEAAD---------------GSEALRLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      ++ R +   +         +   +   +     +      
Sbjct: 46  DELSPDVILVDLSLPGMNGLEVARALKRRQ--------PQAGVIILTMHQDDEQLFNAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC+   +  ++   +  +     +I    L     +A+   + F+          
Sbjct: 98  AGASAYCTKDIEPEQLIDVITRVARGEYLINEMVLSR-PFVASRVLDQFRELSRLDRTSS 156

Query: 185 ----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  ++ G ++ EIA  L IS  TV N+I SI+RK A   R+ A+ YA
Sbjct: 157 GFFSPLTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYA 216

Query: 241 VRNNIV 246
           +R+  +
Sbjct: 217 LRHGWI 222


>gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPSVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +                    G+       +   A
Sbjct: 63  MARYQAQNYIEIDSTVRDGALSTNMIVWPDVDRSDPGPLWQDAREFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A ++ +G  +            +    +   +P   
Sbjct: 3   LRWQDAYHQFNTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +    ++        +     +              GM       +   A
Sbjct: 63  MAHYQARNYIEIDPTVRDGAASPNMIIWPDADAAEQPSLWRDARDFGMSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREV 191
           R   GL+ +  +   +    +  + L A + AN        F    +       LT RE 
Sbjct: 122 RGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   ++
Sbjct: 182 EVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236


>gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
 gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL
           F6-596]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       + + R++ L+ +              G +    VR        +D  + +
Sbjct: 6   MIVDDHQLFREGIKRILELEDSFEVVAEAEN-----GKNIVAKVREYKPDIVLMDINMPT 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D    +                 +   +  T              Y     D   +
Sbjct: 61  VNGLDATEMLVRQ--------FPSIKVIILTIHDTDEYVTEALRSGAVGYLLKEMDAHEL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKDFELTGREVEC 193
              + ++   G  I      ++     + A+                     LT RE E 
Sbjct: 113 VEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNAAQGVYGYQQPEVKMPLHILTHRECEV 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  V
Sbjct: 173 LQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225


>gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
 gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARI 140
             +   +    +   T+   P+F                    AG+              
Sbjct: 65  DKAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGE 124

Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVEC 193
              L L        +    +   L  + +L  Y          +    K   LT RE E 
Sbjct: 125 LGALSLSVEAESRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVNKPVVLTSREKEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 185 LQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 253

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 24/243 (9%)

Query: 28  TRSDLLARM---IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS----S 80
              DL + +   I      +    +       G             E++L   +      
Sbjct: 11  RGPDLFSFIECAIQTRSIAALFDLLVNFASNEGFDKVAYGALSCSNERRLPEYLPPPPTI 70

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMD 127
           ++P D  +  A  E      V++R   L  P                         AG+ 
Sbjct: 71  NFPSDWCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLK 130

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
           +      F        +    P      +DR+  +  LA+   N          +  E  
Sbjct: 131 HGMSVPLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETD 190

Query: 186 --LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECL W++EGK++  I  ++ ++ NTVN ++ +++RK     R+ A+A A R 
Sbjct: 191 IPLTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRR 250

Query: 244 NIV 246
            I+
Sbjct: 251 GII 253


>gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli IE4771]
          Length = 240

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 18/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
                       M  LT+ +G + FL++     +  ++ +  + ++WP ++V        
Sbjct: 15  AGFKTHYEVFKYMKGLTQDLGMTAFLIMTLPTVEFVEIGATKIITNWPAEMVDYYDAHNL 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDVARIR 141
                V++R      P  + +                ++    GM+        D A  R
Sbjct: 75  MVDSPVIRRMLRSTSPFNYDVEAINTDRGGGKKSTVIDLFRRYGMEKGAYFPLHDAAGGR 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEG 200
             + +   +   +    + +I  +A    +           K    T  E++CL   + G
Sbjct: 135 GAMSISGSRNFSM--IEMAKILFIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + S EIA +L +S N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 193 RKSSEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1]
 gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 27/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            NIV+  + +     V  +         +   D                G+    LV   
Sbjct: 3   TNIVIIDDHQLFREGVKRILEFEPTFNVLAEGDD---------------GSEAMRLVEQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   +               
Sbjct: 48  NPDVVLMDINMPEKNGVEATQELVNKYPD--------TKVIILSIHDDENYVSHALKTGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKD 183
             Y     D   +   + ++   G  I       +       AN  ++            
Sbjct: 100 LGYLLKEMDSEALIEAVKVVAAGGSYIHPKVTHNLISDYRRLANTQETGGFKQTEVRRPL 159

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+   ++N
Sbjct: 160 HLLTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTGIKN 219

Query: 244 NIV 246
             V
Sbjct: 220 GWV 222


>gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
 gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3]
          Length = 215

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+       E   D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALV----KVGETNPDVVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +   K Y  ++    +    F      +       + Y     +  ++   + 
Sbjct: 61  MDGVEATACIKKEYPDVK---VIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D    +           +   +       LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIANTLLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 175 IASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia
           thailandensis]
          Length = 239

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A T+ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFQQIAAYTKRLGFEYCCYGIRVPLPISKPVVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   +     G+       +   +
Sbjct: 63  MERYQEMNYLEVDPTVRDGALSSNMIVWPEASANDATTLWSDARDHGLAVGVAQ-SSWAS 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTGREV 191
           R   GL+ +      +    +  + L A + ANM  S                 LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGLI 236


>gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei]
          Length = 239

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A T+ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFQQIAAYTKRLGFEYCCYGIRVPLPISKPVVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   +     G+       +   +
Sbjct: 63  MERYQEMNYLEVDPTVREGALSSNMIVWPEASASDATTLWSDARDHGLAVGVAQ-SSWAS 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTGREV 191
           R   GL+ +      +    +  + L A + ANM  S                 LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L W  EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 KVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236


>gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
 gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 4222]
          Length = 215

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLTLVGEANNGKEALVKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANTLLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 213

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 71/222 (31%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E   G      V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRSILEVESDMKVVGEASSGDEVLGKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           L   ++      +       + Y        ++   +
Sbjct: 64  EATGLVKKKYPN--------CRVLVFTMYEHDEYLMDALQSGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYQGDSVIHPRMTKKLIT-------YHQQKMKLESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 215

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETNPDVILMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATAYIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response
           regulator) [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 16/231 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +       + + R++  +                G+    +V         +D  +
Sbjct: 4   RIAIIDDHQLFREGIKRILEFEGDFEVVAE-----GSDGSEALSIVETYRPDLVLMDINM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +                 +   +       +         Y     D  
Sbjct: 59  PDINGVEATKQLIE--------AYPDTKVVVLSIHDDEHYVMRALQTGATGYLLKEMDAD 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLT 195
            +   + ++   G  +       +                          LT RE E L 
Sbjct: 111 TLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTEKGGAVVKQEVRRPLHLLTRRECEVLQ 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++GK++  I   L IS  TV N+++SI++K     R+ A+  A++N  V
Sbjct: 171 LLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNGWV 221


>gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST24]
 gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-Cer4]
 gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-15]
 gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH676]
 gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 215

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETNPDVILMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATAYIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEESSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 223

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 80/242 (33%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  +       ++ +    D +  +      V    +   L            
Sbjct: 1   MEKIKVLIADDHRVVREGLAAILKTKDDINVVGEAQDGVEAVEKTKTL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     +D  +      +  R +                 +   ++           
Sbjct: 49  ---MPDVILMDVSMPRMGGIEATRQIKRE--------FPHMGIVALTMYEEQQYIFDLVR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     + ++I   +  ++    +I      +I  LA +     K        + 
Sbjct: 98  AGATGYLLKDSESSQIVAAIRAIYRGESLIHPSVASKI--LAEFSLMSQKKGKKPAWVEH 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE+  L  +++GKT+ EIA  L +S  TV N++ +I  K     R+ A   A+R  
Sbjct: 156 DLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVYDRTQAAILAIRKG 215

Query: 245 IV 246
           ++
Sbjct: 216 LI 217


>gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638]
 gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638]
          Length = 240

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R +   R   +         +   T+ +   ++ L         +    + S +P + + 
Sbjct: 10  RRNCFLRFQEMGSADEVYEELQRQTQALEFDYYSLCVRHPVPFTRPKISIHSSYPAEWIS 69

Query: 89  CMALSEKDKYYNVLQR--PTELFCPVFHTLPENI------TPPAGMDNR----YCSLTFD 136
                       VL+R    +   P    L  +           G+              
Sbjct: 70  QYQSENYYAIDPVLKRENFLQGHLPWTDALFADAQALWDGARDHGLRKGITQCLMLPNHA 129

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLT 195
           +  + +     F K        L    L+      + +  +++    + + + RE E L 
Sbjct: 130 LGFLSVSRTSQFGKMMDSDEIELRLQVLVQMALTTLLRFEHEMVMPPEMKFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA     +
Sbjct: 190 WTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGFI 240


>gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 238

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 75/235 (31%), Gaps = 19/235 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D+L +             +  +   +G  +F        ++ +      S++P       
Sbjct: 4   DILDQTSSAKTERDIHDILSRIAARLGFDYFFYGTLSDMRKPENPVKTVSNYPMAWQEKY 63

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARI 140
             S   +   V++       P+                      G+              
Sbjct: 64  KSSGYIRIDPVVRHCGHRLIPLQWNDGICHCREQRNFMEDARGHGLVAGASFPVHSRHGE 123

Query: 141 RIGLMLLFPKG-------RIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREV 191
              L L                     +  L AA+     +             LT RE+
Sbjct: 124 VSILSLASRSAGGTTSLSAKHAPATFAQGALAAAFVREGMERISNRPDHEPSAPLTHREL 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL WI+ GK+S EIA+ILGIS N V  ++  +M K   ++R  A+  A+ + +V
Sbjct: 184 ECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMASGVV 238


>gi|297160873|gb|ADI10585.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + E   G     + R        +D  +     
Sbjct: 4   RVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGRQAVDVSRGTHPDVVLMDVRMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +     D    V  RP  L    F              + +       A +   
Sbjct: 64  LEAARRI----LDPPPGVTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A +             +   LT RE E L  I+ G ++
Sbjct: 120 VRIVAAGEALLAPSVTRRL--IADFARQRPAPRKNFAARRSGLTPRETEVLELIARGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 178 QEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 220


>gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 244

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 67/237 (28%), Gaps = 11/237 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
             E     S    +    D     +     +     +  + E   G S     R      
Sbjct: 15  GSEHPGEVSGPVSVVLADDQALMRMGFRMVLEAEEDITVVGEASDGTSALAQARALHPDV 74

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +    +A           +         F              + + 
Sbjct: 75  ILMDVRMPGMNGIEATERIAQE-----CPGTRVL---ILTTFDLDEYAFAGLRAGASGFL 126

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGR 189
                   +   +  +     ++       +  +  A+  ++          +   LT R
Sbjct: 127 LKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPSSDAPEQSSCDPRIESLTPR 186

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    ++
Sbjct: 187 EKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGLM 243


>gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 228

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 24/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  +    + LA             ++                  
Sbjct: 10  IRILLADDHALFRQGLKKILDMEEDLAVCGEAQNGEEVVDKVK---------------LL 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +          V      +   +               
Sbjct: 55  KPNIILMDINMPLLNGVEATKYVKE--------VSPETKVIALTIHEDEEYLFEIVKEGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-NMFKSYDVHWGKDFEL 186
             +     +   +   +  +      I      ++       A N  ++         EL
Sbjct: 107 AGFLLKDVETPTLVQAIQEVNKGNSFIHPTITHKLLGEFNRLAQNSPRNIKSDEAVQSEL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E L  +++G T+ EI+  L IS  TV N++++I+RK     R+ A+  A++  +V
Sbjct: 167 TGREKEILELMAQGYTNKEISKELYISEKTVKNHVSNILRKMDVTDRTQAVITALKCGVV 226


>gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
 gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
          Length = 216

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       +  +    + +  +                    G     + 
Sbjct: 1   MNKIRVMIADDHAMVRQGLKTILELEEDICVVSQASN---------------GEEAVAMS 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +        ++ +     +           +   +            
Sbjct: 46  KKIRPDIILMDINMPVINGLQAIKMLKQEPVNY--------KIIVLTLHQDREYLFKTLQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     + + +   +  ++     I  +   E+      + N    Y+       
Sbjct: 98  LGCEGYVLKDAESSVLIEAIRSVYHDQTYIQPNMTGEL----VKEFNRVTLYEQDKSIAN 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REVE L  I+EG  + EIA  L IS  TV N+I++I +K     R+ A  YA ++N
Sbjct: 154 NLTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKHN 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
 gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1271]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+       E   D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLALVGEANNGKEALV----KVGETNPDVVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +   K Y  ++    +    F      +       + Y     +  ++   + 
Sbjct: 61  MDGVEATTCIKKEYPNVK---VIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D    +           +   +       LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIANTLLSQTLPVEEKEEESSIQVD---VLTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 175 IASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus
           Ab9]
 gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter italicus Ab9]
 gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 205

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 21/218 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +     +  +++   G   + L +  +     +D  +       
Sbjct: 2   LVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYQLAKKFMPDLILMDVNMPVMNGIK 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             + +   +             LF  +++     +         Y     +   +   + 
Sbjct: 62  AAKMLKEEKHP--------SKVLFLTIYNDREYILEALKLGVEGYILKDAEYDDLIKAIR 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++  G  I    + EI  +             H     +LT RE+E L  IS+G ++ E
Sbjct: 114 TIYNGGVYIHPSLMEEIDNI------------DHENLKKDLTPREIEILKLISKGYSNKE 161

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  L +S  TV N++ +I +K   K R+ A  Y ++N
Sbjct: 162 IAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKN 199


>gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH621]
 gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST196]
 gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH603]
 gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S       + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDFELVGEANNGKEALVKVGETSPDVVLMDLYMPEMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPN--------VKVIVLTSFSDQAHVLPALKAGASGYILKDIEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D      LL+       K  +     D  LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIAN--ALLSQTLPQEEKEEEPSVQVDV-LTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHMSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
 gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102]
          Length = 213

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  +      +  +           ++ A                
Sbjct: 2   IKILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEA---------------C 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +  +  +           L   ++      +       
Sbjct: 47  RPDCILMDINLPGKNGIEATELVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   + +L+    +I      ++           +        + ELT
Sbjct: 99  DGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 152 EREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 239

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 73/234 (31%), Gaps = 11/234 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQE 71
              D  R +    +    D    +  L   +     +  +     G     L        
Sbjct: 12  AEADPIRQTSPIRVLVVDDHELFLQGLQTVLEIEDDIRVVGRAGNGQEAVSLAAGTTPDI 71

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           +           +     +   V     +           Y 
Sbjct: 72  VLMDVRMPLRDGIAATGGVKR--------AVPGVKIVMLTVSDEENDLFEAIKAGAVGYL 123

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +  +     +I      ++  +A + +    + D        LT RE+
Sbjct: 124 LKSIPPHEVADAVRSVHHGQSLISPSMASKL--MAEFASIARGTDDRPRLHTPHLTAREL 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 182 EVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235


>gi|227497785|ref|ZP_03927971.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832785|gb|EEH65168.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 246

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 10/236 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
            + D    S    +    D     +     +     +  + E   GAS     R      
Sbjct: 18  AQGDSAVPSRPVSVVLADDQALMRMGFRMVLDAEEGIEVVGEASDGASALAQARALHPDV 77

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +    +            +         F                + 
Sbjct: 78  ILMDVRMPGMNGIEATEAITQQ-----CPGTKIL---ILTTFDLDEYAFAGLRAGAAGFL 129

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                 A +   +  +     ++        + + A++             +   LT RE
Sbjct: 130 LKDTRPAELAEAIRTVASGEAVVSPRVTRRMLEMFASHLPQDGAQDAAEDPRIASLTPRE 189

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I++G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    ++
Sbjct: 190 REILVLIAQGMSNSEIADQLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETGLM 245


>gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis]
          Length = 241

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                    +T         +    F      +    +  + +  ++P D V+    +  
Sbjct: 17  FARTMDMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANY 76

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+  +           +    + + +     +F+       L L 
Sbjct: 77  AVIDPTVKHSKVSSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136

Query: 148 FPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I L++              A  + +  +S    +    E +GRE + L W ++GK
Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTGVEFSGRECDVLRWTADGK 196

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
 gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           10876]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETTPDVILMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATAYIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 213

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  +      +  +           ++                  
Sbjct: 2   IKILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDEVLGKVEECG-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +          +      L   ++      +       
Sbjct: 48  -PDCILMDINLPGKNGIEATELVKK--------IYPSCRVLVFTMYEHDEYLMDALQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   + +L+    +I      ++           +        + ELT
Sbjct: 99  DGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 152 EREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida]
          Length = 238

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 14/227 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L R+  ++    W   +  LT  +G S+FL+       +   + ++ SD+P       
Sbjct: 7   DELLRLNEMERFEDWLAHLKILTRKLGYSNFLIGLKPAPTDANQEVLIYSDYPDAWRTRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARI 140
                     V+Q        +                      G+              
Sbjct: 67  DAESYAAVDPVVQHCLNANRALLWDRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRGE 126

Query: 141 RIGLML----LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              L L      P+    + + L    LL  Y         +       LT RE E L W
Sbjct: 127 AGMLCLKPSESGPQATATMIESLPTATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQW 186

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + GKT+ EI++IL  + + ++ +  +I RK    +R  A+  A++ 
Sbjct: 187 SAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQ 233


>gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 214

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETNPDVILMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATAYIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    + L         +           LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANAL-LSQTLPVEEKEEEPSIVD---VLTARENEVLQLLAKGMSNK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 173 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 214


>gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    D        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYAGHLPSGEDSVPNTLGTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 EREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1]
 gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1]
 gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1]
          Length = 239

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A ++ +G  +            +    +   +P   
Sbjct: 3   LRWQDAYHQFNTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +    ++        +     +              GM       +   A
Sbjct: 63  MAHYQARNYIEIDPTVRDGAASPNMIIWPDADAAEQPSLWRDARDFGMSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREV 191
           R   GL+ +  +   +    +  + L A + AN        F    +       LT RE 
Sbjct: 122 RGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+  A+   ++
Sbjct: 182 EVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236


>gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 240

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 18/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
                       M  LT+ +G + FL++        ++ +  + ++WP ++V        
Sbjct: 15  AGFKTHYEVFKFMKGLTQDLGMTAFLIMTLPTVDFVEIGATKIITNWPAEMVDYYDAHNL 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDVARIR 141
                V++R      P  + +                ++    GM+        D A  R
Sbjct: 75  MVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGR 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEG 200
             + +   +   +L   + +I  +A    +           K    T  E++CL   + G
Sbjct: 135 GAMSISGSRNFTML--EMAKILFIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + S EIA +L +S N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 193 RKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 267

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       +  +    + +  +                    GA      
Sbjct: 48  VEPIRVLVVDDHALFRRGLEIVLEAEEDIEVIGEAGD---------------GAEAVEKA 92

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +    +          V      +   +     +      
Sbjct: 93  ADLLPDIVLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYEAIK 144

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      I      ++  L  +++ + ++ +       
Sbjct: 145 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAP 202

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  
Sbjct: 203 RLTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREK 262

Query: 245 IV 246
           I+
Sbjct: 263 IL 264


>gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU
 gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 29/254 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   +QVN     E++ +   +       + + R++ ++                G + 
Sbjct: 1   MN---EQVN-----ENKIQIVIIDDHQLFREGVKRILAMEPEFEVVADGE-----DGENA 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV         +D  +      +  R     +  + Y  ++        +        
Sbjct: 48  VELVEKYNPDVILMDINMPKVNGVEATR-----DLIQRYPDVKVL---VLSIHDDESYVT 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y     D   +   + ++   G  I       +        N  +      
Sbjct: 100 HVLKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESSEI 159

Query: 181 G--------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           G            LT RE E L  +++G ++  I   L IS  TV N++++I++K     
Sbjct: 160 GFKEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVND 219

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  +++N  V
Sbjct: 220 RTQAVVESIKNGWV 233


>gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 213

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRNILEDESDMKVVGEASSGDGVLGKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +  +           L   ++      +       + Y        ++   +
Sbjct: 64  EATDLVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKLESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
          Length = 213

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  +      +  +           ++                  
Sbjct: 2   IKILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDEVLGKVEECG-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +          +      L   ++      +       
Sbjct: 48  -PDCILMDINLPGKNGIEATELVKK--------IYPSCRVLVFTMYEHDEYLMDALQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   + +L+    +I      ++           +        + ELT
Sbjct: 99  DGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 152 EREKEILFELVKGLSNKEIAKVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134]
 gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDGVLGKVEECGPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKKYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR
 gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum]
          Length = 240

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 73/225 (32%), Gaps = 15/225 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             +         +  L   +G   FL         +  +++V+ ++P    +    S   
Sbjct: 12  QQITSHDDLENVLNGLNNLIGHEFFLFGLSFQPTLKTSETLVTDNYPNSWRQQYDESGFM 71

Query: 97  KYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGLML 146
               +++     F P+                      G+   +      +      +  
Sbjct: 72  HIDPIVKYSITNFLPIRWDDAKRVNNDGRVIFEEARCNGLKAGFSIPIHGLRGEFGMISF 131

Query: 147 LFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGK 201
                +   + +  +    L+    A+   +   +         LT REV+CL W +EGK
Sbjct: 132 ATSDTKSYDLNQQSIHTSQLIVPLLAHNIGNITRYHKDAKPRAVLTAREVQCLAWAAEGK 191

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA I+  S  TV  + ++  +K     R  AI  A+    +
Sbjct: 192 SAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAILGGYI 236


>gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4]
 gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4]
          Length = 243

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 18/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLVR 88
            L+++   D   +        T   G  + +L       +   Q++  I+ +DWP +   
Sbjct: 12  FLSQIKQTDTVKNLVDLTKHATSRYGVKNIVLGFPPEIGMLPSQQMQGILLADWPDEWSH 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTF 135
                        ++           +                +      + N +     
Sbjct: 72  LYFRDNLAFQDPAIRHIVSSEPSFVWSDFSKTLPISRDEKWLMDQAKEFFVSNGFTLPIL 131

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECL 194
            +   R G+                 + L+A+            +  +   LT RE E +
Sbjct: 132 SLDGRRAGVTFAGS-DIDDSPQARTGMALIASLVFARALELYGANQKQTTRLTPREREVI 190

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            WI+ GKT  EI+VI G+S   V  ++ +IM K    +RS AIA A R  ++
Sbjct: 191 GWIANGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVSRSHAIAEAFRQKLI 242


>gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m]
          Length = 260

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 20/238 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + + L     +         +   T  +G  ++          Q+   ++ +  P   V+
Sbjct: 6   QLEYLEHFTSVTDGDRLAELIGRFTLGMGYDYYRFALIIPMSMQRPKVVLFNQCPDSWVQ 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------------TPPAGMDNRYCSLT 134
               +       ++Q   +   P++    +                    G+ N      
Sbjct: 66  AYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPL 125

Query: 135 FDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTG 188
              A     L  +  +     +L +    +  ++ Y             ++ +    LT 
Sbjct: 126 HGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTD 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECL   SEGKTS +IA IL I+  TVN ++  + RKT +  R  AIA  V + I+
Sbjct: 186 RETECLFCASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSGIL 243


>gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
 gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme
           [Bacillus halodurans C-125]
          Length = 236

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 82/254 (32%), Gaps = 29/254 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   +QVN     E++ +   +       + + R++ ++                G + 
Sbjct: 1   MN---EQVN-----ENKIQIVIIDDHQLFREGVKRILAMEPEFEVVADGE-----DGENA 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV         +D  +      +  R     +  + Y  ++        +        
Sbjct: 48  VELVETYNPDVILMDINMPKVNGVEATR-----DLIQRYPDVKVL---VLSIHDDESYVT 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y     D   +   + ++   G  I       +        N  +      
Sbjct: 100 HVLKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESSEI 159

Query: 181 G--------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           G            LT RE E L  +++G ++  I   L IS  TV N++++I++K     
Sbjct: 160 GFKEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVND 219

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  +++N  V
Sbjct: 220 RTQAVVESIKNGWV 233


>gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +                    G+       +   A
Sbjct: 63  MAHYQARNYIEIDSTVREGALSTNMIVWPDVDRIDPCPLWEDARDFGLAVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT RE 
Sbjct: 122 RGAFGLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFMLPKLSPAAGVTLTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K A   +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGLI 236


>gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
          Length = 248

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 33/261 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +A                      GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMAVAAQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +  Q        +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRQISALQHRFAADGTQSEVTHTKVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +       + +     +   +   +  +F    II       +         M  +    
Sbjct: 108 MAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGRP 167

Query: 180 WGKDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                              ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+
Sbjct: 168 ENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHIL 227

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ +A  N++V
Sbjct: 228 SKINARDRVQAVVFAYENHLV 248


>gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 213

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 16/217 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++ +D        + ++ E       VG +          +E + D I+      +    
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDGVLGKVEECRPDCILMDINLPEKNGI 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A     K Y        L   ++      +       + Y        ++   + +L+ 
Sbjct: 64  EATELVKKKYPS---CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSDQVVAAIRMLYR 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I      ++           +        + ELT RE E L  + +G ++ EIA +
Sbjct: 121 GDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEV 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 174 LYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 213

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDGVLKKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +  +           L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 213

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRNILEDESDMKVVGEASSGDGVLGKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +  +           L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKLESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 213

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDGVLGKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +  +           L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVIAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKLESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia
           thailandensis MSMB43]
          Length = 239

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A T+ +G  +            +    +   +P   
Sbjct: 3   LRWQDAYLQFSAAENEQQLFQQIAAYTKRLGFEYCCYGIRVPLPISRPVVAIFDTYPNGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +         +    ++        +          T   +     G+       +   +
Sbjct: 63  MERYQEMNYLEVDPTVREGALSSNMIVWPEASACDATSLWSDARDHGLAVGVAQ-SSWAS 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       ++    + F    +       LT RE 
Sbjct: 122 RGVFGLLTIARHTDRLTIAEINHLTLQTNWLANMSHSLMSRFLVPKLAPESGVALTHRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  ILGIS  TVN ++ +++ K     +  A+  A+   +V
Sbjct: 182 EVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGLV 236


>gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 216

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  +      +  +           ++ A                
Sbjct: 5   IKILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEA---------------C 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +  +  +           L   ++      +       
Sbjct: 50  RPDCILMDINLPGKNGIEATELVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   + +L+    +I      ++           +        + ELT
Sbjct: 102 DGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 155 EREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 213


>gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus
           NVH0597-99]
 gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 213

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDGVLEKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +  +           L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC
           BAA-895]
 gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 71/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    V + +P   V 
Sbjct: 10  RRSMLVRFQEMATAEDVYTELQHQTQQLEYDYYALCVRHPVPFTRPKISVHTTYPQAWVA 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFSIDPVLKPENFRQGHLAWNDALFSEAQSLWDAARAHGLRRGATQCLMLPNRA 129

Query: 141 RI--GLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
                +     +      D +   + LL     +     +       +   + RE E L 
Sbjct: 130 LGFLSVSRASARHAPFAHDEIELRLQLLVRESLSALTRLEDEMVMTPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp.
           8437]
          Length = 216

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S    M  + +   GA   L++         +D  +      
Sbjct: 5   VLLVDDHAVLRDGLSNIISLEEDMEVVGQASSGAEALLMIEELQPDVVLMDINMPGMSGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +   +        Q+   L   +F                Y       + +   +
Sbjct: 65  EAIRRIRAKD--------QKVAVLVLTMFDRDEYLYESIRAGATGYLLKDAPSSDVIDAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +      ++        +  K  D    +D  LT RE++ L  + +G ++ 
Sbjct: 117 RSASRGESTLHPVMARKL----LDNISGGKKTDRGSNEDS-LTPRELDVLNLMVKGLSNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++++I++K   K+RS AI YA+++ +V
Sbjct: 172 EIAEQLFISDKTVKIHVSNILKKLRVKSRSQAIIYAIQHELV 213


>gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulolyticum H10]
          Length = 216

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +       +  +    + +  +                    G     L 
Sbjct: 1   MSKIRIMIADDHAMVRQGLKTILELEEDICVVSQASN---------------GEEAVALA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +        ++ +     +           +   +            
Sbjct: 46  RRVRPDIILMDINMPVINGLQAIKTLKEETVNY--------KIIVLTLHQDREYLFKTLQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     + + +   +  ++     I  +   E+           +   +      
Sbjct: 98  LGCEGYVLKDAESSVLIEAIRNVYRDQTYIQPNMTGELVKEFNRVTLYEQDKSIINN--- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REVE L  I+EG  + EIA  L IS  TV N+I++I +K     R+ A  YA ++N
Sbjct: 155 -LTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKHN 213

Query: 245 I 245
           I
Sbjct: 214 I 214


>gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia]
          Length = 239

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYQQFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALNTNMIVWPDVDRIDPCPLWQDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +       LT R+ 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPAAGVTLTARDR 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236


>gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia
           cepacia]
          Length = 239

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D        +       R+ A ++ +G  +            K    +   +P   
Sbjct: 3   LRWQDAYDEFSAAEDEQQLFQRIAAYSKRLGFEYCCYGIRVPLPVSKPAVAIFDTYPDGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +  + ++        +     + I            G+       +   A
Sbjct: 63  MAHYQAQNYIEIDSTVRDGALSTNMIVWPDVDKIEPCPLWRDARDFGLSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
           R   GL+ +      +    +  + L       L+    + F    +        T RE 
Sbjct: 122 RGAFGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVTQTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W +EGKT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 182 EVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236


>gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 16/231 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +       + + R++  +                G+    +V         +D  +
Sbjct: 4   RIAIIDDHQLFREGIKRILEFEGDFEVVAE-----GSDGSEALSIVETYRPDLVLMDINM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +                 +   +       +         Y     D  
Sbjct: 59  PDINGVEATKQLIE--------AYPDTKVVVLSIHDDENYVMRALQTGATGYLLKEMDAD 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLT 195
            +   + ++   G  +       +                          LT RE E L 
Sbjct: 111 TLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTEKGGAVVKQEVRRPLHLLTRRECEVLQ 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++GK++  I   L IS  TV N+++SI++K     R+ A+  A++N  V
Sbjct: 171 LLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNGWV 221


>gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 214

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++ +    D +  +                    G     L +  
Sbjct: 5   IKVLLVDDHEMVRIGLAAVLGTEDGIEVVGEASN---------------GEEGIRLTQEY 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 50  KPDVVLMDLVMEGMDGIETTRKLLQL--------YPECKVIVLTSFLDDEKMYPVLEAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +        I+           A    N F+          +LT
Sbjct: 102 FSYLLKTSRAQEIAQAIRAAVKGQPILESQV-------ATKIMNRFRQPKPESAPHEDLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ GK++ E+A  L I   TV  ++ ++++K   + R+ A  YA ++ IV
Sbjct: 155 EREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTNVLQKLGVEDRTQAAIYAFKHGIV 213


>gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 235

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 17/227 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D  + +        W   +  +   +G   +LL     F   +  + + + +P D ++C 
Sbjct: 3   DDFSCLAKFLDCRDWESHLRKVLCRLGYKTYLL-SIGGFTTNEPSNRIITTYPLDWLKCY 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARI 140
                     +++     F P+F           +            ++  S+      +
Sbjct: 62  EDENFILIDPIVKHCRRHFMPLFWGGARRRARGRSKEFWRARERHGLSQGVSIPLRCREM 121

Query: 141 RIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTGREVECL 194
                +  P         +     G+L      +     +       +   LT RE E L
Sbjct: 122 LGSFNVAHPVDSNEEFDDEVNVTFGVLFMLVPFLLEGSQRHLKAPGEQSCSLTMRETEVL 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            W   GKT+ EI+ ILG S  TVN +IA+  RK     R  A+  A+
Sbjct: 182 KWSGAGKTTWEISRILGCSERTVNFHIANASRKLGASNRLQAVGMAL 228


>gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
 gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1293]
          Length = 215

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALMKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     D           +    F      +       + Y     +  ++   +
Sbjct: 65  EATVCIKKEYPD--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct]
          Length = 240

 Score =  139 bits (350), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARI 140
             +   +    +   T+   P+F                    AG+              
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGE 124

Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVEC 193
              L L        +    +   L  + +L  Y               K   LT RE E 
Sbjct: 125 LGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 185 LQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 213

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDGVLGKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKKYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|307700594|ref|ZP_07637626.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614239|gb|EFN93476.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 233

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 70/255 (27%), Gaps = 32/255 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E +++ ++L  +          +    D +  +       +    + AL        
Sbjct: 1   MREETEKIKVLLVDDQALIRMGFRMVLEACDDIEVVGEAADGKTALGMVRAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  + +    +    +                 L    F       
Sbjct: 53  -------QPNVVLMDVRMPNMNGIEATGEIVSEN--------PEVKVLILTTFDLDEYAF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANM------- 172
                  + +         +   +  +      I        + + A    +        
Sbjct: 98  GALRAGASGFLLKDAKPEELVAAIRAVAAGDATISPRITKKMLDMFAPQLPDENAGADAA 157

Query: 173 -FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE E L  I+ G T+ E+A  L IS  TV  ++ +I+ K   +
Sbjct: 158 GAGATSADAVALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGAR 217

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ +A  N +V
Sbjct: 218 DRVQAVIFAYENGLV 232


>gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis Bt407]
 gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 215

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETNPDVILMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATAYIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           + + +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEHSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108]
 gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVADDHAFLRDAIRSILEDESDMKVVGEASSGDGVLEKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +  +           L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKNYPN--------CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 225

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      +A +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQAQDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y A++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYSAHLPTGEEQVPDTLSTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a]
 gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a]
          Length = 237

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 82/249 (32%), Gaps = 18/249 (7%)

Query: 1   MNFEIQQVNIVL---NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG 57
           M  E Q+   VL   +  +  R   V         L  ++  +  +             G
Sbjct: 1   MTVEEQRSEEVLPTPSEANPIRVLIVDDHALFRRGLEMVLGQEVDIEVVGEA-----ADG 55

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           +    + +        +D  +      D    +           +     +   +     
Sbjct: 56  SEAVTMAKEMAPDIVLMDVRMPRRGGIDATSAIKE--------AVPSAKIVMLTISDEEA 107

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +           Y      +  +   +  ++    +I      ++  L+ + A +    D
Sbjct: 108 DLYDAIKAGAMGYLLKEISIDEVAADIRAVYGGQSLISPSMASKL--LSEFAAMIKNKDD 165

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+
Sbjct: 166 RPQLPTPRLTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAV 225

Query: 238 AYAVRNNIV 246
            YAVR  ++
Sbjct: 226 VYAVREKLL 234


>gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 213

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  +      +  +           ++                  
Sbjct: 2   IKILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDEVLGKVEECG-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 L   ++      +       
Sbjct: 48  -PDCILMDINLPGKNGIEATELVKK--------FHSSCRVLVFTMYEHDEYLMDALQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   + +L+    +I      ++           +        + ELT
Sbjct: 99  DGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 152 EREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 228

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 63/222 (28%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D           +     +  + E   G    L  R  +     +D  +      
Sbjct: 17  LLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPDVILMDVSMPGMNGI 76

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +           +          +                Y         +   +
Sbjct: 77  EATRAIKAER-----PGVGIL---VLTSYDDDAYVFALLEAGAAGYLLKNASEDELLGAV 128

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +      +           F ++      +  L+ RE+E L   + G+T+ 
Sbjct: 129 RAVAAGESALHPAVARK-------VLERFSTHQTPTPPEDALSPRELEVLRVAATGRTNK 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++A+I  K    +R+ A+ Y ++   +
Sbjct: 182 EIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIKRGWI 223


>gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 241

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 16/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                    +T         +    F      +    +  + +  ++P D V+    +  
Sbjct: 17  FARTMDMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANY 76

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+  +           +    + + +     +F+       L L 
Sbjct: 77  AVIDPTVKHSKVSSSPILWSNELFRGCPDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLA 136

Query: 148 FPKGRIILRDRLWEIGLL----AAYQANMFKSYDV---HWGKDFELTGREVECLTWISEG 200
                 I       + ++    AA         +     +  D E +GRE + L W ++G
Sbjct: 137 RKDNP-ISLQEFEALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KTS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 248

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 33/261 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +                       GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMTVAAQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +  Q        +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRQISSLQHRFAADGTQSEVTHTKVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-------LLAAYQANM 172
           +       + +     +   +   +  +F    II       +         +A      
Sbjct: 108 MAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGRP 167

Query: 173 FKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             S                ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+
Sbjct: 168 ENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHIL 227

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ +A  N++V
Sbjct: 228 SKINARDRVQAVVFAYENHLV 248


>gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 219

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 72/223 (32%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     M    E   G +   L          +D  +     
Sbjct: 6   RVLICDDQVLIRTGLATIIDAQPDMEVAGECGDGRTGVELAGKVRPDVVVMDIRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A +              L    F+             + +        R+  G
Sbjct: 66  IAATRLLAGAGVPH------PVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  D   ++       A   +        D  LT RE+E L  I+EG ++
Sbjct: 120 IRTVAAGAALLDPDVTRQL---VGRYAARIRPTGG-TDPDIPLTPRELEVLRLIAEGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ISR TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 176 SEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVYAYRQGLV 218


>gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
 gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR
 gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1]
 gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1]
 gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719]
 gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192]
 gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18]
 gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58]
 gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016]
          Length = 239

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARI 140
             +   +    +   T+   P+F                    AG+              
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGE 124

Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVEC 193
              L L        +    +   L  + +L  Y               K   LT RE E 
Sbjct: 125 LGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 185 LQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 213

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++++VL  +       +  +      +  +      +     +               
Sbjct: 1   MSKISVVLADDHVLVRKGLKKILEMESDIEVVGEASNGLEAVEEVRT------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +             +   +   ++      +    
Sbjct: 48  --KAPDVVLMDINMPKLNGVEATRVLKKESL--------KTKVIILTIYDDREYLLELLK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     D   +   +  +      I         L+A Y  N          +  
Sbjct: 98  TGISGYILKDIDPQALVEAVRAVSRGETYIQPTLTR--ALIAEY--NRLSQPISRASR-- 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E + +I+EG ++ EI+  LGIS  TV N+++SI+RK     R+    YA++NN
Sbjct: 152 PLTAREKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSSILRKLNLMDRTQVAVYALKNN 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|205375039|ref|ZP_03227830.1| DegU [Bacillus coahuilensis m4-4]
          Length = 225

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 66/244 (27%), Gaps = 28/244 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V IV+  + +     V  +         +   D                G     L    
Sbjct: 2   VKIVIIDDHQLFREGVKRILDFEPYFDVVAEGDD---------------GEQAIQLYEEH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 +   +               
Sbjct: 47  HPDVVIMDINMPVINGVEATRRLIDR--------YPHAKIIILSIHDDESYVSHALQTGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGK 182
             Y     D   +   + ++   G  +       +      L+                 
Sbjct: 99  LGYLLKEMDADALVNAVKVVSEGGSYLHPKVTHNLVREYRQLIKEQHQQTVYQPVEIRRP 158

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  +++G ++  I   L IS  TV N++++I++K     R+ A+  A++
Sbjct: 159 LHLLTRRECEVLQLLADGCSNRTIGETLYISEKTVKNHVSNILQKMNVNDRTQAVVTAIK 218

Query: 243 NNIV 246
              V
Sbjct: 219 KGWV 222


>gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V IV+  +     S    L +    +  +            +                  
Sbjct: 3   VKIVVVDDQAMVRSGFVALLSTQPDIEVVGTAADGSEALQVVRRT--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R ++ +          +   +    F              
Sbjct: 48  HPDVVLMDVRMPVMDGIEALRQLSEN------PATAQTKVVMLTTFDADEYVHESLRLGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++      ++      Q            +  +LT
Sbjct: 102 SGFLLKDASPDELASAIRVVHAGEALLSPSVTRQV----IAQFARAPRKRKQDPRLKQLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G ++ EIA  L ++  TV  +++ I+ K   + R+ A+ +A  + +V
Sbjct: 158 EREREVLENIARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESGLV 216


>gi|229174002|ref|ZP_04301538.1| Response regulator [Bacillus cereus MM3]
 gi|228609334|gb|EEK66620.1| Response regulator [Bacillus cereus MM3]
          Length = 566

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 96/258 (37%), Gaps = 15/258 (5%)

Query: 1   MNFEIQQV--NIVLNREDEQRTSFVSHLPTRSDL---LARMIPLDCTVSWTMRMYALTEY 55
           M   ++QV   + L+   EQ T  V ++P ++ L   + R++ +D     T  +  + E+
Sbjct: 312 MKDRLEQVQGTLSLHSNVEQGTFIVCNIPLQTKLAHDIIRLLVVDDQALITNSLERILEH 371

Query: 56  ------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
                 VG ++       L ++ + D ++      ++    AL E  + +  ++      
Sbjct: 372 QTDFIVVGKAYDGSEALKLCEQLQPDIVLMDIQMPEMNGIEALLEMKRRWPNIKIVLMTT 431

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
              F    +  T        Y   +     ++  L L++  G  I +     I      Q
Sbjct: 432 ---FEDSLQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMKLQ 488

Query: 170 ANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                          + LT RE+E L  +S G     IA  L +S  T+ NY +++  K 
Sbjct: 489 REQLAKIKSTKQTSPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYSKL 548

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R  AI  A   NI+
Sbjct: 549 GVNNREEAIKKARTENIL 566


>gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense]
          Length = 275

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 73/243 (30%), Gaps = 17/243 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS--IV 78
           + ++ +      L  +  L         +  + E  G      +       +       +
Sbjct: 29  ASIAAMSGLDATLEEIGQLGDAEKIPALLQRIAERYGLKTVAYLGTGTLDRRVPRQEPFI 88

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMD- 127
           +  +P + V              +Q       P+                      G+  
Sbjct: 89  AVTYPPEWVERYRARGYINIDPAIQIGLRRLLPIDWDEFGKAEGDLRQFFGEASEFGLGL 148

Query: 128 NRYCSLTFDVARIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                        R    +       +     R       ++AA+        D  +   
Sbjct: 149 RGISFPVHGCGGDRALFSVTADFSKREWHWARRTAFRHFPIIAAHLHEAVLRTDGVFRSQ 208

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+ECL W SEGKT  E  VILG+S +TV  Y+ S   K    + + A + A ++
Sbjct: 209 PRLSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLATKS 268

Query: 244 NIV 246
            ++
Sbjct: 269 GLL 271


>gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
 gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           BDRD-ST26]
          Length = 215

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALMKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N +V
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGVV 215


>gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis]
          Length = 229

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 73/249 (29%), Gaps = 30/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +VNIV+  + +     V  +         +   D                G     +V
Sbjct: 1   MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDD---------------GDEAARIV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    +  + +                 +   +            
Sbjct: 46  EHYHPDVVIMDINMPNVNGVEATKQLVEL--------YPESKVIILSIHDDENYVTHALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-------DRLWEIGLLAAYQANMFKSYD 177
                Y     D   +   + ++   G  +         +    +           + Y 
Sbjct: 98  TGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  +++GK++  I   L IS   V N++++I++K     R+ A+
Sbjct: 158 EIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKAVKNHVSNILQKINVNDRTQAV 217

Query: 238 AYAVRNNIV 246
             A++N  V
Sbjct: 218 VVAIKNGWV 226


>gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRRL--LDKYAGHLPSGEEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  +++G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 EREVEVLKLVAKGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 225

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +       + + R++  +                G+    +V         +D  +
Sbjct: 4   RIAIIDDHQLFREGIKRILEFEEEFEVVAE-----GADGSEALSIVEEHRPDIVIMDINM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            +    +  + +  +  D           +   +       +         Y     D  
Sbjct: 59  PNINGVEATKQLIETYPD--------TKVVVLSIHDDENYVMRALQTGATGYLLKEMDAD 110

Query: 139 RIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   + ++   G  +      + + E   LA+ +    +           LT RE E L
Sbjct: 111 TLIEAVKIVAEGGSYLHPKVTHNLIREYRRLASEKGENKERKREVRWPLHLLTRRECEVL 170

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N  V
Sbjct: 171 QLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNGWV 222


>gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
 gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319]
 gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM
           B1551]
 gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319]
          Length = 227

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 72/246 (29%), Gaps = 29/246 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  I++  + +     V  +         +   D                G+    LV  
Sbjct: 2   QTRIIIIDDHQLFREGVKRILDFEKDFEVVAEGDD---------------GSEVIDLVEE 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +    +  + +     D           +   +              
Sbjct: 47  HQPDVVIMDINMPAVNGVEATKKLVEVNPD--------AKVIILSIHDDETYVTHALQTG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHW 180
              Y     D   +   + ++   G  +       +             ++         
Sbjct: 99  ARGYLLKEMDADALIEAVKVVAEGGSYLHPKVTHSLVKEYRRLAAQGQSSSYPHEPIEIR 158

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A
Sbjct: 159 RPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVA 218

Query: 241 VRNNIV 246
           ++N  V
Sbjct: 219 IKNGWV 224


>gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 240

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 18/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
              +        M  LT+ +G + FL++        ++ +  + ++WP ++V        
Sbjct: 15  AGFNTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKIITNWPAEMVDYYDSHNL 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDVARIR 141
                V++R      P  + +                ++    GM+        D A  R
Sbjct: 75  MVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGR 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEG 200
             + +   +   +L   + +I  +A    +           K    T  E++CL   + G
Sbjct: 135 GAMSISGSRNFTML--EMAKILFIATLIYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + S EIA +L +S N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 193 RKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|269124386|ref|YP_003297756.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309344|gb|ACY95718.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 222

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +    D +A +               L               
Sbjct: 2   IRVLLADDQRLVRAGFRSILADEDDIAVVGEAGDGEQTVEACRRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L+    +    F           G  
Sbjct: 47  RPDVVLMDIRMPGMDGLEATRRITA------DPRLENVRVVILTTFDLDDYVYAALRGGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     +   +   + +      +I       +      +            +   LT
Sbjct: 101 CGFLVKDTEPQELIRAVRVAARGDALISPSVTRRL----IAEFTGRVKAPAPDPRLNALT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  ++ G ++DEIA  L +S  T   +++ IM K   + RS  +  A  + +V
Sbjct: 157 EREREVMRLVAAGLSNDEIAGRLVLSPATAKTHVSRIMSKLGVRDRSQLVVLAYESGMV 215


>gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 226

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 26/245 (10%)

Query: 3   FEIQQVNIVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
              + +NI+L  +DE  R   V+ L    D+L  +   +                G +  
Sbjct: 1   MNSKPLNILLVEDDELFRLGLVTRLQQEGDILI-VAEAED---------------GETAV 44

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            LV    F    LD  +      +  R +   +      VL   +    P+ + + E   
Sbjct: 45  ELVSQHSFDVVILDVGLPGIGGVEACRQIKQKQ--PLLPVLVLTSHSQKPLINRIIEAK- 101

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   YC        + + +  +             EI                 + 
Sbjct: 102 -----AQGYCLKGIAPEALILAIRSVAAGASWWDSIATQEIQKTFGQ-FAEVPEGSEAYS 155

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L  I+ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A+
Sbjct: 156 ASNPLTKREQEILALIASGKSNQEIADILYIAPGTVRVHVHTILKKLNARDRTQAALVAI 215

Query: 242 RNNIV 246
           +  +V
Sbjct: 216 QKKLV 220


>gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           HaA2]
          Length = 240

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 74/229 (32%), Gaps = 15/229 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE---QKLDSIVSSDWPFDLVR 88
            +A +   +       ++  +    G S  L       +    Q++ ++V   WP     
Sbjct: 12  FVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANVVLHRWPLRWSE 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN-----------ITPPAGMDNRYCSLTFDV 137
                        ++R +    P   +  +                 G+   +      +
Sbjct: 72  RYFSRGYLFEDPTIRRVSTSSEPFVWSELQVGPDARANEIMREAGEFGLGCGFTVPMITL 131

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                GL  +      +       + L+A Y                 LT RE + L WI
Sbjct: 132 DGQSAGLS-IAGDRAELPPSHRGMVQLVAMYAFLRSLKLGEKPTPAITLTKREADVLHWI 190

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKT  EI+ IL +S + V+     I  K     R  A+A A+R+ I+
Sbjct: 191 AEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGII 239


>gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  +      +  +           ++                  
Sbjct: 2   IKILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDEVLGKVEECG-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +          +      L   ++      +       
Sbjct: 48  -PDCILMDINLPGKNGIEATELVKK--------IYPSCRVLVFTMYEHDEYLMDALQVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   + +L+    +I      ++           +        + ELT
Sbjct: 99  DGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G ++ EIA  L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 152 EREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 253

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 14/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V         L  ++  +  +             G     + R  L     +D
Sbjct: 34  DPIRVLIVDDHALFRRGLEMVLADEPDIEVIGE-----GGDGNEAVEMARDLLPDVLLMD 88

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +           +     +   +     +         + Y     
Sbjct: 89  IRMPRRSGIEACRAIKE--------AVPSAKIVMLTISDEDTDLFEAIKAGASGYLLKEI 140

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  +   +  +     +I      ++    A  A   +          +LT RE+E L 
Sbjct: 141 SIDEVPQAVRAVHGGQSLISPSMASKLITEFAALAKRSEERQQQV-PAPKLTEREMEVLR 199

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  ++
Sbjct: 200 LVARGLGNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAVREKLL 250


>gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4]
          Length = 223

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +S +    + L  +           +    T              
Sbjct: 3   IRIMIVDDQALMRDGLSSILQLKEELEVVATASNGQDAFEKARKFT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +              L    F      +       
Sbjct: 49  -PDIILMDIRMPGSSGVEGTRLIHRANLP--------VKVLMLTTFKDTELILQALEEGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFEL 186
           + Y         I   +  ++  G ++  D   ++ L       + F+       +   L
Sbjct: 100 SGYLLKDMPTDTIVQAIKTVYSGGVVLPEDLTAQLFLDKRKTPPSDFEPVGQPVDRSL-L 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE   L+ + +G  + EIA  L I+  TV N++++I+ K   + R+ A  YAVR+ I
Sbjct: 159 TEREWGVLSELGKGLNNREIAEALYITEGTVKNHVSNIISKLEVRDRTQAAIYAVRHGI 217


>gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 224

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      +A +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRRL--LDKYAGHLPSGEEPVPDTLNSLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYAGHLPSGDEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 EREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator
           [Thermoanaerobacter sp. X514]
 gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X514]
 gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 208

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 21/220 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  +++   G   + L +  +     +D  +     
Sbjct: 3   RLLVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +   +             LF  +++     +         Y     +   +   
Sbjct: 63  IKAAKMLKEEKHP--------SKVLFLTIYNDREYLLEALKLGVEGYILKDAEYDDLIKA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++  G  I    + EI  +                   +LT RE+E L  IS+G ++
Sbjct: 115 IKTIYNGGVYIHPSLMEEIDNIDQETLKK------------DLTPREIEILKLISKGYSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S  TV N++ +I +K   K R+ A  Y ++N
Sbjct: 163 KEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKN 202


>gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 242

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 76/253 (30%), Gaps = 36/253 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  + +     +  +    D L  +      +                       
Sbjct: 11  KIKVLLADDHQLFREGLKRILNMEDDLEVIGECGDGIQVLE---------------FCNH 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            + +   +D  +  +        +          +      +   +              
Sbjct: 56  TIPEIVLMDINMPIENGVVTTERLKT--------IFPDVKVIILSIHDDESYVFETLRKG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-------------EIGLLAAYQANMF 173
              Y     +   +   +  +      I                   E+G+++   A M 
Sbjct: 108 ATGYLLKDMEAESLINAIRSVVNGHAYIHPKVTGKLINQLRRMTYLDEMGVISGAAAGME 167

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G+D  LT RE E L  ++EGK++  I   L IS  TV N+++SI++K     R
Sbjct: 168 PGVKFVAGEDNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDR 227

Query: 234 SGAIAYAVRNNIV 246
           + A+  +++   V
Sbjct: 228 TQAVIQSIKYGWV 240


>gi|329935654|ref|ZP_08285461.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304915|gb|EGG48786.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score =  138 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 73/224 (32%), Gaps = 7/224 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           ++    +  + E   GA    L R        +D  +    
Sbjct: 3   TRVLIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGARGVELSRRTHPDVVLMDVRMPEMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +          V   P  L    F              + +       A +  
Sbjct: 63  GLEAARRL----LTPPAGVTHVPRVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++     ++       +  +A +  +          +   LT RE E LT ++ G +
Sbjct: 119 AVRVVASGDALLAPSVTRRL--IADFAKSRPGGRGGPAQRLKGLTQRETEVLTLVARGLS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 177 NSEIAETLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 220


>gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 237

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 25/243 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E   + +++  +       +  +  +   +  +                    GA    +
Sbjct: 17  EANPIRVLIVDDHALFRRGLEMVLGQEVDIEVVGEAAD---------------GAEAVTM 61

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            +        +D  +      D    +           +     +   +     +     
Sbjct: 62  AKEMAPDIVLMDVRMPRRGGIDATSAIKE--------AVPSAKIVMLTISDEEADLYDAI 113

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y      +  +   +  ++    +I      ++  L+ + A +    D      
Sbjct: 114 KAGAMGYLLKEISIDEVAADIRAVYGGQSLISPSMASKL--LSEFAAMIKNKDDRPQLPT 171

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR 
Sbjct: 172 PRLTDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVRE 231

Query: 244 NIV 246
            ++
Sbjct: 232 KLL 234


>gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 213

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E       L  V         +D  +      
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMKVVGEASSGDGVLGKVEECRPDCILMDINLPGKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +              L   ++      +       + Y        ++   +
Sbjct: 64  EATELVKKN--------YPSCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVLAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +L+    +I      ++           +        + ELT RE E L  + +G ++ 
Sbjct: 116 RMLYRGDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 169 EIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 248

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 33/261 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +                       GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMTVAAQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +  Q        +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRQISALQHRFAADGTQSEVTHTKVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-------LLAAYQANM 172
           +       + +     +   +   +  +F    II       +         +A      
Sbjct: 108 MAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGRP 167

Query: 173 FKSYDVHWGKDF-------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             S                ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+
Sbjct: 168 ENSATTSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHIL 227

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ +A  N++V
Sbjct: 228 SKINARDRVQAVVFAYENHLV 248


>gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 215

 Score =  138 bits (348), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+       E   D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALI----KVGETNPDVVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +   K Y  ++    +    F      +       + Y     +  ++   + 
Sbjct: 61  MDGVEATACIKKEYPDVK---VIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D    +           +   +       LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N +V
Sbjct: 175 IASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGVV 215


>gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
 gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-44]
          Length = 215

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGQEALMKVEETQPDIVLMDLYMPEMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     +           L    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPN--------VKVLVLTSFSDQAHVLPALKAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D      LL+            +   D  LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIA--SSLLSQTLPQEEAEVPSNIHVDV-LTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLQLSDRTQAALYAVKNGIV 215


>gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 215

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALMKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     D           +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPD--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 213

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++ +D        + ++ E       VG +          +E + D I+           
Sbjct: 4   ILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLGKVEECRPDCILMDINLPGKNGI 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A     K Y        L   ++      +       + Y        ++   + +L+ 
Sbjct: 64  EATELVKKNYPS---CRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYR 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I      ++           +        + ELT RE E L  + +G ++ EIA +
Sbjct: 121 GDSVIHPRMTKKLIT-------YHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEV 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  +I  I +K   K+RS A+ YAVRN +V
Sbjct: 174 LYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210


>gi|300087810|ref|YP_003758332.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527543|gb|ADJ26011.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 228

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 67/222 (30%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         +     M  + E   G     L R        +D  + +   
Sbjct: 8   RVLLADDHIIVREGTREMLERQPDMQVVAEANDGVDAVELARIYRPDVIVMDIAMPNMNG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           L     L    + +    +         Y        ++   
Sbjct: 68  IEATREIKK--------FLPTTAILILTAYDSDQYIMALIEAGAAGYMLKNVRGNQLIDA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     I+       +    +    + +           LT RE+E L   ++G ++
Sbjct: 120 IRAVHSGESILQPSTTRRVINQLSKNNPIKREDTESDAPAHALTEREMEVLRLAAKGVSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + A  L +S  TV  ++++I +K    +R+ AI Y ++   
Sbjct: 180 RDTAEQLYLSSRTVQTHLSNIFKKLNVASRTEAILYGLKRGW 221


>gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR
 gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens]
          Length = 244

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                    +T+        +    F      +    +  + +  ++P   ++    +  
Sbjct: 20  FAQAMNMEEFTVVALRALRELRFDFFAYGMCSVTPFMRPKTYMYGNYPEHWLQRYQAANY 79

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+  +           +    + + +     +F+       L L 
Sbjct: 80  ALIDPTVKHSKVSSAPILWSNELFRNCPDLWSEANDSSLCHGLAQPSFNTQGRVGVLSLA 139

Query: 148 FPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I L++              A  + +  ++    +  D E + RE + L W ++GK
Sbjct: 140 RKDNAISLQEFEALKPVTKAFAAAALEKISALETDVRAFNTDVEFSERECDVLRWTADGK 199

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 200 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGYI 244


>gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)]
          Length = 241

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                    +T         +    F      +    +  + +  ++P D V+    +  
Sbjct: 17  FARTMDMQEFTAVALRALRELRFDFFAYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANY 76

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+  +           +    + + +     +F+       L L 
Sbjct: 77  AVIDPTVKHSKVSSAPILWSNELFRGCADLWSEAKDSHLCHGLAQPSFNAQGRVGVLSLA 136

Query: 148 FPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I L++              A  + +  +S    +      +GRE + L W ++GK
Sbjct: 137 RKNNPISLQEFEALKPVTRAFAAAAHEKISELESDVRVFNTGVAFSGRECDVLRWTADGK 196

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS+EI VI+G+  +TVN +  +I RK     R  A++YAV    +
Sbjct: 197 TSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241


>gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L]
 gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L]
 gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC
           6E1]
 gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           95/8201]
 gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 215

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+       E   D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALV----KVGETNPDVVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +   K Y  ++    +    F      +       + Y     +  ++   + 
Sbjct: 61  MDGVEATACIKKEYPDVK---VIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D    +           +   +       LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 175 IASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 223

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 13/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P        ++  +  V+            G      VR        +D 
Sbjct: 2   AIRVLLVDDQPLLRTGFRMILEAEPDVAVVGEAGD-----GVQALDQVRALQPDVVLMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  +  ++   V      L    F      +       + +      
Sbjct: 57  RMPRMDGVEATRQI--TGPERDGPV----KVLVLTTFDLDEYVVEALRAGASGFLLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++       +  L  Y  ++    +        LT REVE L  
Sbjct: 111 AHELVQAIRVVASGEAMLAPSVTRRL--LDKYAGHLPSGEEQPPSTLQTLTEREVEVLKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  +A  + +V
Sbjct: 169 VARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVFAYESGLV 218


>gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
 gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-42]
          Length = 215

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALVKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+            Q    +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKE--------YQDVKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEESSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 236

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 12/226 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L      +        +      +G  +        F       ++ S++P         
Sbjct: 11  LNEFSRSENPQHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIE 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        ++       PV  + P               G+ + + S +         L
Sbjct: 71  ARFANIDGAVKAALGSDLPVTWSAPANASKSAFWAEALSFGIAHGWSSASRGADGAIGVL 130

Query: 145 MLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
            L   +  I   ++      +  LA         +     + D +LT RE + L W ++G
Sbjct: 131 TLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A    ++
Sbjct: 191 KTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 215

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S       + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDFELVGEANNGKEALVKVGETSPDVVLMDLYMPEMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPN--------VKVIVLTSFSDQAHVLPALKAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D      LL+       K  +     D  LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDVAN--ALLSQTLPEEEKEEEPSIQVDV-LTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIAAVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G      VR        +D  +     
Sbjct: 4   RVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQAIDQVRALQPDVVLMDIRMPRMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +    +D           L    F      +       + +         +   
Sbjct: 64  VEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  L  Y  ++    +        LT REVE L  ++ G ++
Sbjct: 118 IRVVAAGEAMLAPSITRRL--LDKYATHLPSGDEPVPDTLHTLTDREVEVLKLVARGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 176 AEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 240

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 66/242 (27%), Gaps = 25/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V++VL  +          +    + +  +                    G S     + 
Sbjct: 21  PVSVVLADDQALMRMGFRMVLEAEEDITVVGEASD---------------GTSALAQAKA 65

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +A                L    F             
Sbjct: 66  LHPDVILMDVRMPGMNGIEATERIAQE--------CPSTRVLILTTFDLDEYAFAGLRAG 117

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
            + +         +   +  +     ++        + + A    +             +
Sbjct: 118 ASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAGSLPSSEAPAQSSSDPRID 177

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    
Sbjct: 178 SLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETG 237

Query: 245 IV 246
           ++
Sbjct: 238 LM 239


>gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa
           E681]
          Length = 240

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 70/252 (27%), Gaps = 35/252 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + +     +  +    D +  +      +                       
Sbjct: 10  PIKVLLADDHQLFREGLKRILNMEDDIEVIGECGDGIQVLE---------------FCNV 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +  +   +    +          +      +   +              
Sbjct: 55  EKPDIVLMDINMPIENGVEATEKLRE--------MFPDVKVIILSIHDDESYVFETLRKG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ------------ANMFK 174
            N Y     +   +   +  +      I      ++                        
Sbjct: 107 ANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAMAEGHTKEA 166

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI++K     R+
Sbjct: 167 GVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRT 226

Query: 235 GAIAYAVRNNIV 246
            A+  +++   V
Sbjct: 227 QAVINSIKYGWV 238


>gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
 gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1]
          Length = 259

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 18/222 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                + ++  +TE +G  H+L          + +++V ++ P    +    +E   +  
Sbjct: 22  DFEDLSGKLAEVTEVIGFEHYLFAVSVPVTVMRAENVVLTNQPLAWRQFYEDNEVMYFDQ 81

Query: 101 VLQRPTELFCPVFHTLPEN-----------ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           V+        P+                  +    G+ +               +     
Sbjct: 82  VVLHCRNSMLPLQWRSLLANDIPDDKNVIKLASDFGLGDGITIPLRANHGCLGLISFSNR 141

Query: 150 KGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKD------FELTGREVECLTWISEGKT 202
           KG   I  +       + +  A+       H  +         LT RE  CL W++EGK+
Sbjct: 142 KGTRKIDHESTILSTYVGSLVADYINDIRNHVCEKQFGQVKSSLTLREQICLAWVAEGKS 201

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           S E+A I+G S  TVN +I +   K    +R+ A++ A+   
Sbjct: 202 SWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAVSKALLTG 243


>gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 237

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           + E+  R   V         L  ++  +  +             G+    +         
Sbjct: 16  SEENPIRVLIVDDHALFRRGLEMVLAQEPDIEVVGEA-----ADGSEAVTMAGEMAPDIV 70

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      D    +           +     +   +     +           Y  
Sbjct: 71  LMDVRMPRRGGIDATSAIKE--------AVPSAKIVMLTISDEEADLYDAIKAGAMGYLL 122

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               +  +   +  ++    +I      ++  L+ + + +    D        LT RE+E
Sbjct: 123 KEISIDEVAADIRAVYNGQSLISPSMASKL--LSEFASMIKNKDDRPQLPTPRLTDREME 180

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR  ++
Sbjct: 181 VLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234


>gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115]
          Length = 218

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D           +     ++ + E   G    +  R        +D  +      
Sbjct: 7   LLLVDDHPVVRKGTRELLEGETDLHVIGEAGSGEEAVVKARDLQPDVILMDVSMPGMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    +                Y         +   +
Sbjct: 67  EATKAIKAER--------PGVGVLVLTSYDDDAYIFALLEAGAAGYLLKNASEDDLLGAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +      +           F ++      + +L+ RE+E L   + G+T+ 
Sbjct: 119 RAVAAGESALHPSVARK-------VLERFSTHTTPTPPEDDLSPRELEVLRVAATGRTNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++A+I  K    +R+ A+ + ++   +
Sbjct: 172 EIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 213


>gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYATHLPSGDEPVPDTLDTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 240

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 73/259 (28%), Gaps = 37/259 (14%)

Query: 2   NFEIQ--QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           N E+    + ++L  + +     +  +    D +  +      +                
Sbjct: 3   NQEMSNAPIKVLLADDHQLFREGLKRILNMEDDIEVIGECGDGIQVLE------------ 50

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                  +      +D  +  +   +    +          +      +   +       
Sbjct: 51  ---FCNVEKPDIVLMDINMPIENGVEATEKLRE--------MFPDVKVIILSIHDDESYV 99

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---------- 169
                   N Y     +   +   +  +      I      ++                 
Sbjct: 100 FETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAMA 159

Query: 170 --ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                        G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI++K
Sbjct: 160 EGHTKEAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQK 219

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ A+  +++   V
Sbjct: 220 MEVDDRTQAVINSIKYGWV 238


>gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
 gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis IBL 200]
          Length = 215

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLALVGEANNGKEALVKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D       L +    + +  +  + +   LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIAN---TLLSQTLPVEEKEEEPFLQVGVLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 223

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   VRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYATHLPSGDEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens
           TA208]
 gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 214

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 16/218 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    +    +  + E   GA               +D  +      +  
Sbjct: 6   ADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTGPDIILMDLSMPDMDGIEAA 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A         V+          +      I         Y         +   L  +
Sbjct: 66  N-IAAERFPDISIVV-------LTSYSDREHVIPALKAGAKAYQLKDAQPDDLVKTLREV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +  D       +  +  N     D +  K ++LT RE + L  I++GK++ EIA
Sbjct: 118 YSGRYRLSAD-------IVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEIAKGKSNKEIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV  ++++++ K     R+ A  YAV+ NI
Sbjct: 171 ASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNI 208


>gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +     +    +      +A +      +    ++ AL               
Sbjct: 3   VRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAGGEAMLAPSITRRL--LDKYAEHLPSGDEQVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
 gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production
           enhancer protein) [Planococcus donghaensis MPA1U2]
          Length = 224

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 13/229 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   + +      + E   G     L   +      +D  +   
Sbjct: 1   MTKIIIIDDHQLFREGVKRILDFESSFEVVAEGGDGGEVIKLYEENRPDVVLMDINMPQK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +    +                 +   +                 Y     D   I 
Sbjct: 61  NGVEATAELIAQ--------FPDAKVIMLSIHDDESYVTHALKTGALGYMLKEMDADAII 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKDFELTGREVECLTWI 197
             + ++   G  +       + +     +                   LT RE E L  +
Sbjct: 113 QAIKVVAKGGSYLHPKVTRNLVMEFRRLSERENKGSFHQTEIRRPYHLLTKRESEVLQLL 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G+++  I   L IS  TV N+++SI++K     R+ A+  A++N  V
Sbjct: 173 TDGQSNRVIGETLFISEKTVKNHVSSILQKMQVNDRTQAVVTAIKNGWV 221


>gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 207

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +     +              L    +      I+      + Y     +  ++
Sbjct: 61  MNGIE-ITEYIKAHYPDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDIEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I                ++F++         +L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNGEKMIHP-----------KAQDVFETVSQKPHYTNKLSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARI 140
             +   +    +   T+   P+F                    AG+              
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGE 124

Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVEC 193
              L L        +    +   L  + +L  Y               K   LT RE E 
Sbjct: 125 LGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 185 LQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 224

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 16/231 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +       + + R++  +                G+    +V         +D  +
Sbjct: 4   RIAIIDDHQLFREGIKRILEFEGDFEVVAE-----GSDGSEALSIVETYRPDLVLMDINM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +                 +   +       +         Y     D  
Sbjct: 59  PDINGVEATKQLIE--------AYPDTKVVVLSIHDDENYVMRALQTGAAGYLLKEMDAD 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLT 195
            +   + ++   G  +       +                          LT RE E L 
Sbjct: 111 TLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTEKGGAVVKQEVRRPLHLLTRRECEVLQ 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++GK++  I   L IS  TV N+++SI++K +   R+ A+  A++N  V
Sbjct: 171 LLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVNDRTQAVVVAIKNGWV 221


>gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 234

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 12/226 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L      +        +      +G  +        F       ++ S++P         
Sbjct: 9   LNEFSRSENPQHVNSVLTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIE 68

Query: 93  SEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGL 144
           +      + ++       PV  +                 G+ + + S +         L
Sbjct: 69  ARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAHGWSSASRGADGTIGVL 128

Query: 145 MLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
            L   +  I   ++      +  LA         +     + D +LT RE + L W ++G
Sbjct: 129 SLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADG 188

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A    ++
Sbjct: 189 KTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 234


>gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 74/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   E+D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPERDG------PAKVLVLTTFDLDEYVVEALKAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVANGEAMLAPSITRRL--LDKYATHLPSGDEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme
           [Oceanobacillus iheyensis HTE831]
          Length = 230

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 76/245 (31%), Gaps = 28/245 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V IVL  + +     V  +         +   D                G+    LV+ 
Sbjct: 6   EVRIVLIDDHKLFREGVKRILDFEPSFEVVAEGDD---------------GSMASKLVKE 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +           +                 +   +              
Sbjct: 51  NAPDVVLMDINMPEINGVQATADLVRY--------FPNSKVIILSIHDDESYVTHALKTG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWGK 182
              Y     D   +   + ++   G  +       +      LA   ++      + + K
Sbjct: 103 AQGYLLKEMDSDALIDAIKVVSDGGSYLHPRVTHNLVKEYRRLAKENSSSIADKGIEYRK 162

Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE + L  +++GK++  +A  L IS  TV N++++I++K     R+ A+  A+
Sbjct: 163 PLHLLTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNVNDRTQAVVSAI 222

Query: 242 RNNIV 246
           R   V
Sbjct: 223 RKGWV 227


>gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 227

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V            ++     +             G                +D
Sbjct: 7   DPIRVLIVDDQAMVRQGFTVLLGTQPDIEVVGEAKD-----GEGGVAKAAETAPDVVLMD 61

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +    +  +  D           L    F              + +     
Sbjct: 62  IRMPGIGGIEATERITAAHPDI--------RVLVLTTFDLDEYVYDALRAGASGFLLKDA 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++   + ++     ++      ++    +   +  +       +  +LT RE E L 
Sbjct: 114 SSDQLAEAVRVIAAGDALLAPVITRKLIAEFSRLDDRPR--APLKERIGDLTERETEVLA 171

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 172 LIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 222


>gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 207

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +     +              L    +      I+      + Y     +  ++
Sbjct: 61  MNGIE-ITEYIKAHYPHI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I                ++F++         +L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNGEKMIHP-----------KAQDVFETVSQKPHYTNKLSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 215

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+      QE + D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALV----KVQEVQPDIVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +   K Y  ++         F      +       + Y     +  ++   + 
Sbjct: 61  MDGIEATACIKKEYPNVKVL---VLTSFSDQAHVLPALKAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D      LL+       +    +   D  LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIA--SALLSQTFPQEEQQESSNIHVDV-LTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 175 IASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGIV 215


>gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 236

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 12/226 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L      +        +      +G  +        F       ++ S++P         
Sbjct: 11  LNEFSRSENPKHVISVLTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPARWQERYIE 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        ++       PV  + P               G+ + + S +         L
Sbjct: 71  ARFANVDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAHGWSSASRGADGAIGVL 130

Query: 145 MLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
            L   +G I   ++      +  LA         +     + D +LT RE + L W ++G
Sbjct: 131 SLSRTQGPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A    ++
Sbjct: 191 KTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
          Length = 236

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 12/226 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L      +        +      +G  +        F       ++ S++P         
Sbjct: 11  LNEFSRSENPQHVNSVLTRAAATLGYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIE 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGL 144
           +      + ++       PV  +                 G+ + + S +         L
Sbjct: 71  ARFANVDSAVKAALGSDRPVTWSASTNASKSAFWAEALSFGIAHGWSSASRGADGTIGVL 130

Query: 145 MLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
            L   +  I   ++      +  LA         +     + D +LT RE + L W ++G
Sbjct: 131 SLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A    ++
Sbjct: 191 KTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 239

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 10/234 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
              D  R      +    D    +  L   +     +  +     G    +L        
Sbjct: 11  ADADPTRNGAPIRVLVVDDHELFLQGLQVVLDTEDDISVVGRAADGQEALVLASGTAPDI 70

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           +  S        + R   +   V     +           Y 
Sbjct: 71  VLMDVRMPGRDGIAAAGAIKRS--------VPRVRVVMLTVSDEESDLFEAIKAGAVGYL 122

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +  +     +I      ++ ++           D        LT RE+
Sbjct: 123 LKSIPPHEVADAVRAVHSGQSLISPSMASKL-MVEFATMARGGGEDRPRAHAPHLTAREL 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 182 EVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235


>gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 213

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 34/243 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +V+  + +     +  L      +  +                    G      V
Sbjct: 1   MGTIRVVIADDHKMVREGLKQLLELDGDIQVVGEASD---------------GEQCIQKV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  + +      ++ +  +   +          L   + + +   +    
Sbjct: 46  VDTNPDVLLLDINMPTMNGLQTLQELRRNNNKQ--------KVLMLTIHNEIEYLLRAVD 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y     + + ++  +  ++     I      E+           +        + 
Sbjct: 98  IGVNGYVLKDSESSVLKKAIYTIYQGETYIEPSLTPEL----------KERMQSPSSSNT 147

Query: 185 E-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E LT RE++ L  ++EG  + EIA  L IS  TV N++++I +K +   R+ A  YA++N
Sbjct: 148 EILTRREIDVLKLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDRTQAAVYAIKN 207

Query: 244 NIV 246
           N V
Sbjct: 208 NFV 210


>gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 226

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 18/233 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +       + + R++  +                G+    +V         +D  +
Sbjct: 4   RIAIIDDHQLFREGMKRILEFEEEFEVVAE-----GADGSEALAIVEQHRPDIVIMDINM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            +    +  R +          +      +   +       +         Y     D  
Sbjct: 59  PNTNGVEATRQLVE--------MYPDTKIVVLSIHDDENYVMRALQMGATGYLLKDMDAD 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVEC 193
            +   + ++   G  +       +       +      +    ++       LT RE E 
Sbjct: 111 TLIEAVKIVAEGGSYLHPKITHNLIREYRRLSAGKNEKEGEGKREARWPLHLLTRRECEV 170

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++GK++  I   L IS  TV N++++I++K     R+ A+  A++N  V
Sbjct: 171 LQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVIVAIKNGWV 223


>gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 75/240 (31%), Gaps = 21/240 (8%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V+++L  +     +    +   +  L+ +                    G       R 
Sbjct: 2   PVSVLLVDDQPLVRAGFRMILESAPHLSVVGEASD---------------GREAVRATRG 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     +D  +      +  R +          +  R   L    F      +      
Sbjct: 47  LLPDVVLMDVRMPGMDGIEATRQIVS----WARPLGHRVRVLALTTFDLDEYAVEVLRAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A +   + ++      I    L  +  L  +   +  +       +  L
Sbjct: 103 ASGFLLKDAPPAELVSAVEVVADGAAAISPAVLNRL--LDRFAPLLPSASPATEPAEDTL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV +++ SI+ K   + R  A+ YA  + +V
Sbjct: 161 TAREHEVLRLLARGWSNAEIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHGLV 220


>gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein
           [Burkholderia pseudomallei 1710b]
 gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
          Length = 234

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 12/226 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L      +        +      +G  +        F       ++ S++P         
Sbjct: 9   LNEFSRSENPQHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIE 68

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        ++       PV  + P               G+ + + S +         L
Sbjct: 69  ARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAHGWSSASRGADGAIGVL 128

Query: 145 MLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
            L   +  I   ++      +  LA         +     + D +LT RE + L W ++G
Sbjct: 129 TLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADG 188

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A    ++
Sbjct: 189 KTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 234


>gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (luxr family) [Ralstonia
           solanacearum PSI07]
 gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum PSI07]
          Length = 238

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 14/223 (6%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
               T      + A    +G  H            +   I+ +++P         +    
Sbjct: 15  AATSTSDVFAHIEAAALALGFEHVAYGFRAPLPLSEPKIILLNNYPQAWRERYLEAGYLH 74

Query: 98  YYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLML--- 146
               +        PV  + P         +     G+   +   + D   +   L L   
Sbjct: 75  VDPSVAHACRSQAPVIWSDPLFQYTPALWDEAQAQGLRVGWAQSSLDSLGVGGMLSLSRS 134

Query: 147 ---LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              L  +       R+  +  +A    +     D+    D  LTGREVE + W ++GK++
Sbjct: 135 CEPLTARELADNTRRMQWLTHMAHLALSRLLRADLAGDSDDSLTGREVEVMKWTADGKSA 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA IL IS+NTV+ ++ + ++K     ++ A+  A     +
Sbjct: 195 QDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237


>gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 208

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 30/237 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  + E     ++ +    D +  +                    G     L +    
Sbjct: 1   MLLVDDHEMVRIGLAAVLGTEDGIEVVGEASN---------------GEEGIRLTQEYKP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D ++      +  R +                 +    F    +           
Sbjct: 46  DVVLMDLVMEGMDGIETTRKLLQL--------YPECKVIVLTSFLDDEKMYPVLEAGAFS 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   T     I   +        I+           A    N F+          +LT R
Sbjct: 98  YLLKTSRAQEIAQAIRAAVKGQPILESQV-------ATKIMNRFRQPKPESAPHEDLTER 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I+ GK++ E+A  L I   TV  ++ ++++K   + R+ A  YA ++ IV
Sbjct: 151 EMEVLRLIASGKSNQEVADELFIGVKTVKFHVTNVLQKLGVEDRTQAAIYAFKHGIV 207


>gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 264

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 14  REDEQRTSFVS-HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQE 71
            EDE R       +    D       L+  ++    +  + E   G+         L   
Sbjct: 37  DEDEPRPRAEPIRVLVVDDHALFRRGLEIVLATEEDIEVVGEAGDGSEAVEKATDLLPDI 96

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +    +          V      +   +     +           Y 
Sbjct: 97  VLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYDAIKAGATGYL 148

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +      I      ++  L+ +++ + ++ +        LT RE+
Sbjct: 149 LKEISTDEVATAIRAVADGQSQISPSMASKL--LSEFKSMIQRTDERRLVPAPRLTDREM 206

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 207 EVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261


>gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115]
          Length = 231

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D           +     ++ + E   G    +  R        +D  +      
Sbjct: 20  LLLVDDHPVVRKGTRELLEGETDLHVIGEAGSGEEAVVKARDLQPDVILMDVSMPGMNGI 79

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    +                Y         +   +
Sbjct: 80  EATKAIKAER--------PGVGVLVLTSYDDDAYIFALLEAGAAGYLLKNASEDDLLGAV 131

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +      +           F ++      + +L+ RE+E L   + G+T+ 
Sbjct: 132 RAVAAGESALHPSVARK-------VLERFSTHTTPTPPEDDLSPRELEVLRVAATGRTNK 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++A+I  K    +R+ A+ + ++   +
Sbjct: 185 EIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 226


>gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei]
 gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 236

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 12/226 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L      +        +      +G  +        F       ++ S++P         
Sbjct: 11  LNEFSRSENPQHVISVLTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIE 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        ++       PV  + P               G+ + + S +         L
Sbjct: 71  ARFANIDGAVKAALGSDRPVTWSAPANASKSAFWAEALSFGIAHGWSSASRGADGAIGVL 130

Query: 145 MLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
            L   +  I   ++      +  LA         +     + D +LT RE + L W ++G
Sbjct: 131 TLSRTQDPIDTAEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA+IL IS +TVN ++ +I+ K  +  +  A+A A    ++
Sbjct: 191 KTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 236


>gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia]
 gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                      +   A    +G  H            K   ++ S++P   V        
Sbjct: 12  FATAKSEADVFLEFSADVRALGFDHCSFGLRIPLPISKPQFMLQSNYPQTWVERYVSQNY 71

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+                    G+ + +C  +         + ++
Sbjct: 72  FAVDPTVRHGLSRMSPLIWRADSQTQCVQFWEEAGQHGLRHGWCMPSVSRTGAIGLITMV 131

Query: 148 FPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I  R+   +      +   A Y  +M     +      ELT RE E L W + GK
Sbjct: 132 RSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVREREALQWSAAGK 191

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI  I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 192 TYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236


>gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 233

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 24/242 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + + + +++  + E     +  +    + +  +                    G     +
Sbjct: 12  QSEPIRVLVVDDHELFLQGLETVLDLEEDITVVGRAGD---------------GRQAVTI 56

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      D    +           +     +   V     +     
Sbjct: 57  ATGTTPDIVLMDVRMPYRDGIDAASAIKRE--------VPTAKIVMLTVSDDEADLFEAI 108

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   +     +   +  +     +I      ++ ++                  
Sbjct: 109 KAGAVGYLLKSIPPHEVASAVRAVHNGLSLISPSMASKL-IVEFAALARGSDDRPSRVPA 167

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR 
Sbjct: 168 PHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQ 227

Query: 244 NI 245
            +
Sbjct: 228 GL 229


>gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 73/230 (31%), Gaps = 15/230 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R              A +I     +             G +   L R        +D
Sbjct: 3   EPIRVLICDDQALIRAGFATIIGAQPDLDVVGEC-----ADGRAAVELSRHLNPDIVVMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +A +       V      L    F+             + +     
Sbjct: 58  VRMPVLDGIEATRQLAGAGV--EDPV----KVLVVTTFNLDKYVYEALRAGASGFLLKDA 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A++  G+  +     ++  D   ++       A   +  +     D  LT RE+E L 
Sbjct: 112 PPAQLLHGIRTVASGAALLDPDVTRQL---VGRYAARIRPAEDTPD-DTALTPRELEVLR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+ G ++ EIA  L IS  TV  Y++ I+ K   + R  A+ YA R  +
Sbjct: 168 HIANGLSNSEIAATLVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRGL 217


>gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      +A +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYADHLPSGEEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
 gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC
           4342]
          Length = 215

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALVKVGETNPDVVLMDLYMPEMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+            +    +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKE--------YRDVKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPFIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           m1550]
 gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock4-2]
 gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           F65185]
 gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 215

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETTPDVILMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATAYIKKEYPN--------VKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 214

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + ++L  +       V  +         +               L            
Sbjct: 1   MEPIRLILADDHTLLRQGVRKILELDPRFQVLEEAGDGQGAINLARRL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +   +         +   L         + I    
Sbjct: 49  ---KPDVILMDIHMPGVDGVEATRVLKREQ--------PQTAILVLTAHEEEDQIIRLIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   ++ +   G ++    + ++  LA  + N             
Sbjct: 98  AGVDGYLLKDVSPETLYGAIVTVARGGSVLNPAIVQKV--LAKRRFNR-----TVAHSGD 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G T+ +IA  L IS  TV N+I +I RK   K R+ A  YA++N 
Sbjct: 151 ELTEREKEVLGLIAQGSTNADIASALFISEKTVKNHITNIFRKLQVKDRTQAALYAIKNR 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      +A +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   E+D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPERDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYATHLPSGDEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 EREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
 gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R   L C       +   T+ +   +F L         +    V S +P   +       
Sbjct: 16  RFQELTCADEVYQELQQQTQALEFDYFSLCVRHPVPFTRPKISVHSSYPDRWMAQYKSEN 75

Query: 95  KDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDNR----------YCSLTFDVARIRI 142
                 VL+     +   P    L  +     G                     +  + +
Sbjct: 76  YFAVDPVLKPENFIQGHLPWTDELFADAQELWGGAQDHGIRKGITQCLMLPNHALGFLSV 135

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGK 201
               L           L    L+     ++ +  ++     + + + RE E L W +EGK
Sbjct: 136 SRTSLRENAIHHEEIELRLQMLVQMALTSLLRFEHETVMPPEMKFSKREREILKWTAEGK 195

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 196 TSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim
           5]
          Length = 240

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 18/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
                       M  LT+ +G + FL +        ++ +  + ++WP ++V        
Sbjct: 15  AGFKTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDIVEIGATKIITNWPAEMVDYYDAHNL 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDVARIR 141
                V++R      P  + +                 +    GM+        D A  R
Sbjct: 75  MIDSPVIRRMMRSTSPFNYDVEAINTNRGGGKKSTVIELFNRYGMEKGAYFPVHDAAGGR 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEG 200
             + +   +   +    + ++  +A    +           K  E T  E++CL   + G
Sbjct: 135 GSMSISGSRNFSM--IEMAKLLFIATLIYDRLSQLTLNEKHKPIEFTRSELDCLRLTAGG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +EIA +L ++ N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 193 RKGNEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238


>gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 13/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P        ++  +  ++            G      VR        +D 
Sbjct: 2   AIRVLLVDDQPLLRTGFRMILEAEGDLAVVGEAGD-----GLQAIDQVRALQPDVVLMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +    KD           L    F      +       + +      
Sbjct: 57  RMPRMDGVEATRQITGPGKDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   + ++     ++       +  L  Y  ++    +        LT REVE L  
Sbjct: 111 AAELVQAIRVVAAGEAMLAPSITRRL--LDKYADHLPSGEEPVPDALHTLTDREVEVLKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 169 VARGLSNAEIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 77/223 (34%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +  + E   G +   L      +   +D  +     
Sbjct: 6   RVLVCDDQVLVRTGLVTIIDAQRDLEVVGECGDGQTAVELAGRLRPEVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +              L    F+             + +       +++  G
Sbjct: 66  IEATRLLAGAGVPH------PVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPSQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +  +    +D  LT RE+E L  I+ G ++
Sbjct: 120 IRTVATGAALLDPEVTRQL---VGTYAARIRPAEGP-PRDIPLTPRELEVLRLIANGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS+ TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 176 SEIAATLVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGLV 218


>gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 249

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 31  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 75

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 76  DLLPDIVLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYDAIKA 127

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 128 GATGYLLKEISTDEVSTAIRAVADGQSQISPSMAAKL--LTEFKSMIQRTDERRLVPAPR 185

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245

Query: 246 V 246
           +
Sbjct: 246 L 246


>gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
 gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           172560W]
          Length = 215

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALVKVGETTPDVILMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     +           +    F      +       + Y     +  ++   +
Sbjct: 65  EATAYIKKEYPN--------GKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 218

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           + L +++ L+  +             GA               +D 
Sbjct: 2   PIRVLIADDHALLREGLRQVLHLEPDIEVVGEART-----GAEAVRQAARLRPDIVVMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  +              L   +       +   A   + +     +
Sbjct: 57  NLPDMSGIEATREIRSASASTQ--------VLVLTIHDQEEYLLEAIAAGASGFVLKDVE 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + L       +       +  L   +   +        +   LT RE E L  
Sbjct: 109 PRTLVEAVRLCCRGEGYVHPTLSARVLNLGTRRRERWTPLGGGIPE--PLTRREFEVLQL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG ++ EI   L IS  TV N+I SI RK     R+ A+ +A+R   V
Sbjct: 167 VAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREGWV 216


>gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C]
          Length = 223

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      L  +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEGDLVVVGEAGDGLQALEQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +++           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPDRNG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++             LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYAGHLPSGEQSLPDTLGTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 EREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754]
 gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2]
 gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410]
 gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876]
 gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3]
 gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30]
 gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A9765]
 gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754]
 gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus JKD6159]
 gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus
           O11]
 gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus
           O46]
 gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 207

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +     +              L    +      I+      + Y     +  ++
Sbjct: 61  MNGIE-ITEYIKAHYPDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I                ++F++         +L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNGEKMIHP-----------KAQDVFETVSQKPHYTNKLSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 238

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 72/234 (30%), Gaps = 11/234 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQE 71
              D    S +  +    D    +  L   +     +  +     G     L        
Sbjct: 11  AEADSVEGSALIRVLVVDDHELFLQGLQTVLEIEEDISVVGRAGNGQEALTLASGTSPDI 70

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           +           + R   +   V     +           Y 
Sbjct: 71  VLMDVRMPGRDGIAAAGAIKR--------AVPRTRIVMLTVSDEESDLFEAIKAGAVGYL 122

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +  +     +I      ++  +  +      + D        LT RE+
Sbjct: 123 LKSIPPHEVADAVRAVHNGQSLISPSMASKL--MVEFATMARGTEDRPRAHAPHLTAREL 180

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  ++EG+ + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 181 EVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 234


>gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13]
          Length = 239

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 66/259 (25%), Gaps = 40/259 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +    IV+  + +     V  +         +   D        M               
Sbjct: 1   MDTTKIVIIDDHQLFREGVKRILDFETNFHVVAEGDDGEEALELMEK------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  +              +   +            
Sbjct: 48  --HDPDVIIMDINMPKVNGVEATRRLVEAN--------AEAKVIVLSIHDDENYVTHALQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---------- 174
                Y     D   +   + ++   G  +       +                      
Sbjct: 98  TGARGYLLKEMDADALVDAVKVVADGGSYLHPKVTHNLVREYRRLTENGVRSGVRGGNGG 157

Query: 175 -------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                             LT RE E L  +++GK++  I   L IS  TV N++++I++K
Sbjct: 158 GSTATTYQQIEIRRPLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQK 217

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ A+  A++N  V
Sbjct: 218 MNVNDRTQAVVVAIKNGWV 236


>gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 215

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALVKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+                 +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKE--------YADVKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 14  REDEQRTSFVS-HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQE 71
            EDE R       +    D       L+  ++    +  + E   G+         L   
Sbjct: 23  DEDEPRPRAEPIRVLVVDDHALFRRGLEIVLATEEDIEVVGEAGDGSEAVEKATDLLPDI 82

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +    +          V      +   +     +           Y 
Sbjct: 83  VLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYDAIKAGATGYL 134

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +      I      ++  L+ +++ + ++ +        LT RE+
Sbjct: 135 LKEISTDEVATAIRAVADGQSQISPSMASKL--LSEFKSMIQRTDERRLVPAPRLTDREM 192

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 193 EVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247


>gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
 gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 223

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 48  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPATELVQAIRVVAAGEAMLAPSITRRL--LDKYAGHLPSGEEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 EREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
 gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock1-3]
          Length = 215

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+       E   D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALV----KVGETNPDVVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +     Y  ++    +    F      +       + Y     +  ++   + 
Sbjct: 61  MDGVEATACIKNEYPDVK---VIVLTSFSDQAHVLPALKAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D    +      Q    + + VH      LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIASTLISQTLPQEERAEEHFVHVD---VLTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 175 IASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 223

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 70/230 (30%), Gaps = 13/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P        ++  +  ++            G      VR        +D 
Sbjct: 2   AIRVLLVDDQPLLRTGFRMILEAEGDLAVVGEAGD-----GLQAIDQVRALQPDVVLMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +    KD           L    F      +       + +      
Sbjct: 57  RMPRMDGVEATRQITGPGKDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   + ++     ++       +  L  Y  ++    D        LT REVE L  
Sbjct: 111 AAELVQAIRVVAAGEAMLAPSITRRL--LDKYADHLPSGEDPVPDALHTLTDREVEVLKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 169 VARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 74/237 (31%), Gaps = 25/237 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    ++      +W   +      +G S  L       + Q   + + S++P D  R  
Sbjct: 5   DECVELLSAIDARTWFESLVFSARKLGYSKVLYALKPNKEAQNNAAEIMSNFPDDWRRRY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARI 140
                      +        P+                     AG+ +            
Sbjct: 65  DNENYSIIDPTVFHSFSSSLPIPWEDKLYKTQKEKEFAEEARWAGLSHGMTLPIHGPQGQ 124

Query: 141 RIGLMLLFPKGRIILRD-------RLWEIGLLAAYQ----ANMFKSYDVHWGKDFELTGR 189
              L L      +   +        L    LL  Y      N F+    +      LT R
Sbjct: 125 VGMLSLSC--DPMSEPEYQKTLKNSLGAATLLRDYAVTSSFNHFQQGSGYTAP--HLTPR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L W    KT+ EI  IL +S  TV  +  +I RK    +R  A+A A++ +++
Sbjct: 181 ELEILHWAWAEKTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDLI 237


>gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
 gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1]
 gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1]
 gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719]
 gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192]
 gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58]
          Length = 237

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 14/233 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            R   L  +  +     +   +  +    G   F       F          S++P +  
Sbjct: 4   EREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWK 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVAR 139
                 +      +++     + P+                    G+ + +         
Sbjct: 64  SRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYG 123

Query: 140 IRIGLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +   L L+     I   + L +      I  +         +  +    +  LT RE E 
Sbjct: 124 LISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEM 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT  EI +IL I + TV  +I + MRK  +  ++ A   A    ++
Sbjct: 184 LKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236


>gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796]
 gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315]
 gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A10102]
 gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator
           [Staphylococcus aureus A8117]
 gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus
           aureus 04-02981]
 gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819]
 gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796]
 gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 207

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++   +       +Y  ++         +      I+      + Y     +  ++
Sbjct: 61  MNGIEITEYIKA-----HYPEIKVL---VLTSYVDDEHVISAINKGADGYEMKDVEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I                ++F++         +L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNGEKMIHP-----------KAQDVFETVSQKPHYTNKLSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus
           RF122]
 gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus
           aureus RF122]
          Length = 207

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +     +              L    +      I+      + Y     +  ++
Sbjct: 61  MNGIE-ITVYIKAHYPDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I                ++F++         +L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNGEKMIHP-----------KAQDVFETVSQKPHYTNKLSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 215

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   +S    +  + E   G    + V         +D  +      
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDIELVGEASNGKEALVKVGETNPDVVLMDLYMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +   C+            +    +    F      +       + Y     +  ++   +
Sbjct: 65  EATACIKKE--------YRDVKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              +     +  D    +           +   +       LT RE E L  +++G ++ 
Sbjct: 117 RSAYKGNIQLHPDIANALLSQTLPVEEKEEEPFIQVD---VLTARENEVLQLLAKGMSNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 174 EIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGIV 215


>gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 79/226 (34%), Gaps = 11/226 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS 79
           S  + +    D     + L   +     M  + E   G +   L R        +D  + 
Sbjct: 9   SAPTRVLVCDDQALIRMGLVTIIDAQPDMEVVGECGDGRTGVDLARKLDPDVVVMDIRMP 68

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +A +       V      L    F+             + +        R
Sbjct: 69  VLDGLEATRLLAGAG------VAHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDR 122

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  G+  +     ++  D   ++       A   +  D     D  LT RE+E L  I++
Sbjct: 123 LLHGIRTVAMGAALLDPDVTRQL---VGRYATRIRPTDGAPE-DIPLTPRELEVLRLIAD 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R+ +
Sbjct: 179 GLSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVYAFRHGL 224


>gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
 gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-29]
          Length = 215

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+       E   D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALV----KVGETNPDVVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +     Y  ++    +    F      +       + Y     +  ++   + 
Sbjct: 61  MDGVEATACIKNEYPDVK---VIVLTSFSDQAHVLPALKAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D      L++       ++ +     D  LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIA--SALISQTLPQEERAEEHFVHVDV-LTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 175 IASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|21222167|ref|NP_627946.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256786745|ref|ZP_05525176.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770639|ref|ZP_06530017.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|10432460|emb|CAC10294.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289700838|gb|EFD68267.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 7/224 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           ++    +  + E   GA    L R        +D  +    
Sbjct: 3   TRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +          V  RP  L    F              + +       A +  
Sbjct: 63  GLEAARRL----LSPPPGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++     ++       +  +A +      S      +   LT RE E LT ++ G++
Sbjct: 119 AVRVVASGDALLAPSVTRRL--IADFAQQRPASRGKPALRLKGLTERETEVLTLVARGQS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 177 NTEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 239

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 71/240 (29%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +VL  + +   +    + +  D +  +                              
Sbjct: 20  PLRVVLADDQDLVRAGFRVILSSDDGIEVVGEAGDGWEAVEVATR--------------- 64

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                ++ D ++       L    A                +    F             
Sbjct: 65  -----ERADVVLMDVQMPKLDGLEATRRLLGPAGADHPTKVIILTTFDREDYLFEALRAG 119

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   + ++     ++  +    +    +  A           +  EL
Sbjct: 120 ASGFLLKNASPEDLIESVRIVARGDALLSPEVTRRVIARFSAPA-----VTGPTRRPSEL 174

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L+ +++G ++ EIA  L +   TV  +++ I+ K   + R+ A+ +A  N IV
Sbjct: 175 TDREFEVLSLLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENGIV 234


>gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 225

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 76/243 (31%), Gaps = 26/243 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +NI++  +       + ++    +  A +           +   L              
Sbjct: 2   PINILVADDHALLRQGIKNVLALENDFAVIGEAGDGEETLRKAAELA------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++ + +  S              L   +       +      
Sbjct: 49  --PDVILLDINMPRLNGLEVTKRLRDSHPQI--------KVLILTIHDDDNYVVEVIKAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---D 183
              Y     + + +   +  ++     I       +      +    K           +
Sbjct: 99  AAGYLLKDVEPSMLVAAIRAVYEGESFIYPTLAKRLLDETIRRGEKKKQESAVQPARRGE 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  +++G ++ EIA  L +S  TV N++ +I RK     R+ A+ YA+R+
Sbjct: 159 ERLTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVTDRTQALIYAIRH 218

Query: 244 NIV 246
            IV
Sbjct: 219 KIV 221


>gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 228

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 15/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            + A    +          D     +      + +P    +       
Sbjct: 4   LSRALSFDDVFEIVAAQARALDFEMCAYGARDPLPVTRPTFRTRNTYPDSWQQRYVEGNY 63

Query: 96  DKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                V++       P+                   G+ + +     D    RI +  + 
Sbjct: 64  FARDPVVRYGLIYTSPLVWPVDACADAPFWEEAKAHGVAHGWSQPIRDKHG-RIAMWSVA 122

Query: 149 PKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I    L         +   A    +          +    T RE E L W ++GK
Sbjct: 123 RSADPISDLELAATEGRLIYLAHAAHAVNSRLADAPAAAMQMGPFTTREKEVLKWAADGK 182

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I+
Sbjct: 183 TALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 207

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 17/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +S +    D       L+  +S    +  +    G S        L      D ++    
Sbjct: 1   MSRIILVDDHHIVRQGLEFLLSTVEDLEVIG---GFSDGQTFLDYLENNTLPDIVLLDLV 57

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             ++          K Y  ++         +      I+      + Y     +  ++  
Sbjct: 58  MPEMNGIEITEWMKKKYPNVKIL---VLTSYIDDEHVISAIDKGADGYEMKDVEPEQLIK 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    +II           A +          +  K   L+ RE E LT +++GKT
Sbjct: 115 TIKHVLAGEKIIHPQ--------AQHVIETVSKKPHYANK---LSKRESEVLTEMAKGKT 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  T+  +++ I  K     R+ A  YA++NN++
Sbjct: 164 NKEIAETLFVSEKTIKTHVSHIFSKLQVTDRTQAAIYAMQNNLI 207


>gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 75/239 (31%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      LA +      +    ++ AL               
Sbjct: 3   IRVLLVDDQPLLRTGFRMILEAEQDLAVVGEAGDGLQALDQVRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              E  +D  +      +  R +   E+D           L    F      +       
Sbjct: 48  QPDEVLMDIRMPRMAGVEATRQITGPERDG------PAKVLVLTTFDLDEYVVEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 102 SGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRL--LDKYATHLPSGDEPVPDTLHTLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 160 EREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 218


>gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 240

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEEQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L       R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|300741753|ref|ZP_07071774.1| two-component system response regulator [Rothia dentocariosa M567]
 gi|300380938|gb|EFJ77500.1| two-component system response regulator [Rothia dentocariosa M567]
          Length = 250

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 74/255 (29%), Gaps = 31/255 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+ ++L  + +     +  L      L  ++  D   +       + E           
Sbjct: 12  EQITVMLVDDQQLVRGGLKMLINSQPDLQVVLEADDGAAAVDSYARMAEE---------- 61

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   +D  +      +  + +           +     +    F            
Sbjct: 62  GTAPQVVLMDVRMPIMDGLEAAKSILELN-------VPDSRVIMLTTFDVDEYVYAAVRA 114

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHW 180
             + +         +   +  +     +I       +      +L  +      +     
Sbjct: 115 GASGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSANIAPTS 174

Query: 181 GKDF---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            ++           L+ RE E L  I++G ++ EI+  L +S  T+  +++ ++ K   +
Sbjct: 175 QEEPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLAKLDAR 234

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    IV
Sbjct: 235 DRVQAVIMAYEAGIV 249


>gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa]
          Length = 239

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARI 140
             +   +    +   T+   P+F                    AG+              
Sbjct: 65  DRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGE 124

Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVEC 193
              L L        +    +   L  + +L  Y               K   LT  E E 
Sbjct: 125 LGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSWEKEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 185 LQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 213

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    D +  +           ++  +               
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +              +    F      +       
Sbjct: 47  QPDVVLMDMRMPVMSGLEALQMLSRNGTLP--------PTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens
           DSM 7]
          Length = 214

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 16/217 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    +    +  + E   GA               +D  +      +  
Sbjct: 6   ADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTGPDIILMDLSMPDMDGIEAA 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A         V+          +      I         Y         +   L  +
Sbjct: 66  N-IAAERFPDISIVV-------LTSYSDREHVIPALKAGAKAYQLKDAQPDDLVKTLREV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +  D       +  +  N     D +  K ++LT RE + L  I++GK++ EIA
Sbjct: 118 YSGRYRLSAD-------IVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEIAKGKSNKEIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV  ++++++ K     R+ A  YAV+ N
Sbjct: 171 ASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYN 207


>gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 603

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 14/237 (5%)

Query: 14  REDEQRTSFVSHLPTR---SDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLF 69
           R    R   V+         D           +     M A+ E   G +   L      
Sbjct: 376 RAHPHRERVVTAPIRVLVCDDQALIRTGFTTIIDAQPDMAAVGECGDGRAAVDLAGRLRP 435

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      +  R +A +       V      L    F+             + 
Sbjct: 436 DLVVMDVRMPVLDGIEATRLLAGAG------VAHPVKVLVVTTFNLDEYVYEALRAGASG 489

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +       A++  G+  +     ++  +   ++       A   +  +     D  LT R
Sbjct: 490 FLLKDAPPAQLLHGIRTVASGAALLAPEVTRQL---VGRYAARIRPAEG-TPADVGLTPR 545

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I++G ++ EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R  +V
Sbjct: 546 ELEVLRLIADGLSNSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 602


>gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis]
 gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis]
          Length = 237

 Score =  136 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                      +   A    +G  H            K   ++ S++P   V        
Sbjct: 12  FATAKSEADVFLEFSADVRALGFDHCSFGLRIPLPISKPQFMLQSNYPQTWVERYVSQNY 71

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+                    G+ + +C  +         + ++
Sbjct: 72  FAVDPTVRHGLSRMSPLIWRADSQTQCVQFWEEADQHGLRHGWCMPSVSRTGAIGLITMV 131

Query: 148 FPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I  R+   +      +   A Y  +M     +      ELT RE E L W + GK
Sbjct: 132 RSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYTVELTVREREALQWSAAGK 191

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI  I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 192 TYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236


>gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAKAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L       R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 248

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 14/221 (6%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
             T      + A    +G  H            +   ++ +++P         +      
Sbjct: 27  ASTSDVFEHIEAAALALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRARYLEAGYLHVD 86

Query: 100 NVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             + +      P+  +           +     G+   +   + D   +   L L     
Sbjct: 87  PSVAQACRSQAPIVWSDRLFQDVPALWDEAKAHGLRVGWAQSSLDSLGVGGMLSLSRSCE 146

Query: 152 RIILRDRL---WEIGLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  R+       +  LA       +     DV    D  LT REVE + W ++GK++ +
Sbjct: 147 PLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNREVEVMKWTADGKSAQD 206

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA IL IS+NTV+ ++ + ++K     ++ A+  A     +
Sbjct: 207 IADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 247


>gi|291442172|ref|ZP_06581562.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345067|gb|EFE72023.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 75/224 (33%), Gaps = 7/224 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           ++    +  + E   GA    L R        +D  +    
Sbjct: 3   TRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVWMPEMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +     +    V  RP  L    F              + +       A +  
Sbjct: 63  GLEAARRL----LEPAPGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKNAPPADLIA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++     ++       +  +A +             +   LT RE E LT ++ G++
Sbjct: 119 AVRVVASGDALLAPSVTRRL--IADFAKQRPAVRGKPALRLKGLTERETEVLTLVARGQS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 177 NGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 63/222 (28%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G     LV         +D ++     
Sbjct: 20  RVLLVDDHPLLRHGLRALLEQVGGAEVVGEAGDGEEAIALVLSLNPDVVVMDLVMPGVTG 79

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +     D           L   +                 Y     D       
Sbjct: 80  IEATRTLIDRRPD--------LGVLVLTMSEDDASVFAALRAGARGYVLKGADGNDFIAA 131

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +        I          F +     G   ELT RE E L  ++ GK++
Sbjct: 132 VRAVARGEAVYGPAVARRI--------RRFLTTGPESGPFPELTQREREILDLLASGKSN 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S+ TV N++ SI  K     R+ A+  A R  +
Sbjct: 184 AEIARRLFLSQKTVKNHLTSIFAKLQVADRTQAVVRARRAGL 225


>gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 214

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    D +  +           ++  +               
Sbjct: 3   IRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQI--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +              +    F      +       
Sbjct: 48  QPDVVLMDMRMPVMSGLEALQMLSRNGTLP--------PTIILTTFDDDQLVLAGLKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 100 KGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 156 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214


>gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 241

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + +++  +       +  +      +  +                    GA   L  
Sbjct: 21  AEPIRVLVVDDHALFRRGLEIVLAEEQDIRVIGEAGD---------------GAEAVLKA 65

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +    +          V+     +   +     +      
Sbjct: 66  ADLLPDIILMDVRMPRRSGIEACTAIKD--------VVPSAKIIMLTISDEEADLYEAIK 117

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      I      ++           +S D       
Sbjct: 118 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMAAKLLTEFKSMIQR-RSDDRELLPAP 176

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G  + EIA  L IS NTV N++ +I+ K    +R  A+ YA+R  
Sbjct: 177 RLTDRELEVLKLVATGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREK 236

Query: 245 IV 246
           I+
Sbjct: 237 IL 238


>gi|298244102|ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551583|gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 216

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 27/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ I+L  +     + +  +      +  +               L              
Sbjct: 2   KIRILLADDHTILRAGLKMMLNAQPDMEVVGEAQDGKQAIQETQRL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 + D ++      DL    A  +  K    ++        +              
Sbjct: 48  ------QPDIVLMDITMPDLNGIEATKQIKKIAPDVKIL---VLTMHEHDEYVFQALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   L ++      +      +  ++  Y                 L
Sbjct: 99  ASGYMLKEAADTELITALHVILSGQFYLSPAA--QSVMVGDYLQR--SKTGEEKDSYSSL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++EG T+++IA  L IS  TV+ +   IM K    +R+  + YA+R  ++
Sbjct: 155 TEREREILKLVAEGFTNNQIAERLVISPKTVDTHRTHIMDKLNLHSRAELVKYAMRRGLL 214


>gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 207

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHHIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +     +              L    +      I+      + Y     +  ++
Sbjct: 61  MNGIE-ITEYIKAHYPDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I                ++F++         +L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNGEKMIHP-----------KAQDVFETVSQKPHYTNKLSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|147677779|ref|YP_001211994.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146273876|dbj|BAF59625.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 217

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  +       +  + +    +  +   +                G     L 
Sbjct: 1   MKKIRVLIADDHALVREGLCKILSMEKSIEVVGEAEN---------------GEQAIKLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     +D  +      +  R +           L     +   +            
Sbjct: 46  LKIIPDIILMDINMPKTKGIEATRIIKSR--------LPEVGIIALTIHDQEEYLFELIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   ++ +      I      ++      +     +    +    
Sbjct: 98  AGISGYVLKDISPDLLIQTILGVTRGESFIPPSMTAKV----FAEFTRLSTISSRYSHPL 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REV+ L  +++G ++  IA  L IS  TV N++ SI +K     R+ A  +AV+N 
Sbjct: 154 GLTRREVDVLRLVAQGDSNRSIAQKLFISEKTVKNHLTSIFQKLGVDDRTQAALHAVKNK 213

Query: 245 IV 246
           I+
Sbjct: 214 II 215


>gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 213

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    D +  +           ++  +               
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +           P  +    F      +       
Sbjct: 47  QPDVVLMDMRMPVMSGLEALQMLSRNG--------ALPPTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia
           intestinalis L1-82]
 gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis M50/1]
          Length = 213

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +       +  L         +      V    ++  +               
Sbjct: 3   VKVMIADDHSMIREGLKQLLELEGDFEVIAEACDGVDCLEKLKTVV-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    ++++ M   +      VL         V + +   +       
Sbjct: 49  -PDILLLDINMPNMNGLEVLQKMKDMKMKVKVLVL--------TVHNEVEYLLKAVDIGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y     + A ++  ++ +      I    +  +        +     D    K   LT
Sbjct: 100 NGYLLKDSESAELKKAILAVVNGEDYIQPSLIPVL-------NSKMLDRDSDSSKIESLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +S G  + EIA  L IS  TV N++++I +K     R+ A  +A+RNN++
Sbjct: 153 RRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQAAVFAIRNNLI 211


>gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 220

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQALIRTGFATIIDAQPDLEVVGECGDGRTAVELAGRVHPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A +       V      L    F+             + +       A++  G
Sbjct: 66  IGASRLLAGAG------VANPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +  +   G D  LT RE+E L  I++G ++
Sbjct: 120 IRTVATGAALLAPEVTRQL---VGRYAARIRPAEGSSG-DIPLTPRELEVLRLIADGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R+ +V
Sbjct: 176 SEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218


>gi|307302498|ref|ZP_07582255.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307316172|ref|ZP_07595616.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|86278997|gb|ABC88593.1| N-acyl homoserine lactone receptor [Sinorhizobium meliloti]
 gi|306898012|gb|EFN28754.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306903168|gb|EFN33758.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 24/238 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            LA +  +            L +  G   + +VR     E  L  +++  WP    +   
Sbjct: 9   FLALLEEMKTREEILPEFERLLDRCGFDFYGIVRQPKPHENPLRLLLAGRWPEGWPQIYI 68

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------------PENITPPAGMDNRYCSLTF 135
             +       ++                                     G+ + Y     
Sbjct: 69  RKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPVH 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTG 188
               +   L  +  +   +    L     +A                       + ++T 
Sbjct: 129 GRRGLMGNL-TVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTR 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R   +A A R  ++
Sbjct: 188 REMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 245


>gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 267

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +    + +  +                    GA       
Sbjct: 49  EPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGD---------------GAEAVEKAA 93

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 94  DLLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 145

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 146 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 203

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 204 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 263

Query: 246 V 246
           +
Sbjct: 264 L 264


>gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 253

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +      +A +      +    ++ AL               
Sbjct: 32  IRVLLVDDQPLLRTGFRMILEAEQDIAVVGEAGDGLQALDQVRAL--------------- 76

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +    +D           L    F      +       
Sbjct: 77  QPDVVLMDIRMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGA 130

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  L  Y  ++    +        LT
Sbjct: 131 SGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRRL--LDKYAGHLPSGEEPVPDTLNSLT 188

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 189 DREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESGLV 247


>gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 215

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+      QE + D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALV----KVQEVQPDIVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +   K Y  ++         F      +       + Y     +  ++   + 
Sbjct: 61  MDGIEATACIKKEYPNVKVL---VLTSFSDQAHVLPALKAGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D      LL+       K    +   D  LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIA--SALLSQTLPQAEKQESSNIHVDV-LTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N +V
Sbjct: 175 IASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGVV 215


>gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13]
          Length = 210

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 16/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L          +D ++     
Sbjct: 3   RIVIADDHHVVRRGLLFFLKTQKDIEIVGEAKNGKEAVELAEALKPDVILMDLVMPEMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + +                 L    F      I         Y     +  ++   
Sbjct: 63  IEATKQIVERNIP--------SKVLILTSFADQDHVIPAIRAGATGYQLKDVEPDQLIES 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +            ++  + F           ELT RE+E L  I++GK++
Sbjct: 115 IRAVHRGESQLHPKVT-------SHVMSHFTKGFGSTNLHEELTKRELEVLAEIAKGKSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L I+  TV  ++++I+ K     R+ A  YAV++ I
Sbjct: 168 KEIASSLFITEKTVKTHVSNILAKLEVADRTQAALYAVKHGI 209


>gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074]
 gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 13/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P        ++  +  V+            G      VR        +D 
Sbjct: 2   AIRVLLVDDQPLLRTGFRMILEAEQDVAVVGEAGD-----GLQALDQVRALQPDVVLMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +   E+D           L    F      +       + +      
Sbjct: 57  RMPRMDGVEATRQITGPERDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++       +  L  Y  ++    +        LT REVE L  
Sbjct: 111 AHELVQAIRVVASGEAMLAPSVTRRL--LDKYAEHLPSGDEPVPDTLHTLTDREVEVLKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 169 VARGLSNAEIAADLFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESGLV 218


>gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168]
 gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168]
          Length = 240

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 71/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +    + +   ++ L         +      + +P   V 
Sbjct: 10  RRSMLLRFQEMASAKDVYSELQRQAQLLEFDYYALYVRHPVPFTRPRISFQTSYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQR--PTELFCPVFHTLP------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+     +   P    L        +     G+            R 
Sbjct: 70  RYQAENYSAIDPVLKPENFIQGHLPWSDDLFNDAQTLWDAARAHGLRKGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPK---GRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L ++        I   +    + LL           +       +   + RE E L 
Sbjct: 130 LGFLSVVRASLRSNPIDDDEVELRLQLLVRESLAALSRLEDEMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGLI 240


>gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 261

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 10/228 (4%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
           TS    +    D           +S    +  + E   G   +        Q   +D  +
Sbjct: 39  TSETVDVLIVDDQDLVRNGFKLILSSYDHVRVVGEASNGIEAYEQSLALRPQVVLMDIRM 98

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +      R +           L +   L    F              + +     +  
Sbjct: 99  PVEDGIAATRKIVG------DTALAQTRVLVLTTFDIDEYVYDALQAGASGFMLKDAEPD 152

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +     +I       +  +  + ++  ++     G   +LT RE E L +++
Sbjct: 153 DIVRAVRTVAAGDALIQPSITRRL--IETFVSSRPRT-SAAAGGLVDLTDREREILRFVA 209

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +++EIA  L IS  TV  ++A IM K     R+  +  A  + +V
Sbjct: 210 RGMSNEEIADDLVISPATVKTHLARIMGKLDAHDRAQLVVAAYESGLV 257


>gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580]
 gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis
           ATCC 14580]
 gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580]
          Length = 217

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 73/221 (33%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L            + E   G     ++R        +D  +      
Sbjct: 6   IIIADDHHIVRKGLLFFFKTKSDFDVIGEASTGIEALDVLRKREADIVLMDLSMPDMDGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +        Y  ++    +    +      I         Y     +   +   +
Sbjct: 66  EATKRIKKE-----YPSVK---VIALTSYADESYVIPAIQAGACAYQLKDAEPDELVETI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++     +  +       + ++  +     D    K  +LT RE + L  I++GK++ 
Sbjct: 118 RAVYGGRYSLDPN-------IMSHVFHHVSQADEK-EKIHQLTNREKDVLLEITKGKSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L IS  TV  ++++++ K     R+ A  +AV++ +
Sbjct: 170 EIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHGL 210


>gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 214

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    D +  +           ++  +               
Sbjct: 3   IRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQI--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +           P  +    F      +       
Sbjct: 48  QPDVVLMDMRMPVMSGLEALQMLSRNG--------ALPPTIILTTFDDDQLVLAGLKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 100 KGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 156 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214


>gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 240

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L       R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 202

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 12/209 (5%)

Query: 39  LDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
           +   +     +  + E   G                LD  +  +   +    +       
Sbjct: 1   MQAVIGLEPDLEIVAEASSGGEAVEKCFEFDPDVVLLDVRMPGNSGIEACTAIKEKA--- 57

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
                 R   L         +         + Y        +I   + +      +I   
Sbjct: 58  -----PRTKILILTASDDESDLFAAIKAGASGYLLKDLPTEQIAESVRMAHTGQSMIPPH 112

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
              ++    +  +N          +   LT RE+E L  ++ GK + EIA  L IS NTV
Sbjct: 113 MASQLIAEFSRLSNEPPKEATAGPR---LTERELEVLGLVARGKANKEIATQLFISENTV 169

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            N++ +I+ K    +R  A  YA+R N++
Sbjct: 170 KNHVRNILEKLQLHSRVEAALYAMRRNLI 198


>gi|297194566|ref|ZP_06911964.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152332|gb|EDY66387.2| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +S    +  + E   G     + R        +D  +     
Sbjct: 4   RVIIVDDQAMVRAGFAALLSAQSDIDVVGEAPDGRKGVEVSRTTHPDVVLMDVRMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +     +    V+ RP  L    F              + +       A +   
Sbjct: 64  LAAAREL----LNPPTAVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A + A           +   LT RE E L  I+ G ++
Sbjct: 120 VRIVAAGEALLAPSVTRRL--IADFAAQRPAPRRDPSLRLNGLTPRETEVLELIARGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 178 QEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 220


>gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 251

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    G+       
Sbjct: 33  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVIGEAGD---------------GSEAVDKAA 77

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 78  DLLPDIVLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYEAIKA 129

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 130 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 187

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 188 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 247

Query: 246 V 246
           +
Sbjct: 248 L 248


>gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 207

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +     +              L    +      I+      + Y     +  ++
Sbjct: 61  MNGIE-ITEYIKAHYPDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I         L A            +  K   L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNGEKMI--------HLKAQDVFETVSQKPHYTNK---LSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
 gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 228

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 15/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            + A    +          D     +      + +P    +       
Sbjct: 4   LSRALSFDDVFEIVAAQARALDFEMCAYGARDPLPVTRPTFRTRNTYPESWQQRYIEGNY 63

Query: 96  DKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                V++       P+                   G+ + +     D    RI +  + 
Sbjct: 64  FARDPVVRYGLIYTSPLVWPVDACADESFWEEAKAHGVAHGWSQPIRDKHG-RIAMWSVA 122

Query: 149 PKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I    L         +   A    +          +    T RE E L W ++GK
Sbjct: 123 RSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREKEVLKWAADGK 182

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I+
Sbjct: 183 TALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X561]
 gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter sp. X513]
 gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 205

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 21/218 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +     +  +++   G   + L +  +     +D  +       
Sbjct: 2   LVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNGIK 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             + +   +             LF  +++     +         Y     +   +   + 
Sbjct: 62  AAKMLKEEKHP--------SKVLFLTIYNDREYLLEALKLGVEGYILKDAEYDDLIKAIK 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++  G  I    + EI  +                   +LT RE+E L  IS+G ++ E
Sbjct: 114 TIYNGGVYIHPSLMEEIDNIDQETLKK------------DLTPREIEILKLISKGYSNKE 161

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  L +S  TV N++ +I +K   K R+ A  Y ++N
Sbjct: 162 IAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKN 199


>gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R D+L +   +         +   TE +   ++ L         +      S +P   + 
Sbjct: 10  RRDMLHQFQSVAAGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMS 69

Query: 89  CMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDN------RYCSLTFDVARI 140
                       VL+         P    L  +                           
Sbjct: 70  HYQAENYFAIDPVLRPENFMRGHLPWEDGLFRDAAALWEGARDHGLKKGVTQCLTLPNHA 129

Query: 141 RIGLMLLFPK---GRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
           +  L +       G     +    + +L             ++    + + + RE+E L 
Sbjct: 130 QGFLSVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 190 WTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 228

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 15/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            + A    +          D     +      + +P    +       
Sbjct: 4   LSRALSFDDVFEIVAAQARALDFEMCAYGARDPLPVTRPTFRTRNTYPESWQQRYLEGNY 63

Query: 96  DKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                V++       P+                   G+ + +     D    RI +  + 
Sbjct: 64  FARDPVVRYGLIYTSPLVWPVDACADEPFWEEAKAHGVAHGWSQPIRDKHG-RIAMWSVA 122

Query: 149 PKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I    L         +   A    +          +    T RE E L W ++GK
Sbjct: 123 RSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTTREKEVLKWAADGK 182

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA IL IS  T+  ++ +IM K  +  ++ AI  AV   I+
Sbjct: 183 TALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227


>gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
              L       R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
 gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae
           bacterium Broad-1]
          Length = 212

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 27/236 (11%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  + E     +  L      +  +      +  T R                      
Sbjct: 1   MVVDDQELFRRGLVALLASEPGIEVIGEATNGIEGTER---------------AAASAPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      +    +           +     +   V     +           Y
Sbjct: 46  VVLLDVRMPKQTGLEACSAIKE--------AVPSAKIIMLTVSDEEADLYDAIKAGAMGY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                 + ++   + ++     +I      ++      +       D       +LT RE
Sbjct: 98  LLKDSSIDQVAQAIRVVADGQSLISPSMAAKL----MEEFKQMARPDRSPVPGPKLTDRE 153

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  ++
Sbjct: 154 LEVLGLVAKGLNNREIAKRLFISENTVKNHVRNILEKLQAHSRMEAVMYAVRQKLL 209


>gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
 gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14]
          Length = 267

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +R +  R   V         L  ++  +  +          E V  +  LL         
Sbjct: 46  SRAEPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGDGAEAVDKAADLL-----PDIV 100

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +    +          V      +   +     +           Y  
Sbjct: 101 LMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKAGATGYLL 152

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +      I      ++  L  +++ + ++ +        LT RE+E
Sbjct: 153 KEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPRLTDRELE 210

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 211 VLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264


>gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 18/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
              +        M  LT+ +G + FL++        ++ +  + ++WP ++V        
Sbjct: 15  AGFNTHYEVFKYMKGLTQDLGMTAFLIMTLPTVDFAEIGATKIITNWPAEMVDYYDAHNL 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDVARIR 141
                V++R      P  + +                 +    GM+        D A  R
Sbjct: 75  MVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIELFNRYGMEKGAYFPVHDAAGGR 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEG 200
             + +   +   +    + ++  +A    +           K  E T  E++CL   + G
Sbjct: 135 GAMSISGSRNFSM--IEMAKLLFIATLIYDRLSQLTLNEKHKPIEFTRNELDCLRLTAGG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   EIA +L ++ N VNN+I S ++K    TR+ A+  A+R NI+
Sbjct: 193 RKGAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSALRLNIL 238


>gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 216

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  + E     +       + +  +                    G     L 
Sbjct: 1   MDKIKVMIVDDHEMVRLGMKTYLLTEERIEFLGEASS---------------GNEAVKLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D ++ +    +  + +           L     +    ++   +      
Sbjct: 46  KLYQPQIILMDLLMENGNGIEATQEILT--------FLPDCKIIILTSYYDDEKVFPAIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   T     +   +        +I           A    N F+  +    +D 
Sbjct: 98  AGAHSYLLKTASADEVVSAVYKAVKGESVIAPKV-------ADKMMNRFRPQERKLHED- 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  + EG T+ EI+  L I   T   ++++I+ K     R+ A  YA RN 
Sbjct: 150 -LTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNILSKLGVADRTQAAIYANRNG 208

Query: 245 IV 246
           I+
Sbjct: 209 IL 210


>gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
 gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342]
 gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55]
          Length = 240

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R D+L +   +         +   TE +   ++ L         +      S +P   + 
Sbjct: 10  RRDMLHQFQSVAAGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMS 69

Query: 89  CMALSEKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMDN------RYCSLTFDVARI 140
                       VL+         P    L  +                           
Sbjct: 70  HYQAENYFAIDPVLRPENFMRGHLPWEDGLFRDAAALWDGARDHGLKKGVTQCLTLPNHA 129

Query: 141 RIGLMLLFPK---GRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
           +  L +       G     +    + +L             ++    + + + RE+E L 
Sbjct: 130 QGFLSVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 190 WTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 242

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  + E     +  +      +  +           R   L            
Sbjct: 9   VESIKVLVVDDHEFFRRGLVSVLAEEPDIEVVGEAGDGEEAVARAKEL------------ 56

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +           +           +     +   +     +      
Sbjct: 57  ---RPDVVLLDVRMPKRSGIAACAGIKE--------AVPDAKIVMLTMSDEEEDLFEAIK 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y      V  +   +  +      I      ++    A  A   K       K  
Sbjct: 106 AGATGYLLKEISVVELPEAVRAVCKGQSFINPSMATKLINEFAALARKGKDRRSQPTKPP 165

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R+ A  YA+R  
Sbjct: 166 RLTERETEVLRLVARGLNNRDIADRLYISDNTVKNHVRNILEKLQLHSRTEAAVYAIREK 225

Query: 245 IV 246
            +
Sbjct: 226 FL 227


>gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 213

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    D +  +           ++  +               
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +              +    F      +       
Sbjct: 47  QPDVVLMDMRMPVMSGLEALQMLSRNGTLP--------PTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVSLEQLVGAIRTVAEGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 245

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 25/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++VL  +          +    + +  +                    G S     + 
Sbjct: 26  PISVVLADDQALMRMGFRMVLEAEEDITVVGEASD---------------GTSALAQAKA 70

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +A                L    F             
Sbjct: 71  LHPDVILMDVRMPGMNGIEATELIARE--------CPSTRVLILTTFDLDEYAFAGLRAG 122

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
            + +         +   +  +     ++        + + AA   +             +
Sbjct: 123 ASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPSSDAPAQPSSDPRID 182

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +S+G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    
Sbjct: 183 SLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDVRDRVQAVVVAYETG 242

Query: 245 IV 246
           ++
Sbjct: 243 LM 244


>gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2]
 gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2]
          Length = 216

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 73/221 (33%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L            + E   G     ++R        +D  +      
Sbjct: 6   IIIADDHHIVRKGLLFFFKTKSDFDVIGEASTGIEALDVLRKREADIVLMDLSMPDMDGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +        Y  ++    +    +      I         Y     +   +   +
Sbjct: 66  EATKRIKKE-----YPSVK---VIALTSYADESYVIPAIQAGACAYQLKDAEPDELVETI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++     +  +       + ++  +     D    K  +LT RE + L  I++GK++ 
Sbjct: 118 RAVYGGRYSLDPN-------IMSHVFHHVSQADEK-EKIHQLTNREKDVLLEITKGKSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L IS  TV  ++++++ K     R+ A  +AV++ +
Sbjct: 170 EIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHGL 210


>gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 238

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 15/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMALSE 94
           +        W   +  + +    S+  L++    +    L  +V S  P  +V  M    
Sbjct: 14  LSAAIDRPQWLAALQQVMQAFSYSYVTLLKLPSIRNAYALPIVVESSLPVWVVNAMTRDG 73

Query: 95  KDKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDVARIRI 142
           +     V++R      P + +L +             +    G+ +        +   R 
Sbjct: 74  ELADCPVIKRGASSMMPQYWSLDDKDINCGSLLEVSTLLRGMGITSGLLVPVNGMDGNRH 133

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGK 201
            +        ++ +  L E+ ++A +    +        K    LT RE++ + W ++GK
Sbjct: 134 LMNFAG-DCDVLSQGSLNELCMIALHALEAYDRLCRAGSKLPSPLTKRELDVVRWTAQGK 192

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS EIA +L IS +TVN Y+ + +RK     R+  +A  +R  ++
Sbjct: 193 TSVEIAELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGLI 237


>gi|126347864|emb|CAJ89584.1| putative two component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 224

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 76/224 (33%), Gaps = 7/224 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           ++    +  + E   GA    L R        +D  +    
Sbjct: 3   TRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAKGVELSRRTRPDVVLMDVRMPEMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +     D    V  RP  L    F              + +       A +  
Sbjct: 63  GLEAARRL----LDPPAGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++     ++       +  +A +      +      +   LT RE E LT ++ G++
Sbjct: 119 AVRVVASGDALLAPSVTRRL--IADFAKQRPTTRGRPALRLKGLTERETEVLTLVARGQS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 177 NTEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 248

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 80/261 (30%), Gaps = 33/261 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +A                      GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMAVAAQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +     + R   +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRQISSLQHRFAADGTQSEVARTKVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +       + +     +   +   +  +F    II       +         M  +   H
Sbjct: 108 MAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGAH 167

Query: 180 WGKDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                              ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+
Sbjct: 168 GNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHIL 227

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ +A  N++V
Sbjct: 228 AKINARDRVQAVVFAYENHLV 248


>gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer
           synthesis transcription regulator protein [Ralstonia
           solanacearum GMI1000]
          Length = 238

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 14/221 (6%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
             T      + A    +G  H            +   ++ +++P         +      
Sbjct: 17  ASTSDVFEHIEAAALALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRARYLEAGYLHVD 76

Query: 100 NVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             + +      P+  +           +     G+   +   + D   +   L L     
Sbjct: 77  PSVAQACRSQAPIVWSDRLFQDVPALWDEAKAHGLRVGWAQSSLDSLGVGGMLSLSRSCE 136

Query: 152 RIILRDRL---WEIGLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  R+       +  LA       +     DV    D  LT REVE + W ++GK++ +
Sbjct: 137 PLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNREVEVMKWTADGKSAQD 196

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA IL IS+NTV+ ++ + ++K     ++ A+  A     +
Sbjct: 197 IADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 237


>gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 241

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 72/252 (28%), Gaps = 35/252 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V ++L  + +     +  +    D +  +      +                   L   
Sbjct: 11  RVKLILADDHQLFREGLKRIINMEDDMEVVGECGDGIQVIE---------------LCNE 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +  +        + L        +      +   +              
Sbjct: 56  IQPDVVLMDINMPLENGVVATERLKL--------IFPDIKIIILSIHDDESYVFETLRKG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------------GLLAAYQANMFK 174
            + Y     +   +   +  +      I      ++              +A        
Sbjct: 108 ASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVAGGNPAHDS 167

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +          LT RE E L  ++EG+++  I   L IS  TV N+++SI++K     R+
Sbjct: 168 ALRYIDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRT 227

Query: 235 GAIAYAVRNNIV 246
            A+  A++N  V
Sbjct: 228 QAVIIAIKNGWV 239


>gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 240

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDMLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L       R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 226

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 70/225 (31%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M  +     +   +  +    G   F       F          S++P +        + 
Sbjct: 1   MSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDY 60

Query: 96  DKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                +++     + P+                    G+ + +         +   L L+
Sbjct: 61  TSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLV 120

Query: 148 FPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                I   + L +      I  +         +  +    +  LT RE E L W + GK
Sbjct: 121 RSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGK 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI +IL I + TV  +I + MRK  +  ++ A   A    ++
Sbjct: 181 TYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 225


>gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 243

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       +  +    + +  +                    GA      
Sbjct: 24  VEPIRVLVVDDHALFRRGLEIVLEAEEDIEVIGEAGD---------------GAEAVEKA 68

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +    +          V      +   +     +      
Sbjct: 69  ADLLPDIVLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYEAIK 120

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      I      ++  L  +++ + ++ +       
Sbjct: 121 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAP 178

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  
Sbjct: 179 RLTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREK 238

Query: 245 IV 246
           I+
Sbjct: 239 IL 240


>gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2]
 gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1]
          Length = 223

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
            W+  +  +   +G S  L        +   ++ +  ++P         +   +    + 
Sbjct: 2   EWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVS 61

Query: 104 RPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-----F 148
             T+   P+F                    AG+                 L L       
Sbjct: 62  HCTQSVLPIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENR 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEI 206
            +    +   L  + +L  Y               K   LT RE E L W + GKTS EI
Sbjct: 122 AEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEVLQWCAIGKTSWEI 181

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 182 SVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 221


>gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus
           epidermidis VCU121]
          Length = 207

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 17/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  +    D       L+  +S    +  +    G +   L    L   ++ D ++    
Sbjct: 1   MKKIILVDDHHIVRQGLEFLLSTVEDIEVV---QGFAEGKLFLDYLENNEQPDIVLLDLV 57

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D+            Y  ++         +      I+      + Y     +  ++  
Sbjct: 58  MPDMNGIEITEYLKNNYPNIKIL---VLTSYVDDEHVISALEKGADGYEMKDVEPQKLIE 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    RII  D        A +  +   S      K   L+ RE E L  + +GKT
Sbjct: 115 TIHNVLDGKRIIHPD--------AKHVLDSMSSKPHFTNK---LSKRETEVLKEMVKGKT 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 164 NKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 234

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 73/224 (32%), Gaps = 12/224 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
               ++        +  +   +G                  S+  S++P           
Sbjct: 11  EFSRIEKPQHLGATLSRVAAILGYEFVAYGIRRPLPLSNPPSLTVSNYPARWQERYQGLR 70

Query: 95  KDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLML 146
             +   V +       PV  +                 G+ + + S T         L L
Sbjct: 71  LAEIDPVARAANASDRPVVWSSQGNDSDQAFWQEASSFGLMHGWSSATRGAEGTLGVLSL 130

Query: 147 LFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKT 202
                 I   +R      +  LA         +    G  +  LT RE + L W ++GKT
Sbjct: 131 ARGGDAIDEVERDRNEFIVHWLANVAHAALAPFLPAAGEPEANLTSRETDVLKWTADGKT 190

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI+ IL IS +TVN ++ +IM K  T  +  A+A A    ++
Sbjct: 191 AYEISRILSISESTVNFHVKNIMSKLGTSNKIQAVAKAALTGML 234


>gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
 gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4]
          Length = 307

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 24/243 (9%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF----QEQKLDSIVSSDWP 83
                + R+            M +  + +G  +F              +   +   +++P
Sbjct: 44  PLDRFIMRLNAAVSAAEMKAVMESSIKSLGYKYFSYHILQTPVLNATNETRHTFGINNYP 103

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRY 130
            + V   A         ++        P   +   +                  G+ N  
Sbjct: 104 EEWVERYASERYVYCDPIVGISLSRKTPFRWSDAIDSDKLTEEERCVIEDAAKRGIVNGL 163

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKD 183
                        + ++  +           I +++ +  +              +  + 
Sbjct: 164 TVPLMSRHGELAIMTVIPDEKFQDSLPEAHLIHIISQFFHSCALPVVMEEHLIGSYRRRR 223

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E + W+S+GK+S EIA ILGIS  +V  Y+ S+ RK     R+ A+  A+  
Sbjct: 224 SFLSAREKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKAIML 283

Query: 244 NIV 246
            ++
Sbjct: 284 GLI 286


>gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 213

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    + +  +           ++  +               
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDNGIEVVAEASDGKQAVEQIPQI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +              +    F      +       
Sbjct: 47  QPDVVLMDMRMPVMSGLEALQMLSRNGTLP--------PTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVSLEQLVGAIRTVAGGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family
           [Thiomonas sp. 3As]
          Length = 237

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 16/229 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +  + C       + ++   +G  H            +   ++ +++P         
Sbjct: 9   LHALQTITCDAQLFEIVVSMVHSLGFDHCSYGLRMPLPVSRPKVVLLTNYPRAWENRYTE 68

Query: 93  SEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                    ++  T    PV                    G+   +   + DV      L
Sbjct: 69  KGYLAVDPTVRHGTHSLQPVVWSDAFFASSRDLWEEARSFGLCVGWAQSSRDVNSTMGLL 128

Query: 145 MLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   G  I    L +       +  +     +   +  +       LT RE+E L W 
Sbjct: 129 S-VSRSGEPISEIELRDKEMQLAWLTQMVHLGMSRILTAKLMPAVTAPLTDREIEVLRWT 187

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++GKT+ EIA IL IS  T N +IA+ + K     ++ A+  A    ++
Sbjct: 188 ADGKTASEIADILNISERTANFHIANAIAKLHAPNKTAAVIRAGMLGML 236


>gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 213

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + L  +       +  L    D +  +           ++  +               
Sbjct: 2   TRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +           P  +    F      +       
Sbjct: 47  QPDVVLMDMRMPVMSGLEALQMLSRNG--------ALPPTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|227823797|ref|YP_002827770.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
 gi|227342799|gb|ACP27017.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 24/238 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            LA +  +            L +  G   + +VR     E  L  +++  WP    +   
Sbjct: 9   FLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPESWPQIYI 68

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------------PENITPPAGMDNRYCSLTF 135
             +       ++                                     G+ +       
Sbjct: 69  RKKYVVIDPTIRYLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGDIFPVH 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTG 188
               +   L  +  +   +    L     +A                       + ++T 
Sbjct: 129 GRRGLMGNL-TVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTR 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R  A+A A R  ++
Sbjct: 188 REMEALNYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHAVAIAFRLGLI 245


>gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 81/224 (36%), Gaps = 17/224 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVRCMALSEKDK 97
           ++        +  ++E  G   F+++         L +  + + WP D +R    +    
Sbjct: 23  IENEDDVRGALGRVSEGFGFRGFMVLAIPDSGSHSLTAQALMTTWPMDFLRRYDSARLID 82

Query: 98  YYNVLQRPTELFCPVFHTLPENITPP--------------AGMDNRYCSLTFDVARIRIG 143
              V+QR      P  +   +                   A M         D A  R  
Sbjct: 83  GSPVIQRLRRSTIPFTYDAHQLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHRAA 142

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +         +  D L E+ L A    +          +    L+ RE+ECL W + GKT
Sbjct: 143 VAF-GGDRSAVSGDELQELNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGKT 201

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  ++
Sbjct: 202 TVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245


>gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 218

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           + L +++ L+  +             GA               +D 
Sbjct: 2   PIRVLIADDHALLREGLRQVLHLEPDIEVVGEARN-----GAEAVRHAARLRPDLVVMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  +              L   +       +   A   + +     +
Sbjct: 57  NLPDMSGIEATRQIRAASASTQ--------VLVLTIHDQEEYLLEAIAAGASGFVLKDVE 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + L       +       +  L   +   +        +   LT RE E L  
Sbjct: 109 PRTLVEAVRLCCRGEGYVHPTLSARVLNLGTRRRERWTPLGGGIPE--PLTRREFEVLQL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG ++ EI   L IS  TV N+I SI RK     R+ A+ +A+R   V
Sbjct: 167 VAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREGWV 216


>gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae]
          Length = 234

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 72/231 (31%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++ ++      +W   +  L    G S  +L        +  D+ + +++     +    
Sbjct: 1   MSPVLDAPEEAAWFDAVTKLASSWGFSQLMLAILPRPGMRLEDAFIRTNYSAAWRQTYND 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRI 142
                +   +   T    P+  +                   G+            +   
Sbjct: 61  HGMAYFDPTVTHCTTRSSPLIWSPELFATEQQQSMYEEARAYGLRAGITLPIHGPRQEVG 120

Query: 143 GLMLL--FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLT 195
            L  +           D    +  L   +  +  +   H     +     LT RE ECL 
Sbjct: 121 MLCFVNDASPSDGFWDDVNRALPNLVLLRDLVLDTSHRHLTDHVQSLIPKLTPREKECLK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK++ EI+ IL  S   VN ++ +I  K    +R  A   A +  ++
Sbjct: 181 WTALGKSTWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVIATQMGLI 231


>gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 16/223 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     L   +     +  + E   G     L R        +D ++      
Sbjct: 3   VLIVDDHILVRDGLRSLLE-ARGIEVVGEATNGEEAVELARELKPDIVLMDLMMPKMDGI 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + ++          L     +         +         + Y     D  R    L
Sbjct: 62  EATKLISAE--------LPEIKVVVLTASEEEEDLFEAIRSGASGYIIKNIDPDRFFELL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT-S 203
              +     +  +   ++    A         +     D ELT RE E L  + +G T +
Sbjct: 114 EAAYQGEPALPPNLARKVLQEFAQP-----KIERKKRPDAELTDREREILELLVQGITSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  ++ +I+ K   + R+  +AYA+++ ++
Sbjct: 169 KEIAERLFLSESTVKYHLHNILNKLHLQNRAQVVAYALQHGLI 211


>gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 197

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 11/190 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L +        +D  +      +  R +           +     +   +    
Sbjct: 17  GEEAVELTKALKPDVVIMDISLPDMSGIEATRLIKE--------AVPETRVIGLTMHEEE 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  +       + Y       A +   +  +     ++         ++  Y +   ++ 
Sbjct: 69  PFVLEFLRAGADAYIVKRSAAADLVGAIRAVMEGQAVLDPAVTR--AVVEGYVSRPGRAV 126

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E L  I+EG T+ EIA  L IS  TV  + ++++ K     R+  
Sbjct: 127 GQPEEP-CPLTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTEL 185

Query: 237 IAYAVRNNIV 246
           + YA+R  +V
Sbjct: 186 VRYAIRQGLV 195


>gi|300866500|ref|ZP_07111190.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300335457|emb|CBN56350.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 241

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 72/258 (27%), Gaps = 34/258 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + L  + +     +     + D +  +            + +             
Sbjct: 1   MTKIRVALVEDHDLTRVGIRTALQQRDGIEVVGDAANATEGLKLLQS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L +    S         +              E +   A
Sbjct: 48  --SKPDVAIVDIGLPDFDGIELTQKFKKSIATGSDPDTKVL---ILTFQDNEEEVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC       ++   + +       I       +   A  +A           K  
Sbjct: 103 AGADSYCMKDISFDQLLDVVKVTHEGNSWIDPAIARIVLKQARTEAQNPVEEQKVEHKKV 162

Query: 185 E----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT RE+E L  I +G ++  IA  L I+  TV  ++ +I+ K 
Sbjct: 163 TINAAEPEFSHIIETYPLTERELEVLELIVQGYSNAAIAEKLYITVGTVKTHVRNILNKL 222

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A   A+R+ +V
Sbjct: 223 CADDRTQAAVLALRSGLV 240


>gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 31  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 75

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 76  DLLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 127

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 128 GATGYLLKEISTDEVSTAIRAVADGQSQISPSMAAKL--LTEFKSMIQRTDERRLVPAPR 185

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 186 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 245

Query: 246 V 246
           +
Sbjct: 246 L 246


>gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R              A ++      S            GA   +  R        +D 
Sbjct: 4   PIRVLVADDHLVVRTGFAELLGTQPDFSVVGIA-----SDGAEAVMACRTATPDVVLMDV 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            + +    +  R +A + +         P  +    F              + +      
Sbjct: 59  RMPNMDGIEATRRIAATSEAT-------PRVIILTTFDLDEYVYDALRAGASGFLLKDVT 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   + ++     ++       +           +   V   +   LT RE E L  
Sbjct: 112 AERLFDAVRVVAAGEALLAPTVTRRLI---GEFVQSKQPRPVADARLASLTPRETEVLRL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG ++ E+A  L +S  TV  +++ ++ K   + R+ A+  A  + +V
Sbjct: 169 VAEGLSNPELAARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGLV 218


>gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 240

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 18/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
              +        M  LT+ +G + FL +        ++ +  + ++WP ++V        
Sbjct: 15  AGFNTHYEVFKYMKGLTQDLGMNAFLFMTLPTVDNVEIGATKIITNWPAEMVDYYDAHSL 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDVARIR 141
                V++R      P  + +                 +    GM+        D A  R
Sbjct: 75  LIDSPVIRRMLRSTSPFNYDVEAINTNRGEGKKSTVIELFFRYGMEKGAYFPVHDAAGGR 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEG 200
             + +  P+   +    + ++  +A    +           K  E T  E++CL   + G
Sbjct: 135 GAMSISGPRNFSM--IEMAKLLFIATLIYDRLSQLTLNEKHKPIEFTPGELDCLRLTAGG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   EIA +L ++ N VNN+I S ++K    TR+ A+  A+R NI+
Sbjct: 193 RKGSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSALRLNII 238


>gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942]
 gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus atrophaeus 1942]
          Length = 211

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +  +                    G+    L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLEAQADIEVIGEASD---------------GSQGVQLAVQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  +        +   VL  P  +    F    +         
Sbjct: 47  KPDVILMDLVMEGMDGIEATK--------QICGVLDDPKIIVLTSFIDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +         +           A    +  +  +        LT
Sbjct: 99  LSYLLKTSKAGEIADAIRAASKGEPKLESKV-------AGKVLSRLRHSNDSALPHETLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++EGKT+ EI   L I+  TV  ++ +I+ K     R+ A  YA RN +V
Sbjct: 152 KRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNILSKLEVADRTQAAVYAHRNKLV 210


>gi|310287681|ref|YP_003938939.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum
           S17]
 gi|309251617|gb|ADO53365.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum
           S17]
          Length = 255

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 35/262 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+Q++ +V+  + E   +  + +      +  +                    GA    L
Sbjct: 10  ELQRIRVVIADDQELVRAGFAMVIGSQPDIQVVGQAGD---------------GAQAVSL 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      +    ++  E        ++   +    F      +   
Sbjct: 55  AESLHPDVVLMDVRMPGMDGLEATSRISALEAAAGDA-PRKTRVIILTTFDLDEYVMAAI 113

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHW 180
               + +     +   +   +  ++    II       +    +   Y  +   + D + 
Sbjct: 114 NAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYA 173

Query: 181 GKDFE----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                                LT RE E L  I+ G ++ EIA  L IS  T   ++A I
Sbjct: 174 DGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHI 233

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N +V
Sbjct: 234 LAKINARDRVQAVVFAYDNGLV 255


>gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 219

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQALIRTGFATIIDAQPDLEVVGECGDGRAAVGLAGRLHPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A +       V      L    F+             + +       A++  G
Sbjct: 66  IGATRLLAGAG------VANPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +  +     +  LT RE+E L  I++G ++
Sbjct: 120 IRTVASGAALLAPEVTRQL---VGRYAARIRPAED-SSSEIPLTPRELEVLRLIADGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R+ +V
Sbjct: 176 SEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218


>gi|311064578|ref|YP_003971303.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866897|gb|ADP36266.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 248

 Score =  135 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 35/262 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+Q++ +V+  + E   +  + +      +  +                    GA    L
Sbjct: 3   ELQRIRVVIADDQELVRAGFAMVIGSQPDIQVVGQAGD---------------GAQAVSL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      +    ++  E        ++   +    F      +   
Sbjct: 48  AESLHPDVVLMDVRMPGMDGLEATSRISALEAAAGDA-PRKTRVIILTTFDLDEYVMAAI 106

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHW 180
               + +     +   +   +  ++    II       +    +   Y  +   + D + 
Sbjct: 107 NAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYA 166

Query: 181 GKDFE----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                                LT RE E L  I+ G ++ EIA  L IS  T   ++A I
Sbjct: 167 DGSSTIPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N +V
Sbjct: 227 LAKINARDRVQAVVFAYDNGLV 248


>gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 213

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 11/218 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   +     +  +     G     L          +D  +         
Sbjct: 2   VDDHELFLQGLQTVLEIEEDISVVGRAGDGQEALTLASGTSPDIVLMDVRMPGRDGIAAA 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           + R   +   V     +           Y   +     +   +  +
Sbjct: 62  GAIKR--------AVPRTRIVMLTVSDEESDLFEAIKAGAVGYLLKSIPPHEVADAVRAV 113

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                +I      ++  +  +      + D        LT RE+E L  ++EG+ + EIA
Sbjct: 114 HNGQSLISPSMASKL--MVEFATMARGTEDRPRVNAPHLTARELEVLKLVAEGRANREIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS NTV N++ +I+ K    +R  A+ YAVR  +
Sbjct: 172 RKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 209


>gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia
           fergusonii B253]
          Length = 251

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L+R   +         +   T+ +   ++ L         +      S +P   V 
Sbjct: 21  RRTMLSRFQEMASAEDVFQELQLQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 80

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYC--SLTFDVA 138
                       VL+        +              +     G+        +  + A
Sbjct: 81  YYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDAARAHGLRRGVTQYLMLSNRA 140

Query: 139 RIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLT 195
              + L  +  +   I  D L  ++ LL     N+      ++        + RE E L 
Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARVQHEMVMTPAMRFSKRETEILR 200

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    I+
Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251


>gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 252

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 34  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 78

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 79  DLLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 130

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 131 GATGYLLKEISTDEVSTAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 188

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 189 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 248

Query: 246 V 246
           +
Sbjct: 249 L 249


>gi|288554158|ref|YP_003426093.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288545318|gb|ADC49201.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 78/247 (31%), Gaps = 29/247 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N   + R   +       + + R++ ++                G+    LV       
Sbjct: 1   MNENKKIRIVLIDDHQLFREGVKRILAMEPDFEIVADGE-----DGSEARALVDEHRPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +  +  +           L   +               + Y 
Sbjct: 56  ILMDINMPKVNGVEATRELVAAYPN--------VRVLILSIHDDETYVTHVLKTGASGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------ 185
               D   +   + ++   G  I       +      +     + D  + +         
Sbjct: 108 LKEMDAGALIEAVKVVASGGSYIHPKVTHNL----IKEYRRLATEDDKYEESIGFREVEY 163

Query: 186 ------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE E L  +++G+++  I   L IS  TV N++++I++K +   R+ A+  
Sbjct: 164 RKPLHILTRRECEVLQLMTDGQSNRAIGESLYISEKTVKNHVSNILQKMSVNDRTQAVVE 223

Query: 240 AVRNNIV 246
           A++   V
Sbjct: 224 AIKKGYV 230


>gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall
           stress [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 211

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +  +                    G     L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASD---------------GGEGVRLAAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  SPDVILMDLVMEGMDGIEATKQICRELP---DP-----KIIVLTSFIDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +         +           A    +  +    H      LT
Sbjct: 99  LSYLLKTSKAAEIADAIRAASKGEPKLESKV-------AGKVLSRLRHSGEHALPHESLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 152 KRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210


>gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 205

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 21/218 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +     +  +++   G   + L +  +     +D  +       
Sbjct: 2   LVADDHALIRKGLVQLIEMEKDIKVISQASNGEEAYKLAKKFMPDLILMDVNMPVMNGIK 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             + +   +             LF  +++     +         Y     +   +   + 
Sbjct: 62  AAKMLKEEKHP--------SKVLFLTIYNDREYLLEALKLGVEGYILKDAEYDDLIKAIK 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++  G  I    + EI  +                   +LT RE+E L  IS G ++ E
Sbjct: 114 TIYNGGVYIHPSLMEEIDNIDQETLKK------------DLTPREIEILKLISNGYSNKE 161

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  L +S  TV N++ +I +K   K R+ A  Y ++N
Sbjct: 162 IAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIYMLKN 199


>gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 203

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 35/216 (16%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + + R      T     ++   +  +G  +F L+       QK    + ++ P       
Sbjct: 8   EHIDRFTKAKKTSDIQQQLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTSWFDAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           +         V+    +   P+F    +  +P                            
Sbjct: 68  SERHYLTQDPVVFLGLKQTQPIFWNKLDCDSP---------------------------- 99

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                   L     +      + KS         EL+ RE ECL W SEGKTS EIA IL
Sbjct: 100 -------WLPSASYIFNSALQLIKSRPDLMKYLTELSDREKECLFWASEGKTSWEIATIL 152

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GIS  TVN ++  +  KT +K R+ AIA ++ + I+
Sbjct: 153 GISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 188


>gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 237

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 14/233 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            R   L  +  +     +      +    G   F       F          S++P +  
Sbjct: 4   EREGYLEILSRITTEEEFFSLALEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWK 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVAR 139
                 +      +++     + P+                    G+ + +         
Sbjct: 64  SRYISEDYTSIDPIVRHGLLEYMPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYG 123

Query: 140 IRIGLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +     L+     I   + L +      I  +         +  +    +  LT RE E 
Sbjct: 124 LISMFSLVRSAESIAAAEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEM 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT  EI +IL I + TV  +I + MRK  +  ++ A   A    ++
Sbjct: 184 LKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236


>gi|150398334|ref|YP_001328801.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150029849|gb|ABR61966.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  135 bits (340), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 24/238 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            LA +  +            L +  G   + +VR     E  L  +++  WP    +   
Sbjct: 9   FLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPEGWPQIYI 68

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------------PENITPPAGMDNRYCSLTF 135
             +       ++                                     G+ + Y     
Sbjct: 69  RKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYIFPVH 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTG 188
               +   L  +  +   +    L     +A                       + ++T 
Sbjct: 129 GRRGLMGNL-TVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTR 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R   +A A R  ++
Sbjct: 188 REMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAFRLGLI 245


>gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ +  + E     +         +  +   +                G     LV  +
Sbjct: 2   ISVAVVDDHEMVRKGIISYLATEAGIKVIGEAES---------------GNEAVKLVLNE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D ++ +    +  R +  S              +    ++   +         
Sbjct: 47  RPEIVLMDLLMENGNGIEATREILKS--------YPGCKIIIITSYYDDEQVFPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T + A +   +        +I           A    + F+  +     D  LT
Sbjct: 99  FSYMLKTANAAEVVNAIKKAAQGESVIESKV-------AGKMVSRFREKEKKPHDD--LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I EG T+ EI+  L I   TV  ++++I+ K     R+ A  YA RN I+
Sbjct: 150 EREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNILSKLGVTDRTQAAVYANRNGII 208


>gi|313140461|ref|ZP_07802654.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313132971|gb|EFR50588.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 248

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 35/262 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+Q++ +V+  + E   +  + +      +  +                    GA    L
Sbjct: 3   ELQRIRVVIADDQELVRAGFAMVIGSQPDIQVVGQAGD---------------GAQAVSL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      +    ++  E        ++   +    F      +   
Sbjct: 48  AESLHPDVVLMDVRMPGMDGLEATSRISALEAAAGDA-PRKTRVIILTTFDLDEYVMAAI 106

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHW 180
               + +     +   +   +  ++    II       +    +   Y  +   + D + 
Sbjct: 107 NAGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYA 166

Query: 181 GKDFE----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                                LT RE E L  I+ G ++ EIA  L IS  T   ++A I
Sbjct: 167 DGSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHI 226

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N +V
Sbjct: 227 LAKINARDRVQAVVFAYDNGLV 248


>gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42]
 gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42]
          Length = 240

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 18/226 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEK 95
              +        M  LT+ +G + FL++        ++ +  + ++WP ++V        
Sbjct: 15  AGFNTHYEVFKYMKGLTQGLGMTAFLIMTLPTVDFVEIGATKIITNWPAEMVDYYDAHNL 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDVARIR 141
                V++R      P  + +                ++    GM+        D A  R
Sbjct: 75  MVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGR 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEG 200
             + +   +   +    + ++  +A    +           K    T  E++CL   + G
Sbjct: 135 GAMSISGSRNFSM--VEMAKLLFIATLIYDRLSQLTLNEKHKPVAFTQSELDCLRLTAGG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + S EIA +L +S + VNN I S++RK    TR+ A+  A+R NI+
Sbjct: 193 RKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSALRLNII 238


>gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ECD227]
          Length = 240

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L+R   +         +   T+ +   ++ L         +      S +P   V 
Sbjct: 10  RRTMLSRFQEMASAEDVFQELQLQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYC--SLTFDVA 138
                       VL+        +              +     G+        +  + A
Sbjct: 70  YYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDAARAHGLRRGVTQYLMLSNRA 129

Query: 139 RIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLT 195
              + L  +  +   I  D L  ++ LL     N+      ++        + RE E L 
Sbjct: 130 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    I+
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 240


>gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635]
 gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635]
          Length = 207

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 79/226 (34%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L   +S    +  L ++     FL  L   +      LD ++  
Sbjct: 1   MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLKEHEHPDIVLLDLVMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++   +       +Y  ++         +      I+      + Y     +  ++
Sbjct: 61  MNGIEITEYIKA-----HYPEIKVL---VLTSYVDDEHVISAINKGADGYEMKDVEPQQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    ++I                ++ ++         +L+ RE+E L  + +G
Sbjct: 113 IETIRRVMNDEKMIHP-----------KAQDVIETVSQKPHYTNKLSKREIEVLREMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 248

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 77/261 (29%), Gaps = 33/261 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +A                      GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMAVAAQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPEN 119
                     +D  +      +  R ++        +  Q        +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRQISALRHRFAADGTQSEVTHTKVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +       + +     +   +   +  +F    II       +         M  +    
Sbjct: 108 MAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGRP 167

Query: 180 WGKDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                              +LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+
Sbjct: 168 ENSATTSTTDSTYTDPELDDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHIL 227

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ +A  N++V
Sbjct: 228 AKINARDRVQAVVFAYENHLV 248


>gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa]
          Length = 239

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    +      + W+  +  +   +G S  L        +   ++ +  ++P       
Sbjct: 5   DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLHKDSQDYENAFIVGNYPAAWHEHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARI 140
             +   +    + + T+   P+F                    AG+              
Sbjct: 65  DRTGYARVDPTVSQCTQNVLPIFWEASIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGE 124

Query: 141 RIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVEC 193
              L L        +    +   L  + +L  Y               K   LT RE E 
Sbjct: 125 LGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHPVSKPVVLTSREKEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS EI+VI   S   VN ++ +I RK    +R  A   AV   ++
Sbjct: 185 LQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIMAVNLGLI 237


>gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 248

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 33/261 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +                       GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMTVAAQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +  Q        +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRQISALQHRFAADGTQSEVTHTKVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +       + +     +   +   +  +F    II       +         M  +   H
Sbjct: 108 MAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGAH 167

Query: 180 WGKDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                              ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+
Sbjct: 168 GNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHIL 227

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ +A  N++V
Sbjct: 228 AKINARDRVQAVVFAYENHLV 248


>gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 220

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 75/239 (31%), Gaps = 30/239 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V+++L  +       V  +   ++ L  +                    G     L   
Sbjct: 2   PVSVLLVDDHALFRRGVRTILETAEDLLVVGEASN---------------GKQAVELYAE 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + VR +           ++        V     +        
Sbjct: 47  LRPDLVLMDIRMPVMGGLEAVRKLRAM-----DPQVRIL---ILTVSEEDDDLFEAIRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N Y     D   +   +  +     +I        GLLAA                  L
Sbjct: 99  ANGYLLKNVDPDELISSIQKVAAGEAVIP-------GLLAARIVAELHKEATPEDVLEPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E L ++S G ++ EIA  L IS +TV N+I +I+ K     R  A AYA+R  I
Sbjct: 152 TSRELEVLGYLSTGASNREIAKQLFISEHTVRNHIQNILGKLHLTNRVQAAAYAIRQGI 210


>gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii]
          Length = 240

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A ++ +G  +            +    +   +P   
Sbjct: 3   LRWQDAYHQFNTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +    ++        +     +              GM       +   A
Sbjct: 63  MAHYQARNYIEIDPTVRDGAASPNMIIWPDADAAEQPSLWRDARDFGMSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREV 191
           R   GL+ +  +   +    +  + L A + AN        F    +       LT RE 
Sbjct: 122 RGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA-IAYAVRNNIV 246
           E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A +  A+   ++
Sbjct: 182 EVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVVKAIGMGLI 237


>gi|311113859|ref|YP_003985081.1| DegU family transcriptional regulator [Rothia dentocariosa ATCC
           17931]
 gi|310945353|gb|ADP41647.1| transcriptional regulatory protein DegU [Rothia dentocariosa ATCC
           17931]
          Length = 241

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 70/255 (27%), Gaps = 31/255 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+ ++L  + +     +  L      L  ++  D   +       + E           
Sbjct: 3   EQITVMLVDDQQLVRGGLKMLINSQPDLQVVLEADDGAAAVDSYARMAEE---------- 52

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   +D  +      +  + +           +     +    F            
Sbjct: 53  GTAPQVVLMDVRMPIMDGLEAAKSILELN-------VPDSRVIMLTTFDVDEYVYAAVRA 105

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
             + +         +   +  +     +I       +         +    D        
Sbjct: 106 GASGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSASVAPTP 165

Query: 185 -------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE E L  I++G ++ EI+  L +S  T+  +++ ++ K   +
Sbjct: 166 QEEPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLSKLDAR 225

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+  A    IV
Sbjct: 226 DRVQAVIMAYEAGIV 240


>gi|294102849|ref|YP_003554707.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617829|gb|ADE57983.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 223

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 72/243 (29%), Gaps = 25/243 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             +++V I+L  + +     +  L    + +  +   D                G     
Sbjct: 2   KSMKKVRILLADDHQILRDGLRTLLNTQEDMEVIAEADT---------------GRKAID 46

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D ++      +    +           L     L   +          
Sbjct: 47  LALCHCPDVLVMDVVMPELNGIEATSRLKKD--------LPEIKVLALSMHADRRFVAEM 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +         +   +  +      +         ++  Y   +      H   
Sbjct: 99  LKAGASGFLLKECAFQELAEAIRSIIKGKMYLSPSISK--CVIEEYVGFLSGDEKEHTDS 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L  I+EGK + +IA  L IS  TV  +  +IMRK    + +    YA++
Sbjct: 157 ESALSHREKEVLQLIAEGKANRDIAKTLHISVKTVETHKYNIMRKINLHSVAELTKYAIK 216

Query: 243 NNI 245
           + +
Sbjct: 217 SGL 219


>gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 250

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 32  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 76

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 77  DLLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYEAIKA 128

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 129 GATGYLLKEISTDEVSTAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 186

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 250

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 32  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 76

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 77  DLLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYEAIKA 128

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 129 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 186

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
 gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           Rock3-28]
          Length = 215

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 80/221 (36%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +S    +  + E       L+       E   D ++   +  +
Sbjct: 5   VLLVDDHTVVLKGLAFFLSTQEDLELVGEANNGKEALV----KVGETNPDVVLMDLYMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A +   K Y  ++    +    F      +       + Y     +  ++   + 
Sbjct: 61  MDGVEATACIKKEYPDVK---VIVLTSFSDQAHVLPALRSGASGYILKDVEPDQLVEAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +     +  D    +      Q    + + VH      LT RE E L  +++G ++ E
Sbjct: 118 SAYKGNIQLHPDIASTLISQTLPQEERAEEHFVHVD---VLTARENEVLQLLAKGMSNKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L I+  TV  +++SI+ K     R+ A  YAV+N IV
Sbjct: 175 IASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGIV 215


>gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
 gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3]
          Length = 240

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R D+L +   +         +   TE +   ++ L         +      S +P   + 
Sbjct: 10  RRDMLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMS 69

Query: 89  CMALSEKDKYYNVLQR--PTELFCPVFHTLPENI------TPPAGMDNRYCSLTFDVARI 140
                       VL+         P   +L  +           G+              
Sbjct: 70  HYQAENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHA 129

Query: 141 RIGLMLLF-----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +  L +               +         +    +    ++    + + + RE+E L 
Sbjct: 130 QGFLSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 190 WTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240


>gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. ND132]
 gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans ND132]
          Length = 226

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  +       +  + +R    A                      G     L R    
Sbjct: 8   IMIVDDHPLFREGLKTIVSRDANFAVCAEAGT---------------GQEGVNLARTHKP 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +       ++R +           L     +   +       +         
Sbjct: 53  DIVLVDISMPDKSGIQMIRELKDE--------LPLTRFVIISMHSEADYIVEAFRAGATG 104

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y        ++  GL  +      +      E+  +           D        LT R
Sbjct: 105 YIIKESAAGQLLKGLNTVAGGNLFLDSALSQEV--VFKLLQTKTGEADGQDDPYATLTPR 162

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E +  ++EG T+  +A  L IS  TV N+  ++M+K   K+    + YA R  ++
Sbjct: 163 EQEVMRMLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVELVRYAARLGLI 219


>gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 240

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 72/258 (27%), Gaps = 35/258 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E   + ++L  + +     +  +    D +  +      +        +        
Sbjct: 4   MEKENAIIKVLLADDHQLFREGLKRILNMEDDIDVIGECGDGIQVLEFCNEV-------- 55

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  + ++        +          +      +   +        
Sbjct: 56  -------KPDIVLMDINMPTENGVQATEKLRE--------MFPEIKVIILSIHDDESYVF 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ----------- 169
                  N Y     +   +   +  +      I      ++                  
Sbjct: 101 ETLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYVNEAGAMAE 160

Query: 170 -ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                       G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI++K 
Sbjct: 161 SGTREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKM 220

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+  +++   V
Sbjct: 221 EVDDRTQAVINSIKYGWV 238


>gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5]
 gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR
 gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis subsp. subtilis str. 168]
 gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis]
 gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall
           stress [Bacillus subtilis BSn5]
          Length = 211

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +  +                    G+    L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASD---------------GSEGVRLAVEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  SPDVILMDLVMEGMDGIEATKQICREL---SDP-----KIIVLTSFIDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +         +           A    +  +    +      LT
Sbjct: 99  LSYLLKTSKAAEIADAIRAASKGEPKLESKV-------AGKVLSRLRHSGENALPHESLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 152 KRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210


>gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 233

 Score =  135 bits (339), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 77/230 (33%), Gaps = 19/230 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
           QR   +  +    D     + L   +     +  + +   G     +   D      +D 
Sbjct: 8   QRMLRMIKVLIVDDHEMVRLGLSTYIGVQPDLEVVDQAENGQEGVEMALKDRPDIILMDL 67

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           ++      +  + +  +          +   +    F    +           Y   T  
Sbjct: 68  VMPVKDGIEATKEILKAW--------PQARIIILTSFIDDAKVYPAMEAGAASYILKTAT 119

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +       R++      ++              +    +  ELT RE E L  
Sbjct: 120 AEEIAKAIRQTASGERVLEPQVTTKM----------MNRMNHPQPQYDELTNREREVLQL 169

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 170 IAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 219


>gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 240

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPQAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
              L       R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family
           [Tepidanaerobacter sp. Re1]
          Length = 215

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 81/242 (33%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +VL  +       +  +    + +  +      +    ++               
Sbjct: 1   MEKITVVLADDHVLMRKGLRKILEMEEDIEVIDEASDGIEAIEKVME------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  +      ++ + +          ++         ++      +    
Sbjct: 48  --KKPQVLLLDINMPKLNGIEVTKSLREKNV--DSQIV------ILTIYDDREYLLELLK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   +         I  +    +      + N       +     
Sbjct: 98  LGISGYVLKDIEPQGLIEAVRSASRGETYIQPNLTRAL----VAEYNRLTQPVSNNDVRK 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I++G ++ EI++ LGIS  TV N+++SI+RK     R+ A  +A++N 
Sbjct: 154 NLTAREKEVLADIAKGMSNREISIDLGISEKTVKNHVSSILRKLNLMDRTQAAVFAIKNR 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|291301939|ref|YP_003513217.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571159|gb|ADD44124.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 15/235 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ +   +   V   P        ++  +  +             G     L R  L   
Sbjct: 1   MSTDKPIKVLLVDDQPLLRTGFRMVLGAEADIDIIAEAGD-----GVEAVDLARRLLPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +         + +  ++             L    F      +         + 
Sbjct: 56  VLMDIRMPRMDGVAATKAIVEAKLP--------VRVLILTTFDLDEYVVGALRAGAAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +       +   +  +     ++    L  +  L  +   + +           LT RE 
Sbjct: 108 AKDVPAEDLVAAIRSVSSGEAVVAPRILRRL--LEKFVDRLPEPDGATPASLEVLTERER 165

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G ++ EIA  L +S  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 166 EVLILVAKGMSNTEIAKELTVSETTVKTHVGHVLTKLGVRDRVQAVVLAYETGLV 220


>gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 240

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPQAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L       R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
 gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578]
 gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923]
          Length = 212

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G     +    
Sbjct: 2   IKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAEN---------------GREGADMALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +         +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKEIMQNW--------KEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++            +         +LT
Sbjct: 99  SSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL--------TAKPEKNLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFKHDLV 209


>gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 226

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA+     R  L     +D  +     
Sbjct: 4   RVLLADDQPLLRTGFRLILEAEQDITVVGEAGDGATALEQARALLPDVVLMDIRMPGVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   +K  +         L    F      +       + +         +   
Sbjct: 64  IEATRRIVREQKGGHVP-----RVLVLTTFDLDEYIVEALRAGASGFLLKDVPPDELVQA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     I+       +    A               +  LT RE+E L  I++G ++
Sbjct: 119 IRVVAAGDAIVAPSVTRRLLDKFAALLPPADRQPTPALLE-RLTERELEVLRLIAKGMSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++ +++ K   + R  A+  A    +V
Sbjct: 178 AEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGLV 220


>gi|319441505|ref|ZP_07990661.1| LuxR family two component transcriptional regulator
           [Corynebacterium variabile DSM 44702]
          Length = 232

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 68/248 (27%), Gaps = 30/248 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +       V+ + +    +  +           R+ +L               
Sbjct: 2   ISVLVVDDQALIRQAVADIISTHPDIEVVATAGDGEDAVDRVASL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +  + +            L    F      ++      
Sbjct: 47  HPDVVLMDVRMP------VLDGIGATGQICADPANASTRVLILTTFEEDEYVVSALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
             +     +   I   +  +     +        +        +         G      
Sbjct: 101 GGFIGKGAEPEDIVRAVQAVHAGDSLFSPAATRSLITRYIDVPDATGQGGASSGGTVSED 160

Query: 185 ------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LTGRE E L  + +G ++ EIA    IS +T   ++  IM K     R+  + 
Sbjct: 161 AAKDLARLTGREQEVLLLVGQGLSNQEIAEKFFISPHTAKTHVNRIMSKINAHDRAQLVI 220

Query: 239 YAVRNNIV 246
            A  + ++
Sbjct: 221 LAYESGLL 228


>gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii
           ATCC 35469]
 gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC
           35469]
          Length = 251

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L+R   +         +   T+ +   ++ L         +      S +P   V 
Sbjct: 21  RRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS 80

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYC--SLTFDVA 138
                       VL+        +              +     G+        +  + A
Sbjct: 81  YYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDAARAHGLRRGVTQYLMLSNRA 140

Query: 139 RIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLT 195
              + L  +  +   I  D L  ++ LL     N+      ++        + RE E L 
Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 200

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    I+
Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251


>gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 269

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 15/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R++  R   V         L  ++  +  +          E V  +  LL          
Sbjct: 49  RKEPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGDGAEAVDKAADLL-----PDIVL 103

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +    +          V      +   +     +           Y   
Sbjct: 104 MDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKAGATGYLLK 155

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +  +      I      ++  L  +++ + ++ +        LT RE+E 
Sbjct: 156 EISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPRLTDRELEV 213

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 214 LKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 266


>gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 246

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 17/222 (7%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVRCMALSEKDKYY 99
                   +  +++  G   F+++         L +  + + WP + +R    +   +  
Sbjct: 25  NEDDVKRVLDQISDAFGFRGFMVLAIPDSGCHSLAAQALLTSWPMEFLRRYDSAGLIEGS 84

Query: 100 NVLQRPTELFCPVFHTLPENITP--------------PAGMDNRYCSLTFDVARIRIGLM 145
            V+QR      P  +                       AGM         D    R  + 
Sbjct: 85  PVIQRLRRSTIPFTYDAHLLARRRVDGKGEAAISVFEAAGMPRGLYLPVHDAKGGRAAIA 144

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSD 204
                  ++  D +  +   A    +       H  +    L+ RE+ECL W + GKT+ 
Sbjct: 145 F-GGDREVVSSDEMQALNFWAGLLYSRLSEVRTHDRRRPGSLSRREIECLRWAAAGKTTV 203

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  ++
Sbjct: 204 EMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGLI 245


>gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 213

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    + +  +           ++  +               
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDNGIEVVAEASDGKQAVEQIPQI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +              +    F      +       
Sbjct: 47  QPDVVLMDMRMPVMSGLEALQMLSRNGTLP--------PTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     V  +   +  +  +               L               
Sbjct: 10  IKVLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIECFQTL--------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R M  +  +           L   V  T            
Sbjct: 55  QPDVTLLDIHMPVCNGLETARKMREANPN--------TKILMLTVSETEEMLFEAVKSGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
           + Y   +    R+   +  ++    ++       + +    + +      +   +   EL
Sbjct: 107 SGYVLKSVSPERLIECVRQVYEGEPVVPSS----LAMKMIAEFSRTAETRMPSSESVTEL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L ++S G ++ EIA  L IS NTV N++  I+ K     R+ A AYAVRN I
Sbjct: 163 TEREREVLQYLSAGASNKEIARALFISENTVRNHVRHILDKLHLSNRAQAAAYAVRNGI 221


>gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 221

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 62/216 (28%), Gaps = 11/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     LV         LD  +      
Sbjct: 5   VLLVDDQGLIRQGLRALLELESDLEIVGEAENGEQAINLVAEFQPDVVLLDIRMPIMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +             +   L    F                Y         + + +
Sbjct: 65  AATKEIQKR--------FSKTKILVLTTFDDDEYVSAALQNGAMGYLLKDTPSEELAVAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++     +    + ++  L  +                ELT RE E L  I+ G ++ 
Sbjct: 117 RAVYKGYTQLGPGIVKKL--LTQFSNGTPIHSTPVPSTLNELTPREKEVLRLIATGASNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EIA  L IS  TV N++ +I+     + R+ A  +A
Sbjct: 175 EIAQELYISEGTVKNHVTNILNTLNLRDRTQAAIWA 210


>gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
 gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2]
          Length = 240

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+++    + L         +  + + + +P   V 
Sbjct: 10  RRSMLLRFQEMATAEDVYTELQQQTQHLEFDFYALCVRHPVPFTRPKTSLHTTYPKAWVA 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFSQGHLPWNDTLFRDAQPLWDAARNHGLRKGMTQCLMLPNRA 129

Query: 141 RI--GLMLLFPKGRIILRDRLW-EIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
                +     +   +  D +   + LL     ++      D+    +   + RE E L 
Sbjct: 130 LGFLSVSRASIRNSRLASDEVELRMQLLVRESLSVLTRLEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi
           BJ001]
          Length = 243

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 79/233 (33%), Gaps = 18/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLV 87
           ++L  +            +      +G  + +        L    + + ++  +   +  
Sbjct: 11  EILKSLDRAHSREDILRAIMPRLNAMGIEYVISAMIPQKRLPARTQKNFVILENTSDEWN 70

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLT 134
           R         +  ++Q           +                N     G+ + +    
Sbjct: 71  RLYFSKGYMYFDPIVQATLSSTTGFRWSETDPAGLQDPKARQVMNEAVEFGLGDGFTVPL 130

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVEC 193
             +   R GL     +   I   +   + L+A+Y        D     +   LT RE E 
Sbjct: 131 ATLEEERGGLTFAG-RQLDISPGQRGMLTLIASYVVGQTLLIDNGPSERRMGLTPRERES 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 190 LQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 237

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 77/243 (31%), Gaps = 25/243 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E   + +++  +       +  +  +   +  +                    GA    +
Sbjct: 17  EANPIRVLIVDDHALFRRGLEMVLAQEVDIEVVGEAAD---------------GAEAVTM 61

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      D    +           +     +   +     +     
Sbjct: 62  AAEMAPDIVLMDVRMPRRGGIDATSAIKEK--------VPSAKIVMLTISDEEADLFDAI 113

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y      +  +   +  ++    +I      ++  L+ + A +    D      
Sbjct: 114 KAGAMGYLLKEISIDEVAADIRAVYNGQSLISPSMASKL--LSEFAAMIKTKDDRPQLPT 171

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  +++G  + +IA  L IS NTV N+I +I+ K    +R  A+ YAVR 
Sbjct: 172 PRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVRE 231

Query: 244 NIV 246
            ++
Sbjct: 232 KLL 234


>gi|256397512|ref|YP_003119076.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363738|gb|ACU77235.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 239

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IVL  + E   +    +      +A +            +  L              
Sbjct: 20  PIRIVLVDDQELLRTGFRMVLNSQPDMAVVGEAGDGQVALDLLTRL-------------- 65

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +         R + +          +RP  L    F       T     
Sbjct: 66  -QADVVLMDVRMPRLDGVAATREIVVRG--------ERPRVLMLTTFDLDEYAFTALKAG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +  +     ++       +  L  +   +    +    +   L
Sbjct: 117 ASGFLLKDVPPPDLLAAIRAVHSGEAVVAPSTTRRL--LDKFAPMLPSESEPAPPELTVL 174

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +++G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 175 TDREHEVLLLVAQGMSNAEIAGKLFLSEATVKTHVGRILMKLGLRDRVQAVVLAYETGLV 234


>gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 240

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 71/251 (28%), Gaps = 35/251 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     +  +    D +  +      +        +               
Sbjct: 11  IKVLLADDHQLFREGLKRILNMEDDIDVIGECGDGIQVLEFCNEV--------------- 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + ++        +          +      +   +               
Sbjct: 56  KPDIVLMDINMPTENGVQATEKLRE--------MFPEIKVIILSIHDDESYVFETLRKGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ------------ANMFKS 175
           N Y     +   +   +  +      I      ++                    +    
Sbjct: 108 NGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIHQLRRMTYVNEAGAMAESGSREAG 167

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G++  LT RE E L  ++EGK++  I   L IS  TV N+++SI++K     R+ 
Sbjct: 168 VKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQ 227

Query: 236 AIAYAVRNNIV 246
           A+  +++   V
Sbjct: 228 AVINSIKYGWV 238


>gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 25  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 69

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 70  DLLPDIVLMDVRMPRRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 121

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 122 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 179

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 180 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 239

Query: 246 V 246
           +
Sbjct: 240 L 240


>gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein (LuxR family) [Ralstonia
           solanacearum CMR15]
          Length = 238

 Score =  134 bits (338), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 14/220 (6%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
            T      + A    +G  H            +   ++ +++P         +       
Sbjct: 18  STSDVFEHIEAAALALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRVRYLEAGYLHVDP 77

Query: 101 VLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            + +      P+  +           +     G+   +   + D   +   L L      
Sbjct: 78  SVAQACRSQAPIVWSDRLFQDVPALWDEAKAHGLRVGWAQSSLDSLGVGGMLSLSRSCEP 137

Query: 153 IILRDRL---WEIGLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +  R+       +  LA       +     DV    D  LT REVE + W ++GK++ +I
Sbjct: 138 LSARELAENTRRMQWLAHMAHVALSRLLRADVAGYVDDSLTNREVEVMKWTADGKSAQDI 197

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A IL IS+NTV+ ++ + ++K     ++ A+  A     +
Sbjct: 198 ADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237


>gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 246

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 17/236 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFD 85
               D  A    +D        +  ++E  G   F+++         L +  + + WP D
Sbjct: 11  LVLPDGHAISGAIDSEDDVRRALGRVSEGFGFRGFMVLAIPESGSHSLTAQALMTTWPMD 70

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------------AGMDNRYC 131
            +R    +       V+QR      P  +                       A M     
Sbjct: 71  FLRRYDSARLIDGSPVIQRLRRSTIPFTYDAHLLARGRVDGKGEAAICVFEQANMPRGVY 130

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
               D A  R  +         +  D +  + L A    +          +    L+ RE
Sbjct: 131 LPVHDAAGHRAAIAF-GGDRSAVSDDEMQALNLWAGLLYSRLSEVRTRDRRGPGSLSRRE 189

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +ECL W + GKT+ E+A I+ +S  TVN+Y+    RK  +  R   +A A+R  ++
Sbjct: 190 IECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245


>gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 218

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q+ ++L  +       +         +  +                    GA    L 
Sbjct: 1   MEQITVLLIDDHRVVRQGLRDFLELQPDIEVVGEAGS---------------GAEGVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R  L     +D ++      +  R +          V      +    F    +      
Sbjct: 46  RELLPDVVLMDLVMPGIDGVETTRRLKA--------VSPSSQVIVLTSFADDDKVFPAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +        ++  D   ++          F +   +     
Sbjct: 98  AGAISYLLKDISPEDLAHAIRAACRGEAVLHPDVAAKL-------MQEFNTPRPNEAPVE 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G ++ EIA  L +S  TV  +I++I+ K     R+    YA+R  
Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIAETLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKR 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 207

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L+  +S    +  +    G S+       L Q    D ++      +
Sbjct: 4   VVLVDDHHIVLQGLEFLLSTVEDLEVVK---GFSNGKTFLSYLEQHHLPDIVLLDLVMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +          + Y  ++         +      I+      + Y     +  ++   + 
Sbjct: 61  MNGIEITEVLKRQYPQVKVL---VLTSYVDDEHVISAIDKGADGYEMKDVEPQKLIETIH 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    RII  +    I  ++                  +L+ REVE L  + +GKT+ E
Sbjct: 118 KVLNGERIIHPEAKSVIEAVSKKPHF-----------TNKLSKREVEVLREMVKGKTNKE 166

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 167 IAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207


>gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
 gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri
           L37603]
          Length = 207

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 17/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D       L+  +S    +  +    G +   L    L   ++ D ++    
Sbjct: 1   MNKIILVDDHHIVRQGLEFLLSTVEDIEVV---QGFAEGKLFLEYLENNEQPDIVLLDLV 57

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D+          K+Y  ++         +      I+      + Y     +  ++  
Sbjct: 58  MPDMNGIEITEYLKKHYPNIKIL---VLTSYVDDEHVISAIEKGADGYEMKDVEPQKLIE 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    RII  D        A +  +   S      K   L+ RE E L  + +GKT
Sbjct: 115 TIHNVLNGKRIIHPD--------AKHVIDSMSSKPHFTNK---LSKRETEVLKEMVKGKT 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 164 NKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207


>gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +    +   G     L R  +     +D  +     
Sbjct: 4   RVLVADDQALVRAGFAALLDAQPDITVAGQAENGEQAVSLTRTLIPDVVLMDIRMPVLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    F                +     + A +   
Sbjct: 64  LEATRRIAT------DPALSGVRVVVLTTFELDEYVFEAMRAGATGFLVKHTEPAELVRA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++      ++      +         H  +  +LT RE E +T I+EG T+
Sbjct: 118 VRVVADGDALLSPSVTRKL----VAEFATHAKRPPHSSRLDDLTDREREVMTLIAEGLTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +S  T   +++ I+ K   + R+  +  A    +V
Sbjct: 174 AEIGSRLFLSPATARTHVSRILLKLGARDRTQLVVMAYEWGLV 216


>gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911]
 gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911]
          Length = 211

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 20/230 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           + R             L   +     +             G                +D 
Sbjct: 2   KVRVLVADDHNVVRRGLIFFLKTQKEIEIAGEAK-----DGLEAVEQTGRLKPDIVLMDL 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            + +    +  R +                 L    F      I       + Y     +
Sbjct: 57  DMPNMNGIEATRMIKQK--------YPETKVLMLTSFSDQDHVIPALEAGASGYQLKDIE 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   ++ +      +            ++  +   + D       ELT RE++ L  
Sbjct: 109 PDELVKAIVQVTQGENQLHPKAT-------SHLLSHLSNKDKKKSPIDELTKRELDVLKE 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++GK++ EIA  L I+  TV  ++++++ K     R+ A   AVR  +V
Sbjct: 162 IAKGKSNKEIAASLFITEKTVKTHVSNLLSKLEISDRTQAALLAVREKLV 211


>gi|307327120|ref|ZP_07606309.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887201|gb|EFN18198.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 236

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E   S  S +      +  +            +                  
Sbjct: 3   IRVVVADDQELVRSGFSMILDAQPDIEVIAEAGDGAEAVEAVRR---------------H 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +                 +    F +            
Sbjct: 48  APDVALLDIRMPGMDGIEACRAIGADG---------ACRTVMLTTFDSDEYVYEALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +           +  D        LT
Sbjct: 99  SGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRATARPRRPDPRLD---MLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   + R  A+  A    ++
Sbjct: 156 ARERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGLI 214


>gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 208

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 77/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRLGVSAYLSAQPDMEVIGEAES---------------GEKGVELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +              +    F    +         
Sbjct: 47  RPDMILMDLVMEPMDGIEATKQIISAW--------PEAKIMIVTSFLDDDKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   F    +   +   ++            S         +LT
Sbjct: 99  VSYMLKTSKASEIANAIRATFHGQSVFEPEVTGKM----------MNSMRKPSLPHEQLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++GKT+ EIA  L IS  TV  ++++I+ K   + R+ A+ YA ++ +V
Sbjct: 149 SREMEVLLLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLDVQDRTQAVIYAFKHGLV 207


>gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum]
          Length = 251

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 29/243 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-----LDSIVSSDWPFDL 86
           LL  +       +    +  +    G  ++ L+R       +       + ++  WP   
Sbjct: 9   LLVILEECSNPEAVVTELEQILHGCGFEYYGLLRHLPQNPVQQNPESWAAALAGRWPEHW 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------------TPPAGMDNRY 130
            R  A  +      +++       P                             G+++ Y
Sbjct: 69  PRIYAAKKYALIDPMVRYLGHAQRPFRWREAMAAFHKDAHQRRMEQMMVDAFGHGLEDGY 128

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-------KSYDVHWGKD 183
                        L L   K   +    +  +  +A               + +     D
Sbjct: 129 IFPIHGRNGTLASLSLAG-KPIELSPVEIALLEAVARKAFWRLLDLKGEAPALETVLPAD 187

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+
Sbjct: 188 TPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRH 247

Query: 244 NIV 246
            ++
Sbjct: 248 GLI 250


>gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus
           epidermidis RP62A]
 gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU045]
 gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 207

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 77/238 (32%), Gaps = 33/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +  D L+ +       ++   +                 + 
Sbjct: 3   KVILVDDHYIVRQGLEFLLSTVDDLSVLKGFKDGATFLSYLK--------------NNER 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD ++      ++          + Y  ++         +      I+      +
Sbjct: 49  PDIVLLDLVMPEMNGIEITEI-----LKQQYPEIKVL---VLTSYVDDEHVISAIDKGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   +  +    RII                ++ K+         +L+ 
Sbjct: 101 GYEMKDVEPQKLIETIHKVLQGERIIHP-----------QAKSVIKAVSKKPHYTNKLSK 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  + +GKT+ EIA  L +S  TV  +++ I  K     R+ A  YA+ N ++
Sbjct: 150 REKEVLKEMVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENKLI 207


>gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC1212]
          Length = 240

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEFDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
 gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. e14]
          Length = 231

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 9/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G      VR        +D  +     
Sbjct: 4   RVLLVDDQPLLRTGFRMILEAERDLAVVGEAGDGLQALDQVRALQPDVVLMDIRMPRMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   E+D           L    F      +       + +         +   
Sbjct: 64  VEATRQITGPERDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDAPANELVQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  L  Y  ++    +        LT REVE L  ++ G ++
Sbjct: 118 IRVVAAGEAMLAPSITRRL--LDKYATHLPSGEEPVPDTLHTLTEREVEVLKLVARGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L +S  TV  ++  ++ K   + R  A  YA  + 
Sbjct: 176 AEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216


>gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 222

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     + V +  +  D +  +      +     M  +               
Sbjct: 5   IRVLVVDDHAIFRTGVINTLSLEDDIEVVGEAGDGLEALEFMKKV--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    +D  +      +LV  M  +   +          +         + +       
Sbjct: 50  DFDVALVDVTMPRMGGVELVSKMEETGMARS--------VIALTALEDDRDMVFLSKAGV 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +           A    N F            L+
Sbjct: 102 KGFVLKTSGFDELISAIRTVSGGDNYVDSRA-------AGKLLNCFSEDTSRERGMSRLS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L W+++G    EIA  L +S  TV N+I+ I+ K     R+ A+A+A R+ +
Sbjct: 155 ERELEVLYWLAQGLNGQEIAERLSLSDKTVKNHISHILAKLKVSDRTQAVAWAWRSGL 212


>gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM
           16992]
          Length = 248

 Score =  134 bits (338), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 82/264 (31%), Gaps = 34/264 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E Q++ +V+  + E   +  + +      +A                      GA  
Sbjct: 1   MSKE-QKIRVVIADDQELVRAGFAMVIGSQPDMAVAAQARD---------------GAEA 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRPTELFCPVFHTL 116
             L          +D  +      +  R ++  +     +     + R   +    F   
Sbjct: 45  LALAETLHPDVVLMDVRMPGMDGIEATRQISALQHRFAADGTQSEVARTKVIILTTFDLD 104

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +       + +     +   +   +  +F    II       +         M  + 
Sbjct: 105 EYVMAAITAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANV 164

Query: 177 DVHWGKDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             H                   ELT RE E L  I+ G ++ EIA  L IS  TV  ++A
Sbjct: 165 GAHGNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVA 224

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I+ K   + R  A+ +A  N++V
Sbjct: 225 HILAKINARDRVQAVVFAYENHLV 248


>gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 224

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 3/223 (1%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
             R+  + ++       S       +++Y GA  +L+ R+D + ++  D +++S+WPFDL
Sbjct: 2   IARAAFIQQIEDRTICGSIANGFDLISDYTGAKCYLVARYDHYSDRHHDFVLTSNWPFDL 61

Query: 87  VRCMALSEKDKYYNV--LQRPTELFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIG 143
           VR +     D       + R    F P+F       +  P  +  R C + ++V ++R+ 
Sbjct: 62  VRNLGAGLVDAQARTSEVSRCLHAFEPLFQDVDGVAVNLPENLSPRVCLVPYNVGKVRLL 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + LLF K   +  DR+ +  L A+Y A  F           +LT REVECL+WI EGKTS
Sbjct: 122 MALLFEKDAFVSHDRIRDAALAASYHAVHFTEITTTSDSLSDLTDREVECLSWIGEGKTS 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA+I+GISRNTVNNYI SIM KT  KTRS A+A+AVR  I+
Sbjct: 182 DEIALIIGISRNTVNNYITSIMNKTGAKTRSEAVAFAVRQRII 224


>gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
 gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM
           20098]
          Length = 248

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 33/261 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++++V+  + E   +  + +      +A                      GA    L
Sbjct: 3   EEQKIHVVIADDQELVRAGFAMVIGSQPDMAVAAQARD---------------GAEAMAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +     + R   +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRQISALQHRFAADGTKSEVARTKVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +       + +     +   +   +  +F    II       +         M  +   H
Sbjct: 108 MAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGAH 167

Query: 180 WGKDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                              ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+
Sbjct: 168 GNSTASSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLTTVKTHVAHIL 227

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ +A  N++V
Sbjct: 228 SKINARDRVQAVVFAYENHLV 248


>gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 270

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +    + +  +                    GA       
Sbjct: 52  EPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGD---------------GAEAVEKAA 96

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 97  DLLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 148

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 149 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 206

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 207 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 266

Query: 246 V 246
           +
Sbjct: 267 L 267


>gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 240

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L +     R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 251

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 78/243 (32%), Gaps = 29/243 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-----QKLDSIVSSDWPFDL 86
           LL  +       +    +  +    G  ++ L R           +   + ++  WP   
Sbjct: 9   LLVILEECSNPEAVVTELEQILHGCGFEYYGLPRHLPQTPMQQNPEPWAAALAGRWPEQW 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------------TPPAGMDNRY 130
                  +      +++       P                             G+++ Y
Sbjct: 69  PHIYTAKKYALIDPMVRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGY 128

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKD 183
                    I   L L   K   +    +  +  +A               + +     D
Sbjct: 129 IFPIHGRNGILASLSLAG-KPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPAD 187

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+
Sbjct: 188 TPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRH 247

Query: 244 NIV 246
            ++
Sbjct: 248 GLI 250


>gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 222

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 28/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I+++ I++  +       +  +      L  +                    G     + 
Sbjct: 4   IEKITILIADDHSLVREGIRKILELEPDLQVVGEAAT---------------GQEAIEMT 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R    Q   +D  +      +  + +        +  +         +       I    
Sbjct: 49  RRYQPQVIIMDINMPGLNGIEATKVIRQE-----WPQIAIL---ALTIHDDEEYIIELLR 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +    R+I      ++           +          
Sbjct: 101 SGVSGYVLKDISAEELVQAVYQVARGARVIHPGVAQKVIGCI-----QKQKPFTPAPVSI 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +S GK++ EIA  L IS  TV N++  I  K     R+ A  YA+++ 
Sbjct: 156 PLTAREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAALYALKHG 215

Query: 245 I 245
           +
Sbjct: 216 L 216


>gi|16330984|ref|NP_441712.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1653479|dbj|BAA18392.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 222

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 77/242 (31%), Gaps = 21/242 (8%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ I L  +++     +               ++ +  W           G    +++
Sbjct: 1   MEKIRIALIEDEDLIRQGLQDAL----------TMEPSFEWVGEA-----ANGRLGLVMM 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      D+ + +     +    V+         +       +   +
Sbjct: 46  QQTRPDVVIIDIGLPDMNGIDVTQQLKKGPLNCQCRVV------ILTLNDQEETVLAAFS 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC        +   +         I       +   A        S        +
Sbjct: 100 AGADAYCMKDSRTELLIEAIQATHGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSLSY 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I +G ++ +IA  L I+  TV  ++ +I+ K     R+ A   A+R+ 
Sbjct: 160 GLTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIRSG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 249

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 34/262 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +A +                    GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMAVVGQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +           +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGMDGIEATRRISALQHRFAPDGSALDDAHTRVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---------------GL 164
           +       + +     +   +   +  ++    II       +                 
Sbjct: 108 MAAINAGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAAP 167

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++A  A+   +      +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 168 VSATSASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 227

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 228 LSKINARDRVQAVVFAYENHLV 249


>gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 251

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    G+       
Sbjct: 33  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVIGEAGD---------------GSEAVDKAA 77

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 78  DLLPDIVLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYEAIKA 129

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 130 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 187

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 188 LTERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 247

Query: 246 V 246
           +
Sbjct: 248 L 248


>gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 234

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 17/236 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D+ +   V   P        ++  +  +             G                +
Sbjct: 4   DDKIKVLLVDDQPLLRMGFRLILEGEDDIVIAGEA-----ADGLDALAQTAALKPDVVLM 58

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    +A                +    F       +      + +    
Sbjct: 59  DVRMPKMDGLEATERIAKEH--------PETKIIILTTFDLDEYAFSGLQAGASAFLLKD 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGRE 190
                +   + L+     ++       +       A +      +         +LT RE
Sbjct: 111 VAPEELVHAVRLVASGDAVVAPRVTARLLETYVRNAGHGVPGQAAEPKRDPLLDDLTPRE 170

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    +V
Sbjct: 171 QEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETGLV 226


>gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 234

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 14/231 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V   P   D +AR    +            T   G                L
Sbjct: 15  DRPIRVMVVDDHPMWRDAVAR-DLTESGFDVV-----ATAGDGPQAVRRAGAVSPDVLVL 68

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       + + +  S              L         + +         Y   +
Sbjct: 69  DLNLPGMPGVQVCKELVGSH--------PGLRVLVLSASGEHADVLEAVKSGATGYLLKS 120

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +        +        +       A+       +  K  +LT RE E L
Sbjct: 121 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASNEPKAPQLTDRETEVL 180

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 181 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 231


>gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 240

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L +     R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSISRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family)
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +     +   +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDFYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L +     R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 217

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 70/242 (28%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q+ ++L  +       +         +  +               L            
Sbjct: 1   MEQITVLLIDDHRVVRQGLRDFLELQSDIEVVGEAASGEEGIELARELL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +  R +          V      +    F    +      
Sbjct: 50  ----PDVVLMDLVMPGIDGVETTRRIKA--------VSPSSQVIVLTSFADDDKVFPAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +        ++      ++          F +   +     
Sbjct: 98  AGAISYLLKDISPEELAHAIRAARRGEAVLHPAVAAKL-------MQEFNTPRPNEPPVE 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++ L  +++G ++ EIA  L +S  TV  +I++I+ K     R+    YA+R  
Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIADTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKR 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
 gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis
           AMD]
          Length = 260

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 75/260 (28%), Gaps = 41/260 (15%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V  +    D           ++    M  + +   G     +   D      +D  +  
Sbjct: 5   GVIRVTIADDQELVRAGFAMVINSQQDMQVVAQAANGKQIVEITERDHPDIILMDVRMPV 64

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +   + ++          +    F      +       + +     +   +
Sbjct: 65  MDGLEATRKILQQKTNEN------TKIIILTTFDLDEYVMAAIHAGASGFLLKDTEPETL 118

Query: 141 RIGLMLLFPKGRIILRDRLWEI--GLL------------------AAYQANMFKSYDVHW 180
              +  ++    II       +   ++                  A    ++  S     
Sbjct: 119 LNSIRTVYQGNAIIAPTATKRLIETMIQQSKVATNTTENSAANYTAQASYDVQASSTAQT 178

Query: 181 GKDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             D               ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ 
Sbjct: 179 NPDVQETQSCTYENSAIPELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILG 238

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R  A+ +A  N +V
Sbjct: 239 KIDARDRVQAVVFAYENGLV 258


>gi|225020347|ref|ZP_03709539.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946736|gb|EEG27945.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 21/239 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +S +   +D +  +   D  +        L               
Sbjct: 2   IRVLLVDDQALIRQAISVMLDATDDITIVGQGDTGLDAIAMAQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++      +L   +A +EK      L     L    F      +       
Sbjct: 47  -----QPDVVLMDIRMPEL-DGIAATEKICGNPDLAATRVLILTTFENDTNIVAALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   +  +     ++       +                +      LT
Sbjct: 101 SGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTETDPEPYANPELIDALT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G ++ EIA  L IS +T   ++ +IM K     R+  +     + +V
Sbjct: 161 IREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYESGLV 219


>gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
 gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74]
          Length = 264

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 12/235 (5%)

Query: 14  REDEQRTSFVS-HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQE 71
            EDE R       +    D       L+  ++    +  + E   G+         L   
Sbjct: 37  DEDEPRPRAEPIRVLVVDDHALFRRGLEIVLATEEDIEVVGEAGDGSEAVEKATDLLPDI 96

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +    +          V      +   +     +           Y 
Sbjct: 97  VLMDVRMPKRGGIEACTAIKE--------VAPSAKIIMLTISDEEADLYDAIKAGATGYL 148

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +      I      ++  L+ +++ + ++ +        LT RE+
Sbjct: 149 LKEISTDEVATAIRAVADGQSQISPSMASKL--LSEFKSMIQRTDERRLVPAPRLTDREM 206

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 207 DVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261


>gi|302545751|ref|ZP_07298093.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463369|gb|EFL26462.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 6/223 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + E   G     + R        +D  +     
Sbjct: 4   RVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGRQGVDVSRNTHPDVVLMDVRMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +    +     V  RP  L    F              + +       A +   
Sbjct: 64  LEAARQLLEPPRG----VTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    A Q    +       +   LT RE E L  I+ G ++
Sbjct: 120 VRVVAAGEALLAPSVTRRLIAEFARQRPAPRRNSSLLRRS-GLTPRETEVLELIARGLSN 178

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 179 QEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 221


>gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 248

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +    + +  +                    GA       
Sbjct: 30  EPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGD---------------GAEAVDKAA 74

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 75  DLLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 126

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 127 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 184

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 185 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 244

Query: 246 V 246
           +
Sbjct: 245 L 245


>gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
 gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis
           L2-32]
          Length = 249

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 34/262 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ +V+  + E   +  + +      +A +                    GA    L
Sbjct: 3   EEQKIRVVIADDQELVRAGFAMVIGSQPDMAVVGQARD---------------GAEAVAL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ----RPTELFCPVFHTLPEN 119
                     +D  +      +  R ++  +     +           +    F      
Sbjct: 48  AETLHPDVVLMDVRMPGVDGIEATRRISALQHRFAPDGSALDDAHTRVIILTTFDLDEYV 107

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---------------GL 164
           +       + +     +   +   +  ++    II       +                 
Sbjct: 108 MAAINAGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAAP 167

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++A  A+   +      +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I
Sbjct: 168 VSAMSASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHI 227

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R  A+ +A  N++V
Sbjct: 228 LSKINARDRVQAVVFAYENHLV 249


>gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 248

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 73/253 (28%), Gaps = 23/253 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ E   R              A +I     +    +        GA    L        
Sbjct: 1   MSEEQRIRVIIADDQELVRAGFAMVIGSQPDMMVAGQAR-----DGAEAVALAETLHPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMD 127
             +D  +      +  R ++  +            +R   +    F      +       
Sbjct: 56  VLMDVRMPGMDGIEATRQISSLQHRFAATGAQTGPRRTRVIILTTFDLDEYVMAAINAGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------------GLLAAYQANMF 173
           + +     +   +   +  +F    II       +                +        
Sbjct: 116 SGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLTIPTSADTAP 175

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R
Sbjct: 176 SRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDR 235

Query: 234 SGAIAYAVRNNIV 246
             A+ +A  N++V
Sbjct: 236 VQAVVFAYENHLV 248


>gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 11/229 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            TS    +    D           +     +  + + V G      V         +D  
Sbjct: 1   MTSSTIRVLIADDQQMVRQGFSVLLDIQPDIDVVGQAVHGLDAIDKVAELAPDVVLMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 L    F              + +       
Sbjct: 61  MPELGGIEATRRITTER--------PHIRVLVLTTFDLDEYVYEALRAGASGFLLKDASA 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   + ++     ++       +  +A +             +  +LT RE E L+ I
Sbjct: 113 DQLAEAVRVVAAGDALLAPGVTRRL--IAEFSRLGTAPRAPLKERVGDLTERETEVLSLI 170

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 171 AQGLSNAEIAQSLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219


>gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 215

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 19/227 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V         L+ ++     +    ++    E +        +        LD  + 
Sbjct: 5   VLVVDDHAVLGKGLSMLLNSQDDMEVCGQVGTAKEALDT-----CKEKCPDVVLLDLSLP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                ++++ +  S              L   +               + Y         
Sbjct: 60  DKQGHEIIKELKESC---------SARVLALTMHEDEAYFKRVVEAGGDGYILKKAADDE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  ++    I+ +       LL  Y  N  K       K+++L+ RE E L  I+ 
Sbjct: 111 LISAIRSVYQGEVIVDKTFTK---LLIDYYRNPDKQSGT--EKNYDLSDREKEVLQLIAL 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ EIA  L IS  TV  +IA I  K     RS  + YA+RNNI+
Sbjct: 166 GYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYAMRNNII 212


>gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 250

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 32  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 76

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 77  DLLPDIVLMDVRMPRRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 128

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 129 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 186

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 187 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 246

Query: 246 V 246
           +
Sbjct: 247 L 247


>gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +R++  R   V         L  ++  +  +          E V  +  LL         
Sbjct: 28  SRKEPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGDGAEAVDKAADLL-----PDIV 82

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +    +          V      +   +     +           Y  
Sbjct: 83  LMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKAGATGYLL 134

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +      I      ++  L  +++ + ++ +        LT RE+E
Sbjct: 135 KEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPRLTDRELE 192

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 193 VLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246


>gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C]
 gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C]
          Length = 270

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +  + + +  +                    GA       
Sbjct: 52  EPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKAA 96

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 97  DLLPDIVLMDVRMPRRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 148

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 149 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 206

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 207 LTDRELEVLKLVATGMNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 266

Query: 246 V 246
           +
Sbjct: 267 L 267


>gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 211

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     VS   +  D +  +                    G          
Sbjct: 2   INVLLVDDHEMVRLGVSSYLSMQDDIDVIAEAKN---------------GREGVEKALSY 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  KPDIILMDLVMPEMDGIEATKEILHQW--------PEAKIIILTSFIDDEKVFPAINAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   ++I   +   +    +       ++        N             +LT
Sbjct: 99  KSYILKTSSASQIAKAIRDTYQGDGVFEPQVTDKL-------VNRI-QMKQQHFPHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ ++
Sbjct: 151 QRELEVLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHQLI 209


>gi|307324713|ref|ZP_07603919.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889595|gb|EFN20575.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 8/223 (3%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           ++    +  + E   G     + R        +D  +      
Sbjct: 5   VIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGRQGVEVSRRAHPDVVLMDVRMPEMDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +     D    V+ RP  L    F              + +       A +   +
Sbjct: 65  EAARQL----LDPPRGVIHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISAV 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTS 203
            ++     ++       +  +A +         D    +   LT RE E L  I+ G ++
Sbjct: 121 RVVAAGEALLAPSVTRRL--IADFARQRPAPRRDGPSARRSGLTPRETEVLELIARGLSN 178

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 179 QEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 221


>gi|295704610|ref|YP_003597685.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802269|gb|ADF39335.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 212

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 68/221 (30%), Gaps = 15/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     L          +D  +      
Sbjct: 5   ILIADDHHVVRKGLVFFLQTQPDLEVVGEASNGEEALKLATSLEPHIVLMDLSMPVLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +     A  E  K    +Q         F      I       + Y     D   +   +
Sbjct: 65  E-----ATKELKKQAPHIQVM---ILTSFSDQDHVIPALEAGASGYQLKESDPDELVAAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L      +       +           KS +        LT RE + L  I++GK++ 
Sbjct: 117 RKLMNGENQLHPKVTTHLLTRLT------KSSEKKVNFIDHLTKREKDVLKEIAKGKSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   L I+  TV  ++++I+ K   + R+ A  YAV++ I
Sbjct: 171 EIGAALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211


>gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 124

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/124 (62%), Positives = 96/124 (77%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           P G   +YCSLTF+V R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +
Sbjct: 1   PEGASRQYCSLTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDR 60

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DFELT RE+ECL WI+EGKTSDEIA+ILGISRNT+NNYI S+MRKTATKTRS AIA+AVR
Sbjct: 61  DFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 120

Query: 243 NNIV 246
           NN+V
Sbjct: 121 NNLV 124


>gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 214

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 76/241 (31%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       +  +      +              ++  L            
Sbjct: 1   MGKIKVLIADDHPLIREGLIKVLALDKEICVAGEAADGNEVLDKVNRL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   K D ++            A     K    ++    +   V       +    
Sbjct: 49  --------KPDVVLLDLNMPKFSGVEAAKILLKNDPEIK---VIALTVDDCEQRILELIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      V  +   +  ++    +I       +      + N   S     G   
Sbjct: 98  IGVSGYLLKDVSVDALISTIKAVYAGETVIAPRITQML----LREVNNPVSGGPASGGLA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E +  I+EGK + EIA  L IS  TV N+I+SI RK     R+ A  YA++ N
Sbjct: 154 ELTAREREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTN 213

Query: 245 I 245
           +
Sbjct: 214 L 214


>gi|325003494|ref|ZP_08124606.1| two component system response regulator [Pseudonocardia sp. P1]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S    L      L  +                    GA      R  
Sbjct: 2   IRVLLADDQALVRSGFRALLGSQPDLEVVAEAGD---------------GAEALAAARAQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +           L     +    F           G  
Sbjct: 47  SPDVVLMDIRMPGTDGLTATREITG------DPGLSGTRVIVLTTFTDDSYVFEAIRGGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     + A +   + ++     ++       +    A  A   +       +   LT
Sbjct: 101 SGFLVKDSEPADLIHAIRIVHGGEALLAPAVTRTLI---AEFAARSRGGPAVSPRLDALT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++DEIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 158 EREREVLAEVAAGLSNDEIAGRLHMSPTTAKTHVSRTMTKLGARDRAQLVVVAYESGLV 216


>gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1]
          Length = 251

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 23/253 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ E   R              A +I     +    +        GA    L        
Sbjct: 4   MSEEQRIRVIIADDQELVRAGFAMVIGSQPDMMVAGQAR-----DGAEAVALAETLHPDV 58

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMD 127
             +D  +      +  R ++  +            +R   +    F      +       
Sbjct: 59  VLMDVRMPGMDGIEATRQISSLQHRFAATGAQTGPRRTRVIILTTFDLDEYVMAAINAGA 118

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------------GLLAAYQANMF 173
           + +     +   +   +  +F    II       +                + A      
Sbjct: 119 SGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLTIPASADTAP 178

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R
Sbjct: 179 SRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDR 238

Query: 234 SGAIAYAVRNNIV 246
             A+ +A  N++V
Sbjct: 239 VQAVVFAYENHLV 251


>gi|295705373|ref|YP_003598448.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803032|gb|ADF40098.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 213

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q   I++  +       +  +    +    +                    G     L 
Sbjct: 1   MQPFRILIVDDHAHAREGIRDILEEYEDFIIVGEGTN---------------GQEAIELT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     +D  +      +  + + L               +   V   + +      
Sbjct: 46  EKLMPDIVLMDIGMPVMDGLEATKQIKLQ--------FPYVKIVVITVSDDITDLFDALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y             L         + ++       +A      F         D 
Sbjct: 98  KGAQGYLLKNLQSEVWYDYLRAFALDEVPMSKE-------IAFQILKEFPQETSIKKPDT 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  +++G ++ +I+  L IS +TV +++ +I+ K   + R    +YA +N 
Sbjct: 151 PLSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAFQNG 210

Query: 245 IV 246
           ++
Sbjct: 211 LM 212


>gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 234

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQALIRTGFTTIIDAQPDLEVVGECGDGRTAVHLAGRLRPDVVVMDVRMPGLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +       V      L    F+             + +       A++  G
Sbjct: 66  IEATRLLAGAGVP--DPV----KVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLDG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +       A+     +     D  LT RE++ L  ++EG ++
Sbjct: 120 IRTVAAGSALLAPEVTRRL---VGRYASRVAPPEPA-PADGPLTPRELDVLRLLAEGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I+R TV  Y++ I+ K   + R  A+ +A +  +V
Sbjct: 176 AEIAAALVITRETVKTYVSRILTKLDLRDRVQAVVWAYQTGLV 218


>gi|71906473|ref|YP_284060.1| LuxR response regulator receiver [Dechloromonas aromatica RCB]
 gi|71846094|gb|AAZ45590.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas
           aromatica RCB]
          Length = 221

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 77/240 (32%), Gaps = 27/240 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ ++L  +     S +  L  R+D    +      +    R+ +L             
Sbjct: 3   ERIRVLLVDDHTLFRSGIKSLLQRNDDFEVVGEAGDGLEGIKRVRSL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + V+ ++          +     L   V     + +     
Sbjct: 50  --KPDVALLDLHMPGVSGLEAVKVISEE--------MPEVRVLMLTVSEDAQDLMDALRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   +        ++ +    ++              +    +   
Sbjct: 100 GASGYLLKNIETDMLVDAIRRAAQGESVVSQQMTAKL----IQGVRNPPKAETATIERDR 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + RE + L  +++G+++ EIA  L ++ +TV  ++ +I +K    +R     YAV N  
Sbjct: 156 FSPRERDILASLAQGESNKEIARKLDLAESTVKIHVQNIFKKLNMSSRVQVALYAVENGY 215


>gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 280

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 72/245 (29%), Gaps = 23/245 (9%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           +  ++ + +++  +       +  L      +A +                    G    
Sbjct: 55  DDGLRPIRVLVADDHAILRDGIRTLLEAQPDIAVVGEAAD---------------GREAV 99

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L R        LD  +      +  R +                 L   +         
Sbjct: 100 ELARRLRPDVVLLDIGMPGMNGIEATRAILKER--------PETRVLILSMHDNEEYIFP 151

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y         +   L  +     I+  D   ++   AA +       +    
Sbjct: 152 ILEAGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGGGPQEGVPR 211

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE E LT I++G T+ EIA  L IS  TV  + ++IM K           YA+
Sbjct: 212 RVDGLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAI 271

Query: 242 RNNIV 246
           R+ ++
Sbjct: 272 RHGLI 276


>gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci]
          Length = 247

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 140 NARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPTQCKLSTRETGVLKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 200 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 221

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 77/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +S        L  +   +                G     +   D
Sbjct: 2   IKVLIVDDHEMVRLGLSTYIGVQPDLEVVDQAEN---------------GQEGVEMALKD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +          +   +    F    +         
Sbjct: 47  RPDIILMDLVMPVKDGIEATKEILKAW--------PQARIIILTSFIDDAKVYPAMEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++      ++              +    +  ELT
Sbjct: 99  ASYILKTATAEEIAKAIRQTASGERVLEPQVTTKM----------MNRMNHPQPQYDELT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 149 NREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207


>gi|305679871|ref|ZP_07402681.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660491|gb|EFM49988.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 21/239 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +S +   +D +  +   D  +        L               
Sbjct: 2   IRVLLVDDQALIRQAISVMLDATDDITIVGQGDTGLDAIAMAQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++      +L   +A +EK      L     L    F      +       
Sbjct: 47  -----QPDVVLMDIRMPEL-DGIAATEKICGNPDLAATRVLILTTFENDTNIVAALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   +  +     ++       +                +      LT
Sbjct: 101 SGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTEADPEPYANPELIDALT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G ++ EIA  L IS +T   ++ +IM K     R+  +     + +V
Sbjct: 161 IREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYESGLV 219


>gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E   S  + +      +  +                    GA     V   
Sbjct: 3   IRVVVADDQELVRSGFTMILEAQPDIEVVAEAGD---------------GAEAVAAVCRH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +                 +    F              
Sbjct: 48  TPDVLLLDIRMPVMDGLEAARRVCARS---------SCKVVMLTTFDLDEYVYDALYAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +      +     +      +   LT
Sbjct: 99  SGFLLKDVRRDDLVHAVRVVAGGDSLLAPTITRRLVADIVRRRREEAATGATPDRLDALT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 159 AREVEILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGLV 217


>gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 211

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G   F  VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTKEEFEIVGEAGNGEEAFTFVRTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVHQGNANFHPKITPAL-------LGRSAVKKEKENPFSMLTKREKEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 222

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 26/238 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +     S +  L +R   LA +                    GA    L + 
Sbjct: 5   PIRILLVDDHTLFRSGIRMLLSRQPELAVVGEAAD---------------GAEGVKLAKQ 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            +     LD  +      + +  +                 +   V     +        
Sbjct: 50  LMPDVVLLDLHMPGISGVEALGLLLQDNPT--------LAVVMLTVSEDADDLTAALKAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   ++  ++       ++      ++    A+      +      +  +L
Sbjct: 102 ARGYLLKNIDADFLKQSIIKAAAGESVMSEAMTAKL---MAHFRAGAPAPSQQQQELEKL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L ++++G+++ EIA  L ++ +TV  ++ +I++K    +R  A  YAV + 
Sbjct: 159 TPREREILGFLAQGQSNKEIARTLDLAESTVKIHVQNILKKLGLSSRVQAAVYAVEHG 216


>gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
 gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL
           [Paenibacillus sp. HGF5]
          Length = 219

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 20/228 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +       + +  ++  D T        +     G     L    +     +D  +
Sbjct: 7   RVLIIDDSDLAREGIRTILSSDPTFEVVAEGQS-----GEDALELTEIWMPDIILMDIQM 61

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +           ++            L + +         Y     +  
Sbjct: 62  PGMGGLEATKRVKDKF-----PYVKIVMVTVSDDIAHLFDALKR---GAQGYLLKNLNPE 113

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                L  +      + R+       LA      F  YD        LT RE E L  ++
Sbjct: 114 SWHEYLKAIAVDEAPVSRE-------LAFRILKEFSQYDKPDPSKSPLTAREKEILGLVA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG ++ +I+  L IS NTV N++ +I++K   + R     YA     +
Sbjct: 167 EGLSNRDISSDLCISENTVKNHLKNILQKLHLENRVQLTRYAFEQGWM 214


>gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 235

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 12/228 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D+L R+           ++      +G  H       L    +  +++ S +     R  
Sbjct: 7   DVLGRLDEASEPSQVLAQVSVAARQLGFEHCAYGLRTLVPFTRPKTLMFSTYDERWSRRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRI 142
             +   +    +        PV  +           +     G+   +    F+      
Sbjct: 67  ISAGYLQVDPTVAHGVHSGTPVIWSNEVFRDAPQMWDEARSFGLRVGWAQSVFEPDARVG 126

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKDFELTGREVECLTWIS 198
            L L      +   +   +  L         ++              LT R+VE L W  
Sbjct: 127 MLSLARSSEPLTAAEMRAKDLLFQGLVNKAHRAFCRLLGGPLAGIEPLTKRQVEVLRWTG 186

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKTSDEIA IL IS+ TV+ ++ + M +    T+S A A+A R  ++
Sbjct: 187 DGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASRLGLL 234


>gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 213

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    D +  +                    G     L+   
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDDGIEVVAEAGD---------------GRQAVELIPQV 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++  E        Q P  +    F      +       
Sbjct: 47  RPDVVLMDMRMPVMSGLEALQMLSRQE--------QLPPTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +A++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVTLAQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNDFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 211

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +                    G   + L    
Sbjct: 2   IKVILVDDHEMVRLGVSSYLSIQDDIEVIGEAAN---------------GLEGYHLAVEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +             +   +    F    +         
Sbjct: 47  KPDIILMDLVMDVMDGIEATQRIMQDW--------PQAKIIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   +   +++  +      LLA    +             ELT
Sbjct: 99  KSYILKTSSAKEIAEAIRETYSGEQVMDDEV--NDILLAKDIKDSQPQLHD------ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++G ++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ +V
Sbjct: 151 RREYEVLLLIAKGYSNQEIADELFITLKTVKTHVSNILAKLEVSDRTQATIYAYQHKLV 209


>gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241]
 gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241]
          Length = 211

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G   F  VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAGNGEEAFTFVRTERPDIVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVHQGNANFHPKITPAL-------LGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1]
 gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1]
          Length = 213

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     +          +D ++     
Sbjct: 4   RVLIADDHHVVRRGLVFFLKTQKDIEIVGEASNGREAVDMAGKLQPHLILMDLVMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +           ++         F      I         Y     +   +   
Sbjct: 64  IQATKLIKNQH-----PNIEIMM---LTSFSDQDHVIPAIEAGAAGYQLKDIEPDELVDS 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L      +             +        +    +  +LT RE + L  +++GK++
Sbjct: 116 IRKLVRGENSLHPKATN-------HLLKRVSRKNQPPHQIHQLTNRERDVLKELAKGKSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L I+  TV  +I++I  K     R+ A  YAV++ +
Sbjct: 169 KEIAASLYITEKTVKTHISNIFAKLEVSDRTQAALYAVKHGL 210


>gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 213

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L    D +  +                    G     L+   
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDDGIEVVAEAGD---------------GRQAVELIPQV 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++  E        Q P  +    F      +       
Sbjct: 47  RPDVVLMDMRMPVMSGLEALQVLSRQE--------QLPPTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +A++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  KGYLLKDVTLAQLVGAIRTVAEGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|294500004|ref|YP_003563704.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349941|gb|ADE70270.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 213

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q   I++  +       +  +    +    +                    G     L 
Sbjct: 1   MQPFRILIVDDHAHAREGIRDILEEYEDFIIVGEGTN---------------GQEAIELT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     +D  +      +  + +                 +   V   + +      
Sbjct: 46  EKLMPDIVLMDIGMPVMDGLEATKQIKFR--------FPYVKIVVITVSDDITDLFDALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y             L         + ++       +A      F         D 
Sbjct: 98  KGAQGYLLKNLQSEVWYDYLRAFALDEVPMSKE-------IAFQILKEFPQETSITKPDT 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  +++G ++ +I+  L IS +TV +++ +I+ K   + R    +YA +N 
Sbjct: 151 PLSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAFQNG 210

Query: 245 IV 246
           ++
Sbjct: 211 LM 212


>gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 242

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 69/223 (30%), Gaps = 16/223 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVRCMALSE 94
           +       +         E  G  +FL+    +         I++  W  +        E
Sbjct: 16  IDTARSAEAILHEFRLAMERYGLRNFLITGLPVPHGTDWQREILADGWSPEWHHRYVSEE 75

Query: 95  KDKYYNVLQRPTELFCPVFHTLP------------ENITPPAGMDNRYCSLTFDVARIRI 142
              +   + +      P                   +     GM    C           
Sbjct: 76  YFLHDPCVAQCRHSPEPFRWAELPAARLVARAKLVMDEAAEFGMKEGICVPIHVPLAGPG 135

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEG 200
            ++ +      +    +  I  L  +               +   LT RE E L W ++G
Sbjct: 136 -VVTMASDRMDVPPSAMPLIETLCVHTFRSLSGLGTPGDGYEPTPLTARERELLEWSAQG 194

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           K++D+IA ILG++RNTV ++  +I  K      + AI  A+R 
Sbjct: 195 KSTDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRR 237


>gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct]
          Length = 238

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 14/233 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            R   L  +  +     +   +  +    G   F       F          S++P +  
Sbjct: 4   EREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWK 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVAR 139
                 +      +++     + P+                    G+ + +         
Sbjct: 64  SRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYG 123

Query: 140 IRIGLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +   L L+     I   + L +      I  +         +  +    +  LT RE E 
Sbjct: 124 LISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEM 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT  EI +IL I + TV  +I + +RK  +  ++ A   A    ++
Sbjct: 184 LKWTAVGKTYGEIGLILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAIGLL 236


>gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 235

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 23/239 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + +  +I  D          +  E                +   D +
Sbjct: 8   IRVFLVDDHPHGREGMREIIGADPEFMVVGEAASGEEA----------IARIDDVLPDLV 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       +    A  +    Y  L+            L E I         Y       
Sbjct: 58  LMDINMPGMGGLEATQQLKYLYPSLKIVMVTVSDDITHLFEAIKR---GAQGYLFKNLSP 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN----------MFKSYDVHWGKDFELT 187
           +  R  L  +      + ++  + +       A+                        LT
Sbjct: 115 SAWREYLRAVVDDEAPMSKEIAFRLLQEFTSAASNGIKPAKTGSKPGHAGDASAMTTPLT 174

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G+++ EIAV  G+S +TV N++ +I++K     R     YA    ++
Sbjct: 175 AREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQLTRYAYEQGML 233


>gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 233

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 16/235 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLD 75
           +++   + H+    D       L   +        ++E   G                LD
Sbjct: 8   KRKAQTMIHILLADDHPIVREGLRAVLETQPDFEVISECASGDEVIRQAELLKPDILLLD 67

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + ++ +            Q    +    F T    I       + Y     
Sbjct: 68  LEMPIMDGVEAIKQLRQRR--------QNARIIVFTAFDTDERIIHAIQAGADGYLLKGS 119

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKDFELTGREV 191
               I   + L    G ++      ++     +     +  +        +  ELT RE+
Sbjct: 120 PRDEIFKAIRLAMEGGSLLQPLVASKL---LRHMGQRERENNYRTLQGIPRVEELTEREL 176

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G  + EIA  L IS  T   +++SIM K     R+ A+A A +  ++
Sbjct: 177 EVLRLLAQGMPNKEIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRGLI 231


>gi|320160284|ref|YP_004173508.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994137|dbj|BAJ62908.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 216

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 15/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     +  + E   G     L    +     +D I+      
Sbjct: 6   VLIVDDHSIVRAGIRTYLETQSDLEVVGEAASGKEAVQLAAELVPDVILMDLIMPEMDGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +          +  R   +    FH               Y         +   +
Sbjct: 66  EATQRVRQ--------ISPRTQVIVLTSFHEDTHIFPAIKAGALSYLLKDVSAEELGEAI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +         M  +          LT RE E L  I++G ++ 
Sbjct: 118 RAAARGEAVLHPQVAARL------VKEMRGTPAEKPNPYTALTEREQEVLKCIAQGMSNA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++++I+ K     R+ A  YA +  ++
Sbjct: 172 EIAAHLVVSEKTVKGHVSNILSKLHLADRTQAAIYAWKEGLI 213


>gi|239933765|ref|ZP_04690718.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 212

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 75/209 (35%), Gaps = 3/209 (1%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +    +  +   +  + VG +       +L +    D ++   W  ++    A     + 
Sbjct: 2   VRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVWMPEMDGLEAARRLLEP 61

Query: 99  YNVL-QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
              +  RP  L    F              + +       A +   + ++     ++   
Sbjct: 62  APGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKNAPPADLIAAVRVVASGDALLAPS 121

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
               +  +A +             +   LT RE E LT ++ G+++ EIA  L ++  TV
Sbjct: 122 VTRRL--IADFAKQRPAVRGKPALRLKGLTERETEVLTLVARGQSNGEIAQTLVLAEQTV 179

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++ ++ K   + R+ A+ +A  + +V
Sbjct: 180 KTHVSRVLTKLDLRDRAQAVVFAYESGLV 208


>gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
 gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596]
          Length = 212

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G     +    
Sbjct: 2   IKVLLVDDHEMVRIGVSAYLSVQDDMEVIGEAEN---------------GRQGADMALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +            +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKEIMQKW--------KEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++            +         +LT
Sbjct: 99  SSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL--------TAKPEKNLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 240

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 75/241 (31%), Gaps = 23/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D           ++    M  + +   G     +   +      +D  + + 
Sbjct: 6   VIRVAIADDQELVRAGFAMVINSQKDMQVVAQASNGNEIVEVASKENPDVILMDVRMPNM 65

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +   + +           +    F      +       + +     +   + 
Sbjct: 66  DGLEATRKILQEDANSN------THIIILTTFDLDEYVMAAIHTGASGFLLKDTEPETLL 119

Query: 142 IGLMLLFPKGRIILRDRLWEIGL----------LAAYQANMFKSYDVHWGKDF------E 185
             +  ++    II       +            +A+ + N   +       +       +
Sbjct: 120 NSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASEEENTENASRSKQNANAYNSYLND 179

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 180 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENGL 239

Query: 246 V 246
           V
Sbjct: 240 V 240


>gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
 gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC
           27678]
          Length = 248

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 23/253 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ E   R              A +I     +    +        GA    L        
Sbjct: 1   MSEEQRIRVIIADDQELVRAGFAMVIGSQPDMMVAGQAR-----DGAEAVALAETLHPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL----QRPTELFCPVFHTLPENITPPAGMD 127
             +D  +      +  R ++  +            +R   +    F      +       
Sbjct: 56  VLMDVRMPGMDGIEATRQISSLQHRFAATGAQTGPRRTRVIILTTFDLDEYVMAAINAGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------------GLLAAYQANMF 173
           + +     +   +   +  +F    II       +                + A      
Sbjct: 116 SGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLTIPASADTAP 175

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +  ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R
Sbjct: 176 SRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDR 235

Query: 234 SGAIAYAVRNNIV 246
             A+ +A  N++V
Sbjct: 236 VQAVVFAYENHLV 248


>gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 212

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     VS   +  + +  +   +                G+    L    
Sbjct: 2   IRVLFVDDHEMVRIGVSAYLSSQEDIQVVGEAED---------------GSEAIGLALTL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMKKMDGIEATRNIIEKW--------PEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +        I+  +   ++                      ELT
Sbjct: 99  TSYMLKTSKASDIADAIRKTHGGQSILEPEVTGKM----------MSRMRKPSHPHEELT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++EGKT+ EI   L I+  TV  ++++I+ K   + R+ A+ YA ++++V
Sbjct: 149 NREMEILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQDRTQAVIYAFQHSLV 207


>gi|182438916|ref|YP_001826635.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779572|ref|ZP_08238837.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178467432|dbj|BAG21952.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659905|gb|EGE44751.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 229

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 9/229 (3%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++     +             G     + R        +D  
Sbjct: 3   IRVIIVDDQAMVRAGFAALLSAQSDIDVVGEA-----ADGRQGVDVSRNQHPDVVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +     +    V+ RP  L    F              + +       
Sbjct: 58  MPEMDGLAAAREL----LNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++       +    A Q     +      +   LT RE E L  I
Sbjct: 114 ADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPSGATRGGQALRRHGLTPRESEVLELI 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 174 ARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 222


>gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 221

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 77/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +S        L  +   +                G     +   D
Sbjct: 2   IKVLIVDDHEMVRLGLSTYIGVQPDLEVVDQAEN---------------GQEGVEMALKD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +          +   +    F    +         
Sbjct: 47  RPDIILMDLVMPVKDGIEATKEILKAW--------PQARIIILTSFIDDAKVYPAMEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++      ++              +    +  ELT
Sbjct: 99  ASYILKTATAEEIAKAIRQTASGERVLEPQVTTKM----------MNRMNHPQSQYDELT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 149 NREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207


>gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 252

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            RE+  R   V         L  ++  +  +          E V  +  LL         
Sbjct: 31  AREEPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGDGAEAVEKAADLL-----PDIV 85

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +    +          V      +   +     +           Y  
Sbjct: 86  LMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKAGATGYLL 137

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +      I      ++  L  +++ + ++ +        LT RE+E
Sbjct: 138 KEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPRLTDRELE 195

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 196 VLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 249


>gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 211

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTKEEFEIIGEAENGEEALAFVRKERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKR-----LKQYDATIKILMLSS---FSEQDYVLPAMEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +              +        LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------LGRPAVKEEKKDSFSMLTKREKEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TV  ++++++ K     R+ A  YAV+N +V
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGVV 211


>gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae]
          Length = 239

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D    ++      +W   +    + +G S  L       + Q   + + S++P       
Sbjct: 5   DECIELLSAMDARTWFQSLVLSVQKLGYSQVLYALKPNKEAQNSTARIMSNFPDAWRDLY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARI 140
                     V+        P+                     AG+ +            
Sbjct: 65  DNENYSSIDPVVSHSFSSSLPILWEDKLYKTRREKEFAEDARRAGLSHGLTLPIHGPQGQ 124

Query: 141 RIGLMLLFP-----KGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVEC 193
              L L        +   +L+  +    +L  Y      S            LT RE+E 
Sbjct: 125 VGMLSLSCAPMPQNEYLQVLQHSIAAASMLRDYAVTSGSSLFLHNSSSTAPHLTPRELEI 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W    KT+ EI  IL ++  TV  +  +I RK    +R  A+A A++ +++
Sbjct: 185 LHWAWAEKTTWEIGKILSLAEPTVEFHFKNIRRKLNVSSRRLAVARAIQLDLM 237


>gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R                ++  +  +    +        GA     V         +D  
Sbjct: 5   IRVLIADDQMMVRQGFTVLLNAEPDIEVVGQA-----VDGADAIDQVAELAPDVVLMDIR 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 L    F              + +       
Sbjct: 60  MPGVGGIEATRRLTE-------PAGATVKILVLTTFDLDEYVYEALRAGASGFLLKDASA 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++     ++  +    +    +   +          +  +LT RE E LT I
Sbjct: 113 DELAHAVRVVAAGDALLAPNITKRLIGEFSRV-SAAAPRGPLRDRVGDLTERETEVLTLI 171

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++  TV  +++ I+ K   + R+ A  +A    +V
Sbjct: 172 AQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYETGLV 220


>gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103]
 gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103]
 gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis
           AJ13355]
          Length = 240

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 74/226 (32%), Gaps = 15/226 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
               L  T      +    + +G  +F           +    +   +P   ++      
Sbjct: 16  HFQALATTQQLKGLLQDYIQSLGFDYFAFFIQHRVPFTRPRVYLHDTYPKLWIKRYKEQN 75

Query: 95  KDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                 VLQ        V  T                 G+ + +        R    ++ 
Sbjct: 76  YYAIDPVLQLCLRSGKGVEWTPELFSSAKEMWQDACNFGLLSGFSCSAMASNRAVG-ILS 134

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF------ELTGREVECLTWISEG 200
           +  K   I   R  E+ +   + A    S       +       + + RE+E L W +EG
Sbjct: 135 IGSKRPFITGSRRVELEVKLHFLAEQSLSLLERLNDEALMVQGNDFSQRELEILRWTAEG 194

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KTS EI++IL IS +TVN Y  ++ ++     ++    YA    ++
Sbjct: 195 KTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYAAAIGLI 240


>gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. W3110]
 gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA
 gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12
           substr. W3110]
 gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952]
 gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1]
          Length = 240

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 EDL933]
 gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196]
 gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113]
 gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401]
 gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486]
 gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869]
 gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508]
 gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206]
 gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045]
 gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042]
 gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115]
 gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli]
 gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588]
 gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7
           str. TW14359]
 gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. 493-89]
 gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1044]
 gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. 1125]
          Length = 240

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|29827472|ref|NP_822106.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604571|dbj|BAC68641.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   V     + A +E   G     L R D      +D  +     
Sbjct: 13  RVLIADDQALLRGSLRVLVDTEPGLVATSEAATGTEAVRLARQDPPDVVLMDVRMPEMDG 72

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L   +F              + +       + +   
Sbjct: 73  IEATRQI------CGSPETADVKVLILTMFDLDEYVYAALRAGASGFLLKDTPPSELLAA 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A +     +           +T RE E LT I+ G ++
Sbjct: 127 VRVIAAGEALLAPAVTRRL--IAEFVH-RPEPSRPLRRTLDGVTEREREVLTLIACGLSN 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  +++ ++ K AT+ R+  +  A  + +V
Sbjct: 184 TEIAERLYLGIATVKTHVSHLLTKLATRDRAQLVIVAYESGLV 226


>gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 79/233 (33%), Gaps = 18/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---FQEQKLDSIVSSDWPFDLV 87
           ++L  +            +      +G  + +     L       + + ++  +   +  
Sbjct: 11  EILKSLDRAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWN 70

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLT 134
           R            V+Q           +                N     G+ + +    
Sbjct: 71  RLYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPL 130

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVEC 193
             +   R GL    P+   I   +   + LLA+Y        D     +   LT RE E 
Sbjct: 131 ATLEEERGGLTFAGPR-LDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERES 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 190 LQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 216

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  +     G     L          +D  +     
Sbjct: 3   RILLVDDQTLVRQGIQTLLDLEEDLTVVGAAANGQQALELAEQLQPDVVLMDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F      I         Y     D   I   
Sbjct: 63  VAATREITRRWPQIG--------VIILTTFDDDEYVIEGLKAGARGYMLKDADSHEIVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     +I      ++  LA +         V       LT RE++ L  I+ GK++
Sbjct: 115 VRIVTRGEALIQPSITRKV--LAEFTRLAGGHTPVTSPLTEPLTEREMDVLHGIAAGKSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV N+++S++ K   + R+ AI  A    ++
Sbjct: 173 REIADQLCISEGTVKNHVSSLLAKLDVRDRTQAIIRARELRLI 215


>gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262]
 gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262]
 gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL
           F2-208]
 gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378]
          Length = 212

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G     +    
Sbjct: 2   IKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAEN---------------GREGADMALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +         +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKEIMKNW--------KEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++            +         +LT
Sbjct: 99  SSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL--------TAKPEKNLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|262203966|ref|YP_003275174.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087313|gb|ACY23281.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 22/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S    L    D +  +                    GA    L R  
Sbjct: 5   IRVLLADDQPLVRSGFGALLDAEDDIDVIAQAGD---------------GAEAIELARSH 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +  +        L     L    F          A   
Sbjct: 50  HPDVAILDIRMPGTDGLTATRTITAN------PDLAEVKVLILTTFELDEYVFEAVAAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFEL 186
           + +         +   + ++     ++       +    A    +         G    L
Sbjct: 104 SGFLVKHTQPEELVRAVRVIAAGDALLSPSVTRRLISRFADAGRSPTTPVTPGGGPVSAL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E +  +++G +++EIA    +S  TV  +++  M K   + R+  + +A R  +
Sbjct: 164 TERETEVVRLVADGLSNEEIAQRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYRLGL 222


>gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 16/230 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHF---LLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +  +            +  L    G +     ++        +    I+   +P   +  
Sbjct: 1   MEAVEQTRTAAEIEDCLLGLAAEFGFTGLFGGIVPTRPAPLAELRSRILFQRFPAQWLDR 60

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFD 136
            +         ++Q       P                 L +      G+ + Y      
Sbjct: 61  YSRKGYVFRDPIIQHLFHERTPFTWHEGYKSCPQRSNVRLIQGEAAEFGLRDGYVVPIST 120

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +    + L    P       D        +                +  LT RE +CL W
Sbjct: 121 IDGEIVSLSFGGPGTLPASADLSVLNFAASYALGRHLHRIATWRRVNSNLTAREWDCLLW 180

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EGKT+ EI+ ILGIS++TV  +I +   K    +++ AIA A+R  ++
Sbjct: 181 AGEGKTNWEISAILGISKSTVTKHIMAARAKLGAVSKAHAIAMAIRTKLL 230


>gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 211

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +  +                    G+    L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASD---------------GSEGVRLAAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         + +                 +    F    +         
Sbjct: 47  SPDVILMDLVMEGMDGIQATKQICREL---SDP-----KIIVLTSFIDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +         +           A    +  +    +      LT
Sbjct: 99  LSYLLKTSKAAEIADAIRAASKGEPKLESKV-------AGKVLSRLRHSGENELPHESLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 152 KRELEILFLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 210


>gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPENIT------------PPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N                  + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAAQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 140 NARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 200 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 75/222 (33%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +    E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQMLVRTGLVTIIDAQPDLEVAGECGDGRTAVDLAGRLRPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +              L    F+             + +       +++  G
Sbjct: 66  IEATRLLAGAGVPH------PVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPSQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +  +    +D  LT RE+E L  I++G ++
Sbjct: 120 IRTVAMGAALLDPEVTRQL---VGRYAARIRPVEDGAPRDLPLTPRELEVLRLIADGLSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L IS+ TV  +++ I+ K   + R  A+ YA R  +
Sbjct: 177 SEIAAALLISQETVKTFVSRILAKLGLRDRVQAVVYAYRRGL 218


>gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e]
 gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes Finland 1988]
 gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes FSL R2-561]
 gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S]
 gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161]
 gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e]
 gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Listeria monocytogenes HCC23]
 gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes
           L99]
 gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120]
 gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str.
           Scott A]
          Length = 212

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G     +    
Sbjct: 2   IKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAEN---------------GREGADMALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +         +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKEIMQNW--------KEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++            +         +LT
Sbjct: 99  SSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL--------TAKPEKNLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|311895893|dbj|BAJ28301.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 11/229 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++     +             G                +D  
Sbjct: 3   IRVLIVDDQAMVRAGFAALLNAQSDIDVVGDA-----ADGRQAVEASGRTHPDVVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +     D       RP  L    F              + +       
Sbjct: 58  MPEMDGLEAARRL----LDPPPGTAHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++       +  +A +  N          +   LT RE E L  I
Sbjct: 114 ADLIAAVRVVAAGDALLAPSVTRRL--IADFARNRPAPRRDPRLRLNGLTPRETEVLELI 171

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L ++  TV  ++  I+ K   + R+ A+  A  + +V
Sbjct: 172 ARGLSNQEIAAHLVLAEQTVKTHVGRILGKLDLRDRAQAVVLAYESGLV 220


>gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas fluorescens]
          Length = 241

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 15/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DL   M+ L  +      +    +Y+G   +           +  + +   +P   +   
Sbjct: 13  DLRMEMLKLQESAQVFALLEREVQYLGFDFYAYGIRHSIPFTRPKTEIYGSYPQPWMERY 72

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
                      +         V                    G+               +
Sbjct: 73  QQQNYAAIDPSILNGLRSTEMVVWNDVLFGKGSVLWGEAQDWGLRVGATVPIRTPDG-AL 131

Query: 143 GLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYD--VHWGKDFELTGREVECLTW 196
            ++ +  +   I       I L    +    A                EL+ RE E L W
Sbjct: 132 SVLSVARRNTAISAVEREVIRLRLRCIIELAAGRLSELGHSNTQSDPQELSAREREILQW 191

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++GK+S EIA+ILGIS NTVN ++  I +K     ++ A AYA    ++
Sbjct: 192 TADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241


>gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens
           PA1]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 78/233 (33%), Gaps = 18/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---FQEQKLDSIVSSDWPFDLV 87
           ++L  +            +      +G  + +     L       + + ++  +   +  
Sbjct: 11  EILKSLDRAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWN 70

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLT 134
           R            V+Q           +                N     G+ + +    
Sbjct: 71  RLYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPL 130

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVEC 193
             +   R GL    P    I   +   + LLA+Y        D     +   LT RE E 
Sbjct: 131 ATLEEERGGLTFAGP-QLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERES 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W++EGKT  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 190 LQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242


>gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 239

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  LLA +  +         +      +G  ++  V        +   +  S++P     
Sbjct: 5   RESLLASLEQVKTASEAFDNLAPAVRALGFEYYAYVLRITIPITRPAIMGWSNYPEAWRT 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIR 141
                +      VL        P+                   G+   +   T D     
Sbjct: 65  HYTQRDYQHADPVLHYGQACTRPMPWPGPLPGYDAFWRDAAAFGLCYGWSQTTRDHRGAM 124

Query: 142 IGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLT 195
             + L+     I   +      E+     +      +    DV       L+ RE + L 
Sbjct: 125 GTVSLVRGGPPIAPDELRRTEPEMIWFCQFVHATMSNLIVSDVMPSGAMRLSLREKQVLH 184

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKT+ E+AVIL +S   V  +I + + K     ++ A   A    ++
Sbjct: 185 WTAEGKTAAEVAVILQLSERNVGFHIQNAIDKLDAANKTHATVKAAMLGLI 235


>gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola]
 gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        ++ K   I+ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFTTPKARKAKP--IILSNYPDSWLKSYIASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWIS 198
             K        +RD+  +I +      +                + +L+ RE + L W++
Sbjct: 140 NAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTANCKLSSRETDILKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK   EIA I  IS  TV  +++++  K   +T   A+  A++  +V
Sbjct: 200 MGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 219

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +  + E   G +   L      +   +D  +     
Sbjct: 6   RVLVCDDQVLVRTGLVTIIDAQPDLEVVGECEDGQAAVDLAGRLRPEVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +              L    F+             + +       +++  G
Sbjct: 66  IEATRLLAGAGVPH------PVKVLVVTTFNLDKYVYEALRAGASGFLLKEAPPSQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +           +  +    +D  LT RE+E L  I++G ++
Sbjct: 120 IRTVATGAALLDPEVTRRL---VGTYVARIRPAED-TSRDIPLTPRELEVLRLIADGFSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 176 SEIAAALQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218


>gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           K40]
 gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        ++ K   I+ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGEFTYAYFTTPKARKAKP--IILSNYPDSWLKSYIASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWIS 198
             K        +RD+  +I +      +                + +L+ RE + L W++
Sbjct: 140 NAKQQHDFDQRIRDKTADIQMSLIRFHDRLIKTRAPHELFPPTANCKLSSRETDILKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK   EIA I  IS  TV  +++++  K   +T   A+  A++  +V
Sbjct: 200 MGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H7 str. G5101]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQSLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           EC4100B]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVN 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|290954729|ref|YP_003485911.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644255|emb|CBG67336.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 75/224 (33%), Gaps = 7/224 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           ++    +  + E   GA    L R        +D  +    
Sbjct: 3   TRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +     +    V  RP  L    F              + +       A +  
Sbjct: 63  GLEAARRL----LEPAPGVTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++     ++       +  +A +             +   LT RE E LT ++ G++
Sbjct: 119 AVRVVASGDALLAPSVTRRL--IADFARQRPAVRGKPALRLKRLTERETEVLTLVARGQS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 177 NGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESGLV 220


>gi|21224466|ref|NP_630245.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256784341|ref|ZP_05522772.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289768220|ref|ZP_06527598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|4007689|emb|CAA22374.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289698419|gb|EFD65848.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 219

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 11/218 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       L   V     +  + E   G +   L R        +D  +      +  R
Sbjct: 11  DDQALIRTGLATIVDAQPDLEVVGECGDGQTGVDLARELRPDVVVMDIRMPVLDGLEATR 70

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A +       V      L    F+             + +        R+  G+  + 
Sbjct: 71  LLAGAG------VAHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPDRLLHGIRTVA 124

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  D    +       A   +  +    +D  LT RE E L  I++G ++ EIA 
Sbjct: 125 MGAALLDPDVTRRL---VGRYAARIRPAEGTA-RDIPLTPRETEVLRLIADGLSNSEIAA 180

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  +++ I+ K   + R  A+ +A R+ +V
Sbjct: 181 ALVISPETVKTFVSRILTKLDLRDRVQAVVFAYRHGLV 218


>gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
 gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC
           14019]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 75/241 (31%), Gaps = 23/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D           ++    M  + +   G     +   +      +D  + + 
Sbjct: 9   VIRVAIADDQELVRAGFAMVINSQKDMQVVAQASNGNEIVEVASKENPDVILMDVRMPNM 68

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +   + +           +    F      +       + +     +   + 
Sbjct: 69  DGLEATRKILQEDANSN------THIIILTTFDLDEYVMAAIHTGASGFLLKDTEPETLL 122

Query: 142 IGLMLLFPKGRIILRDRLWEIGL----------LAAYQANMFKSYDVHWGKDF------E 185
             +  ++    II       +            +A+ + N   +       +       +
Sbjct: 123 NSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASEEENTENASRSKQNANAYNSYLND 182

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 183 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENGL 242

Query: 246 V 246
           V
Sbjct: 243 V 243


>gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023]
          Length = 212

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G     +    
Sbjct: 2   IKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAEN---------------GREGADMALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +         +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKEIMKNW--------KEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++      +       D        LT
Sbjct: 99  SSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKKLHDD--------LT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 74/251 (29%), Gaps = 30/251 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E+ Q  I +  + E     +  +    D    +                    G     
Sbjct: 1   MEMTQTRIAIVDDHELFREGLKRIFDLEDEFTVVAEGRT---------------GREAIR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +      +   +D  +      +  + ++L               L   +          
Sbjct: 46  IAGEQKPEILIMDINMPDMNGIEATKQLSLLS--------PETRVLILSIHDDESYITHA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKS 175
                + +         +   +  +   G  +              +      QA     
Sbjct: 98  LEAGASGFLLKEVASTELISAVRAVAKDGAYLHPKVTTNVLKEYRRLLQFKGEQAGRGVE 157

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ REVE L  +++G+++ +I+ +L IS  TV N+++S++RK     R+ 
Sbjct: 158 SRTDDPVYQLLSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQ 217

Query: 236 AIAYAVRNNIV 246
           A+  A+R   V
Sbjct: 218 AVVDAIRRGWV 228


>gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 269

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + +++  +       +  +  + + +  +                    GA      
Sbjct: 50  AEPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKA 94

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +    +          V      +   +     +      
Sbjct: 95  ADLLPDIVLMDVRMPRRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIK 146

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      I      ++  L  +++ + ++ +       
Sbjct: 147 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAP 204

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  
Sbjct: 205 RLTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREK 264

Query: 245 IV 246
           I+
Sbjct: 265 IL 266


>gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
          Length = 210

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M      +G  +        F       ++ S++P         +        ++     
Sbjct: 1   MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60

Query: 109 FCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
             PV  + P               G+ + + S +         L L   +  I   ++  
Sbjct: 61  DLPVTWSAPANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDTAEKFR 120

Query: 161 E---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               +  LA         +     + D +LT RE + L W ++GKT+ EIA+IL IS +T
Sbjct: 121 NESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISEST 180

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN ++ +I+ K  +  +  A+A A    ++
Sbjct: 181 VNFHVKNIVSKLGSTNKIQAVAKAALMGML 210


>gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 253

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 74/240 (30%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +    + +  +                    GA        
Sbjct: 36  PIRVLVVDDHALFRRGLEIVLAHEEGIEVVGEAGD---------------GAEAVDKAAD 80

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     +D  +      +    +          V      +   +     +        
Sbjct: 81  LLPDIVLMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKAG 132

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +      I      ++  L  +++ + ++ +        L
Sbjct: 133 ATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPRL 190

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 191 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 250


>gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp.
           4_1_40B]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L R        +D  +     
Sbjct: 6   RVLVCDDQALIRTGFATIIDAQPGLEVVGECGDGRTAVDLARRLNPDIVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +       V      L    F+             + +       A++  G
Sbjct: 66  IEATRRLAGAGV--ADPV----KVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +        +  LT RE+E L  I++G ++
Sbjct: 120 IRTVATGAALLAPEVTRQL---VGRYAARIRPAQA-TPAETALTPRELEVLRLIADGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R  +V
Sbjct: 176 SEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218


>gi|56964850|ref|YP_176581.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus clausii KSM-K16]
 gi|56911093|dbj|BAD65620.1| two-component response regulator of extracellular degradative
           enzyme [Bacillus clausii KSM-K16]
          Length = 235

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 77/251 (30%), Gaps = 31/251 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q++ IV+  +       V  + +  +    +   +                G+    L
Sbjct: 5   ETQEIRIVIIDDHPLFKEGVKRILSMEENFNVVADGED---------------GSEVIDL 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           VR        +D  +      +  + +             +   +   +           
Sbjct: 50  VRQHQPDVILMDINMPKTNGVEATKDLIK--------AFPKVKVIILSIHDDESYVSHVL 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-- 181
               + Y     D   +   + ++   G  I       +       A   + Y    G  
Sbjct: 102 RTGASGYLLKEMDAESLVEAVKVVASGGAYIHPKVTSNLIKEYRRLARQDEQYQDSIGFR 161

Query: 182 ------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     LT RE E L  +++G+ +  I   L IS  TV N++++I++K     R+ 
Sbjct: 162 EVEYRKPLHILTRRECEVLQLMTDGQNNRAIGESLYISEKTVKNHVSNILQKMNVNDRTQ 221

Query: 236 AIAYAVRNNIV 246
           A+  +++   V
Sbjct: 222 AVVESIKKGYV 232


>gi|328883924|emb|CCA57163.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 222

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 11/227 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +     M  + E   G     LV         +D  +   
Sbjct: 1   MTTVLIADDQPMQRFGFRMLLESQDDMTVVGEASNGTEAVRLVDRHHPDVVLMDIRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGIEATRRIITTG--------ARTRVLIVTTFDLDEYAYDGLRAGASGFLVKDAQPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            G+  +     ++       +    +     +     D    +   LT RE E LT I +
Sbjct: 113 AGIRAVASGDAVVAPSLTRRLLDAYIHHLPQSPTADPDPEDPRLATLTEREREILTVIGQ 172

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ EIA  L ++ +TV  ++  I+ KT  + R  A+  A    +V
Sbjct: 173 GWTNTEIAERLHLAESTVKTHVGRILAKTGARDRVQAVILAYDTQLV 219


>gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067]
 gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171]
          Length = 212

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G     +    
Sbjct: 2   IKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAEN---------------GRQGADMALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +         +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKEIMQNW--------KEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++            +         +LT
Sbjct: 99  SSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL--------TAKPEKNLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 223

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G      VR        +D  +     
Sbjct: 4   RVLLVDDQPLLRTGFRMILEAESDLVVVGEAGDGQQALDQVRALQPDVVLMDIRMPRMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A  ++D           L    F      +       + +         +   
Sbjct: 64  VEATRRIAGPDRDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDVPAEELVQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  L  Y   +    +        LT REVE L  ++ G ++
Sbjct: 118 IRVVADGAAMLAPSVTRRL--LDMYATKLPSGDEAPPQALTVLTEREVEVLRLVARGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 176 AEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESGLV 218


>gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 212

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G     +    
Sbjct: 2   IKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAEN---------------GREGADMALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +            +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKEIMQKW--------KEAKIIIVTSFIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++            +         +LT
Sbjct: 99  SSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL--------TAKPEKNLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209


>gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 207

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 33/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +VL  +       +  L +  + L  +       S+   +                 + 
Sbjct: 3   KVVLVDDHHIVRQGLEFLLSTVEDLEVVKGFSDGQSFLSFLKE--------------NEQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD ++      ++          K Y  ++         +      I+      +
Sbjct: 49  PDIVLLDLVMPEMNGIEITEI-----LKKQYPQIKVL---VLTSYVDDEHVISAIDKGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   +  +    RII  +    I  ++                  +L+ 
Sbjct: 101 GYEMKDVEPQKLIETIHKVLNGERIIHPEAKNVIEAVSKKPHF-----------TNKLSK 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 150 REVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207


>gi|269925421|ref|YP_003322044.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789081|gb|ACZ41222.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 224

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 70/243 (28%), Gaps = 34/243 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLV 64
           + + +V+  +          L  +                   +  + E   G     L 
Sbjct: 10  EAIRVVIAEDHALVREGTKELLEK-----------------RGIRVIGEASNGEEAVELA 52

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      D  + +     +           L    +           
Sbjct: 53  QKLQPDLILMDVSMPKLNGIDATKIIKQKHPNI--------AVLVLSAYDDDQYVFALLQ 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKD 183
                Y         +   +  +     ++          +A    + F           
Sbjct: 105 AGAAGYILKDAHADEVVNAVKAVANGESVLAPS-------IAKKVLSRFTSPSTQPEHPS 157

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L   ++G+++  IA  L +S  TV  ++++I  K    +R+ A+ +A++ 
Sbjct: 158 PVLTDRELDVLRLAAKGESNKAIAQQLHLSPRTVQVHLSNIFNKFGVASRTEAVLHALKL 217

Query: 244 NIV 246
            ++
Sbjct: 218 GLI 220


>gi|134098288|ref|YP_001103949.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004292|ref|ZP_06562265.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910911|emb|CAM01024.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 8/222 (3%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           ++    M  + E   G     L          +D  +      
Sbjct: 5   VLVVDDQAMVRAGFAALLAAQPDMEVVGEADDGERGVALSHEHGPDVVLMDVRMPVLNGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +          +   P  L    F              + +       A +  G+
Sbjct: 65  EATRRLLDPPAH----ITHVPRVLMLTTFDIDDYVYEALRAGASGFLLKDALPADLIAGV 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +     + +        +  +   LT RE E L  ++ G ++ 
Sbjct: 121 RVVAGGQALLAPTVTRRLI---EHFSRTAAPPITNPPRLDVLTDREREVLVHVARGLSNT 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TV ++++ I+ K   + R  A+  A    +V
Sbjct: 178 EIADALFIAEQTVKSHVSRILGKLGVRDRVQAVVVAYETGLV 219


>gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli
           AAC00-1]
 gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli]
          Length = 242

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 19/236 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV----RWDLFQEQKLDS-IVSSDWPF 84
            D + R                    +G  HF L     R D     +    ++S ++P 
Sbjct: 4   RDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPS 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLT 134
             V             V +   +   P                 +    AG+ +      
Sbjct: 64  RWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPI 123

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN----MFKSYDVHWGKDFELTGRE 190
            +         +   +   +  D       L           F +         +LT RE
Sbjct: 124 HEPGGRIFLATVASHQQLTLGNDACVRTYALVTAFHALYTMRFATEQTQIPTAVKLTSRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECLTW++ GK+S EI  I+ IS +TVN ++ + M K  T +R  A   A    ++
Sbjct: 184 AECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239


>gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis]
          Length = 248

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 27/251 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               V+HL      LA            + +  L E+    ++ LVR     +  +  ++
Sbjct: 1   MRVSVNHLIQ---FLAVSQGCRSREELILELEKLLEFYKFDYYGLVRSPKPDQNPMSLVL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT----------------LPENITP 122
           +  WP    +     +       ++   +   P   +                       
Sbjct: 58  AGRWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMMMDAQ 117

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV---- 178
             G++  Y         + +  M +  +   +    +     +A          +     
Sbjct: 118 RFGLEEGYIFPIHGRGGL-LANMTIGGRSVELTPIEIMLFDTVAKCAFWRLAEINGEDEL 176

Query: 179 ---HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  D  LT RE+E L ++ EG TS+E++ +L IS +TV+ Y+  +  K   K R  
Sbjct: 177 LSMVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQH 236

Query: 236 AIAYAVRNNIV 246
            +A A R  ++
Sbjct: 237 MVAIAYRLGLI 247


>gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 246

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 75/238 (31%), Gaps = 24/238 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           LL  +   +   +    + ++        + L+R        +  +++  WP        
Sbjct: 9   LLVVVEECNQPKNVVTELESVLRSYKFDFYGLLRHPRPAVDIVSVMLAGRWPDKWPLTYV 68

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENI----------------TPPAGMDNRYCSLTF 135
             +       ++   +   P                             G+ + Y    F
Sbjct: 69  ARKYVLVDPTMRYLGQAQRPFRWRDAMAALKGDPLRRRMEQMMADARANGLVDGYIFPIF 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-------DFELTG 188
             + +   +  +      +    L     +A                       + +LT 
Sbjct: 129 GRSGLLGTM-TIGGNSVDLSPAELSLFDAVAKKVFWRLLELRDEARPLEEAPAIEAKLTR 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  ++EG TS +I+  L IS +TV+ Y+ SI  K   + R   +A A RN +V
Sbjct: 188 REIEVLNHLAEGMTSMDISRTLKISNHTVDWYMNSIQDKLNARNRQHIVAIAFRNGLV 245


>gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 219

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +    E   G +   L          +D  +     
Sbjct: 6   RVLICDDQVLIRTGLSTIIDAQPDLEVAGECGDGRAAVDLAAKLRPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +              L    F+               +       +++  G
Sbjct: 66  IEATRLLAGAGVPH------PVKVLVVTTFNLDEYVYEALRAGAGGFLLKDAPPSQLLQG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +       +D  LT RE+E L  I++G ++
Sbjct: 120 IRTVAAGAALLDPEVTRQL---VGRYAARIRPTGDAA-RDIPLTPRELEVLRLIADGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L ISR TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 176 NEIAAALVISRETVKTFVSRILTKLGLRDRVQAVIYAYRQGLV 218


>gi|239940914|ref|ZP_04692851.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987390|ref|ZP_04708054.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 229

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 9/229 (3%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++     +             G     + R        +D  
Sbjct: 3   IRVIIVDDQAMVRAGFAALLAAQSDIDVVGEA-----ADGRQGVDVSRNHHPDVVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +     +    V+ RP  L    F              + +       
Sbjct: 58  MPEMDGLAAAREL----LNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++       +    A Q     +      +   LT RE E L  I
Sbjct: 114 ADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALRLNGLTPRESEVLELI 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 174 ARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 222


>gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 215

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      ++ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEALTFIQTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHEGNANFHPKVTPAL-------FGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 209

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G   F  VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEAFTFVRTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +           +S          LT RE E L  I++G+++ 
Sbjct: 117 VAVHQGNANFHPKITPALL---------GRSAVKKENPFSMLTKREQEVLREIAKGRSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 168 EIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 229

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 17/238 (7%)

Query: 12  LNRED---EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           + RED     R           + +  ++ L   +             G     LV    
Sbjct: 1   MTREDGKKPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGD-----GDEAVKLVAELA 55

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R +                 +    F               
Sbjct: 56  PDVVLMDLRMPRCDGVEATRRIRTEHPGTQ--------VVVLTTFADDDSLFPALRAGAR 107

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +       I   +  +      +       +    +       +       D  LT 
Sbjct: 108 GYLTKDAGGDEIVRAVESVLSGEAGLAPSIQRRLLEHLSEPEPEPWATPADQAPD-GLTA 166

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E +  I+EG ++ EIA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 167 RECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYAKGLV 224


>gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 215

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 20/230 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           + R   V   P   + +  ++  D +              G          +     +D 
Sbjct: 2   KVRVLVVDDHPHAREAIGEILAEDDSFEIVAYAE-----DGDEAIAQTERWMPDLILMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R + L      Y  ++            L E           Y     +
Sbjct: 57  RMPGKDGLETTREIKL-----RYPYVKIVLITVSDDAAHLFE---ALKQGAQGYLLKNLE 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                  L  +      +  +       LA      F       G+   LT RE E L W
Sbjct: 109 PGTWLEYLRAIASDEAPLSSE-------LALRILQEFPVNRRTSGEQPPLTAREREILGW 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G T+ EIA +L IS  TV N++ +I++K   + R     YA+    +
Sbjct: 162 VAQGMTNREIAGVLHISDQTVKNHLKNILQKLHLENRVQLTRYALEQGWI 211


>gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 233

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 14/231 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V   P   D +AR    +            T   G       +        L
Sbjct: 14  DRPIRVMVVDDHPMWRDAVAR-DLTESGFDVV-----ATAGDGPQAVRRAKAVSPDVLVL 67

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       + + +  S              L         + +         Y   +
Sbjct: 68  DLNLPGMPGVQVCKELVGSH--------PGLRVLVLSASGEHADVLEAVKSGATGYLLKS 119

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +        +        +       A+          K  +LT RE E L
Sbjct: 120 ASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQLTDRETEVL 179

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 180 RLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230


>gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 214

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 70/227 (30%), Gaps = 17/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
               +  +    D       L   +     +  + E   GA               +D  
Sbjct: 1   MADKIIKVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARTEELRPDVVLMDIK 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +   E             L    F      +       + Y     D 
Sbjct: 61  MPGTDGIEALRRLRELENP--------ARVLIVTSFTEQRTVVPALRAGASGYVYKDVDP 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++  +    +           +      G+   LT RE E L  I
Sbjct: 113 DALAGAIRSVHAGHVLLQPEVAGALL--------AQEDTGNGTGRGSTLTEREREVLGLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 165 ADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211


>gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 226

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 81/242 (33%), Gaps = 27/242 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       VSH  +    L  +                    G +   LV   
Sbjct: 3   IKVLLVDDHPLFRQGVSHALSNFPDLEVVGEASD---------------GQAAIRLVDKL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     +           +   +     +         
Sbjct: 48  SPDVVVVDINLEGLNGLEATRVIRRRYPN--------VGVVILTMHEDDEQLFNAIKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---F 184
             Y +      R+   +  +     II  + + +   +A+     F+       ++    
Sbjct: 100 AAYVTKDTSPDRLVDIIRRVGKGEYIINENLITK-PFVASRVLKQFRDLAALEDEENLFT 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REVE L  I+ G ++ EIA  + IS  TV N+I SI+RK A   R+ A+ YA++  
Sbjct: 159 PLTSREVEILDCIARGMSNKEIARQMSISDQTVKNHITSILRKLAVNDRTQAVIYALKRG 218

Query: 245 IV 246
            +
Sbjct: 219 WI 220


>gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 213

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILMLSS---FSEQDYVLPALEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVYQGNANFHPKVTPAL-------LGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14]
          Length = 207

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 33/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +VL  +       +  L +  D L  +       ++   +                  L
Sbjct: 3   KVVLVDDHHIVRQGLEFLLSTVDDLEVVKGFSDGKTFLSYIEQ--------------HHL 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD ++      ++   +             +   L    +      I+      +
Sbjct: 49  PDIVLLDLVMPEMNGIEITEVLKRQ--------YPQVKVLVLTSYVDDEHVISAIDKGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   +  +    RII  +    I  ++                  +L+ 
Sbjct: 101 GYEMKDVEPQKLIETIHKVLNGERIIHPEAKSVIETVSKKPHF-----------TNKLSK 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L  + +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N ++
Sbjct: 150 REVEVLREMVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207


>gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 280

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 84/247 (34%), Gaps = 22/247 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +  S +       + +        W   +  +   +G +H+L+    +         
Sbjct: 11  ARRTAPSTVLQA---FSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLA 67

Query: 78  -VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-----------TLPENITPPAG 125
            V + +P   + C           +L+   +   P+F                      G
Sbjct: 68  GVITTFPRTWLDCYCCDGLLDIDPILKHCRQELVPMFWAQQGRRARGRTRHFWQRREEHG 127

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHW 180
           + +          R+R  L + F    +   D         + +L  Y  +         
Sbjct: 128 LCHGLSIP-LRYERLRGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTD 186

Query: 181 GK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +LT RE+ECL W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  
Sbjct: 187 NPCNDDLTPRELECLYWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGS 246

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 247 AAARGLL 253


>gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 248

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 19/227 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ----EQKLDSIVSSDWPFDLVRCMALSE 94
           +  +      + A                  Q      + DS +  ++P +         
Sbjct: 20  VAESEQLFELLSAFALNFDCPWIAYGPLAPEQRVLKPTRPDSAMMWNYPDEWQERYLKMG 79

Query: 95  KDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIR 141
             K   ++++  +   P   +                +     G+ +         A   
Sbjct: 80  YAKIDPLIKKGRKGVGPFRWSEVYTHESTTENERRVLDEAGTFGLKSGVTVPLHGPAGSF 139

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISE 199
             +         +    +  + + A                +  ++++ RE EC+ WIS+
Sbjct: 140 KLMCFAKSADCELENRAITYLQIAAVQFHLRVAKLGTQRSSEHAYKISDRERECIHWISK 199

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKTS EI  ILG S+NTV+ ++ ++MRK  T  R+   A AV   I+
Sbjct: 200 GKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVELGII 246


>gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 213

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  L      +  +                    G     ++   
Sbjct: 2   IRVCLVDDQTLVRQGIKSLLALDGSIEVVAEAGD---------------GRQAVEMIPQV 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ ++ +         Q P  +    F      +       
Sbjct: 47  APDVVLMDMRMPVMSGLEALQTLSQAG--------QLPPTIILTTFDDDQLVLAGLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +  +   G ++       +     +  N F S      +   LT
Sbjct: 99  RGYLLKDVSLEQLVGAIQTVASGGSLVQPAVTQRLLSGLEHMRNDFVSL----DRPDPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 155 DRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 10/229 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P        ++  +  V+            G +     R  +     +D  
Sbjct: 3   IRVLLVDDQPLLRTGFRLILEAEPDVTVVGEAGD-----GKAAQDQSRALMPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +              P  L    F      +       + +       
Sbjct: 58  MPGVDGIEATRRIVREAVS----GAHVPKVLVLTTFDLDEYIVEALRAGASGFLLKDVPP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++     I+       +      +            +   LT RE+E L  I
Sbjct: 114 DELVQAIRVVAAGDAIVAPSVTRRLLDRFGARLPSAHQQPTPA-RLDRLTEREMEVLRLI 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++ +++ K   + R  A+  A    ++
Sbjct: 173 ARGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETGLI 221


>gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 251

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 29/243 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-----QKLDSIVSSDWPFDL 86
           LL  +       +    +  +    G  ++ L             +   + ++  WP   
Sbjct: 9   LLVILEECSNPEAVITELEQILRGCGFEYYGLPHHLPQSPLQQNPEPWAAALAGRWPEQW 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------------TPPAGMDNRY 130
            +  A  +      +++       P                             G+++ Y
Sbjct: 69  PQIYAAKKYALIDPMVRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGY 128

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKD 183
                  + I   L L   K   +    +  +  +A               + +     D
Sbjct: 129 IFPIHGRSGILGSLSLAG-KPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPAD 187

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+
Sbjct: 188 TPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQHAVALAFRH 247

Query: 244 NIV 246
            ++
Sbjct: 248 GLI 250


>gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
 gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220]
          Length = 240

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+++    + L         +  + + + +P   V 
Sbjct: 10  RRSMLLRFQEMATAEDVYNELQQQTQHLEFDFYALCVRHPVPFTRPKTSLYTTYPKAWVA 69

Query: 89  CMALSEKDKYYNVLQR--PTELFCPVFHTLP------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+    ++   P   TL        +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFSQGHLPWSDTLFRDAQPLWDAARNHGLRKGMTQCLMLPNRA 129

Query: 141 RI--GLMLLFPKGRIILRDRLW-EIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
                +     +   +  D +   + LL     ++      D+    +   + RE E L 
Sbjct: 130 LGFLSVSRANIRNSRLANDEVELRMQLLVRESLSVLMRLEDDMVMVPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240


>gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 247

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 140 NARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 200 MGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMGMV 247


>gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68]
 gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68]
 gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF]
 gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1071]
 gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1636]
 gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1679]
 gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1162]
 gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 210

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQEDIEVIGEAEN---------------GRQGYEKAMAL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +             +   +    F    +         
Sbjct: 47  RPDVILMDLVMEEMDGIESTKAILKDW--------PKAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++         M +  D    +  ELT
Sbjct: 99  AGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKM------MEKMSRRNDPVLHE--ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ +V
Sbjct: 151 NRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 15/231 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D           V     +  + E   G      V         +D  +   
Sbjct: 1   MTTVLLVDDQPLLRTGFRLVVESEPDLEVVGEAADGRVALSQVAGLAPDVVLMDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +     D           L    F              + +   +     + 
Sbjct: 61  DGVEATRRIVAEHPD--------SRVLVLTTFDVDDLAFAALRAGASGFLLKSARPDELV 112

Query: 142 IGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDV-----HWGKDFELTGREVECLT 195
             +  +     ++    L   + L A +     +  D         +   LT RE++ L 
Sbjct: 113 DAIRTVAAGTSVVAPRVLRRMLDLFAPHLPAGAEDGDPQERTGPHPRLRGLTPRELDVLR 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+EG ++ EIA  L +S  TV  ++ ++  K   + R  A+  A    +V
Sbjct: 173 LIAEGASNAEIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYECGVV 223


>gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551]
 gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
 gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551]
 gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum
           IPO1609]
          Length = 236

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P   D        +        + ++   +G  +            K    +   +P   
Sbjct: 3   PGFQDAYHAFRTAEDERQLFREIASIARQLGFDYCCYGARMPLPVSKPAVAIFDTYPAGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           ++    +        ++        +              +    AG++      ++   
Sbjct: 63  MQHYQANGFLDIDPTVRAGASSGDMIVWPVSIRDEAARLWSDARDAGLNVGVARSSWTAH 122

Query: 139 RIRIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                L L      +   +          +  LA    + F    +    +  LT RE E
Sbjct: 123 GAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAVLTARERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 183 VLCWTGEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci]
          Length = 246

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 22/227 (9%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN-----------ITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +++       P F    E             +    + +       D + +   L L  
Sbjct: 80  PIIKHAWHSITPFFWREAECCSGRRTDDFLKRSAKYQLSSGATFTLHDASWLFAALSLCN 139

Query: 149 PKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWISE 199
            +        +R++  +I +      +                  +L+ RE   L W++ 
Sbjct: 140 ARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWVAM 199

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 200 GKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAVYKAINMGMV 246


>gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 213

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +  ++ LD  +             G      +         +D  
Sbjct: 2   IRVCLVDDQTLVRQGIRSLLALDAGIEVVAEA-----ADGRQAVEQIPQIQPDVVLMDMR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + ++ ++ +              +    F      +         Y      +
Sbjct: 57  MPVMSGLEALQMLSRNGTLP--------PTIILTTFDDDQLVLAGLKAGAKGYLLKDVSL 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  +   G ++       +     +  N F S      +   LT RE E L  +
Sbjct: 109 EQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSL----DRPDPLTDRETEILRLM 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 165 ASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 236

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 71/230 (30%), Gaps = 10/230 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +S    +  + E   G +     R        +D  +     
Sbjct: 4   RVLIVDDQAMVRAGFAALLSAQPDIEVVGEAADGRAGVAAARTARPDVVLMDVRMPELDG 63

Query: 84  FDLVRCMALSEKDKYYNV-------LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
               R +  +               +  P  L    F              + +      
Sbjct: 64  LAATREILAARPPASEPAPSSGPEGVSGPRVLMLTTFDVDDYVYEALRSGASGFLLKDAP 123

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   + ++     ++       +  +A + A           +  ELT RE E L  
Sbjct: 124 PADLIAAVRVVAAGEALLAPSVTRRL--IADFAARHPAPRKGTGHRPKELTPRETEVLEL 181

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EIA  L ++  TV  +I  I+ K   + R+ A+ +A  + +V
Sbjct: 182 IAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESGLV 231


>gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 228

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +DE     +     +   L  +   +                G +   L +  
Sbjct: 7   LRILLVEDDELFRLGLQTRLQQEQCLQVIAEAED---------------GETAVELTQEH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +      +  + +     +    VL   +    P+           A   
Sbjct: 52  LPDVVVLDIGLPGIGGIEACKQIKQHHPEI--PVLVLTSHSQKPLI------ERLIAAGV 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             YC        + + +  +        +    E   + +   N    +      +  LT
Sbjct: 104 QGYCLKGIAAETLVLAIRSVAAGASWWDKAATTE---IRSAITNNESKFVPKSELENPLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A++  +V
Sbjct: 161 KREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKGLV 219


>gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           TIE-1]
          Length = 240

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 15/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD---SIVSSDWPFDLVRCMAL 92
           +   D   +  + + A  +  G SH +            +   ++V   WP    R    
Sbjct: 16  VERADTPDAVALALLAAVQVHGFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFS 75

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPEN-----------ITPPAGMDNRYCSLTFDVARIR 141
                    ++R T    P   T   +                G+   +      +    
Sbjct: 76  KGYIFTDPAIRRVTSSMVPFSWTELWDHDSPAGHRILGEAAEFGLKEGFTVPMVTLDGHS 135

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            GL +       +       + ++A Y                 LT RE + L WI+EGK
Sbjct: 136 AGLSIAGAMTE-LPPHLRGPVQMMAIYSFARAAHLRERPPAPVTLTIREADVLHWIAEGK 194

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EIA IL +S + V+     I  K     R  A+  A+R  ++
Sbjct: 195 TDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239


>gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans]
 gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 237

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 14/231 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            DLL     ++C          +   +   +            +  +++ S++P      
Sbjct: 6   EDLLQTFQSIECERQVLAMASEMARKLEFDYCAYGLRMPLPLVRPKTVLFSNYPAVWQAR 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
               E       ++       PV  +                 G+         D   + 
Sbjct: 66  YQAQEYQAIDPTVRHAMRSPSPVVWSDDLFAPARELWEEARSFGLRAGLAHTCRDAGGMG 125

Query: 142 IGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
             L L      +   +        + L+ A   +M +        +   +L+ REVE L 
Sbjct: 126 GMLTLARAGETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLR 185

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W  EGKTS EIA IL I+  TVN +I+  M K     ++ A+  A    ++
Sbjct: 186 WTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAMLGLL 236


>gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
 gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
          Length = 210

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M      +G  +        F       ++ S++P         +        ++     
Sbjct: 1   MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60

Query: 109 FCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
             PV  + P               G+ + + S +         L L   +  I   ++  
Sbjct: 61  DRPVTWSAPANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDTAEKFR 120

Query: 161 E---IGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               +  LA         +     + D +LT RE + L W ++GKT+ EIA+IL IS +T
Sbjct: 121 NESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISEST 180

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN ++ +I+ K  +  +  A+A A    ++
Sbjct: 181 VNFHVKNIVSKLGSTNKIQAVAKAALMGML 210


>gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 273

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 32/245 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             +  + +++  + +     V  L      +                       G     
Sbjct: 57  KSMDPLTVLIVDDHQFFRDGVQALLDAQPDIECAGEATT---------------GCEAIR 101

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  + S    D  R +  +        ++         F         
Sbjct: 102 LAAERQPDVVFMDVHMPSMSGVDATRQIVSN-----SPQIRVLVVTM---FEDDHLVFAA 153

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +     I           +A    + F +       
Sbjct: 154 MRAGARGYLLKGVRHEDMVRAIRAVGSGDAIFSPA-------IATRLVSYFSALQPEHPS 206

Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               EL+ RE + L  +++G  + EIA  L +S  TV NY+++I+ K     R+ AI  A
Sbjct: 207 QIFPELSHRERDILALLAQGCKNAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAILRA 266

Query: 241 VRNNI 245
               +
Sbjct: 267 KDAGL 271


>gi|239979247|ref|ZP_04701771.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 227

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 65/229 (28%), Gaps = 11/229 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++     +             G S   + R        +D  
Sbjct: 3   IRVIIVDDQGMVRAGFAALLSAQSDIDVVGEA-----ADGRSGIEVSRKTHPDIVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +             RP  +    F              + +       
Sbjct: 58  MPEMDGLTATREL----LSPEPGTAHRPKVIMLTTFDVDDYVYEALHAGASGFLLKDSPP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++          +        +       +   LT RE E L  +
Sbjct: 114 ASLVSAVRVIHGGNALLDPAVTRR--FIEDIVRRRPRPRRDPRLQLNGLTPRETEVLELV 171

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L ++  TV  +I+ I+ K   + R+ A+  A  + +V
Sbjct: 172 ARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESGLV 220


>gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
 gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 15/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD---SIVSSDWPFDLVRCMAL 92
           +   D   +  + + A  +  G SH +            +   ++V   WP    R    
Sbjct: 16  VERADTPDAVALALLAAVQVHGFSHVIAGVIPTPGTSAKEQIANVVLHQWPDVWSRRYFS 75

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPEN-----------ITPPAGMDNRYCSLTFDVARIR 141
                    ++R T    P   T   +                G+   +      +    
Sbjct: 76  KGYIFTDPAIRRVTSSMVPFSWTELWDHDSPAGHRILGEAAEFGLKEGFTVPMVTLDGHS 135

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            GL +       +       + ++A Y                 LT RE + L WI+EGK
Sbjct: 136 AGLSIAGAITE-LPPHLRGPVQMMAIYSFARAAHLRERPPAPVTLTIREADVLHWIAEGK 194

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EIA IL +S + V+     I  K     R  A+  A+R  ++
Sbjct: 195 TDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239


>gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 242

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 80/232 (34%), Gaps = 17/232 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              D +  +     + S   +   +   +G   +++       +    +I+++ WP +  
Sbjct: 9   RALDYVDAIEASKTSASVLSQFEKMIGDLGFHAYIMAGVPAPGQSLQHTILANGWPSEWF 68

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLT 134
              A  +  +Y  + +       P                           ++  +C   
Sbjct: 69  DLYAREQFHRYDPIPRHCLSTLNPFAWSEAPYDRNDEPGAHEVMTRARDFRLNEGFCVPI 128

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVE 192
                    + L   +   +  D    + L++ +  +  ++       G+   L+  E E
Sbjct: 129 HYDDA-VGAVSLAG-ERPNLAPDARGALHLISIFTHSRLRALARATSGGQSRRLSRIEAE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+W + GKT+ E A ILG+S   V  ++    RK  TK ++  +A A+ N 
Sbjct: 187 VLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLETKNKTATVATALVNG 238


>gi|220913015|ref|YP_002488324.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859893|gb|ACL40235.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 242

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 7/234 (2%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R + V            +I     +   +      E + A     +         +
Sbjct: 10  ADRIRVALVDDQQLVRSGFGMLINSQPDLDVVVEAGNGLEALQA-----LGAVAADVVLM 64

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMDNRYCSL 133
           D  +      +  R +  S         +     +    F      +       + +   
Sbjct: 65  DVRMPGMDGIEATRRLMESALAAPAGSARAELRVVVLTTFDLDEYALAAIQAGASGFLLK 124

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 +   +  +     +I       +   +A    +       H      LT RE E
Sbjct: 125 DAPPEELLEAIRTVHRGDAVIAPSTTRRLLDHVAPLLRSQGNERPEHHAAVQRLTTRERE 184

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               I++G+++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 185 VFQLIAQGRSNPEIAAGLFVSEATVKTHVGHILAKLGARDRVQAVVIAYETGVV 238


>gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 211

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALTFVQTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILMLSS---FSEQDYVLPAIEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +            +          LT RE E L  I++G+++ 
Sbjct: 117 VAVYQGNANFHPKVTPAL-------LGRSAAKKKKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 242

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 71/252 (28%), Gaps = 36/252 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     +  +    + +  +               L               
Sbjct: 12  IKVLLADDHQLFREGLKRILNMEEDIEVVGECGDGAQVLESCLQL--------------- 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      D    +           L     +   +               
Sbjct: 57  QPEIVLMDINMPLLNGVDATAELRE--------ALPDVKVIILSIHDDESYVFETLRKGA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------------GLLAAYQANMFK 174
             Y     +   +   +  +      I      ++             G +A   A    
Sbjct: 109 TGYLLKDMEAESLINAIRTVAEGNAFIHPKVTGKLIQQLRRMEYLSETGAIAEDTAIREA 168

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G D  LT RE E L  ++EG+++  I   L IS  TV N+++SI++K     R+
Sbjct: 169 GVKFVAGDDNPLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSILQKMDVDDRT 228

Query: 235 GAIAYAVRNNIV 246
            A+  A++   V
Sbjct: 229 QAVINAIKFGWV 240


>gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 247

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        ++ K   I+ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFTTPKARKAKP--IILSNYPDSWLKSYIASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWIS 198
             K        +RD+  +I +      +                + +L+ RE + L W++
Sbjct: 140 NAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTVNCKLSSRETDILKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK   EIA I  IS  TV  +++++  K   +T   A+  A++  +V
Sbjct: 200 MGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|167755537|ref|ZP_02427664.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402]
 gi|237734285|ref|ZP_04564766.1| response regulator [Mollicutes bacterium D7]
 gi|167704476|gb|EDS19055.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402]
 gi|229382515|gb|EEO32606.1| response regulator [Coprobacillus sp. D7]
          Length = 224

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 78/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +    + L  +  ++        +                  
Sbjct: 2   IKVLIADDQELIRESLKIVLNTHEDLQVIDTVEDGFGVLDSLKR---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +          + Y  ++    +    F       +      
Sbjct: 46  ----NIPDVILMDIRMPRMDGVYCTKMVKEAYPDVKI---IILTTFDDDDFVFSALKFGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   ++ +   G +I  D   ++  L +  AN   + +V+     EL 
Sbjct: 99  SGYLLKGVSMDGLYQAILTVVSGGAMINPDIATKVFRLFSKMANTNYAINVNDDNVRELN 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  +  G ++ EIA  L +S  TV NY++SI+ K   + R+    +AV+  
Sbjct: 159 KPEWKVIQQVGFGLSNKEIAQKLFLSEGTVRNYLSSILSKLELRDRTQLAIWAVQTG 215


>gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 211

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTKEEFEIIGEAENGEEALAFVQKERPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +    ++         F      +       + Y        ++   +
Sbjct: 65  EATKR-----LKQQDATIKILMLSS---FSEQDYVLPALEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +  +           +        LT RE E L  I++G+++ 
Sbjct: 117 IAVYQGNANFHPKVTPALLGI-------LSVKEEKQDSFSMLTKREKEVLREITKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TV  ++++++ K     R+ A  YAV+N +V
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGVV 211


>gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 82/249 (32%), Gaps = 27/249 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V+HL      LA            + +  L E+    ++ LVR     +  +  +++ 
Sbjct: 1   MSVNHLIQ---FLAVSQGCRSREELILELEKLLEFYKFDYYGLVRSPKPDQNPMSLVLAG 57

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT----------------LPENITPPA 124
            WP    +     +       ++   +   P   +                         
Sbjct: 58  RWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMMMDAQRF 117

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-------D 177
           G++  Y         + +  M +  +   +    +     +A                  
Sbjct: 118 GLEEGYIFPIHGRGGL-LANMTIGGRPVELTPIEIMLFDTVAKCAFWRLAEINGEDELLS 176

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +    D  LT RE+E L ++ EG TS+E++ +L IS +TV+ Y+  +  K   K R   +
Sbjct: 177 MVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMV 236

Query: 238 AYAVRNNIV 246
           A A R  ++
Sbjct: 237 AIAYRLGLI 245


>gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 210

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRLGVSAYLSAQPDMEVIGEAED---------------GKKGVELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         R +  +              +    F              
Sbjct: 47  RPDVILMDLVMEPMDGIAATREIIGAW--------PEAKIIVVTSFLDDENVFAALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   F    +   +   ++      Q               +LT
Sbjct: 99  TSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERL--------PHEQLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ +V
Sbjct: 151 SREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42]
 gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 16/217 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    +    +  + E   GA               +D  +      +  
Sbjct: 6   ADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDIILMDLSMPDMDGIEAA 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +A         V+          +      I         Y         +   L  +
Sbjct: 66  K-IAAERFPDISIVV-------LTSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +  D       +  +        D    K  +LT RE + L  I++GK++ EIA
Sbjct: 118 YSGRYRLSAD-------IVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEIAKGKSNKEIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L IS  TV  ++++++ K     R+ A  YAV+ N
Sbjct: 171 AALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYN 207


>gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 254

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +R++  R   V         L  ++  +  +          E V  +  LL         
Sbjct: 33  SRKEPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGDGAEAVDKAADLL-----PDIV 87

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +    +          V      +   +     +           Y  
Sbjct: 88  LMDVRMPRRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYEAIKAGATGYLL 139

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +      I      ++  L  +++ + ++ +        LT RE+E
Sbjct: 140 KEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPRLTDRELE 197

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I+
Sbjct: 198 VLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 251


>gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 14/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
             D  R   V         L   +  +  +             G     L          
Sbjct: 13  SGDPIRVLIVDDHALIRRSLEMALSAETDIEVVGEA-----SDGQEAVELADRLTPDVML 67

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +  S        +     +   V     +           Y   
Sbjct: 68  MDVRMPRRSGIEAARAIKAS--------VPSTRIIMLTVSDEEEDLFEAIKAGATGYLLK 119

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              +  +   +  +     +I      ++    A   +  ++          LT RE+E 
Sbjct: 120 NVQLDEVPEAVRGVHEGQSLINPAMAAKLITEFAN-MSRKEAERPPQLPVPRLTDREMEV 178

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  ++
Sbjct: 179 LRLVAKGMNNREIAKQLFISENTVKNHVRNILDKLQLHSRMEAVVYAVRERML 231


>gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
 gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL
           15998]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 14/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R                ++  +  +    +        G      V         +D 
Sbjct: 4   PIRAVIADDQMMVRQGFTVLLNAEPDIEVVGQA-----VNGLDAIDKVAGLAPDVVLMDI 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +                 L    F              + +      
Sbjct: 59  RMPELGGIEATRRIT-------SPEGSTVKVLVLTTFDLDEYVYEALRAGASGFLLKDAS 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++  +    + +  +  A   +       +  +LT RE E LT 
Sbjct: 112 ADELAHAVRVVASGDALLSPNITKRLIVEFSRTAGAPR--APLKERVGDLTERETEVLTL 169

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 170 IASGLSNAEIARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219


>gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 230

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 64/234 (27%), Gaps = 16/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
                 R           + +  ++ L   V             G     LV        
Sbjct: 5   AETKPARVVVADDQTVVREGIVMLLGLLPGVEVVGAAGD-----GEEAVELVAELAPDVV 59

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +  R +        Y   Q         F                Y +
Sbjct: 60  LMDLRMPRCDGVEATRRIRAE-----YPATQVV---VLTTFADDESLFPALKAGARGYLT 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  I   +  +      +       +       ++              LT REVE
Sbjct: 112 KDAGGDEIVRAVQSVLSGDAGLSPSIQRRL---LERLSDPEPPQPAPAEAPDGLTAREVE 168

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+EG T+ EIA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 169 VLALIAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKDRAQAVRYAYAKGLV 222


>gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 234

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +  ++     +  + E   A                LD  +     
Sbjct: 5   EVLIVDDHPLFRRGIRWSLEEERDIRVVGEASDAQEAMRAADMLSPNVVLLDLNLPGMSG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L R +             +   +   +     +  +      + YC+   D A +   
Sbjct: 65  LELCRVLKRRH--------PQAAIVVLTMHEDDEQLFSSIRVGASAYCTKDIDPAELVTV 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISE 199
           +  +     +I  + L     +A+   + F+               LT REVE L  ++ 
Sbjct: 117 IRRVARGEYLINENVLSR-PFVASRVLDQFRELAQIDEVSSGVFSPLTPREVEILDCVAR 175

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA +L IS  TV N+I SI+RK A   R+ A+ YA+R+  +
Sbjct: 176 GNSNKEIARLLNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGWI 222


>gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 19/236 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV----RWDLFQEQKLDS-IVSSDWPF 84
            D + R                    +G  HF L     R D     +    ++S ++P 
Sbjct: 4   RDFIQRANQALTQTELLACFEQAVLLLGYQHFSLCYVQLRQDGSGTSQPPIGVLSHNYPS 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLT 134
             V             V +   +   P                 +    AG+ +      
Sbjct: 64  RWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAHIMDEATDAGLADGLGLPI 123

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN----MFKSYDVHWGKDFELTGRE 190
            +         +   +   +  D       L           F +         +LT RE
Sbjct: 124 HEPGGRIFLATVASHQQLTLGNDACVRAYALVTAFHALYTMRFATEQTQIPTAVKLTSRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECLTW++ GK+S EI  I+ IS +TVN ++ + M K  T +R  A   A    ++
Sbjct: 184 AECLTWVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVTAAVRAANLGLI 239


>gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 262

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 19/232 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMA 91
            + +        W   +  +   +G +H+L+    +          V + +P   + C  
Sbjct: 5   FSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYC 64

Query: 92  LSEKDKYYNVLQRPTELFCPVFH-----------TLPENITPPAGMDNRYCSLTFDVARI 140
                    +L+   +   P+F                      G+ +          R+
Sbjct: 65  CDGLLDIDPILKHCRQELVPMFWAQQGRRARGRTRHFWQRREEHGLCHGLSIP-LRYERL 123

Query: 141 RIGLMLLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
           R  L + F    +   D         + +L  Y  +            + +LT RE+ECL
Sbjct: 124 RGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    ++
Sbjct: 184 YWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235


>gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 75/231 (32%), Gaps = 15/231 (6%)

Query: 29  RSDLLARMIP-LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           + DL+  +             +   +  +G  H            +      +D+P D  
Sbjct: 5   QDDLIGAVSGDSASEREVFECIQRASRALGFQHVSYGFQAPLPLSRPKFTWLNDYPGDWQ 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVAR 139
                +        + R  +   P                     G+ + +   T     
Sbjct: 65  THYMDAGYPAVDPRIIRARQSSEPFIWNETLFSEVPELWADLQARGIQHGWSQSTLHEPG 124

Query: 140 IRIGLMLLFPK---GRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               L L        + +      +  + LLA    +      +       LT RE+E L
Sbjct: 125 GIGMLSLCRSTPITEQDLQTRLQHMQWLALLAHKAFSKLIRARIASNAPS-LTERELEVL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            W ++GK++ +IA IL +S+NTV+ +I + + K     ++ A+  AV   +
Sbjct: 184 RWTADGKSAQDIAEILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAVLLGL 234


>gi|111017172|ref|YP_700144.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816702|gb|ABG91986.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 219

 Score =  132 bits (332), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E     ++ +    D +  +                    GA+    VR 
Sbjct: 2   PITVLLVDDQELMRMGLNMVLDAQDDITVVGEASD---------------GAAAVAAVRT 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  S              L    F      +      
Sbjct: 47  LEPDVVLMDVRMPVVDGVSATAQILESGV--------ASRVLVMTTFDLDEHAMGALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +  +     ++       +  LA +  +           D  L
Sbjct: 99  ASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRRL--LAKFLDDGPGPLRDPEVLDV-L 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +S +T+ +++  I+ K   + R  A+  A    +V
Sbjct: 156 TEREREVLQLVATGLSNTEIAGQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGLV 215


>gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 209

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                GA         
Sbjct: 2   IRVLLVDDHEMVRIGVSAYLSIQDDIDVIAQAEN---------------GAIGVEKALDL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +              +    F    +         
Sbjct: 47  RPDVILMDLVMDVMDGIEATKEILHAW--------PEAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     I   +  ++  GR++      ++           ++ + ++    ELT
Sbjct: 99  SGYLLKTSAAHDIAQAIRTIYQGGRVVEPQVSNKL---------RNETSNRNFHLHDELT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  IS GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++  +
Sbjct: 150 NREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFKHGYI 208


>gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
 gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH
 gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii
           NGR234]
          Length = 326

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 75/247 (30%), Gaps = 22/247 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R  +V  L    DL   +            + A     G             +       
Sbjct: 81  RDEYVVELGRLLDLTDGVAQPKKLFDL---LSAFAFKFGCKWLAYGPLTSDHKALNRVKC 137

Query: 79  SS----DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NIT 121
            S    ++P            +    V++       P+  +                +  
Sbjct: 138 DSEEILNYPDGWRERCLEMGYETIAPVIKESRMGAGPIRWSDMYSDASTTEYERRMFDEA 197

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--H 179
              G+ +               +       R      +  + L A +             
Sbjct: 198 AMFGLRSGITVPLRGPRGSCAIMSFARHCEREFHDRTIAYLQLAATHFHLRVAKIANLNA 257

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   L+ RE EC+ W++ GK+S +I VI+ IS NTVN +I ++MRK  T +R+ A   
Sbjct: 258 VQKIPALSLREKECVLWVARGKSSWDIGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIK 317

Query: 240 AVRNNIV 246
           A+   I+
Sbjct: 318 AISLGII 324


>gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 209

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 14/178 (7%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            Q+   D ++      ++       +  K +  ++         +      I+      +
Sbjct: 46  AQKILPDIVLLDLVMPEMNGIEVTEKLKKEFPSIKIL---VLTSYADDEHVISAINKGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +  +    +II  +    I  +A    +             +L+ 
Sbjct: 103 GYEMKDVEPDELIQSIHKVLEGNKIIHPEVQKVIEDVAKKPHH-----------INKLSN 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  +++GKT+ EIA  L +S  TV  +++ I  K     R+ A  YA+ N ++
Sbjct: 152 RETEVLKEMAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENKLI 209


>gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 246

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 74/230 (32%), Gaps = 15/230 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+A +I          RM A     G  H L               ++S +P        
Sbjct: 16  LIASVIEATDEADLLKRMQAAAVASGFEHVLFGIELRRPFLDPIQHITSGYPDSYQEIYR 75

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE---------NITPPAGMDNRYCSLTFDVARIRI 142
                     +        P+                 +   G+ + +     D   +  
Sbjct: 76  TKGFISRDPSVAYCQTHTKPLIWGEDMYLADSYEIMEESTKYGLSHGFSVPVRDGPHVVS 135

Query: 143 GLMLLFPKGRIILRD--RLWEIGLLAAYQANMFKSYDVHWGKDFEL----TGREVECLTW 196
            L L   K      +   + + G++ A   ++     +    +  L    + RE ECL W
Sbjct: 136 MLSLARDKPFESAAEKKLVVDAGMVLANCVHVASKNIIVPDVETTLRPKLSRREHECLKW 195

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+EGK++  I+ +L IS  TV  +I ++  K    TR  A    V   ++
Sbjct: 196 IAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQAAVVGVLMGLI 245


>gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 211

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILMLSS---FSEQDYVLPALEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVYQGNANFHPKVTPAL-------LGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
 gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis
           5-1]
          Length = 257

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 75/254 (29%), Gaps = 35/254 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V  +    D           ++    M+ + +   G+    L +        +D  +  
Sbjct: 8   GVIRVAIADDQELVRAGFAMVINSQQDMHVVYQASNGSQIVELSKSQNPDIILMDVRMPV 67

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +   + ++          +    F      +       + +     +   +
Sbjct: 68  MDGLEATRKILQQKTNEN------TKIIILTTFDLDEYVMAAIHAGASGFLLKDTEPETL 121

Query: 141 RIGLMLLFPKGRIILRDRLWEIG----------------------------LLAAYQANM 172
              +  ++    II       +                             + A   A  
Sbjct: 122 LNSIRTVYQGNAIIAPTATKRLIENMIQQGKVATNTTENSAANYTAQVSYDVQANPAAQE 181

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +S         ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + 
Sbjct: 182 TQSCAYTNSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARD 241

Query: 233 RSGAIAYAVRNNIV 246
           R  A+ +A  N +V
Sbjct: 242 RVQAVVFAYENGLV 255


>gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 213

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 27/237 (11%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  + E     ++ L      +  +                    G     L      
Sbjct: 1   MLVVDDQELFRRGLTMLLGTEAGIEVVGEAGD---------------GVEGTNLAATAAP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +    +           +     +   V     +         + 
Sbjct: 46  DVVLLDIRMPKRSGIEACLAIKE--------AVPSAKIIMLTVSDEEADLYEAVKSGASG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      +  +   + ++     +I      ++      +       +        LT R
Sbjct: 98  YLLKDSSIEEVAQAVRVVADGQSLISPSMAVKL----IDEFKQMSRPERDHVPGLRLTER 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAV+  ++
Sbjct: 154 ELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMYAVKEKLL 210


>gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 25/237 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    + L R+I ++  +             G     L          +D  +  +
Sbjct: 5   LADDHQLFREGLKRIINMEDDMEVVGECG-----DGIQVIELCNEIQPDVVLMDINMPLE 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   + L        +      +   +               + Y     +   + 
Sbjct: 60  NGVVATERLKL--------IFPDIKIIILSIHDDESYVFETLRKGASGYLLKDMEAESLI 111

Query: 142 IGLMLLFPKGRIILRDRLWEI------------GLLAAYQANMFKSYDVHWGKDFELTGR 189
             +  +      I      ++              +A        +          LT R
Sbjct: 112 NAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVAGGNPAHDSALRYIDSPSSPLTKR 171

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++EG+++  I   L IS  TV N+++SI++K     R+ A+  A++N  V
Sbjct: 172 EAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRTQAVIIAIKNGWV 228


>gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22]
 gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22]
          Length = 240

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVCESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 227

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 11/229 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++  +  +             G     LV         +D  
Sbjct: 5   LRVVLVDDQALVRAGFRVILGAEPDIEVVGEAGD-----GERAVELVAELAPDVVLMDVQ 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 +    F              + +       
Sbjct: 60  MPVLDGIEATRRILGP-----APAEHPVRVVVLTTFDREDYLFEALRAGASGFLLKNASP 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++     ++  +    + L          +      +  +LT RE E L  +
Sbjct: 115 EDLVEAIRVVARGDALLSPEVTRRV-LARFAGPAPRAAPATAPNRPADLTDREYEVLVHL 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +   TV  +++ ++ K   + R+ A+ YA  + +V
Sbjct: 174 ARGSSNAEIAARLHLGETTVKTHVSRVLAKLGLRDRTHAVVYAYEHGVV 222


>gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata]
          Length = 242

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 13/219 (5%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
               +T  +  +   +G   F  V  +          + S++P + V     +   K   
Sbjct: 24  SEEEYTEILGWIFSRLGIEKFAYVHLEPTPFNNSKISIYSNYPSEWVDTYRKNSLYKSDP 83

Query: 101 VLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           V+        P F               + +   G+   Y     +  R    L L   +
Sbjct: 84  VMANTAITATPFFWNEIPAEIDNNPEIFDQSASYGIKQGYTVPIHEPGRAFGSLHLSSEE 143

Query: 151 GRIILRDRLWEIGLL---AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                   +     +    +  AN ++  +     + +L+ RE+E L W++ GK   EI 
Sbjct: 144 NDPDFPIIVRSNLFIIKTLSVIANQYRPMETTIESNLKLSPREIEFLRWLALGKNYKEIG 203

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+ I+  TV  +   +  K        A+  AV+ N V
Sbjct: 204 LIMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNFV 242


>gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 69/244 (28%), Gaps = 27/244 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +     + +  +    D +  +                    G     L    
Sbjct: 19  VRVLLVDDQALVRAGIRVILESEDGIEVVGEAAD---------------GEEGVRLAAAL 63

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           +     L    F       T      
Sbjct: 64  APDVICMDVQMPRVDGLEATRRIVA------DPTI-GAAVLMLTTFDREDYLFTALDAGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-----GK 182
           + +   +     +   + ++     ++  D    +            S           +
Sbjct: 117 SGFVLKSASPESLVEAVHVIARGDALLSPDVTRRVIERFGRGPADAASTAPIPTIPTDPR 176

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  ++EG  + EIA  L +   TV  +++ ++ K   + R  A+ +A  
Sbjct: 177 VATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYE 236

Query: 243 NNIV 246
             IV
Sbjct: 237 RGIV 240


>gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 251

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 29/243 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW----DLFQEQKLDSI-VSSDWPFDL 86
           LL  +       +    +  +    G  ++ L+R        Q  +L +  ++  WP   
Sbjct: 9   LLVILEECPNPDAVVAELEQVLHGSGFEYYGLLRHLQQNPAQQNIELRAAPLAGRWPEQW 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------------TPPAGMDNRY 130
           ++  A  +  +   +++       P                             G+++ Y
Sbjct: 69  LQIYAAKKYVRIDPMVRYLAHAQRPFRWRESMAAFDGDAHQRRMEQMMVDAFGHGLEDGY 128

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKD 183
                    I   L  L  K   +    +  +  +A               + +     +
Sbjct: 129 LFPIHGRNGILGSL-TLGGKPIDLSPVEIALLEAVARKSFWRLLDLTGEAEALETVLPTE 187

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+
Sbjct: 188 TPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRH 247

Query: 244 NIV 246
            ++
Sbjct: 248 GLI 250


>gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 214

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA    L          +D  +     
Sbjct: 7   RVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAGDGAEGVALTEELKPDVVLMDVKMPGMDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +R +                 L    F      +       + Y     D   +   
Sbjct: 67  IDALRKLRELANP--------AKVLVVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++ ++    +                  G+   LT RE E L  I++G+++
Sbjct: 119 IRSVHAGHVLLQQEIAGALL--------SDGDPGNGTGRGNSLTEREREVLGLIADGRSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 171 REIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGM 212


>gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 230

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +          +    + +  +      +    ++ AL               
Sbjct: 6   IKVLLVDDQPLLRMGFRLILEGEEDVHVVGEASDGIEAVRQVEAL--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  S  D           +    F       +      
Sbjct: 51  QPDVVLMDVRMPGMDGIEATKQITDSGSD--------ARVIILTTFDLDEYAFSGLQAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
           + +       + +   + L+     ++       +    +                   E
Sbjct: 103 SAFLLKDVAPSELVHAVRLVASGDAVVAPRVTQRLLETYVRGGVVPGHSPTSHRDPLLDE 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT I+EG ++ EIA    +S  TV  ++  I+ K   + R   + YA    +
Sbjct: 163 LTPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYAYETGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 210

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IRVLLVDDHEMVRLGVSAYLSAQPDMEVIGEAED---------------GKKGVELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         R +  +              +    F              
Sbjct: 47  RPDVILMDLVMEPMDGIAATREIIGAW--------PEAKIIVVTSFLDDENVFAALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   F    +   +   ++      Q               +LT
Sbjct: 99  TSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERL--------PHEQLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ +V
Sbjct: 151 SREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85']
          Length = 260

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 78/236 (33%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L     +         +   T  +G  ++      L   Q+   ++ +  P   V+  
Sbjct: 8   EYLEHFTSVTDGDRLAELISRFTLGMGYDYYRFAVIILMSMQRRKVVLFNQCPDSWVQAY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENI--------------TPPAGMDNRYCSLTFD 136
             +       ++Q   +   P++    E                    G+ N        
Sbjct: 68  TANHMLACDPIIQLARKQTLPLYWNRREERGRFLQEGSRDVMGLAAEFGLRNGISFPLHR 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE----LTGRE 190
            A  +  +  +  +                ++ Y             ++ +    LT RE
Sbjct: 128 AAGGKGIMSFIISERASRDLLLESSPLLSWMSNYIFEAAIRIVRVSLREDDPQEALTARE 187

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL   +EGKTS EIA ILGI+   VN ++  + RKT +  R  AI   V + I+
Sbjct: 188 TECLFLATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGIL 243


>gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
 gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3]
          Length = 237

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 68/228 (29%), Gaps = 14/228 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L               + A +  +G  H        F       ++ SD+P         
Sbjct: 9   LDLFATAKSGHDVFRELSAASRELGFEHCSFGMRVPFPISNPRYVLQSDYPEAWKERYIR 68

Query: 93  SEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                    +Q       P+          T         G+   +C            +
Sbjct: 69  HNYFAVDPTVQHGLTQSLPLTWQADGQTESTEFWEEAAHHGLRYGWCMPACCQNGTIGLV 128

Query: 145 MLLFPKGRIILRDRLW---EIGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWIS 198
            +      I  R+ L     +  LA+   +   +          + ELT RE E L W +
Sbjct: 129 TMARSDEPIEERELLCKEYRMLWLASAVNSAMNAHLLAQSAPEYEVELTCREREALKWSA 188

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EI +I+ +   TV  ++ + MRK     ++ A   A    ++
Sbjct: 189 AGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAAMLGLL 236


>gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response
           regulator) [Eubacterium rectale ATCC 33656]
 gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale DSM 17629]
 gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 214

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 81/239 (33%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       + +L      +  +   +       ++                  
Sbjct: 3   INIMITDDHSMIREGLKNLLELDGDIKVIAEAENGEDCLDKLKTF--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++++ +   +         +   L   V +     +       
Sbjct: 48  RPDVLLLDINMPKMNGLEVLKALKDRKS--------KVKVLVLTVHNETEYLMKAVDIGI 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y     + A ++  +  +      I    +  +        +     +    K   LT
Sbjct: 100 NGYVLKDSESAELKKAIFTIADGETYIQPSLIPAL-------NSKMIQKNEDELKIDALT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ GK + +IA  + IS  TV N+I+SI +K     R+ A  +A+RNNI+
Sbjct: 153 KREMEVLKEMAVGKFNRDIAKEMKISERTVKNHISSIFKKLEVTDRTQAAVFAIRNNII 211


>gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 262

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 19/232 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMA 91
            + +        W   +  +   +G +H+L+    +          V + +P   + C  
Sbjct: 5   FSELAREHNPCDWERHLRKVMRQLGFAHYLISLSPMRPWTGNPLAGVITTFPRTWLDCYC 64

Query: 92  LSEKDKYYNVLQRPTELFCPVFH-----------TLPENITPPAGMDNRYCSLTFDVARI 140
                    +L+   +   P+F                      G+ +          R+
Sbjct: 65  CDGLLDIDPILKHCRQELVPMFWAQQGRRARGRTRHFWQRREEHGLCHGLSIP-LRYERL 123

Query: 141 RIGLMLLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECL 194
           R  L + F    +   D         + +L  Y  +            + +LT RE+ECL
Sbjct: 124 RGTLSVAFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W S GKTS EI+ IL  S  TV+ ++ +  RK  + +R  A+  A    ++
Sbjct: 184 YWASAGKTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLL 235


>gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
 gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium
           E1039]
          Length = 210

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQEDIEVIGEAEN---------------GRQGYEKAMAL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +             +   +    F    +         
Sbjct: 47  RPDVILMDLVMEEMDGIESTKAILKDW--------PKAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++         M +  D    +  ELT
Sbjct: 99  AGYLLKTSTAHEIADAIRATQCGERVLEPEVTTKM------MEKMSRRNDPVLHE--ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ +V
Sbjct: 151 NRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
 gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11]
          Length = 252

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 17/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+   
Sbjct: 198 EGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTG 243


>gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR
 gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri]
 gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri]
 gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt]
 gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105]
 gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106]
          Length = 250

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 17/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 16  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 75

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 76  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 135

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 136 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 195

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EGK+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+   
Sbjct: 196 EGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTG 241


>gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 272

 Score =  131 bits (331), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 71/242 (29%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + +++  +       +  L      +A +                    G     L 
Sbjct: 50  QRPIRVLVCDDHAILRDGIRTLLEAHPDIAVVGEAAD---------------GREAVELA 94

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +      +  R +                 L   +            
Sbjct: 95  RRLQPDVVLLDIGMPGMNGIEATRAILKQR--------PETRVLILSMHDNEEYIFPILE 146

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   L  +     I+  D   ++   AA +     + +    +  
Sbjct: 147 AGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGEGAGEGAPRRVD 206

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E LT I++G T+ EIA  L IS  TV  + ++IM K           YA+R+ 
Sbjct: 207 GLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHG 266

Query: 245 IV 246
           ++
Sbjct: 267 LI 268


>gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 251

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 21  RRAMLLRFQEMATAEGVYTELQYQTQRLEFDYYSLCVRHPVPFTRPKISLRTTYPQAWVT 80

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 81  HYQAENYIAIDPVLKPENFREGHLHWDNVLFHEAQAMWDAAQRFGLRRGVTQSVMLPNRA 140

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
              L +             +    + LLA    +       D+    +   + RE E L 
Sbjct: 141 VGFLSVSRGSLGCSSFTYDEVELRLQLLARESLSALTRLEDDIVMVPEMRFSKREKEILK 200

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 201 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 251


>gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 233

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 8   APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 65

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 66  PIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 125

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 126 NARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWVA 185

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 186 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINIGMV 233


>gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 214

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 17/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
               +  +    D       L   +     +  + E   G                +D  
Sbjct: 1   MADKIIKVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGDQGVTEAESLRPDVVLMDIK 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +   +             L    F      +         Y     D 
Sbjct: 61  MPGTDGIEALRRLRELDNP--------AKVLIVTSFTEQRTVVPALRAGACGYVYKDVDP 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++  +    +           +      G+   LT RE E L  I
Sbjct: 113 DALAGAIRSVHAGHVLLQPEVAGALL--------AQEDAGGGTGRGSTLTEREREVLGLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 165 ADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211


>gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C]
 gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C]
          Length = 223

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 64/230 (27%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R                ++  +  +    +        GA         +     +D 
Sbjct: 4   PIRVMIADDQMMVRQGFTVLLNAEPDIEVVGQA-----IDGADAVAKAGELVPDVVLMDI 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +  +              L    F              + +      
Sbjct: 59  RMPGMGGIEATSVITGTPGS-------AVKVLVLTTFDLDEYVYEALRAGASGFLLKDAS 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   + ++     ++  +    +    +                 ELT RE E L+ 
Sbjct: 112 ADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIE---ELTERETEVLSL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A    +V
Sbjct: 169 IAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLV 218


>gi|119491420|ref|ZP_01623439.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119453415|gb|EAW34578.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 209

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 74/239 (30%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ +  R   +  +   +                G     L    
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPEMQVIAQAEN---------------GEQAIALFGEH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +          +++    +    + +  +         
Sbjct: 52  QPDVTLMDLRMPEVEGVAAIGAI--------CALVKSARIIVLTTYDSDEDIYRGLQAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +  +    + I  D   ++    +               + EL+
Sbjct: 104 KGYLLKDTEPDELLNAIRTVHRGQKYIPPDVGAKLVQRLS---------------NPELS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++G ++ +IA  L I   TV +++  I+ K     R+ A+  AV+  IV
Sbjct: 149 ERELEVLRSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGIV 207


>gi|294499258|ref|YP_003562958.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349195|gb|ADE69524.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 212

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 69/221 (31%), Gaps = 15/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     L          +D  +      
Sbjct: 5   ILIADDHHVVRKGLVFFLQTQPDLEIVGEASNGEEALKLATSLEPHIVLMDLSMPVLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +     A  E  K    +Q         F      I       + Y     D   +   +
Sbjct: 65  E-----ATKELKKQAPHIQVM---ILTSFSDQDHVIPALEAGASGYQLKESDPDELVAAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L      +       +           KS +        LT RE + L  I++GK++ 
Sbjct: 117 RKLMNGENQLHPKVTTHLLTRLT------KSSEKKVNFIDHLTKREKDVLKEIAKGKSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI V L I+  TV  ++++I+ K   + R+ A  YAV++ I
Sbjct: 171 EIGVALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211


>gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 13/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P        ++  +  ++            G      VR        +D 
Sbjct: 2   AIRVLLVDDQPLLRTGFRMILEAEGDIAVVGEAG-----DGLQAIDQVRALQPDVVLMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +    +D           L    F      +       + +      
Sbjct: 57  RMPRMDGVEATRQITGPGRDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++       +  L  Y  ++    +        LT REVE L  
Sbjct: 111 AVELVQAIRVVAAGEAMLAPSITRRL--LDKYADHLPSGEEPVPDALHTLTEREVEVLKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EIA  L +S  TV  ++  ++ K + + R  A  YA  + +V
Sbjct: 169 VARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESGLV 218


>gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi
           pv. savastanoi]
          Length = 247

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++SS++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VISSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 140 NARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWMA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 200 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 215

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEALTFVRTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y + ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDDTIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHEGNTNFHPKVTPAL-------LGRSAIKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12]
 gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium
           DO]
 gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330]
 gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733]
 gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410]
 gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12]
 gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium
           U0317]
 gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980]
 gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 210

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQEDIEVIGEAEN---------------GRQGYEKAMTL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDVILMDLVMEEMDGIESTKAILKDW--------PEAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++    + +               ELT
Sbjct: 99  AGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHE--------ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ +V
Sbjct: 151 NRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|261407019|ref|YP_003243260.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283482|gb|ACX65453.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 601

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 19/240 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRW 66
             T  +       D + R++ +D        +  L E             G     L R 
Sbjct: 369 LVTCTLPRQTELKDEVIRLLVVDDHPVIRESLRTLLEEQQDFQVVGTAEDGEQAIELCRQ 428

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              Q   +D  + +       R +  S     +  ++         F    + +      
Sbjct: 429 VRPQLVLMDVEMPNLDGISASRTIKES-----WPHIRIL---ILTTFEDTKQALEAMRSG 480

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +   +  +   G +I +    ++        +      +     ++L
Sbjct: 481 VDGYLLKSMQPLELAETIRTVHRGGTLIDQGMSHKLFAQLEADNSRDDPSSIKASSAYDL 540

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L ++SEG     IA  L +S  TV NY +S+  K   + R  A+  A    ++
Sbjct: 541 TPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKAREAGLL 600


>gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 247

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAQYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 140 NARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 200 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 228

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 13/228 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L +   +         +   TE +   ++ L         +      S +P   +    
Sbjct: 1   MLHQFQSMATGEEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQ 60

Query: 92  LSEKDKYYNVLQR--PTELFCPVFHTLPENI------TPPAGMDNRYCSLTFDVARIRIG 143
                    VL+         P   +L  +           G+              +  
Sbjct: 61  AENYFAIDPVLRPENFMRGHLPWNDSLFRDAPALWDGARDHGLQKGVTQCLTLPNHAQGF 120

Query: 144 LMLLF-----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L +               +         +    +    ++    + + + RE+E L W +
Sbjct: 121 LSVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILKWTA 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGKTS E+A+IL IS NTVN +  ++ RK     ++    YAV   ++
Sbjct: 181 EGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 228


>gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 242

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 16/223 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVRCMALSE 94
           +       +         E  G  +FL+    +         I++  W  +         
Sbjct: 16  IDTARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILADGWSPEWHHRYVTEA 75

Query: 95  KDKYYNVLQRPTELFCPVFHTLP------------ENITPPAGMDNRYCSLTFDVARIRI 142
              +   + +      P                   +     GM    C           
Sbjct: 76  YFLHDPCVAQCRHSPEPFRWGELPVARLVPRAKLVMDEAAEFGMKEGICIPIHVPLAGPG 135

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEG 200
            + +   +  +     +  I  L  +      +        +   LT RE E L W ++G
Sbjct: 136 VVTMASDRMEVP-PSAMPLIETLCVHTFRSLSALGTPGDGNEPTPLTARERELLEWSAQG 194

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           K++D+IA ILG++RNTV ++  +I  K      + AI  A+R 
Sbjct: 195 KSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRR 237


>gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 220

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         +     +  + E   G     L    +     +D  +     
Sbjct: 3   RVLLADDQVLMRGGFRALLDAEDDISVVAEAANGEEAVSLAAEHVPDVALIDIQMPGTGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +              + +     + A +   
Sbjct: 63  IEAARRIAAR------PELASVRVVMLTNYGFDEYVYNALRAGASGFLVKDIEPAELLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +  D    +      +    +    +   D  LT RE E +   ++G  +
Sbjct: 117 VRQAARGDAPLSPDVARRL-----MRDFASRPLSPNPVDDERLTNREREVVVLAAQGLNN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L IS  T   +I+  M K A + R+  + YA  + ++
Sbjct: 172 EEIAERLVISPTTAKTHISRAMIKLACRDRTQLVVYAYESGLI 214


>gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 229

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 62/230 (26%), Gaps = 8/230 (3%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V            ++     +             G     ++R        +D 
Sbjct: 2   PIRVMLVDDQELLRTGFRMVLQSQGDIEIAAEAG-----DGQQAVEVLRTAEVDVILMDV 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R + L E      V   P  L    F              + +      
Sbjct: 57  RMPRLDGVQATRRICLDEHGN--PVENAPRVLILTTFDLDEYAFAALKAGASGFLLKDVP 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +     ++       +    A       S          LT RE E    
Sbjct: 115 PTELVAAIRSVHGGDAVVAPTTTRRMIDRFAEVLPTPAS-TPGSTVLGPLTDREREVFLL 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S+G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A  N +V
Sbjct: 174 VSQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYENGLV 223


>gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 237

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             +LL+ +         ++ +     ++G           +   +    + S++P    +
Sbjct: 5   AGELLSGLEGASSEREISILIEGAANHLGYEFCGYGLRIPWPVSRPKIYLLSNYPEAWKQ 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
               +        ++       PV  T                 G+ + +   TFD   +
Sbjct: 65  RYMEAGYIDIDPTMKHMRRFQTPVVWTDAFFSRTPELWRDAQAHGLRHGWSQSTFDSCGV 124

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L    G +   +      R+  +               +    +  LT REVE L
Sbjct: 125 SGMLTLARSTGPVTPAELERNEFRMRWLVSTTHLAMTRVLMPKLMPDTERGLTDREVEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 185 KWAADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAAMLGLL 236


>gi|291444348|ref|ZP_06583738.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347295|gb|EFE74199.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 225

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 69/221 (31%), Gaps = 5/221 (2%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           ++    +  + E   G     + R        +D  +       
Sbjct: 2   IIVDDQAMVRAGFAALLAAQSDIDVVGEAADGRQGVDVSRNHHPDVVLMDVRMPEMDGLA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +     +    V+ RP  L    F              + +       A +   + 
Sbjct: 62  AAREL----LNPPVGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++     ++       +    A Q     +      +   LT RE E L  I+ G ++ E
Sbjct: 118 VVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALRLNGLTPRESEVLELIARGLSNQE 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 178 IAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 218


>gi|318061908|ref|ZP_07980629.1| two component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078461|ref|ZP_07985793.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 224

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 8/224 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           ++    +  + E   GA    L R        +D  +    
Sbjct: 3   TRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +          V  RP  L    F              + +       A +  
Sbjct: 63  GLEAARRLLAPPPG----VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++     ++       +  +A +             +   LT RE E LT ++ G++
Sbjct: 119 AVRVVAAGDALLAPSVTRRL--IADFARQRPAPGKPAL-RLKALTERETEVLTLVARGRS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 176 NAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 219


>gi|239926785|ref|ZP_04683738.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435114|ref|ZP_06574504.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338009|gb|EFE64965.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 224

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 74/224 (33%), Gaps = 7/224 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           ++    +  + E   GA    L R        +D  +    
Sbjct: 3   TRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +          V  RP  L    F              + +       A +  
Sbjct: 63  GLEAARLLLAPPPG----VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++     ++       +  +A +             +   LT RE E LT ++ G++
Sbjct: 119 AVRVVASGDALLAPSVTRRL--IADFARQRPAVRGKPALRLKALTERETEVLTLVARGQS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +++ I+ K   + R+ A+ +A  + +V
Sbjct: 177 NGEIAQTLVLAEQTVKTHVSRILTKLDLRDRAQAVVFAYESQLV 220


>gi|298248387|ref|ZP_06972192.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551046|gb|EFH84912.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 215

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 62/241 (25%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       +  L         +                    G       
Sbjct: 1   MEPIRVLIADDHPLFRDGLRTLLQSRTETEVLGEAAT---------------GEETIAKA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  +              L   ++           
Sbjct: 46  ATLQPDVILMDINMPGTNGIEATRRILHTS--------PHTGVLVVTMYEDDDSVFAAMR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D       +  +     I        +           K+         
Sbjct: 98  AGARGYLLKGADQDETMRAIQAVSRGEAIFSPVIAKRL----IRYFTPTKASTTPPQAFP 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L+ +++G  + EIA  L +S  TV N+++++  K     R  AI  A    
Sbjct: 154 ELTEREREILSLLAQGLNNAEIAQRLVLSLKTVRNHLSNVFNKLQVADRVQAIIRAREAG 213

Query: 245 I 245
           +
Sbjct: 214 L 214


>gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718]
 gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638]
 gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O26:H11 str. 11368]
 gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431]
 gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14]
 gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718]
          Length = 240

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 211

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQAERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILMLSS---FSEQDYVLPALEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVYQGNANFHPKVTPAL-------LGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 242

 Score =  131 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 74/247 (29%), Gaps = 26/247 (10%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
             +   +           + L R++ ++  +      +   + +             +  
Sbjct: 7   VDKRRIKLLIADDHQLFREGLKRILNMEDDLEVIGECHNGIQVLEF-----CNHTQPEIV 61

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +  +        +          +      +   +                 Y  
Sbjct: 62  LMDINMPIENGVVATERLRD--------MFPEIKVIILSIHDDESYVFETLRKGATGYLL 113

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLW-------------EIGLLAAYQANMFKSYDVH 179
              +   +   +  +      I                   E+G ++   A         
Sbjct: 114 KDMEAEALINAIRSVMTGHSYIHPKVTGKLINQLRRMTYLDEMGAVSGAAAGKETGVKFV 173

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G+D  LT RE E L  ++EGK++  I   L IS  TV N+++SI++K     R+ A+ +
Sbjct: 174 AGEDNPLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSILQKMEVDDRTQAVIH 233

Query: 240 AVRNNIV 246
           +++   V
Sbjct: 234 SIKFGWV 240


>gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 210

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  KPDIILMDLVMDEMDGVEATRAIIKEW--------PEAKIVVVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        D +LT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHD-DLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ ++
Sbjct: 151 EREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQLI 209


>gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
 gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp.
           2_A_57_CT2]
          Length = 217

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 75/240 (31%), Gaps = 29/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPL-DCTVSWTMRMYALTEYVGASHFLLVRW 66
           +NI+L  +       +  L    + +  +    +        +                 
Sbjct: 2   INILLCDDHAVVRMGLKMLLNNHEDMQVVGEASEGNEGIQQALE---------------- 45

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D +   A SE  K    +Q        +              
Sbjct: 46  LKPDVVVMDLSMP--HGKDGMS--ATSELKKLKPEIQIL---ILTMHDDEEYLFRAIQAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +     +     +   +  +      +       +  +  Y  ++ +     +     L
Sbjct: 99  ASGCILKSAPHDELLAAIRSVASGNAYLHPSATKRL--MEEYIGSVKQGNTDTFN---LL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E LT I++G ++ +IA  L IS  TV  +  ++M K   KTR   +AYA++  ++
Sbjct: 154 SDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLMEKLQMKTRPELVAYALKKGLL 213


>gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 245

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 73/236 (30%), Gaps = 16/236 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-SIVSSDW 82
            H       + R        +    +       G   F++           D  ++   W
Sbjct: 7   RHFDRALAAIERFQTTTSPRALIDAVRDAAAAYGYRSFVIAAAPKLACNAFDKRVLLRHW 66

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNR 129
           P              +  +     +       +               +       M   
Sbjct: 67  PEAWFGQYLQDNYQDHDPIAAHARQQTRAFCWSDAPWDRSDKKTAAVMDCAAHDYDMRRG 126

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTG 188
           +C   F +      +    P+           + L+A Y  N   +  +    +   L+ 
Sbjct: 127 FCVPIFGMRGYEAAISFGGPE-IDASPAATAAMELIAIYAMNQLMTMREPPARRQTTLSP 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E + W + GKT+ + A IL IS +TVN ++AS MRK    T++ A+  ++R  
Sbjct: 186 REREVVAWAAVGKTAWDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRG 241


>gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 211

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 65/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALTFVQKEKPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILMLSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------MGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV+  
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209


>gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 292

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 23/240 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V ++L  +D   +  ++H       +  +               L         L+  
Sbjct: 75  QPVRVLLVDDDPHMSRVIAHELLGDLRINLLGQGCS----VREGRRLISQNEFDVMLV-- 128

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +     F+L+  M          V+                 +     
Sbjct: 129 ---------DLNLGDGSGFELIEYMKAVRPMAEAVVISS--------MEDAQHALHAFEL 171

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y             ++ +   G  I  +    +           +   V+ GKD +
Sbjct: 172 GATGYLVKNSWFGNFPQAILQVVNGGASITPNLARRLLSKFEPPQANVEPLPVNQGKDNK 231

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G +S EI   L IS  T N +I +I RK   + R+ A+++A  + +
Sbjct: 232 LSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAVSFAANHGL 291


>gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
 gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5]
          Length = 243

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 15/242 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDS 76
            R    S L      + + + ++   S    +  L   +  +  ++   +  +EQ    +
Sbjct: 3   LRELSRSDLLLACTAIQQALNIEDQDSMHSLLSTLGNCLDFTCAIICLVEFQEEQPLFQT 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH---------TLPENITPPAGMD 127
           +V    P   +    + +  +   V Q+      P+                     G+ 
Sbjct: 63  LVQHQCPEPWLETYVVRKLWRTDPVFQQVRRSPEPLRWSQTQNRHSPNPALLEASRHGLT 122

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGR--IILRDRLWEIGLLAAYQANMFKSYDVHWG-KDF 184
           +         A  R  + L   + +   I       + LLA    +            D 
Sbjct: 123 DGIS--IGYGAGNRTLISLAGSRQQIHAISSLACRVLPLLAPLIHSASVRIAHRQDIPDT 180

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L W +EGK+++EI++IL ISR+TV  ++  I +K     R  AIA A+R  
Sbjct: 181 NLSERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAKALRAG 240

Query: 245 IV 246
           ++
Sbjct: 241 LI 242


>gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 211

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKLI-----KQYDETIKILMLSS---FSEQDYVLPALEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVYQGNANFHPKVTPAL-------LGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
 gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
          Length = 213

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALYFVQKEKPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------MGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 210

 Score =  131 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQEDIEVIGEAEN---------------GRQGYEKAMAL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +             +   +    F    +         
Sbjct: 47  RPDVILMDLVMEEMDGIESTKAILKDWS--------KAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++         M +  D    +  ELT
Sbjct: 99  AGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKM------MEKMSRRNDPVLHE--ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ +V
Sbjct: 151 NRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 237

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 70/248 (28%), Gaps = 28/248 (11%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           N+E   R   V   P   + +  ++  D +        +     G     LV +      
Sbjct: 3   NKEISIRVLLVDDHPHGREGMRDILSADSSFEIVGEAMS-----GEEAVALVEYLEPDLI 57

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +  + +  S         +        V   + +           Y  
Sbjct: 58  LMDIRMPGIGGLEATQRIKAS-----SPAAKIVMV---TVSDDITDLFEAIRRGAQGYLL 109

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEI---------------GLLAAYQANMFKSYD 177
                +     L  +      + ++    +                  A       K   
Sbjct: 110 KNLMPSAWLEYLRAVAIDETPMSKELAGRLLQEFTGSTSAVGTQTAEKAITPPQPDKHAA 169

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  ++ G ++ EI   LGIS NTV N++ +I++K     R    
Sbjct: 170 NRRTAATPLTDREKEILERVAYGDSNKEIGAKLGISENTVKNHLKNILQKLHLDNRVQLA 229

Query: 238 AYAVRNNI 245
            YA    I
Sbjct: 230 RYAHEQGI 237


>gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 15/229 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  +I                   G +   L          +D 
Sbjct: 4   PIRVLVCDDQMLIRTGLVTIIGAQPGFEVVGECGD-----GRAAVDLALRLRPDVVVMDV 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +A +       V      L    F+             + +      
Sbjct: 59  RMPVLDGIEATRLLAGAG------VAHPVKVLVLTTFNLDEYVYEALRAGASGFLLKDAP 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+  G+  +     ++  +    +       A   +        +  LT RE+E L  
Sbjct: 113 PDRLLHGIRTVATGAALLDPEVTRRL---VGRHAARIRPVPGAA-PEVPLTPRELEVLRL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++EG ++ EIA  L IS+ TV  +++ I+ K   + R  A+ YA R+ +
Sbjct: 169 LAEGLSNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL 217


>gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 243

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 17/235 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDL 86
            +  L A +       ++   +   +   G S    +   + ++  L   ++        
Sbjct: 9   RQLLLSAELATARTQTAFAQALERTSSAFGFSQVAFLNAPVSEDSMLTPLVIEGSVQPQF 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-----NITPPAGMD---------NRYCS 132
           +R     +  +   +LQR  +   P    L E     ++  P  +               
Sbjct: 69  LRDFDRQQLLRRCPMLQRVRDSVMPRAWHLLEKNISQDMELPRELHALLLSHNCPMGIVI 128

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREV 191
                   R+    +      + +  L E+ ++     +++     + G     L+ RE+
Sbjct: 129 PINSSDGQRLVFWFMG-NRSSLGQSELNELNMIMLQAHDIYNCIKRNDGSVLHMLSAREL 187

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 188 EVVRWTAQGKTSVEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKLI 242


>gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 248

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  +    + +  +                    GA       
Sbjct: 30  EPIRVLVVDDHALFRRGLEIVLAAEEDIQVVGEAGD---------------GAEAVEKAA 74

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     +D  +      +    +          V      +   +     +       
Sbjct: 75  DLLPDIILMDVRMPKRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIKA 126

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      I      ++  L  +++ + ++ +        
Sbjct: 127 GATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAPR 184

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  I
Sbjct: 185 LTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 244

Query: 246 V 246
           +
Sbjct: 245 L 245


>gi|21222068|ref|NP_627847.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|4753877|emb|CAB42040.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
          Length = 248

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 59/227 (25%), Gaps = 11/227 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     M  + E   GA   +L          +D  +     
Sbjct: 20  RLLVVDDQYLVRTGLATLLRAAPGMEVVGEASDGAEAVVLAARTRPDVVLMDIRMPGLTG 79

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +            +         F              + +        R+   
Sbjct: 80  IQATERILAQAV---DPAPRIL---VLTTFDLDEYVYGALRAGASGFLLKDAGPERLLAA 133

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FELTGREVECLTWISE 199
           +  +     +        +        +  ++     G        LTGRE E L  +  
Sbjct: 134 VTAVHGGDALFAPAVTRRLVEAFTRMTDTGRADPPDAGPPPPALTTLTGREAEVLQLVGR 193

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ E A  L IS  TV  ++   M K    +R+ A+  A    +V
Sbjct: 194 GLSNAEAADRLFISEATVKTHLNRTMTKLGLTSRAQAVVVAYETGLV 240


>gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 227

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 69/242 (28%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  + +     +     +      +            +               
Sbjct: 10  MSKIKVMIVDDHDMVRMGLKTYLMQDPGFEVIAEAGDGREAVELLERGL----------- 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D ++      +  + +                 +    F      +    
Sbjct: 59  REGQPDIILMDLMMPGMNGAEATKEVRSR--------FPDMKIVILTSFLEDDLVVQAVE 110

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T     +   L   +    ++  +    +                  G D 
Sbjct: 111 AGAVSYVLKTVSAEELIYALQGAYRGMPVMTGEVAQALT--------RGLRQRTVQGDDS 162

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE E L  I+EGK++ +IA  L IS  TV  ++++++ K   + R+    YA R  
Sbjct: 163 GMTEREKEVLLLIAEGKSNKDIAEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAHRQG 222

Query: 245 IV 246
            V
Sbjct: 223 WV 224


>gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score =  131 bits (330), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQALIRTGFATIIDAQPDLEVVGECGDGRAAVDLAVRLQPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V +    L    F+             + +       +++  G
Sbjct: 66  IEATRLLAGEG------VARPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPASQLLQG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +  +     +  LT RE+E L  +++G ++
Sbjct: 120 IRTVAGGAALLAPEVTRQL---VGRYAARVRPAEN-APAEVPLTPRELEVLLLMADGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  Y++ I+ K   + R  A+ YA R  +V
Sbjct: 176 SEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218


>gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012]
 gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC
           9905]
 gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74]
          Length = 240

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 209

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G   +      
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQDDIEVIGEAEN---------------GRVGYEKALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDVILMDLVMDEMDGIESTKLILNDW--------PEAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++        +   +      +D  LT
Sbjct: 99  AGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKM-------MDRLTNRTPILHED--LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ ++
Sbjct: 150 NREQEVLLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208


>gi|226359681|ref|YP_002777459.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226238166|dbj|BAH48514.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E     ++ +    D +  +       +    +  L              
Sbjct: 2   PITVLLVDDQELMRMGLNMVLDAQDDITVVGEASDGAAAVAAVRKL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  S              L    F      +      
Sbjct: 48  -EPDVVLMDVRMPVVDGVSATAQILESGV--------ASRVLVMTTFDLDEHAMGALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +  +     ++       +  L+ +  +           D  L
Sbjct: 99  ASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRRL--LSRFLDDGPAPLRDPEVLDV-L 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +S +T+ +++  I+ K   + R  A+  A    +V
Sbjct: 156 TEREREVLQLVATGLSNTEIAAQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGLV 215


>gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 234

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 14/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R +  R   V         L   +  +  +             G     L    +     
Sbjct: 13  RGEPIRVLIVDDHALIRRSLELALTAEPDIEVVGEAN-----DGLEAVELASRLMPDVVL 67

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +           +     +   V     +           Y   
Sbjct: 68  MDVRMPRQDGIEATRAIKE--------AVPSARIIMLTVSDEEEDLFEAIKAGATGYLLK 119

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              +  +   +  ++    +I      ++       +               LT RE+E 
Sbjct: 120 DVQIDEVPDAVRGVYEGQSLINPAMAAKLISEFQTLSRREAERPPQV-PAPRLTEREMEV 178

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++G  + EIA  L IS NTV N++ +I+ K    +R  A+ YAVR  ++
Sbjct: 179 LRLVAKGMHNREIAKALFISENTVKNHVRNILDKLQLHSRMEAVVYAVRERLL 231


>gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
          Length = 261

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 39/257 (15%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D           ++    M+ +++   G+    L +        +D  +   
Sbjct: 9   VIRVAIADDQELVRAGFAMVINSQQDMHVVSQTSNGSQIVELSKSQNPDIILMDVRMPVM 68

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +   + ++          +    F      +       + +     +   + 
Sbjct: 69  DGLEATRKILQQKTNEN------TKIIILTTFDLDEYVMAAIHAGASGFLLKDTEPETLL 122

Query: 142 IGLMLLFPKGRIILRDRLWEIG--------------------------------LLAAYQ 169
             +  ++    II       +                                 + A   
Sbjct: 123 NSIRTVYQGNAIIAPTATKRLIENMIQQGKVATNTTENSAANYTANYAAQESYDVQANPA 182

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   +S         ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K  
Sbjct: 183 AQATQSCAYTNSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIG 242

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R  A+ +A  N +V
Sbjct: 243 ARDRVQAVVFAYENGLV 259


>gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10]
          Length = 209

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +   +                G   +      
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQDDIEVIGEAEN---------------GRVGYEKALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDVILMDLVMDEMDGIESTKLILNDW--------PEAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++        +   +      +D  LT
Sbjct: 99  AGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKM-------MDRLTNRTPILHED--LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ ++
Sbjct: 150 NREQEVLLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208


>gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 219

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 70/242 (28%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I+L  +       +  +    D +  +           R+   +           
Sbjct: 1   MSPIRILLVDDQPLVRQGLRSVFAPLDGITVVGEAANGADAVRRVRETS----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  S              +   ++           
Sbjct: 50  ----PDVVLMDVNMPVLNGLEATRIICASTPT----ASVGTKVIMLTMYDQDEHVFEALR 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +        ++   +  +     ++         L+  +             +  
Sbjct: 102 VGASGFLLKDASPRQLDEAVRQVAHGEALLSPSVTR--QLIQEFVRRPAVRSSTTDLRS- 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE++    + +G  + EIA  L +  +T+ +++  + RK   + R+  + +A  N 
Sbjct: 159 -LTGREIDVFRLLVQGYGNAEIARKLVLGESTIKSHVQHLYRKLGVRDRAQVVIFAYENG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736]
 gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736]
 gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1]
 gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1]
 gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357]
 gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli
           H120]
 gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3]
 gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli
           E1167]
 gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736]
          Length = 240

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 71/230 (30%), Gaps = 15/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DL   M+    +      +      +G   +           +    +   +P   V   
Sbjct: 13  DLRMEMLKQQESAQVFALLEREVRSLGFDFYAYGVRHSIPFTRPKIDIYGSYPQAWVERY 72

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
                      +         V  +                 G+               +
Sbjct: 73  QQQNYAAIDPTILNGLRSTEMVVWSDALFGKSSVLWGEAREWGLRVGATLPIHTPD-SAL 131

Query: 143 GLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGK--DFELTGREVECLTW 196
            ++ +  +   I    L EI L    +                +    EL+ RE E L W
Sbjct: 132 SVLSVARECTAISAVELEEIRLRLRCIIELATMRLGELGHPSSQAEQLELSAREREILQW 191

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++GK+S EIA+ILGIS NTVN ++  I +K     ++ A AYA    ++
Sbjct: 192 TADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLGLI 241


>gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 214

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 30/239 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E     ++ +    D +  +                    G     L + 
Sbjct: 4   PIKVLLVDDHEMVRIGLAAVLGTEDGIEVVGEAGS---------------GEEGIRLAQE 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +  R +                 +    +    +        
Sbjct: 49  YHPDVVLMDLVMDGMDGIETTRQLMNQ--------FPNLKVIVLTSYLDDEKMYPVIEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T   + +   +        ++           A+   N F+          +L
Sbjct: 101 AFSYLLKTSRASEVADAIRAAARGQSVLESQV-------ASKMMNRFRHPQNEAPAHNDL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E L  +++GK++ +IA  L I   TV  ++ +I+ K   + R+ A  YA +N +
Sbjct: 154 TDREMEVLRLVAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212


>gi|256786843|ref|ZP_05525274.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770738|ref|ZP_06530116.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700937|gb|EFD68366.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 59/227 (25%), Gaps = 11/227 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     M  + E   GA   +L          +D  +     
Sbjct: 20  RLLVVDDQYLVRTGLATLLRAAPGMEVVGEASDGAEAVVLAARTRPDVVLMDIRMPGLTG 79

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +            +         F              + +        R+   
Sbjct: 80  IQATERILAQAV---DPAPRIL---VLTTFDLDEYVYGALRAGASGFLLKDAGPERLLAA 133

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FELTGREVECLTWISE 199
           +  +     +        +        +  ++     G        LTGRE E L  +  
Sbjct: 134 VTAVHGGDALFAPAVTRRLVEAFTRMTDTGRADPPDAGPPPPALTTLTGREAEVLRLVGR 193

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ E A  L IS  TV  ++   M K    +R+ A+  A    +V
Sbjct: 194 GLSNAEAADRLFISEATVKTHLNRTMSKLGLTSRAQAVVVAYETGLV 240


>gi|134103684|ref|YP_001109345.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916307|emb|CAM06420.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 218

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 35/242 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  + E        +    D L  +              +L                
Sbjct: 3   RVLLVDDQELMRMGFRMVLESQDDLEVVGEAGNGEEAVELARSL---------------R 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R +                 L    F      +    G   
Sbjct: 48  PDVVLMDVRMPVVDGVEATRRIVAEG---------SSKVLVMTTFDLDEYALAALRGGAG 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
            +         +   +  +     ++       +        + F   D    +D     
Sbjct: 99  GFLLKDTPPDGLVTAVRSVASGDAVVSPSVTRRL-------LDRFLGGDGGALRDPGVLD 151

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++G ++ E+A  L +S  T+  ++  I+ K   + R  A+  A    
Sbjct: 152 VLTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRDRVQAVVLAYETG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           SMS-3-5]
 gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9]
 gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5]
 gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7]
 gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W]
 gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli
           M863]
 gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v]
          Length = 240

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR
 gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 241

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 16/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                    +T         +    F      +    +  + +  ++P D V+    +  
Sbjct: 17  FARTMDMQEFTAVALRALRELRFDFFRYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAANY 76

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++       P+  +           +    + + +     +F+       L L 
Sbjct: 77  AVIDPTVKHSKVSSSPILASNELFRGCPDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLA 136

Query: 148 FPKGRIILRDRLWEIGLL----AAYQANMFKSYDV---HWGKDFELTGREVECLTWISEG 200
                 I       + ++    AA         +     +  D E +GRE + L W ++G
Sbjct: 137 RKDNP-ISLQEFEALKVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADG 195

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KTS+EI VI+G+  +TVN +  +I RK     R  A  YAV    +
Sbjct: 196 KTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQASRYAVAMGYI 241


>gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 223

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 13/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P        ++  +  ++            G      VR        +D 
Sbjct: 2   AIRVLLVDDQPLLRTGFRMILEAEGDLAVVGEAGD-----GLQAIDQVRALQPDVVLMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +   ++D           L    F      +       + +      
Sbjct: 57  RMPRMDGVEATRQITGPDRDG------PAKVLVLTTFDLDEYVVEALRAGASGFLLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++       +  L  Y  ++    +        LT REVE L  
Sbjct: 111 AHELVQAIRVVAAGEAMLAPSITRRL--LDKYADHLPSGEEPVPDALHTLTEREVEVLKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A  YA  + +V
Sbjct: 169 VARGLSNAEIAADLFVSETTVKTHVGHVLTKLRLRDRVQAAVYAYESGLV 218


>gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407]
 gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 592

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRILIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 11/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +  + E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQVLVRTGLVTIIDAQPDLEVVGECEDGQAAVDLAGRLRPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +       V Q+   L    F+             + +       +++  G
Sbjct: 66  IEATRLLAGAG------VPQQVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPSQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++  +  Y A +  +          LT RE+E L  I++G+++
Sbjct: 120 IRTVATGAALLDPEVTRKL--VGTYAARIRPAAGTPHDN--PLTPRELEVLRLIADGRSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L IS+ TV  +++ I+ K   + R  A+ YA R  +
Sbjct: 176 SEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217


>gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1]
 gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591]
 gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A]
 gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171]
 gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1]
 gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O111:H- str. 11128]
 gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042]
 gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1]
 gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1]
 gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1]
 gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010]
 gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180]
 gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271]
 gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591]
          Length = 240

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2]
 gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2]
          Length = 209

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   INVLLVDDHEMVRLGVSSYLSIQEDIEVIGEAEN---------------GKIGYEKALSL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDVILMDLVMDEMDGIEATKAILADW--------PEAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++        +   +       D  LT
Sbjct: 99  AGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKM-------MDRLTNRTPILHDD--LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ +
Sbjct: 150 NREKEVLLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGL 207


>gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099]
 gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099]
          Length = 248

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK----LDSIVSSDWPFDLVRCMALS 93
            +  +      + A                  Q+       DS +  ++P +        
Sbjct: 19  GIAQSEQLFDLLSAFALNFDCPWIAYGPLAPAQKVLKPAQADSAIMLNYPNEWKERYFKM 78

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARI 140
             DK   ++++  +    +  +                +     G+ +         A  
Sbjct: 79  GYDKIDPIIKKSRKGVGAIRWSEVYKDASTTDNERRVLDEAATFGLKSGVTVPLHGPAGS 138

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWIS 198
              +    P  R      +  + L A +               +  +L+ RE EC+ WI+
Sbjct: 139 FTIMSFAQPWDREFQNRTVTYLQLAALHFHVRVTKGTSSNALKQVQDLSLREKECILWIA 198

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK+S EI  ILGIS NTVN ++ + MRK  T +R+ A   A    IV
Sbjct: 199 RGKSSWEIGKILGISGNTVNFHLKNAMRKLDTASRTVAAIKATSLGIV 246


>gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O157:H- str. H 2687]
          Length = 240

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIAPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143]
 gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli
           TW10509]
 gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143]
          Length = 240

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|225865300|ref|YP_002750678.1| response regulator [Bacillus cereus 03BB102]
 gi|225788745|gb|ACO28962.1| response regulator [Bacillus cereus 03BB102]
          Length = 597

 Score =  131 bits (329), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 1   MNFEIQQVNIVLNRED--EQRTSFVSHLPTR----SDLLARMIPLDCTVSWTMRMYALTE 54
           M   ++QV   L+ +   EQ T  V ++P +     D++ R++ +D     T  +  + E
Sbjct: 343 MKERLEQVQGTLSVQSNVEQGTLIVCNIPLQTKPVHDII-RLLVVDDQALITNSLEQILE 401

Query: 55  -----------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
                      Y G+   +L          +D  +      + +      E  + +  ++
Sbjct: 402 NQTDFIVAGKAYDGSEALILCEQLEPDIVLMDIQMPEMNGIEAL-----LEMKRRWPNMK 456

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                    F    +  T        Y   +     ++  L L++  G  I +     I 
Sbjct: 457 IVLMTT---FEDSLQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIF 513

Query: 164 LLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                Q               + LT RE+E L  +S G     IA  L +S  T+ NY +
Sbjct: 514 EEMKLQREQLAKIKSTKQTFPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCS 573

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K     R  AI  A   NI+
Sbjct: 574 NLYSKLGVSNREEAIKMARTENIL 597


>gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae
           BGR1]
          Length = 235

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 70/231 (30%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D+   +   D +     ++      +G  +                 V  ++P   +   
Sbjct: 6   DVAHDICSSDSSRVVFDKLVGYASQLGFDYCCYGFRSPLPVGGESVKVFDNYPNGWMEHY 65

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRI 142
                      +++       +          +         G+       ++       
Sbjct: 66  RHMGYIDVDPTVEKAMTCSQTICWPGFDESKQSAFWQDARDHGLKVGIAQPSWSARGAFG 125

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-------GKDFELTGREVECLT 195
            L L   +G  I    L  + L  ++  N   S            G    LT RE + L 
Sbjct: 126 LLSLARGEGE-IDGHELKRLSLQLSWITNAVHSAMTAHVFDSLGLGAAISLTERERQVLR 184

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W  EG  + +I+  L IS +TVN +I  ++ K     +  A A AV  N++
Sbjct: 185 WTVEGLNAFDISEKLNISVSTVNWHIGKVLAKFGATNKVQAAARAVALNLL 235


>gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 220

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 13/228 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D LA ++ L   +         T   G      +     +   +D  
Sbjct: 2   IRIMIVDDQPLIRDGLAMLLNLRPELEVVG-----TASDGDEVVEKIEKLQPEIILMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 L    F+             + Y     + 
Sbjct: 57  MPRVNGVEGTRLVRGK--------FPEVKVLMLTTFNDSELIFEALEQGASGYLLKDMET 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   ++ +   G ++ +D   +I         +  S      +  +LT RE++ L  I
Sbjct: 109 DAIVQAILTVHGGGAVLPQDITAQIVKELKRTKVVDTSEQSVPNQIEQLTEREIDVLREI 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 169 GLGLNNKEIAEKLFITEGTVKNHVSNLIGKLELRDRTQAAIYAVRYGI 216


>gi|320011002|gb|ADW05852.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 226

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 8/224 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +S    +  + E   G     + R        +D  +     
Sbjct: 4   RVIIVDDQAMVRAGFAALLSAQSDIDVVGEAPDGRKGVEVSRSVHPDVVLMDVRMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           + RP  L    F              + +       A +   
Sbjct: 64  LAAAREL----LTPPKGAVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLISA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREVECLTWISEGKT 202
           + ++     ++       +  +A +              +   LT RE E L  I+ G +
Sbjct: 120 VRVVAAGDALLAPSVTRRL--IADFARRKPAAPSGGPALRLNGLTPREREVLELIARGLS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 178 NQEIAARLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLV 221


>gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 211

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G   F  VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEAFTFVRTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILILSS---FSEQDHVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVHQGNANFHPKITPAL-------LGRSAIKKEKESPFSMLTKREQEVLQEIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium]
          Length = 277

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 18/215 (8%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
                   TE +G  HF         +    +++   +P +  +  +  E      V   
Sbjct: 23  LARDFQRCTEALGFRHFACCSHVDPLKPPRRAVMLHSYPKEWAQLFSELELFDIDPVFLH 82

Query: 105 PTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFDVARIR--IGLMLLFP 149
            +    P F                  N     G+   Y      V   R       + P
Sbjct: 83  ASRSLVPFFWDTEAFNDELSPPQQELFNEAGRYGLTRGYTVPIHSVDAPRDFRASCSVVP 142

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEI 206
               +       + L+A Y  +                 L+ RE +CL   ++GK+    
Sbjct: 143 DSESLEPAAYQAVQLMAFYLYDTASKDAQQKDPPPVQQPLSRRERQCLELAAQGKSDWVS 202

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + ILG+S  TV+N++ +  R+    TR  A+ +A+
Sbjct: 203 SRILGLSERTVHNHVENAKRRLQVATRMQAVMHAL 237


>gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus
           casei BL23]
 gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 221

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 19/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  + +   G     +   D      +D ++      
Sbjct: 4   VLIVDDHEMVRLGLATYIGVQPDLEVVDQAENGQEGVDMALKDRPDIILMDLVMPVKDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +  +          +   +    F    +           Y   T     I   +
Sbjct: 64  TATKEILKAW--------PQARIIILTSFIDDAKVYPAMEAGAASYILKTATAEEIAKAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R++      ++              +    +  ELT RE E L  I++GK++ 
Sbjct: 116 RQTAKGERVLEPQVTTKM----------MNRMNHPQPQYDELTNREREVLQLIAQGKSNQ 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TV  ++++I+ K   + R+ A  YA+++ +V
Sbjct: 166 EIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207


>gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 217

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  +   V G     LV         +D  +     
Sbjct: 3   RILLVDDQTLVRQGIQTLLDLEADLTVVGTAVNGQQAIELVERLQPDVVLMDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F      I         Y     D + I   
Sbjct: 63  VAATREICRRW--------PHIGVIILTTFDDDEYVIEGLKAGARGYMLKDADSSDIVAS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     +I      ++    +  A    +       +  LT RE++ L  I+ G ++
Sbjct: 115 IRIVARGEALIQPSITRKVLAEFSRLAASAPATRPSPLAE-PLTEREMDVLHGIAAGHSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV NY++S++ K A + R+ AI  A    ++
Sbjct: 174 REIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRARELGLL 216


>gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11]
 gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088]
 gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE11]
 gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088]
          Length = 244

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 14  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 73

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 74  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 133

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 134 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 193

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 194 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 595

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 350 MNLQ-GQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 408

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 409 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRILIFT 463

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 464 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 516

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 517 KFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 576

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 577 GVRNKEEAVQKALEIGII 594


>gi|187251602|ref|YP_001876084.1| two component LuxR family transcriptional regulator [Elusimicrobium
           minutum Pei191]
 gi|186971762|gb|ACC98747.1| Two-component transcriptional regulator, LuxR family
           [Elusimicrobium minutum Pei191]
          Length = 225

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 75/246 (30%), Gaps = 29/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  + +++ +V+  +       +  +                  W   +   ++  G   
Sbjct: 1   MAEKKKKIRVVIVDDQTLFREGIKDVL-------------TGEKWLEVVGEGSD--GEEA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L +        +D  +         R +           +          F      I
Sbjct: 46  VALAKKLKPDVILMDIKLPKLDGISATRKIREDN-----PAINVLMLSS---FEDEAHVI 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N Y S     + +   +     +G +I +       L+      + K  D   
Sbjct: 98  EAIQAGANGYLSKMLPASELLNSIKTFTSEGLMIPQ------QLMGKLLHGLRKMGDNGT 151

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT  E++ ++ + +G ++ E+A  L  S  T+ N++ S   K    +R+ A+  A
Sbjct: 152 PSQALLTRTEIKVISLLGKGLSNKELATELSCSVKTIKNHLNSAFHKLGVGSRTEAVVKA 211

Query: 241 VRNNIV 246
           +   ++
Sbjct: 212 IEKGLI 217


>gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 214

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 76/240 (31%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   +    +  +   +  +                    G   + +V  +
Sbjct: 2   IRVVLADDHEVVRAGFKMILEQDAEIKVVAEAAD---------------GTQAYTIVSRE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +   EK            +   +F           G  
Sbjct: 47  RPDILLMDISMP-----PGQSGLVACEKIARD--FPGTRIVILTMFAEPEYLFYTLRGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y         +   +  +   G  I          +AA              + ++ L
Sbjct: 100 AGYVLKNSTSEELLSAVHAVAGGGSYIHPK-------MAALLTKQLVGAGEEEDRSYQQL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KTR+  ++YA+ + ++
Sbjct: 153 SNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKTRADLVSYALEHKLL 212


>gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
 gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR
 gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114]
 gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio
           fischeri ES114]
          Length = 250

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 17/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   +        +  + + +   ++L          K D  +  ++P    +    +  
Sbjct: 16  IKTCNNNKDINQCLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGL 75

Query: 96  DKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIG 143
            +Y  V+        P+   + E                 +G+   +       +     
Sbjct: 76  LEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGM 135

Query: 144 LMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L             + L        +L +   N  K        D  LT RE ECL W S
Sbjct: 136 LSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWAS 195

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EGK++ +I+ ILG S  TV  ++ +   K  T  R  +I+ A+   
Sbjct: 196 EGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNRCQSISKAILTG 241


>gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +VL  +     +    +    D +  +                    G     L   
Sbjct: 63  PIRVVLADDQRLVRAGFRSILDDEDDIEVVGEAAD---------------GVEAVRLAGE 107

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     +D  +  +      R +           L     L    F             
Sbjct: 108 LLPDIVLMDIRMPEEDGLAATRRITG------DERLSEVKVLILTTFDMDDYVFNALYAG 161

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +     +   +  G+ +      +I       +    A   N  +  D    +   L
Sbjct: 162 ASGFLVKDTEPMELLHGIRVCSRGDALIAPKVTRRLI---AEFTNRIRHPDP-SPRLNAL 217

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +  G T+DEIA  L +S  T   +++ IM K   + R+  +  A  + ++
Sbjct: 218 TAREHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGARDRTQLVITAYESGMI 277


>gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 214

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA               +D  +     
Sbjct: 7   RVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAGDGAEGVARAEELRPDIVLMDVKMPGTDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +                 L    F      I       + Y     D   +   
Sbjct: 67  IEALRRLRELANP--------ARVLVVTSFTEQRTVIPALRAGASGYVYKDIDPEALAGA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +           +      G+   LT RE E L  I++G+++
Sbjct: 119 IRSVHAGHVLLQPEVAGALL--------AQEEQGGGTGRGSTLTEREREVLGLIADGRSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 171 REIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212


>gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905]
 gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905]
 gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 215

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 16/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L          +D ++     
Sbjct: 3   RVLIADDHHVVRRGLLFFLKTQKDIEVVGEAKNGHEAVSLAESIQPDIILMDLVMPELDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +           ++         F      +         Y     +   + + 
Sbjct: 63  IQATKRIKAKF-----PKIEILM---LTSFSDRDHVVPAMEAGAAGYQLKDIEPDELVLS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    + +      N   S +        LT RE + L  +++GK++
Sbjct: 115 IRRIMRGENTLHPEATTTLEMDRQEAQNAPHSLNP-------LTPREQDVLAELTKGKSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++  TV  +I++I  K   + R+ A  YAV++ +
Sbjct: 168 REIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|118478620|ref|YP_895771.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043062|ref|ZP_03110301.1| response regulator [Bacillus cereus 03BB108]
 gi|118417845|gb|ABK86264.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196026546|gb|EDX65214.1| response regulator [Bacillus cereus 03BB108]
          Length = 597

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 1   MNFEIQQVNIVLNRED--EQRTSFVSHLPTR----SDLLARMIPLDCTVSWTMRMYALTE 54
           M   ++QV   L+ +   EQ T  + ++P +     D++ R++ +D     T  +  + E
Sbjct: 343 MKERLEQVQGTLSVQSNVEQGTLIICNIPLQTKPVHDII-RLLVVDDQALITNSLEQILE 401

Query: 55  -----------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
                      Y G+   +L          +D  +      + +      E  + +  ++
Sbjct: 402 NQTDFIVVGKAYDGSEALILCEQLQPDIVLMDIQMPEMNGIEAL-----LEMKRRWPNMK 456

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                    F    +  T        Y   +     ++  L L++  G  I +     I 
Sbjct: 457 IVLMTT---FEDSLQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIF 513

Query: 164 LLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                Q               + LT RE+E L  +S G     IA  L +S  T+ NY +
Sbjct: 514 EEMKLQREQLAKIKSTKQTFPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCS 573

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K     R  AI  A   NI+
Sbjct: 574 NLYSKLGVSNREEAIKMARTENIL 597


>gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 217

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + L  ++                   G     L+  +      +D  
Sbjct: 3   IRVLIVDDQSLFREGLKTLLTAQKDFEVVGEASN-----GEEALRLIANNHPHVVLMDLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F                Y       
Sbjct: 58  MPVLDGVRATGRIREL--------FPEVRVIILTTFDDDDLVFDGLRAGAIGYLLKDVSS 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +   +     +      ++  +A +  +   S          L+ RE+E L  +
Sbjct: 110 DNLFEAVRAAYRGEYFLQPSITAKV--VAEFARSPRPSSAKMAELTEPLSPREIEVLFLV 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGK++ EIA  L IS  TV N+++SI+ K   K R  A+  A    I+
Sbjct: 168 AEGKSNREIAEQLVISEGTVKNHLSSILSKLGAKDRLQAVIRAREAGIL 216


>gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS]
 gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC
           8739]
 gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a]
 gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           UMN026]
 gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299]
 gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS]
 gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a]
 gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026]
 gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1]
 gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1]
 gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280]
 gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299]
          Length = 240

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9]
 gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9]
          Length = 244

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 14  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVS 73

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 74  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 133

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 134 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 193

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 194 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 214

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G   F  V+        +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEEAFTFVQTKRPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKQI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +           +S          LT RE E L  I++G+++ 
Sbjct: 117 IAVHEGNTNFHPKVTPALL---------GRSVVKKENPFSMLTKREQEVLREIAKGRSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA +L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 168 EIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207


>gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           V583]
 gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1]
 gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2]
 gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3]
 gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1]
 gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6]
 gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis
           V583]
 gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22]
 gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1]
 gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2]
 gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200]
 gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3]
 gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5]
 gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96]
 gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704]
 gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1]
 gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           E1Sol]
 gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           Fly1]
 gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6]
 gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           CH188]
 gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis
           T11]
 gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62]
 gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF]
          Length = 210

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   IKVMLVDDHEMVRLGVSSYLSIQEDIEVVGEAEN---------------GKIGYEKALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      D  + +                 +    F    +         
Sbjct: 47  RPDVILMDLVMEEMDGIDSTKAILKDW--------PEAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   +   R++  +          ++     +         +LT
Sbjct: 99  AGYLLKTSTAHEIADAIRATYRGERVLEPEVT--------HKMMERLTKKQEPVLHEDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ +
Sbjct: 151 NREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208


>gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 213

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 13/220 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D       +   ++    +  + E   G     L+         +D  + +    + 
Sbjct: 6   LVDDQTLVRQGIRSLLALDGGIEVVAEACDGRQAVDLIPQVSPDVVLMDMRMPAMSGLEA 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ +              P  +    F      +         Y      + ++   +  
Sbjct: 66  LQLL--------SRAAALPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +   G ++       +           ++  V   +   LT RE E L  ++ G ++ EI
Sbjct: 118 VAAGGSLVQPVVTQRL----LSGLEQMRNDFVSLDRPDPLTDRETEILRLMASGFSNKEI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LG++  T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 174 ANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213


>gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676]
 gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676]
          Length = 592

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRILIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 219

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M A+ E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQALIRTGFTTIIDAQPDMAAVGECGDGRAAVDLAGRLRPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +       V      L    F+             + +       A++  G
Sbjct: 66  IEATRLLAGAG------VAHPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   ++       A   +  +     D  LT RE+E L  I++G  +
Sbjct: 120 IRTVASGAALLAPEVTRQL---VGRYAARIRPAEG-TPADVGLTPRELEVLRLIADGLAN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS+ TV  Y++ I+ K   + R  A+ YA R  +V
Sbjct: 176 SEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 218


>gi|325290865|ref|YP_004267046.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966266|gb|ADY57045.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 212

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 21/226 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         +A ++                   G       R  +     +D  +
Sbjct: 4   RVLVVDDHLLSRKGIASILSAHPMFEIAGEATN-----GQEAVEQARRLVPDLILMDIRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            +    +  R +           +     +   V   + +           Y     +  
Sbjct: 59  PNGSGLEATRRLKEE--------MPYVKIIILSVSDDVQDFFEAIKYGAQGYLLKNMEPE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +M +      I R+       LA      F         D +L+ RE E +  +S
Sbjct: 111 YWLDYIMSIVQGEAPISRN-------LATKILQEFS-IQKDDSSDNKLSEREKEVVQLVS 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +G ++ +I   L I+ +TV N++ +I+ K   + R   +A+A +N 
Sbjct: 163 QGLSNKDIGEKLHITESTVKNHLRNILAKLHLRNRVQLVAFAYKNG 208


>gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus
           fusiformis ZC1]
          Length = 215

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 67/222 (30%), Gaps = 16/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L          +D ++     
Sbjct: 3   RVLIADDHHVVRRGLLFFLKTQKDIEVVGEAKNGHEAVALAESIQPDIILMDLVMPEMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +           ++         F      +         Y     +   + + 
Sbjct: 63  IQATKRIKAKF-----PQIEILM---LTSFSDRDHVVPAMEAGAAGYQLKDIEPDELVLS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    + +         +           LT RE + L  +++GK++
Sbjct: 115 IRRIMRGENTLHPEATTTLEM-------DRQESQNAPHLLNPLTPREQDVLAELTKGKSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++  TV  +I++I  K   + R+ A  YAV++ +
Sbjct: 168 REIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209


>gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
 gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus
           lugdunensis HKU09-01]
          Length = 207

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 23  VSHLPTRSDLLARMIPLD---CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ +    D       L+    TV     + +         + L          LD ++ 
Sbjct: 1   MADIILVDDHHIVRQGLEFLLSTVEEFNVIESFANGASFISY-LSENQPPDIVLLDLVMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                ++   +                 L    +      I+      + Y     + A+
Sbjct: 60  EMNGIEVTEFL-KKNYSDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPAK 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    RII  +    +  +A                  +L+ RE++ L  + +
Sbjct: 112 LIETIRRVLAGERIIHPEAKTVMEAVAKKPH-----------YTNKLSKREIDVLREMVK 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN++
Sbjct: 161 GKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207


>gi|291451125|ref|ZP_06590515.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291354074|gb|EFE80976.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 223

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 11/225 (4%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V          A ++     +             G S   + R        +D  +   
Sbjct: 3   IVDDQGMVRAGFAALLSAQSDIDVVGEA-----ADGRSGIEVSRKTHPDIVLMDVRMPEM 57

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +             RP  +    F              + +       A + 
Sbjct: 58  DGLTATREL----LSPEPGTAHRPKVIMLTTFDVDDYVYEALHAGASGFLLKDSPPASLV 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + ++     ++          +        +       +   LT RE E L  ++ G 
Sbjct: 114 SAVRVIHGGNALLDPAVTRR--FIEDIVRRRPRPRRDPRLQLNGLTPRETEVLELVARGL 171

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L ++  TV  +I+ I+ K   + R+ A+  A  + +V
Sbjct: 172 SNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESGLV 216


>gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 247

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 71/227 (31%), Gaps = 23/227 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 140 NARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            GK+  EIA I  IS  TV  +++++  K   +T   A+  A+   +
Sbjct: 200 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGM 246


>gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 216

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+        +D  +      
Sbjct: 5   LLLVEDHHIVRRGLIFFLKTREEFEIVGEAENGEDALTFVQTKRPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHEGNTNFHPKVTPAL-------LGRSVVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA +L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 170 EIAAVLHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209


>gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15]
 gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15]
          Length = 210

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   IKVLLIDDHEMVRLGVSSYLSIQEDIEVIGEAEN---------------GRQGYEKAMTL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDVILMDLVMEEMDGIESTKAILKDW--------PEAKIIIVTSFIDDEKVYPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +       R++  +   ++    + +               ELT
Sbjct: 99  AGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHE--------ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ISEGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++ +V
Sbjct: 151 NRENEILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209


>gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
 gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083]
          Length = 227

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 69/230 (30%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           + R              + ++     +    +        G      V   +     +D 
Sbjct: 8   DIRVLIADDQQMVRQGFSVLLGAQPGIEVVGQA-----VDGLDAIAKVDELVPDVVLMDI 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +     +           L    F              + +      
Sbjct: 63  RMPELGGIEATRRITGERPEI--------RVLVLTTFDLDEYVYEALRAGASGFLLKDAS 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   + ++     ++       +  +A +     +       +  ELT RE E L  
Sbjct: 115 AEQLAEAVRVVAAGDALLAPGITRRL--IAEFSRLDHRPRAPLKTRVGELTERETEVLAL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 173 IAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 222


>gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM
           14365]
          Length = 254

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 81/244 (33%), Gaps = 28/244 (11%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEY----VGASHFLLVRWDLFQEQKLDS---IVSSDWP 83
           D + R+  L   V       ++ +      G   F    +   +         ++ + +P
Sbjct: 9   DCVERIFNLPSDVDANEHAQSILQDTLATYGFDFFCFAIYGAPRGAIAIDNYHLLLNAYP 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRY 130
                            VL        P+  T                       + +  
Sbjct: 69  NAWADRYYEKHYWYSDPVLAHCGRSPTPIDWTTVQNQPAQPASAEQVMREAHEHDLCSGV 128

Query: 131 CSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQANMFKSYDVHW-------GK 182
                DV+     L L         LRDR+     +A +  +                 +
Sbjct: 129 TVTVRDVSGRLGILSLATRDVYSAELRDRIRHAIPIAQFVLSHLVEKLEAHFHVRLEDLQ 188

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++L+ RE ECL W++ GKTS EI  ILGI+  T   ++ + M+K     RS A+A A++
Sbjct: 189 RYKLSERERECLRWVAAGKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQ 248

Query: 243 NNIV 246
           + ++
Sbjct: 249 HGVI 252


>gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 251

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 29/243 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-----KLDSIVSSDWPFDL 86
           +L  +       +    +  +    G  ++ L+R               + ++  WP   
Sbjct: 9   VLVILEECPNPDAVVNELEQVLHGSGFEYYGLLRHLQQTPAQQNSELRAAPLAGRWPERW 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------------TPPAGMDNRY 130
           ++  A  +  +   +++  T    P                             G+++ Y
Sbjct: 69  LQIYAAKKYIRIDPMVRYLTHAQRPFRWRESMAAFNSDAHRRRMEQMMVDAFGHGLEDGY 128

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-------DVHWGKD 183
                    I   L L   +   +    +  +  +A                 +     +
Sbjct: 129 LFPIHGRNGILGSLSL-GGRPIELSPVEIALLEAVARKTFWRLLELTGEAEALETVLPAE 187

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R  A+A A R+
Sbjct: 188 TPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRH 247

Query: 244 NIV 246
            ++
Sbjct: 248 GLI 250


>gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 25/243 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       ++ +    D +  +           +   L             
Sbjct: 3   EAIRVLIADDHTLLRRGLAVVLDTEDDIEVVGEASDGAEALHKAQELA------------ 50

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +           +  S        +     +         +       
Sbjct: 51  ---PDVVILDVRMPDTDGLTACAAIKRS--------VPDTKVIMLTSSDEETDLYEAVKS 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKD 183
             + Y   +     I   L  +      +      ++  G  A  +              
Sbjct: 100 GASGYLLKSVLPHTIPDALRAVQRGESQVSPSMAAKLMTGFAALARGADAAPAPGPVSSA 159

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE+E L  ++ G+ + EIA  L I+ NTV N++ +I+ K    +R  A+ YAVR 
Sbjct: 160 PKLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRMEAVVYAVRE 219

Query: 244 NIV 246
            ++
Sbjct: 220 KLL 222


>gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989]
 gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989]
 gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1]
 gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIEFQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 68/227 (29%), Gaps = 17/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
               +  +    D       L   +     +  + E   GA               +D  
Sbjct: 1   MADKIIRVLLVDDHQVVRRGLRTFLEIQEDIEVVGEASDGAEGVARTEELRPDVVLMDIK 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +   +             L    F      +       + Y     D 
Sbjct: 61  MPGTDGIEALRRLRELDNP--------AKVLIVTSFTEQRTVVPALRAGASGYVYKDVDP 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++  +    +                  G+   LT RE E L  I
Sbjct: 113 DALAGAIRSVHAGHVLLQPEVAGALL--------AQDDAGTGTGRGSTLTEREREVLGLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++G+++ EIA    +S  TV  ++++I+ K     R+ A  +AVRN 
Sbjct: 165 ADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWAVRNG 211


>gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli
           H489]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPEYFNQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|282862196|ref|ZP_06271259.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563221|gb|EFB68760.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 2/230 (0%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T    H    ++   R++ +D    W   +       G              ++  + 
Sbjct: 1   MTTPSTPHARESTERPIRVMVVDDHPMWRDAVARDLSESGFDVVATAGDGPGAVRRARAA 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNV--LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           V      DL        +     V        L         + +         Y   + 
Sbjct: 61  VPDVLVLDLNLPGMPGVQVCKELVGSHPALRVLVLSASGEHADVLEAVKSGATGYLLKSA 120

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        +        +       A+          K  +LT RE E L 
Sbjct: 121 STQELTDAVRATAAGDPVFTPGLAGLVLGEYRRLASDPAPAASDEPKAPQLTERETEVLR 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 181 LVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIETGL 230


>gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
 gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 84/233 (36%), Gaps = 18/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D +  +  L+           L    GAS F ++  D       D  V ++W  +L+   
Sbjct: 8   DYVDEISRLETAYDVFRYARRLGNDFGASRFSILTLDKQTSAISDLGVVNNWDPELIAVY 67

Query: 91  ALSEKDKYYNVLQR--------------PTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
             +   K   VL                  +   P    L   +     M    C    D
Sbjct: 68  DENGLSKASPVLGHFETGNRVMTYDMDTMLQERAPESAALARELFNDFDMKYGACCPVND 127

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVEC 193
               R GL+       ++  D    + LL+ Y  +             E   L+GRE++C
Sbjct: 128 GKGNRGGLVF-SGNELVLNPDDGAMLHLLSNYLYDHLVQISATSVTRSEMPSLSGREMDC 186

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L+  + GKTS E A  L +S +TV +Y+A   +K     R  A+A A+R  ++
Sbjct: 187 LSHAALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALRLGLL 239


>gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185]
 gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185]
          Length = 244

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 14  RRTMLLRFQRMEAAEEVYHEIELQAQLLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 73

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 74  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 133

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 134 LGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILR 193

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 194 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 18/231 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +   V       + LA +I L+  +         T   G   +  V         +D  
Sbjct: 1   MKVLVVDDQRIMREGLATIIGLEPGMEVVG-----TAMDGQDAYAKVLEFRPDVVLMDIR 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +                 L    F      I       + Y       
Sbjct: 56  MPGMDGIEGSALIRKH--------FPETKVLILTTFDDSELIIKVLENGVHGYLLKDMPS 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVE 192
             I   +  ++  G ++  D    +        ++        G        +LT RE E
Sbjct: 108 EAIIGAIRTVYNGGTVLQHDITSMLIKEFVKITDLNPDKSHPLGAQEPAELKQLTEREKE 167

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L  + +G  + EIA  L ++  TV N++++++ K   + R+ A  YAVR+
Sbjct: 168 VLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLRDRTQAAIYAVRH 218


>gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 78/244 (31%), Gaps = 24/244 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + I+L  +DE     +     +   L  +   +   +    +  +          
Sbjct: 1   MSSIPIKILLVEDDELFRLGLRVRLQQEPGLEIVAEAEDGETAIELLKQI---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      +  + +          VL   +    P+   L      
Sbjct: 51  -----PLDVVLLDVGLPGIGGIEACKQIKQQN--PLLPVLVFTSHSQKPLITRL------ 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  YC       ++ + L  +             EI    +Y+       +     
Sbjct: 98  IEAGAQGYCLKGIAAEKLVLALRSVASGASWWDATATQEIRSSLSYETPQL-EPENRAKL 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LTGRE E L+ ++ GKT+ EIA  L I+  TV  +I +I++K     R+ A+  A++
Sbjct: 157 SNPLTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQAVLVALQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 KQLI 220


>gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 214

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + E     +         +  +                    G     LV  +
Sbjct: 2   IRIAVVDDHEMVRKGIISYLLTEPEIEIVGEASS---------------GHEGAALVLKE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++ +    +  + +  S          +   +    F+   +         
Sbjct: 47  RPDVVLMDLLMENGSGIEATKEILKS--------YPQCKIIIITSFYDDEQVFPAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     +   ++       +I      ++         M +          ELT
Sbjct: 99  FSYMLKTATADEVLDCILKAARGEPVIEPKVATKM---------MGRLRGREKKPHEELT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I EG T+ EI+  L I   TV  ++++I+ K +   R+ A  YA +N ++
Sbjct: 150 ERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVSDRTQAAVYAHQNGLI 208


>gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 213

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 76/242 (31%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V +++  +       +  L    + +  +                    G     L 
Sbjct: 1   MDKVRVLIADDHALVREGLRRLLELDERIEVVGEAGD---------------GQGAINLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +         + +     +    ++           +   + +    
Sbjct: 46  RKYRPDVILMDVNMPGTDGVAATQVIKKEMPETD--IIALT-------VYEDEQVVEMVK 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +     II           A   A      +     + 
Sbjct: 97  AGVSAYVLKDVGPDELTSTIFKVREGNVIIHPRV-------AGQVAKELVRQNRRRD-EM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  + +G ++ E+A  L IS  TV N++ SI RK   K R+ A+ YA++N 
Sbjct: 149 KLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLTSIFRKLEVKDRTQAVIYALKNK 208

Query: 245 IV 246
           +V
Sbjct: 209 VV 210


>gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 247

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 23/228 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        ++ K   I+ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFTTPKARKAKP--IILSNYPDSWLKSYIASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAVQCVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWIS 198
             K        +RD+  +I +      +                + +L+ RE + L W++
Sbjct: 140 NAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHELFPPTANRKLSSRETDILKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK   EIA I  IS  TV  +++++  K   +T   A+  A++  +V
Sbjct: 200 MGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMGMV 247


>gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 214

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 30/239 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E     ++ +    D +  +                    G     L + 
Sbjct: 4   PIKVLLVDDHEMVRIGLAAVLGTEDGIEVVGEAGS---------------GEEGIRLAQE 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +  R +                 +    +    +        
Sbjct: 49  YHPDVVLMDLVMDGMDGIETTRELMKQ--------FPNLKVIVLTSYLDDEKMYPVIEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T   + +   +        ++           A+   N F+          +L
Sbjct: 101 AFSYLLKTSRASEVADAIRAAARGQSVLESQV-------ASKMMNRFRHPQNEAPAHNDL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E L  +++GK++ +IA  L I   TV  ++ +I+ K   + R+ A  YA +N +
Sbjct: 154 TDREMEVLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212


>gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 221

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      VR +      +D  +      
Sbjct: 17  LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGI 76

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 77  EATKQI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 128

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +           +S          LT RE E L  I++G+++ 
Sbjct: 129 IAIYEGNANFHPKVTPALL---------GRSAVKKENPFSMLTKREQEVLQEIAKGRSNK 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 180 EIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 219


>gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 14/229 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S    +    D       L   +     +  + E   G      +     +   +D  +
Sbjct: 1   MSGPVRVMIVEDQALMREGLRTLLDLEEGVEVVGEAADGVEALERLPGARPEVVLVDVRM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L+  +                 +    F                Y        
Sbjct: 61  PRMDGIQLIERLGREH--------PEVAAIILTTFDDDEYVFRGLRAGARGYILKDTPSE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWI 197
            +   +  +     ++       I L    +                 L+ RE+E L  +
Sbjct: 113 ELAAAIEKVHRGEAVLD----GPITLKVISELGRLSKGPAGPQPGSGGLSEREMEVLRLV 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L I+  TV N+I+SI+RK   + R+ A  YA+    +
Sbjct: 169 ASGASNREIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERGWI 217


>gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 219

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 15/227 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         +A ++     +             GA    +VR        +D  +
Sbjct: 6   RVVLVDDQALLRAGIATILSAHPGIDVVGEAGT-----GAQALDVVRATRPDVVCMDVQM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +           L     +    F+     +         Y   T    
Sbjct: 61  PDMDGLEATRRIVA------DPGL-HAAVVVLTTFNREDYLVEALHAGAVGYLLKTSRPE 113

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   ++       ++  +      ++A   A   +           LT RE + L  ++
Sbjct: 114 QLTEAVLSAAAGEGLLSPEVTR--AVIARAVAER-RPARPAPQPVVPLTEREQDVLALVA 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G  +DEIA  L +SR TV  ++++++ K   + R  A+ YA  + +
Sbjct: 171 RGLNNDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVYAHEHGL 217


>gi|256391148|ref|YP_003112712.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357374|gb|ACU70871.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +  T     + E   GA+   L +        +D  +     
Sbjct: 6   RILLADDQALLRGTFRLLLDSTPDFEVVAEAGDGAAAVKLAQELCPDLVLMDIRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     L    F                +     D   +   
Sbjct: 66  LEATRLIAA------DPALGSVKVLILTTFEQDEYVAEALRAGAGGFLGKGVDPEELLRA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+A + A    +          LT RE+E +T ++ G ++
Sbjct: 120 IRIVAGGNSLLSPAATR--ALIARFLAQPSDTAPTVSAPLDALTARELEVVTLVATGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L ++  T   ++   M K   + R+  +  A  + +V
Sbjct: 178 EEIAGQLFVTPLTAKTHVNRAMTKLGARDRAQVVVIAYESGLV 220


>gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 592

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRILIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
 gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRSSVREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302]
 gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412]
 gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302]
          Length = 244

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 14  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 73

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 74  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 133

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 134 LGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 193

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 194 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|52142219|ref|YP_084610.1| response regulator [Bacillus cereus E33L]
 gi|51975688|gb|AAU17238.1| response regulator [Bacillus cereus E33L]
          Length = 597

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 1   MNFEIQQVNIVLNRED--EQRTSFVSHLPTR----SDLLARMIPLDCTVSWTMRMYALTE 54
           M   ++QV   L+ +   EQ T  V ++P +     D++ R++ +D     T  +  + E
Sbjct: 343 MKERLEQVQGTLSVQSNVEQGTLIVCNIPLQTKPVHDII-RLLVVDDQALITNSLEQILE 401

Query: 55  -----------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
                      Y G+   +L          +D  +      + +      E  + +  ++
Sbjct: 402 NQTDFIVAGKAYDGSEALILCEQLEPDIVLMDIQMPEMNGIEAL-----LEMKRRWPNMK 456

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                    F    +  T        Y   +     ++  L L++  G  I +     I 
Sbjct: 457 IVLMTT---FEDSLQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIF 513

Query: 164 LLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                Q               + LT RE+E L  +S G     IA  L +S  T+ NY +
Sbjct: 514 EEMKLQREQLAKIKSTKQTFPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCS 573

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K     R  AI  A   NI+
Sbjct: 574 NLYSKLGVSNREEAIKMARTENIL 597


>gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3]
 gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4]
          Length = 269

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 91/263 (34%), Gaps = 22/263 (8%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSD--LLARMIPLDCTVSWTMRMYALTEYVGA 58
           M +  Q +   + ++ E     +  +       ++ ++            +  +T+ V  
Sbjct: 1   MIYNTQNLRQTIGKDKEM---GMKDINADDTYRIINKIKACRSNNDINQCLSDMTKMVHC 57

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
            ++LL         K D  +  ++P    +    +   KY  ++        P+   + E
Sbjct: 58  EYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLIKYDPIVDYSNSNHSPINWNIFE 117

Query: 119 NITPPA------------GMDNRYCSLTFDVARIRIGLMLLFPKGR----IILRDRLWEI 162
           N                 G+   +             L     +       +       I
Sbjct: 118 NNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGMLSFAHSEKDNYIDSLFLHACMNI 177

Query: 163 GLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            L+     + ++  ++   K + +LT RE ECL W  EGK+S +I+ ILG S+ TV  ++
Sbjct: 178 PLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEGKSSWDISKILGCSKRTVTFHL 237

Query: 222 ASIMRKTATKTRSGAIAYAVRNN 244
            +   K  T  R  +I+ A+   
Sbjct: 238 TNAQMKLNTTNRCQSISKAILTG 260


>gi|326776667|ref|ZP_08235932.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657000|gb|EGE41846.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 14/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R                ++  +  +    +        G      V         +D 
Sbjct: 5   PIRAVIADDQMMVRQGFTVLLNAEPDIEVVGQA-----VNGLDAVAKVAELAPDVVLMDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  +E             L    F              + +      
Sbjct: 60  RMPELGGIEATRRITSAEGS-------AVKVLVLTTFDLDEYVYEALRAGASGFLLKDAS 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++  +    +  +  +             +  ELT RE E LT 
Sbjct: 113 ADELAHAVRVVAAGDALLSPNITKRL--IVEFSRTAGAPRPPLKARVKELTERETEVLTL 170

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EI+  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 171 IAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLV 220


>gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 73/235 (31%), Gaps = 15/235 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +      R           +  + ++     +             G      V       
Sbjct: 1   MTGSRPVRVLIADDQMMVREGFSVLLGAMPDIEVVGEA-----VNGREAVRQVAALDPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +  ++             L    F              + + 
Sbjct: 56  VLMDIRMPELSGIEATREIVAAD--------AAARVLILTTFDLDEYVYQALRAGASGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  ++  G+ ++     ++       +    +  A   ++     G+  ELT RE 
Sbjct: 108 LKDASARQLAEGVRVVASGDALLAPGVTRRLITEFSRLAERPQAPGP--GQYGELTERET 165

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I++G ++ EIA  L ++ +TV  +++ I+ K + + R+ A  +A    +V
Sbjct: 166 EVLVQIAQGLSNAEIADRLFVAESTVKTHVSRILVKLSLRDRTQAAVFAYEAGLV 220


>gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1]
 gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1]
 gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli
           E482]
 gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82]
          Length = 240

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIEFQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231]
 gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19]
          Length = 234

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 20/242 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + +   +  + + +  D +      +       R+                 +
Sbjct: 2   INVGLVDDQQLVRAGFNMVLSSQDDIQIAWEANNGAEALERIE---------------VE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +            +    +    F +    +       
Sbjct: 47  PVDVVLMDVQMPIMDGISATKELVTRGLMG--PNDEPLRVIILTTFDSENYVMEAVENGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---GKDF 184
           + +         +   +  +  +  +I      ++           K   +         
Sbjct: 105 SGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIRSGQTDKKPDGLKHINEDLIE 164

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I+ GK++ EIA  L IS  TV  ++  ++ KT ++ R  A+ +A +  
Sbjct: 165 PLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFAFKRG 224

Query: 245 IV 246
           +V
Sbjct: 225 VV 226


>gi|209863940|gb|ACI88885.1| AlnR6 two component response regulator [Streptomyces sp. CM020]
          Length = 218

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 11/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   + +     +     +  + E   GA    L          +D  +   
Sbjct: 1   MTTVLIVDDQALQRLGFSMLLEQHPDLTVVGEATHGAEAVRLTAELRPDVVLMDVRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  S          R   L    F              + +         + 
Sbjct: 61  DGIEATRRIVESGG--------RSRVLVLTTFDLDEYAYAALRAGASGFLLKDALPDELT 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     +I      ++  + A+ A++  +      +   LT RE E LT I+ G 
Sbjct: 113 AGIRAVASGDAVIAPGLTRKL--IDAFSAHLPGTTPAQDRQLTALTTREREVLTAIATGW 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA    ++ +TV ++++ I+ K   + R  A+ +A    +V
Sbjct: 171 SNTEIANRFSLAESTVKSHVSHILAKIGARDRVQAVIFAYDMGLV 215


>gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 220

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 67/241 (27%), Gaps = 23/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ IVL  +       +  L +  D L  +               L             
Sbjct: 3   DRIQIVLADDQALFLEGLKTLLSLDDSLEIVGECHNGQEALEACRRL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   +D  +         + +           L     L    F            
Sbjct: 50  --RPQIVLMDLNMPVMDGVAATKAIKQE--------LPEVNVLTLTTFDDDERVFEALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y        ++   +  +      +      ++    +  +               
Sbjct: 100 GSSGYLLKDTPSKQLVEAIRAVSSGESFLQPSIASKVLAEFSRMSGPAAVKKAPVQLREP 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L W+S G ++ EIA  L ++  TV N++++++ K     R+ A   A    +
Sbjct: 160 LSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVLDRTQAALMARDLGL 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 67/233 (28%), Gaps = 16/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            E   R           + +  ++ L   +             G     LV         
Sbjct: 5   EEKPVRVVVADDQTVVREGIVMLLGLLPGLEVVGAAGD-----GEEAVRLVGELAPDVVL 59

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +        Y   Q         F                Y + 
Sbjct: 60  MDLRMPRCDGVEATRRVRAE-----YPGTQVV---VLTTFGDDESLFPALRAGARGYLTK 111

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 I   +  +      +       +         +  S +        LT REVE 
Sbjct: 112 DAGGEEILRAVRSVVSGQAGLAPSVQRRLLERLDRPGTVVTSPEEAPD---GLTVREVEV 168

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+EG ++ EIA  L +S  TV  +I ++  KT  K R+ A+ YA R  +V
Sbjct: 169 LVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKDRAQAVRYAFRKGLV 221


>gi|300088236|ref|YP_003758758.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527969|gb|ADJ26437.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 232

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 71/224 (31%), Gaps = 13/224 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     M  + E   G     LV         +D ++    
Sbjct: 4   TRVLIADDHAVLREGMRRMLEQEKDMDVVGEASDGEEAVSLVDELKPDVVLMDIVMPKLT 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  + +          V      L    +  +   +       + Y   +     I  
Sbjct: 64  GVEATKLIKK--------VHPSTCILILTAYSDIRYILGLLEAGASGYLLKSARADEIVG 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++      ++        N+ K      G+  +L+ RE+E L   + G +
Sbjct: 116 AIRAVRAGESVLDSMATRKL---LERVVNLSKEVPDEKGR-GQLSPREIEILRLAARGLS 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L +S  TV  ++++I  K    +R+ AI    R   V
Sbjct: 172 NRDIAEKLELSMRTVKAHLSNIFNKMRCSSRTEAIVKGFREGYV 215


>gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
 gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4]
 gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15]
          Length = 592

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRILIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDAQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 211

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAANGEEALTFVQAERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILMLSS---FSEQDYVLPALEAGADGYQLKEVQPDQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +                       LT RE E L  I++G+++ 
Sbjct: 117 VAVYQGNANFHPKVTPAL-------LGRSAVKKEKENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 62/225 (27%), Gaps = 11/225 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             +  L      L R               A     G                +D  +  
Sbjct: 1   MAIQILLVDDQYLIREGIASLLELEEDLEVAGMAANGKEAIKQAIDLKPNIILMDIRMPE 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +    +  S        L     +    F      +         Y         +
Sbjct: 61  LNGVEATAKIKQS--------LPHCQIIMLTTFDDEELIVQSLLAGACGYLMKDIPPDDL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + L       +  +   ++                    D  LT RE+E L  +++G
Sbjct: 113 GQAIKLADAGVFQLAPEVAGKLI---GSLKTQRAGDAPKLPTDTPLTTRELEVLKLLAKG 169

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T+ EIA    +S  TV N++++I+ +   + R+ A  YAV + +
Sbjct: 170 NTNKEIAKAFNLSEGTVKNHVSNILMRLGLRDRTQAAVYAVEHGL 214


>gi|291456580|ref|ZP_06595970.1| putative two-component regulator [Bifidobacterium breve DSM 20213]
 gi|291381857|gb|EFE89375.1| putative two-component regulator [Bifidobacterium breve DSM 20213]
          Length = 268

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 69/263 (26%), Gaps = 43/263 (16%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + +   GA    +          +D  +     
Sbjct: 8   RVIIADDQELVRAGFAMVIGSQQDMEVVAQASDGAEAVTMAETLHPDVVLMDVRMPGMDG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +            Q    +    F      +       + +     +   +   
Sbjct: 68  IEATRRITSLTAGTD--GTQPTRVIILTTFDLDEYVMAAINAGASGFLLKDTEPETLLNS 125

Query: 144 LMLLFPKGRIILRDRLWEI-----------------------------------GLLAAY 168
           +  +F    II       +                                   G + A 
Sbjct: 126 IRTVFQGNAIIAPSATKRLIEKMMQDGYAQHGSLSGGVSNASLNGNACGVADTTGTVGAT 185

Query: 169 QANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            A+             +     LT RE E L  I+ G ++ EIA  L IS  TV  ++A 
Sbjct: 186 GADSTNGIGTAHPTYTDPELELLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAH 245

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K   + R  A+ +A  N +V
Sbjct: 246 ILAKINARDRVQAVVFAYDNGLV 268


>gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 59/222 (26%), Gaps = 8/222 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   G     L R        +D  +     
Sbjct: 4   RVLLADDQALLRATFRILIDSCEDMAVVGEASDGTEALELTRAHDPDIVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F T            + +         +  G
Sbjct: 64  LAATSAICA------DPELAATRVLILTTFETEDYVAQALRAGASGFLGKDVTADTLLAG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++       +                      ELT RE E +   +EGK++
Sbjct: 118 LRTVASGEALLSPAATRTLITNFLMTPAPGTHLAPPQS-LSELTDREREVMGLAAEGKSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA IL +S  TV  +I   M K   + R+  +  A +  +
Sbjct: 177 TEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218


>gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     VS   T    +  +   D                G +   L    
Sbjct: 2   IKVLFVDDHEMVRIGVSSYLTAQPDIEVIGEADN---------------GKTAIDLALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMKEMDGIEATRRIIEQW--------PEAKIIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++  +   ++ +              H     ELT
Sbjct: 99  TSYMLKTSKASEIAEAVRSTYHGQSVLEPEVTGKMMV--------KMRQKNHQLPHEELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++GKT+ +IA  L I+  TV  ++++I+ K   + R+ A+ YA ++++V
Sbjct: 151 SREMEILLLMTQGKTNQDIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHSLV 209


>gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 239

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L  M  L C  SW   + A T  +G    L             + + SD+        
Sbjct: 5   DELLTMSGLGCRRSWFEALKANTCALGCDGLLFALKSDGNADNSQAALLSDYSQAWRAIY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARI 140
             ++  +   V+        P+                  +   G+          +A  
Sbjct: 65  DANDYSRIDPVVSHCMSSTSPIVWNDSIFKTPLQLEFREESKGHGVVQGVSLPLHGMAGQ 124

Query: 141 RIGLMLLFPKGR-----IILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVEC 193
              L +             +   L  + L+  Y  + F S       +   +L+ RE+E 
Sbjct: 125 VGVLSVRLDSIPQHQLKYHIARILPGLALIRDYAVDTFLSLADEREPNNIVQLSHRELEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT+ EIA IL  S   +N + A + +K    +R  AI  A++  ++
Sbjct: 185 LKWSAFGKTTWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIVKALQTGLL 237


>gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 218

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 16/218 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       L   +     +  + E   GA    L R  L     +D ++      +  R
Sbjct: 10  DDHRVVRQGLRDFLELQGDIEVVGEASSGAEGVQLARDLLPDIVLMDLVMPGIDGVETTR 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +          V      +    F    +           Y         +   +    
Sbjct: 70  QIKT--------VSPSSKVIVLTSFSDDNKVFPAIKAGAISYLLKDISPEELAHAIRAAQ 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  +   ++      + +  +S +       +LT RE++ L  +++G ++ EIA 
Sbjct: 122 RNEAVLHPEVAAKL----MQEFSAPRSSETTVD---QLTPREMDVLRLVAKGMSNKEIAD 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  T   ++++I+ K     R+    YA+R  +V
Sbjct: 175 TLVISEKTTKTHLSNILSKLHLADRTQVAIYALRKRLV 212


>gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 233

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +           ++ A    VG  +        +   +    + +++P    +    +  
Sbjct: 8   LESTRSEHDAYEKIAAAVREVGFEYSAYYLHTPWPLSRPKIYMLTNFPEAWQQRYHAARY 67

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                V++   + + P+  +                 G+   Y         +   + + 
Sbjct: 68  VDVDPVIRHARQSYAPIIWSDAVFEETPHLWQEAQAHGLRYGYSLAAVSNCGVAGMMSMA 127

Query: 148 FPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
              G +  R+       +  +   A           +      ELT REVE L W+++GK
Sbjct: 128 RSHGPLTRRELQQQELKMRWLVNAAHLAITRAVLPKLSPDNAIELTAREVEVLKWVADGK 187

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EI++I+ IS  TVN ++ + + K  T   + A+A A    ++
Sbjct: 188 TASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAAMLGLL 232


>gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 13/231 (5%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R           +  + ++     +             G      VR        +D
Sbjct: 4   DAIRVLIADDQMMVREGFSVLLGAMPDIEVVGEA-----VNGREAVERVRELAPDIVLMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +  +              L    F              + +     
Sbjct: 59  IRMPEMNGIEATREIVAAGG--------AAKVLVLTTFDLDEYVYQALRAGASGFLLKDA 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++  G+ ++     ++       +    +  A   +          ELT RE E L 
Sbjct: 111 SARQLADGVRVVAAGEALLAPSVTKRLITEFSRLAETPRLSASVHAAYGELTERETEVLV 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 171 LIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 221


>gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 217

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 27/223 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R+  +D        +    E             G +   LV         +D I+     
Sbjct: 4   RIAVVDDHHVVRKGLIYFLETYHDFTIVGEAEDGEAALTLVEKVQPDIVLMDVIMPGING 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + +        +  +                 I       N Y     D   +   
Sbjct: 64  IEATKKIKQK-----WPTVHVVVLSS---SAERESVIPALQAGANGYQLKEVDPEMLAET 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKT 202
           +  +      +             +        +     +  +LT RE + L  +++G++
Sbjct: 116 IRAVCSGESRLHPKVT-------KHVLTRMNGDESEEEKRLRDLTNREKDVLRELAKGQS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L IS  TV  ++++I  K     R+ A  +A++  I
Sbjct: 169 NKEIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKYGI 211


>gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 240

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 15/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R +   +   +   +     +    E +G  +F  +        +    + S +P D V+
Sbjct: 10  RGETEIQFQAVTAVLQLKALLQKHIETLGFDYFAFLIQHPVPFTRPRIFLFSTYPEDWVK 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         V  T                 G+ + +        R 
Sbjct: 70  HYESENYYAVDPVLLLCQRPGHGVEWTRDLFTGAGNLWAEANAYGLMSGFSCSAMASNRA 129

Query: 141 RIGLMLLFPKGR------IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L +   +        + L  +L  +  L+           +    + + + RE+E L
Sbjct: 130 IGILSIASGQQSKTQHLRVELEVKLHFLAELSLRVLERLNDNAMVVLSN-DFSQRELEIL 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKTS EI++IL IS +TVN +  ++ ++     ++    YA    ++
Sbjct: 189 KWTAEGKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
 gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM
           12442]
          Length = 216

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G     +      +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMLLNLRSELEVVG-----TANDGDEVVRIAEQLQPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F+             + Y     +   I
Sbjct: 56  INGVEGTRLIRER--------FPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D   +I         +  S      +  +LT RE++ L  I  G
Sbjct: 108 VQAILTVHAGGAVLPQDITAQIVKELKRTKVVEISGQNQPKQVEQLTEREIDVLREIGLG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 168 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 212


>gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J]
          Length = 253

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS---------------IVSS 80
           ++           M      +G   F      +  + +                   + S
Sbjct: 11  LLTAGSHAEIAAFMERHAGNLGYGRFFYSPLLVAGDARHFFKDDHNVVAAEMLYTKNIFS 70

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE---------NITPPAGMDNRYC 131
            +P   +R    +       V++  T    P+     +         +     G+     
Sbjct: 71  TYPASWIRRYQEAGHVAADPVVKLITTSNLPIHWDADDLQAARSPVFDEAREHGLATGIT 130

Query: 132 SLTFDVARIRIGLML---LFPKGRIILRDRLWEIGLL-AAYQANMFKSYDVHWG--KDFE 185
                    R    +     P+      D +  + +L A +     +  D          
Sbjct: 131 IPINGFDHTRALFSVTSDQAPERSQRHTDAISGLAVLTALHLHEAVRRLDASMSNAPIPS 190

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL W + GKTS EIA IL +S  TV  +I +  +K     R  A+A A+   +
Sbjct: 191 LTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQAVARAISLRL 250

Query: 246 V 246
           +
Sbjct: 251 I 251


>gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 210

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS        +  +   D                G     L    
Sbjct: 2   IRVLLADDHEMVRIGVSAFLASQPDMEVVGEADS---------------GKRAVELALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDIILMDLVMPEMDGIEATKQIIAQW--------PEAKIIVVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   F    ++  +   ++      +  +            ELT
Sbjct: 99  TSYMLKTSKANEIANAIRATFYGQSVLEPEVTNKVMAKMKQKKELL--------PHEELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++GKT+ EIA  L I+  TV  ++++I+ K   + R+ A+ YA ++++V
Sbjct: 151 NREMEVLLLMAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAFKHSLV 209


>gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC
           O1]
 gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli
           CFT073]
 gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89]
 gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88]
 gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39]
 gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972]
 gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605]
 gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1]
 gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11]
 gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88]
 gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39]
 gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82]
 gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972]
 gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli
           SE15]
 gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034]
 gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1]
 gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1]
 gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1]
 gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101]
 gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972]
 gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146]
 gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3]
 gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1]
 gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3]
 gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           WV_060327]
 gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1]
 gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli
           H252]
 gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli
           H263]
 gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2]
 gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1]
 gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional
           activator [Escherichia coli AA86]
 gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605]
          Length = 240

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 13/230 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             +L R   ++        +    + +   ++ L         +      +++P   V  
Sbjct: 11  RTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
                      VL         +                    G+            R  
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRAL 130

Query: 142 IGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTW 196
             L        +  I+  +   ++ LL           +       +   + RE E L W
Sbjct: 131 GFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKW 190

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 191 TAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 224

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 12/224 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   ++    M    E   A     L +        +D  ++   
Sbjct: 4   TKILLTDDHTLFRQGVRTLLAAEADMEVAGEAANAMDAVALAQQLRPDVVLMDIGMAGMS 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            F+  R +                 +F  ++              N Y        ++  
Sbjct: 64  SFEATRLIRKER--------PEVKVIFLSMYDDEDYLAECVDMGANGYILKDSPADQLIT 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +   G  +       +  L        +       +   LT RE E L  ++EGK+
Sbjct: 116 AIREVQRGGSYLSP---RLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EIA    +S  TV  +  ++MRK     ++  + YA++  I+
Sbjct: 173 VKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQYAIQKKII 216


>gi|226315402|ref|YP_002775298.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098352|dbj|BAH46794.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 596

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 24/258 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSD---LLARMIPLDCTVSWTMRMYALTEY---- 55
            E QQ  + ++ +  Q T  + ++P +++      R++ +D  V     +  +       
Sbjct: 349 LEQQQGTLSVHSQSGQGTVVIWNVPIQAEAGKGSIRLLIVDDQVMIADSLQQILSQQDNF 408

Query: 56  --VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
             VG +       +  +  + D ++       +    A+ +  + +  ++         F
Sbjct: 409 IVVGTASDGQEALEQCERHQPDIVLMDVHMQGMNGLEAILQMKERWPNMKIVVMTT---F 465

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
               +  +        Y   +     +   L L++  G  +         L+A       
Sbjct: 466 EDSVQAASALEHGAEGYMLKSTRPKEMMEALKLIYSGGTWLD-------QLIATRVFEEM 518

Query: 174 KSYDVH-----WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           K              + LT RE E L  +S+G     IA  L +S  TV NY +++  K 
Sbjct: 519 KRQREQLEKYSPNDPYGLTKREREILQLLSDGLRYKSIATKLYLSEGTVRNYCSTLYSKL 578

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R  AI  A   NI+
Sbjct: 579 GVSNREEAIELARTENIL 596


>gi|229185568|ref|ZP_04312748.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|228597963|gb|EEK55603.1| Response regulator [Bacillus cereus BGSC 6E1]
          Length = 566

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 90/264 (34%), Gaps = 27/264 (10%)

Query: 1   MNFEIQQVNIVLNRED--EQRTSFVSHLPTR----SDLLARMIPLDCTVSWTMRMYALTE 54
           M   ++QV   L+ +   EQ T  + ++P +     D++ R++ +D     T  +  + E
Sbjct: 312 MKERLEQVQGTLSVQSNVEQGTLIICNIPLQTKPVHDII-RLLVVDDQALITNSLEQILE 370

Query: 55  -----------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
                      Y G+   +L          +D  +      + +      E  + +  ++
Sbjct: 371 NQTDFIVVGKAYDGSEALILCEQLQPDIVLMDIQMPEMNGIEAL-----LEMKRRWPNMK 425

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                    F    +  T        Y   +     ++  L L++  G  I +     I 
Sbjct: 426 IVLMTT---FEDSLQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIF 482

Query: 164 LLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                Q               + LT RE+E L  +S G     IA  L +S  T+ NY +
Sbjct: 483 EEMKLQREQLAKIKSTKQTFPYGLTKREMEILEHLSNGLRYKSIAAKLFLSEGTIRNYCS 542

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K     R  AI  A   NI+
Sbjct: 543 NLYSKLGVSNREEAIKMARTENIL 566


>gi|119960873|ref|YP_948224.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119947732|gb|ABM06643.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
          Length = 237

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 69/248 (27%), Gaps = 17/248 (6%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + + L  + +   S    L      L  +      +     + A T       
Sbjct: 1   MPVVPSPIRVALVDDQQLVRSGFGMLINSQPDLEVVAEAGNGIEAVQALSATT------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-CPVFHTLPEN 119
                        +D  +      +  R +      +     +   ++     F      
Sbjct: 54  --------ADVVLMDVRMPGMDGIEATRRILEQAAAQPTGSQRAEIKIVVLTTFDLDEYA 105

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDV 178
           +       + +         +   +  +F    +I       +   +A            
Sbjct: 106 LAAIQAGASGFLLKDAPPEELLEAIRTVFRGDAVIAPSTTRRLLDHVAPLLRTQTPEQTE 165

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      LT RE E    I++G+++ EIA  L +S  TV  ++  I+ K   + R   + 
Sbjct: 166 HAAAVERLTAREREVFQLIAQGQSNPEIAAGLFLSEATVKTHVGHILAKLGARDRVQVVV 225

Query: 239 YAVRNNIV 246
            A    +V
Sbjct: 226 IAYETGVV 233


>gi|182436043|ref|YP_001823762.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464559|dbj|BAG19079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 14/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R                ++  +  +    +        G      V         +D 
Sbjct: 5   PIRAVIADDQMMVRQGFTVLLNAEPDIEVVGQA-----VNGLDAVAKVAELAPDVVLMDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  +E             L    F              + +      
Sbjct: 60  RMPELGGIEATRRITSAEGS-------AVKVLVLTTFDLDEYVYEALRAGASGFLLKDAS 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++  +    +  +  +             +  ELT RE E LT 
Sbjct: 113 ADELAHAVRVVAAGDALLSPNITKRL--IVEFSRTAGAPRPPLKARVGELTERETEVLTL 170

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EI+  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 171 IAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESGLV 220


>gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579]
 gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264]
 gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579]
 gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264]
          Length = 595

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 350 MNLQ-GQLSVYTKPDEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 408

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 409 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRILIFT 463

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 464 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 516

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 517 KFDAQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 576

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 577 GVRNKEEAVQKALEIGII 594


>gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 250

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + +++  +       +  +  + + +  +                    GA      
Sbjct: 31  AEPIRVLVVDDHALFRRGLEIVLAQEEDIQVVGEAGD---------------GAEAVDKA 75

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +    +          V      +   +     +      
Sbjct: 76  ADLLPDIVLMDVRMPRRGGIEACTSIKE--------VAPSAKIIMLTISDEEADLYDAIK 127

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      I      ++  L  +++ + ++ +       
Sbjct: 128 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKL--LTEFKSMIQRTDERRLVPAP 185

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G  + +IA  L IS NTV N++ +I+ K    +R  A+ YA+R  
Sbjct: 186 RLTDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREK 245

Query: 245 IV 246
           I+
Sbjct: 246 IL 247


>gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVYQGNANFHPKVTPALI-------GRSAVKKEIENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELYITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|229031002|ref|ZP_04187018.1| Response regulator [Bacillus cereus AH1271]
 gi|228730349|gb|EEL81313.1| Response regulator [Bacillus cereus AH1271]
          Length = 566

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 86/260 (33%), Gaps = 25/260 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTR----SDLLARMIPLDCTVSWTMRMYALTEYV-- 56
            E  Q  + +    EQ T  V ++P +     D++ R++ +D     T  +  + E+   
Sbjct: 316 LEQVQGTLSIQSNVEQGTLIVCNIPLQTIPVHDII-RLLVVDDQALITNSLEQILEHQTD 374

Query: 57  ---------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
                    G+   +L          +D  +      + +      E  + +  ++    
Sbjct: 375 FIVAGKAYDGSEALILCEKLQPDIVLMDIQMPEMNGIEAL-----LEMKRRWPNMKIVLM 429

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
                F    +  T        Y   +     ++  L L++  G  I +     I     
Sbjct: 430 TT---FEDSLQAATALEHGAEGYMLKSIHPQEMKEALKLIYNGGTWIDQSVATRIFEEMK 486

Query: 168 YQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Q               + LT RE+E L  +S G     IA  L +S  T+ NY +++  
Sbjct: 487 LQREQLAKIKSTKQTFPYGLTKREMEVLEHLSNGLRYKSIAAKLFLSEGTIRNYCSNLYS 546

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R  AI  A   NI+
Sbjct: 547 KLGVNNREEAIKMARTENIL 566


>gi|329938110|ref|ZP_08287561.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302599|gb|EGG46489.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 223

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 59/229 (25%), Gaps = 11/229 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L  ++     +             G +   +          +D  
Sbjct: 2   IRVLVVDDQYLIRAGLVGLLNAAPGIEVVGEAE-----DGDTAVRVAAETSPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +          V +         F              + +       
Sbjct: 57  MPGTDGVRATELILAQA---TDPVPRVL---VLTTFDLDEYVYGALRAGASGFLLKDSGP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+   +  +     +        +    A +A           +   LT REVE L  I
Sbjct: 111 ERLLAAVTAVRGGDALFAPSVTRRLVEAYAGRAGHRPRDAEPPPELGALTTREVEVLGLI 170

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ EIA  L IS  TV  ++   M K    +R+ A+  A    +V
Sbjct: 171 GRGLSNLEIADRLYISEATVKTHLNRTMTKLDLDSRAQAVVVAYETGLV 219


>gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + + V G      V         +D  +     
Sbjct: 6   RVLIADDQSMVRQGFTVLLNAESGIEVVGQAVDGEDAVAQVAELAPDVVLMDIRMPGLGG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F              + +         +   
Sbjct: 66  IEATRRLTE-------PDGATVKVLVLTTFDLDEYVYEALRAGASGFLLKDASAEELAHA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++  +    +    +              +  +LT RE E L  I++G ++
Sbjct: 119 VRVVAAGDALLAPNITKRLIAEFSRVTAAAPRA-PLKDRVGDLTERETEVLALIAQGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 178 AEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 220


>gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q++++L  +       ++ L +       +           R   L            
Sbjct: 1   MSQISLLLVDDHALFREGLASLLSYQPDFTVVGEAASGEEAVERARELV----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +           L     +   V+           
Sbjct: 50  ----PDVVLMDIDLPGIDGIEATRRIKRQ--------LPEVRVVMLTVYDDHERLFQSIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       A +   L  L      I R     I      +    +        D 
Sbjct: 98  AGAQGYLIKNIRSAELLDQLRGLARGEAAISRRMAARI----LEEFARLERQAEILEPDG 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REVE L  ++   ++ EIA  L IS +TV N++ +I+ K    +R  A AYAV + 
Sbjct: 154 GLSPREVEVLELVALRLSNKEIAARLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHG 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 217

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 68/229 (29%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R                ++ ++  +    +        G                +D  
Sbjct: 2   IRVLLADDQTMVRTGFEMILGVENDIEVVGQA-----ADGRQAVSAAARLHPDVVLMDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +       R +  +E             +    F              + +     D 
Sbjct: 57  MPTMDGIAATREIVAAET---------ARVIVLTTFDRDDYLFDALGAGASGFILKNSDP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++       +    A      +       +   LT REVE L  +
Sbjct: 108 TELVAAVRAVANGDALLSPSVTLRVIRAMAQGHAPREVTPGADAELARLTDREVEVLRAL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++++ K   + R  A+A+A ++ +V
Sbjct: 168 ARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDRVQAVAHAYQHGLV 216


>gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Ames]
 gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Sterne]
 gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L]
 gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
 gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Ames]
 gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Sterne]
 gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L]
 gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
          Length = 209

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKQI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +           +S          LT RE E L  I++G+++ 
Sbjct: 117 IAIYEGNANFHPKVTPALL---------GRSAVKKENPFSMLTKREQEVLQEIAKGRSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 168 EIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|89092629|ref|ZP_01165582.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89083141|gb|EAR62360.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 217

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +VL  +       +S        +  +   +           LT             
Sbjct: 5   KIRVVLVDDHPLVLDGISARLEGEPTIDVVGMANDGQQALQVAAELT------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +     F+        + +           L   +       +      
Sbjct: 52  --PDVVLMDVSMPVMNGFEAAEKFRDEQPNI--------KVLILSMHDDREYIVKLIKCG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184
              Y       + +   +  +F  G          +          N     +       
Sbjct: 102 AAGYVLKDVSSSELITAIETVFSGGSYFSSGASQALFSQFEQEQAVNEKAEQEA------ 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE + L  ++EG ++ EIA  L IS  TV  +  +I  K    T +G   YA+ NN
Sbjct: 156 -LTGREKDVLKLVAEGNSNKEIARTLDISVRTVETHRQNIKNKLDIHTAAGLTRYAIDNN 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 214

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ ++L  + +     +       D +  +           R   L              
Sbjct: 5   QIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVDRAEEL-------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + ++ +   +             L    F      +      
Sbjct: 51  -RPDVVLMDVKMPGTDGIEALKRLRALDNP--------AKVLVVTSFTEQRTVVPALRAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +   +  +     ++  +    +           +      G+   L
Sbjct: 102 AAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALL--------AQEDSHGGTGRGSTL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 154 TEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212


>gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 251

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 22/237 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVRC 89
            +        +   +          G   +                  +  ++P D +  
Sbjct: 9   FIEDANAAKSSKEVSALFGKALAVFGYDRYCYSLITDHPSLGLNAGHGLVCNYPDDWMEH 68

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRYCSLTFD 136
             L++ +K   V Q       P                         A + +        
Sbjct: 69  YRLNQYEKKDPVPQYGISASRPFTWASVVAQRKWHPDQMKVMHEAEEARLCDGIAVPVCG 128

Query: 137 VARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGR 189
           V     G  +     G    R  L ++  LA      F   +       E      LT R
Sbjct: 129 VNGELAGFGIASSHGGVSPDRTLLHKVQALAIQFHLAFTELEKIETPLTENLAEVYLTER 188

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E ++W +EGK+   IA ILG+S +TV  ++ ++ +K     R+ A   A+R+ ++
Sbjct: 189 EKEIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLATVKAIRHGLI 245


>gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 211

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +  +                    G     L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLEAQADIEVIGEASD---------------GQKGVELAVEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +           ++    +    F    +         
Sbjct: 47  RPDVILMDLVMEGMDGIEATKRICQE--------IEDARIIVLTSFIDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +         +           A    N  +           LT
Sbjct: 99  LSYLLKTSKAGEIADAIRSASIGEPRLESKV-------AGKVMNKLRHSSNGSILHDALT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++GK++  IA  L I+  TV  +I +I+ K   + R+ A  YA R+ ++
Sbjct: 152 AREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKLDVEDRTQAAVYAHRHKLI 210


>gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  + E   S  S +      +  +                    GA     V   
Sbjct: 3   VRVVVADDQELVRSGFSMILEAQPDIEVVAEAGD---------------GAEAVAAVERY 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D  R +                 +    F              
Sbjct: 48  APDVLLLDIRMPVMDGLDAARRVCARS---------ACKVVMLTTFDLDEYVYEALYAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +      +     + DV   +   LT
Sbjct: 99  SGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLEVLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 159 AREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGLV 217


>gi|25027912|ref|NP_737966.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259506306|ref|ZP_05749208.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23493195|dbj|BAC18166.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259166086|gb|EEW50640.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 221

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 60/223 (26%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L          +D  +     
Sbjct: 6   RILLVDDQELIRYGFRLVLETEPDLEVVGEAGDGTTARQLASTLRPDVILMDVRMPGIDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           L     L    +                +         +   
Sbjct: 66  IETTRQILTD--------LPTTRILVLTTYDRDEFAFGALRAGAAGFLLKNTRPVELTAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++      ++  +A  Q N          +   LT RE E    +  G T+
Sbjct: 118 IRTVHAGDAVVSPRITAKLIEVALPQLNQGVPPTEQDPELDRLTEREREVFVLVGRGYTN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  +   ++ K    +R  A+  A    +V
Sbjct: 178 PEIAQALHLSESTVKTHFGRVLMKLGLTSRVQAVIRAYELGLV 220


>gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 218

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 11/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     LV+        +D  +      
Sbjct: 4   VLLTDDQSLIRQGLRALLELETDLEIVGEAENGEIAIHLVKQLQPDVVLMDIRMPIIDGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +                 L    F                Y         + + +
Sbjct: 64  AATKTIQTH--------FPATKVLVLTTFDDDLYIKAALQNGAMGYLLKDTPSEELAVAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +  + + ++  L  +                ELT RE + L  I+ G ++ 
Sbjct: 116 RAVDKGFSQLSPEIVKKL--LTQFPTTAPDPVKSIPPSLVELTPREKQVLRLIANGASNR 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EIA  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 174 EIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAILA 209


>gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I+L  +DE     +     +   L  +   +                G     L    
Sbjct: 2   TKILLVEDDELFRLGLRMRLQQETSLEIVAEAED---------------GEQAVELANRY 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +     +    +L   +    P+   L       A   
Sbjct: 47  PLDLVLLDIGLPGIGGIEACRQIKQKHPNL--PILVLTSRSEKPLISRL------IAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             YC        + + +  +        +    EI       + +          +  LT
Sbjct: 99  QGYCLKGIPAESLILAVRSVAGGASWWDQTATTEIRAAFEGNSTVVLPAKTEGTLENPLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ GK++ EIA IL I+  TV  ++ +I++K   + R+ A   A++  +V
Sbjct: 159 KREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQKGLV 217


>gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842]
 gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842]
          Length = 595

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 350 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 408

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 409 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRVLIFT 463

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 464 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 516

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 517 KFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 576

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 577 GVRNKEEAVQKALEIGII 594


>gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 249

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 72/244 (29%), Gaps = 17/244 (6%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +VL  + +   +    +      L  +                    GA    +V
Sbjct: 11  MSPIRVVLVDDQQLVRAGFRMVLDSQPDLQVVAEASD---------------GADAVRVV 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  S           P  +    F      +    
Sbjct: 56  AATPCDVVLMDVRMPGLDGIEATRRITGSGTAGAGPDAGAPKVVVLTTFDLDEYVVAAIG 115

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGK 182
              + +         +   +  +     +I       +   +    +A          G 
Sbjct: 116 AGASGFLLKDAPPEELLAAVRTVHSGDAVIAASSTRRLLQHVGPMLRAGAASPAAAAQGV 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE+E L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+  A  
Sbjct: 176 PADLTPRELEVLECMAHGLSNGEIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVLAYA 235

Query: 243 NNIV 246
             +V
Sbjct: 236 AGLV 239


>gi|328882240|emb|CCA55479.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 12/230 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++     +             G     + R        +D  
Sbjct: 3   IRVIIVDDQAMVRAGFAALLAAQPDIDVVGEA-----PDGRQGVDVARAAHPDVVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +          V  RP  L    F              + +       
Sbjct: 58  MPELDGLAAAREL----LHPPVGVTHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTW 196
           A +   + ++     ++       +  +A + A+      D    +   LT RE E L  
Sbjct: 114 ADLISAVRVVAAGEALLAPSVTRRL--IADFAASRPAPRKDTTALRLNGLTPRETEVLEL 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EIA  L ++  TV  +I  ++ K   + R+ A+ +A  + +V
Sbjct: 172 IARGLSNQEIADHLVLAEQTVKTHIGRVLAKLDLRDRAQAVVFAYESGLV 221


>gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 220

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 65/229 (28%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +  ++     V             G     L R        +D  
Sbjct: 2   IRVLVVDDQTLIRSAVVGLLGAADDVEVVAEAG-----DGRRAVELARRHRPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  R +           L+    L    F      +       + +     + 
Sbjct: 57  MPVMDGIDATRTICA------DRGLEAVRVLVLTTFEEDAFIVGALRAGASGFLGKGSEP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +     ++         L+  Y        DV       LT REVE LT +
Sbjct: 111 GEIIAAIRAVHGGEALLSPTATR--ALIDRYV--RPSPSDVVPQALEHLTEREVEILTLV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ EIA  L IS +T   ++  +M K     R+  +  A  N +V
Sbjct: 167 GSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAYENGLV 215


>gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
 gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 24/242 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +     S +  L  R      +                    G        
Sbjct: 3   DPIRVLLVDDHALFRSGIKSLLQRHAEFEIVGEAGD---------------GMEGVKRAG 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D    MA    + +         L   V     + I     
Sbjct: 48  QLKPDVVLLDLHMPGLSGRDAAAMMAEEAPNSH--------VLMLTVSEDAEDLIETLRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDF 184
               Y     +   +   +        +I    + ++   +         +      +  
Sbjct: 100 GACGYLLKNIEADALIAAINRAAEGESVISPQMMGKLLKGVRGELPVKTAAQTAVASELN 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L +++ G+++ EIA  L ++ +TV  ++ +++RK    +R  A  +AV   
Sbjct: 160 KLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLRKLNLTSRVQAAVFAVEQG 219

Query: 245 IV 246
           IV
Sbjct: 220 IV 221


>gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum
           SL003B-26A1]
 gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum
           SL003B-26A1]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 94/239 (39%), Gaps = 16/239 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +S L    DL  ++  L+     + R+ AL    G    +L  +          I+++ W
Sbjct: 1   MSRLTEALDLAEQIGRLETAQDVSARLGALARDYGFHAHVLASFQGPGTVAEPRILAAGW 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNR 129
             +      +++      V+ R T    P   +                +      + + 
Sbjct: 61  AQEWQERYLVNQYAVDDPVVVRATLASMPFRWSDALNEPWVTPRGVRVFDEARAFRLCDG 120

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELT 187
                +    +  G + L  +   +  + L  + L+  Y  +  ++            LT
Sbjct: 121 VFIPVYGPKGLEGG-LSLGGERVDVGAEELKALHLVGLYAYDHVRALSQGDPAWSAGTLT 179

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+ECL W++ GKTS EI+ +LGISR+T + Y+A  +RK     R+ A+A A R  ++
Sbjct: 180 PRELECLKWVAAGKTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAFRRAMI 238


>gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 220

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 28/240 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     ++ L    + L  +           +   L               
Sbjct: 2   IKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  S        L     L    F              
Sbjct: 47  EPDIVLMDIRMPVSNGVEGTKLITSS--------LPGVKVLMLTTFKDSELIAEALEEGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + Y         I   +M +   G ++  +      +L  ++            K  EL 
Sbjct: 99  SGYLLKDMSADTIVKAVMTVHSGGMVLPPELTA--QMLNEWKREKQLKGINEIEKPKELL 156

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE+E L  +  G  + EIA  L I+  TV N++++I+ K A + R+ A  Y+VR  
Sbjct: 157 DLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216


>gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
 gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073]
 gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89]
 gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA]
          Length = 244

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 13/230 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             +L R   ++        +    + +   ++ L         +      +++P   V  
Sbjct: 15  RTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 74

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
                      VL         +                    G+            R  
Sbjct: 75  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRAL 134

Query: 142 IGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTW 196
             L        +  I+  +   ++ LL           +       +   + RE E L W
Sbjct: 135 GFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKW 194

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 195 TAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 244


>gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 218

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 23/234 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D++R           + L  ++  +                G     L          +D
Sbjct: 3   DKRRIVIAEDHTILREGLRMLLSSNPDFEVVGEAQD-----GLDAVRLAESLKPDLMLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +        ++ +                 L   V  +    +       + Y     
Sbjct: 58  LSMPRMNGMGAIQEIKKQCT--------ATKILVLTVHKSEEYILATLKAGADGYVLKDA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVE 192
             + + + +  +F     +          ++      +               LT RE E
Sbjct: 110 THSELMLAIECVFSGKSYLSPS-------ISEKVIEGYLEGRKTIKSSTSWDTLTQREKE 162

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+EG  + +IA  L IS  TV  + A++M+K    + S   A+A+   ++
Sbjct: 163 ILKMIAEGYKNKDIADYLCISAKTVEKHRANLMKKLDLHSASSLTAFAMEKGLI 216


>gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
 gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3]
          Length = 592

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDI 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGDQAIDLCGRLQPHVVLMDLDMQQMDGVEATKKIKQQ-----WPHIRVLIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTKQALDSLRNGADGFLLKSIETLELANTIRLIHGGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q +            +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K 
Sbjct: 514 QFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|71068204|gb|AAZ23059.1| probable putative response regulator [Streptomyces fradiae]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 12/230 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++     +             G     + R        +D  
Sbjct: 3   IRVIIVDDQAMVRAGFAALLTAQDDIDVVGEA-----PDGKRGVEVSRSVHPDVVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +     D    V+ RP  L    F              + +       
Sbjct: 58  MPEMDGLAAARAL----LDPPPGVVHRPKVLMLTTFDVDDYVYEALRAGASGFLLKDAPP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTW 196
           A +   + ++     ++       +  +A +      +       +   LT RE E L  
Sbjct: 114 ADLIAAVRVVASGDALLAPSVTRRL--IAEFAKQRPATARGNPALRLNGLTPRETEVLGL 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EIA  L ++  TV  ++  ++ K   + R+ A+ +A  + +V
Sbjct: 172 IARGLSNQEIAGRLVLAEQTVKTHVGRVLAKLTLRDRAQAVVFAYESGLV 221


>gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
 gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222]
          Length = 592

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRVLIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 70/232 (30%), Gaps = 15/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  LLA M   +        +      +G  +   V        +  S+  +++P     
Sbjct: 5   RESLLASMEQAETASDAFDGLAPAVRALGFEYHAYVLRVTIPITRPASMEWNNFPQAWRA 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIR 141
             A         VL        P+                   G+ + +     D     
Sbjct: 65  HYAQKRYQHADPVLHYGQACTRPMPWPGPLAGHDAFWRDAADFGLRHGWSQTLRDHRGAM 124

Query: 142 IGLMLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               L+   G  I  + L         +        +     DV       L+ RE E L
Sbjct: 125 GTFSLV-RGGPPISPEELRRTEPEMIWLCQFVHATMSNLIVSDVMPSGAMRLSLREKEVL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKT+ E+A IL ++   V  +I + M K     ++ A   A    ++
Sbjct: 184 HWTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAAMLGLI 235


>gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
 gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium
           vitis S4]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 14/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + + R        +       +    G   ++        +     +V + WP       
Sbjct: 8   EFMERCDNQKSVDNLFSDFGTVIAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQF 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENI-------------TPPAGMDNRYCSLTFDV 137
                     V +       P                           + +      FD 
Sbjct: 68  EGLNYFADDPVSRWSLSQSKPFTWKTAREETKATARTKEIQQEADRYRLCDGIVFPMFDP 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTW 196
              +  + L       + ++ + ++ LL++Y A    +      + D  LT RE E L W
Sbjct: 128 NSWQSVISLATDDKGGLAKENIGDLYLLSSYCAMTANNLLRRAEQADHRLTDREKEILQW 187

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S GKT  EI  IL ++  +V   +A I      K R   ++ A+R  ++
Sbjct: 188 VSRGKTDWEIGTILRMTEGSVTQRLARIRDTLGVKNRPQTVSQAIRLGLI 237


>gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 79/244 (32%), Gaps = 24/244 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                V I+L  +DE     +     +   L  +   +                G +   
Sbjct: 1   MASNPVKILLVEDDELFRLGLLVRLQQETGLEIIAEAED---------------GETALD 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            ++        LD  +      +  + +          +L   +    P+          
Sbjct: 46  FIKQQPVDVVLLDVGLPGLGGIETCKQIKQQNPQL--PILILTSHSQKPLI------SKL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  YC       ++ + L  +             EI   +   +    S +     
Sbjct: 98  IEAGAQGYCLKGIVAEKLVLALRSVAAGASWWDETATREIRS-SIAASQSQPSTENLIKS 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LTGRE+E L+ +++GKT+ EIA  L I+  TV  ++ +I+ K     R  A+  A++
Sbjct: 157 DHPLTGRELEILSLLAQGKTNQEIATALYITPGTVRVHVHAILHKLDVSDRHQAVVLALQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 KRLI 220


>gi|239978487|ref|ZP_04701011.1| two component system response regulator [Streptomyces albus J1074]
 gi|291450385|ref|ZP_06589775.1| two component system response regulator [Streptomyces albus J1074]
 gi|291353334|gb|EFE80236.1| two component system response regulator [Streptomyces albus J1074]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +    + +  +              AL               
Sbjct: 2   ITVLLADDQRLVRAGFRSILEDEEGIEVVGEAADGEEAVAAARAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L+    +    F              
Sbjct: 47  RPDVVLMDIRMPGTDGLEAARRITA------DPRLETVRVVILTTFDLDEYVYRALREGV 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     +   +   + +      +I       +      +     +      +   LT
Sbjct: 101 TGFLVKDTEPEELAHAIRVAARGDALISPSVTRRL----IAEFAGRVAPPPPDPRLNALT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G T+D IA  L +S  T   +++ +M K   + RS  +  A  + +V
Sbjct: 157 DREREVLRLVAGGLTNDRIAATLVVSPATAKTHVSRVMTKLGVRDRSQLVVLAYESGLV 215


>gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 213

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 31/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + ++L  + +     +       D +A +                    GA      
Sbjct: 2   ADAIKVLLVDDHQVVRRGLRTFLEVQDDIAVVGEAAD---------------GAEGVARA 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      D +R +                 L    F      +    
Sbjct: 47  EELKPDVVLMDVKMPGMDGIDALRKLRELNNP--------ARVLIVTSFTEQRTMVPALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   +   +  +     ++  +    +           +  +   G+  
Sbjct: 99  AGAAGYVYKDIDPDALAGAIRSVHAGHILLQPEVAGVLL--------SQEENNSGQGRGG 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 151 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210

Query: 245 I 245
           +
Sbjct: 211 L 211


>gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75]
 gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75]
          Length = 228

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 13/228 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L R   ++        +    + +   ++ L         +      +++P   V    
Sbjct: 1   MLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQ 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIG 143
                    VL         +                    G+            R    
Sbjct: 61  AKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGF 120

Query: 144 LMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWIS 198
           L        +  I+  +   ++ LL           +       +   + RE E L W +
Sbjct: 121 LSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTA 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 181 EGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 228


>gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 321

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 14/224 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRCMALSEK 95
             +         M  L    G +HF++ R  L  EQ+  + +V S+WP +LV+     E 
Sbjct: 98  ASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGET 157

Query: 96  DKYYNVLQRPTELFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIGLML-------- 146
            +   +++R  +   PV                  +  L          ++L        
Sbjct: 158 FQTSELVERLRQTKLPVTGGPELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPF 217

Query: 147 ---LFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKT 202
              L              + L          +++D   G   +L+ REVECL W + GK+
Sbjct: 218 VAVLSGTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLRWAAAGKS 277

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SDEIA+ILGIS  TV++Y  S  RK     R  AIA A+R  ++
Sbjct: 278 SDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 321


>gi|297571014|ref|YP_003696788.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931361|gb|ADH92169.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 230

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 72/243 (29%), Gaps = 21/243 (8%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +++ + L  + +   S +S +    D +  ++     +    R+             
Sbjct: 1   MTQEKIRVGLVDDMDLMRSGLSMMINSLDDMEVVLEARDGLQAINRLQ------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +         R +  +           P  L    F      +  
Sbjct: 49  ---LVPVDVILMDVRMEGMDGLAATRAITST----TPPTGVDPKILILTTFDEDDYMLEG 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +       A++   +  ++    +I       +  +     +  + +      
Sbjct: 102 IRAGASGFLLKDAPTAKMLEAIRTIYQGDAVIAPSTTRRL--VDRLATDSIRLHASKPEV 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E    I+ G T+ EIA  L ++  TV  ++  I  K   + R  A+  A  
Sbjct: 160 LDDLTDREREVFYLIARGLTNTEIADRLYVAEATVKTHVTRIFAKLGVRDRVQAVVIAYE 219

Query: 243 NNI 245
             I
Sbjct: 220 AGI 222


>gi|85858979|ref|YP_461181.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85722070|gb|ABC77013.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 217

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           VN++L  + +     +  L      +  +   +                G     L R  
Sbjct: 3   VNVLLADDHKIVRDGLRTLLETHGSMNVVAEAEN---------------GQKTITLAREL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      D  R +           L     +   +       I       
Sbjct: 48  HPEIIIMDISMPDMNGIDATRKITSD--------LPGIKVIALSMHADRHFVIGMLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +      +         ++  Y     K+         ELT
Sbjct: 100 SGYLLKDCAFEELVNAIQTVLSNHTYLSPTIAD--IVVKNYVH---KAAGTSVVVSSELT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  ++EG ++ +IA  L +S  TV  +  +I +K    + +  I YA+R  +
Sbjct: 155 PRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKYAIREGL 212


>gi|320011249|gb|ADW06099.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 230

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 8/221 (3%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL--- 86
            +   R++ +D    W   +       G              ++  + V      DL   
Sbjct: 10  EERAIRVMVVDDHPMWRDAVARDLTESGFDVVATAGDGPGAVRRAHAAVPDVLVLDLNLP 69

Query: 87  --VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                    E       L+              + +         Y   +     +   +
Sbjct: 70  GMPGVQVCKELVGSQPGLRVL---VLSASGEHADVLEAVKSGATGYLLKSASTQELTDAV 126

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +        +       A+          K  +LT RE E L  +++G +  
Sbjct: 127 RATAAGDPVFTPGLAGLVLGEYRRLASDPAPAAPDQPKVPQLTDRETEVLRLVAKGLSYK 186

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 187 QIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 227


>gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 251

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 27/242 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-----SIVSSDWPFDL 86
           LL  +       +       + +  G  ++ L+R       +       + ++  WP   
Sbjct: 9   LLIVLEESPNARALVTEFERVIDDCGFEYYGLLRHLPQNPAQRHPEPRAAALADRWPEQW 68

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------------TPPAGMDNRY 130
            +  +  +      +++       P                             G+++ Y
Sbjct: 69  PQIYSAKKYVMIDPMVRYLAHAQRPFRWRESLAAFGKDAQRRRMEQMMVDAFGHGLEDGY 128

Query: 131 CSLTFDVARIRIGLMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                    I   L L        P    +      +         +  ++ +     D 
Sbjct: 129 IFPVHGRNGILGSLSLAGKPVELSPVEIALFEAVARKSFWRMLELKDEAQALETVLPADT 188

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L +++EG TS EI  +L IS +TV+ Y+  +  K   K R  A+A A R+ 
Sbjct: 189 PLTRREMEILHYLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHR 248

Query: 245 IV 246
           ++
Sbjct: 249 LI 250


>gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
 gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
          Length = 213

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTRGEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------MGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 68/224 (30%), Gaps = 8/224 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L          +D  +     
Sbjct: 6   RVLVCDDQELVRAGFATILDAQPDLEVVGEAGDGRAAVDLALRLRPDVVVMDVRMPVMDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V +  T L    F                +       A +   
Sbjct: 66  VEATRLIAGPG------VAEPLTVLVVTTFDLDQHVYDALRAGAAGFLLKDARPAELVAA 119

Query: 144 LMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +    +++       + G  A     +         +   LT REVE L  I+ G +
Sbjct: 120 VRTVAGGEQLLAPAVTRRLVGRFAERIREVAPGRGGAGAELAGLTPREVEVLGLIARGLS 179

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  Y++ I+ K   + R  A+  A R  +V
Sbjct: 180 NAEIAAELVISHETVKTYVSRILAKLGLRDRVQAVVLAYRTGLV 223


>gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
 gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM
           B1551]
          Length = 208

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 74/239 (30%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     V    +    +  +                    G     L    
Sbjct: 2   INVLLVDDHEMVRIGVGAYLSAQADIHVIAEATN---------------GQQAVELGLQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDIILMDLVMEEMDGIEATKQLIKQW--------PEAKVIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   +    ++  +   ++                      ELT
Sbjct: 99  TSYLLKTSKAGEIAAAIRRTYEGQSVLEPEVTGKM----------MSKMRKPSLPHEELT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++GKT+ EIA  L I+  TV  ++++++ K   + R+ A+ YA ++ +V
Sbjct: 149 AREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKLV 207


>gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 224

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D+      +   +     +  + E   GA               +D  +     
Sbjct: 3   RVVVADDMALVRGGMKMILEADPGVRVVGEAADGADAVEQAIRTGPDVAVMDIRMPHVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           +     L    FH             + +         +   
Sbjct: 63  IEATRRLQQR--------MPDVRVLVVTTFHLDEYVHEALRAGASGFLLKDTAPDSLVDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++      ++     +            G+  ELT RE++    ++ G T+
Sbjct: 115 VRTVAAGDALLSPAVTRQLI---EHYVQRPTPDAGLTGRLAELTPRELDVARLVARGMTN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  ++ SI+ K A + R+  +  A  + +V
Sbjct: 172 AEIAAELFLGEGTVKTHVTSILSKLALRNRTQIVVAAYESGLV 214


>gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 217

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   ++    +  + E   G   + + +        +D  + +   
Sbjct: 8   RLLVADDHALLRDGLKKILALHHDLEVVAEAPDGQEAYNMTKTIRPDIVLMDINMPNMNG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D  R +                 +   +               + Y     +   +   
Sbjct: 68  IDATRRIKSE--------FPEIGVIALTIHDDEEYIYELVKCGVSAYMLKDIETDCLVDA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +F    +           ++      F+   +    D  L+ RE + LT I+ GK++
Sbjct: 120 IRAVFRGETVYHPR-------ISEKMCGEFQRLALRNVHDEPLSRRETDVLTLIARGKSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L IS  TV N+I +I RK     R+ A  YAV+N IV
Sbjct: 173 KEIGDELYISEKTVKNHITNIFRKIQVTDRTQAALYAVKNRIV 215


>gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli]
          Length = 241

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 72/232 (31%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRY---CSLTFDV 137
                       VL         +                    G+        +     
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVHSVFNAAQTG 129

Query: 138 ARIRIGLMLLFPKGRIILRDRLW-EIGLLAAYQANMFKSYDV--HWGKDFELTGREVECL 194
           A   +       +   IL D L  ++ LL           +       +   + RE E L
Sbjct: 130 ALGFLSFSRCSRREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 RWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 241


>gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 75/246 (30%), Gaps = 27/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MNF    + I+L  +DE     +S    +   L  +                    G + 
Sbjct: 1   MNF----LRILLVEDDELFRLGLSVRLQKETGLQVVAEATD---------------GETA 41

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV   L     LD  +      +  R +          VL   +     +        
Sbjct: 42  VDLVNQHLPDVVLLDVGLPGIGGVEACRRIKQQHPQI--PVLALTSHSQKTLI------E 93

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + YC    +   + + L  +              +                  
Sbjct: 94  RLIVAGASGYCQKGIEAELLILALRSVAAGASWWDSTGTSSLREALTNVPFNSSVELSEI 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  I+ G T+ EIA  L I+  TV  ++ +I++K   + R+ A   A
Sbjct: 154 DLPQPLTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAVLA 213

Query: 241 VRNNIV 246
           ++  +V
Sbjct: 214 IQKGLV 219


>gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046]
 gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227]
 gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           E24377A]
 gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC
           3083-94]
 gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei
           Ss046]
 gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii
           Sb227]
 gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A]
 gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94]
 gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019]
 gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1]
 gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1]
 gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7]
 gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407]
 gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae
           CDC 74-1112]
 gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G]
 gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68]
 gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli
           E1520]
 gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli
           TA007]
 gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88]
          Length = 240

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|325289912|ref|YP_004266093.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965313|gb|ADY56092.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 212

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                  P   + L R++  +  +     +       G     + R   F    +D  + 
Sbjct: 4   VVIADDHPLLREGLRRILEFEPGIQVVTEVGD-----GQGAINIARSLTFDILLMDLNMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +     +           +   V  +  +           Y         
Sbjct: 59  GMNGLEACRVIRRERPEIG--------IIVLTVDDSDEKVFQVLQTGVAGYLLKDVFPKT 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  ++    I+      ++            S        F L+ RE+E L  ++ 
Sbjct: 111 LVNSIRKVYSGEPILAPSVTGKLL--------GQISTPSKNKNSFGLSKREMEILRAVAR 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EI + L IS  TV N++++I RK   + R+ A   AV+ N+V
Sbjct: 163 GSSNKEIGISLYISEKTVKNHLSNIFRKLEVEDRTQAAIKAVKLNLV 209


>gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 217

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +  + +   G                +D  +    P
Sbjct: 3   RILVVDDHVVVRSGLMALLDGKNGIKVVGDAADGDEAIRKAVELQPDVVLMDFSM----P 58

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                  A +E  K     +        +               + Y   +     +   
Sbjct: 59  PGKDGLTATTELKKQLPDTEVL---ILTMHDDEEYLFRAIQAGASGYILKSAPHEELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    +  ++ Y        +   G    L+ RE E L+W+++G  +
Sbjct: 116 IQSVAEGSAYLYPNATKRL--MSEYL--DKIKQEGIAGPYESLSEREKEILSWVAKGYAN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV ++ +++M K   KTR   + +A++  ++
Sbjct: 172 KEIAEHLVISVKTVESHKSNLMEKLNLKTRPELVKFALKKGLL 214


>gi|261407693|ref|YP_003243934.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261284156|gb|ACX66127.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 12/226 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   ++    +  + E   G       +  L     +D  +     
Sbjct: 3   RLLIADDHAMVRRGLQVFLATQPDIEMVGEAANGEETLEQAKLLLPDVVLMDLNMPVLNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +           L     +    F      +         Y     +   +  G
Sbjct: 63  IDTTARLKKE--------LPHIKVIVLTSFVDYDHVLPAIRAGARGYLLKDIEPEELVAG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEG 200
           +  +F     +  D    +       A   ++      +  +L   T RE E L  I+ G
Sbjct: 115 IRRVFQGQVELHPDAAGLLMTHVTSPAGEDEANGSSHQEAAQLDKLTRREQEVLQLIASG 174

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EI+  L I+  TV  +++ ++ K     R+ A  YA+++ IV
Sbjct: 175 MNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220


>gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 210

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRLGVSAYLSAQPDMEVIGEAED---------------GQKGVELALTL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         + +  +              +    F    +         
Sbjct: 47  RPDVILMDLVMEPIDGIAATQEIMSAW--------PEAKIIVVTSFLDDEKVFAALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   F    ++  +   ++      Q               +LT
Sbjct: 99  TSYLLKTSKASEIADAIRATFHGQSVLEPEVAGKVMQNRRRQRARL--------PHEQLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++GKT+ E+A  L IS  TV  ++++I+ K   + R+ A+ YA R+ +V
Sbjct: 151 SREMEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209


>gi|261210994|ref|ZP_05925284.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341]
 gi|260839969|gb|EEX66569.1| DNA-binding response regulator LuxR family [Vibrio sp. RC341]
          Length = 212

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 2   DKPIRVVMVDDHQVVLDGFIARLEQEPEIDVV-----ATASNGLEALELVKLHQPDVVLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D  R +           +     L   +       +         Y    
Sbjct: 57  DVSMPIMNGIDATRLIKEE--------VPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 109 ISALKMVQAIKTVHQGATYFCESTTSTL---------FSQEILPMANKPNPLSRREEAIL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 160 RLVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 211


>gi|229521390|ref|ZP_04410809.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM
           11079-80]
 gi|229341488|gb|EEO06491.1| DNA-binding response regulator LuxR family [Vibrio cholerae TM
           11079-80]
          Length = 216

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 64/240 (26%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  + +           +   +  +                    G     LV+ 
Sbjct: 8   PIRVVMVDDHQVVLDGFIAHLEQEPEIEVVATASN---------------GLEALELVKL 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +           +     L   +       +      
Sbjct: 53  HQPDVVLMDVSMPIMNGIEATRLIKEE--------VPHTKVLMLTMHDNREYIMQVMQAG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        ++   +  +              +           +       K   L
Sbjct: 105 AMGYMLKEISALKMVQAIKTVHQGATYFCESTTSTL---------FSQEILPVANKPNPL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 156 SRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 215


>gi|224283310|ref|ZP_03646632.1| two component transcriptional regulator, LuxR family protein
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 240

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 74/256 (28%), Gaps = 35/256 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+  + E   +  + +      +  +                    GA    L      
Sbjct: 1   MVIADDQELVRAGFAMVIGSQPDIQVVGQAGD---------------GAQAVSLAESLHP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      +    ++  E        ++   +    F      +       + 
Sbjct: 46  DVVLMDVRMPGMDGLEATSRISALEAAAGDA-PRKTRVIILTTFDLDEYVMAAINAGASG 104

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFE- 185
           +     +   +   +  ++    II       +    +   Y  +   + D +       
Sbjct: 105 FLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYADGSSTM 164

Query: 186 ---------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          LT RE E L  I+ G ++ EIA  L IS  T   ++A I+ K   
Sbjct: 165 PGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINA 224

Query: 231 KTRSGAIAYAVRNNIV 246
           + R  A+ +A  N +V
Sbjct: 225 RDRVQAVVFAYDNGLV 240


>gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 239

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 69/230 (30%), Gaps = 16/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P     L+ ++  D +              GA    L R        +D 
Sbjct: 10  RIRVLIVDDQPLVRRGLSLILSPDPSFEVVGEAEN-----GAQAVTLARRLRPDVVVMDI 64

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +A +        +     L    F      +         +      
Sbjct: 65  RMPVLDGVGATRELAAT--------VPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSS 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      +    L  +        +  +      G   ELT REVE    
Sbjct: 117 PEDLSAAIRTVHAGEAAVAPRLLTRLISTYVRAPHGTRPTPTGLG---ELTPREVEVWRL 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G  +  I+  L IS +TV NYI SI  K A + R+ A+  A  + +V
Sbjct: 174 MATGLDNTGISRTLDISLSTVKNYITSIFDKLAVRDRAQAVIVAYESGLV 223


>gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 14/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R              A ++     +    +        G     L R +      +D 
Sbjct: 5   PVRVLLADDQTLVRAAFAMLVESATDMEVVGQAGT-----GREAVRLARSERADVVVMDL 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D  R +A        + L     L    + T    +       + +      
Sbjct: 60  RMPDLDGIDATRLIAA------DDDLAGVRVLVLTTYDTDEYIVEALRAGASGFLVKDTK 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   +  +     ++       +  +A              G +  L+GRE E LT 
Sbjct: 114 PAELLDAIRTVAAGEALLSPGPTARL--IARLLRTPVPPPAAAVGPEC-LSGREREVLTL 170

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G  + EIA  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 171 VARGLNNTEIAESLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 220


>gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 213

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKERPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------MGRSAVKKEVENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|300788334|ref|YP_003768625.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797848|gb|ADJ48223.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 11/226 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   + +     +  T     + E   GA               +D  +   
Sbjct: 1   MTTILIADDQPLQRLGFRMLLDATPDTEVVGEAAHGAEAVRRTAELRPDVVLMDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGIEATRRILATGG--------RSRVLVMTTFDLDEYAYAALRAGASGFLLKDAHPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFE-LTGREVECLTWISE 199
            G+  +     +I       +     +   +   +        +E LT RE + L  I +
Sbjct: 113 AGIRAVAGGDAVIAPALTRRLLDTYGHRLPDGGATPTPPADPRWESLTAREQDILVAIGQ 172

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+ EIA  L +S +TV  ++  ++ K   + R  A+  A    +
Sbjct: 173 GWTNGEIAERLVLSESTVKTHVGRVLAKIGARDRIQAVILAYDLGL 218


>gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 231

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 16/233 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           +  + ++     +             G      V         +D 
Sbjct: 8   PIRVLIADDQVMVREGFSVLLNAQPDIEVVGEA-----VDGRQAIAQVAALRPDVVLMDI 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  ++             L    F              + +      
Sbjct: 63  RMPELNGLEATREIVAAD--------ADAKVLVLTTFDLDEYVYQALRSGASGFLLKDAS 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVEC 193
             ++   + ++     ++       +    +                G+  ELT RE E 
Sbjct: 115 ARQLGEAVRVVAAGEALLAPTVTKRLITTFSRIGEAAGLGGPLPSPQGRLAELTERENEV 174

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++G ++ EIA  L ++ +TV  +++ I+ K   + R+ A  +A    +V
Sbjct: 175 LVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLRDRTQAAVFAYEARLV 227


>gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC
           14672]
          Length = 213

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA    L +        +D  +      
Sbjct: 7   VLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAQGVALAQELQPDVILMDVKMPGMDGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +   +             L    F      +         Y     D   +   +
Sbjct: 67  DALRRLRELDHP--------ARVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++  +    +           +      G+   LT RE E L  I++G+++ 
Sbjct: 119 RSVHAGHVLLQAEVAGALL--------SQEESAPGQGRAGSLTEREREVLGLIADGRSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211


>gi|291004781|ref|ZP_06562754.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 212

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 21/223 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D     +     +     +  + E   G     L R        +D  +      +  
Sbjct: 1   MDDQELMRMGFRMVLESQDDLEVVGEAGNGEEAVELARSLRPDVVLMDVRMPVVDGVEAT 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +                 L    F      +    G    +         +   +  +
Sbjct: 61  RRIVAEG---------SSKVLVMTTFDLDEYALAALRGGAGGFLLKDTPPDGLVTAVRSV 111

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----LTGREVECLTWISEGKTS 203
                ++       +        + F   D    +D      LT RE E L  +++G ++
Sbjct: 112 ASGDAVVSPSVTRRL-------LDRFLGGDGGALRDPGVLDVLTEREREVLVLVAKGLSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  L +S  T+  ++  I+ K   + R  A+  A    +V
Sbjct: 165 AELASRLFLSEATIKTHVGRILSKLDIRDRVQAVVLAYETGLV 207


>gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 222

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +    D +  +                    G       R  
Sbjct: 2   IKVLLADDQRLVRAGFRSILEDEDDITVVAEAGD---------------GDEAVAACRET 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +           L+    +    F              
Sbjct: 47  RPDVALLDIRMPGTDGLQAAGRITA------DPRLESVKVVILTTFDLDDYIYGALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     +   +   + +      +I       +      +            +   LT
Sbjct: 101 TGFLVKDTEPEELIHAVRVAHRGDALISPSVTRRL----IAEFAGRVQAPEPGPRLRALT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  ++ G T+DEIA  L +S  T   +++ IM K   + RS  +  A  + +V
Sbjct: 157 DREREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYESGMV 215


>gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri]
 gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri]
 gi|225902|prf||1403259A luxR gene
          Length = 250

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 17/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 16  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 75

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 76  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 135

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 136 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 195

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EGK+S +I+ ILG S+ TV  ++ +   K  T  R  +I+ A+   
Sbjct: 196 EGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTG 241


>gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     ++ L    D L  +           +   L               
Sbjct: 2   IKIIITDDQDIVREGLASLLQLRDELDVIATARNGQEAFEKAKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  S        L     L    F              
Sbjct: 47  EPDIVLMDIRMPVSNGVEGTKLITSS--------LPGVKVLMLTTFKDSELIAEALEEGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFEL 186
           + Y         I   +M +   G ++  +   + +  L   +            +  +L
Sbjct: 99  SGYLLKDMSADTIVKAVMTVQSGGMVLPPELTAQMLNDLKREKQLKGIHEKEKPKELLDL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE+E L  +  G  + EIA  L I+  TV N++++I+ K + + R+ A  Y+VR  
Sbjct: 159 TEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSVRDRTQAAIYSVRYG 216


>gi|153212273|ref|ZP_01948061.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124116651|gb|EAY35471.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
          Length = 216

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 6   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 61  DVSMPIMNGIEATRLIKEE--------VPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 113 ISALKMVQAIKTVHQGATYFCESTTSTL---------FSQEILPVTNKPNPLSRREEAIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 164 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 215


>gi|297561045|ref|YP_003680019.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845493|gb|ADH67513.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 247

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 65/226 (28%), Gaps = 10/226 (4%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V+ +    D           V  T  + A+ E   GA    L R +      +D  +  
Sbjct: 15  GVTRVLVADDQAMVRGSFRVLVDHTPGLSAVGEAADGAEAVELARRERPDVVLMDIRMPG 74

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                  R +                 L    F                +       +R+
Sbjct: 75  LDGIGATRRICA------DPATAGVRVLILTTFDLDEYVYAALRAGAAGFLLKDTPPSRV 128

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + ++     ++       +    A      +           +T REVE L  I+ G
Sbjct: 129 LDAITVVAAGDALLAPSVTRRLISEFARLPEPGRPPARALD---GVTDREVEVLGLIARG 185

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ E+A  L +S  TV  +I  +  K   + R+  +  A    +V
Sbjct: 186 LSNTELAEHLHLSLATVKTHIGRLRAKLGARDRAQLVITAYETGLV 231


>gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
          Length = 214

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E   +    +  +   +  +                    GA  + +V  +
Sbjct: 2   IRVMLADDHEVVRAGFRMILEQDPDVRVVAEAAD---------------GAQAYAIVARE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +   EK            +   +F           G  
Sbjct: 47  KPDILLMDISMP-----PGQSGLVACEKIAKD--FPGTKVVILTMFAEPEYLFYTLRGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y         +   +  +   G  I       +            +      + ++ L
Sbjct: 100 AGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLT-------KQLVAGGEEEDRSYQQL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KTR+  + YA+R+ ++
Sbjct: 153 SNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHKLL 212


>gi|256390165|ref|YP_003111729.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356391|gb|ACU69888.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 221

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 12/221 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +     +  + E   GA+   L R        LD  +      +  
Sbjct: 4   ADDQELVRSGFAMILDAQPDIEVVGEAGDGAAAVALTRSLSPDVVLLDVRMPVMDGIEAA 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +                 L    F              + +         +   + ++
Sbjct: 64  RQITAEG---------GSRILMLTTFDVDEYVYDALYAGASGFLLKDVRRDDLVHAVRVV 114

Query: 148 FPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                ++       +   + +   A           +   LT RE E L  ++ G ++ E
Sbjct: 115 AAGDSLLAPSVTRRLIADVTSRRPARAGDPGAAPSARLDALTPRERETLLLMARGASNAE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S +TV  ++++I+ K   + R  A+ +A  + +V
Sbjct: 175 IAARLFVSEHTVKTHVSNILMKLGLRDRVHAVIFAYDSGLV 215


>gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6
           str. E2348/69]
          Length = 240

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 13/230 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             +L R   ++        +    + +   ++ L         +      +++P   V  
Sbjct: 11  RTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
                      VL         +                    G+            R  
Sbjct: 71  YQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRAL 130

Query: 142 IGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTW 196
             L        +  I+  +   ++ LL           +       +   + RE E L W
Sbjct: 131 GFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTSEMNFSKREKEILKW 190

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 191 TAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
 gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1]
          Length = 214

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 75/240 (31%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E        +  +   +  +                    GA  + +V  +
Sbjct: 2   IRVMLADDHEVVRVGFRMILEQDPDVRVVAEAAD---------------GAQAYAIVARE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +   EK            +   +F           G  
Sbjct: 47  KPDILLMDISMP-----PGQSGLVACEKIAKD--FPGTKVVILTMFAEPEYLFYTLRGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y         +   +  +   G  I       +            +      + ++ L
Sbjct: 100 AGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLT-------KQLVAGGEEEDRSYQQL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  +++G T+ EI+  + +S  TV  + + I +K   KTR+  + YA+R+ ++
Sbjct: 153 SNRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHKLL 212


>gi|229821303|ref|YP_002882829.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567216|gb|ACQ81067.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 231

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 11/233 (4%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
                R + V          A +I  D      + + A     GA    L+         
Sbjct: 6   DAPPIRVAIVDDQQLVRAGFALVI--DSQPDMEVVLEA---GDGAQAARLLASHDVDVVL 60

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  + +       + +  S           P  +    F      +       + +   
Sbjct: 61  IDVRMPTLDGLAATQRILASPP----PGGTAPKIVILTTFDLDEYVLAAIKAGASGFLLK 116

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +  +     +I       +  +    A +             LT RE E 
Sbjct: 117 DTPPEEMLAAIRTVHAGDAVIAPSSTKRL--IEHLAAVLPDEQKTPTTALDALTEREREV 174

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+ G+T+ EI   L ++  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 175 LVLIARGRTNTEIGADLFVAEATVKTHVGRILAKLGARDRVQAVVIAYETGLV 227


>gi|290963157|ref|YP_003494339.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652683|emb|CBG75816.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 231

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 11/230 (4%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V          A ++     +             G     + R        +D 
Sbjct: 6   AIRVVVVDDQDMVRSGFAALLSAQSDIDVVGEA-----PNGRVGVEVSRRTHPDVVLMDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +     D    V+ RP  L    F              + +      
Sbjct: 61  RMPEMDGLEATRRL----LDPPRGVVHRPRVLMLTTFDIDDYVYEALHAGASGFLLKDAP 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           VA +   + ++     ++       +  +                +   LT RE E L+ 
Sbjct: 117 VAELVQAVRVIAAGDALLAPSVTRRL--IEDMARRRPAPPGAARLRLNGLTPREAEVLSL 174

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G+++ EIA  L ++  TV  ++  ++ K   + R+  + +A  + +V
Sbjct: 175 VAQGQSNTEIAARLVVAEQTVKTHMTRLLAKLGARDRAQLVVFAYESGLV 224


>gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579]
 gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 213

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +       +       +    +   +        M                 
Sbjct: 2   KIKLLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFMQK--------------- 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +      +  +        +Y   ++         F      I      
Sbjct: 47  ERPDVVLMDVSMPKMDGIEATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y        ++   ++ +              +                       L
Sbjct: 99  ADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPAL-------MGRSAVKKEVENPFSML 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 152 TKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 592

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  V       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPDEGMLVTCTVPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAENGNQAIDLCGRLQPHVILMDLDMQQMDGVEATKKIKQQ-----WPHIRILIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTKQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 228

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 24/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + I+L  +       ++ L  R   +  +   +  ++   +  AL             
Sbjct: 3   EPIRILLVDDQPLFRGAIAALLARQPDMEVVGEAENGLAGVEQARAL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + VR +     D           +   V       +     
Sbjct: 50  --RPDLVILDVEMPVMNGVEAVRLIREQVMD--------VKVIMLTVSDVEDHVLEALRN 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y        ++   +  +      I       + L    QA   +        +  
Sbjct: 100 GAHGYLLKDLRPEQLYDMVRSVMRNETPISPGVAGRL-LREIRQAGKPRVTSPAATTEQS 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE+E L  ++EG ++ EIA  L I+  TV N++ + + K     R  A AY +R  +
Sbjct: 159 VTRRELEILRLVAEGLSNKEIAKRLVITEGTVKNHVHNALEKLHMDNRIQAAAYVIRQGL 218


>gi|219667288|ref|YP_002457723.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537548|gb|ACL19287.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 215

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ ++L  +     S +  +      +  +   D   +   ++  +              
Sbjct: 4   QIRLLLVDDHSVLRSGLKMILNSQKDMVVIGEADSGAAAIAKIKEI-------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  ++          +     L   +              
Sbjct: 50  -NPDIILLDISMPDMSGLQALEKLSK---------VSSAKILMLTMHADEKYLQEALKSG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +  +      +       +        +M+     +      L
Sbjct: 100 ASGYVLKQAADTELLQAIRDVAGGEIYLDSSLAQNL------VKSMYSPRKDNNRSASNL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L +I+ G T+ EI   L +S  TV  + A IM K     RS  + YA+    +
Sbjct: 154 TEREKEVLRYIALGYTNKEIGESLSVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213


>gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
 gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4]
 gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17]
          Length = 216

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G     +      +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMLLNLRSELEVVG-----TANDGDEVVRIAEQLQPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F+             + Y     +   I
Sbjct: 56  INGVEGTRLIRER--------FPDMKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D   +I         +  S      +  +LT RE++ L  I  G
Sbjct: 108 VQAILTVHAGGAVLPQDITAQIVKELKRTKVVEISEQNQPKQVEQLTEREIDVLREIGLG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 168 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 212


>gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 221

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 79/245 (32%), Gaps = 30/245 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E +++ ++L  + E     ++ +    + +  +                    G   
Sbjct: 5   MEMEDKEIKVLLVDDHEMVRIGLAAVLGTEEGIEVVGEASS---------------GEEG 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L +        +D ++      +  R +     D           +    +    +  
Sbjct: 50  IRLAQEYRPDVVLMDLVMEGMDGIEATRQLLALHPD--------CKVIVLTSYLDDEKMY 101

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   T     I   +        ++           A+   N F+   V  
Sbjct: 102 PVIEAGAFSYLLKTSRAFEIAEAIRAAARGQSVLESQV-------ASKMMNRFRQPKVEA 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE++ L  +++GK++ +IA  L I   TV  ++ +I+ K   + R+ A  YA
Sbjct: 155 PAHEELTEREMDVLRLLAQGKSNQDIADELIIGIKTVKFHVTNILAKLGVEDRTQAAIYA 214

Query: 241 VRNNI 245
            +N +
Sbjct: 215 YKNGL 219


>gi|297155663|gb|ADI05375.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 221

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 60/229 (26%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A ++     +             G       R        LD  
Sbjct: 3   IRVVVADDQELVRAGFAMILAAQPGIEVVAE-----SGDGFEAVGAARAHRPDVVLLDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 +    F              + +       
Sbjct: 58  MPGMDGIEAARIICAET---------ACRVIMLTTFGQDGYLFDALRAGASGFLLKDVRR 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++     ++       +    A   +          +   LT RE E L  +
Sbjct: 109 DDLVHAVRMVAAGDSLLAPSVTRTLI---AAFTSGAVVPPPRTERLDVLTARERETLRLL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ EIA  L +S +TV  ++++I+ K   + R  A+  A    +V
Sbjct: 166 GCGLSNAEIAAALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGMV 214


>gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   GA    L R        +D  +     
Sbjct: 4   RVLLADDQALLRATFRILIDSCDDMEVVAEATDGAEAADLARVHRPDVILMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F              + +         +  G
Sbjct: 64  LAATSVICA------DPELSDTRVLILTTFEIDEYVAQALRSGASGFLGKDVTADALLAG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +         +             LTGRE E + W++EG ++
Sbjct: 118 IRTVAAGDSLLSPGATRTLITRFLAAPGLGTRLAAADD-LTGLTGREREVMAWVAEGHSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA  L +S  TV  ++   M K   + R+  +  A ++ +V
Sbjct: 177 EKIAEKLFVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGLV 219


>gi|291299547|ref|YP_003510825.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568767|gb|ADD41732.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 11/219 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D           +     +  + E   G     L +        +D  +      + 
Sbjct: 6   LADDQTLVRAGFKSILDDEEDIEVVGEAPDGQQALELAQRLKPDVVLMDIRMPVLDGLEA 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +A        + L     +    F       +        +     + A +   + +
Sbjct: 66  TRRIAA------DDRLAAVRVIILTTFDLDDYVYSALRAGAGGFLVKDTEPAELIHAVRV 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +I       +  LA +             +   LT RE E L  I+ G ++DEI
Sbjct: 120 VARGDALIAPTITRRL--LADFATQH--RAPQPNPRLNALTERETEVLGLIAAGLSNDEI 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  T   +++ IM K   + R+  +  A  + I
Sbjct: 176 AAKLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESGI 214


>gi|153829582|ref|ZP_01982249.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|148874916|gb|EDL73051.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
          Length = 216

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 6   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASHGLEALELVKLHQPDVVLM 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 61  DVSMPIMNGIEATRLIKEE--------VPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 113 ISALKMVQAIKTVHQGATYFCESTTSTL---------FSQEILPVANKPNPLSRREEAIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 164 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 215


>gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
 gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1]
          Length = 240

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 70/230 (30%), Gaps = 13/230 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             +L R   ++        +    + +   ++ L         +      +++P   V  
Sbjct: 11  RTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSY 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
               +      VL         +                    G+            R  
Sbjct: 71  YQAKKFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRAL 130

Query: 142 IGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTW 196
             L        +  I+  +   ++ LL           +       +   + RE E L W
Sbjct: 131 GFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKW 190

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 191 TAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 240


>gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI]
 gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 209

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++ + +
Sbjct: 65  EATKQI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVVSI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             +           +S          LT RE E L  I++G+++ 
Sbjct: 117 IAIYEGNANFHPKVTPALL---------GRSAVKKENPFSMLTKREQEVLQEIAKGRSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++I+ K     R+ A  YAV++ 
Sbjct: 168 EIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207


>gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24]
 gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  + E   S  S +      +  +                    GA     V   
Sbjct: 3   VRVVVADDQELVRSGFSMILEAQPDIEVVAEAGD---------------GAEAVAAVERY 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D  R +                 +    F              
Sbjct: 48  APDVLLLDIRMPVMDGLDAARRVCARS---------ACKVVMLTTFDLDEYVYEALYAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +      +     + DV   +   LT
Sbjct: 99  SGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLEALT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 159 AREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGLV 217


>gi|329929253|ref|ZP_08283011.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936739|gb|EGG33180.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 220

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 12/223 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D        +          + VG +       +  +    D ++       L
Sbjct: 1   MIRLLIADDHAMVRRGLQVFLATQPDIDMVGEAANGEETLEQAKLLLPDVVLMDLNMPVL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                 +   K    ++    +    F      +         Y     +   +  G+  
Sbjct: 61  NGIDTTARLKKELPYIK---VIVLTSFVDYDHVLPAIRAGARGYLLKDIEPEELVAGIRR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTS 203
           +F     +  D    +       A   ++      +  +L   T RE E L  I+ G  +
Sbjct: 118 VFQGQVELHPDAAGLLMTHVTSPAGEDEANGSSHQEAAQLNKLTRREQEVLQLIASGMNN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI+  L I+  TV  +++ ++ K     R+ A  YA+++ IV
Sbjct: 178 REISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 220


>gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978]
          Length = 198

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 18/196 (9%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT----------LP 117
                +  +I+ +++P    +     +  K    +Q       P+  +            
Sbjct: 4   PLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDF 63

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                  G++  +   + D    R  L L     + +             +      S  
Sbjct: 64  WEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQ-LSEKEQKAQYTNMYWLTQTVHSSI 122

Query: 178 VHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                D E       LT RE E L W +EGKTS EIA ILG++  TVN ++++ M+K   
Sbjct: 123 AKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNV 182

Query: 231 KTRSGAIAYAVRNNIV 246
             +  A   AV   ++
Sbjct: 183 NNKISAAIRAVMLGLL 198


>gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
 gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus
           donghaensis MPA1U2]
          Length = 213

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 18/221 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E V G     +          +D ++      
Sbjct: 4   VLIADDHHVVRRGLLFFLKTQKDIEVVGEAVNGKEAVEMAATLQPDIVLMDLVMPVMDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +                 L    F      +         Y     +   +   L
Sbjct: 64  QATRLIKEQ--------FPHIIVLMLTSFSDQDHVVPAIEAGAAGYQLKDIEPDELVASL 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L      +      E+              +       +LT RE E L  +++GK++ 
Sbjct: 116 RSLMRGENTLHPKASSELL---------KAPAEPAPHTINQLTPREQEVLAELTKGKSNR 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L ++  TV  +I++I  K A + R+ A  YAV++ +
Sbjct: 167 EIASALFVTEKTVKTHISNIFIKLAVQDRTQAALYAVKHGL 207


>gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 64/239 (26%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +     S +  L      L  +               L               
Sbjct: 2   ITILIVDDHAMVRSGLRMLLNGQADLEVIAEASDGDEGIQAALEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D +   A SE  +    L         +               
Sbjct: 47  RPNVVLMDLSMP--HGKDGLT--ATSELKEKLPELAIL---VLTMHDDDEYLFRAIHAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +      +       +           K  +        L+
Sbjct: 100 AGYVLKNAPHEELLTAIRSVARGDAYLYPTATKRL---MNDYVERMKRGESG-DVYHSLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G  + EIA  L IS  TV  + +++M K   KTR   I YA++  ++
Sbjct: 156 DREKEVLGLTAKGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGLL 214


>gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5]
 gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5]
          Length = 220

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 28/240 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     ++ L    + L  +           +   L               
Sbjct: 2   IKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  S        L     L    F              
Sbjct: 47  EPDIVLMDIRMPVSNGVEGTKLITSS--------LPGVKVLMLTTFKDSALIAEALEEGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + Y         I   +M +   G ++  +      +L  ++            K  EL 
Sbjct: 99  SGYLLKDMSADTIVKAVMTVHSGGMVLPPELTA--QMLNEWKREKQLKGINEIEKPNELL 156

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE+E L  +  G  + EIA  L I+  TV N++++I+ K A + R+ A  Y+VR  
Sbjct: 157 DLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216


>gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 210

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    L  +      +       +L               
Sbjct: 2   IKVLLVDDHEMVRLGVSTYLSTQSDLEIVGEAKDGLEGKKMALSL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++ +       + +             +   L    F    +         
Sbjct: 47  QPDIILMDLVMDNMDGIQATQEILADW--------PKANILIVTSFIDDEKVYPAMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   +    +I      ++  +A                  +LT
Sbjct: 99  KGYILKTSSANEIASAIRRTYAGESVIAPTVNEKL--IAHEVEA------NRHHLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ GK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +N +V
Sbjct: 151 TREREVLQLIAAGKSNQEIADELFITLKTVKTHVSNILSKLGVEDRTQATIYAFQNQLV 209


>gi|149913176|ref|ZP_01901710.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           AzwK-3b]
 gi|149813582|gb|EDM73408.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           AzwK-3b]
          Length = 242

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 21/236 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
                L  +            +  L + +G  H +        EQ         +P   V
Sbjct: 8   RLDSFLEALEGASDIDDLQRLIERLRDEIGVDHVVYHWVSSGGEQYG----CGTYPAAWV 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTFD 136
           +     +  +   V+Q   + F PV     +  +  A             +  Y      
Sbjct: 64  QLYVAKDYLRIDPVVQGCYQTFHPVDWKRLDWSSRAARAFLSDAVAHGIGNQGYSVPLRG 123

Query: 137 VARIRIGLMLLFP----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGRE 190
                    +          +        + L+A Y  +     +          L+ RE
Sbjct: 124 PNGQFALFSVSHHCTDEAWAMFTDTHRRTLILIAHYFNHKALLLEPGRCPLTAQPLSPRE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+ +T ++ G +  ++A  L IS +T+  Y+ S   K        A++ A+   ++
Sbjct: 184 VDVITLLAMGYSRAQVAETLMISEHTLRTYVESARLKLGAINTLHAVSRAITRGLI 239


>gi|329928337|ref|ZP_08282208.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937894|gb|EGG34299.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 599

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 76/240 (31%), Gaps = 19/240 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRW 66
             T  +       D + R++ +D        +  L E             G     L R 
Sbjct: 367 LVTCTLPRQTELKDEVIRLLVVDDHSVIRESLRTLLEEQQDFQVVGTAEDGEQAIELCRQ 426

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              Q   +D  + +       R +  S     +  ++         F    + +      
Sbjct: 427 VRPQLVLMDVEMPNVDGISASRAIKES-----WPHIRIL---ILTTFEDTKQALEAMRSG 478

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +   +  +   G +I +    ++               +     ++L
Sbjct: 479 VDGYLLKSMQPLELAETIRTVHRGGTLIDQGMSHKLFAQLEADNGGDDPSSIKVSSAYDL 538

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L ++SEG     IA  L +S  TV NY +S+  K   + R  A+  A    ++
Sbjct: 539 TPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKAREAGLL 598


>gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
 gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322]
 gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis
           T8]
          Length = 210

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G   +      
Sbjct: 2   IKVMLVDDHEMVRLGVSSYLSIQEDIEVVGEAEN---------------GKIGYEKALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      D  + +                 +    F    +         
Sbjct: 47  RPDVILMDLVMEEMDGIDSTKAILKDW--------PEAKIIIVTSFIDDEKVYPAIEVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   +   R++  +          ++     +         +LT
Sbjct: 99  AGYLLKTSTAHEIADAIRATYRGERVLEPEVT--------HKMMERLTKKQEPVLHEDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I++GK++ EIA  L I+  TV  ++++I+ K     R+ A  YA ++ +
Sbjct: 151 NREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208


>gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
 gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342]
          Length = 595

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPYVRESLSILLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNQAIDLCGRLQPHVILMDLDMQHMNGIEATKKIKQQ-----WPHIRVLIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDEQKEPPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|331699140|ref|YP_004335379.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953829|gb|AEA27526.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 64/223 (28%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L          +D  +     
Sbjct: 4   RVLLADDQALVRAGFRALLDAQPGVGVVAEAADGREAVRLAVEQTPDVVLMDIRMPVLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A          L     +    F              + +     + A +   
Sbjct: 64  LAATREIAS------DPRLSGVRVVVLTTFAEDEYVFEAIRSGASGFLVKDTEPAELVHA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +  +      +  V       LT RE E +  ++ G T+
Sbjct: 118 VRVVADGDALLSPGVTRRL--IEEFAVRSGPAGAVAASALTVLTDREREVVALVAGGLTN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           D+IA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 176 DDIAERLVVSPATAKTHVSRAMGKLGCRDRAQLVVLAYESGLV 218


>gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 241

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 22/241 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  ++    + +S L      L  +                    GA    +   
Sbjct: 19  KVRVVLADDERLVRAGLSLLLAAEPDLEVVGEAAN---------------GAECLAVAGT 63

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +          V           F       T     
Sbjct: 64  TRPDVVVMDIRMPVMDGIEATTRLTADGLGGGDGVPAVL---ILTTFSEDHNVTTAMRAG 120

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-E 185
              +         +   +  L      +       +     + ++           D   
Sbjct: 121 AAGFLLKNSAPQTLATAIRALAKGDGWLDPAITRSL---LRHFSSRAADGQSVPTADISV 177

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G  + EIA  L +S  TV  ++  I+ K     RS A+A A R+ +
Sbjct: 178 LTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVHRILLKLGLSDRSQAVAVAYRSGL 237

Query: 246 V 246
           +
Sbjct: 238 I 238


>gi|297158565|gb|ADI08277.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 218

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   GA+    VR        LD  +     
Sbjct: 4   RVVVADDQELVRSGFVMILDAQPDMEVVAEAGDGAAAIEAVRRHSPDVALLDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 +    F +            + +         +   
Sbjct: 64  IEATGTICQET---------DCRVIMLTTFDSDEYVHDALHAGASGFLLKDVRRDDLVHA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A +     ++      +   LT RE E L  +  G ++
Sbjct: 115 VRVVTAGDSLLAPSVARRL--VADFVRRPRETAAPRSDRLAVLTARERETLQLLGRGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  ++++++ K   + R  A+  A    +V
Sbjct: 173 AEIAAELVVSEHTVKTHVSNVLTKLGLRDRIQAVICAYETGLV 215


>gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 236

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 77/253 (30%), Gaps = 29/253 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +VL  + +     +     +S+ +  +                    G     ++
Sbjct: 1   MKKIRVVLIEDHDLTRVGLKTALQQSEQVEVVGEASN---------------GRQGLQVL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      +L +      + K     Q    L   +       +   +
Sbjct: 46  KLTRPDVAIVDIGLPDIDGIELTQQFKEYLRVK---GGQNTKILILTMHDNKDAVMGAFS 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---- 180
              + Y      + R+   + +       I       +   A       K          
Sbjct: 103 AGADSYSVKDVSIDRLMEAIQVTSEGNSWIDPVIARTVLQQAQNLPGENKDAATVTINAV 162

Query: 181 -------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                       LT RE+E L  I  G+++ EIA  L I+  TV  ++ SI+ K     R
Sbjct: 163 EPEYKEFLSTCPLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDR 222

Query: 234 SGAIAYAVRNNIV 246
           + A   A+R+  +
Sbjct: 223 TQAAVRALRSGWI 235


>gi|16331883|ref|NP_442611.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1001802|dbj|BAA10682.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 209

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 74/239 (30%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ +  R   +  +   +                G     L    
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPDMQVIAQAEN---------------GEQAIALFEEH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +          +++    +    + +  +         
Sbjct: 52  QPDVTLMDLRMPEVEGVAAISAI--------CAIVKFARIIVLTTYDSDEDIYRGLQAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +  +    + I  D   ++    +               + EL+
Sbjct: 104 KGYLLKETEPDELLNAIRTVHRGQKYIPPDVGAKLVQRLS---------------NPELS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++G ++ +IA  L I   TV +++  I+ K     R+ A+  AV+  IV
Sbjct: 149 ERELEVLGSLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGIV 207


>gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +      + L      +  +      +    ++  L               
Sbjct: 10  IRVLIADDQQMVRQGFTVLLNTQPDIEVIGQAVDGLDAVAKVAELA-------------- 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +  R +                 L    F              
Sbjct: 56  -PEVVLMDIRMPELGGIEATRRITT--------ATPEIRVLVLTTFDLDEYVYEALRAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        ++   + ++     ++       +    +   +  +       +  ELT
Sbjct: 107 SGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDDRPR--APLKARVGELT 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 165 ERETEVLALIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 223


>gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661]
 gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661]
          Length = 240

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 13/224 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
            + +      T  +   T  +G   + L         +    + S +P   V        
Sbjct: 17  FLNVSDISEITALIEQQTLALGFDFYALYIRHPVPFTRPKIFIYSSYPKKWVSAYQKGNF 76

Query: 96  DKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                V++        V    P         +     G+ + + +      R    L + 
Sbjct: 77  AAIDPVIENCQVPGKIVLWDEPLSRRGQKVFDAAKEYGIHSGFSACAMAKNRSIGILSMA 136

Query: 148 FP---KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKT 202
                +  ++  ++  ++  L+       +          + EL+ RE+E L W +EGKT
Sbjct: 137 SGKTFEKIMLTPEKQLKLQYLSVLIMEALQQVKDISMSVMNMELSQRELEILKWTAEGKT 196

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EI++IL IS NTVN +   + ++     ++   +YA    ++
Sbjct: 197 SAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAAAIGLL 240


>gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 207

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 23  VSHLPTRSDLLARMIPLD---CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ +    D       L+    TV     + +         + L          LD ++ 
Sbjct: 1   MADIILVDDHHIVRQGLEFLLSTVEEFNVIESFANGASFISY-LSENQPPDIVLLDLVMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                ++   +                 L    +      I+      + Y     + A+
Sbjct: 60  EMNGIEVTEFL-KKNYSDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPAK 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    RII  +    +  +A                  +L+ RE++ L  + +
Sbjct: 112 LIETIRRVLVGERIIHPEAKTVMEAVAKKPH-----------YTNKLSKREIDVLREMVK 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA++NN++
Sbjct: 161 GKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207


>gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CMR15]
          Length = 236

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 71/235 (30%), Gaps = 16/235 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P   D                ++ ++   +G  +            K    +   +P   
Sbjct: 3   PGFQDAYHAFHTAQDERQLFRQIASVVRQLGFDYCCYGIRVPLPVSKPAVAIFDTYPAGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +     S   +    ++        +              +     G++      ++   
Sbjct: 63  MAHYQASGFLEVDPTVRAGASSSDLIVWPVSIRDEAARLWSDARDFGLNVGVARSSWTAH 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREV 191
                L L       +    L ++         LA    + F    +       LT RE 
Sbjct: 123 GAFGLLTLA-RGADPLSAAELEQLSATTNWLANLAHALMSPFLMPKLVPESSAALTARER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 182 EVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236


>gi|163839607|ref|YP_001624012.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953083|gb|ABY22598.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 219

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +     +  + L      +  +                    GA    L    
Sbjct: 3   ISVVLADDQAMVRAGFAALLNSQTDIEVLGQAGN---------------GAEAVSLCAKL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  + +                 L    F          +   
Sbjct: 48  HPDVALLDVRMPELNGLEAAKLILAGWYY--------TKILMLTTFDIDDYVYDALSLGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  +  +  +  +S      +   LT
Sbjct: 100 SGFLLKDALADELVSAVRIVASGEALLAPSVTKRL--IENFAKSRPRSAANKT-RLNNLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +  G ++ EIA  L I+  TV  +++ ++ K   + R  A+  A    +V
Sbjct: 157 DREREVLTLVGRGLSNQEIAAALFIAEQTVKTHVSKVLTKLDLRDRVQAVVLAYDTGLV 215


>gi|271969975|ref|YP_003344171.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513150|gb|ACZ91428.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 69/223 (30%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L R        +D  +     
Sbjct: 3   RVLLADDQTLVRAGFRSILEGEDDIEVVGEAADGVRAVQLTRELGPDVVLMDIRMPELNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +         +       +    F              + +     + A +  G
Sbjct: 63  LEAARQIIA------DDGPAVTKVIILTTFDLDDYVYGALRAGASGFLVKDTEPAELIHG 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     +I       +  +A +   + +       +   LT RE E LT ++ G ++
Sbjct: 117 IKVVARGDALIAPSVTRRL--IAEFAGRVKRPEPGP--EFNGLTEREREVLTLVAGGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L +S  T   +++ IM K   + R+  +  A    +V
Sbjct: 173 DEIAARLVLSPATAKTHVSRIMTKLHARDRTQLVVLAYEAGVV 215


>gi|229525876|ref|ZP_04415281.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv.
           albensis VL426]
 gi|229339457|gb|EEO04474.1| DNA-binding response regulator LuxR family [Vibrio cholerae bv.
           albensis VL426]
          Length = 214

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 4   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 58

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 59  DVSMPIMNGIEATRLIKEE--------VPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 111 ISALKMVQAIKTVHQGATYFCESTTSTL---------FSQEILPVANKPNPLSRREEAIL 161

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 162 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 213


>gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum
           CFBP2957]
 gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum
           CFBP2957]
          Length = 236

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P   D        +        + ++   +G  +            K    +   +P   
Sbjct: 3   PDFQDAYHAFRTAEDEHQLFREVASIARQLGFDYCCYGARMPLPVSKPAVAIFDTYPAGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           ++    +        ++        +              +    AG++      ++   
Sbjct: 63  MQHYQANGFLDIDPTVRAGASSSDLIVWPVSIRDDAARLWSDARDAGLNIGVARSSWTAH 122

Query: 139 RIRIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                L L      +   +          +  LA    + F    +    +  LT RE E
Sbjct: 123 GAFGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTARERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 183 VLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 207

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +       +  L    +    +       S                       
Sbjct: 2   IKVFIVDDHPMVIEGIKALLHDEENYPVLGSATDAQSALQAFRQAL-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L   +          +L+         F              
Sbjct: 48  -PDVVLLDINLPDMNGIELCERIKKEF-----PILKVLGIST---FKERSYITRLMEKGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +         +    I            +          LT
Sbjct: 99  SGYVLKNVDKEELTEAIRQVAAGRIYFSMEAAAAI------------TGQSSSPVVPILT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EG T+ EIA  L IS  TV+++  +++ K A K  +  I  A+ + ++
Sbjct: 147 SREKEVLALIAEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGVI 205


>gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78]
 gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78]
 gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 226

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G                +D  +     
Sbjct: 19  RVLIVDDHQVVRRGLRTFLEIQDDIEVVGEAADGDEGVARAGELRPDVILMDVKMPGTDG 78

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +     +           L    F      +         Y     D   +   
Sbjct: 79  VEALRTLRALGNE--------VRVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPEALAGA 130

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +           +       +   LT RE E L  I++G+++
Sbjct: 131 IRSVHAGHVLLQPEVAGMLL--------AQEEQAPQQPRGGSLTEREREVLGLIADGRSN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++++I+ K     R+ A  +AVR+  
Sbjct: 183 REIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 224


>gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L]
 gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L]
          Length = 210

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMDGMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        + ELT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 ERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|296130230|ref|YP_003637480.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022045|gb|ADG75281.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 239

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 16/242 (6%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + +   +    +      L  ++           +      V           
Sbjct: 7   VRVALVDDQQLVRAGFRMVIDSQPDLEVVLEAGDGAQAVRALDPAARNV---------TG 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    +    +     D        P  +    F      +       
Sbjct: 58  PVDVVLMDVRMPTMDGLEATERIVARGTDDA----PAPRVIVLTTFDLDEYVLAAIRAGA 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDF 184
           + +         +   +  +     +I       +    + A        + D       
Sbjct: 114 SGFLLKDAPPEEMLAAIRTVHRGDAVIAPSSTRRLLEHLVTALPGDAPAATADPAHQAVA 173

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G+++ EI   L ++  TV  ++  I+ K   + R  A+  A    
Sbjct: 174 QLTEREREVLVLMARGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVVAYEAG 233

Query: 245 IV 246
           +V
Sbjct: 234 LV 235


>gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 240

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   +         +   T+ +   ++ L         +    + + +P   V 
Sbjct: 10  RRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPQAWVT 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP--------ENITPPAGMDNRYCSLTFDVARI 140
                       VL+        +              +     G+            R 
Sbjct: 70  HYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRA 129

Query: 141 RIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLT 195
              L +     R       +    + LLA    +       D+    +   + RE E L 
Sbjct: 130 LGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 190 WTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQIACYAAATGLI 240


>gi|15641290|ref|NP_230922.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586548|ref|ZP_01676334.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121730066|ref|ZP_01682473.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147674446|ref|YP_001216842.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153820380|ref|ZP_01973047.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153823763|ref|ZP_01976430.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153826597|ref|ZP_01979264.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|227081449|ref|YP_002810000.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229505135|ref|ZP_04394645.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX
           330286]
 gi|229511193|ref|ZP_04400672.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33]
 gi|229515653|ref|ZP_04405112.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229518312|ref|ZP_04407756.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9]
 gi|229529641|ref|ZP_04419031.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           12129(1)]
 gi|229608155|ref|YP_002878803.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           MJ-1236]
 gi|254286624|ref|ZP_04961580.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|254848401|ref|ZP_05237751.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297578869|ref|ZP_06940797.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498631|ref|ZP_07008438.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9655763|gb|AAF94436.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549227|gb|EAX59259.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121628186|gb|EAX60711.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|126509076|gb|EAZ71670.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126518710|gb|EAZ75933.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146316329|gb|ABQ20868.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|149739609|gb|EDM53829.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|150423382|gb|EDN15327.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227009337|gb|ACP05549.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227013194|gb|ACP09404.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229333415|gb|EEN98901.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           12129(1)]
 gi|229345027|gb|EEO10001.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC9]
 gi|229347422|gb|EEO12382.1| DNA-binding response regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229351158|gb|EEO16099.1| DNA-binding response regulator LuxR family [Vibrio cholerae B33]
 gi|229357358|gb|EEO22275.1| DNA-binding response regulator LuxR family [Vibrio cholerae BX
           330286]
 gi|229370810|gb|ACQ61233.1| DNA-binding response regulator LuxR family [Vibrio cholerae
           MJ-1236]
 gi|254844106|gb|EET22520.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297536463|gb|EFH75296.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297542964|gb|EFH79014.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 216

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 6   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 61  DVSMPIMNGIEATRLIKEE--------VPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 113 ISALKMVQAIKTVHQGATYFCESTTSTL---------FSQEILPVANKPNPLSRREEAIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 164 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 215


>gi|297155058|gb|ADI04770.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 221

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 76/244 (31%), Gaps = 28/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + +++  ++E   + +  L +    L  +                    GA    
Sbjct: 1   MNTAPLTVLIADDEELTRTGLRALLSAKPDLEVVGEAAD---------------GAEVLP 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LVR        +D  +      +  R +  +           P  +    F +       
Sbjct: 46  LVRTTRPDVVLMDVRMPGMDGIEATRQLRSTL---EDP----PKVVVITTFESDEHVYDA 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +         I   + L+     ++  D +  +       A            
Sbjct: 99  LRAGADGFILKRTPSQAIAHAIRLVATGDSVLFPDAVRRL------VAARPLPPVGPAAG 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  ++ G ++ +IA  L +S  TV  ++++++ K   + R+ A+  A  
Sbjct: 153 HAPLTARETEILRLMATGLSNPDIAGRLTVSLETVKTHVSNLLTKLGAQNRTQAVILAYE 212

Query: 243 NNIV 246
           + +V
Sbjct: 213 SGLV 216


>gi|300087957|ref|YP_003758479.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527690|gb|ADJ26158.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I L  +     S    L    +    +   D                G +   LV   
Sbjct: 3   TKIFLADDHTVVRSGFKALLEAENNFTVIGESDD---------------GLTTIRLVAEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      ++ R +A                +   ++              
Sbjct: 48  KPDILISDLMLHDISGIEVCRQVAKINPKIG--------IIMLSMYGNEAYVQGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      V  +   +  +      +      E+   A        S +       +L+
Sbjct: 100 RGYILKEASVDELVAAVREVAAGRHYLS----TELSQRAIAYYIKQPSAEEETSPYEQLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +    T  +IA  L IS  TV  + A++MRK   K R+  I + ++N I+
Sbjct: 156 NREREVLHLVVRDYTGADIAKKLFISPRTVEAHRANLMRKLGMKNRTQLIKFCLQNGIL 214


>gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W]
          Length = 192

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 10/180 (5%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q+++ D ++       +    A     +Y   ++         F      I    
Sbjct: 19  ALHFVQKERPDVVLMDVSMPKMDGIEATKRLKQYDETIKVLILSS---FSEQDYVIPALE 75

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y        ++   ++ +              +                      
Sbjct: 76  AGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPAL-------MGRSAVKKEVENPFS 128

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 129 MLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188


>gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 216

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 66/233 (28%), Gaps = 29/233 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L    + L  +   +                G +   LV+  
Sbjct: 3   IRILLVDDQSLIRRGLKALLKLEEDLQVVGEAEN---------------GQTAISLVKTL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +                 L    F              
Sbjct: 48  QPDVILMDIRMPVMDGVAATREICQQ--------FPDTKVLVLTTFDDDQYVTQAIQCGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +      +      +   +AA   +   S    W    ELT
Sbjct: 100 AGYLLKDTPPEELAQSIRAVQKGYTQLGPGIGRK---VAAQMRDPTPSPPPGWD---ELT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  I+ G ++ EIA  L IS  TV N++  I+ +   + R+ A   A
Sbjct: 154 PREQEILRLIATGASNREIAQTLYISEKTVKNHVTHILSRLNVRDRTQAAILA 206


>gi|323358243|ref|YP_004224639.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274614|dbj|BAJ74759.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 222

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 69/243 (28%), Gaps = 24/243 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +     +    + +  D +  +                    G       
Sbjct: 1   MSELRVLLVDDHAMMRAGFRTILSLEDDITVVGEAAT---------------GREAISAA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +                 L    F          +
Sbjct: 46  AELRPDVICMDVQMPDMDGLEATRLLTADPDSD-------AAILIVTTFDRDDYLFAALS 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGK 182
              + +         +   + ++     ++  +    +     +        S       
Sbjct: 99  AGASGFLLKNAGPEELVSAVRIVGAGDALLAPEVTRRVIARFASGGAPEPAASVRPPLSL 158

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  ++E  ++ EIA  L I   TV  +++++++K   + R  A+  A R
Sbjct: 159 AEPLTERESEVLKLVAEALSNAEIAARLFIGEATVKTHVSNVLQKLGARDRVQAVVLAHR 218

Query: 243 NNI 245
           + +
Sbjct: 219 HGL 221


>gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 211

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEKALHFVQKEKPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------MGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV+  
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209


>gi|254414589|ref|ZP_05028354.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420]
 gi|196178437|gb|EDX73436.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420]
          Length = 217

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +DE     +S    +   L  +                    G +   L    
Sbjct: 1   MRILLVEDDELFRLGLSTRLQQEPGLEIVAEAVD---------------GETAVELTNQY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +      +  R +     +    +L   +    P+           A   
Sbjct: 46  LPDVVLLDVGLPGIGGVEACRQIKQQHPEL--PILVLTSHSQKPLI------ERLIAAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC    +   + + L  +        +    EI      Q             +  LT
Sbjct: 98  SGYCLKGIEAEVLILALRSVAAGASWWDKTSTNEIRAAVGEQTPEVAQSTEESSAN-PLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ GK++ EI  +L I+  TV  ++ +I++K   + R+ A   A++  +V
Sbjct: 157 QREQEILALIAAGKSNQEIGELLHIATGTVRVHVHAILQKLDVRDRTQAAVLAIQKGLV 215


>gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
 gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis
           BMB171]
          Length = 192

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 10/180 (5%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q+++ D ++       +    A     +Y   ++         F      I    
Sbjct: 19  ALHFMQKERPDVVLMDVSMPKMDGIEATKRLKQYDETIKVLILSS---FSEQDYVIPALE 75

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y        ++   ++ +              +                      
Sbjct: 76  AGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPAL-------MGRSAVKKEVENPFS 128

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 129 MLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188


>gi|323356651|ref|YP_004223047.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273022|dbj|BAJ73167.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 221

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 9/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   +     +  + E   G +   L R         D  +   
Sbjct: 1   MTTVIVVDDQALIRTAVRDLLDAAEGISVVGEAADGEAGVDLARRLRPDVVVSDIRMPRR 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L               L     L    F      +       + +     +   I 
Sbjct: 61  DGIELTA------LVCDDPALTETRVLILTTFEEDDYVVAALRAGASGFIGKGAEPEDIV 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++ +   G ++         L+  Y      +          LT RE E L  ++ G+
Sbjct: 115 RAVLSVHEGGALLSPAATR--ALIEKYVRTTGAADVPSPVSLDALTDREREVLLHVARGR 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L IS +T   ++ + M K     R+  +  A  + ++
Sbjct: 173 SNDEIAAHLYISPHTAKTHVKNTMLKLGAHDRAQLVIAAYESGLL 217


>gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 88/241 (36%), Gaps = 15/241 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S+++    +S L A +        +   +  ++   G SH  L+     ++  L  ++ 
Sbjct: 1   MSYMTTSERQSLLSAELATARTRSLFAQALGRVSTAFGLSHATLMHAPSPEDLLLKPLLI 60

Query: 80  -SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGM 126
            S  P   VR    +   +      R  +   P    L               +     +
Sbjct: 61  ESSLPVAYVRDFDRAHMMRGCPFGVRLRQSAVPPAWHLNDASNGQAFPAELRALMLRHAI 120

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFE 185
                  T      R+       +   + +    E+ ++  +  + + +           
Sbjct: 121 PAGVAMPTIAADGQRLVFWFCG-ERAALGQSETNELAMIILHALDAYNAVKRNEECAHNA 179

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 180 LSTRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|17229630|ref|NP_486178.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131229|dbj|BAB73837.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 209

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ +  R   +  +   +                      L    
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPEMQVVAQAENGEQV---------------IALFEEH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +            +    +    + +  +         
Sbjct: 52  QPDVTLMDLRMPEVEGVAAISAI--------CATAKSARIIVLTTYDSDEDIYRGLQAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +  +    + I  D   ++    +               + EL+
Sbjct: 104 KGYLLKETEPDELLNAIRTVHRGHKYIPPDVGAKLVQRLS---------------NPELS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++G ++ +IA  L I   TV +++  I+ K     R+ A+  AV+  IV
Sbjct: 149 ERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGIV 207


>gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yfiK
 gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis]
 gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 220

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 28/240 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     ++ L    + L  +           +   L               
Sbjct: 2   IKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  S        L     L    F              
Sbjct: 47  EPDIVLMDIRMPVSNGVEGTKLITSS--------LPSVKVLMLTTFKDSALIAEALEEGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + Y         I   +M +   G ++  +      +L  ++            K  EL 
Sbjct: 99  SGYLLKDMSADTIVKAVMTVHSGGMVLPPELTA--QMLNEWKREKQLKGINEIEKPNELL 156

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE+E L  +  G  + EIA  L I+  TV N++++I+ K A + R+ A  Y+VR  
Sbjct: 157 DLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216


>gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241]
 gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241]
          Length = 592

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       D L R++ +D        +  L +             G     
Sbjct: 360 EEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAID 419

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 420 LCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRILIFTT---FQDTEQALES 471

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAT 527

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+ 
Sbjct: 528 AYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALE 587

Query: 243 NNIV 246
             I+
Sbjct: 588 IGII 591


>gi|332704010|ref|ZP_08424098.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554159|gb|EGJ51203.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 210

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  +   +  +  +   D       ++                  
Sbjct: 2   IRIMIADDHPIVREGLKQILAGAHDIQVIAEADTGYDLLDKLPKF--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+++ +   +       L        P        I       
Sbjct: 47  QPDTILLDIKMPGIGGLDVLKQIKSLK-----PELPVLILSMHP---EEQYAIRVLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +      ++   +  +   G+ I       +              D H      L+
Sbjct: 99  AGYLTKNSAPEKLVDAIRKVNQGGKYISSSLAERLA--------FDLDSDSHKSSHEFLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I++GKT  EIA  L +S  T++ Y A I+ K   K  +    YA++N +V
Sbjct: 151 DREYQVLCMIAQGKTVSEIADTLKLSVKTISTYRARILEKMKMKNNAELTYYAIQNGLV 209


>gi|326331827|ref|ZP_08198114.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
 gi|325950324|gb|EGD42377.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
          Length = 224

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 7/222 (3%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D +     +   +  + ++  + E V G     L R        +D  +      
Sbjct: 5   LLVADDQVLIRTAVVQLLRSSGQIDVVGEAVNGREAVRLARELRPDVVLMDIRMPVMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +           L+    L    F      +       + +     +   I  G+
Sbjct: 65  EATSTIRADG------DLESTRVLILTTFEEDEYLLAALRAGADGFIGKGAEPDEIVRGV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +     ++       +                   +  ELT RE E L  ++ G ++ 
Sbjct: 119 LAVRDGKSLLSPAATRSLISRYLKVDRRATGGRFDARRLEELTPREREILVLVAGGLSNQ 178

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  T   ++ ++M K     R+  + +A  + +V
Sbjct: 179 EIADELVISPFTAKTHVNNMMTKLDAPGRAQLVIWAYESGLV 220


>gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
 gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB]
          Length = 240

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           RS++  +   L         +   TE +G  +F  +        +    + S +P   V+
Sbjct: 10  RSEVKQQFQALMACSDLKPLLQQFTESLGFDYFAFLIQHPVPFSRPRIHLHSTYPKLWVK 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +  T                 G+ + +        R 
Sbjct: 70  RYEKQNYYAVDPVLSLCQRPGRGLMWTEEMFAGAGNLWREAREYGLQSGFSCSAMAPNRA 129

Query: 141 RIGLMLLFPKGRII---LRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195
              L +   +   +     +   ++ LLA    +  +    D       E + RE+E L 
Sbjct: 130 LGILSISSQQPIPLKLCHEELEVKLHLLAELSLDTLERFSDDAMMVLKKEFSQRELEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W  EGKT+ EI++IL IS +TVN +  ++ ++     ++    YA    ++
Sbjct: 190 WTGEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus
           cereus ATCC 10987]
 gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC
           10987]
          Length = 592

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       D L R++ +D        +  L +             G     
Sbjct: 360 EEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAENGNQAID 419

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 420 LCGRLQPHVILMDLDMQHMNGVEATKKIKQQ-----WPHIRVLIFTT---FQDTEQALES 471

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETSQSKAT 527

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+ 
Sbjct: 528 AYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALE 587

Query: 243 NNIV 246
             I+
Sbjct: 588 IGII 591


>gi|308177198|ref|YP_003916604.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307744661|emb|CBT75633.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 230

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 7/224 (3%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D L         ++    M  + E   G                +D  +      
Sbjct: 9   VALVDDQLLVRSGFRMLINSQDDMEVIVEAGNGRDALAAPLMSQADVILMDVRMPEMDGI 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +   EK         P  +    F      +       + +         +   +
Sbjct: 69  EATERLLDPEKKAAD----GPKIIVLTTFDMDEYALRAIQAGASGFLLKDAPPEELLESV 124

Query: 145 MLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             +     +I       +   +    + N  +  +        LT RE E    I+ G +
Sbjct: 125 RTVNRGDAVIAPSTTRRLLDHMTPMLKKNAAQHDEHLIAAVESLTPREREVFGLIAVGLS 184

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R  A+  A +  +V
Sbjct: 185 NPEIAEKLFLSEATVKTHVGHILAKLEARDRVQAVVIAYQTGVV 228


>gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 201

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 75/211 (35%), Gaps = 13/211 (6%)

Query: 37  IPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             +   ++    +  + E   G     L+         +D  +      + ++ ++  E 
Sbjct: 3   QGIRSLLALDDGIEVVAEAGDGRQAVELIPQVRPDVVLMDMRMPVMSGLEALQVLSRQE- 61

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                  Q P  +    F      +         Y      +A++   +  +   G ++ 
Sbjct: 62  -------QLPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVTLAQLVGAIRTVADGGSLVQ 114

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +     +  N F S      +   LT RE E L  ++ G ++ EIA  LG++  
Sbjct: 115 PAVTQRLLSGLEHMRNEFVSL----DRPDPLTDRETEILRLMASGFSNKEIANSLGVAEG 170

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ N++++I+ K   + R+ A+  A    +V
Sbjct: 171 TIKNHVSNILSKLGVRDRTRAVLKAFELQLV 201


>gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R                ++     +    +        G                +D  
Sbjct: 6   IRVMIADDQVMVRQGFTVLLNAQPDIEVVGQA-----VDGLDAVEKAAELAPDVVLMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +  S  D           L    F              + +       
Sbjct: 61  MPRLGGIDATERVIRSAPD--------TKVLVLTTFDLDEYVYDALRAGASGFLLKDASA 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   + ++     ++       +  +  +             +   LT RE E L  I
Sbjct: 113 EQLAEAVRVVAAGDGLLAPGVTRRL--ITEFTRMRSGPRSPLKERVGTLTERETEVLALI 170

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  YA  + +V
Sbjct: 171 AQGLSNAEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESGVV 219


>gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271]
 gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271]
          Length = 592

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       D L R++ +D        +  L +             G     
Sbjct: 360 EEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAID 419

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 420 LCGRLQPHVILMDLDMQHMDGIEATKKIKQQ-----WPHIRVLIFTT---FQDTEQAVES 471

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAT 527

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+ 
Sbjct: 528 AYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALE 587

Query: 243 NNIV 246
             I+
Sbjct: 588 IGII 591


>gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51]
 gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 68/240 (28%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +     S ++ L    D +  +                    G   F L   
Sbjct: 20  PIRILIGDDHAIVRSGLTMLINSHDDMEVVGTAAD---------------GRETFELAMK 64

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +    P       A          +Q        +              
Sbjct: 65  LKPDVILLDLSM----PPGENGLSATLRIKDAAPEIQIL---ILTMHDDEEYIFKILQAG 117

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +   +  ++     +       +           +          +L
Sbjct: 118 ASGYILKSAYDNDLINAIRTIYHGNAYLGPSITKTL------IHEFAQRSLHGNESGTDL 171

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L+ ++ G ++ EIA  L +S  TV +Y + I  K   KTR   + YA++  ++
Sbjct: 172 TVREQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTRHELVRYALKKGLM 231


>gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)]
 gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 210

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA      +        +D  +      
Sbjct: 4   VLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAQELKPDVILMDVKMPGMDGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +   +             L    F      +         Y     D   +   +
Sbjct: 64  DALRRLRELDN--------HARVLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++  +    +           +      G+   LT RE E L  I++G+++ 
Sbjct: 116 RSVHAGHILLQPEVAGALL--------SQEESSSGPGRAGSLTEREREVLGLIADGRSNR 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 168 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 207


>gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B]
          Length = 220

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S V  L  R      +                    G     LV   
Sbjct: 2   IRILLIDDHTLFRSGVKALLQRQPDFEVVGEASD---------------GLEGVKLVEQV 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + S    + +  +  +  +           L   V               
Sbjct: 47  EADVVLLDLDMPSMNGREALEQIRETHPN--------LAVLMLTVSEDCEALGECLKLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +   +    +I    + +     +      ++          LT
Sbjct: 99  RGYLLKKIDQDFLLRSIRAAYNGDSVISPQMMTKFVNRLSEPPEAARTRQAQGTDPTVLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L W++ G ++ EIA  L ++ +TV  ++ SI+RK    +R  A  YA+ + I
Sbjct: 159 RRERQTLAWLARGVSNKEIARALNLAESTVKVHVQSILRKLNLSSRVQAAIYAIEHKI 216


>gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus
           neapolitanus c2]
          Length = 237

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 16/233 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DL++++   +   S   ++      +G  +                ++ +++  +  R
Sbjct: 5   QGDLVSQIQSAENEESAFKKIEDEALALGFENAAYGLRLNLNITNQKVVMMNNYSQNWKR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       V++   +   PV  +                  +   +   + D    
Sbjct: 65  RYTDENYISIDPVVKHGNKSLMPVVWSSNKITENKNFWEDAYSHNLKYGWSQASADQVGR 124

Query: 141 RIGLMLLFPKGRIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           R  L  L      I    L E+         ++ +  +   +          LT RE + 
Sbjct: 125 RGLL-TLTRGHEPISELELKELQYRLTWLTQISHHCMSEIITTKKMPETMITLTMREKDV 183

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKTS E + I+ I+  TVN +IA+ M+K     ++ A   A    ++
Sbjct: 184 LRWTAAGKTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAAMLGLL 236


>gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 223

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 75/242 (30%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  +++  +       V  L  RS     +                    GA    L 
Sbjct: 1   MGKKRVLIVDDHPLFREGVKSLVERSANYQAVGEA---------------GCGAEALALA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      ++VR +            +       P F           
Sbjct: 46  QELKPDLVTMDVSLPDMSGIEVVRGILDL-----APETRILMLSMYPKFD---YVAEAFK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       AR+  G   L      +      ++  +A       +   +   K  
Sbjct: 98  AGAKGYVVKETTTARLIQGFDALCRGEFFVDGQVSQDL--VAKLAQGAARDQALQDEKYG 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  ++EG ++ +IA  + +S  TV N+  ++M+K    ++   + YA R  
Sbjct: 156 LLTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLG 215

Query: 245 IV 246
           ++
Sbjct: 216 LI 217


>gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
 gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048]
          Length = 592

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 83/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIRDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNQAIDLCGRLQPHVVLMDLDMQHMDGVEATKKIKQQ-----WPHIRVLIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALDSLRNGADGFLLKSIETLELANTIRLIHRGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +            +ELT RE+E L  +++G     IA  L +S  TV NY +S   K 
Sbjct: 514 KFDEQIETPQSKATAYELTTREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASSAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   ++
Sbjct: 574 GVRNKEEAVQKALEIGVI 591


>gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 227

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 72/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  + E     ++ +    D +  +                    G     L +
Sbjct: 14  QSIKVLLVDDHEMVRIGLAAVLDTEDGIEVVGEASN---------------GMDGIRLAQ 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++      +  R +                 +    +    +       
Sbjct: 59  AYKPDVVLMDLVMEGMDGVETTRKILEL--------FPDCKVIVLTSYLDDSKLYPVIEA 110

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T     I   +        ++           AA   N F+       K  E
Sbjct: 111 GAFSYLLKTSRANEIADAIRAAARGQSVLESQV-------AAKMMNRFRQPQQTTAKAHE 163

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  +++GK++ EIA  L I   TV  ++ +I  K     R+ A  YA +  
Sbjct: 164 QLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHVTNIFSKLGVDDRTQAAIYAHKQG 223

Query: 245 I 245
           +
Sbjct: 224 L 224


>gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24]
 gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24]
 gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24]
          Length = 213

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 71/226 (31%), Gaps = 17/226 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            + V  +    D       L   +     +  + E   GA      +        +D  +
Sbjct: 1   MADVIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAQELKPDVILMDVKM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D +R +   +             L    F      +         Y     D  
Sbjct: 61  PGMDGVDALRRLRELDN--------HARVLVVTSFTEQRTVVPALRAGAAGYVYKDVDPD 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     ++  +    +           +      G+   LT RE E L  I+
Sbjct: 113 ALAGAIRSVHAGHILLQPEVAGALL--------SQEESSSGPGRAGSLTEREREVLGLIA 164

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 165 DGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 69/244 (28%), Gaps = 33/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             I ++ I+L  +       V  +         +   +                G     
Sbjct: 1   MAIAEITILLADDHAVMRDGVRMVLEAQPDFRVIGTAND---------------GTEAVD 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD  +         R +                 +F  +          
Sbjct: 46  LADALHPDLAVLDIAMPGMNGLAAAREIRSRS--------PETKVIFLSMHEGEEYLKEA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +      +    + ++  L           D    K
Sbjct: 98  LRAGATGYVLKRAAATELVSAIRAVQRGDSYLDPALIAKLNQL----------GDSDTVK 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE+E L  ++EG T+ +IA  L IS  TV ++  +IM K     R+  + YA+R
Sbjct: 148 LADLTDRELEVLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIMEKLDLHDRTDLVKYAIR 207

Query: 243 NNIV 246
             ++
Sbjct: 208 RGMI 211


>gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 214

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 72/238 (30%), Gaps = 29/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  ++E   + +  + T    +  +                    G +     R  
Sbjct: 3   VRVVVVDDNELLRAGLVTVLTSDPDIEVVGQAAD---------------GPAGVRACREH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +           L     L   +F      +       
Sbjct: 48  RPDLVLMDVEMPGGDGIVATRRIVTD--------LPDVRVLILTMFDLDDYVVEALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +         +    +  +        +     +       ELT
Sbjct: 100 AGFLLKTTPPRDLIRSVRQCAAGETTVGPTVMARL------VDSYVGHQEPPPPGLAELT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GRE++ L  +++G+++ EIA  L ++  TV  ++A I+ K   + R  A+  A R  +
Sbjct: 154 GRELDVLRCLADGRSNAEIAGELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCGL 211


>gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
 gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28]
          Length = 592

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDI 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGDQAIDLCGRLQPHVVLMDLDMQQMDGVEATKKIKQQ-----WPHIRVLIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTKQALDSLRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q +            +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K 
Sbjct: 514 QFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|153801325|ref|ZP_01955911.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|255745673|ref|ZP_05419621.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS
           101]
 gi|262159050|ref|ZP_06030162.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE
           91/1]
 gi|262169409|ref|ZP_06037101.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27]
 gi|262190004|ref|ZP_06048308.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT
           5369-93]
 gi|124123150|gb|EAY41893.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|255736748|gb|EET92145.1| DNA-binding response regulator LuxR family [Vibrio cholera CIRS
           101]
 gi|262022222|gb|EEY40931.1| DNA-binding response regulator LuxR family [Vibrio cholerae RC27]
 gi|262029235|gb|EEY47887.1| DNA-binding response regulator LuxR family [Vibrio cholerae INDRE
           91/1]
 gi|262034112|gb|EEY52548.1| DNA-binding response regulator LuxR family [Vibrio cholerae CT
           5369-93]
 gi|327483964|gb|AEA78371.1| DNA-binding response regulator, LuxR family [Vibrio cholerae
           LMA3894-4]
          Length = 212

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 2   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 57  DVSMPIMNGIEATRLIKEE--------VPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 109 ISALKMVQAIKTVHQGATYFCESTTSTL---------FSQEILPVANKPNPLSRREEAIL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 160 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 211


>gi|110678944|ref|YP_681951.1| transcriptional activator protein RaiR, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455060|gb|ABG31265.1| Transcriptional activator protein RaiR, putative [Roseobacter
           denitrificans OCh 114]
          Length = 239

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             ++LA +   D        ++ L  + G  H +    D   EQ         +  +   
Sbjct: 7   VEEVLAALEQADTLEGINEAIFTLRGHFGVEHMVYHWVDSAGEQYG----YGTYSLEWAA 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----------AGMDNRYCSLTFDV 137
                   +   V+    + F PV     +  +                +  Y       
Sbjct: 63  RYQEQNYIRVDPVVIGCYQRFHPVDWKRLDWSSKAARALRAEAATYGLGNQGYSIPIRGP 122

Query: 138 ARIRIGLMLLFP----KGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREV 191
                   +       +      +   E+ L+A Y       ++      +   L+ RE+
Sbjct: 123 NGQFALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQKALEFEPNKTPEQSQALSPREI 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +T ++ G    ++A  L IS +T+  YI S   K      + A+A A+   ++
Sbjct: 183 DAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVARALSRGLI 237


>gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 234

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L               +      +G  +        F       ++ S+ P         
Sbjct: 9   LNEFSASKNPDHINSVLTHAASALGLEYATYAMRRPFPICNRQIVMVSNCPVRWRERYID 68

Query: 93  SEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++      V +       PV  +           +     G+ + + S++         L
Sbjct: 69  AQFINIDPVFKAAIGSDEPVVWSAQHGASRSRFWDEALSFGIAHGWSSVSRGADGTLGIL 128

Query: 145 MLLFPKGRI------ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            L      I      + +  +  +   A      F      +     LT RE + L W +
Sbjct: 129 TLSRSSDPIEPAEKILNQSTVHWLAHAAHLAMAPFLPAGDEFDP--TLTQRETDVLKWTA 186

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EI++IL IS +TVN ++ +I+ K  T  +  A+A A    ++
Sbjct: 187 DGKTAYEISLILSISESTVNFHVKNIVAKLGTANKVHAVAKAALMGML 234


>gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942]
 gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942]
          Length = 218

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            + R +     P   +    +I     ++ +          G     L +        +D
Sbjct: 4   HKIRVALADDQPLVREGFRFVINAQPDMAVSGEAG-----DGHEIIALAKKTKPDVILMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             + S    +  + +          +L     +    F T              Y     
Sbjct: 59  VQMPSCSGIEAAKDIKS--------ILPDTKIVILTTFDTEEYVFEGIRAGAVGYLLKDT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        I       +I            +  +        T RE+E L 
Sbjct: 111 LPEELIDAIRAASRGEAIFRTVTAAKIISETFRAKQQPYTEKLAEP----FTKRELEVLQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  ++EIA  L +S +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 167 QMAYGLRNEEIADKLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNGIV 217


>gi|283457818|ref|YP_003362412.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133827|dbj|BAI64592.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Rothia mucilaginosa DY-18]
          Length = 275

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 77/274 (28%), Gaps = 44/274 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  +       +S L      L  ++  D  ++                 ++  
Sbjct: 10  QPIRVMLVDDQRLVRGGLSMLVNSQPDLQVVMEADDGLAAIDVFDR----------MVSE 59

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   +D  +      +  R +   +  +     +R   +    F       +    
Sbjct: 60  GHAPQVILMDVRMPHCDGLEAARRILERDAQRGVAEEERVRIIMLTTFDIDEYVYSAVRA 119

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLL------------------ 165
             + +        ++   +  +     +I       +   ++                  
Sbjct: 120 GASGFLLKDTPPEQLLEAIRTVHRGDAVIAPSATRRLLEHMIPVLDSPAGVPAAPVPVAP 179

Query: 166 --------------AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                         A + +        H     +L+ RE E L  I+ G ++ EI   L 
Sbjct: 180 PAAGSELPKATFIPAEHASFEPVQDYPHRELIEQLSPREFEVLGLIARGLSNAEITRELV 239

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S  TV  +++ ++ K   + R  A+  A    I
Sbjct: 240 LSEATVKTHVSHVLAKLGARDRVQAVIMAYEAGI 273


>gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 226

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V +++  + E   + ++ +  R   +  +                    GA+    V 
Sbjct: 12  SPVRVLIVDDHELARAGIAAVLMREPGIEVIGEAGD---------------GAAALDFVS 56

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +           ++    +   V       +     
Sbjct: 57  RHPVDLVMMDLQMPGMDGIEATRRIKAL-----CPAIR---VIMVTVQAKPDALMDALRA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I   +  +      +  D      L+      +  +          
Sbjct: 109 GVAGYLLKDASRREIIGAVRQVLRGDAFLNPD------LVMQTLRRLASATPDDEPPVEP 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + +GKT+ EIA  L IS  TV  ++  I+ K     R+ A   A+   +
Sbjct: 163 LTAREQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 9/225 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L          +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAARLAGETQADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     +   +   
Sbjct: 64  LAATRLISA------DPGLTHVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPEELLNA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGK 201
           + +      ++       +      Q +    +       +   LTGRE E L  ++ G 
Sbjct: 118 IRVAAGGEALLSPAATKGLIAKFLAQGDGLDDERDPARAERLDALTGREREVLVQVAGGH 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 SNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 222


>gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
 gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis
           ATCC 51599]
          Length = 237

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 15/226 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
                    +    +      +   H            K    +  ++P         + 
Sbjct: 12  HADESTDMRTVFSTIEKAAHALAFDHVAYCYQASLPASKPRITLIDNYPKAWRARYLEAG 71

Query: 95  KDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLML 146
             +    LQ       P+  T             +   G+ + +     D       +  
Sbjct: 72  YLEQDPRLQCGARSQRPIMWTDELFSEVPALWRDSHEHGLCHGWSQSVQDGPGGMG-MTS 130

Query: 147 LFPKGRIILRDRLWE----IGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEG 200
           L      +    L E    +  LA     +           +   LT RE+E L W ++G
Sbjct: 131 LSRTLPALSAHELNEKYDRMQWLAQMTHTLLSRIIRSQNAARVRHLTSREIEVLKWTADG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K+S +IA IL +S+NTV+ +I + ++K     ++ A+  AV   ++
Sbjct: 191 KSSQDIADILTLSKNTVDFHIKNTVQKLNVPNKTAAVVQAVLLGLI 236


>gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 239

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 14/228 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ---EQKLDSIVSSDWPFDLVR 88
            +A +     + +    + A     G +  +       Q   E++L +++ S WP    R
Sbjct: 12  FVAAVDCAPTSEAVADILLASVRSFGFTKVVAGVVPSPQVSAEEQLSNVLMSRWPAAWSR 71

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVA 138
             +          +QR          +                   G+++ +      + 
Sbjct: 72  RYSSKGYLTEDPTIQRVRSSIEAFEWSELSAVSIAARNIMEEAADFGLNHGFTVPLHTLD 131

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                L +   +   +       + L+A Y                 LT RE + L WI+
Sbjct: 132 GEYAALSIAGDRCE-LPASFRGVVQLMATYAFAKAIGQKRAINASPRLTIREADVLHWIA 190

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGKT  EI+ ILG+S + V+     +  K     R   I+ A+R  ++
Sbjct: 191 EGKTDWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAMRLGVI 238


>gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
 gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sp. AT1b]
          Length = 211

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 77/239 (32%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   + VS   +    +  +                    GA+   L   +
Sbjct: 2   IRVVLIDDHEMVRAGVSAFLSTQPDIEVVGEASD---------------GATGAELAIAE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  S         +    L    F    +         
Sbjct: 47  KPDVVLMDLVMEPVDGVESTKRIKASW--------KEAKILVVTSFLDDEKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T +   I   +        ++      ++     +                 LT
Sbjct: 99  MSYVLKTANANEIADAIRQTAAGNPVMAAQVTGKMLERLRHPEMTLHES---------LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++EGK++  IA  L IS  TV  ++++I+ K     R+ A+ YA ++N+V
Sbjct: 150 AREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDRTQAVVYAFQHNLV 208


>gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579]
 gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis
           BMB171]
 gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 210

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        D +LT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHD-DLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 EREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W]
 gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W]
          Length = 592

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRVLIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 514 KFDEQKETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQRALEIGII 591


>gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 213

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKERPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------MGRTAVKKEIENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209


>gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 210

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     VS   +    +  +   D                G     L    
Sbjct: 2   IKVLFVDDHEMVRIGVSAYLSSQPDIDVIAEADD---------------GTQAVELALDL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         + +  +              +    F    +         
Sbjct: 47  RPDIILMDLVMKEMDGIQATKKIIEAW--------PAAKIIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    I+  +             N  ++       + +LT
Sbjct: 99  TSYMLKTSKASEIAKAIRSTYEGQSILEPEVT-------GKIMNRMRTGQNTALHE-QLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++GK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA +N +V
Sbjct: 151 EREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIYAFQNKLV 209


>gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 77/253 (30%), Gaps = 29/253 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +VL  + +     +     +S+ +  +                    G     ++
Sbjct: 1   MKTIRVVLIEDHDLTRVGLKTALQQSEQVEVVGEAAT---------------GRQGLEVL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      +L +      + +          L   +       +   +
Sbjct: 46  KLTRPDVAIIDIGLPDIDGIELTQTFKEYLRSQKGP---NTKVLILTMHDNKDAVMGAFS 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-----------NMF 173
              + Y      + R+   + +       I       +   A               N  
Sbjct: 103 AGADSYSVKDVSIDRLMEAIQVTSEGNSWIDPVIARTVLQQAQNLPGENTNAATVTINAV 162

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +     +     LT RE+E L  I  G+++ EIA  L I+  TV  ++ SI+ K     R
Sbjct: 163 EPEYKEFLSTCPLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDR 222

Query: 234 SGAIAYAVRNNIV 246
           + A   A+R+  +
Sbjct: 223 TQAAVRALRSGWI 235


>gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 211

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      I       + Y        ++   +
Sbjct: 65  EATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHQGNANFHPKVTPAL-------MGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV+  
Sbjct: 170 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209


>gi|120555999|ref|YP_960350.1| two component LuxR family transcriptional regulator [Marinobacter
           aquaeolei VT8]
 gi|120325848|gb|ABM20163.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 219

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 65/243 (26%), Gaps = 27/243 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                 +I+L  +       +  L    D +  +               L          
Sbjct: 1   MSETPASILLIDDHPLLRQGIKQLIGMEDDMEVIGEASNAADGIRLATEL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      + +R +                 +   V     + +  
Sbjct: 51  -----EPDLILMDLNMPEMDGIEALRKLREQNVS--------SRIVMFTVSDQEDDVVAA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   L        +I         LLA    +           
Sbjct: 98  LRAGADGYLLKDMEPEDMIAQLHQAAVGKMVISDRLTT---LLAEALRSNKPQQTSRPDF 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L  I+EG ++  I   L IS  TV  ++  +++K   ++R     +AV 
Sbjct: 155 DS-LTPREKDILRLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAVE 213

Query: 243 NNI 245
             +
Sbjct: 214 EGL 216


>gi|88798765|ref|ZP_01114348.1| two-component system regulatory protein [Reinekea sp. MED297]
 gi|88778528|gb|EAR09720.1| two-component system regulatory protein [Reinekea sp. MED297]
          Length = 224

 Score =  128 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L   +  +  +            M  L               
Sbjct: 9   IKVMLVDDQNLVREGIKSLLNLAGHITIVGEAGDGEEALTVMTEL--------------- 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        V+ M     D    V+          F      ++      
Sbjct: 54  QPDVVLMDIRMPKMDGITAVKTMKEQNIDI--PVI------ILTTFDDHELVLSGIRAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +      +  +   +  +     +I       +           +S          LT
Sbjct: 106 RGFLLKDVSLEALVEAIDTVSSGDTLIQPAVTERVIKGFTELQKEGQSKVEKEPVQDPLT 165

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI+  +  S  T+ N++++I+ K   + R+ A+  A+   ++
Sbjct: 166 QREIEILRLMAGGYSNKEISRAIFKSEGTIKNHVSNILAKLGVRDRTRAVLKALELGVI 224


>gi|329939256|ref|ZP_08288592.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301485|gb|EGG45379.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 238

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 65/234 (27%), Gaps = 9/234 (3%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQ 72
                  +    +    D           +     +  + E   G     L R       
Sbjct: 7   DGGAAARTGPLRVLLADDQALLRGAFRMLLDTAEDITVVGEAGDGREAVRLARELRPDVV 66

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +           +           L+    L    + T              +  
Sbjct: 67  VMDIRMPEVDGLAATERICA------DPDLRDCRVLILTTYETDENVARALRAGAGGFVG 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +     ++       +  +A + A   +S      +   LT RE E
Sbjct: 121 KGIGAEELAEAVRTIAGGETLLSPAATRSL--VARFLATPDESTPHDSARLAVLTPRERE 178

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ ++ G ++ EIA  + +S  TV  ++   M K   + R+  +  A R  +V
Sbjct: 179 MVSLVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGLV 232


>gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
 gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1]
          Length = 240

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 82/231 (35%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           RS++  +   L  +      +   TE +G  +F  +        +    + S +P   V+
Sbjct: 10  RSEVKEKFQALTASFELKTLLQQFTESLGFDYFAFLIQHPVPFTRPRIHLHSTYPKLWVK 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +  +           +     G+ + +        R+
Sbjct: 70  RYEKQNYYAVDPVLTLCQRPGRGMAWSEEQFTDAGNLWHEAREYGLQSGFSCSAMAPNRV 129

Query: 141 RIGLMLLFPKGR---IILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLT 195
              L +   +     +   +   ++ LLA    +  +    D         + RE+E L 
Sbjct: 130 IGILSISSQQPISVQLRHAELEVKLHLLAELSLDTLERFSDDAMMVLKKAFSQRELEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKT+ EI++IL IS +TVN +  ++ ++     ++    YA    ++
Sbjct: 190 WTAEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240


>gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
 gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM
           40736]
          Length = 221

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 70/229 (30%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  + ++     +             G      VR        +D  
Sbjct: 3   IRVLIADDQMMVREGFSVLLNAMPDIEVVGEA-----VNGREAVAKVRELAPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +A ++             L    F              + +       
Sbjct: 58  MPEVNGIEATREIAAADG--------ATKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    +  +   +          +LT RE E L  I
Sbjct: 110 RQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAYGDLTERETEVLVLI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 170 AQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 218


>gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR
 gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 236

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 70/234 (29%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P   D                ++ ++   +G  +            K    +   +P   
Sbjct: 3   PGFQDAYHAFHTAQDERQLFRQIASVVRQLGFDYCCYGIRVPLPVSKPAVAIFDTYPAGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           +     S   +    ++        +              +     G++      ++   
Sbjct: 63  MEHYQASGFLEIDPTVRTGASSSDLIIWPVSIRDEAARLWSDARDFGLNIGVARSSWTAH 122

Query: 139 RIRIGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                L L      +   +          +  LA    + F    +       LT RE E
Sbjct: 123 GAFGLLTLARRADPLTAAELEQLSATTNWLANLAHALMSPFLMPKLVPESSAALTARERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 183 VLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236


>gi|297191756|ref|ZP_06909154.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151051|gb|EDY65636.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 231

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 13/221 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           +     +  + E   GA     VR        LD  +      +
Sbjct: 2   LVADDQELVRSGFAMILDAQPDIEVVAEAGDGAQAVEAVRRHSPDVALLDIRMPRMDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R ++          +     +    F +            + +         +   + 
Sbjct: 62  ACREIST---------VSACRTVMLTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVR 112

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++     ++       +              D   G+   LT RE E L  +  G ++ E
Sbjct: 113 VVARGDSLLAPSVARRLIEEYTRAVPRVPQPD---GRLESLTTRERETLLLLGRGLSNAE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S +TV  ++ +++ K A + R  A+  A  + ++
Sbjct: 170 IAAELVVSEHTVKTHVGNVLAKLALRDRIQAVICAYESGLI 210


>gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 230

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 75/243 (30%), Gaps = 21/243 (8%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+ ++ + L  +     +  + +    D +  ++          R+  +           
Sbjct: 3   EVSKIRVGLVDDQALVRTGFAMVIDSQDDMKVVLEASNGKIALERLTVV----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      +    +              P  L    F      +   
Sbjct: 52  ----PADVILMDIRMPVMDGLEATATITSKPL----PTGVSPKILILTTFEEEEYIMGAV 103

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++   +  +     +I      ++    A +A   ++ D H    
Sbjct: 104 QAGASGFLVKDAPPDQMLEAIRTIHRGDAVIGPSSTKKLVEKLAKEATAMRATDPHI--L 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  +++G T+ EIA  L ++  T+  +I  I  K   + R  A+  A   
Sbjct: 162 DGLTEREIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGHIFYKLGARDRVQAVVLAYEA 221

Query: 244 NIV 246
            +V
Sbjct: 222 GLV 224


>gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 82/241 (34%), Gaps = 24/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V + L  ED    S +S    R      +            +  L E       LLV 
Sbjct: 38  QPVRVFLADEDRHSRSVISQELMRDPRTILIGQASSYREARKGV--LAEEFD---VLLVD 92

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L + Q  D +         V  +A+S  +K                      +     
Sbjct: 93  LSLGEGQGADLLELVQLRMPNVLSIAISSSEKGDA------------------AMDAFKK 134

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y             ++ +   G  I      +I L   +Q +      +   K  +
Sbjct: 135 GVVGYLLKNSWFGSYSQAVLEVANGGASISPIVAKKI-LPKIFQYSAPNEIPLEHKKFEK 193

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++GK + EI   + IS  TV+ ++ +I RK   +TR+ A+ YAV   I
Sbjct: 194 LTDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKGI 253

Query: 246 V 246
           +
Sbjct: 254 I 254


>gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 219

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+ +      +D  +      
Sbjct: 11  LLLVEDHHIVRRGLVFFLKTRGEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPKMDGI 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +        +Y   ++         F      I       + Y        ++   +
Sbjct: 71  EATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASI 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 123 IAVHQGNANFHPKVTPAL-------MGRSAVKKEIENPFSMLTKREQEVLREIAKGRSNK 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 176 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 215


>gi|302340120|ref|YP_003805326.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637305|gb|ADK82732.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 220

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + L  +       V     RS  ++ +   D      M +  +            
Sbjct: 1   MEKICVYLVDDHPAVRDGVRSALLRSGFISIVGEADDAYRLFMDLETV------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +      DL+  + +         L     L   +++ +   +    
Sbjct: 49  ---RPEVILLDIGLPDGSGIDLIEKIRMK--------LPHVRILMLSMYNRIDYIVESLR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + +     +RI   +  +           L  I  +     N +   DV      
Sbjct: 98  NGARGFVTKETSPSRIAEAIERVHTGEYFFDGTVLDAI--VGKLLENSYNIMDVSDSAYA 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +  +++G +  ++A +L IS+ TV N+  SI +K         + YA R  
Sbjct: 156 TLTAREQEIMRLLAQGNSVRKVAQMLFISKKTVENHRTSIFKKLNINNSVELVHYATRIG 215

Query: 245 IV 246
           ++
Sbjct: 216 LI 217


>gi|260770204|ref|ZP_05879137.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP
           102972]
 gi|260615542|gb|EEX40728.1| DNA-binding response regulator LuxR family [Vibrio furnissii CIP
           102972]
          Length = 209

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +     R D L+ +  +                 G     + R  
Sbjct: 2   IKLVLADDHRLMQDGLKSRLEREDNLSILACVGT---------------GDDALDMTRKL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  S  +         + +   +  +    I       
Sbjct: 47  KPDVLLLDINMPRMNGLEVLERIQQSNLN--------TSVIMLSMHDSKDYVIRAVKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         + + +  +      +      ++              +    +D  L+
Sbjct: 99  KGYVLKDVSSDELVLAINQVAQGRSYLCPQASDKLLAQFN---------EKPAERDETLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I  G  + +IA  L IS  TV  +   I +K    + +  +  A+   +V
Sbjct: 150 KRESDVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAALVKLALEKGLV 208


>gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 595

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 83/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 350 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 408

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 409 NVVGLAEDGNQAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRVLIFT 463

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 464 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 516

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 517 KFDEQIETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 576

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 577 GVRNKEEAVQKALEIGII 594


>gi|226306620|ref|YP_002766580.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229493687|ref|ZP_04387472.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226185737|dbj|BAH33841.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229319648|gb|EEN85484.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 219

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E     ++ +    + ++ +                    GA+       
Sbjct: 2   PITVLLVDDQELMRMGLNMVLEAHEDISVIGEAGD---------------GAAAVAAAVA 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  S  +           L    F      +      
Sbjct: 47  LKPDVVLMDVRMPIVDGVKATEQILASGIE--------SRVLVMTTFDLDEHALGALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +  +     ++       +  L+ +  +           D  L
Sbjct: 99  ASGFLLKDTPPEDLVSAIRSVAAGDAVVSPKVTRRL--LSRFIVDGPAPRRDPVVLDV-L 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +S +T+ +++  I+ K   + R  A+  A    +V
Sbjct: 156 TEREREVLGHVATGLSNIEIAQQLYLSESTIKSHVGRILTKLDLRDRVQAVVLAYETGLV 215


>gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 218

 Score =  128 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 68/221 (30%), Gaps = 14/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D L     +   +S    +  + E   G     LV         +D  +      
Sbjct: 3   VLIVDDHLMLRKGVLSVLS-NTDLEVIGEASNGQEALELVPKLKPDLVLMDINMPVLDGV 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +          +      +   V     +         + Y         +   L
Sbjct: 62  EATRKLKQ--------MYPDLKVVILTVSEIDKDLFEAIKAGADGYLLKNLGPEELVSSL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    I      ++      +    ++         +L+ RE+E L   S G T  
Sbjct: 114 RAAISGEAPISSVMAAKM----LKEFRQPRANTTGKQPGQQLSPREIEVLRLASTGLTYK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L ++ +TV N++  I+ K   + RS A+ YA+R  +
Sbjct: 170 EIAAKLYVAESTVKNHMRHILEKLHLRNRSEAVGYAIRTGL 210


>gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 225

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 14/231 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V            ++ ++  +             G     +          +D 
Sbjct: 4   PVRVLLVDDQHLVRTGFRVILEVEDDIEVVGEA-----ADGQRAVSMATALRPDVVLMDV 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +          VL          F              + +      
Sbjct: 59  EMPVLDGLEATRRITADATPGGPAVL------ILTTFDRDDYLFAALRAGASGFLLKNGT 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLT 195
              +   + ++     +I       +  ++ +        D        +LT RE E L 
Sbjct: 113 PEDLIDAVRVVARGEGLIAPALTRRV--ISTFARPGAAPPDPRHDAATADLTPREREVLE 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA +L +   TV  +++ ++ K   + R  A+ +A  + +V
Sbjct: 171 LVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 221


>gi|254393192|ref|ZP_05008347.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|294811637|ref|ZP_06770280.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440178|ref|ZP_08214912.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706834|gb|EDY52646.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|294324236|gb|EFG05879.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 223

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 14/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R                ++  +  +    +        GA     V         +D 
Sbjct: 3   PIRVLIADDQTMVRQGFGFLLGAEPGIEVVGQAED-----GAEAVARVAELAPDVVLMDI 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  +              L    F              + +      
Sbjct: 58  RMPGVGGIEATRRITGAPGAT-------AKILMLTTFDLDEYVYEALRAGASGFLLKDAS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   + ++     ++       +  +A +             +   LT RE E L  
Sbjct: 111 AAELAHAVRVVAAGDALLAPAVTKRL--IAEFSRLTGAPRAPLRERVGTLTERETEVLAL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 169 IAQGLSNAEIATALVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 218


>gi|302875540|ref|YP_003844173.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307690067|ref|ZP_07632513.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302578397|gb|ADL52409.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 220

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 73/241 (30%), Gaps = 26/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  + +     +  + +  D +  +   +        +                  
Sbjct: 2   INVIIADDQKIVREGIKMILSLYDEINVIGEAENGEELINLLQNF--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +      +  + +                 +    F+             
Sbjct: 47  MADVILMDVRMPIIDGVEATKIIKERYI--------HTKVIILTTFNEDEYIFKAIKNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDF 184
           + Y         I   +  ++    ++  +   ++        N  K    +D    K  
Sbjct: 99  DGYLLKDVGSEFIINAIRSVYNGAMLLDPEVTVKVVKAFNSITNESKNSNEFDNINNKLN 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++    +++GK++ +I   L ++  TV NY+  I+ K    +R+    +  +  
Sbjct: 159 SLTPREIDVAKLVAQGKSNKDICRSLFLTEGTVKNYVTRILGKLELNSRTELAVFINQAG 218

Query: 245 I 245
           I
Sbjct: 219 I 219


>gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           thailandensis MSMB43]
          Length = 230

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 75/227 (33%), Gaps = 12/227 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L A +       +           +G  H  +V            +VS  +P + V    
Sbjct: 2   LSATLPESRDVRTLIETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYT 61

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIR 141
            S+      V +   +   P                      AG+DN             
Sbjct: 62  RSDYFAIDPVHRAAFQYSTPFSWNDIATSNLRERHLLMEAEDAGLDNGISIPLHQPLGRV 121

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISE 199
           + + L           +     LL       F+S            LT RE  CLTW++ 
Sbjct: 122 LLVSLSGTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCSPIPPSVHLTDREQMCLTWVAR 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK+S  IA +L IS+ TV+ +I + M K  T++R+ A   A R  ++
Sbjct: 182 GKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104]
 gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200]
 gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712]
 gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613]
 gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467]
          Length = 206

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D     + +   +S    +  + E   G   +            +D ++      D 
Sbjct: 2   LVDDHEMVRLGVSSYLSIQEDIEVVGEAENGKIGYEKALELRPDVILMDLVMEEMDGIDS 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            + +                 +    F    +           Y   T     I   +  
Sbjct: 62  TKAILKDW--------PEAKIIIVTSFIDDEKVYPAIEAGAAGYLLKTSTAHEIADAIRA 113

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            +   R++  +          ++     +         +LT RE E L  I++GK++ EI
Sbjct: 114 TYRGERVLEPEVT--------HKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEI 165

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L I+  TV  ++++I+ K     R+ A  YA ++ +
Sbjct: 166 ADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204


>gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 241

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 16/231 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVSSDWPFDLVRCM 90
           L   +  ++        +  + +  G SH  ++          L  ++ +  P +     
Sbjct: 10  LSTEITAMESREHCAEILRTVAQAFGLSHGSILLAPCATDVHLLPLVMETTLPMEFGHEF 69

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL------PENITPPAGMDN--------RYCSLTFD 136
              +  K+  V+++      P    +            P  M +              F 
Sbjct: 70  DRHQFVKFCPVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVVFIFP 129

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
               R+  M        + +  + E+G+LA    + +         + + L+ RE+E L 
Sbjct: 130 SLDSRLYFMRFDGDRSPLSQCEVNELGMLAMAVFDTYDRLRRTELMNVDVLSVRELEVLR 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W ++GKTS EI  IL +S +T+N Y+ + M+K     R+  +A A+R  ++
Sbjct: 190 WTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240


>gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 228

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 10/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     +  + E   G       R  L     +D  +      
Sbjct: 7   VLVVDDQSLLRGSFTLLIDTEDDLRVVGEAGTGVEAVDAARRLLPDVVLMDVRMPDMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +           L     L    F       +      + +        ++   +
Sbjct: 67  EATRRI------CGDPALSGVRVLMLTTFDLDEYVYSSLRAGASGFLLKDVPPTQLLHAI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +    A          V       +T RE E LT ++ G ++ 
Sbjct: 121 RVVANGESLLAPSVTRRL---VAEFVARPHESTVASTDLAAVTEREREVLTLVARGLSNT 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  +I  ++RK   + R+  +  A  + +V
Sbjct: 178 EIAERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGLV 219


>gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 224

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 67/228 (29%), Gaps = 15/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   D L  +I             +     G     L          +D  +
Sbjct: 6   RVIIVDDHPLFRDGLKSLIARSTKYETVGEAGS-----GEEALQLALELTPDLMTMDVSL 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +           L     L   ++  L             Y        
Sbjct: 61  PDMSGIEATRKIIQ--------ALPSVKILMLSMYQNLEYATDAFKAGARGYIVKEATSD 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R+   +  L      +      +  ++  +     K   V       L+ RE + +  ++
Sbjct: 113 RLIEAMDALSQGEHFLDGQLSGD--MVIRHLCGQGKEGSVQDQGYALLSPREQQVMRLVA 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG +S  IA  L +S  TV N+  ++M+K    +R   + YA R  ++
Sbjct: 171 EGGSSRSIAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGLI 218


>gi|89896875|ref|YP_520362.1| hypothetical protein DSY4129 [Desulfitobacterium hafniense Y51]
 gi|89336323|dbj|BAE85918.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 215

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 66/240 (27%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ + L  +     S +  +      +  +   D   +   ++  +              
Sbjct: 4   QIRLFLVDDHSVLRSGLKMILNSQKDMVVIGEADSGSAAIAKIKEI-------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  ++          +     L   +              
Sbjct: 50  -NPDIILLDISMPDMSGLQALEKLSK---------VSSAKILMLTMHADEKYLQEALKSG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +  +      +       +        +M+     +      L
Sbjct: 100 ASGYVLKQAADTELLQAIRDVARGEIYLDSSLAQNL------VKSMYSPRKDNNRSASNL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L +I+ G T+ EI   L +S  TV  + A IM K     RS  + YA+    +
Sbjct: 154 TEREKEVLRYIALGYTNKEIGESLSVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYI 213


>gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1]
 gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1]
          Length = 213

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 68/220 (30%), Gaps = 18/220 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+        +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVQTKRPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKQI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +           +S          LT RE E L  I++G+++ 
Sbjct: 117 IAVHEGNTNFHPKVTPALL---------GRSVVKKENPFSMLTKREQEVLREIAKGRSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA +L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 168 EIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207


>gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR
 gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum]
          Length = 236

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 72/234 (30%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P   D        +        + A+   +G  +            K    +   +P   
Sbjct: 3   PDFQDAYHAFRTAEDEHQLFREIAAIARQLGFDYCCYGARMPLPVSKPAVAIFDTYPAGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           ++    S        ++        +              +    AG++      ++   
Sbjct: 63  MQHYQASGFLDIDPTVRAGASSSDLIVWPVSIRDDAARLWSDARDAGLNIGVARSSWTAH 122

Query: 139 RIRIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                L L      +   +          +  LA    + F    +    +  LT RE E
Sbjct: 123 GAFGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAVLTTRERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 183 VLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236


>gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 73/245 (29%), Gaps = 28/245 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   +   ++L  +       V  L     +   +                    G   
Sbjct: 1   MN-YCEPYRVLLADDHPLARQAVLSLLEEDAIFTVVGEAR---------------HGEEA 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            LL          LD  +S     D +R +   +             +   V   + +  
Sbjct: 45  VLLSSQLKPDLVLLDINMSPMNGLDALRLIKQKQ--------PHIKVVMLTVSDNVADLF 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y     D     + L  L         +   ++      Q           
Sbjct: 97  IAVQFGAQGYLLKNMDPDEWLLYLHALLDDNS----EVARKMADRIMSQFRSPVKGTEQD 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E +  +S+G  + +IA+ L IS NTV N++ +I+ K   + R    AYA
Sbjct: 153 PSPSVLTARETEIVAHVSKGYNNKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYA 212

Query: 241 VRNNI 245
           V++ +
Sbjct: 213 VKHQL 217


>gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 209

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 20/223 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V         L   +                E +       V+ +      +D  +   
Sbjct: 3   LVEDHHIVRRGLVFFLKTRGEFEIIGEAENGEEALHF-----VQKEKPDVVLMDVSMPKM 57

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  +        +Y   ++         F      I       + Y        ++ 
Sbjct: 58  DGIEATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLV 109

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++ +              +                       LT RE E L  I++G+
Sbjct: 110 ASIIAVHQGNANFHPKVTPAL-------MGRSAVKKEIENPFSMLTKREQEVLREIAKGR 162

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 163 SNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|284034471|ref|YP_003384402.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283813764|gb|ADB35603.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 242

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +  T  +  + E   G     L R        +D  +     
Sbjct: 17  RVVLADDQALLRGAFRTLLDSTDDIAVVGEAGDGEEAVALTRRTHPDVVVMDIQMPGMDG 76

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L+    L    + T            + +     D   +   
Sbjct: 77  LTATAQICA------DPDLRASRVLILTTYETDEYVAQALRAGASGFIGKGIDADGLIDA 130

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +  +A + A    +      +   LT RE E +  ++ G ++
Sbjct: 131 VRTIADGDALLSPAATRSL--VARFLATPVDTAPRDVERLVALTPREREMVALVATGLSN 188

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  + +S  TV  ++   M K   + R+  +A A R  +
Sbjct: 189 LEIADRMYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGL 230


>gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
 gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29]
          Length = 592

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 347 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLSTLLDRYEDI 405

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 406 NVVGLAEDGDQAIDLCGRLQPHVVLMDLDMQQMDGVEATKKIKQQ-----WPHIRVLIFT 460

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 461 T---FQDTKQALDSLRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKI----FE 513

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           Q +            +ELT RE+E L  +++G   + IA  L +S  TV NY +S   K 
Sbjct: 514 QFDEQNETPQSKATAYELTAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKL 573

Query: 229 ATKTRSGAIAYAVRNNIV 246
             + +  A+  A+   I+
Sbjct: 574 GVRNKEEAVQKALEIGII 591


>gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 211

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      V+        +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVQTKRPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKRI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +              +                       LT RE E L  I++G+++ 
Sbjct: 117 IAVHEGNTNFHPKVTPAL-------LGRSVVKKEKENPFSMLTKREQEVLREIAQGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV  ++++++ K     R+ A  YAV+  ++
Sbjct: 170 EIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGVI 211


>gi|229134173|ref|ZP_04262991.1| Response regulator [Bacillus cereus BDRD-ST196]
 gi|228649281|gb|EEL05298.1| Response regulator [Bacillus cereus BDRD-ST196]
          Length = 597

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 95/258 (36%), Gaps = 15/258 (5%)

Query: 1   MNFEIQQV--NIVLNREDEQRTSFVSHLPTRSDLL---ARMIPLDCTVSWTMRMYALTEY 55
           M   ++Q    + ++   EQ T  + ++P + +L+    R++ +D     T  +  + E 
Sbjct: 343 MKERLEQFHGTLSVHSSAEQGTFIICNIPLQIELVHDTIRLLVVDDQALITNSLEQVLEQ 402

Query: 56  ------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
                 VG +   L   +  ++ + D ++      ++    AL E  + +  ++      
Sbjct: 403 HANFTVVGKAQDGLKALEQCEQLQPDIVLMDIQMPEMNGIEALLEMKQRWPNMKIVLMTT 462

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
              F    +  T        Y   +     +   L L++  G  I +     +      Q
Sbjct: 463 ---FEDSLQAATALEHGAEGYMLKSIHPQEMNEVLKLIYNGGTWIDQSAATRVFEEMKRQ 519

Query: 170 ANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
               +          + LT RE+E L  +S G     IAV L +S  T+ NY +++  K 
Sbjct: 520 REQLEKIRLTKQTYPYGLTKREMEILEHLSNGLRYKSIAVKLLLSEGTIRNYCSNLYSKL 579

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R  AI  A   NI+
Sbjct: 580 GVNNREEAIKMARTENIL 597


>gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
 gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum
           DSM 15272]
          Length = 220

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 32/241 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  + E     VS + +    L  +       +                      
Sbjct: 8   RIRVLLVDDQELFRRGVSMVLSADPDLDLVEVGSGDEALEQVAE---------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      LD  +      ++   +          V      +         +      G 
Sbjct: 52  NPPDVVLLDVRMPERSGVEVCAAIKA--------VSPTTGIIMLTASDEESDLYESIKGG 103

Query: 127 DNRYCSLTFDV-ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
            + Y         ++   + L+     +I          +A    + F            
Sbjct: 104 ASGYLLKDGSTYDQVGEAVRLVASGQSLISP-------TMATKLLDEFVQISRTPAPAAS 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  +++G ++ EIA  L IS NTV N+I +I+ K   K+R  A  YAVR+ +
Sbjct: 157 LTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRNILEKLQMKSRMEAAMYAVRSRL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|291300052|ref|YP_003511330.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569272|gb|ADD42237.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 66/222 (29%), Gaps = 9/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           ++    +  + E   G     L R        +D  +      
Sbjct: 5   VLIADDQAMVRAGFAALLNAQSDIDVVGEAANGLLALELSRQHHPDVVLMDVRMPEMDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +    + +Y         L    F              + +         +   +
Sbjct: 65  EATRRLLGGNETEYRP-----KVLMLTTFDIDDYIYEALRIGASGFLLKDSPPDDLTAAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +  +A +     K           LT RE E LT I+ G ++ 
Sbjct: 120 RVIAAGEALLAPSVTRRL--IAEFARTRPK-ATATSATLASLTDRETEILTLIARGLSNR 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++  TV  ++  I  K   + R+ A+  A    +V
Sbjct: 177 EIAGRLVVAEQTVKTHVGRIFAKLGLRDRAQAVVCAYETGLV 218


>gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8]
 gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8]
          Length = 215

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G                +D  +     
Sbjct: 3   RVLLADDHALFRQGLKSLLEAEGDFRVVGEAKDGWEAMRHALETKPDVILMDIQMPGLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +             +   +   ++                Y     D   +   
Sbjct: 63  VQATQAILKEW--------PQAKVIMLTMYRQDAYVFEAVKAGARGYLLKDVDARELVDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKT 202
           +  +     ++  +       LA +    F++          EL+ REV+ L  +++G T
Sbjct: 115 IRRVHAGEVLLDAE-------LAGHIIQDFRAKKEASQPLHAELSEREVQILRLVAQGYT 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L +S  TV N ++ I +K     R+ A  YA+R  +
Sbjct: 168 NQEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210


>gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 220

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + + V G      V         +D  +     
Sbjct: 3   RVLIADDQQMVRQGFTVLLGLQPDIEVVGQAVDGLDAVARVAELAPDVVLMDIRMPELGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F              + +        ++   
Sbjct: 63  IEATRRITT--------ATPHIKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A +     +       +  +LT RE E L  I+ G ++
Sbjct: 115 VRVVAAGDAMLAPGITRRL--IAEFSRLAPEPRTPLKERVGDLTERETEVLALIARGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIAV L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 173 AEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 215


>gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 218

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 20/228 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +       + +  ++  D T        +     G     L    +     +D  +
Sbjct: 7   RVLIIDDSDLAREGIRTILSSDSTFEVVAEGQS-----GEEALELTEKWMPDIILMDIQM 61

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +           ++            L + +         Y     +  
Sbjct: 62  PGMGGLEATKQVKDKF-----PYVKIVMVTVSDDIAHLFDALKR---GAQGYLLKNLNPE 113

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                L  +      + R+       LA      F   +     +  LT RE E L  ++
Sbjct: 114 SWHEYLKAIAVDEAPMSRE-------LAFRILKEFSQQEKPDPGNSPLTAREREILGRVA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG ++ +I+V L IS NTV N++ +I++K   + R     YA     +
Sbjct: 167 EGLSNRDISVALCISENTVKNHLKNILQKLHLENRVQLTRYAFEQGWM 214


>gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus]
 gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 217

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    D +  +                    G   +  V   
Sbjct: 1   MKIVIADDHAVVRTGFSMILNFQDDMEVVDTAAD---------------GVEAYQKVMQH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +    P      +A S+  + +   +        ++              
Sbjct: 46  QPDVLIMDLSM----PPGESGLIATSKIVESFPDTKIL---ILTMYDDEEYLFHVLRNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +  ++     I       +  +  +  N  +  +        L+
Sbjct: 99  KGYILKNAPDEQLISAVRTVYRGDTYIDPKMTTSL--VNEFVNNTGQDANSTNDPFRILS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + EIA  L +S  TV  +   IM+K   K++   + YA++  ++
Sbjct: 157 KRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKKKLL 215


>gi|219683473|ref|YP_002469856.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621123|gb|ACL29280.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|289178826|gb|ADC86072.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 234

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 74/251 (29%), Gaps = 29/251 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ +V+  + E   +  + +      +  +            +  L            
Sbjct: 4   ASRIRMVIADDQELVRAGFTMVINSQPDMQVVGQASDGTQAVQLVERL------------ 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + S         +       + +  Q    +    F      ++   
Sbjct: 52  ---HPDIVLMDVRMPSMDGLAATAQITS-----HADGEQHTRVIILTTFDLDEYVMSAIN 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---------NMFKS 175
              + +     +   +   +  +     II       +                     +
Sbjct: 104 AGASGFLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGRQQSEVA 163

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    +   LT RE E L  I+ G ++ EIA  L IS  TV  ++A I++K   + R  
Sbjct: 164 AEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRVQ 223

Query: 236 AIAYAVRNNIV 246
           A+ +A  N++V
Sbjct: 224 AVVFAYENHLV 234


>gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 242

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 77/235 (32%), Gaps = 17/235 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPFDL 86
              D +  +  L    S    M       G  +F       L  E   +++++   P   
Sbjct: 7   RAFDFVETVRQLPDVASILDAMSRTLGQHGFDYFCSSYVAPLSTESPREAVLAERLPAGF 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCS 132
           +   + ++   +   L+       P                           GM +    
Sbjct: 67  LDMYSEAQYVWHDPALRYCRTTLQPFRWFREAPYDPEREPRAVELVRRARDFGMVDGVVI 126

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-FKSYDVHWGKDFELTGREV 191
                A     +         +    L  + L+A Y  +   K   +       L+ RE 
Sbjct: 127 PVISPAGRTGQVWF-GGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLRER 185

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT  + G++SDEIA  L I+  TV  +I S  +K    TR+ A+  A+R+ I+
Sbjct: 186 EVLTLAAVGRSSDEIADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRII 240


>gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 215

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 27/239 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +       +S      + +  +   +       ++  L              
Sbjct: 2   PIRILLVDDHPMVLKGLSLFLGTREEMEIVGEANNGAEALEKVKQL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +  R +          +      +    F      +      
Sbjct: 48  -RPDVVLMDLMMPVMDGVEATRRIKE--------IHPDVKVVVLTSFSDQDHVLPAIRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     +   +   +         +       +      ++  F+  D        L
Sbjct: 99  AEGYQLKEIEAEELVATIRAAHQGKTQLHPQAAGHLVQQFTSESTGFREQDGLE----VL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I+EG ++ EIA  L I+  TV  +++ I+ K   + R+ A  +A++   
Sbjct: 155 TPREQEVLRLITEGMSNKEIAANLVIAEKTVKTHVSGILNKLDLQDRTQAAIHAMKQGW 213


>gi|254385641|ref|ZP_05000964.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194344509|gb|EDX25475.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 224

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGLEALEVLRATKVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   E        + P  +    F       +      + +       A +   
Sbjct: 64  VEATRRICEPE--------EHPKVIILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ E LT RE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRRL--LDRFAPMLPTTTSEPRNKEIERLTEREREVMLLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|294813229|ref|ZP_06771872.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441661|ref|ZP_08216395.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294325828|gb|EFG07471.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +         ++    M  + E   GA    L+R        +D  +      
Sbjct: 5   VMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAIELLRSTAVDVVLMDVRMPRLDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +              P  L    F       +      + +         +   +
Sbjct: 65  EATRRICAQP----DP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
             +     ++       +  L  +   +         K+ + LT RE E +  +++G ++
Sbjct: 117 RSVHSGDAVVAPSTTRRL--LDRFSPMLPSGGPEPRNKEVDRLTEREREVMMLVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 175 GEIAGRLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 217


>gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 226

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 70/230 (30%), Gaps = 14/230 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D     + L   +     +  + E   GA     V         +D  +   
Sbjct: 1   MTTVLLVDDQALIRMGLRLVIDSEPDLEVVGEASDGAVALDQVAALAPDVVLMDIRMPGV 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +                 L    F              + +   +     + 
Sbjct: 61  DGIEATRRVVAEH--------PAVRVLVLTTFDVDEYAFAALRAGASGFLLKSARPEELA 112

Query: 142 IGLMLLFPKGRIILRDRLWE-IGLLAAYQA----NMFKSYDVHWGKDFELTGREVECLTW 196
             +  +     ++    +   + L A +            D       +LT RE + L  
Sbjct: 113 DAIRTIASGSSVVAPRVVRRMLDLFAPHLPGGDDASPARPDEVAPVLRDLTPRETDVLRA 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG ++ EIA  L +S  TV  ++ +++ K   + R  A+  A  + +V
Sbjct: 173 VAEGLSNAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAYESGLV 222


>gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
 gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4]
 gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17]
 gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALAL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  KPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        + +LT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-DLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 EREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 228

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 69/225 (30%), Gaps = 11/225 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  + E   G     L+         +D  + +   
Sbjct: 11  RVVLVDDQTMIRQGLGYVIQMQADMEVIGEASDGVEAVELIGSLAPDVVLMDVQMPNKSG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + + L           R   L    F      +         Y     D   +   
Sbjct: 71  IEATKEIMLQH--------PRTKVLILTTFDNHNYVVEGIRAGAVGYMLKDADSQEMLDL 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGK 201
           +        +       +    A                    ELT RE++ L  I++G 
Sbjct: 123 IRRAHQGEALFHTVTAAKALAEALQGQRETPDSTTTSQSVLLDELTDRELDVLQQIADGY 182

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +D+IA  L IS  TV  ++  I++K   + R+ A+A A+R+ IV
Sbjct: 183 RNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQAVAKALRHKIV 227


>gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 225

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 9/229 (3%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSI 77
            T     +    D       L   +     +  + +   GA+   L          +D  
Sbjct: 1   MTQGTVRVVVADDQPLVRAGLSTVIDTEPGLEVVGQAGDGATAVALAHELRPDVVCMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +   +      VL          F              + +     + 
Sbjct: 61  MPGTDGITATRALCGPDVTDPIPVL------VLTTFDVDEYLFGALEAGASGFLLKDAEP 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +     ++       +  L                    LT RE++ L  +
Sbjct: 115 ATLVEAVRSVAAGHGMLANALTRRV--LREVVTRRRTQPVTAARASELLTPRELDILLLL 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G +++EIA  L +  +TV +++A  M K   ++R  A+ +A +N IV
Sbjct: 173 AQGMSNEEIARELYLEVSTVKSHLARAMPKLGVRSRLQAVVWAYQNGIV 221


>gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     M  + E   GA    L          +D  +      
Sbjct: 4   IVLADDQALVRAGFRALLDAQPGMTVVAEAADGAQAVRLAAEHEPDVVLMDIRMPGMDGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R M              P  +    F              + +     + A +   +
Sbjct: 64  TATREMP-----------PGPRIIILTTFELDEYVFEALRNGASGFLVKDTEPAELIQAV 112

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +  +A Y +     +         LT RE E L+ +  G T+D
Sbjct: 113 RVVADGDALLSPGVTRRL--IAEYASRAKPPHPSQD--LGMLTDREREVLSLVGTGMTND 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 169 EIAGKLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGLV 210


>gi|291614280|ref|YP_003524437.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584392|gb|ADE12050.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 219

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 71/244 (29%), Gaps = 33/244 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q+  I+L  +       +  L +    +  +   D                G     L  
Sbjct: 3   QKQRILLVEDHTLLRQGICSLLSSDPNIEVVGEADN---------------GKDAIRLAG 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      + +R +      K Y  ++        V             
Sbjct: 48  SLSPTLILMDLSMPGTNGTESIREI-----KKRYPAIKIM---VLTVHKAEEYIREALHA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
             + Y         + + +  +      +  D       +A    N +            
Sbjct: 100 GSDGYVLKHATHDELILAIKSVLNGKTYLSPD-------IAEKVVNGYLDGGKGINPASA 152

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  I+EG+ +  IA  L +S  TV  + +++MRK      +   +YA+ 
Sbjct: 153 WDTLTLREREVLKLIAEGQGNKHIASYLCVSVKTVEKHRSNLMRKLNLHNAAVLTSYAIE 212

Query: 243 NNIV 246
             +V
Sbjct: 213 KGMV 216


>gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803]
 gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803]
          Length = 557

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       D L R++ +D        +  L +             G     
Sbjct: 325 EEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAID 384

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 385 LCGRLQPHVILMDLDMQHMDGIEATKKIKQQ-----WPHIRVLIFTT---FQDTEQALES 436

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 437 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAT 492

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+ 
Sbjct: 493 AYELTAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALE 552

Query: 243 NNIV 246
             I+
Sbjct: 553 IGII 556


>gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 227

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 62/230 (26%), Gaps = 16/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           + +  ++ L   +             G     LV         +D 
Sbjct: 9   PARVVVADDQTVVREGIVMLLGLLPGIEVVGAAG-----DGHEAVKLVAELNPDVVLMDL 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +                 +    +                Y +    
Sbjct: 64  RMPRCDGVEATRRIRAEHPGTQ--------VVVLTTYADDESLFPALRAGARGYLTKDAG 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +  +      +       +       +   +           LT RE E L  
Sbjct: 116 GDEIVRAVESVLSGDAGLSPSIQRRL---LERLSEPERGQAASSEVPDGLTAREAEVLVL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+EG ++ EIA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 173 IAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 222


>gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 226

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 12/227 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D           +     +  + E   G      V     +   +D  +   
Sbjct: 1   MTTVLLVDDQALLRSGFRLVIESEPDLRVVGEAADGRVALDQVAALAPEVVLMDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +                 L    F              + +   T     + 
Sbjct: 61  DGIEATRRIVA--------AHPGSRVLVLTTFDVDDLAFAALRAGASGFLLKTARPDELV 112

Query: 142 IGLMLLFPKGRIILRDRLWE-IGLLAAYQ--ANMFKSYDVHWGKDFELTGREVECLTWIS 198
             +  +     ++    L   + L A +        + D    +   LT RE++ L  ++
Sbjct: 113 DAIRTVAAGTSVVAPRVLRRMLDLFAPHLPTGGRAPAPDGQDPRLAALTPRELDVLRLVA 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++ EIA  L +S  TV  ++ ++  K   + R  A+  A    +
Sbjct: 173 EGASNVEIAAELVVSEATVKTHVGNVFAKLGARDRVQAVIIAYECGL 219


>gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 131

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           ++      +       + Y        ++   + +L+    +I      ++         
Sbjct: 1   MYEHDEYLMDALQAGADGYLLKDSSSNQVVAAIRMLYRGDSVIHPRMTKKLIT------- 53

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +        + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K
Sbjct: 54  YHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVK 113

Query: 232 TRSGAIAYAVRNNIV 246
           +RS A+ YAVRN +V
Sbjct: 114 SRSQAVIYAVRNQLV 128


>gi|182437898|ref|YP_001825617.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778534|ref|ZP_08237799.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466414|dbj|BAG20934.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658867|gb|EGE43713.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 226

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 16/226 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   GA    ++R        +D  +     
Sbjct: 6   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAIEILRSTAVDVVLMDVRMPRLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   +          P  L    F       +      + +       A +   
Sbjct: 66  VEATRRICAQQ----DP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEG 200
           +  +     ++       +      + +          K+     LT RE E +  +++G
Sbjct: 118 IRSVHSGDAVVAPSTTRRL----LDRFSPMLPSGDKEPKNKHVGKLTEREREVMLLVAQG 173

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 LSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 219


>gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 79/244 (32%), Gaps = 24/244 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                V I+L  +DE     +     +   L  +   +                G +   
Sbjct: 1   MASNPVKILLVEDDELFRLGLRVRLQQEAGLEIIAEAED---------------GETALD 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L++ +      LD  +      +  + +          +L   +    P+          
Sbjct: 46  LIKQNSLDVVLLDVGLPGLGGIEACKQIKQQNPQL--PILVLTSHSQKPLI------SKL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  YC       ++ + L  +             EI        +     +     
Sbjct: 98  IEAGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIRSSIESSQSQPPEQNFPKS- 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LTGRE+E L  +++GKT+ EIA +L I+  TV  ++ +I+ K     R  A+  A++
Sbjct: 157 DHPLTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVALQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 KRLI 220


>gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 238

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 65/234 (27%), Gaps = 11/234 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
             +   R                ++ ++  +             G     + R       
Sbjct: 12  GSDRPIRVLLADDHHLVRTGFRVILEIEDDIEVVGEA-----ADGHRAVSMTRALRPDVV 66

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +  R +   +      VL          F              + +  
Sbjct: 67  LMDVEMPDVDGLEATRRIRAEQDQAGPAVL------ILTTFDRDDYLFAALRAGASGFLL 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   + ++     ++  +    +    A                 +LT RE E
Sbjct: 121 KNGTPEALIEAIRVVARGDGLLAPEITRRVIATFARPGGPSTGGTDPQAALRDLTPRERE 180

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G ++ EIA  L +   TV ++++ ++ K   + R  A+ +A    +V
Sbjct: 181 VLVLVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAVVFAYEQGVV 234


>gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 207

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 9/199 (4%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV-------LQRPTE 107
             G +     R        +D  +         R +  +               +  P  
Sbjct: 6   ADGRAGVAAARTARPDVVLMDVRMPELDGLAATREILAARPPASEPAPSSGPEGVSGPRV 65

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L    F              + +       A +   + ++     ++       +  +A 
Sbjct: 66  LMLTTFDVDDYVYEALRSGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVTRRL--IAD 123

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           + A           +  ELT RE E L  I++G ++ EIA  L ++  TV  +I  I+ K
Sbjct: 124 FAARHPAPRKGTGHRPKELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAK 183

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A+ +A  + +V
Sbjct: 184 LRLRDRAQAVIFAYESGLV 202


>gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 209

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        + E   G      VR +      +D  +      
Sbjct: 5   LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +      +Y   ++         F      +       + Y        ++   +
Sbjct: 65  EATKQI-----KQYDETIKILILSS---FSEQDYVLPALEAGADGYQLKEVQPEQLVASI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + ++             I           +S          LT RE E L  I++G+++ 
Sbjct: 117 IAIYEGNANFHPKVTPAIL---------GRSAVKKENPFSMLTKREQEVLQEIAKGRSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 168 EIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207


>gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911]
 gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     VS   +    +  +   D                G +   L    
Sbjct: 2   IKVLFVDDHEMVRIGVSSYLSAQPDIEVIGEADN---------------GRTAIDLALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +  +              +    F    +         
Sbjct: 47  RPDIILMDLVMKEMDGIEATRGIIEAW--------PEAKVIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   F    ++  +   ++ +                    ELT
Sbjct: 99  SSYMLKTSKASEIADAVRATFHGQSVLEPEVTGKMMV--------KMRQKQTVLPHEELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  ++EGKT+ EIA  L I+  TV  ++++I+ K   + R+ A+ YA ++++
Sbjct: 151 SREMEILLLMTEGKTNQEIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHSL 208


>gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 232

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 14/233 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
           +S    +    D     +     +     +  + E   G +              +D  +
Sbjct: 4   SSTPVRVLIVDDQALVRMGFRMVLDAEPGIEVVGEAADGRAAVERTGALAPDIVLMDVRM 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D    +                 +    F              + +        
Sbjct: 64  PGMDGIDATAEIVARH--------PATRVIVLTTFDLDEYAFAGLRAGASGFLVKDTRPE 115

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAA-----YQANMFKSYDVHWGKDFELTGREVEC 193
            +   +  +      I       +  L                     +   LT RE+E 
Sbjct: 116 HLMEAIRAVADGDAAISPRVTRRMIELLGPTMPATGGAAGTGEGAADPRLRPLTARELEV 175

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LT ++EG T+ EIA  L +S +TV  ++  ++ K   + R  A+  A    +V
Sbjct: 176 LTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILAYDCGLV 228


>gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 219

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 73/242 (30%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ I +  + E     +  L  R + L  +                    G     +V
Sbjct: 1   MEKIKIFIVDDHEVVRLGLQGLFARYEELEIVGEAAS---------------GEEAVQVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D  R +           +     +    F    E      
Sbjct: 46  PVIKPDVVLLDVRLQGIHGADTCRLITS--------AVPGIKVVMLSSFAEPEEVQAAFT 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +      I  +   ++              +    +  
Sbjct: 98  AGASAYVLKNITSGNVIKAIKAVMQGESFIDPEITEQV--------MSLIRGEKAASQIS 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  + EGKT+ EI   L +S  TV N+++ I+ K     RS A A+  R +
Sbjct: 150 GLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKLGVSNRSQAAAFMARRS 209

Query: 245 IV 246
           ++
Sbjct: 210 VI 211


>gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 62/222 (27%), Gaps = 8/222 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   GA    L R        +D  +     
Sbjct: 4   RVLLADDQALLRATFRILIDSCEDMTVVGEASDGAEALELTRAHHPDIVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F T            + +         +  G
Sbjct: 64  LAATSAICA------DPELAATRVLILTTFETEDYVAQALRAGASGFLGKDVTADTLLAG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++       +                   +  ELTGRE E +   +EG+++
Sbjct: 118 LRTVASGEALLSPAATRTLITNFLMSPAPDAHL-APPERLSELTGREREVMGLAAEGRSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA IL +S  TV  +I   M K   + R+  +  A +  +
Sbjct: 177 TEIAEILTLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTGL 218


>gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 219

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +  L      L  +            +  L               
Sbjct: 2   ITVVIVDDQAMVRQGLGALLNAQPDLHVVGEAANGAEAVREVSRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D    +             RP  L    F              
Sbjct: 47  KPDVVLMDVRMPEVNGLDAAATILA------SPSPDRPHVLMLTTFDVDDYVYEALRIGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +        +          +  ELT
Sbjct: 101 SGFMLKDAPSEELARAVRVVAAGDSLLAPSVTKRLIAEVTKSRSGVPKDSP---RLRELT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G ++ EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 158 PRELEVLELIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQAVVFAYEHGVV 216


>gi|315647821|ref|ZP_07900922.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276467|gb|EFU39810.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 222

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 14/228 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   ++    +  + E   G      V         +D  +     
Sbjct: 3   RLLIADDHAMVRRGLQVFLATQPDIEMVGEAANGEETLERVVHLKPDVVLMDLNMPVLNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +   +             +    F      +         Y     +   +   
Sbjct: 63  IDTTARLKKEQ--------PHIKVIVLTSFVDYDHVLPAIRAGARGYLLKDIEPEELVAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWIS 198
           +  +F     +  D    +            S      ++       LT RE E L  I+
Sbjct: 115 IRRVFQGMVELHPDAAGLLMTHVTLPEGAESSSGPGRQEEAVQELDKLTRREQEVLQLIA 174

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  + EI+  L I+  TV  +++ ++ K     R+ A  YA+++ IV
Sbjct: 175 SGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYALKHGIV 222


>gi|262402371|ref|ZP_06078932.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586]
 gi|262351153|gb|EEZ00286.1| DNA-binding response regulator LuxR family [Vibrio sp. RC586]
          Length = 212

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 2   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 57  DVSMPIMNGIEATRLIKEE--------VPNTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 109 ISALKMVQAIKTVNQGATYFCESTTTTL---------FSQEIIPSANKPNPLSRREEAIL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 160 RMVAQGCSSKKIASLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 211


>gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 249

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 69/249 (27%), Gaps = 31/249 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V ++L  +     +    +    D +  +                    G     L   
Sbjct: 18  RVRVLLVDDQALVRAGFRVILESEDGIEVVGEAAD---------------GEEGVRLAGA 62

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +           ++    L    F       T     
Sbjct: 63  LAPDVICMDVQMPRVDGLEATRRIVA------DPAIR-AGVLMLTTFDREDYLFTALDAG 115

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY---------QANMFKSYD 177
            + +   +     +   + ++     ++  D    +                        
Sbjct: 116 ASGFVLKSASPESLVEAVHVISRGDALLSPDVTRRVIDRFGRGSGASDDDEATPTPAPTI 175

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE+E L  ++EG  + EIA  L +   TV  +++ ++ K   + R  A+
Sbjct: 176 PTDPRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAV 235

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 236 VFAYERGIV 244


>gi|255535277|ref|YP_003095648.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341473|gb|ACU07586.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 226

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 26/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN    ++ I++  + +     +  L    D ++ +            +           
Sbjct: 3   MNKASDKIRILIVDDHQLMIEGLKSLLEDEDSISFVAGATTMKETLDFLAE--------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      ++ + +              P  +   +   +    
Sbjct: 54  ------HEIDVILMDVNMPDSSGIEITKKVRAL--------YPHPKVIALTMHEDISIIS 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y     ++  +   L  +   GR +       I        ++    D   
Sbjct: 100 KMIKAGASGYVLKRTNMHEVIDALKTVHQNGRYLSTSVQNVIMDNLMLPEDLM---DAKD 156

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+GRE+E L  I++  ++++I   L IS  TV  +  +I  KT TK+  G I YA
Sbjct: 157 DNKPVLSGRELEVLKLIAKEFSNEQIGEQLFISERTVEAHRRNIFMKTKTKSIVGLIKYA 216

Query: 241 VRNNIV 246
           +   IV
Sbjct: 217 ITEGIV 222


>gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273]
 gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272]
 gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273]
          Length = 592

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 77/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       D L R++ +D        +  L +             G     
Sbjct: 360 EEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAID 419

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 420 LCGRLQPHVILMDLDMQHMDGIEATKKIKQQ-----WPHIRVLIFTT---FQDTEQALES 471

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAT 527

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  AI  A+ 
Sbjct: 528 AYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAILKALE 587

Query: 243 NNIV 246
             I+
Sbjct: 588 IGII 591


>gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 266

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       V HL    + +  +      +    ++  L               
Sbjct: 41  ITVLLVDDHALFREGVHHLLGLEEDIQVVGEAGDGLEALQKIRQL--------------- 85

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++       L R +                 +   ++    + +       
Sbjct: 86  QPDIVLMDILMPIVDGVTLTRQVVQE--------FPTVGVIMLTMYRQSQQMLQAMKNGA 137

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   +  ++ +G  I  +    I                       LT
Sbjct: 138 RGYILKSASAHEVAETIRTVYNEGLSIQPEMTRAIVGE----FRRLADTTSSNQGTDLLT 193

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+E + +++ G ++ EIA  L  S  TV NY++ I +K   + R+    +A+R  ++
Sbjct: 194 EKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSIIFQKLHLRDRTQVAIFALRQGLL 252


>gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           SK119]
 gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 207

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 75/226 (33%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L+  +S    +     +     F+  L   ++     LD ++ +
Sbjct: 1   MASIVLIDDHHIVRQGLEFLISTVEGLDIQASFSDGEAFIKYLNENNIPDLVLLDLVMPN 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + V     +              L    +      ++      + Y     +  ++
Sbjct: 61  MNGIE-VTHYIKTYYPYI-------KVLVLTSYVDDEYVMSAINEGADGYEIKDVEPQKL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    +II           A    +          K   L+ RE+E L  + +G
Sbjct: 113 IATITKVLNNEKIIHP--------KAKNVIDAMHEKPHFNNK---LSKREMEVLKEMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ +IA  L +S  TV  +++ I  K     R+ A  YA+ N ++
Sbjct: 162 KTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIENKLI 207


>gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 210

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGKAEN---------------GRKGSELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        + ELT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 ERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|167465455|ref|ZP_02330544.1| two-component response regulator LiaR [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 220

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +         L          +    +  + E            +
Sbjct: 5   IRVMIVDDHDMVRMGLKTYIMLDPELEVCAEASDGKAAVALLEQMAE-----------EE 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D ++ +    +  R +  +     Y  ++         F    + +       
Sbjct: 54  RPQVILMDLMMPNMNGIETTRLVTET-----YPSIKVVM---LTSFLEEDKVLKAIEAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T    ++  G+         +  +         +               +  LT
Sbjct: 106 TSYVLKTVSSEQLIEGIHKASQGIPEMNPEV--------SLALTRGLRQRNAQPDEEGLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++GKT+ +IA  L IS  TV  ++++++ K     R+    YA R   V
Sbjct: 158 IREKEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 216


>gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13]
          Length = 210

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     V+   +    +  +   D                G+    L    
Sbjct: 2   IRVLFVDDHEMVRIGVTAYLSAQPDIEVVAEADD---------------GSVAIELALEH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  KPDIILMDLVMKEMDGIEATRRIMEQW--------PEAKIIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    I+  +   ++                      ELT
Sbjct: 99  TSYMLKTSKASEIANAVRSTYKGQSILEPEVAGKM--------MQKMRRKTEILPHEELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++GKT+ EIA  L I+  TV  ++++I+ K   + R+ A+ YA ++++V
Sbjct: 151 NREMEILLLMTQGKTNQEIADELFIALKTVKVHVSNILAKLQVQDRTQAVIYAFKHSLV 209


>gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 228

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 73/250 (29%), Gaps = 26/250 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + QQ+ I +  + E   + V            +  L        +   +        
Sbjct: 1   MNEQEQQIRIAIVDDHEMFRAGV------------IATLQPHFDIVGQAADV-----EGS 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             ++         LD  V           +  S       V    +    P      +  
Sbjct: 44  VAMIAQTKPDVVLLDVHVPGGEGGGGAEILVKSRAYSPNTVFLALSVSDSP-----QDVG 98

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSY 176
           +        Y + T     +   +  +     +         L      +        S 
Sbjct: 99  SVIRAGAQGYVTKTISGDDLISSIKQVHEGYAVFSPKLAGFVLSAFQNGSPAGMGGSASG 158

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+  
Sbjct: 159 PIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTEL 218

Query: 237 IAYAVRNNIV 246
             +A    IV
Sbjct: 219 TRWAADRRIV 228


>gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
 gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2]
          Length = 592

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 77/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       D L R++ +D        +  L +             G     
Sbjct: 360 EEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAID 419

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 420 LCGRLQPHVILMDLDMQHMDGIEATKKIKQQ-----WPHIRVLIFTT---FQDTEQALES 471

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAA 527

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K   + +  A+  A+ 
Sbjct: 528 AYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQMALE 587

Query: 243 NNIV 246
             I+
Sbjct: 588 IGII 591


>gi|220932804|ref|YP_002509712.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
 gi|219994114|gb|ACL70717.1| two component transcriptional regulator, LuxR family
           [Halothermothrix orenii H 168]
          Length = 209

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 19/220 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D    +  L   ++    +  + T   G      +     +   +D  +      ++
Sbjct: 6   LVDDHPFVLQGLKAYLNTREGIEIVGTSGNGEKAIKEIAKLNPEVAVVDLRLPGLNGIEV 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +                 +    F+   E I         Y        ++   +  
Sbjct: 66  TREIKKKNPGTE--------VIILSSFNKEDEVIEAIDAGALSYVMKDSRPEKLVEAIKA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 ++      +I           K       K   LT RE E L  +  G ++ +I
Sbjct: 118 ARRGEPVLTPGVAKKI----------MKRAARKGRKTEPLTPREKEVLACLVRGNSNRDI 167

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++++I++K   K R+ A+  A+ NN+V
Sbjct: 168 AKTLCISETTVKTHVSNILKKLDVKDRTQAVIKAIENNLV 207


>gi|312198290|ref|YP_004018351.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229626|gb|ADP82481.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 248

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V  T  +  + E   G +     R        +D  +     
Sbjct: 27  RVLIADDEGLVRAGFRALVEATPDLTVVAEAADGVAAVRESRRLRPDVVLMDIRMPVMNG 86

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V   P  L    F                +         +   
Sbjct: 87  LEATRLIAA------DAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDTQPENLLAA 140

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +  +AA+            G    LT RE   LT I+ G ++
Sbjct: 141 IRTVAAGDALLAPGVTRRL--IAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANGYSN 198

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  ++  ++ K A + R+  +  A  + +V
Sbjct: 199 AEIAQALYVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESGLV 241


>gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI]
 gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
 gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 210

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        + ELT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 ERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|331699942|ref|YP_004336181.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954631|gb|AEA28328.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 221

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 64/229 (27%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       +  A ++     +         T   G +   +          +D  
Sbjct: 2   IRVLVVDDQAMVREGFAALLDAQPDMEVVG-----TAGDGRAALPVAATRHPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 +    F          A   + +       
Sbjct: 57  MPEMDGLEAARLLLAQPDPP--------KVVVLTTFDLDDYIFDALAAGASGFLLKHAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++     ++  +    +            +      +   LT RE E L  +
Sbjct: 109 TDLLHAVRVVAAGEALLAPEVTRRLIAHFVAARPDPAAAGPRPDRLAPLTDRETEVLGLV 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L ++  TV  +++ I  K   + R+ A+  A    +V
Sbjct: 169 ARGLSNTEIADALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYECGLV 217


>gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
 gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149]
          Length = 221

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E + GA    ++         +D  + +   
Sbjct: 4   RVVIVDDQALVRAGFRMVLDSQPDLTVVGEAIDGADALRVLDRVEADVVVMDIRMPTMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +          VL          F T  +         + +         +   
Sbjct: 64  VEATRRICADRPGDRPRVL------VLTTFDTEADAFAALQAGASGFLLKNVPPEELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +       A  F        +  +LT RE E L  +++G ++
Sbjct: 118 IRVVAEGDSVVAPSITRRL---LDRFAGQFGPGPAADPRLAQLTEREREVLLLVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  + ++  TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 175 AEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLAYESGLV 217


>gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 210

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GKKGSELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        + ELT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 ERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|260914572|ref|ZP_05921040.1| nitrate/nitrite response regulator protein NarL [Pasteurella
           dagmatis ATCC 43325]
 gi|260631363|gb|EEX49546.1| nitrate/nitrite response regulator protein NarL [Pasteurella
           dagmatis ATCC 43325]
          Length = 209

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ +++  +       +  L    +  + +                    G+    L  
Sbjct: 3   EKMKVLIIDDHPLMRRGIKQLIELDESFSVVGDAGN---------------GSEGINLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +     D           L   V  +  +  T    
Sbjct: 48  QTQPDLIILDLNMKGLSGLDTLKALRSEGID--------ARILILTVSDSKNDIFTLIDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   +  +     I+                N            + 
Sbjct: 100 GADGYLLKDTEPDTLLGQIKRISQGEVILSDS-----------IKNALIERQSATDPIYS 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A      +
Sbjct: 149 LTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEH 206


>gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 215

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 17/223 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + L  ++     +             G     L          +D  
Sbjct: 2   IRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAEN-----GKVAVELALKLKPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +A  + +           L    F                Y       
Sbjct: 57  MPIMDGVAAMRSLAEQQPEI--------KVLVLTTFDDDEYITQAMESGAKGYLLKDTPS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  ++     +      ++        +     +   G   +LT RE+E L  I
Sbjct: 109 DELAQAIRAVYQGYTQLGPGLFEKV----MAAKSKPSRDEPLPGYLQDLTPRELEVLRLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +G ++ EIA  L IS  TV N+++SI+ +   + R+     A
Sbjct: 165 GKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 207


>gi|256827097|ref|YP_003151056.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583240|gb|ACU94374.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 215

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    M  + E   G   + LV         LD  +    P
Sbjct: 3   DVAIADDHAVVRQGFAFIINSQCDMRVVGEAADGKEAYDLVARVEPHVLLLDISM----P 58

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A       +   +    +   +F           G    Y         +   
Sbjct: 59  PGENGLIACERISCDFPSTRI---IILTMFEETDYLFYTLRGGAAGYVLKNSSTEVLLGA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I          L+        S         EL+ RE E  + +++G T+
Sbjct: 116 IRKVATGETYIEP---NMAQALSGKLHGQ--SGVAEKNPYHELSSREFEIFSLLAQGYTN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E A  L IS  TV  + + I  K    +R+  +  A++ +++
Sbjct: 171 KEAADKLFISVKTVETHRSKIYAKLGVNSRAELVHLALKYHLL 213


>gi|225175237|ref|ZP_03729233.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169413|gb|EEG78211.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 215

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 16/216 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G     L +        +D  +     
Sbjct: 3   RVLIVDDHAVVRFGLKSLIELYDNFEVVGECARGEDVLPLTKATRPDVVVMDIRMPGMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + +  +        +     +    +                Y     D A++   
Sbjct: 63  IEACQEVVAN--------VPETKVVMLTSYGDDEAVYASIMAGAMGYILKKTDSAKLVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++     ++         +  K+          LT  E + L  I+EGKT+
Sbjct: 115 IERVAAGESLLDPQVTFK-------VLSQMKNIAAGKQSGKTLTEMEKKVLLLIAEGKTN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  + ++  TV NY++ I  K     R+ A AY
Sbjct: 168 KQIAEEIFLAEKTVRNYVSKIFLKLNLSNRAAAAAY 203


>gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae]
 gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae
           pv. syringae B728a]
          Length = 247

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 23/231 (9%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                              +G   +        +  K   ++ S++P   ++    S   
Sbjct: 19  AAPAPLRQLIEDFENDLHRIGDFTYAYFSSPKTRTVKP--VILSNYPDSWLKSYIASNYH 76

Query: 97  KYYNVLQRPTELFCPVFH------------TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
               +++       P F                   +    + +       D + +   L
Sbjct: 77  LIDPIIKHAWHSITPFFWREARHAIQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAAL 136

Query: 145 MLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLT 195
            L   +        +RD+  +I +      +                  +L+ RE+  L 
Sbjct: 137 SLCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTKTQAPHELFPQPTRCKLSSREIGVLK 196

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 197 WVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 216

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 18/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V          + ++  +  +             GA     V         +D
Sbjct: 3   DPVRVLLVDDQELVRTGFSMILATESDIEVVGEARD-----GAEAVQRVAELAPDVVLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +  +              L    F              + +     
Sbjct: 58  VQMPGTDGISATEQIVAAGGAP--------KVLILTTFDDDAHLFAALQAGASGFLLKNC 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + L      ++  +    +        +  ++     G+  ELT RE + L 
Sbjct: 110 PPDDLVQAIRLAAEGHSLLAPEVTQRVI-----ARSTSRAAPEADGRLDELTERERDVLV 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +S  TV ++++ I+ K   + R  A+  A  N ++
Sbjct: 165 LLARGHSNAEIAGELYVSAATVKSHVSHILAKLEVRDRVQAVILAFENGLM 215


>gi|302531265|ref|ZP_07283607.1| response regulator [Streptomyces sp. AA4]
 gi|302440160|gb|EFL11976.1| response regulator [Streptomyces sp. AA4]
          Length = 218

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 61/228 (26%), Gaps = 17/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++     +             GA    +          +D  
Sbjct: 2   IRVVVVDDQELMRVGFRMVLGAQADIDVVGEAG-----DGAQAVRMAAELRPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  + +  +              L    F           G  + +       
Sbjct: 57  MPVLDGVEATKQIVAAGT---------ARVLVMTTFDLDEYVYAALQGGASGFLLKDTQP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +     ++       +  L  +  +           D  LT RE E L  I
Sbjct: 108 DYLVSALRSVADGDAVMSPSVTRRL--LDRFVGSGGSEMRDPAELDV-LTDREREVLVLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +
Sbjct: 165 AKGMSNVEIAETLFLSEATVKTHVGRILSKLDLRDRVQAVVLAYETGL 212


>gi|239933574|ref|ZP_04690527.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291441947|ref|ZP_06581337.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344842|gb|EFE71798.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 231

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D                 M  + E   G     L +        +D  +     
Sbjct: 4   RVLLADDQALLRGTFRMLFDSADDMETVGEASNGREAVELAKAQRPDVILMDIRMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  +E       L     L    F              + +         +   
Sbjct: 64  LVATRLIGEAE------DLSAVKVLILTTFEDDEYVAEALRAGASGFLGKGARPEELLGA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++        GL+  + A           +   LT RE + L  ++ G ++
Sbjct: 118 VRTVAAGDALLSPSATR--GLIRRFLAQPEPCTAAVHERLECLTRRERDVLGLVALGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  T   ++   M K A + R+  +  A +  +V
Sbjct: 176 EEIAERLFVSPLTAKTHVNRAMTKLAVRDRAQLVVVAYQCGVV 218


>gi|302535180|ref|ZP_07287522.1| two component system response regulator [Streptomyces sp. C]
 gi|302444075|gb|EFL15891.1| two component system response regulator [Streptomyces sp. C]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 71/224 (31%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGNGLEALEVLRATAVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   E        Q P  +    F       +      + +       A +   
Sbjct: 64  VEATRRICEPE--------QHPKVIILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ E LT RE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRRL--LDRFAPMLPTTAAEPENKEIERLTDREREVMLLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 211

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 30/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +       +       D    +   +                G      V+ 
Sbjct: 2   KIKLLLAEDHHIVRRGLVFYLKTRDEFEIIGEAEN---------------GEEALYFVKK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  + +       + +       Y   ++         F      +      
Sbjct: 47  EKPDVVLMDVSMPNMDGIQATKRIKE-----YDETIKILMLSS---FSEQDYVLPALEAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y        ++   ++ +              +                       L
Sbjct: 99  ADGYQLKEVQPEQLVASIIAVHEGNANFHPKVTPAL-------LGRPAVKKEKENPFAML 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE E L  I++G+++ EIA  L I+  TV  ++++++ K     R+ A  YAV++
Sbjct: 152 TKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKH 208


>gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 230

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 70/245 (28%), Gaps = 24/245 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E   +N++L  +          +    + L+                      GA    
Sbjct: 2   IENPAINVLLVDDQPLLRMGFRLILEGEEDLSIAGEASD---------------GAEAVR 46

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L R        +D  +      +  R +A +              +    F         
Sbjct: 47  LARELNPDVVLMDVRMPVLDGIEATRAIAAAGSS--------ARIIILTTFDVDEYAFAG 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +       + +   + ++     ++       +       A +          
Sbjct: 99  LQAGASAFLLKDVAPSELIQAVRVVASGDAVVAPRVTQRLLETYVRGAELPVRPAPAPDP 158

Query: 183 D-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA 
Sbjct: 159 LLADLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAY 218

Query: 242 RNNIV 246
              +V
Sbjct: 219 ETGLV 223


>gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 66/243 (27%), Gaps = 18/243 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + + +  + +   +  S +      L  +       S    +  L            
Sbjct: 4   QPDIKVAIVDDQQLLRAGFSMVIGSQPDLTVVAEAGDGRSALDTLRNL------------ 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +         +       +    F      +    
Sbjct: 52  ---DVDVVLMDIRMPELDGLAATAQLVEHWTRTRPDTAP--RIIILTTFDLDEYALEAIR 106

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKD 183
              + +         +   +  ++    +I        +G +                  
Sbjct: 107 AGASGFLLKDAPPEEMLNAIRTVYSGDAVIAPSTTKRLLGRMITPLPTETLESSPQASTI 166

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + +  I++GK++ EIA  L ++  TV  ++  I++K   + R   +  A  N
Sbjct: 167 ASLTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVGRILQKFGARDRVQIVVAAYEN 226

Query: 244 NIV 246
            +V
Sbjct: 227 GLV 229


>gi|314930861|gb|EFS94692.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
          Length = 218

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 65/232 (28%), Gaps = 15/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R   V            +I  +  +             G     ++R        +
Sbjct: 2   PDPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASN-----GFEALDVLRRMPVDVALM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +  S  D           L    F              + +    
Sbjct: 57  DIRMPQMDGVEATRRITASPLD--------TKVLILTTFDLDEYVYAALKAGASGFLLKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +     ++       +  L      +         +   LT RE E L
Sbjct: 109 ARPTELLSAIRNVADGDAVVAPSATRRL--LDHVVPTLPNDPKAADKRLSVLTDREKEVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    ++
Sbjct: 167 VEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL 218


>gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22]
 gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   G     LVR        +D  +     
Sbjct: 4   RVLLADDQALLRATFRILVDSCPDMEVVAEAADGREAVDLVRVHRPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  +        L     L    F              + +         +  G
Sbjct: 64  ------LTATSVICADEELADTRVLILTTFEIDEYVAQALRSGASGFLGKDVTADLLLDG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +                   +   LT RE E ++  +EG ++
Sbjct: 118 IRTVAAGDTLLSPAATRTLITRFLAAPAPGSRLTTP-ERLTTLTSREREVMSLAAEGSSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L +S  TV  ++   M K   + R+  +  A ++ +V
Sbjct: 177 DEIAEKLYVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSGLV 219


>gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 70/223 (31%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + +   GA    L R +      +D  +     
Sbjct: 8   RVLLADDQTLVRAAFAMLVESARDMEVVAQAGTGAEAVELARSERADLVVMDIRMPELDG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A        + L     L    + T    +       + +       A +   
Sbjct: 68  IEATRLIAA------DDDLAGVKVLVLTTYDTDEHIMEALRAGASGFLVKDTRPADLLAA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +  +A   +          G    LT RE + LT ++ G  +
Sbjct: 122 IRTVAAGESLLSPGPTSRL--IARVLSAPQVPAANGAGGPDVLTDRERQVLTLVARGLNN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 180 TEIAESLGLSPLTAKTHVSRIMSKLCARDRAQLVIVAYESGLV 222


>gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 213

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 17/221 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA               +D  +     
Sbjct: 6   RVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELRPDVILMDVKMPGVDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +R +   +             L    F      +         Y     D   +   
Sbjct: 66  IDALRRLRELDHP--------ARVLVVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +           +      G+   LT RE E L  I++G+++
Sbjct: 118 IRSVHAGHVLLQPEVAGALL--------AQEDTGPAQGRAGTLTEREREVLGLIADGRSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 170 REIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210


>gi|282853097|ref|ZP_06262434.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582550|gb|EFB87930.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922742|gb|EFS86573.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965826|gb|EFT09925.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982968|gb|EFT27060.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091273|gb|EFT63249.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094508|gb|EFT66484.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315105228|gb|EFT77204.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329003|gb|EGE70763.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 218

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +     S    L    D +  +      +     +  +             
Sbjct: 3   DPIRVILVDDQSLVRSGFRMLIESEDDMEVVAEASNGLEALDVLRRM------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  + +  S  D           L    F            
Sbjct: 50  --PVDVALMDIRMPQMDGVEATQRITASPLD--------TKVLILTTFDLDEYVYAALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++       +  L      +         +   
Sbjct: 100 GASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRL--LDHVVPTLPNDPKAADKRLSV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    +
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 210

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVXVTSFLDDEKLYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    ++      ++        +  +        + ELT
Sbjct: 99  TSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 ERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 208


>gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis
           KT71]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 11/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G       R        +D  +     
Sbjct: 4   RVLVVDDQALVRRGFAMVLEHQGDIEVVAEASTGLEAITAARVHAPDVILMDIRMPELDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +     D           +    F              + +         +   
Sbjct: 64  LEATARILNESGDS-------TRVIVLTTFDPDEYIYRALRAGASGFLLKDIPPEELVAA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  D    +       A           +   LTGRE E L  + +G  +
Sbjct: 117 VRTVADGRALLGPDITRRLI---EQFARQGGGSSALAERLERLTGREQEALRCVGDGMNN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  LGI   TV  +++S++ K   + R+ A+ +A  + +
Sbjct: 174 QEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYESGL 215


>gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 228

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 10/225 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA      R        +D  +     
Sbjct: 4   RVLLADDQALLRGTFKMLIDSCDDLEVVAEAADGAQAVDRAREHRPDVIVMDVRMPG--- 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              V  +  +E       L     L    F              + +         +   
Sbjct: 61  ---VDGLTATETICADPDLTGTRVLILTTFENDEHVARALRAGASGFLGKYVTTDALLEA 117

Query: 144 LMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +  +     ++       +    LA    N         G   +LT RE E +   ++GK
Sbjct: 118 IRTVATGESLLSPGATKALISQFLATPPPNTAAPQPTTPG-IRDLTNREREAMKLAADGK 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L +S  TV  +I   M K   + R+  +  A +N +V
Sbjct: 177 SNDEIARELNLSALTVRTHIQRAMTKLGARDRAQLVVLAYKNGLV 221


>gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 217

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   +     M  + E   G     L          +D  +    
Sbjct: 3   TRVLVVDDHEVVRRGLMTLIDLEETMETVGEASCGQDGIDLAVSLAPDVVLMDVQLPDVD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +  S              +                   + +         +  
Sbjct: 63  GITAARTIIEST---------SCKVVMLTALADEEVVYGGLRAGVSGFLLKVAPSHELIE 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + L       +  D       +   +        +       LT RE E L  ++EG++
Sbjct: 114 AVSLAAQGKAHLHADVTG----IVIDRFTSAPETRLRDDLVGALTDREREVLVALAEGQS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV ++++ I  KT  + R+ A+  A  + ++
Sbjct: 170 NTEIAESLHLSETTVKSHVSHIFTKTGARDRAQAVGIAYESGLI 213


>gi|262203128|ref|YP_003274336.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262086475|gb|ACY22443.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 67/245 (27%), Gaps = 25/245 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  +        S L      ++ +                    GA    +   
Sbjct: 2   PITVVIADDQAMVRQGFSALLAAQPDISVLGDASD---------------GAEAVEVCAR 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ------RPTELFCPVFHTLPENI 120
                  +D  +           +   +                   L    F       
Sbjct: 47  ARPDVVLMDVRMPRRDGLWAAEQVLRVQGPGNGAGASGSDTSGVTRVLMLTTFDIDDYVY 106

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +         +   + ++     ++       +      +    K      
Sbjct: 107 EALRIGASGFMLKDAPADELVRAVRVVAAGEALLAPSITRRLITEVTSRRTRRKPNPALA 166

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E L  ++EGK++ EI   L ++  TV  ++++++ K   + R+ A+ +A
Sbjct: 167 S----LTPREREVLDLVAEGKSNAEIGAELFVAEQTVKTHVSNVLAKLGLRDRAQAVVFA 222

Query: 241 VRNNI 245
             N +
Sbjct: 223 YENGL 227


>gi|261408873|ref|YP_003245114.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329928799|ref|ZP_08282638.1| response regulator protein VraR [Paenibacillus sp. HGF5]
 gi|261285336|gb|ACX67307.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328937442|gb|EGG33863.1| response regulator protein VraR [Paenibacillus sp. HGF5]
          Length = 217

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I+L  + +     +    +       +            +    E          
Sbjct: 1   MGTIRILLADDHDMVRMGLKTYLSLDPGFEVIGEAANGQEVVDMLRNGEEA--------- 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D      +D ++      +  R +     D+          +    F      +    
Sbjct: 52  --DRPDLILMDLMMPVMNGAETTRAVMSEFPDQ--------KIVILTSFLEDELVVECIE 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T     +   L   F    ++ +D    +               +  G + 
Sbjct: 102 AGAVSYVLKTVSADELIYALQGAFRGMPVMTKDVSEALT--------RGIRRHMVNGDES 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EGK++ EI   L IS  TV  ++++++ K   + R+    YA R  
Sbjct: 154 GLTEREKEVLLLIAEGKSNKEIGEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAHRKG 213

Query: 245 IV 246
            V
Sbjct: 214 WV 215


>gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 215

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L  +     S +  L    + L  +                    G     L + 
Sbjct: 5   KFTLLLIDDHPMLRSGLKQLIALDERLQVVAEAGN---------------GIDGLTLAQL 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      D +  +          +      +   V     + I+     
Sbjct: 50  HDPDLILLDLNMPGLNGLDTLTQLRE--------IALSGRVVVFSVSDNEEDVISALKRG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-E 185
            + Y     +   +   L        ++       +           +       +D  +
Sbjct: 102 ADGYLLKDMEPEDLLKALHQAAAGQIVLSEALTPIL-------VARLREAQPGQTRDINQ 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  IS+G T+  IA  L IS +TV  ++  +++K   K+R  A  +A++N +
Sbjct: 155 LTRREREILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKMNLKSRLEAAVWALQNGL 214


>gi|290963132|ref|YP_003494314.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652658|emb|CBG75791.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   G    LL R +  +   +D  +     
Sbjct: 4   RVLLADDQALLRGTFRLLIDAQPDMEVVGEAANGREAVLLARSERAEVVVMDIRMPEVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           L     L    F      +       + +     + A +   
Sbjct: 64  IEATRLIGQ------DEDLAGVKVLVLTTFEEDELVVEALRAGASGFLGKGVEPAHLLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L+     ++        GL+A   A       V   +   LT RE E LT +  G ++
Sbjct: 118 VRLVAAGEALLSPAATK--GLIARVLAAPSPGDLVDPRRLATLTPREREVLTLVGSGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L ++  TV  +    M K   + R+  +  A    +V
Sbjct: 176 DEIAERLFVTPVTVKTHANRAMTKLGARDRAQLVVIAYETGLV 218


>gi|256380987|ref|YP_003104647.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925290|gb|ACU40801.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E        +    + ++ +      +        L               
Sbjct: 2   IQVLLVDDQELMRMGFRMVLNAQEDISVVGEAGDGLDAVHMAEQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  +              L    F      ++      
Sbjct: 47  RPDVVLMDVRMPVLDGVEATKRITEAGT---------ARVLVMTTFDMDEYALSALRSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   L  +     ++       +      +                LT
Sbjct: 98  SGFLLKDTPPADLVSALRAVASGDAVVSPSVTKRLLGRFLGEGGGTLRDASVLDA---LT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 155 EREREVLVLIAKGMSNTEIARKLFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGLV 213


>gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 215

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 15/218 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    +    +  + E   G     ++         +D  +        +
Sbjct: 6   ADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAI 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           +                   +    +      I         Y     +   +   L  +
Sbjct: 66  KKAIQQ--------FPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +    +  +        +M   +D    K ++LT RE + LT I+ GK++ EIA
Sbjct: 118 HGGEYKLSTAIMPHV------LTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 172 AALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|333026466|ref|ZP_08454530.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746318|gb|EGJ76759.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 212

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 71/213 (33%), Gaps = 8/213 (3%)

Query: 35  RMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
                   ++    +  + E   GA    L R        +D  +      +  R +   
Sbjct: 2   VRAGFAALLAAQSDIDVVGEAPDGAQGVELSRRTHPDVVLMDVRMPEMDGLEAARRLLAP 61

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                  V  RP  L    F              + +       A +   + ++     +
Sbjct: 62  PPG----VTHRPRVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDAL 117

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +       +  +A +             +   LT RE E LT ++ G+++ EIA  L ++
Sbjct: 118 LAPSVTRRL--IADFARQRPAPGKPAL-RLKALTERETEVLTLVARGRSNAEIAESLVLA 174

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  +++ ++ K   + R+ A+ +A  + +V
Sbjct: 175 EQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 207


>gi|317488844|ref|ZP_07947374.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316911918|gb|EFV33497.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 228

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 69/242 (28%), Gaps = 22/242 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++V +++  + +   S    +    D +  +                    G     L  
Sbjct: 3   ERVRVLVADDQDLVRSGFKLILMSYDGIDVVGEARD---------------GHEAVELAS 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +           L+    L    F          A 
Sbjct: 48  RLHPDVVLMDIRMPRMNGIEATRAIR------DDAALENVHVLILTTFDLDEYVYDALAA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDF 184
             + +     +   I   + ++     +I       +     A +               
Sbjct: 102 GASGFLLKDAEPDEIASAVRVVAQGDALIEPSITRRLIETFVAARPASLGGAAAVAAGLR 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G T+DEI   L IS  TV  ++A IM K     R+  +  A    
Sbjct: 162 TLTDREREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
 gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216]
          Length = 216

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 76/242 (31%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   I+L  +     S +  L  R D +  +        +   + A             
Sbjct: 1   MELCRIILVDDHSLFRSGMRGLLDRYDGIRVVGEASTGEEFLAMLPAT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +        E             +   +F           
Sbjct: 49  ---EADVVFMDFAMPGMNGAETTEKALALE--------PGLKVITLSMFGDENYYSRMVQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +      +  +   +  +   G     + L  +        + ++      G D 
Sbjct: 98  AGAKGFLMKDSPMDEVLRAIETVAAGGTYFCEEVLRSLASRMQTAVSGYE------GSDE 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  +  G ++ EIA  L IS+ TV+ + A+I+ KT  K  +  + YAVR+ 
Sbjct: 152 RLSTREIEILVCVCRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAVRHG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 211

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 11/218 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D           +     +  + E   G +   L          +D  +         R
Sbjct: 3   DDQAMIRAGFVTIIDAQADLEVVGECGDGRAAVDLAHELRPDVVVMDVRMPILDGIGATR 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A  + +           L    F+             + +       A++  G+  + 
Sbjct: 63  LLAGPDVE------APTKVLIVTTFNLDEYVYEALRAGASGFLLKDARPAQLLQGIRTVA 116

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  +   ++       A+  +           LT RE++ L  I++G ++ EIA 
Sbjct: 117 AGTSLLAPEVTRQL---VGRYASRIRPPQRAQEGSA-LTPRELQVLRLIADGLSNVEIAA 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV  Y++ ++ K   + R  A+ YA R+ +V
Sbjct: 173 TLSLSPETVKTYVSRLLTKLDLRDRVQAVVYAYRHGLV 210


>gi|257069626|ref|YP_003155881.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256560444|gb|ACU86291.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 222

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 62/227 (27%), Gaps = 15/227 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +         LA ++  D  +    +        GA    LV+        +D  +
Sbjct: 3   RVGLIDDDSLVRAGLAMILGADPGIEVVGQ-----GDDGAEAVTLVQKHRPDVLLMDVRM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    + ++                +    F              + +        
Sbjct: 58  PKLDGIAATKAVSDLPSPP--------KIIMLTTFDMDEYVFQALEAGASGFLLKDTPPQ 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   + ++     ++         +L+ +      S         +LT RE E L  + 
Sbjct: 110 ELARAVHVVAGGDAMLSPTITRR--MLSHFSEANPGSRQDRHPGLEQLTDRETEVLGAVG 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G ++ +I + L +S  TV  +++ I  K     R      A    +
Sbjct: 168 AGLSNAQIGMRLFMSEATVKAHVSKIFAKLDCTNRVQIAIIAHEAGL 214


>gi|291438083|ref|ZP_06577473.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340978|gb|EFE67934.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 235

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 68/224 (30%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 15  RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALEVLRSTAVDVVLMDVRMPKLDG 74

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F       +      + +         +   
Sbjct: 75  VETTRRICAD----TDP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAA 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ E LT RE E +  +++G +
Sbjct: 127 IRAVHSGDAVVAPSTTRRL--LDRFAPMLPGTGKQPAHKELERLTEREREVMVLVAQGLS 184

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 185 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 228


>gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
 gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like [Bradyrhizobium sp. ORS278]
          Length = 242

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              D +  +     + S   +   +   +G   +++       +    +I+++ WP +  
Sbjct: 9   RALDYVDAIEASKTSASVITQFEKMICDLGFHAYIMAGVPAPGQSLQQTILANGWPREWF 68

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLT 134
              A  +  +   + +       P                           ++  +C   
Sbjct: 69  EMYAREQFHRCDPIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFRLNEGFCVPI 128

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVE 192
                    +  +  +   +  D    + L++ +  +  ++            L+  E E
Sbjct: 129 HYDDA-VGAVS-IAGEHPNLAPDARGALHLISIFTHSRLRALARATAGNPGRRLSRIEAE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+W + GKT+ E A ILG+S   V  ++    RK ATK ++  +A A+ N 
Sbjct: 187 VLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNG 238


>gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 247

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 23/231 (9%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                              +G   +        +  K   ++ S++P   ++    S   
Sbjct: 19  AAPAPLRQLIEDFENDLHRIGDFTYAYFSSPKTRTVKP--VILSNYPDSWLKSYIASNYH 76

Query: 97  KYYNVLQRPTELFCPVFH------------TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
               +++       P F                   +    + +       D + +   L
Sbjct: 77  LIDPIIKHAWHSITPFFWREARHAIQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAAL 136

Query: 145 MLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLT 195
            L   +        +RD+  +I +      +                  +L+ RE+  L 
Sbjct: 137 SLCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTRTQAPHELFPQPTRCKLSSREIGVLK 196

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W++ GK   EIA I  IS  TV  +++++  K   +T   A+  A+   +V
Sbjct: 197 WVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAINMGMV 247


>gi|319950310|ref|ZP_08024229.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
 gi|319436002|gb|EFV91203.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
          Length = 250

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 15/240 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
           + ++E R   V  +    D           +     +  + +   GA+   + R      
Sbjct: 16  HTDEEGRGGGVLRVLVVDDQALMRSGFSMMLGVEPDIDVVGDAADGATAIEMSRRLRPDV 75

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           +                 L    F              + + 
Sbjct: 76  VLMDVQMPGTDGIAATEIITGEHL---------AKVLILTTFDRDDYLFDALRAGASGFL 126

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFEL 186
               D   +  G+  +     ++  +    +    A                   +   L
Sbjct: 127 LKNSDPDDLVDGIRAVGHGHALLAPEVTRRVIERLAAPPPADDAPDAGRPGPRASELAGL 186

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV  +++S + K   + R  A+  A    +V
Sbjct: 187 TARETEVLRLVARGLSNAEIADELVVGEATVKTHVSSCLAKLHLRDRVQAVVLAYEVGLV 246


>gi|300932860|ref|ZP_07148116.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 252

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 83/261 (31%), Gaps = 40/261 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + +   +  S + T  D +A                      GA    L   +
Sbjct: 2   ISVGLVDDQQLVRAGFSMVLTSQDDIAVSWEAAD---------------GAQACELAASE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +       + + L E             +    F +    +       
Sbjct: 47  PVDIILMDVQMPTMDGIAATQRI-LDEVAPTGPAGDPTRVVVLTTFDSDNYVLGAVTAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
           + +     D   +   +  +     +I      ++  +   +A   +       K  E  
Sbjct: 106 SGFLLKDVDPEELIKAVRTVGESAAVISPAATAKL--MRHLRAEGAEEGQNVASKSKEDG 163

Query: 186 --------------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                               LT RE E L  ++ G ++ EIA  L IS  TV  ++  ++
Sbjct: 164 GEPRDIIKPSLDDDLGLVDPLTPREREILCLVATGHSNQEIAEELFISLPTVKTHVGRVL 223

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            KT ++ R  A+ +A+++++V
Sbjct: 224 TKTGSRDRVHAVLFALKHHLV 244


>gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 79/248 (31%), Gaps = 32/248 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E +++ ++L  + E     ++ +    + +  +                    G   
Sbjct: 1   MEPEERKIRVLLVDDHEMVRIGLAAVLGTEEDMEVVGEAAD---------------GEEG 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          +D ++      +  R +           L     +    +    +  
Sbjct: 46  VRLAMEYQPDVVLMDLVMEPIDGIETSRRILER--------LPDCKIIVLTSYVDDDKIY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   T   A I   +        ++          +AA      +  D   
Sbjct: 98  PALEAGAFSYLLKTSRAAEIAQAIRAAVQGQSVLE-------AQVAAKVMARVRRPDGQN 150

Query: 181 GKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +    +LT RE E L  ++EG ++ E+A  L I   TV  ++ +I+ K   + R+ A+ 
Sbjct: 151 ERPLHEQLTDREREVLLLLAEGYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVI 210

Query: 239 YAVRNNIV 246
           YA ++ +V
Sbjct: 211 YAYKHGLV 218


>gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica
           T6c]
 gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica
           T6c]
          Length = 248

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 75/236 (31%), Gaps = 20/236 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +LL  +       +         + +    +LL              V S++P   +   
Sbjct: 9   ELLESVDESSSIDALKETCERFCQLIDIPFYLLGVIGQTSSYSPTIRVISNYPEKWLEFY 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT--------------LPENITPPAGMDNRYCSLTFD 136
               + +   V++   E   P+                 L        G+ N        
Sbjct: 69  FKESEQQNDPVVKYIFEKQSPIRWDKLVEYQDFSSTKGLLVFEKAAAYGLYNGLSIPIRS 128

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDF---ELTGRE 190
            +       +   +     R            A +    +   ++    +    ELT RE
Sbjct: 129 TSENIAVFSVAIDERSDANRVLDNAQMFCHTFATHLFERYVLLEISASDETDRRELTKRE 188

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +ECL W  EGKT+ EI+ I+ +S  TV  ++ +   K     R  A+A A++  I+
Sbjct: 189 LECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVALAIKKGII 244


>gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 17/223 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + L  ++     +             G     L          +D  
Sbjct: 3   IRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAEN-----GKVAVELALKLKPDVVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +A  + +           L    F                Y       
Sbjct: 58  MPIMDGVAAMRSLAEQQPEI--------KVLVLTTFDDDEYITQAMESGAKGYLLKDTPS 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  ++     +    L+E  + A Y        +   G   +LT RE+E L  I
Sbjct: 110 DELAQAIRAVYQGYTQLGPG-LFEKVMAAKY---KPSRDEPLPGYLQDLTPRELEVLRLI 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +G ++ EIA  L IS  TV N+++SI+ +   + R+     A
Sbjct: 166 GKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 208


>gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 10/224 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     ++ + E   GA     VR      Q++D  V    
Sbjct: 28  TRILLADDHALVRRGVRLILDGEPDLWVVGEAGDGAEAIEQVRRRAGTPQEVDLAVLDVA 87

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              +    A  E  + Y  L+        +                 Y   +     +  
Sbjct: 88  MPRMTGLQAARELSRMYPRLRIL---ILTMHDNEQYLFEALKAGAAGYVLKSLADRDLVQ 144

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      +          ++    +  +        +  LT RE E L  ++EG +
Sbjct: 145 ACRAAVRGEPFLYPGA------ISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHS 198

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EIA  L IS  TV  + A+I+ K   K R     YA+R  ++
Sbjct: 199 SREIADTLFISVKTVERHRANILAKLGMKDRLELTRYAIRTGLI 242


>gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 14/233 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R D  R   V       + +A ++     +    +  +     GA    +V        
Sbjct: 3   ARADAVRIVLVDDQVLLREGIATILGAQPGLEVVGQAGS-----GAEALDVVAGTQPDVV 57

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +  R +    +            L    F+         A   + +  
Sbjct: 58  CMDVEMPGMDGIEATRRIVADPRS-------HARVLVLTTFNRDDYLHAALAAGASGFLL 110

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            T    ++   +  +     ++  +      ++    A               LT RE+ 
Sbjct: 111 KTSRPDQLAAAVRSVAAGDALLSPEVTR--AVIERAVAREAGPPPAPSPAAQALTERELV 168

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  ++ G  +DEIA  L + R TV  ++++++ K   + R  A+AYA R+ +
Sbjct: 169 VLRLLARGLNNDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYAYRHGL 221


>gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 214

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 63/211 (29%), Gaps = 15/211 (7%)

Query: 37  IPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + E   G     +V         +D  +      +  R +     
Sbjct: 16  AGLVALLRQAPGLEVVGEAGNGQEALDVVEATKPDVVLMDMQMPVMNGVEATRQIRAR-- 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       L    +                Y        ++  G+  +     ++ 
Sbjct: 74  ------FPDVEVLVLTTYDDDELIWGGIQAGAKGYLLKDAPPQQLLEGIETVARGQSLLS 127

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            +   ++  + +                  LT RE E L  I+ G  + EIA  L IS N
Sbjct: 128 PEIAAKLVQVISQ------GGPARQEGAEGLTERETEILRLIASGAANKEIAAALFISEN 181

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  +I+++ +K   + R+ A+  A+    +
Sbjct: 182 TVKTHISNLFQKLGARDRTEAVTKALARGWL 212


>gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    L          +D  +     
Sbjct: 3   RVLIADDQALIRGGFRSLLDAEDDVEVVAEAADGAEAVRLAAETRPDVVLMDIRMPKLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 +    F              + +     + A +   
Sbjct: 63  LEATRRIVA------DPRASGAHIVVVTTFELDEYVAEAIRAGASGFLVKDTEPAELVRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++       +    A  A   ++     G D  LT RE E L  ++EG ++
Sbjct: 117 VRVAAAGDALLSPTVTRRL---LAQVAESTRAVKAVPGLD-HLTDREREVLVTVAEGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L +S +TV  +++  M K A + R+  +  A  + +V
Sbjct: 173 DEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLVVAAYESGLV 215


>gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 238

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            ++   C  S   +       +G  +F                +   +P +       ++
Sbjct: 12  EILSATCKKSLFEQTAYHVRQLGFKNFAY--RHQISGAASSRCMLDGFPTEWRLRYDAAD 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGL 144
                 V+Q       P+                +     G+         D +     L
Sbjct: 70  YLSIDPVVQHCRCRTVPLIWHDELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAISML 129

Query: 145 MLLFPK-------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +             + L      +        +      +      +LT RE E L W 
Sbjct: 130 SMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQWA 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 190 GRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 209

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 33/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  + +     +S        +  +                    G S FL  
Sbjct: 1   MEKIKLLIVDDHQMVRLGLSSFMNIQPDIEVVGEAAD---------------GESGFLKT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++         + +     ++          L    F    +     A
Sbjct: 46  EILDPDVILMDLVMDRLDGIGATQKILAKNPER--------KILILTSFIDDEKVFPALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +     ++      +I      +  ++           
Sbjct: 98  AGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELY----------D 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA++++
Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 234

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +       + +  +           ++  L+              
Sbjct: 19  IKVLLADDHPVVRKGLGSCLNNLEHIEIVGEAVDGQETVSKVRELS-------------- 64

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  + +    +  + +                 L   +       +       
Sbjct: 65  -PEIVLMDLDMPTMSGLEATKIIRRE--------FPLVKVLILSIHTNKDYVLQIIKSGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +   G     D      +L  Y A    +     G   +LT
Sbjct: 116 QGYVLKDAPLTELVRAIESVHGGGAFFSPDISQ--IMLDQYLAE--ATNGEESGNSKKLT 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L+ I+EG+++ E+A  +G+   TV  +   +M K      +G   YA+ + I+
Sbjct: 172 NRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIHNVAGLTKYAIAHGII 230


>gi|183601417|ref|ZP_02962787.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191083|ref|YP_002968477.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196489|ref|YP_002970044.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219023|gb|EDT89664.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249475|gb|ACS46415.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251043|gb|ACS47982.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794072|gb|ADG33607.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 226

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 71/246 (28%), Gaps = 29/246 (11%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+  + E   +  + +      +  +            +  L                 
Sbjct: 1   MVIADDQELVRAGFTMVINSQPDMQVVGQASDGTQAVQLVERL---------------HP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  + S         +      +     Q    +    F      ++      + 
Sbjct: 46  DIVLMDVRMPSMDGLAATAQITSHADGE-----QHTRVIILTTFDLDEYVMSAINAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---------NMFKSYDVHW 180
           +     +   +   +  +     II       +                     + +   
Sbjct: 101 FLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGRQQSEVAAEYTD 160

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E L  I+ G ++ EIA  L IS  TV  ++A I++K   + R  A+ +A
Sbjct: 161 PELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRVQAVVFA 220

Query: 241 VRNNIV 246
             N++V
Sbjct: 221 YENHLV 226


>gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 68/229 (29%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  + ++     +             G      VR        +D  
Sbjct: 3   IRVLIADDQMMVREGFSVLLNAMPDIEVVGEA-----VNGREAVRRVRELSPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +  S+             L    F              + +       
Sbjct: 58  MPELNGIEATREIVASD--------DGAKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    +      +          ELT RE E L  I
Sbjct: 110 RQLADGVRVVAAGEALLAPSVTKRLITEFSKLVQAPRPSAATQLAYGELTDRETEVLVLI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A    +V
Sbjct: 170 AQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 218


>gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 241

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 63/229 (27%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L  ++  +  +             G     L          +D +
Sbjct: 24  IRAMVVDDHALFRRGLVSVLDEEPDIDVVSEAN-----DGEEAVRLAAELRPDVVIMDVM 78

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +           +     +   +     +           Y      V
Sbjct: 79  MPHTSGIDACSRIRE--------AVPHTRFIMLTMSDDESDLFDALKAGATGYLLKAISV 130

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      I      ++    A  A    +         ELT RE E L  +
Sbjct: 131 TELAEAVRAIVKGDSFINPAMATKLIGEFAELAKQESAPPSRT-TIPELTRRETEVLKLL 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    + EI   L I+ NTV N++  I+ K    +R+ A  YAVR   V
Sbjct: 190 ARSLNNREIGERLFITENTVKNHVRKILEKLQVHSRTEAAIYAVRAEYV 238


>gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
 gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria
           lactamica ATCC 23970]
          Length = 218

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHDFEVIGEAADGLSGIKMINRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAADGDNVFSPEMTAKLVKSLISPQPAQGTQTLSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR
 gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum]
 gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 247

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 19/234 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L+            +    +++Y G S+F +       E+     V  +W        
Sbjct: 14  DFLSESASAKSKDDVLLLFGKISQYFGFSYFAISGIPSPIERIDSYFVLGNWSVGWFDRY 73

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDV 137
             +       ++                             +      + + +       
Sbjct: 74  RENNYVHADPIVHLSKTCDHAFVWSEALRDQKLDRQSRRVMDEAREFKLIDGFSVPLHTA 133

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFE----LTGREVE 192
           A  +  +     +   +       + L+AAY  ++ +        +  +    +T RE E
Sbjct: 134 AGFQSIVSF-GAEKVELSTCDRSALYLMAAYAHSLLRAQIGNDASRKIQALPMITTRERE 192

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + W + GKT+ EIA ILG S  T+ N I +I RK         IA + R  I+
Sbjct: 193 IIHWCAAGKTAIEIATILGRSHRTIQNVILNIQRKLNVVNTPQMIAESFRLRII 246


>gi|315502130|ref|YP_004081017.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408749|gb|ADU06866.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 220

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 74/242 (30%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +VL  +     + +  L  R+  +  +                    G S   +V
Sbjct: 1   MNPIRVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGD---------------GGSGLSVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      +  R +          +L     +    F           
Sbjct: 46  REQRPDIVLMDVRMPGGDGLEATRRILT------DPMLDGVQVVMLTTFDDDEYLFEAIR 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         +R  +  +     ++       +       A   +S     G+  
Sbjct: 100 AGAAGFLLKDTPPDALRDAVRTVAGGDALLSPAVTRRV------LAAAARSPVADPGRLA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  +  G+++ EI   L +S +T   Y++ +++K   + R+  +  A  + 
Sbjct: 154 GLTARERDVLAQVGAGRSNAEIGQALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 11/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D           +     +  + E   GA    L R  +     +D  +   
Sbjct: 1   MTRVLLADDQPLIRAGFRVLLDAEDDIDVVGEASTGAEAVDLARETVPDIALVDVQMPEM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +A          L     +    +              + +     +   + 
Sbjct: 61  DGIEATRRIAA------DPALSSVRVVILTNYALDEYIFDALRAGASGFLVKDTEPEELI 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++  +    +      +       D        LT RE E +T + +GK
Sbjct: 115 RAVRTVAVGEALLAPNVTRRL----IAEFAATPRVDGPAPLVSALTPREREVVTLVGQGK 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++EI+ +L IS  T   +++  M K  ++ R+  +  A  + +V
Sbjct: 171 SNEEISRLLHISHTTAKTHVSRAMTKLGSRDRAQLVVAAYESGLV 215


>gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
 gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01]
          Length = 217

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 64/222 (28%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G                +D  + +   
Sbjct: 3   RVLLADDHALFRQGLKSLLEAEGDFRVVGEAKDGWEALRHALEARPDVILMDIQMPNLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +                 +   ++                Y     D + +   
Sbjct: 63  VQATQAILKEW--------PEAKVIILTMYRQDAYVFEAVKAGARGYLLKDTDASELIGA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    I        +     +       EL+ RE++ L  +++G T+
Sbjct: 115 IRRVHAGEVLLDAELAGRI------IQDFRAKKESSLPLHAELSEREIQILKLVAQGYTN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV N ++ I +K     R+ A  YA+R  +
Sbjct: 169 LEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210


>gi|257792552|ref|YP_003183158.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|325832688|ref|ZP_08165451.1| prevent-host-death family protein [Eggerthella sp. HGA1]
 gi|257476449|gb|ACV56769.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|325485827|gb|EGC88288.1| prevent-host-death family protein [Eggerthella sp. HGA1]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 69/242 (28%), Gaps = 22/242 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++V +++  + +   S    +    D +  +                    G     L  
Sbjct: 3   ERVQVLVADDQDLVRSGFKLILMSYDGIDVVGEARD---------------GHEAVELAS 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +           L+    L    F          A 
Sbjct: 48  RLHPDVVLMDIRMPRMNGIEATRAIR------DDAALENVHVLILTTFDLDEYVYDALAA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDF 184
             + +     +   I   + ++     +I       +     A +               
Sbjct: 102 GASGFLLKDAEPDEIASAVRVVAQGDALIEPSITRRLIETFVAARPASLGGAAAVAAGLR 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G T+DEI   L IS  TV  ++A IM K     R+  +  A    
Sbjct: 162 TLTDREREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEGG 221

Query: 245 IV 246
           +V
Sbjct: 222 LV 223


>gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 244

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 19/239 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDW 82
           L    +LL  +       +   ++      VG  H LL      D     +  ++    +
Sbjct: 6   LDLSRELLQSIHRTATPENVRDQLLKKLAGVGVEHVLLATLRICDAVPCDRRPTVFIGTY 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNR 129
           P +  R         +  V++   E       T P+             +     G+   
Sbjct: 66  PDEWARRYYARNYILHDPVVRGVAERASGFAWTDPDLIASDDREARRVLDEAGEFGLHEG 125

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187
           +      +     G+  +  +   +       + L+  Y        +          L+
Sbjct: 126 FTLPLLTLEGDTAGVSFVG-ERLDLSPAVRGMLTLVGTYALGQVLLLANGQAEALSEPLS 184

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W ++GK+  EI   +GIS +    ++ ++ RK  T +R+ A+A  +R  I+
Sbjct: 185 PRERESLQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 243


>gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 209

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 16/219 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +        + E   G      V+ +      +D  +      +
Sbjct: 2   LLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKEKPDVVLMDVSMPKMDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +        +Y   ++         F      I       + Y        ++   ++
Sbjct: 62  ATKR-----LKQYDETIKILILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASII 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +              +                       LT RE E L  I++G+++ E
Sbjct: 114 AVHQGNANFHPKVTPAL-------MGRSTVKKEIENPFSMLTKREQEVLREIAKGRSNKE 166

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 167 IAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24]
 gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
 gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 221

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  + ++     +             G      VR        +D  
Sbjct: 3   IRVLIADDQMMVREGFSVLLNAMPDIEVAGEA-----VNGREAVAKVRELSPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +  ++             L    F              + +       
Sbjct: 58  MPELNGIEATREIVAADST--------SKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    +  +   +          +LT RE E L  I
Sbjct: 110 RQLADGVRVVAAGEALLAPSITKRLITEFSKLSETPRLMPSAQAAYGDLTDRETEVLVLI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 170 AQGLSNGEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 218


>gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 208

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 73/240 (30%), Gaps = 38/240 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + I++  +       +  + ++++ +  +   +                G        
Sbjct: 3   PPIRILVVEDHPVVRHGIIAILSQAEDMEVIAEAEN---------------GLEAINQYE 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      + +  +                 +    + T  +       
Sbjct: 48  THQPDITLMDLRMPHLEGVEAIARIRAKTST--------AQIIILTTYDTDEDIYRGLQA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +    R I  +        A   A+           D +
Sbjct: 100 GARGYILKDTTATELIQAIRTVHGGKRYIPSEV-------ALKLADRI--------DDSD 144

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +S+G ++ EIA  L IS  TV  +I +I+ K   K R+ A+  A++  +
Sbjct: 145 LTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALKKGL 204


>gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 61/225 (27%), Gaps = 14/225 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P   D +AR    +            T   G       +        LD  +  
Sbjct: 1   MVVDDHPMWRDAVAR-DLTESGFDVV-----ATAGDGPQAVRRAKAVSPDVLVLDLNLPG 54

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                + + +  S              L         + +         Y   +     +
Sbjct: 55  MPGVQVCKELVGSH--------PGLRVLVLSASGEHADVLEAVKSGATGYLLKSASTQEL 106

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +        +       A+          K  +LT RE E L  +++G
Sbjct: 107 TDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQLTDRETEVLRLVAKG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 167 LSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 211


>gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 216

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 17/227 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
           T     +    D       L   +     +  + E   G                +D  +
Sbjct: 4   TPGRVRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKM 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + +R +                 L    F      +         Y     D  
Sbjct: 64  PGTDGIEALRRLRELANP--------ARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPD 115

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     ++  +    +                   +   LT RE E L+ I+
Sbjct: 116 ALAGAIRSVHAGHVLLQPEVAVALLT--------QDDQGPSSSRGGALTDREREVLSHIA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 168 DGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214


>gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 64/225 (28%), Gaps = 10/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +          E   GA    L          +D  +   
Sbjct: 1   MTSVLIVDDQPLQRFGFRMLLESQPDTSVAGEAGHGAEAVRLAAELRPDVVLMDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGIEATRLIVATGG--------RSRVLVLTTFDLDEYAHAALRAGASGFLLKDAHPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            G+  +     ++       +    A +             +   LTGRE E L  ++ G
Sbjct: 113 AGVRAVAGGDAVVAPAITRRLLDAYAHHLPARPPGPVDDDPRLAALTGREREILLAVARG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T+ EIA  L +S +TV  ++  ++ K   + R  A+  A    +
Sbjct: 173 WTNGEIAARLVLSESTVKTHVGRVLAKIGARDRVQAVILAYDLGL 217


>gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
 gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319]
          Length = 208

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 33/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     V    +    +  +                    G     L    
Sbjct: 2   INVLLVDDHEMVRIGVGAYLSAQADIHVIAEAAN---------------GQQAVELGLQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDIILMDLVMEEMDGIEATKQLIKQW--------PEAKVIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   +    ++  +   ++                      ELT
Sbjct: 99  TSYLLKTSKAGEIAAAIRRTYEGQSVLEPEVTGKM----------MSKMRKPSLPHEELT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +++GKT+ EIA  L I+  TV  ++++++ K   + R+ A+ YA ++ +
Sbjct: 149 AREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKL 206


>gi|290962896|ref|YP_003494078.1| two-component regulator [Streptomyces scabiei 87.22]
 gi|260652422|emb|CBG75555.1| putative two-component regulator [Streptomyces scabiei 87.22]
          Length = 222

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 10/226 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   + +     +  T  +  + E   G     L          +D  +   
Sbjct: 1   MTTVLIADDQPLQRLGFRMLLEGTPGLTPVGEAEHGGEAVRLAAQLRPDVVLMDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGLEATRRIVAAGG--------RTRVLIVTTFDLDEYAYDGLRAGASGFLLKDARPEELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            G+  +     ++       +    A        +      +   L+ RE E L  I +G
Sbjct: 113 AGIHAVATGDAVVAPSLTRRLLDAYAHQVLAPSGTAPAADPRLESLSEREHEVLVAIGQG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L ++ +TV  ++  ++ K   + R  A+  A    +V
Sbjct: 173 WTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVITAYDAGLV 218


>gi|269796958|ref|YP_003316413.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269099143|gb|ACZ23579.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 222

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    L R        +D  +     
Sbjct: 4   RVLLADDQALLRGTFRLLLDSVPDITVVGEAADGAEAVRLARSAQADLVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +         + L     L    F T    +       + +     D A +   
Sbjct: 64  IEATRQICA------DDALAGVKVLVLTTFETDELVVAALRAGASGFLGKGVDPAALIDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    +++       +  +                   +LT RE E  + ++ G ++
Sbjct: 118 VRTVAEGEQLLSPAATRSL--IERVVQEPEPEPPAVVHGMSDLTEREREITSLVAGGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EI   L IS  TV  ++   M KT  + R+  + +A    +
Sbjct: 176 TEIGQHLFISPATVKTHVNRAMMKTGARDRAQLVVFAYDAGL 217


>gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 223

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 68/242 (28%), Gaps = 28/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + +++  +       +         +  +            + A+            
Sbjct: 6   ADPIRVLIVDDHAVVRRGIRTYLELLGGIEVLAEASDGQDALDTLKAMA----------- 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                  +  D ++       +   +  S     Y  ++         F  L       A
Sbjct: 55  ----AHRELPDVVLLDLVMPRMDGVLVTSRITSQYPDVRVV---ILTSFGELERIQGALA 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +     +   +         +       +           +          
Sbjct: 108 NGASGYLLKSAGPDEVVAAIQAAARDEMFLDPAVARRLT----------RQMVSPPTGVG 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I+ G ++ EIA  L IS  TV  +++SI+RK    +R+ A   AVR  
Sbjct: 158 ALTERERDVLILIANGYSNKEIADELVISERTVRTHVSSILRKLRLSSRTQAALVAVREG 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv.
           tabaci]
          Length = 232

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 23/221 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 14  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 71

Query: 100 NVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N             +    + +       D + +   L L 
Sbjct: 72  PIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 131

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 132 NARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPTQCKLSTRETGVLKWVA 191

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            GK+  EIA I  IS  TV  +++++  K   +T   A+  
Sbjct: 192 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYK 232


>gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
 gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum
           PSI07]
          Length = 236

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 14/234 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P+  D                 + ++   +G  +            K    +   +P   
Sbjct: 3   PSFQDAYHAFRTAQDERQLFREITSIARQLGFDYCCYGVRMPLPVSKPAVAIFDTYPAGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVA 138
           ++    S   +    ++        +              +     G++      ++   
Sbjct: 63  MQHYQASGFLEIDPTVRAGASSSDLIIWPVSIRDEAMRLWSDARDFGLNIGVARSSWTAR 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                L L      +   +          +  LA    + F    +    +  LT RE E
Sbjct: 123 GAFGLLTLARHADPLTAAELDRLSATTNWLANLAHTLMSPFLMPKLVPESNAVLTARERE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +  A+  A+   ++
Sbjct: 183 VLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIVIGLI 236


>gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 69/226 (30%), Gaps = 10/226 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L + +      +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVRLAKEERADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L R   +    F      +       + +     +   +   
Sbjct: 64  LAATRLISA------DPTLTRVRVVILTTFEVDDYVVQSLRAGASGFLGKGAEPEELLNA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGKDFELTGREVECLTWISEG 200
           + +      ++       +      Q +     D       +   LTGRE E L  ++ G
Sbjct: 118 IRVAAGGDALLSPTATKGLIARFLAQPDDSADGDRGAARSERLATLTGREREVLVQVAGG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++DEIA  L +S  TV  ++   M K   + R+  + +A  + +V
Sbjct: 178 LSNDEIAERLEVSPLTVKTHVNRGMAKLGARDRAQLVVFAYESGLV 223


>gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 10/224 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           HL    D     + L    S       + E   G     L          +D  +     
Sbjct: 7   HLLLVEDHALMRMGLKGQFSLESDFEVIGEAENGQQAIDLAAQLQPNIVLMDIELPILDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +  +        ++         F    + +   A   + YC  + D  ++   
Sbjct: 67  ISATQKIKAT-----CPDIRVL---ALSAFGKDNQVVGMLAAGADGYCLKSIDWQQLLAV 118

Query: 144 LMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           + L+   G  +      ++  +L +                  L+ RE E L  ISEG +
Sbjct: 119 IRLIQGGGTYLDPQIAHKLASMLKSANTPTTAPAHRQTAPATVLSDREREVLQLISEGCS 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  T+ +Y+  I+ K +   R  A A AVR  ++
Sbjct: 179 NQEIANQLYLSLGTIKSYVRMILNKLSVDDRVQAAAKAVREGLI 222


>gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 227

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 79/244 (32%), Gaps = 24/244 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                V I+L  +DE     +     +   L  +   +                G +   
Sbjct: 1   MASNPVKILLVEDDELFRLGLRVRLQQEAGLEIIAEAED---------------GETALD 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L++ +      LD  +      +  + +          +L   +    P+          
Sbjct: 46  LIKQNSLDVVLLDVGLPGLGGIEACKQIKQQNPQL--PILVLTSHSQKPLI------SKL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  YC       ++ + L  +             EI        +     +     
Sbjct: 98  IEAGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIRSSIESSQSQSPEQNF-TKS 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LTGRE+E L+ +++GKT+ EIA  L I+  TV  ++ +I+ K     R  A+  A++
Sbjct: 157 DHPLTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVALQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 KRLI 220


>gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 219

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +    E   GA+   L          +D  +     
Sbjct: 6   RVLVCDDQVLIRTGLVTIIDAQPDLEVAGECGDGAAAVELAERLRPDVVVMDVRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +  D      +    L    F+             + +       A++  G
Sbjct: 66  IEATRRLAGAGVD------RPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHG 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +      L+  Y A +          D  LT RE+E L  I+ G ++
Sbjct: 120 IRTVSTGAALLDPEVTR--QLVGRYAARIRPPDAAAA--DARLTPRELEVLRLIANGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS+ TV  +++ I+ K   + R  A+ YA R  +V
Sbjct: 176 GEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218


>gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus
           lactis subsp. cremoris SK11]
 gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 209

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 81/242 (33%), Gaps = 33/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  + +     +S        +  +                    G S FL  
Sbjct: 1   MEKIKLLIVDDHQMVRLGLSSFMNIQPDIEVVGEAAD---------------GESGFLKT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++         + +     ++          L    F    +     A
Sbjct: 46  EMLDPDVILMDLVMDRLDGIGATQKILAKNPER--------KILILTSFIDDEKVFPALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I + +  +     ++      +I      +  ++           
Sbjct: 98  AGAKGYILKTSQAAEIAMAIRKVANGEDVLSDAVKEKIAQQKHRKHELY----------D 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA++++
Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|256389407|ref|YP_003110971.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355633|gb|ACU69130.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 222

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L            + E   GA   +           +D  + +   
Sbjct: 13  RLLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMPTMGG 72

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R + + +             L    + T  + +         Y         +   
Sbjct: 73  VEAIRRLRVEQ--------PAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAPREDLIRA 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +                       LT RE+E L  ++ G T+
Sbjct: 125 VRAAAAGQPVLAPTVAQRLMTRVQTPLAEPAPPGDA------LTERELEVLRLVASGTTN 178

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E A  L IS  TV  ++     K   + R+ A+A A +  ++
Sbjct: 179 RETARKLFISEATVKTHLLHAYAKFGVRDRAAAVAEAYKRGLL 221


>gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 214

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +        + E   G     ++         +D  +     
Sbjct: 6   RLVVVDDHALFRRGLISLLEEMPEFDVVGEASDGEEALKVIAQRHPDIALVDVNMPRMDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             LV+ +   +             L   +     + I       N Y     +   +R  
Sbjct: 66  IALVQALRRQKS--------ALKVLMLTISQEDQDLIGAIRAGANGYILKNTEPEDLRKA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L+ +     ++  + +  +  +                    L+ RE+E L  ++EG T+
Sbjct: 118 LLNIAEGKGVLSPEVVPPVLGVM--------QRGTLDSSPQLLSDRELEVLQCLAEGLTT 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS NTV  +I  I+ K     R+ A+  A +  I+
Sbjct: 170 QQIASRLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGIL 212


>gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  + ++     +             G      VR        +D  
Sbjct: 3   IRVLIADDQMMVREGFSVLLNAMPDIEVVGEA-----VNGREAVQRVRELAPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +  ++             L    F              + +       
Sbjct: 58  MPELNGIEATREIVAADG--------AAKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    +  +   +          +LT RE E L  I
Sbjct: 110 RQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAYGDLTERETEVLVLI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 170 AQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 218


>gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 60/223 (26%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E    +    L          +D  +     
Sbjct: 4   RVLLADDQTLLRATFRILIDSCEDMEVVAEAADGAEAAALTSAHAPDVVVMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F T            + +         +  G
Sbjct: 64  LAATSAI------CTDPELSATRVLILTTFETDEYVARALRAGASGFLGKDVGADELLTG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +        +              LT RE E +   +EGK++
Sbjct: 118 IRTVASGDSLLSPVATRALITRFLAAPDPEAPL-APSELLASLTAREREVMALAAEGKSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L +S  TV  ++   M K   + R+  +  A ++ +V
Sbjct: 177 AEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQSGLV 219


>gi|313835112|gb|EFS72826.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314929089|gb|EFS92920.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970815|gb|EFT14913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328905840|gb|EGG25616.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 218

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 67/241 (27%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +     S    L    D +  +      V     +  +             
Sbjct: 3   DPIRVILVDDQSLVRSGFRMLIESEDDMEVVAEASNGVEALDVLRRM------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +  S  D           L    F            
Sbjct: 50  --PVDVALMDIRMPQMDGVEATRRITASPLD--------TKVLILTTFDLDEYVYAALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++       +  L      +         +   
Sbjct: 100 GASGFLLKDARPTELLSAIRNVADGNAVVAPSATRRL--LDHVVPTLPNDPKAADKRLSV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    +
Sbjct: 158 LTDREQEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 246 V 246
           +
Sbjct: 218 I 218


>gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri]
 gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   D        +  + + +   ++L          K D  +  ++P    +    +  
Sbjct: 18  IKTCDNNKDINQCLSEMAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDVARIRIG 143
            KY  V+        P+   + E                 +G+   +             
Sbjct: 78  LKYDPVVDYSKSHHSPINWNVFEKKSIKKESPNVIREAQESGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L             + L        +L++   N  K    H   D  LT RE ECL W S
Sbjct: 138 LSFAHSDKDIYTDSLFLHASTNVPLMLSSLVDNYQKINTTHKKSDSILTKREKECLAWAS 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 198 EGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|271966918|ref|YP_003341114.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510093|gb|ACZ88371.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 226

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     +  + E   G     L R +      +D  +     
Sbjct: 3   RVLVADDQALLRGSFRVLVDTAPDLTTVGEAGTGVEAVGLARSERPDVVLMDVRMPEMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F              + +         +   
Sbjct: 63  IEATRRI------CGSADTAGVRVLMLTTFDLDEYVYAALRAGASGFLLKDTPPGELLAA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    A  A   +      G+   +TGRE + L  I+ G ++
Sbjct: 117 IRVVAAGEGLLAPTVTRRLI---AEFARRPEPSQPLAGELGGVTGRERDVLALIARGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  ++ K   + R+  +  A    +V
Sbjct: 174 TEIAGHLRLSLATVKTHVGRLLSKLGARDRAQLVILAYETGLV 216


>gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 72/225 (32%), Gaps = 12/225 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           A +       +           +G  H  +V            +VS  +P + V     +
Sbjct: 4   ATLPESRDVRTLIETFRQAALQIGYQHHAIVELSGTSHPASIDVVSLHYPSEWVEHYTRN 63

Query: 94  EKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIRIG 143
           +      V +       P                      AG+DN             + 
Sbjct: 64  DYFTIDPVHRAAFRYSTPFPWNDIATSNLRERHLLMEAEDAGLDNGISIPLHQPLGRVLL 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGK 201
           + L           +     LL        +S            LT RE  CLTW++ GK
Sbjct: 124 VSLSGTAPTHDADAKWRNAYLLGMQFNLQLQSMRTCRPIPPSVHLTDREQMCLTWVARGK 183

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  IA +L IS+ TV+ +I + M K  T++R+ A   A R  ++
Sbjct: 184 SSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 233

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 31/246 (12%)

Query: 1   MNFEIQ-QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           M  E +  ++++L  + E     ++ +    + +  +                    G  
Sbjct: 16  MIMETELPISVLLVDDHEMVRIGLAAVLGTEEGIEVVGEAGS---------------GEE 60

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
              L          +D ++      +  R +           L     +    +    + 
Sbjct: 61  GIRLASEYKPNVILMDLVMDGMDGIETTRQVTRL--------LPETKVIVLTSYLDDEKM 112

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     Y   T   + I   +        ++           A+   N F+     
Sbjct: 113 YPVIEAGAFSYLLKTSRASEIADAIRAAARGQSVLESQV-------ASKMMNRFRQPQAE 165

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                ELT RE+E L  +++GK++ +IA  L I   TV  ++ +++ K   + R+ A  Y
Sbjct: 166 APAHTELTDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKLGVEDRTQAAIY 225

Query: 240 AVRNNI 245
           A +N +
Sbjct: 226 AYKNGL 231


>gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
 gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium
           violaceum ATCC 12472]
          Length = 215

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 71/240 (29%), Gaps = 30/240 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + I+L  +     S +  L  R D    +                    G        
Sbjct: 3   QAIRILLIDDHTLFRSGLKALLQRQDDFLVVGEAAD---------------GLDGVKQAE 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +                 L   V     +      G
Sbjct: 48  LLKPDVVLLDLDMPVMNGREALAQILS--------GCPNAAVLMLTVSEDGDDLAECMRG 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     +   +   +        ++  +   ++           +       +   
Sbjct: 100 GARGYLLKNINADFLLDSIRRAVDGDSVLSPEMTAKL-------LARLRQPAAKASEADA 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W++ G ++ EIA  L ++ +TV  ++ +I+RK +  +R  A  YAV + +
Sbjct: 153 LTPRERETLGWLARGASNKEIARALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212


>gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
 gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter
           sp. SXCC-1]
          Length = 244

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 12/227 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DL A +       +      AL   +G   + +         +   I ++ +P   +   
Sbjct: 17  DLAADIRGAPDHQALAEAFGALVSRLGPHAYSMGTIHKTDPLQRHLI-ATTYPDHWMAHY 75

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH------TLPENITPPAGMDNRYCS---LTFDVARIR 141
                     V+        P            ++       +  + S   +   +A   
Sbjct: 76  VARNYHHIDPVIDPLRHGLHPYDWKDIHIENRRQDTMLREFGEMGFRSGHAVPLALAPGT 135

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISE 199
           + L+ +      I   +   I L A+     +              LT RE ECLTW+++
Sbjct: 136 LLLVSIASYDPHIDTRQQMAIQLAASQFHYRYHQLGRKHAGITGTGLTRRERECLTWVAQ 195

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK + +I  IL +S NT+  ++ + +RK     R  A   A    ++
Sbjct: 196 GKDTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKATCLGLI 242


>gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 225

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 14/231 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V            ++ ++  +             G     +          +D 
Sbjct: 4   PVRVLLVDDQHLVRTGFRVILEVEDDIEVVGEA-----ADGQRAVSMATALRPDVVLMDV 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +          VL          F              + +      
Sbjct: 59  EMPVLDGLEATRRITADATPGGPAVL------ILTTFDRDDYLFAALRAGASGFLLKNGT 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLT 195
              +   + ++     +I       +  ++ +        D        +LT RE E L 
Sbjct: 113 PEDLIDAVRVVARGEGLIASALTRRV--ISTFARPGAAPPDPRHDAATADLTPREREVLE 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA +L +   TV  +++ ++ K   + R  A+ +A  + +V
Sbjct: 171 LVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 221


>gi|229014836|ref|ZP_04171934.1| Response regulator [Bacillus mycoides DSM 2048]
 gi|228746456|gb|EEL96361.1| Response regulator [Bacillus mycoides DSM 2048]
          Length = 290

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 13/248 (5%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLL---ARMIPLDCTVSWTMRMYALTEY------VGAS 59
            + ++ E EQ T  + ++P R++      R++ ++  V  T  +  + +       VG +
Sbjct: 46  TVSVHSEPEQGTFVICNIPLRTEPAHDTIRLLLVNDQVIITDSLKQILDQHTDFNVVGTA 105

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                  +  +  + D ++       +     L E  + +  ++     F   F    + 
Sbjct: 106 RDGGEALEHCERSQPDIVLMDISMQGMSGIETLLEMKQRWPDMKVV---FMTTFEDSLQA 162

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            T        Y   +     ++  L L++  G  I +     I      Q    +     
Sbjct: 163 ATALEHGAEGYMLKSIHPREMKEALKLIYNGGIWIDQSVATRIFEEMKSQREQLEKIGSS 222

Query: 180 WGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                + LT RE+E L  +S G     IA  L +S  T+ NY +++  K +   R  AI 
Sbjct: 223 QENFPYGLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAIK 282

Query: 239 YAVRNNIV 246
            A + NIV
Sbjct: 283 RARKENIV 290


>gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 237

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLLA +            +   T  +   +        +   +      S++P    R
Sbjct: 5   AEDLLAGLDSARSEEEAFRSIETATTALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWKR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
               +       +L        PV  +                 G+   +   +FD    
Sbjct: 65  RYVEAGFLDIDPILAHGRRSQQPVVLSETLFASSHQMWVEAQSFGLRFGWAQSSFDAYGG 124

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+  +G +   +      R+  +   A           +    +  LT REVE L
Sbjct: 125 MGMLALVRSRGPVTEAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 185 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|324997378|ref|ZP_08118490.1| putative two-component system response regulator [Pseudonocardia
           sp. P1]
          Length = 239

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 65/211 (30%), Gaps = 13/211 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   ++    +  + E   G +   L          +D  +      +  R +     
Sbjct: 34  AGLRTVLAAAPDIEVVGEASDGGAAAELAESLTPDVVLMDVRMPGTDGIEGTRRIRAL-- 91

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                 ++         F              + +     +   +++ +  +     +  
Sbjct: 92  --RDPGIRVLVVTT---FDLDRHVYDALRAGASGFVLKDVEPEDLQVAVRTVHAGHELFA 146

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +       + +    +   G    LT RE + L  ++ G ++ EIA  L +   
Sbjct: 147 PSVTRRLV-----GSFVPADPEPGAGPAGALTERERQVLGLVAAGLSNAEIAARLVLGGT 201

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++++++ K   + R   + +A  + +V
Sbjct: 202 TVKTHVSNLLTKLDLRDRVQLVVFAYEHGLV 232


>gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 217

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S +  L + ++ +  +               L               
Sbjct: 2   IRMIIVDDHAMVRSGLRMLLSGTEDMEVIAEASDGDEGIRTALEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D +   A  +       +         +               
Sbjct: 47  KPDVVLMDLSMP--QGKDGLTAAAELKGLLPDTAILIL-----TMHDDDEYLFRAIHAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +      +       +        +  +  D        L+
Sbjct: 100 AGYVLKNAPHEELLTAIRSIAQGDAYLYPTATKRL---MKEYVDRMQRGDSG-DLFHALS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L+  ++G  + E+A +L IS  TV  + +++M K   K+R   I YA++  ++
Sbjct: 156 EREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSNVMEKLGLKSRPELIKYAMKKGLL 214


>gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   D        +  + + +   ++L          + D  +  ++P    +    +  
Sbjct: 18  IKTCDNNKDINQCLSEMAKIIHCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKYYDEAGL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIG 143
            +Y  V+        P+   + E                 +G+   +             
Sbjct: 78  LEYDPVVNYSKSHHSPINWNVFEKKSIKKESPNVIKEAQASGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L             + L        +L +   +  K    H   D  LT RE ECL W S
Sbjct: 138 LSFAHSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTTHKKSDSILTKRETECLAWAS 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 198 EGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|238061615|ref|ZP_04606324.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237883426|gb|EEP72254.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 233

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  ++    S    L    D +  +           R  A               
Sbjct: 13  PIKVLLADDEGLVRSGFKVLLDLEDGITVVGEATNGAEAVERARAT-------------- 58

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +A +        L++   L    + T           
Sbjct: 59  -RPDVVLMDIRMPKLDGIQATAQIAETH------GLEQVRVLILTTYDTDEYVFEALQAG 111

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A +   + ++     ++       +  +  + A    +      +   L
Sbjct: 112 VSGFLLKDAGPAELLHAIRVVAAGDALLAPRITRRL--IGQFTAQRTATQ-AAESRLAVL 168

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT +  G +++EI   L +S  T   +++  M K   + R+  +  A +  +V
Sbjct: 169 TQREREVLTLVGRGLSNNEIGAELFLSPATARTHVSHAMAKLGARDRAQLVVIAYQTGLV 228


>gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis EO147]
 gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 74/227 (32%), Gaps = 12/227 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
             A +       +           +G  H  +V           ++VS  +P + V    
Sbjct: 2   FSAALPESRDVRTLIETFRQAALQIGYQHHAIVELSGASHSASVNVVSLHYPSEWVEHYT 61

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIR 141
            ++      + +       P   +                  AG+DN             
Sbjct: 62  RNDYFDIDPIPRAAFRYSTPFSWSDVATSNLRERHLLMEAEDAGLDNGISIPLHQPLGHV 121

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISE 199
           + + L           +     LL       F+             LT RE  CLTW++ 
Sbjct: 122 LLINLSGTAPTHDAEAKWRNAYLLGMQFHLQFQSMRTSRPIPPSVHLTDREQICLTWVAR 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK+S  IA +L IS+ TV+ +I + M K  T++R+ A   A R  ++
Sbjct: 182 GKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 224

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   GA    ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAVEILRSTAVDVVLMDVRMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F       +      + +         +   
Sbjct: 64  VEATRRIRAR----TDP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +         K  E LTGRE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRRL--LDRFSPMLPSGRKEPQDKHVEKLTGREREVMMLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 208

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 24/228 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL----FQEQKLDSIV 78
           +  +    D       L+  +S   ++  +    G    LL          +   +D ++
Sbjct: 1   MPKIALVDDHFIVRQGLEFLLSTQPQIEVVGS-FGEGQALLDALATDQIEPELILVDLVM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L++ +                 L    +      ++      + Y     D  
Sbjct: 60  PEMNGITLIQKLKEQHAGI--------KILVLTSYVDEEHVMSAMQAGADGYEMKDVDPE 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +    ++I +D    +  +      +            +L+ RE E L  ++
Sbjct: 112 ALMTSIETVLQGDKVIHKDAQQVMDTVITKPHML-----------NKLSKRETEVLKEMA 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N+++
Sbjct: 161 KGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLI 208


>gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C]
 gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C]
          Length = 259

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 10/231 (4%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
           + R + V+ +    D       +   +        + E   G S              +D
Sbjct: 28  DMRGTTVTDVLVVDDQDLIRGGIAALLRAAPGFAGVAEASDGESAVAAALAHRPDVILMD 87

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +   ++     ++          F              + +     
Sbjct: 88  IRLPGIDGITAAERILAGQQGTRSRII------VLTTFDVDEYVYAALRAGASGFLLKDT 141

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              R+   +  +     +        +       +   +           LT RE + L 
Sbjct: 142 PPERLISAVTTIAGGDMLFAPAVTRRLI---EAYSARTEGPGGDDRTLSRLTNREQDVLR 198

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  +DEIA  L ++  TV  ++   M K   ++R+ A+A A    +V
Sbjct: 199 LVARGLGNDEIAAELVVTEATVKTHLHRTMTKLGLRSRAQAVAVAYEAGLV 249


>gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 224

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     I L   +          E   G                +D  +      
Sbjct: 12  VLIVDDQDLVRIGLRTLLEHAGGFAVAGEAADGLGAVESAIRLRPDVVLMDIRMPGIDGL 71

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +           L     +    F              + +         +  G+
Sbjct: 72  EATRRIVSDG------RLADTKVIVLTTFERDEYVFEALRAGASGFLLKNTPPPVLLDGI 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G ++       +  +A + +   +  D H   D +LT RE E ++ +++G +++
Sbjct: 126 RTVVDGGALLSPTVTRTV--IAEFTSRSPRPLDPHPHID-QLTNREHEVVSLVAQGLSNE 182

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   L +S  T   +++  M K + + R+  + +A ++ +
Sbjct: 183 EIGKRLYVSPATARTHVSHAMLKLSARDRAQLVVFAFQSGL 223


>gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 209

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 33/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  + +     +S        +  +                    G S FL  
Sbjct: 1   MEKIKLLIVDDHQMVRLGLSSFMNIQPDIEVVGEAAD---------------GESGFLKT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++         + +     ++          L    F    +     A
Sbjct: 46  EMLDPDVILMDLVMDRLDGIGATQKILAKNPER--------KILILTSFIDDEKVFPALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +     ++      +I      +  ++           
Sbjct: 98  AGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELY----------D 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L  ++ G ++ EIA  L IS  TV  ++++I  K     R+ A  YA++++
Sbjct: 148 DLSKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|328883286|emb|CCA56525.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 225

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 66/223 (29%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALEVLRSTAVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F       +      + +       A +   
Sbjct: 64  VETTRRICSQP----DP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLGA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +    +         +    +   LT RE E +  +++G ++
Sbjct: 116 IRSVHSGDAVVAPSTTRRLLDRFS-PMLPSSGKEPEHKELGRLTDREREVMLLVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R   +  A  + +V
Sbjct: 175 GEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESGLV 217


>gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 13/226 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + +  ++ L   +             G     LV         +D  + 
Sbjct: 1   MVVADDQAIVREGIVMLLGLLPGIEVVGAAK-----DGDEAVALVAEKAPDVVLMDLRMP 55

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +             R   +    F       T        Y +       
Sbjct: 56  RCDGVEATRRIRKEH--------PRTQVVVLTTFADDDSLFTALQAGARGYLTKDARGEE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +      +       +         +     +       LT RE E L  I+E
Sbjct: 108 IVQAIDAVMSGEAGLSPKVQRRLLERVTGSETVPAPCALPSELPDGLTPREAEVLVLIAE 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G ++ EIA  L +S  TV  +I ++  KT  + R+ A+ YA    +
Sbjct: 168 GLSNREIARALHVSAATVKTHINNLFAKTGARDRTQAVRYAYGRGL 213


>gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 16/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA               +D  +     
Sbjct: 11  RVLLVDDHQVVRRGLRTFLEVQEDIEVVGEAADGAEGTARAEELRPDVILMDVKMPGTDG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +   E             L    F      +         Y     D   +   
Sbjct: 71  IEALRRLRDLENP--------ARVLIVTSFTEQRTVVPALRAGAAGYLYKDIDPDALAGA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +        A              G+   LT RE E L  I++G+++
Sbjct: 123 IRSVHAGHVLLQPEV-------AEALLAAQDDQSGPGGRPGSLTDREREVLGLIADGRSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 176 REIARTLVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGI 217


>gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
          Length = 394

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            ++   C  S   +       +G  +F                +   +P +       ++
Sbjct: 168 EILNATCKKSLFEQTAYHVRQLGFKNFAY--RHQISGAASSRCMLDGFPAEWRLRYDAAD 225

Query: 95  KDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGL 144
                 V+Q       P+                +     G+         D +     L
Sbjct: 226 YLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISML 285

Query: 145 MLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +            +  +               +      +      +LT RE E L W 
Sbjct: 286 SMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQWA 345

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 346 GRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 394


>gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 220

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 26/237 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +       +  + +R +    +                    GA    L +    
Sbjct: 3   LMIVDDHPLFREGLKTIVSRDEKYTVVCEAGN---------------GADGIRLGKRHRP 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +       ++R +  +        L     +   +       +       + 
Sbjct: 48  AIMLVDISMPGKNGIQMIRELKQT--------LPETRFIIISMHSEADYIVEAFRAGASG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +  GL  +      +      E+        +              LT R
Sbjct: 100 YMIKESAAGNLIRGLDAVARGELFLDDALSQEVVYKLMQAKD---GQGSGRDPYTTLTAR 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++EG T+ E+A  L IS  TV N+  ++M+K    +    I YA R  ++
Sbjct: 157 EQEVLRMLAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGLI 213


>gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 14]
 gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei]
 gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 238

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            ++   C  S   +       +G  +F                +   +P +       ++
Sbjct: 12  EILNATCKKSLFEQTAYHVRQLGFKNFAY--RHQISGAASSRCMLDGFPAEWRLRYDAAD 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGL 144
                 V+Q       P+                +     G+         D +     L
Sbjct: 70  YLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISML 129

Query: 145 MLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +            +  +               +      +      +LT RE E L W 
Sbjct: 130 SMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQWA 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 190 GRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 219

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V + L  +       +  L      +A +      +    R+ AL            
Sbjct: 1   MAEVRVFLADDHAIVRGGLKALIDAQQGMAVVGEAADGLEACARVAAL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D ++       L   +A     +    ++        V            
Sbjct: 49  --------GPDVVIMDVSMPGLTGALATERLRRECPAVKVL---VLTVHEDKGYIRQLLT 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +   G  +      +   +                   
Sbjct: 98  AGASGYALKRAAPEELVRAIRTVAAGGVYLDPAVAQK---VVGGFVKPSPKGATGAAGAG 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E     + G  + EIA  L +S  TV  Y A  + K   K+R+  ++YA +  
Sbjct: 155 ELSEREAEVARLTAAGHGNKEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQG 214

Query: 245 IV 246
            +
Sbjct: 215 WL 216


>gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435]
 gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 207

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS 80
           ++ +    D       L+  +S    +  L         +  L   D+     LD ++  
Sbjct: 1   MAKVILIDDHHIVRQGLEFLLSTVADLEVLASLSDGQSLINYLNENDIPDIILLDLVMPE 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++      S              L    +      I+      + Y     +  ++
Sbjct: 61  MNGIEVTE-YVKSHFPDI-------KVLVLTSYVDDEHVISAINKGADGYEMKDVEPQKL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    RII  +    I  +++   N             +L+ RE+E L  + +G
Sbjct: 113 IQTIHDVLNNKRIIHPEAQSVIETVSSKPHN-----------TNKLSKREIEVLAEMVKG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EIA  L +S  T+  +++ I  K +   R+ A  YA+ N +V
Sbjct: 162 KTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENKLV 207


>gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5]
 gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5]
          Length = 215

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 15/218 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    +    +  + E   G     ++         +D  +        +
Sbjct: 6   ADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAI 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           +                   +    +      I         Y     +   +   L  +
Sbjct: 66  KKAIQQ--------FPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +    +  +        +M   +D    K ++LT RE + LT I+ GK++ EIA
Sbjct: 118 HAGEYKLSTAIMPHV------LKHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 172 AALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C]
          Length = 233

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 8/215 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D    W   +       G                 +      +V       +    
Sbjct: 19  VMVVDDHPMWRDAVARDLAAAGFDVVATAGDGPEAVRRARAAAPRVLVLDLNLPGMPGVQ 78

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              E       L+              + +         Y   +     +   +      
Sbjct: 79  VCKELVGADPALRVL---VLSASGEHADVLEAVKSGATGYLLKSAGAQELIDAVRRTAAG 135

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +        +       A           K  +LT RE E L  +++G +  +IA  L
Sbjct: 136 DPVFTPGLAGLVLGEYRRLATDPAPAAPDVPKAPQLTDRETEVLRLVAKGLSYKQIAERL 195

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS  TV N++ + + K     R   + YA+   +
Sbjct: 196 VISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230


>gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 288

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 13/245 (5%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R      L    D    +       +    + A    +G  + +          + 
Sbjct: 43  ARPHRRGSPMDLTILHDCFDALQRAPTAEAAFPPIAAAAAALGFRYCVYGLRRTLPLARP 102

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------ITPPAGM 126
           D  +  + P +               +++R      PV     +              GM
Sbjct: 103 DLQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWNAFDEPGDTAFWHDAACFGM 162

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-----FKSYDVHWG 181
              +    +D A     L L+     +   +        A+           +  D    
Sbjct: 163 RYGWSHGGYDRAGNLGVLTLVRDTTPLDADEISRLRAPCASLAHAAHAYLMPRLADPIAP 222

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L W ++GKT+ EI +I GI+  TV  ++ + + K     ++ A   A 
Sbjct: 223 VGTGLTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAA 282

Query: 242 RNNIV 246
              ++
Sbjct: 283 MLGLL 287


>gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae]
          Length = 349

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 16/226 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D   +    +       ++ A ++ +G  +            +    +   +P   
Sbjct: 3   LRWQDAYHQFNTAENEQQLFHQVSAYSKRLGFEYCCYGIRVPQPGSQPLVEIFDTYPPGW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--------TPPAGMDNRYCSLTFDVA 138
           +         +    ++        +     +              GM       +   A
Sbjct: 63  MAHYQARNYIEIDPTVRDGAASPNMIIWPDADAAEQPSLWRDARDFGMSVGVAQ-SSWAA 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREV 191
           R   GL+ +  +   +    +  + L A + AN        F    +       LT RE 
Sbjct: 122 RGVFGLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFLVPKLSPAASISLTKRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E L+W SEG+T+ EI   L IS  TV  +I +I+ K     +  A+
Sbjct: 182 EVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAV 227


>gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 112]
          Length = 238

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            ++   C  S   +       +G  +F                +   +P +       ++
Sbjct: 12  EILSATCKKSLFEQTAYHVRQLGFKNFAY--RHQISGAASSRCMLDGFPAEWRLRYDAAD 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGL 144
                 V+Q       P+                +     G+         D +     L
Sbjct: 70  YLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISML 129

Query: 145 MLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +            +  +               +      +      +LT RE E L W 
Sbjct: 130 SMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQWA 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 190 GRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
          Length = 206

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D     + +   +S    +  + E   G   +            +D ++      D 
Sbjct: 2   LVDDHEMVRLGVSSYLSIQEDIEVVGEAENGKIGYEKALELRPDVILMDLVMEEMDGIDS 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            + +                 +    F    +           Y   T     I   +  
Sbjct: 62  TKAILKDW--------PEAKIIIVTSFIDDEKVYPAIEVGAAGYLLKTSTAHEIADAIRA 113

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            +   R++  +          ++     +         +LT RE E L  I++GK++ EI
Sbjct: 114 TYRGERVLEPEVT--------HKMMERLTKKQEPVLHEDLTNREHEILMLIAQGKSNQEI 165

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L I+  TV  ++++I+ K     R+ A  YA ++ +
Sbjct: 166 ADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204


>gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
 gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
          Length = 219

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G S    +         LD  +     F
Sbjct: 8   VVLVEDHTILRHGLRSLLEAAGHVQVVGEAGDGQSAIRCILDTAPDLVLLDLNMPKMDGF 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +V  +   +             L   +       +       + YC  +     +   +
Sbjct: 68  SVVLEIRKRQ--------PETKILALTMHDDDAYILKAFKAGVDGYCLKSSGQDELMSAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I  + + +  L    +AN        W     LT RE E L  ++EG  + 
Sbjct: 120 NAVLSGKRFISPE-ISDKVLEGYLEANRTLKEQSDWDS---LTQREREVLKLVAEGYQNK 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  + A+IMRKT   + S   AYA+   ++
Sbjct: 176 EIAEYLFISPKTVEKHRANIMRKTDLHSASSLTAYAIEKGLL 217


>gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 9/231 (3%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
           E  TS    +    D           +     M+ + E   G     +          +D
Sbjct: 4   EPATSPAIRILLADDHHLVRTGFRVILEVESDMHVVGEAADGERAVSMAGALRPDVVLMD 63

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +           +   T      F              + +     
Sbjct: 64  VEMPRVDGLEATRRIVADADRSNGPAVLILTT-----FDRDDYLFAALRAGASGFLLKNG 118

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     +I  +    +    A       +  V      +LT RE E L 
Sbjct: 119 TPEALVAAIRVVARGEGLIAPELTRRVIAAFARPGGEPTTTAVALS---DLTPREHEVLV 175

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +   TV  +++ ++ K   + R  A+ +A  + +V
Sbjct: 176 LVASGASNAEIAANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 226


>gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius
           ED99]
          Length = 208

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 24/228 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL----FQEQKLDSIV 78
           +  +    D       L+  +S   ++  +    G    LL          +   +D ++
Sbjct: 1   MPKIALVDDHFIVRQGLEFLLSTQPQIEVVGS-FGEGQALLDALATDQIEPELILVDLVM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L++ +                 L    +      ++      + Y     D  
Sbjct: 60  PEMNGITLIQKLKEQHTGI--------KILVLTSYVDEEHVMSAMQAGADGYEMKDVDPE 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +    ++I +D    +  +      +            +L+ RE E L  ++
Sbjct: 112 ALMTSIETVLQGDKVIHKDAQQVMDTVITKPHML-----------NKLSKRETEVLKEMA 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EIA  L +S  T+  +++ I  K     R+ A  YA+ N++V
Sbjct: 161 KGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLV 208


>gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
 gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2]
          Length = 215

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 15/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     +++ +      +D  +      
Sbjct: 5   VLIADDHHVVRRGLVFFLKTQPEIEIIGEAKNGREAVEMMQTNQPDVVLMDLDMPVMNGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  S        ++         F      I       + Y     +   +   +
Sbjct: 65  EATRQIKAS-----CPEVKIM---ILTSFSDQDHVIPAIEAGASGYQLKDIEPDILVQAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L      +       +        ++            ELT RE+E L  I++GK++ 
Sbjct: 117 TQLMKGENQLHPKATSHL------LTHLTNKNSTERQPLEELTKRELEVLREIAKGKSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L I+  TV  ++++++ K     R+ A  YAVR+ I
Sbjct: 171 EIASSLYITEKTVKTHVSNLLSKLELADRTQAALYAVRHGI 211


>gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 227

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 76/237 (32%), Gaps = 28/237 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L  R         +D   +            G +   L R  L
Sbjct: 4   RVLLIDDHTLFREGLQELLKRH-------GIDTVGAVGD---------GETGIDLARDLL 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + +    +++R +  +       ++               + +        
Sbjct: 48  PDVILLDMRMPAMNGLEVLRRLRQAGLKM--PIV------MLTTSTEEQDLVECLRNGAQ 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L  +     ++  D    +  L         S         ELT 
Sbjct: 100 GYLLKEMEPGDLVDALEEILQGKTVVAPD----LAQLLVRVVQGKSSSANEPSPFDELTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  ++EG+++  IA  LGIS  TV  ++ +I+RK    +R  A   AV+  +
Sbjct: 156 REGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVLAVQQGL 212


>gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 237

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 11/182 (6%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAG 125
            ++ S +P D ++    +       V+      F P                       G
Sbjct: 54  YLIDSTYPDDWMQHYIDNCYQNIDPVIATARHEFLPYGWGSVGVRNKSQKNMMQEFQDIG 113

Query: 126 MDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             + Y        + + +  M    K        + +I +   +   M  +      +D 
Sbjct: 114 FRSGYAVPLPVSPSMLLLVGMASNDKEINFRDRTILQIAINQYHACYMQITNGGTSKEDC 173

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE ECL W+++GK + EI+ IL IS NTV  ++ +IM+K     R  A+  A+   
Sbjct: 174 SLSDRERECLLWVAQGKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAINLG 233

Query: 245 IV 246
           ++
Sbjct: 234 LI 235


>gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 224

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  + ++     +         T   G       R        +D  
Sbjct: 3   IRVMIADDHAMVREAFSVLLNAQPGIEVIT-----TAVDGLEAVAKARELHPDVIVMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  R +                 L    F+             + +       
Sbjct: 58  MPGLNGIDATREITRQ-------TDLPTKILVLTTFNLDEYVYEALRAGASGFLLKNASG 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++     ++  +    +  +A +      +      +  ELT RE E L  +
Sbjct: 111 VELAEAVRIVAAGEALLSPEITKRL--IAEFSRLSTSTKRPTQVRIDELTHRETEVLALV 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++  TV  ++  I++K   + R+ A  +A    +V
Sbjct: 169 AQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETGLV 217


>gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
 gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein
           [Nitrobacter sp. Nb-311A]
          Length = 191

 Score =  126 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 15/191 (7%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE---------- 118
             EQ++ ++V   WP                  +QR      P   +  E          
Sbjct: 2   SAEQQISNVVLHRWPKAWSERYFTQGYLFDDPTIQRVNTSTEPFLWSELEPSYRNTPAPT 61

Query: 119 ---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                     +   +      +     G  L   +   +      ++ L+A +      +
Sbjct: 62  RVMGEAREFNLGCGFTVPMITLDGQAAGFSLA-SERADVPPKVRRQLQLIAMHAFARALA 120

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +      LT RE++ L W++EGK+  EI VIL +S + V+     +  K     R+ 
Sbjct: 121 QKYNPAP-VNLTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQ 179

Query: 236 AIAYAVRNNIV 246
             A A+R+N++
Sbjct: 180 TAATALRHNLI 190


>gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    +  + + V G      V         +D  +     
Sbjct: 5   RVLIADDQVMVRQGFTVLLNAEPGIEVVGQAVDGLEAIAKVAELDPDVVLMDIRMPGLGG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F              + +       A +   
Sbjct: 65  IEATRTLTA-------PAEAAVKVLVLTTFDLDEYVYEALRAGASGFLLKDASAAELAQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++  +    +  +A +            G+  ELT RE E L+ I++G ++
Sbjct: 118 VRVVAAGDALLAPNITKRL--IAEFSRVTVAPRAPVKGRIGELTERETEVLSLIAQGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  T   +++ I+ K   + R+ A  +A    +V
Sbjct: 176 AEIATRLVVAEQTTKTHVSRILIKLGLRDRTQAAVFAYETGLV 218


>gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 77/242 (31%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + L  +       +  L      L  +   D                GA   L+V
Sbjct: 1   MKKIKVFLVDDHTIFRQGIRLLLKLQSDLEVIGEADN---------------GAQAVLMV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +         + +  +          +   +           +    
Sbjct: 46  QQLNPDVVLMDIAMKGMDGLTATKDILAAS--------PKTKVILLTQHENKEYILPALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +   +     +  +       ++    N ++       +  
Sbjct: 98  IGAAGYVLKRAAADEVVNAIRTTYQGRSFLDPE-------ISDIVVNAYRHGSE--DEYE 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++G T++EIA IL IS  TV+ + +++M+K    ++     YA++  
Sbjct: 149 TLTEREREILILLAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRG 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTAVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F       +      + +         +   
Sbjct: 64  VETTRRICSEP----DP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ E LTGRE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRRL--LDRFAPMLPTTGKEPQHKELERLTGREREVMVLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|330468676|ref|YP_004406419.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811647|gb|AEB45819.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 227

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E + GA    L+         +D  + +   
Sbjct: 4   RVVIVDDQALVRAGFRMVLDSQPDLEVVGEAIDGADALRLLSRVEADVVVMDIRMPTMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +          VL          F T  +         + +         +   
Sbjct: 64  VEATRRLCADRPAGPPRVL------VLTTFDTEADAFAALRAGASGFLLKNVPPEELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +       A    +      +  +LT RE E L  +++G  +
Sbjct: 118 IRVVAQGDSVVAPSITRRL---LDRFAGQLGTTPGEDPRLAQLTEREREILLLVAQGLAN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  + ++  TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 175 AEIAERVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLV 217


>gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 15/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +    +       + E   G     L    +     +D ++      
Sbjct: 9   ILIADDHAIVREGIRAFFAIQPDCSVVGEAESGEDAVRLAAELVPDVILMDLMMPGMDGV 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +          V      +    FH               Y   +     +    
Sbjct: 69  EATRRLKQ--------VSPHSQIIVLTSFHDDEHIFPALRAGALSYILKSIPPDELVEVA 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +         +  +         EL+ RE+E L  I+ G ++ 
Sbjct: 121 RKAVRGESVLHPRVAARV------VRELRGTRSEAPNPFVELSERELEVLRLIAGGLSNT 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++++I+ K     R+ A  +A +  ++
Sbjct: 175 EIAARLTISEKTVKGHLSNILSKLHLMDRTQAAVFAWQQGLI 216


>gi|302557464|ref|ZP_07309806.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475082|gb|EFL38175.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 11/235 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
                   + +  L    + L R       +     +  + E V GA      R      
Sbjct: 4   ADPSSLDRAPIKVLLADDERLVR-SGFKVLIDVEDDIEVVGEAVNGAEAVEQARATRPDV 62

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           +  +        LQ    L    + T            + + 
Sbjct: 63  VLMDIRMPKLDGIQATEQIVRTH------GLQHVRVLILTTYETDAYVFEALQAGASGFM 116

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +   + ++     ++       +        +   +      +   LT RE 
Sbjct: 117 LKDAGPAELLHAIRVVAAGDALLAPRITRRLI---GQFTSQRVAAQAAEDRLSVLTQRER 173

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  + +G ++DEI   L +S  T   +++  M K   + R+  +  A R  +V
Sbjct: 174 EVLALVGQGLSNDEIGAELCLSPATARTHVSHAMVKLGARDRAQLVVVAYRTGLV 228


>gi|257069188|ref|YP_003155443.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256560006|gb|ACU85853.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 64/232 (27%), Gaps = 13/232 (5%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R + V   P      A +I     +   ++        GA+    +R        +
Sbjct: 6   DRPLRIALVDDQPLVRAGFAMVIDSQDDMEVVVQA-----SDGAAAVEELRARRVDVVLM 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    +     +           +    F      +       + +    
Sbjct: 61  DVRMPRKDGIEATAEILAQAPEGRAP-----KIIVLTTFDLDEYVVAAIRAGASGFLLKD 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +     +I       +           +           LT RE E L
Sbjct: 116 AQPEDLLGAIRTVHSGDAVIAPSATRRLLERVVAAPEPEQQDASVLEN---LTEREREVL 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +  G ++ EI   L ++  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 173 TLMGRGFSNQEIGAELFVAEATVKTHVGRVLAKLGARDRVQAVIIAFETGLV 224


>gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 15/241 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S+++    +S L   +        +   +  ++   G SH  L+     ++  L  ++ 
Sbjct: 1   MSYMTTSERQSSLSVELATARTRSLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLI 60

Query: 80  -SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGM 126
            S  P   ++    +   +      R  E   P    L               +     +
Sbjct: 61  ESSLPAAYIKEFDRAHMMRGCPFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAI 120

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFE 185
                  T      R+       +   + +  + E+ ++  +  + + +           
Sbjct: 121 PAGVAMPTIAANGQRLVFWFCG-ERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNA 179

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 180 LSTRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 237

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++  D                GA     VR        +D  
Sbjct: 13  LRVVIVDDQALVRAGFAMILAADGIEVVAEA------ANGAQAVEAVRRTCPDVVLMDIR 66

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 +    F          A   + +       
Sbjct: 67  MPEMDGLEATRRILGGAAATGAP-----RVIILTTFDLDQYVYAALAAGASGFLLKDVSP 121

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   + L+     ++       +      +            +   LT REVE L  +
Sbjct: 122 EQLVGAVRLVRLGDALLAPAITRRL----VERFARTDRGTTLHRELSTLTPREVEVLQLL 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ E+A  L +S  TV  ++A IM K   + R+ A+  A    +V
Sbjct: 178 ATGLSNAELAARLVLSEATVKTHVARIMAKLGLRDRAQAVVVAYETGLV 226


>gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 213

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 17/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA               +D  +      
Sbjct: 7   VLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVARAEELKPDVVLMDVKMPGMDGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +                 L    F      +         Y     D   +   +
Sbjct: 67  DALRRLRELANP--------ARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++  +    +           +  +   G+   LT RE E L  I++G+++ 
Sbjct: 119 RSVHAGHILLQPEVAGALL--------SQEEANSGQGRGGSLTEREREVLGLIADGRSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|32170705|dbj|BAC78370.1| putative two-component system response regulator [Streptomyces sp.
           WA46]
          Length = 222

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 13/226 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P +      ++                   GA               +D  + 
Sbjct: 4   VLIVDDQPLQRYGFHLLLDSVPETDVVGEA-----AHGAEAVRKAAELRPDVVLMDVRMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +  +          R   L    F              + +         
Sbjct: 59  GMDGIEATRRIVAAGG--------RSRILVLTTFDLDEYVHAAIRAGASGFLLKDARPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  G+  +     +I       +    A      ++      +   LT RE E L  I +
Sbjct: 111 LLAGIRAVAVGDAVIAPALTRRLLDEFAQYVPSHRTEPSEDPRLTALTDREREILVAIGK 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+ EIA    +S +TV  ++  ++ K   + R  A+ +A  + +
Sbjct: 171 GWTNGEIAARFVLSESTVKTHVGRVLTKIGARDRIQAVIFAYDHGL 216


>gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           VS    M  + E   G     L R        +D  +     
Sbjct: 4   RVLLADDQNLVRTSFAMLVSSAGDMEVVAEAGTGREAVELARSARADLIVMDIRMPDLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     L    + T    +       + +       A +   
Sbjct: 64  IEATRLIAA------DEDLAGVKVLVLTTYETDEHIVEALRAGASGFLVKDIRPAELLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++         L+A +      +     G   EL+ RE + L  ++ G  +
Sbjct: 118 IRTVAAGESLLSPG--PTSRLIARFLLAPNTAPKPALGGPSELSERERQVLALVARGLNN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 176 AEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 218


>gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 219

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 12/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     L+         +D  +      
Sbjct: 4   VLLVDDQNLIRQGLRALLELESDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIMDGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +  +              L    F                Y         + + +
Sbjct: 64  AATQEIQRN--------FPSVKVLVLTTFDDDEYVKAALQNGAMGYLLKDTPSEELAVAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +    + ++ +      +             +LT RE E L  I+ G  + 
Sbjct: 116 RAVEKGYTQLGPGIVKKLLV---QFQSTPNHTPPAPTNLADLTPREKEVLRLIAAGANNK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EIA  L IS  TV N++ +I+ + + + R+ A   A
Sbjct: 173 EIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208


>gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei DM98]
 gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 14]
 gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 91]
 gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 9]
 gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei B7210]
 gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 7894]
 gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei NCTC 13177]
 gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 112]
 gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei BCC215]
 gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein
           [Burkholderia pseudomallei K96243]
 gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
 gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 668]
 gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106a]
 gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei NCTC 10247]
 gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 305]
 gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei FMH]
 gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei JHU]
 gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei 2002721280]
 gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei]
 gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 406e]
 gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei ATCC 10399]
 gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei S13]
 gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1655]
 gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 576]
 gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei GB8 horse 4]
 gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1106b]
 gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           mallei PRL-20]
 gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia
           pseudomallei 1710a]
 gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
          Length = 230

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 74/227 (32%), Gaps = 12/227 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L A +       +           +G  H  +V            +VS  +P + V    
Sbjct: 2   LSAALPESRDVRTLVETFRQAALQIGYQHHAIVELSGASHPASIDVVSLHYPSEWVEHYT 61

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIR 141
            ++      V +       P                      AG+DN             
Sbjct: 62  RNDYFAIDPVHRAAFRYSTPFSWNDVATANLRERHLLMEAEDAGLDNGISIPLHQPLGRV 121

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISE 199
           + + L           +     LL       F+S            LT RE  CLTW++ 
Sbjct: 122 LLVSLSGTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCRPIPPSVHLTDREQMCLTWVAR 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK+S  IA +L IS+ TV+ +I + M K  T++R+ A   A R  ++
Sbjct: 182 GKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228


>gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 212

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  D +  +                    G     L    
Sbjct: 2   IKVLLIDDHEMVRIGVSAYLSVQDDMEVVGEASN---------------GREGTELALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +         +    +    F    +         
Sbjct: 47  RPDIILMDLVMDEMDGIEATKQIMKAW--------KTAKIIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    ++  +   ++            +         ELT
Sbjct: 99  SSYMLKTSTASEIADAIRATYAGDTVLEPEVTGKM--------MQRLTAKPEKNLHDELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EGK + EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 NRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSKLDVQDRTQAAIYAFQHDLV 209


>gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 209

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 16/219 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +        + E   G      V+ +      +D  +      +
Sbjct: 2   LLVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHFVQKERPDVVLMDVSMPKMDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             +        +Y   ++         F      I       + Y        ++   ++
Sbjct: 62  ATKR-----LKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLVASII 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +              +                       LT RE E L  I++G+++ E
Sbjct: 114 AVHQGNANFHPKVTPAL-------MGRTAVKKEIENPFSMLTKREQEVLREIAKGRSNKE 166

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 167 IAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 229

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 75/226 (33%), Gaps = 14/226 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            +    C       +  +    G  H     + +      +    S++P   +       
Sbjct: 4   EIGSCTCMDELGRMLIDIGHLAGFDHVCYQEYRMSGGTLKNCRTLSNYPEAWLSLYRDRA 63

Query: 95  KDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                 + Q       P+                +     G+++               +
Sbjct: 64  YLTIDPIAQHALSSLMPLIWGDRIFATTEQREFRDEGRIYGLNDGVSFPAHSRHGDVACV 123

Query: 145 MLLFPKGRIILRDRLWEI----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +     +   D   ++     L+A    +  +  +        L+ RE+E L W++EG
Sbjct: 124 SFVRQARALDDGDMPCDVPSWGALVANLMLDACRRLEAVQSDAPCLSTRELEILKWVAEG 183

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ +I+ I+ ++ + V ++I SIM+K    TR  A+  A R  ++
Sbjct: 184 KSTWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGLL 229


>gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 12/226 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     +     +  T  +  + E   G S    V         +D  +     
Sbjct: 3   RVLLVDDQALIRMGFRLLIDSTDDLEVVGEAQDGQSAIEQVAALRPDVVLMDVRMPGVNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +  +              L    F              + +       A +   
Sbjct: 63  IDATARIVETH--------PATRVLVLTTFDLDEYAFAALRAGASGFLLKDAAPADLAAA 114

Query: 144 LMLLFPKGRIILRDRLWE-IGLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           +  +     ++        + L A +   A   +  D    +   LT REVE L  ++EG
Sbjct: 115 VRTVAGGEAVVSARVTRRMLELFAEHLPAAGADRGRDAPHPRLAGLTPREVEVLREVAEG 174

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 175 LSNGEIADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETGLV 220


>gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19]
 gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332]
 gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
 gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae
           PID332]
          Length = 218

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQE--------VIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|224542843|ref|ZP_03683382.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524239|gb|EEF93344.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM
           15897]
          Length = 224

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 77/239 (32%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  + +  + +  +            +                  
Sbjct: 2   IKVMIADDQELIRESLKIVLSTHEDIDVVGTASDGFEVLKCLEK---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D I+       +   MA  E    Y   +    +    F       +      
Sbjct: 46  ----NVVDVILMDIRMPGMDGVMATKEVKSKYPDTKI---IILTTFDDDDFVFSALRYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   ++ +   G +I  D   ++  + +       +  V       L+
Sbjct: 99  SGYLLKGVSMDELYKAVVTVNTGGAMINPDIATKVFSMFSKMQQNNYTIQVDEKDVETLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E + +  +  G ++ EIA  L +S  TV NY++SI+ K   + R+    +AV + ++
Sbjct: 159 KPEWKVIQHVGYGLSNKEIAQKLFLSEGTVRNYLSSILSKLNLRDRTQLAIWAVESGLM 217


>gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 212

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     VS   T    +  +                    G     L    
Sbjct: 2   IRVLFADDHEMVRIGVSSYLTAQADIEVVAEAGD---------------GEEAVTLALSH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +                 +    F    +         
Sbjct: 47  RPDIILMDLVMPKMDGIEATAAIRREW--------PEAKIIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +        I+  +   ++         M + +     +  +LT
Sbjct: 99  TSYMLKTSRAGDIAKAIRDTHAGQSILEPEVAGKL---------MSRMHKKPPAEHEQLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +S G ++ EI   L IS  TV  ++++I+ K     R+ A+ YA + N+
Sbjct: 150 ARELEVLELMSRGMSNQEIGDALYISLKTVKVHVSNILSKLGVHDRTQAVIYAFKENL 207


>gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri]
          Length = 250

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 18/224 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
                     +  +T+ V   ++L L         K D  +  ++P    +    +   K
Sbjct: 18  ACRAYDINQCLSDMTKMVHCEYYLTLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLIK 77

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIGLM 145
           Y  ++        P+   + EN                 G+   +             L 
Sbjct: 78  YDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGMLS 137

Query: 146 LLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
               +       +       I L+     + ++  ++   K + +LT RE ECL W  EG
Sbjct: 138 FAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEG 197

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           K+S +I+ ILG S  TV  ++ +   K  T  R  +I+ A+   
Sbjct: 198 KSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTG 241


>gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 71/230 (30%), Gaps = 13/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           +  + ++     +             G      VR        +D 
Sbjct: 11  AIRIVVADDQMMVREGFSVLLNAMPDMEVVGEA-----VNGREAVARVRELKPDVVLMDI 65

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  ++         R   L    F              + +      
Sbjct: 66  RMPELNGIEATREIVAADG--------RTKVLVLTTFDLDEYVYQALRAGASGFLLKDAS 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++  G+ ++     ++       +    +  A   +      G   ELT RE E L  
Sbjct: 118 ARQLAEGVRVVASGEALLAPSVTRRLITEFSRLAEAPRLPAAAPGAYGELTERETEVLIL 177

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A    +V
Sbjct: 178 IAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 227


>gi|29831224|ref|NP_825858.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608339|dbj|BAC72393.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTEVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F       +      + +         +   
Sbjct: 64  VETTRRICSEPNPP--------KVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ E LT RE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRRL--LDRFAPMLPSAGKEPQFKELERLTDREREVMVLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|288553881|ref|YP_003425816.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288545041|gb|ADC48924.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 211

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 15/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     LV+        +D ++      
Sbjct: 4   VIIVDDHQMVRRGLRFFLDTQSDIEIVGEATNGEEAVKLVQTVKPDVVLMDIVMPVMGGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +     A  +  K    L+         F      I       + Y     D   +   +
Sbjct: 64  E-----ATKQLIKVNPELKIL---VLTSFSDQDYVIPALKAGASGYQLKDIDPEELAETI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L      +    +  +    ++        D    K   LT RE E L  +++G+++ 
Sbjct: 116 RALHAGESKVHSKVMKYVLTRISH------KEDEEEAKVKRLTKREKEVLIELAKGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+A +L I   TV  +I++I+ K     R+ A  +A+R  I
Sbjct: 170 ELADVLHIKEKTVKTHISNILSKLELSDRTQAALFAMRMGI 210


>gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + + V G      V         +D  +     
Sbjct: 3   RVLIADDQQMVRQGFTVLLNTQPDIEVVGQAVDGLDAVAQVAGLAPDVVLMDIRMPELGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 L    F              + +        ++   
Sbjct: 63  IEATARITA--------ATPGIRVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A +     +       +  ELT RE E L  I++G ++
Sbjct: 115 VRVVAAGDALLAPGITRRL--IAEFSRLDARPRTPLRQRVGELTERETEVLALIAQGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIAV L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 173 AEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 215


>gi|239929757|ref|ZP_04686710.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 68/224 (30%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALEVLRSTAVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F       +      + +         +   
Sbjct: 64  VETTRRICAD----TDP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ E LT RE E +  +++G +
Sbjct: 116 IRAVHSGDAVVAPSTTRRL--LDRFAPMLPGTGKQPAHKELERLTEREREVMVLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM
           16992]
          Length = 228

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 74/250 (29%), Gaps = 26/250 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + QQ+ I +  + E   + V            +  L        +   +        
Sbjct: 1   MNEQEQQIRIAIVDDHEMFRAGV------------IATLQPHFDIVGQASDV-----EGS 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             ++         LD  V           +  S       V    +    P      +  
Sbjct: 44  VAMIAQTKPNVVLLDVHVPGGEGGGGAEILMKSRAYSPNTVFLALSVSDSP-----QDVG 98

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSY 176
           +        Y + T     +   +  ++    +         L      +        S 
Sbjct: 99  SVIRAGAQGYVTKTISGDDLISSIKQVYEGYAVFSPKLAGFVLSAFQNGSPAGIGGSASG 158

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+  
Sbjct: 159 PIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTEL 218

Query: 237 IAYAVRNNIV 246
             +A    IV
Sbjct: 219 TRWAADRRIV 228


>gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia
           pseudomallei K96243]
          Length = 234

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            ++   C  S   +       +G  +F                +   +P +       ++
Sbjct: 8   EILNATCKKSLFEQTAYHVRQLGFKNFAY--RHQISGAASSRCMLDGFPAEWRLRYDAAD 65

Query: 95  KDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGL 144
                 V+Q       P+                +     G+         D +     L
Sbjct: 66  YLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISML 125

Query: 145 MLLFPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +            +  +               +      +      +LT RE E L W 
Sbjct: 126 SMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQWA 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 186 GRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 234


>gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 218

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S +  L    + +  +           + + +               
Sbjct: 3   IRVLIADDHAIVRSGLGMLINAQEDMEVVGYAADGKEACEKAWEV--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +    P       A +   +    +Q        +               
Sbjct: 48  RPNVVLMDLSM----PPGENGLTATARLKETAPDIQVL---VLTMHDDEEYLFRVLQAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   +  +      +       +      +            K   LT
Sbjct: 101 AGYILKSAPDLDLITAIRSVNQGMAYLYPSATKSL----IEEFLQMVKNGEEQAKYDILT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++G ++ EIA  L +S  TV ++ A IM K   +TR   + YA++   +
Sbjct: 157 DREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRTRPDLVRYAIKKGWL 215


>gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134]
 gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134]
          Length = 595

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 83/258 (32%), Gaps = 25/258 (9%)

Query: 1   MNFEIQQVNIVLN-REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--- 56
           MN +  Q+++     E    T  +       D L R++ +D        +  L +     
Sbjct: 350 MNLQ-GQLSVYTKPEEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDL 408

Query: 57  --------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                   G     L          +D  +      +  + +        +  ++     
Sbjct: 409 NVVGLAEDGNEAIDLCGRLQPHVILMDLDMQHMDGVEATKKIKQQ-----WPHIRVLIFT 463

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F    + +       + +   + +   +   + L+   G +I +    +I      
Sbjct: 464 T---FQDTEQALESLRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FE 516

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K 
Sbjct: 517 KFDEQKETPESKAAAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKL 576

Query: 229 ATKTRSGAIAYAVRNNIV 246
               +  A+  A+   I+
Sbjct: 577 GVCNKEEAVQKALEIGII 594


>gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 15/231 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +A ++ L+  +     +       G +    V         +D  
Sbjct: 2   IRVLLVDDQTLIRQGIAMLLELEPDLEVVGAVGD-----GRAAIEAVERLHPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 +    F                Y       
Sbjct: 57  MPGMDGVTATRELRRR--------FPDVGVIILTTFDDDEYVFEGLKAGARGYLLKDISS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             +   +  +     +I      ++    L    +       +       LT RE++ L 
Sbjct: 109 EEMAEAVRTVARGEALIQPSIARKVVAEFLRLAVSAPAAPERMTPKSPNALTERELDVLK 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L I+  TV  +I++I+ K   + R+ A+  A +  ++
Sbjct: 169 ALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219


>gi|322391513|ref|ZP_08064982.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145596|gb|EFX40988.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 210

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D     + L         +  + E   GA    +          +D ++      
Sbjct: 3   LLLVDDHQMVRLGLKSYFELQEDVEVVGEATNGAEGISMALELRPDVIVMDIVMPEVNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGARGYMLKTASADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVAAGEFAIEQEVSKKVEYNRNHVELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205


>gi|260886222|ref|ZP_05897485.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC
           35185]
 gi|330839784|ref|YP_004414364.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
 gi|260863941|gb|EEX78441.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC
           35185]
 gi|329747548|gb|AEC00905.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
          Length = 223

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  +    D L  +   +                G          
Sbjct: 3   IKILIADDHALLRQGVKRVLNFEDDLEVIGEAED---------------GQETLARTLVL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++          +      R   +   +  +    +       
Sbjct: 48  QPDVLLLDLNMPGLSGLEVA--------CQLQAAKSRTKIIVLTIHDSDNYVLELLKNGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             Y     + + +   + ++      +       +  G+      N          +   
Sbjct: 100 LGYLLKDVEPSMLIKAIHVVNEGNAFVYPSLAERLFGGVSEDENINEKARTMWRESRSER 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L+ I++G ++ +IA  L +S  TV N++ +I RK     R+ A+ Y +++ I
Sbjct: 160 LTSREMDVLSCIAKGFSNQDIAQALFVSEKTVKNHLTNIFRKLNVNDRTQALIYVLKHKI 219

Query: 246 V 246
           +
Sbjct: 220 M 220


>gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 227

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 65/225 (28%), Gaps = 9/225 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   G     L R        +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEAADGDQALALARAARPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     + A +   
Sbjct: 64  LAATRLISA------DPALDTVRVVMLTTFEVDEYVVRALRAGASGFLGKGSEPAELLGA 117

Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +      ++       +    LA       +       +   LTGRE E L  ++ G 
Sbjct: 118 IRVAHAGEALLSPAATKGLIASFLAQSGHGADERPGAREERLAALTGREREVLVHVAGGL 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 178 SNDEIAGRLQVSPLTVKTHVNRAMAKLGARDRAQLVVTAYETGLV 222


>gi|294812171|ref|ZP_06770814.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440673|ref|ZP_08215407.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324770|gb|EFG06413.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
          Length = 234

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 59/222 (26%), Gaps = 9/222 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPF 84
                +++ +D    W   +       G                 Q    D +V      
Sbjct: 7   DPAPVKVMVVDDHPMWRDAVARDLAEAGFDVVATAGDGAQAVRRAQAAAPDVLVLDLNLP 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L       E       L+              + +         Y   +     +   +
Sbjct: 67  ELPGARVCKELIGSLPGLRVL---VLSASGEHADVLEAVKSGATGYLLKSASTEELIDAV 123

Query: 145 MLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                   +         +G           +      K   LT RE E L  +++G + 
Sbjct: 124 RRTADGDAVFTPGLAGLVLGEYRRLAGEPAPTPGGPEPKAPRLTDRETEVLRLVAKGLSY 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 184 KQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 225


>gi|221633346|ref|YP_002522571.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
 gi|221155795|gb|ACM04922.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM
           5159]
          Length = 246

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  + +     +  L      +  +            +  L              
Sbjct: 27  RIRVLIVDDHDLFREGLRQLIETDPAIEVVGEAANGQDALKMVAEL-------------- 72

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +            +    L   ++      +      
Sbjct: 73  -QPDVVLMDINMPGMDGIRATEAIVQQ--------YRHVHVLMLTMYDDEEYVLHAIRAG 123

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   + +    G  I  D    +  +   +     +     G+D  L
Sbjct: 124 ARSYLVKNSKPEELLRAIHVAAEGGATIDPD----LAPILMREYQRLLTKAPTRGQD--L 177

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+  L  +++G  + +IA  L ++ +TV N ++++ +K   + R+ A+ YA+ + +V
Sbjct: 178 SDRELTMLRLLAQGYNNRQIADALNLAESTVKNNLSALFQKLGVRDRTQAVIYAISHGLV 237


>gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 219

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 12/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     L+         +D  +      
Sbjct: 4   VLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQFHPDVVLMDMRMPIMDGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +  +              L    F                Y         + + +
Sbjct: 64  AATQEIQQN--------FPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +    + ++ +      +             +LT RE E L  I+ G  + 
Sbjct: 116 RAVEKGYTQLGPGIVKKLLV---QFQSTPNHTPPAPTHLADLTPREKEVLRLIAAGANNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EIA  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 173 EIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208


>gi|294630642|ref|ZP_06709202.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292833975|gb|EFF92324.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 223

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFGMVLAAQPDMEVVAEAGDGVEALQVLRETPVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F       +      + +         +   
Sbjct: 64  VETTRRICAGPNPP--------KVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGDLLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       + L                 +   LT RE E +T +++G ++
Sbjct: 116 IRAVHSGDAVVAPSTTRRL-LDRFAPMLPTAGQGPQHKELQRLTEREREVMTLVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 175 GEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|223694801|gb|ACN18083.1| two component transcriptional regulator [uncultured bacterium BLR5]
          Length = 215

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 79/246 (32%), Gaps = 34/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M FE+           E R   V   P     ++ +I     ++    +    + +    
Sbjct: 1   MEFEMDPSA-------EIRIMCVDDHPLMHKGISALIQSQPDMTIVGAVSKAGDAL---- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
               R  +     +D  +      D +  +             +   +   +F    E  
Sbjct: 50  -ATFREKVPDITLMDLRLPDGNGIDTMISILKEH--------PKARIIILTMFEGDVEIQ 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +         ++     ++AA  A+ F   +   
Sbjct: 101 RALKSGACGYILKNMPPEDLLQVIRKVHSG------EKKRLHPVIAATLADHFGEEN--- 151

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E L  ISEG ++ E+   L IS  TV  ++ +I+ K     R+ A++ A
Sbjct: 152 -----LTSRETEVLQLISEGNSNKEVGNRLSISEETVKGHVKNILGKLGANDRTQAVSIA 206

Query: 241 VRNNIV 246
           VR  I+
Sbjct: 207 VRRGII 212


>gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 209

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 28/228 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     LA +I     +             GA    L          +D  
Sbjct: 7   IRVLIVDDHPVVRSGLAMIIQYAKGIETVGEAST-----GAEAVALFCQHRPDVVLMDLK 61

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  + +     +           +    +    +           Y   +   
Sbjct: 62  MPEMGGVEATQAILQECPN--------AYIIVLTTYDGDEDIYRGLQAGARGYLLKSVSR 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  G+  ++   + I  +    +                      +LT RE + L  +
Sbjct: 114 EELIDGIKQVYAGRKYIPAEVGARLA---------------ERMSSPQLTERERQVLMLM 158

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EGK++ EIA+ L IS  T+  ++  I+RK     R+ A+  A++  +
Sbjct: 159 CEGKSNQEIALTLQISEGTIKFHVNGILRKLDVCDRTQAVLVALKRGM 206


>gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002]
 gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC
           7002]
          Length = 231

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 12/229 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            TS +  L    D L R+  L   +     +    E   G +   L+    F    LD  
Sbjct: 1   MTSPLKVLLIEDDELFRL-GLATRLQQEALLEITAEAEDGETALDLITKQEFDIIILDVG 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +   +      +L   +     + + L             YC    D 
Sbjct: 60  LPGIGGVETCRQIKQQQPQL--PILVLTSHSQPTLINRL------IEAQAQGYCLKGVDA 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + +  +             +I                   +D  LT RE E L  I
Sbjct: 112 ESLILAIQSIAAGASWWDAQATQQIRAQFQQPMAEMPR--SVPAQDNPLTQREGEILALI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK++ EIA  L I+ +TV  ++ +I++K   + R+ A+  A+R+ ++
Sbjct: 170 ANGKSNSEIAETLYIAASTVRVHVHAILQKLEARDRTQAVVIALRHGLI 218


>gi|21224676|ref|NP_630455.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3367769|emb|CAA20094.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 222

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 60/227 (26%), Gaps = 13/227 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               V   P +      ++                   G                +D  +
Sbjct: 3   TVLVVDDQPLQRYGFHLLLDSVPETDVVGEA-----AHGVEAVRKAAELRPDVVLMDVRM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +  +          R   L    F              + +        
Sbjct: 58  PGMDGIEATRRIVAAGG--------RSRVLVLTTFDLDEYVHAAIRAGASGFLLKDARPD 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  G+  +     +I       +    A      +       +   LT RE E L  + 
Sbjct: 110 ELLAGIRAVASGDAVIAPALTRRLLDEFAQYVPAHRGDAAGDPRLVSLTDREREILVAVG 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G T+ EIA    +S +TV  ++  ++ K   + R  A+ +A  + +
Sbjct: 170 KGWTNGEIAARFVLSESTVKTHVGRVLAKIGARDRIQAVIFAYDHGL 216


>gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 221

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E + GA    ++         +D  + +   
Sbjct: 4   RVMIVDDQALVRAGFRMVLGSQPDLEVVGEAIDGADALRVLDRVEADVVVMDLRMPTMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +          VL          F T  +         + +         +   
Sbjct: 64  VEATRRICAGSAGGGPRVL------VLTTFDTEADAFAALRAGASGFLLKNVPPEELMAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +       A           +  +LT RE E L  +++G ++
Sbjct: 118 IRVVAQGDSVVAPSITRRL---LDRFAGQLGPAPTADPRLAQLTDREREVLLLVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  + ++  TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 175 AEIAARVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGLV 217


>gi|314980198|gb|EFT24292.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|315088072|gb|EFT60048.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
          Length = 218

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 68/241 (28%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +     S    L    D +  +  +   +     +  +             
Sbjct: 3   DPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEVSNGLEALDVLRRM------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +  S  D           L    F            
Sbjct: 50  --PVDVALMDIRMPQMDGVEATRRITASPLD--------TKVLILTTFDLDEYVYAALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++       +  L      +         +   
Sbjct: 100 GASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRL--LDHVVPTLPNDPKAADKRLSV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    +
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production
           enhancer protein) [Paenibacillus polymyxa E681]
          Length = 217

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 72/223 (32%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     +  + +   G                +D  +    P
Sbjct: 3   RILVVDDHVVVRSGLMALLDGKNGIKVVGDAADGDEAIRKAVELQPNVVLMDFSM----P 58

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                  A +E  K     +        +               + Y   +     +   
Sbjct: 59  PGKDGLTATTELKKQLPDTEVL---ILTMHDDEEYLFRAIQAGASGYILKSAPHEELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    +  ++ Y        +   G    L+ RE E L+W+++G  +
Sbjct: 116 IQSVAEGSAYLYPNATKRL--MSEYL--DKIKQEGIAGPYESLSEREKEILSWVAKGYAN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV ++ +++M K + KTR   + +A++  ++
Sbjct: 172 KEIAEHLVISVKTVESHKSNLMEKLSLKTRPELVKFALKKGLL 214


>gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 20/224 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D++    V   P   + L  ++     +     + +     G      +  +      +D
Sbjct: 3   DKKTVVIVEDDPGLREQLLLVLKSARDIECLYAVKS-----GEEAVRQIPTNPPDVVLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + V  +     D           +   V+              + Y   + 
Sbjct: 58  IQLPGMSGIECVAVLKKRLPDME--------FIMLTVYEDAERIFRALKAGASGYLVKSS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++   +  +   G             +A      F+       +  +L+ RE E + 
Sbjct: 110 APEKLFEAIRDVHSGGAQFSAH-------IARRVVQYFRGPTKPVDESEKLSPREGEVIE 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++ G    EIA  LGI   TV  Y+ +I  K   K R+ A+A 
Sbjct: 163 LLASGYIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVAK 206


>gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 219

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 63/222 (28%), Gaps = 15/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D           +     +  L E   GA    L          +D  +      
Sbjct: 7   LLLADDHPVVRKGTRELLEAEADLRVLGEASSGAEVVALAAQLRPDIVLMDMSMPDMTGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +   +         R + L    +                Y         +   +
Sbjct: 67  EATRRIKAGQG--------RVSVLVLSSYDDDAYVFAALEAGAAGYLLKEASEDELLRAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++      ++       A              +L+ RE+E L   + G ++ 
Sbjct: 119 RAVAAGESVLHPSIARKV------MARFSAQAPAEMDLTEDLSPRELEVLRAAARGGSNK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LGIS  TV  ++ ++  K    +R+ A+   +R   V
Sbjct: 173 EIARALGISPRTVQVHLGNVFSKLNVGSRTEAVLAGIRRGWV 214


>gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes
           DSM 40736]
          Length = 213

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 68/220 (30%), Gaps = 17/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA               +D  +      
Sbjct: 7   VLLVDDHQVVRRGLRTFLEVQDDIRVVGEAADGAEGVDRAEELKPDVILMDVKMPGMDGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +   +             L    F      +         Y     D   +   +
Sbjct: 67  DALRRLRELDNP--------ARVLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++  +    +           +  +    +   LT RE E L  I++G+++ 
Sbjct: 119 RSVHAGHILLQPEVADALL--------SQEEANSGPARAGSLTDREREVLGLIADGRSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210


>gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 218

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  +L  +       V  L         +           +   L               
Sbjct: 1   MRCLLVDDHTLFRQGVRRLLEGESDFEVVGESPDAGDAVEKAREL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +     F+  R +  +              LF  ++      +       
Sbjct: 46  RPDVVLMDIGMPGLSSFEAARHIKKNR--------PETKILFLTMYEDEDYLVQCLEVGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +  ++  G+ +    L ++                   +   LT
Sbjct: 98  AGYVLKDTPAPQLVTAVRDVYKGGKYLSSQVLGKL----VEDFRARVRDAKLRPRISTLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++EG +  EIAV+LG+S  TV  +  ++MRK     ++  + YA++  I+
Sbjct: 154 PREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDIHNKAQLVTYAIQKKII 212


>gi|297562533|ref|YP_003681507.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846981|gb|ADH69001.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 222

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L R +      +D  +     
Sbjct: 3   RVLLADDQALVRAGFRALLDSAPDIEVVAEAADGEAAVRLARAERPDVVLMDIRMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L+    +    F              + +     +   +   
Sbjct: 63  LAAAGRILA------DPALEATRVVILTTFDLDEYIFEALRAGASGFLVKDTEPGDLLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A Y      S      +   LT RE E +  +  G ++
Sbjct: 117 VRVVHGGEALLSPGITRRL--IADYA-RRPPSAPDPSVRLNGLTEREREVVALVGGGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  T   +++  M K   + R+  +  A    +V
Sbjct: 174 EEIAAHLVLSPATAKTHVSRAMVKLGVRDRAQLVVIAYETALV 216


>gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens
           Pf-5]
 gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family
           [Pseudomonas fluorescens Pf-5]
          Length = 252

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 77/247 (31%), Gaps = 28/247 (11%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----DWP 83
             ++    ++  +           L   +G    +     +  +Q  + I+ S    + P
Sbjct: 4   RLAEFDTHLLSGNSLHERMTGTMTLASELGFDALVYDYSPVPFDQAGELIIPSAMVCNTP 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPP-----------------AG 125
            D +             V Q   +   P   +  PE  T                     
Sbjct: 64  RDWLELWCDQGYYHIDPVQQVALDSSSPFIWSYKPEAETVLRQALGQQHAPVSSYLHHHQ 123

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG----LLAAYQANMFKSYDVHWG 181
           M +               L  L      +    L ++     LLA               
Sbjct: 124 MAHGMTVPIHLPRGGFASLTGLRSGNATVALQDLQQVQGHFTLLAHALQEHLYPQLSKCV 183

Query: 182 KDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +  +LT RE ECL W +EG TS EIA  L  S+ T+N ++ S M K   + R  A+  
Sbjct: 184 RSYPVDLTRRERECLKWAAEGMTSGEIAERLQRSQATINLHLTSAMHKLGARNRVQAVVR 243

Query: 240 AVRNNIV 246
           AV   ++
Sbjct: 244 AVHYRLL 250


>gi|297196109|ref|ZP_06913507.1| two-component system regulatory protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719414|gb|EDY63322.1| two-component system regulatory protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 222

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L R  L     +D  +     
Sbjct: 3   RVLLVDDQRLLRSGFRALLDLEDDIEVVGEAGDGLEGVALARQHLPDIALIDIQMPVVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +                +             
Sbjct: 63  IEATRRIAA------DPALAGVHVVILTNYGFDEYVFEALRAGAAGFLVKDIVPEDFLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++      ++  +  Y      +   +     ELT RE E +  +++G ++
Sbjct: 117 VRVAARGDALLAPSITRKL--IDRYVNQPLHTGSGNGTGLEELTNREREAVALVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA  + IS  T   ++   M K   + R+  +  A  + +V
Sbjct: 175 EQIADRMVISPLTAKTHVNRAMAKLHARDRAQLVILAYESGLV 217


>gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 209

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +V  +      +D I+ +    +  + +     D           +    F+  
Sbjct: 36  GFEGVEIVLKEKPDVVLMDLIMENGTGIEATKLIINDYPD--------CKVIILTSFYDD 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +           Y   T     I   +        +I      ++        N     
Sbjct: 88  EKVFPAIEAGAFSYILKTSTANEIANAIKKAASGENVIEPKVASKMMT------NFQSQK 141

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE E L  I EG T+ EI   L I   TV  ++++I+ K     R+ A
Sbjct: 142 KKLHD---DLTEREREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSNILSKLDVHDRTQA 198

Query: 237 IAYAVRNNIV 246
             Y  RN ++
Sbjct: 199 AVYVHRNKLL 208


>gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 220

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 62/223 (27%), Gaps = 17/223 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + L  ++     +             G     L          +D  
Sbjct: 2   IRVLLVDDQGIIREGLRSLLEAKPDLEIVGEAEN-----GKLAVELALKLKPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +A  + +           L    F                Y       
Sbjct: 57  MPIMDGVAAMRSLAEQQPEI--------KVLVLTTFDDDEYVTQAMESGAKGYLLKDTPS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  ++     +      ++        +     +       +LT RE+E L  I
Sbjct: 109 DELAQAIRAVYKGYTQLGPGLFEKV----MAARSKASRDEPLPDNLQDLTPRELEVLRLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +G ++ EIA  L IS  TV N+++SI+     + R+     A
Sbjct: 165 GKGYSNREIAQELFISERTVKNHVSSILSSLNLRDRTQVALLA 207


>gi|163759735|ref|ZP_02166820.1| putative two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162283332|gb|EDQ33618.1| putative two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 217

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 63/237 (26%), Gaps = 29/237 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            IV+  +       V+     +D    +    C                   F LV   L
Sbjct: 6   TIVVVDDHPLFREGVARSLNEADFFEVVGECGCAED---------------AFDLVETHL 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +         R                   +   V               +
Sbjct: 51  PDIVCLDISMPGGGINAARR---------INATFPTVKIVMLTVSEADENVSDALEAGAS 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A++   L  +      I  D    +  +A        +          LT 
Sbjct: 102 GYILKGIGAAQLVEALSSVASGQSYISPDLAVRLLTVATN-----NTTKKPEHPIDNLTR 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  ++ G ++ E+   L +   T+ +Y+ +I++K   + R  A   A    +
Sbjct: 157 REEQILQLVANGLSNKEVGAALDLQEKTIKHYMTNILQKLHVRNRVEAALLARDRGL 213


>gi|50841545|ref|YP_054772.1| two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289424302|ref|ZP_06426085.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427423|ref|ZP_06429136.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129584|ref|YP_003580247.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|50839147|gb|AAT81814.1| two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289154999|gb|EFD03681.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289159353|gb|EFD07544.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377074|gb|ADE00929.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313764963|gb|EFS36327.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771147|gb|EFS37113.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792510|gb|EFS40596.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803511|gb|EFS44693.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806915|gb|EFS45413.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811827|gb|EFS49541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814163|gb|EFS51877.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815476|gb|EFS53190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817698|gb|EFS55412.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821475|gb|EFS59189.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824580|gb|EFS62294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826251|gb|EFS63965.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829041|gb|EFS66755.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313832822|gb|EFS70536.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839682|gb|EFS77396.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916271|gb|EFS80102.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917541|gb|EFS81372.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921874|gb|EFS85705.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926277|gb|EFS90108.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314955212|gb|EFS99617.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959216|gb|EFT03318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961718|gb|EFT05819.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964222|gb|EFT08322.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969024|gb|EFT13122.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314975255|gb|EFT19350.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977670|gb|EFT21765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314985145|gb|EFT29237.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314990454|gb|EFT34545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078871|gb|EFT50889.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315081685|gb|EFT53661.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083141|gb|EFT55117.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086668|gb|EFT58644.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315097105|gb|EFT69081.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099710|gb|EFT71686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102251|gb|EFT74227.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315107664|gb|EFT79640.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|315109807|gb|EFT81783.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327332558|gb|EGE74293.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327333731|gb|EGE75448.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327334616|gb|EGE76327.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327444410|gb|EGE91064.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327446663|gb|EGE93317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448894|gb|EGE95548.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327454307|gb|EGF00962.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456372|gb|EGF03027.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457356|gb|EGF04011.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328756067|gb|EGF69683.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757917|gb|EGF71533.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328758912|gb|EGF72528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328759757|gb|EGF73353.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
 gi|332674453|gb|AEE71269.1| two-component response regulator [Propionibacterium acnes 266]
          Length = 218

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 67/241 (27%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +     S    L    D +  +      +     +  +             
Sbjct: 3   DPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRM------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +  S  D           L    F            
Sbjct: 50  --PVDVALMDIRMPQMDGVEATRRITASPLD--------TKVLILTTFDLDEYVYAALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++       +  L      +         +   
Sbjct: 100 GASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRL--LDHVVPTLPNDPKAADKRLSV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    +
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090]
 gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02]
 gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11]
 gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679]
 gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035]
 gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2]
 gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional
           response regulator [Neisseria gonorrhoeae FA 1090]
 gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945]
 gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae
           1291]
 gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae
           MS11]
 gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria gonorrhoeae F62]
 gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 218

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|291302714|ref|YP_003513992.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571934|gb|ADD44899.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 218

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E   +    L    D +  +                    G +   L R +
Sbjct: 2   IRVALAEDQELVRTGFKLLLDSEDDIVVVGEAAN---------------GGAAVALAREE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       LV  +  ++       L     +    F    +         
Sbjct: 47  KPDVLLMDIQMP------LVDGLTATKLIVGDPDLDGVRVVMLTTFAADAKLFAALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   +  G+ ++     ++       +        +   +          LT
Sbjct: 101 SGYLVKDAEPHELLHGVRVVARGDGLLSASVTRRV------IESFADTTATDAPDIDGLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  L +S  T   ++   M K   + R+  + +A    +V
Sbjct: 155 DRETEVLGLVARGLSNAEIAGRLSMSPATAKTHVNRTMTKLGARDRAQLVIFAYETGLV 213


>gi|148977018|ref|ZP_01813664.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|145963678|gb|EDK28939.1| response regulator [Vibrionales bacterium SWAT-3]
          Length = 210

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +S L +  D    +                    G     L   + 
Sbjct: 5   KVMLVDDHPLMRRGISQLLSFEDEFEVIAEASN---------------GTEAVALAHEEE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +                 +   V  +  +         +
Sbjct: 50  PDLILLDLNMKGMSGLDTLKALRTDGSS--------ANIVILTVSDSPADIEAIVKAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +                                +LT 
Sbjct: 102 GYLLKDTEPDELIELLKQAHSGDKAYSSVVAR-----------YLNDAGSRNDIFDQLTE 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 REMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 198

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 19/213 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
               L            + E   G     + R        +D ++        +R +  +
Sbjct: 2   VRQGLATYFELQDDFEVVGEAADGRQAVEMTRTLAPDVVLMDLMMPGLDGLSALRELKGT 61

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                         +    F  L + +         + +   + A +   +  +      
Sbjct: 62  G----------AKVIMLTSFLDLEKAMACIEEGALGFLTKDIEPADLVDAIRAVHRGEPR 111

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +  + +  + +  A              K   LT RE++ L  ++ G T+ EIA  L IS
Sbjct: 112 LHPEVMKRLMVRTAQPHQ--------PSKRDLLTPRELDVLRALAHGLTNREIAERLVIS 163

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  +I+SI+ K     R+ A  +AVR  +V
Sbjct: 164 ETTVKTHISSILSKLQLTDRTQAALWAVREGLV 196


>gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
 gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera
           DSM 4582]
          Length = 222

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
           F ++   +++  +       +  L     L   +                    G     
Sbjct: 13  FMMKHYQVMIVDDHPLMRRGIKQLLGLDPLFTVIAEASN---------------GNDAIA 57

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD  +      D ++ M     D           +   V     +    
Sbjct: 58  LAAQHTPDVILLDLNMKGLSGLDTLKAMRHDGVD--------ARIIVLTVSDARNDVYAL 109

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +  ++   + L      +I               A+   S       
Sbjct: 110 IDAGADGYLLKDSEPEQLLTSIRLAAEGENVISDA-----------VADYLSSRSEQHDP 158

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE++ L  ++ G ++ ++AV L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 159 FADLTERELDVLQEVARGMSNKQVAVQLHISEETVKVHIRNMLRKLDVRSRVAATVMYLE 218

Query: 243 N 243
           +
Sbjct: 219 H 219


>gi|269128686|ref|YP_003302056.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313644|gb|ACZ00019.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 66/223 (29%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    L+R        +D  +     
Sbjct: 3   RVMLVDDQELVRTGFRMVLDAQPDIEVVAEAGDGAQVVDLLRAHTTDVVLMDVRMPRVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +            +RP  +    F              + +       A++   
Sbjct: 63  IEATRRIGAL------PAERRPRVIILTTFDLDEYAFAAIKAGASGFLLKDAGPAQLIEA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       + L                G    LT RE E L  ++ G ++
Sbjct: 117 IRAVHSGDAVVAPSTTRRL-LDRFAVHLPDAEQQSAAGALAALTAREREVLHLVARGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R  A+ +A    +V
Sbjct: 176 AEIAGRLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGLV 218


>gi|319441809|ref|ZP_07990965.1| putative NarL family two-component response regulator
           [Corynebacterium variabile DSM 44702]
          Length = 228

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 71/247 (28%), Gaps = 28/247 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + +  +        + L      +  +           ++  L            
Sbjct: 1   MGDITVTVVDDQAMVRQGFAALLGAQPDITVVGDAADGAQAVEQVTRL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  +  D    ++          F           
Sbjct: 49  ---HPDVVFMDVRMPVMDGLEAARRILSAGLDPAPKIV------MLTTFDLDDYVFEALQ 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGK 182
              + +         +   + L      ++       +    +A   A   +  +    +
Sbjct: 100 MGCSGFLLKDAPAGELVRAVRLAVTGEALLAPSVTKRLIEDAVAKRPAGRIRGGESAGEQ 159

Query: 183 DF-----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  I+ G+++ EIA  L IS  TV  ++  +++K + + R  A+
Sbjct: 160 AALKALRSLTPREHEILEQIATGRSNQEIAGTLFISEETVKTHVRKVLQKLSLRDRVQAV 219

Query: 238 AYAVRNN 244
            +A  N 
Sbjct: 220 VFAYENG 226


>gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 224

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 10/223 (4%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-------RWDLFQEQKLDSIVSSDWP 83
           D   R++  D  +     +  L E +G    L+           L  E + D ++     
Sbjct: 5   DKPLRILVADDHLVVRKGLRLLLEEMGEGFVLVGEAVDGKEAIRLTDELQPDVVLMDIRM 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +    A+ +    +        +    +      +         Y         +   
Sbjct: 65  PGMDGLEAIEQIHWSWP---HVAVVILTTYTDDEALLRGLQAGACGYLLKETSAETLFHA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++  + +  I                      ELT RE   L  ++ G+ S
Sbjct: 122 IRTAARGEFLLQPEIMARILAQTHRSVPNSSPGAPSGNSTVELTERERAILIAVAHGERS 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S  TV  ++ +I  K    +R+ A+A A+   ++
Sbjct: 182 KEIAQHLGVSERTVKAHLTNIYTKLNVDSRASAVASALERGLL 224


>gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 63/223 (28%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  + E   GA    L          +D  +     
Sbjct: 3   RVLVVDDQFLVRSGLVALLRAAPGMEVVGEAADGAEAVALAAKTRPDVILMDIRMPGMTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F                +        R+   
Sbjct: 63  IEATRRILA------DAADPAPRILILTTFDLDEYVYGALRAGAAGFLLKDAGPERLLAA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +        +      +A+   +          LTGREVE L  ++ G T+
Sbjct: 117 VTAVHGGDSLFAPVVTRRLVEAFTERADTPPAPADPPADLRALTGREVEVLRLVARGLTN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E A  L IS  TV  ++   M K    +R+ A+  A  + +V
Sbjct: 177 AEAADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAYESGLV 219


>gi|302540643|ref|ZP_07292985.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458261|gb|EFL21354.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 227

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 60/226 (26%), Gaps = 8/226 (3%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            +  +    D           +     M  + E   G     L          +D  +  
Sbjct: 1   MIIRVLLADDQALLRATFRILIDSEPDMTVVAEATDGQEALDLALVHEPDVVLMDIRMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                    +           +     L    F              + +         +
Sbjct: 61  TDGLTATMDICSR------PEMSTTRVLILTTFENNENVAKALRAGASGFLGKDVGPEFL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+  +     ++       +        +          +   LT RE E +   + G
Sbjct: 115 LSGIRTVAAGDSLLSPTATRTLITRFLATPDTDTPL-APPERLAALTEREREVMALAAHG 173

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ EIA  L +S  TV ++I   M K   + R+  +  A ++ +V
Sbjct: 174 KSNAEIADQLVVSPLTVRSHIQRAMTKLDVRDRAQLVVIAYQSGLV 219


>gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 212

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 22/224 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V         L  ++ LD T+        LT         +          LD  + 
Sbjct: 7   VMLVDDHSVVRQGLRLLLELDDTMEVCGEAETLTGA-----VAVCAEVAPDVILLDFKLP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                     +             +   +    +              + Y     +   
Sbjct: 62  DGDGIIGCGNLKRQ--------FPQVKIIILTAYADDHLVTETIKAGADGYLLKNVESEE 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +     ++       +        +  KS      K+  LT +EV+ L  IS 
Sbjct: 114 LINTIQAVHKGQSVLDPSVTEIL-------FDNIKSQQPK--KEHNLTPKEVQILDMISV 164

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           GK + EIA I+ IS  TV NY+++I++K     R+ A +Y +RN
Sbjct: 165 GKANKEIAEIMKISDKTVRNYVSNILQKLNVSNRTEAASYWMRN 208


>gi|314987054|gb|EFT31146.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
          Length = 218

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 67/241 (27%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +     S    L    D +  +      +     +  +             
Sbjct: 3   DPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRM------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +  S  D           L    F            
Sbjct: 50  --PVDVALMDIRMPQMDGVEATRRITASPLD--------TKVLILTTFDLDEYVYAALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++       +  L      +         +   
Sbjct: 100 GASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRL--LDHVVPPLPNDPKAADKRLSV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    +
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 243

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 75/237 (31%), Gaps = 22/237 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE--QKLDSIVSSDWPFDLVR 88
           +  + +I       W  R++ L   +G     L      +   +   +   S++  D + 
Sbjct: 5   ERFSDLISCSSQEIWRNRVFKLGCDLGYEQTRLAILPDPRAPIEAEHAFQQSNYSADWLN 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +                P+  +                   G+ +          
Sbjct: 65  KYTAEKLHHVDPTFSHCISKSTPLIWSPKIFSAQKQKEMYEEACGYGVKSGVTLPIHGAK 124

Query: 139 RIRIGLMLLFPKGRI--ILRDRLWEIGLLAAYQ-------ANMFKSYDVHWGKDFELTGR 189
                +  +          RD    +  LA ++           K           +T R
Sbjct: 125 GELGIVCFVSDTKPDKRFHRDANHHLPELACFRDFILESSLQFMKPSRQVENP-ISVTHR 183

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+ECL W + GK+S EI  IL  +  TVN + ++I RK +T +R  AI  A+   ++
Sbjct: 184 ELECLKWSASGKSSWEIGHILNCTEATVNFHFSNIRRKFSTTSRQQAIVKAISLGLI 240


>gi|239942209|ref|ZP_04694146.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988676|ref|ZP_04709340.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445663|ref|ZP_06585053.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348610|gb|EFE75514.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 226

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 16/226 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   GA    ++R        +D  +     
Sbjct: 6   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAIEMLRSTAVDVVLMDVRMPRLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   +          P  L    F       +      + +       A +   
Sbjct: 66  VEATRRICAQQ----DP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPAELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEG 200
           +  +     ++       +      + +          K+     LT RE E +  +++G
Sbjct: 118 IRSVHSGDAVVAPSTTRRL----LDRFSPMLPSGEKEPKNKHVGKLTEREREVMLLVAQG 173

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 LSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETGLV 219


>gi|21221817|ref|NP_627596.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787004|ref|ZP_05525435.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770897|ref|ZP_06530275.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|4585835|emb|CAB40929.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701096|gb|EFD68525.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQVLRSTAVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +             +        F       +      + +         +   
Sbjct: 64  VETTSRI------CVDPNAPKVL--ILTTFDLDEYAFSALKAGASGFMLKDVPPGELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ + LT RE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRRL--LDRFAPMLPATGQEPRQKELQRLTEREREVMVLVAQGMS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
 gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 215

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     S  S +    + +  +                    G   + +V   
Sbjct: 1   MKIVIADDHAVVRSGFSMILNYQEDMEVVATAAD---------------GIEAYAMVAKH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +   K  +       L   ++              
Sbjct: 46  RPHVLLMDLSMP-----PGESGLIATG--KISSEFPETKILILTMYDDDDYLFHVLKNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   + ++   G  I       +      +     S          L+
Sbjct: 99  SGYVLKNAPDDELISAIRMVHKGGTYIHPQMATSL----VREFIKKDSESAEQDPFNSLS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + EIA  L +S  TV  + A IM K   K+R   + YA++  ++
Sbjct: 155 QREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPELVEYALKKKLL 213


>gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 224

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 12/225 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +         +     +  + E V G     L          +D  +      
Sbjct: 5   VLIADDQVMVREGFSVLLGAMPGIEVVGEAVDGREAVELTARLAPDVVLMDIRMPRLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +  S              L    F              + +        ++   +
Sbjct: 65  GATREIVASP--------AGTKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLAEAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGK 201
            ++     ++       +    A                G   ELT RE E L  ++ G 
Sbjct: 117 EVVARGEALLAPSVTRRLITEFARVPETVLRGPAPPRTGGAYGELTERETEVLVHVACGL 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L ++ +TV  +++ I+ K   + R+ A  +A  N +V
Sbjct: 177 SNQEIAAKLYVAESTVKTHVSRILVKLGLRDRTQAAVFAYENRLV 221


>gi|302545491|ref|ZP_07297833.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463109|gb|EFL26202.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 237

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 61/223 (27%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V+    M  + E   G     L R        +D  +     
Sbjct: 16  RVLLADDQTLVRSAFAMLVASARDMEVVGEAGTGRQAVELARTARADLVVMDIRMPDLDG 75

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     L    + T    +       + +         +   
Sbjct: 76  IEATRRIAA------DEDLAGVKILILTTYDTDEHIVEALRAGASGFLVKDTRPTELLDA 129

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +                       L+ RE + L  ++ G  +
Sbjct: 130 IRTVAAGESLLSPGPTARLIARVLRLPATPPPGTPSPAALSALSERERQVLALVARGLNN 189

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E A  LG+S  T   +++ IM K   + R+  +  A  + ++
Sbjct: 190 TEAAQALGLSPLTTKTHVSRIMGKLGARDRAQLVITAYESGLI 232


>gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18]
 gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140]
 gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18]
 gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1]
 gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1]
 gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
 gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae
           PID18]
 gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae
           PID1]
          Length = 218

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLAECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|39998319|ref|NP_954270.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985265|gb|AAR36620.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
 gi|298507253|gb|ADI85976.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 229

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 14/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   D L  ++             +     G+     V         +D  +
Sbjct: 6   RVMIVDDHPLFRDGLKGLVSRSADYQAVGEAGS-----GSEALRQVEKCRPDLITMDISL 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D  R +      +    ++       P +  + +         + Y       A
Sbjct: 61  PDMSGIDAAREI-----HRVAPHVKILMVSMHPRYEFIAD---AFKAGASGYVVKEATSA 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R+   +  L      +      E+     +  +          +   LT RE + +  I 
Sbjct: 113 RLIQAMDALSRGEFFLDGQVSQEVVQ-RIFSGSQADGGGSADERYTLLTPREQQVMRMIV 171

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG TS +IA  L ++  TV N+  ++MRK    ++   + YA R  ++
Sbjct: 172 EGATSRQIAESLELTLKTVENHRTNLMRKLQVHSKLELVRYAARLGLI 219


>gi|87118413|ref|ZP_01074312.1| putative two component system response regulator [Marinomonas sp.
           MED121]
 gi|86166047|gb|EAQ67313.1| putative two component system response regulator [Marinomonas sp.
           MED121]
          Length = 226

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L+ ++     +             G       +  +     +D  
Sbjct: 3   IRIVIVDDQALVRSGLSMILDHQSDIEVVAEC-----ANGLEAIEAAKKYIPDLILMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +      +   V+          F              + +       
Sbjct: 58  MPEMDGLSATSAILGDLNIQTRIVI-------LSTFDLDEYIYRALREGASGFILKDTPP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++   G ++      ++       A +  S+    G    LT RE E L  +
Sbjct: 111 DELVAAVHVVAQGGALLTPSITKKLI---GAFAELKPSHTNVTGHIDRLTTREKEILKNL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G  + EIA  L I  +TV  +++S++ K   + R+ A+ +A  N ++
Sbjct: 168 ALGFNNSEIASRLFIGESTVKTHVSSLLSKLELRDRAQAVIFAYENGVI 216


>gi|86146693|ref|ZP_01065014.1| response regulator [Vibrio sp. MED222]
 gi|218676377|ref|YP_002395196.1| Nitrate/nitrite response regulator protein homolog [Vibrio
           splendidus LGP32]
 gi|85835540|gb|EAQ53677.1| response regulator [Vibrio sp. MED222]
 gi|218324645|emb|CAV26216.1| Nitrate/nitrite response regulator protein homolog [Vibrio
           splendidus LGP32]
          Length = 210

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +S L +  D    +                    G     L   + 
Sbjct: 5   KVMLVDDHPLMRRGISQLLSFEDEFEVIAEASN---------------GTEAVALAHEEE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +                 +   V  +  +         +
Sbjct: 50  PDLILLDLNMKGMSGLDTLKALRTDGSS--------ANIVILTVSDSPADIEAIVKAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +                        D       +LT 
Sbjct: 102 GYLLKDTEPDELIELLKQAHSGDKAYSSVVAR-----------YLNDADSRNDIFDQLTE 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 REMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator
           [Exiguobacterium sibiricum 255-15]
 gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family
           [Exiguobacterium sibiricum 255-15]
          Length = 209

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E   + VS   +    +  +                    G +   L    
Sbjct: 2   IRVLLVDDHEMVRAGVSAFLSTQPDIEVVAEASD---------------GQAGAELALKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 L    F    +         
Sbjct: 47  RPDVVLMDLVMEPVDGVEGTRLIRKEW--------PEAKILVVTSFLDDEKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +        ++      ++           +    H   D  LT
Sbjct: 99  MSYVLKTASAFEIAEAIRKTADGQSVMAAQVTGKM-------MERLRKPTSHLHDD--LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G  + EIA  L IS  TV  ++++I+ K     R+ A+ YA ++NIV
Sbjct: 150 EREQEVLQLMARGMANQEIADELFISLKTVKTHVSNILSKLDVVDRTQAVVYAFKHNIV 208


>gi|57234766|ref|YP_181176.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57225214|gb|AAW40271.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 232

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  +++  +       +S L ++   +  +                    G     +V
Sbjct: 1   MAKTKVLIADDHAVLREGMSRLLSQEKDIEVVGEAGD---------------GQEAVDMV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +  + +  +              L    +  +   +    
Sbjct: 46  GQFKPDVVLMDIVMPRLTGVEATKLIKKNNPSTC--------ILILTAYSDIRYILGLLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +     I   +  +     ++      ++        N+ K  D    +  
Sbjct: 98  AGASGYLLKSAKSDEIVGAIRAIKAGESVLDSIATRKL---LERVVNVSKETDEDKVR-G 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L   S+G ++ EIA  L +S  TV  ++++I  K     R+ AI    R  
Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLELSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 245 IV 246
            V
Sbjct: 214 YV 215


>gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 219

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 72/241 (29%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  + E     V       D +  +                    G        
Sbjct: 3   EPITVLLVDDHELVRRGVRAFLETQDDIVVVAEAAD---------------GEEAVRCAA 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++      +  R +  S          R + +    +H           
Sbjct: 48  EHAPDVALMDLVMPGMDGVEATRRLVASS--------PRTSVVMLTSYHDDEHVFPAIRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y       A +   +        ++       +         +  +         E
Sbjct: 100 GALSYVLKEIGPAELADAVRKAAAGEAVLHPRVAARV------VRELHGARRAEPNVFQE 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I+EG ++ EIA  L +S  TV +++++I+ K     R+ A  YA R  +
Sbjct: 154 LSDREMEVLKLIAEGLSNAEIAARLYVSEKTVKSHVSNILGKLHLADRTQAAVYAWREGV 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
 gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces griseoflavus Tu4000]
          Length = 382

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 25/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E   +    +    D +  +            +                  
Sbjct: 162 IRVVVADDQELVRAGFGMILDAQDDIEVVAEAGDGEEAVAAVRR---------------H 206

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +                 +    F              
Sbjct: 207 TPDVLLLDIRMPVMDGLEAARLVCAES---------GCKVVMLTTFDLDEYVYEALYAGA 257

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186
           + +         +   + ++     ++       +   +   +     +      +   L
Sbjct: 258 SGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRRERAAADTATPQRLDTL 317

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T REVE L  ++ G ++ EIA  L +S +TV  ++++++ K A + R  A+  A    ++
Sbjct: 318 TAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALRDRVQAVICAYETGLI 377


>gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
 gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603]
          Length = 214

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 15/224 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMILNLRPELEVVG-----TASDGDEVVQKVKQLQPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F              + Y     +   I
Sbjct: 56  MNGVEGTRLVREK--------FPYIKVLMLTTFSDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D      ++   +            +  +LT REV+ L  I  G
Sbjct: 108 AQAILTVHSGGVVLPQDITA--QIIEELKKTKVAVECNPPEQLKQLTEREVDVLRAIGLG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 166 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209


>gi|296453955|ref|YP_003661098.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183386|gb|ADH00268.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 286

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 70/291 (24%), Gaps = 61/291 (20%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N     R              A +I     +    +        GA    L        
Sbjct: 1   MNESRSIRVIIADDQELVRAGFAMVIGSQPDMEVVGQA-----SDGAQAVALAESLHPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL-------QRPTELFCPVFHTLPENITPPA 124
             +D  +      +    +           +       +    +    F      +    
Sbjct: 56  VLMDVRMPGMDGIEATSRITSLSAAPGDATISAESADDRPTRVIILTTFDLDEYVMAAIN 115

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWG 181
              + +     +   +   +  +F    II       +    +   Y  +   + D    
Sbjct: 116 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMQDGYAQHGSLTGDAARS 175

Query: 182 KDF----------------------------------------------ELTGREVECLT 195
                                                             LT RE E L 
Sbjct: 176 GAVYGSAVGVSGGAAGNGAGSMTGIPSPAGAASDGSNTSRPAYTDPELDLLTDREREVLV 235

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +V
Sbjct: 236 EIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGLV 286


>gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 70/232 (30%), Gaps = 16/232 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       +  + ++     +             G      V         +D  
Sbjct: 4   IRVLIVDDQMMVREGFSVLLGAQPDIEVVGEA-----VDGREAIDQVAALRPDVVLMDIR 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +  ++             L    F              + +       
Sbjct: 59  MPVLNGLEATREIVAAD--------ADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDFELTGREVECL 194
            ++   + ++     ++       +    +       +     G   +  ELT RE E L
Sbjct: 111 HQLGEAVRVVAAGEALLAPTVTKRLIATFSQAGWTALAGAARPGQQARLDELTERENEVL 170

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G+++ EIA  L ++ +TV  +++ I+ K   + R+ A  +A    +V
Sbjct: 171 VLVAQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLRDRTQAAVFAYEARLV 222


>gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 209

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 20/223 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V         L   +                E +             Q+++ D ++   
Sbjct: 3   LVEDHHIVRRGLVFFLKTREEFEIIGEAENGEEALHF----------VQKERPDVVLMDV 52

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +    A     +Y   ++         F      I       + Y        ++ 
Sbjct: 53  SMPKMDGIEATKRLKQYDETIKVLILSS---FSEQDYVIPALEAGADGYQLKEVQPEQLV 109

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++ +              +                       LT RE E L  I++G+
Sbjct: 110 ASIIAVQQGNANFHPKVTPAL-------MGRSAVKKEIENPFSMLTKREQEVLREIAKGR 162

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ EIA  L I+  TV  ++++++ K     R+ A  YAV++ 
Sbjct: 163 SNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205


>gi|297194807|ref|ZP_06912205.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720731|gb|EDY64639.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 11/227 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L R +      +D  +     
Sbjct: 4   RVLLADDQTLLRSAFRVLVDSEPDMEVVGEAADGAQAVALARSERADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     +    F      +       + +     +   +   
Sbjct: 64  LSATREITA------DPELSHVRIVMLTTFEVDEYVVQSLRAGASGFLGKGAEPDELLNA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +      ++       +            +          +   LT RE E L  ++ 
Sbjct: 118 IRVAAAGEALLSPAATKGLIATFLAQGGAADDDGLHAGDLSERLSALTVREREVLVLVAG 177

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 GHSNDEIATRLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 224


>gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
 gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter
           piscolens W5455]
          Length = 216

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 70/240 (29%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  L  ++D +                  L               
Sbjct: 3   IRVLLADDHEMFLEGLRELLGKADGIELAGLARDGAEAVAAAERL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +A                L   +       +       
Sbjct: 48  QPDVALMDMTMPRLNGIQATQKIAAGS--------PGTKVLVLSMHGDKNLIVESLKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFEL 186
             Y         + + +  +      +         +L+    +  + + +   G D  L
Sbjct: 100 RGYVLKECSSQELCLAIQTVANGQYYLTP------AILSTLIGDYLRLTENEEQGSDCPL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ L  + +G  + +IA  L IS+NTV+ +   I+ K    + +    YA+R   +
Sbjct: 154 SERELDVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSMAELTRYAIREGYL 213


>gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri]
 gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri]
 gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 198 EGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 198 EGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70]
 gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70]
          Length = 221

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 13/221 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++        +    + +   ++ L         +      +++P   V           
Sbjct: 1   MEAAEEVYHEIEFQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAI 60

Query: 99  YNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL--- 147
             VL         +                    G+            R    L      
Sbjct: 61  DPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSS 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWISEGKTSDE 205
             +  I+  +   ++ LL           +       +   + RE E L W +EGKTS E
Sbjct: 121 AREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAE 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 181 IAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 221


>gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L          +D  +     
Sbjct: 3   RVLLADDQALVRTGFRLIVDNAPDMLVVGEAGDGAEAATLAAELQPDVVLMDVRMPDVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A    +           L    F              + +         +   
Sbjct: 63  VEGTRRIAADGAN-------HTRILILTTFDLDEYVHASLQAGASGFLLKDTLATDLLSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +  Y  +              LT RE E L  I+ G ++
Sbjct: 116 IRVVTRGDAVVAPSVTRRL--IERYLGSGPARITPPAD-LQTLTEREREVLVLIARGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  + ++  TV  +++ ++ K   + R  A+ YA  + +V
Sbjct: 173 TEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYESGLV 215


>gi|255325940|ref|ZP_05367030.1| NarL family two-component response regulator [Rothia mucilaginosa
           ATCC 25296]
 gi|255296955|gb|EET76282.1| NarL family two-component response regulator [Rothia mucilaginosa
           ATCC 25296]
          Length = 287

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 76/286 (26%), Gaps = 56/286 (19%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  +       +S L      L  ++  D  ++                 ++  
Sbjct: 10  QPIRVMLVDDQRLVRGGLSMLVNSQPDLQVVMEADDGLAAIDVFDR----------MVSE 59

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   +D  +      +  R +   + ++  +  +R   +    F       +    
Sbjct: 60  GQAPQVILMDVRMPHCDGLEAARRILERDGEREVSEDERVRIIMLTTFDIDEYVYSAVRA 119

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-----------------GLLAAY 168
             + +        ++   +  +     +I       +                    A  
Sbjct: 120 GASGFLLKDTPPEQLLEAIRTVHRGDAVIAPSATRRLLEQMIPVLDSPAPVVPTAPAAES 179

Query: 169 QANMFKSYDVHWGKDF-----------------------------ELTGREVECLTWISE 199
                 +      K                               +L+ RE E L  I+ 
Sbjct: 180 VPATPPAAGSELPKATFIPAGHASPANSSYQSEPAQDYPHRELIEQLSPREFEVLGLIAR 239

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G ++ EI   L +S  TV  +++ ++ K   + R  A+  A    I
Sbjct: 240 GLSNAEITRELVLSEATVKTHVSHVLAKLGARDRVQAVIMAYEAGI 285


>gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 268

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 16/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A ++ +   +     +       GA     VR        LD  
Sbjct: 3   IRVVVADDQELVRSGFALILDVQPDIEVVAEVGD-----GAEAVAAVRRHAADVALLDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R ++                +    F +            + +       
Sbjct: 58  MPRRDGIEACREISGDS---------GCRCVMLTTFDSDEYVYDALHAGASGFLLKDVRR 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++     ++       +  +  Y             +   LTGRE E L  +
Sbjct: 109 DDLVHAVRVVAQGDSLLAPSVARRL--VEQYTRPGAARPRRPDPRLDVLTGRERETLLLL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S +TV  ++ +++ K   + R  A+  A    +V
Sbjct: 167 ARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGLV 215


>gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 222

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 74/232 (31%), Gaps = 17/232 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQK 73
           E E+R + V  +    D       L   +     +  + E   GA               
Sbjct: 5   EREERHTQVIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAGDGAEGVARAEELQPDVVL 64

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      + +R +                 L    F      +         Y   
Sbjct: 65  MDVKMPGMDGVEALRRLRELANP--------ARVLVVTSFTEQRTVVPALRAGAGGYVYK 116

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             D   +   +  +     ++  +    +     +            G+   LT RE E 
Sbjct: 117 DVDPEALARAIRSVHAGHVLLQPEVAGALLSQDEH--------GQGQGRGGSLTEREREV 168

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 169 LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 220


>gi|261337245|ref|ZP_05965129.1| response regulator of two-component system [Bifidobacterium
           gallicum DSM 20093]
 gi|270277604|gb|EFA23458.1| response regulator of two-component system [Bifidobacterium
           gallicum DSM 20093]
          Length = 275

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 74/268 (27%), Gaps = 47/268 (17%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +++  + E  ++  + +      +  +                    GA    L +
Sbjct: 28  SPIRVIIADDQELVSAGFAMVINSQPDMHVVGKAAN---------------GAEAVALAQ 72

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R + L               +    F      +     
Sbjct: 73  TLHPDVVLMDVRMPGMDGIEATRQICLDTNST-----PPTRVIILTTFDLDEYVMAAINA 127

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA--------------- 170
             + +     +   +   +  +     II       +     +                 
Sbjct: 128 GASGFLLKDTEPETLLSSIRTVRDGNAIIAPTATKRLIEQMMHHGFVGAAPSTGAANNTQ 187

Query: 171 ------NMFKSYDVHWGKDFE------LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                 +  ++        +       LT RE E L  ++ G ++  IA  L IS  TV 
Sbjct: 188 TQPSSSSRPQTGTAATDTPYTDPELALLTDREREVLIEVAHGLSNQVIASKLFISLPTVK 247

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A I+ K   + R  A+ +A  N++V
Sbjct: 248 THVAHILSKIHARDRVQAVVFAYENHLV 275


>gi|56798118|dbj|BAD82901.1| transcription factor [Pseudomonas sp. MT-1]
          Length = 218

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 68/221 (30%), Gaps = 14/221 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   +     +  + E   G     L +        +D  +    
Sbjct: 7   ARILLVDDHPMMRRGLRDLLELESDLEVVGEAGNGEDAIHLAQQTEPDLILMDLNMPGID 66

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R M  ++ D           +   V       +       + Y     D  ++  
Sbjct: 67  GLETTRRMRDADID--------ARIVMFTVSDEQSHVLEALRNGADGYLLKDMDAEQLVE 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + L       +  +    +           +           LT RE E L  I++G++
Sbjct: 119 QIRLAATGRMALSPELTQVLAEAI-----RVRPKPTGQVPFSSLTKREKEVLRLIAKGQS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  IA  LGI+  TV  ++ +++ K   ++R  A  + + N
Sbjct: 174 NKMIARKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWVLEN 214


>gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 218

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G                +D  + +   
Sbjct: 4   RILLVDDHAVVRSGLKMLIDAQPDLKVVGEAADGVEAIRQALELKPHIVIMDLNMPNGRN 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                    +E  +    ++    +   +               + Y   +     +   
Sbjct: 64  ----GLYTTAELLRSMPEIK---VIILTMHDDEEYLFQALKSGASGYVLKSSPGTELIQA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     +      ++  +  Y  +       H     +LT RE E L+ +++G T+
Sbjct: 117 IRQVYQGQAYLHHAAAKKV--IEGYLQSA---SHDHTDAFQQLTDREKEILSLVAKGYTN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A +L IS  TV N+ A+IM K    TR   I +AV+  ++
Sbjct: 172 KEVADLLSISAKTVENHKANIMDKLNLNTRRDLIRFAVKRGLL 214


>gi|294630526|ref|ZP_06709086.1| response regulator, two-component system [Streptomyces sp. e14]
 gi|292833859|gb|EFF92208.1| response regulator, two-component system [Streptomyces sp. e14]
          Length = 224

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 70/232 (30%), Gaps = 13/232 (5%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R           +  + ++     +             G      VR        +
Sbjct: 3   ADPIRVLIADDQMMVREGFSVLLNAMPGIEVVGEA-----VNGREAVRRVRELAPDVVLM 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +  ++             L    F              + +    
Sbjct: 58  DIRMPELNGIEATREIVAADGT--------AKVLVLTTFDLDEYVYQALRAGASGFLLKD 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++  G+ ++     ++       +    A  +   +          +LT RE E L
Sbjct: 110 ASARQLADGVRVVAAGEALLAPSVTRRLITEFAKLSGPARPPAAAQAAYGDLTERETEVL 169

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I++G ++ EI+  L ++ +TV  +++ ++ K   + R+ A  +A    +V
Sbjct: 170 VLIAQGLSNGEISERLVVAESTVKTHVSRVLVKLGLRDRTQAAVFAYEARLV 221


>gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4]
 gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4]
          Length = 224

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D                 +  + E   G +              +D  +     
Sbjct: 6   RVLVCEDQALIRAGYVTIFGAQPDLEVVGEAEDGPAALAAAEKLRPDVIVMDIQMPFLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R +                 L    F+      +      + +       A +   
Sbjct: 66  IEVTRRLVGPGSAN------PAKVLVVTTFNIDEYVFSALRAGASGFLLKDAQPAELVNA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++         L+  +   +  +     G    LT RE E L  ++ G ++
Sbjct: 120 VRTVARGEALLAPTVTR--ALIGQFADRIRPASAAGPGPLEHLTPREREVLVQLARGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  Y++ I+ K   + R  A+  A R  +V
Sbjct: 178 AEIAEELVLSIETVKTYVSRILAKLDLRDRVQAVVLAYRTGLV 220


>gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
 gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri
           93-146]
          Length = 239

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 72/232 (31%), Gaps = 25/232 (10%)

Query: 40  DCTVSWTMRMYALTEY--VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
               S T  +    +   V   H       L ++   D I+ S++P + V          
Sbjct: 3   ADNESLTREIKQFIDRSLVAYGHIQFAYLLLNKKNPSDIIIISNYPDEWVTLYKEHHYQH 62

Query: 98  YYNVLQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLM 145
              V+        P                   N++    +   Y  +  D       L 
Sbjct: 63  IDPVVISALRRVSPFLWDEKITVNSQLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAMLS 122

Query: 146 LLFPKGRIILRDRLWE-IGLLAAYQANMF----------KSYDVHWGKDFELTGREVECL 194
           L+     +   +R    + +L       F          +        +   + RE E L
Sbjct: 123 LMVDDRGLAEIERNRGVLQMLLIDAHERFINGQRQITAQRHCSNKEPIENIFSTRENEIL 182

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W S GKT  EIA+ILGI   TV  +I ++++K        AI   V   ++
Sbjct: 183 YWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234


>gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 224

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 65/225 (28%), Gaps = 12/225 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +         +     +  + E V G     L          +D  +      
Sbjct: 5   VLIADDQVMVREGFSVLLGAMPGIEVVGEAVDGREAVELTARLAPDVVLMDIRMPRLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +  S              L    F              + +        ++   +
Sbjct: 65  GATREIVASP--------AGTKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLAEAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGK 201
            ++     ++       +    A                    ELT RE E L  ++ G 
Sbjct: 117 EVVARGEALLAPSVTRRLITEFARVPETVLRGPASPHPGGAYGELTERETEVLVHVARGL 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L ++ +TV  +++ ++ K   + R+ A  +A  N +V
Sbjct: 177 SNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVFAYENRLV 221


>gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 215

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    +    +  + E   GA    ++         +D  +        +
Sbjct: 6   ADDHHVVRKGLRFFFATQGDIEVVGEAATGAEALRVIEETKPDLVLMDLSMPEMDGIQAI 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           +                   +    +      I         Y     +   +   L  +
Sbjct: 66  KKAVQQFSGIN--------IIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +    +        +     +  +D    K ++LT RE + L  I+ GK++ EI
Sbjct: 118 HDGQYKLSSAIMP-------HVLTHMRNQHDPEKEKIYQLTRREKDVLNEIANGKSNKEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 171 AAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209


>gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 236

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 23/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +       +  + +  D +  +           R+  L             
Sbjct: 16  EAIRVIVVDDHSLFRRGLQMVLSTEDDIDVVGEASDGAEALRRVEELL------------ 63

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D    +                 +         +       
Sbjct: 64  ---PDVVLMDVWMPRRSGIDACAEIKA--------AAPSTRIIMLTSSEEEEDLFGAVRA 112

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             N Y         +   +  +     +I       +           +  ++       
Sbjct: 113 GANGYLLKDVPAEEVADAIRAVVTGQSLITPKMAGLLLGEFNAMRRRDEERNLGLPGAPR 172

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ L  ++ G  + EIA  LGIS NTV N++ +I+ K    +R  A+ YAVR  I
Sbjct: 173 LSPRELDVLRLLARGMANREIAGSLGISENTVKNHVRNILEKLQLHSRMEAVVYAVREKI 232

Query: 246 V 246
           V
Sbjct: 233 V 233


>gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 224

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 14/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R             LA +I  +  +             G   F            +D  +
Sbjct: 4   RVVVADDQALFRQTLALLIGSEDDMEVVAEA-----ADGEQAFQAALEHRPDVVLMDIRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +    +A          L     L    F              + +        
Sbjct: 59  PGTSGVEATAMIADH------PDLSDVHVLILTTFEVDEHVAQAIRAGASGFIGKGIRAE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     ++       +        +   S    +G   +LT RE+E +T ++
Sbjct: 113 DLLDAVRTVASGNSLLSPIATSALITRFLSIPSRADSTSGIFG---QLTPRELEVVTLVA 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++DEIA  L IS  T   ++   M K   + R+  +  A +  +V
Sbjct: 170 MGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCGLV 217


>gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           salexigens DSM 2638]
          Length = 217

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S V  +    D     I +   +     +  + E   G     +          +D ++
Sbjct: 1   MSDVIKVLLVDDHDIVRIGVRSFLGSFDDIKVVGEAANGQEAVEMTAELSPDIILMDMLM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +R +   +             +    F T  +           Y        
Sbjct: 61  PVMDGIQAIREIRDRKLP--------GRIIALTSFATDDKLFPAIKAGAMGYLLKDSTPD 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      +  D   ++    +         D        LT RE++ L  ++
Sbjct: 113 ELLEAIRRVHRGEPSLAPDIARKVLSELSQPGE-----DSETPTPDPLTPRELDTLKLVA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +GK++  IA  + +S  TV  ++ SI+ K     R  A  YA+R  I
Sbjct: 168 KGKSNKAIAEEMFVSEATVRTHMTSILSKLHLANRVEATLYALREGI 214


>gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 210

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     VS   +    +  +   +                G     L    
Sbjct: 2   IKVLFADDHEMVRIGVSSYLSAQKDIDVVAEAND---------------GDEAVDLALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  KPDIILMDLVMKRMDGIEATKNIIEKW--------PEAKIIIVTSFLDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +   +    I+  +             +  +        D +LT
Sbjct: 99  TSYMLKTSKAKDIADAIRATYGGQSILEPEVT-------GKIMSQMRKKQEAHLHD-QLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++EGK + EIA  L I+  TV  ++++I+ K     R+ A+ YA +NN++
Sbjct: 151 EREMEVLKLMTEGKANQEIADELYIALKTVKVHVSNILNKLEVHDRTQAVIYAFKNNLI 209


>gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 230

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 15/229 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDLVRCM 90
           L A +        +   +  ++   G SH  L+     ++  L  ++  +  P   +R  
Sbjct: 2   LSAELAGARTRSLFAQALGRVSSAFGLSHATLMHAPSSEDLLLRPLLIETSLPAAYIREF 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVA 138
             +   +      R  E   P    L               +     +       T    
Sbjct: 62  DRAHMMRGCPFGLRLRESAVPPVWHLNDAVNGQAFPAELRALMLRHAIPAGIAMPTITAD 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWI 197
             R+       +   + +  + E+ ++  +  + + +           L+ RE+E + W 
Sbjct: 122 GQRLVFWFCG-ERAALAQSEVNELAMIILHALDAYNAVKRNEECTHNALSIRELEVVRWT 180

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 181 AQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 229


>gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
 gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL
           [Selenomonas artemidis F0399]
          Length = 223

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  +    D L  +   +                G          
Sbjct: 3   IRILLADDHALLRQGIKRVLNFEDDLEVVGEAED---------------GQEALARTLML 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ + +  +          R   +   +  +    +       
Sbjct: 48  KPDILLLDINMPGLTGLEVTKQLKQARS--------RTKIIALTIHDSDNYVLELLKNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFE 185
             Y     +   +   + ++      +       +    A   ++ +     W   +   
Sbjct: 100 LGYLLKDVEPNVLIKAIHMVNEGNPFVYPKLAERLFGSTAVYGDVSRMAKEIWDESRGER 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G ++ +I   LG+S  TV N++ SI  K     R+ A+ Y ++N I
Sbjct: 160 LTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYVLKNKI 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 254

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 69/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA--------------- 124
           + P D           +   V         P   +  P   T                  
Sbjct: 62  NTPADWYALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPVVRYLH 121

Query: 125 --GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
              M                 L  L   G  +  +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCADGSDVALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +      LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|258650856|ref|YP_003200012.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554081|gb|ACV77023.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 228

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 22/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  ++    S ++ L +  D +  +  LD                G     +VR  
Sbjct: 2   IRVVVVDDERIVRSGIALLLSGEDDIEVVADLDG---------------GVKAVEVVRLR 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L R +              P  L    FH             
Sbjct: 47  RPDVVIADVRMPGMDGVELTRRIVEDPHRTGNP----PKVLVLTTFHVDEAVYAALRAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +      +      ++       A+   +      +   LT
Sbjct: 103 TGFVLKDAAPTELVAAVRAVAAGEAWLDPAVARQLI---DEFASHTPADLPGPSELQALT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G ++ EI+  L +   T   ++  I  K   + R+ A+A A ++ ++
Sbjct: 160 AREREVLVLIAHGLSNAEISDHLVVGEGTTKTHVNRIFNKLGLRDRAQAVAMAYKSGLL 218


>gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002]
          Length = 221

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 20/236 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + +   +  + + +  D +      +       R+                 +
Sbjct: 2   INVGLVDDQQLVRAGFNMVLSSQDDIQIAWEANNGAEALERIE---------------VE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +            +    +    F +    +       
Sbjct: 47  PVDVVLMDVQMPIMDGISATKELVTRGLMG--PNDEPLRVIILTTFDSENYVMEAVENGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---GKDF 184
           + +         +   +  +  +  +I      ++           K   +         
Sbjct: 105 SGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIRSGQTDKKPDGLKHINEDLIE 164

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE+E L  I+ GK++ EIA  L IS  TV  ++  ++ KT ++ R  A+ +A
Sbjct: 165 PLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFA 220


>gi|302865580|ref|YP_003834217.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568439|gb|ADL44641.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 220

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 73/242 (30%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +VL  +     + +  L  R+  +  +                    G S   +V
Sbjct: 1   MNPIRVVLVDDQHLVRTGLRALLDRAPDIEVVGEAGD---------------GGSALSVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      +  R +          V+          F           
Sbjct: 46  REQRPDIVLMDVRMPGGDGLEATRRILTDSMLDGVQVV------MLTTFDDDEYLFEAIR 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         +R  +  +     ++       +       A   +S     G+  
Sbjct: 100 AGAAGFLLKDTPPDALRDAVRTVAGGDALLSPAVTRRV------LAAAARSPVADPGRLA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  +  G+++ EI   L +S +T   Y++ +++K   + R+  +  A  + 
Sbjct: 154 GLTARERDVLAQVGAGRSNAEIGQALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|77918586|ref|YP_356401.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544669|gb|ABA88231.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM
           2380]
          Length = 223

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 75/247 (30%), Gaps = 31/247 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +     + L  +     + +    +R   +  +                    G      
Sbjct: 3   KSPPFKVFLADDHPLLRTGLRMSLSRFADIDFIGEASD---------------GFKAVEK 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           ++ +      +D  +        VR +     D    +L          +          
Sbjct: 48  IKQNPPDVALIDVDMPGLSGIAAVRMLRKQYPDMTLLILSS--------YSDKHFIEEAM 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y   + D+  +   +         +       +  LA       +  +    KD
Sbjct: 100 QAGADGYVLKSIDINELADLIRAFSCGEHPMSP----YLMDLAVDWHASEQEEESPADKD 155

Query: 184 FE----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E    LT RE + L+ +++G+ + EI+  L IS  TV  +I +I +K   K+R  A+  
Sbjct: 156 DESDAFLTRREQQILSCLAQGQGNKEISNALFISTETVKTHIKNIFKKLEVKSRLEAVIA 215

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 216 AKEKKLI 222


>gi|309790624|ref|ZP_07685178.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308227352|gb|EFO81026.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 226

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 80/246 (32%), Gaps = 28/246 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +++ +++  +     + +  L +R   +  +                    GA    
Sbjct: 1   MSEKKIRVLIVDDQALIRTGIHTLLSRKSDIEVVGQAAD---------------GAEALR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +V         +D ++      +  R +  +          R   +    F         
Sbjct: 46  MVATHDPDVVLMDVMMPGMDGVEATRRLVTAG--------ARAAVIILTTFRDDTYVFRG 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----- 177
            A     Y     D   +   +  +   G ++  +   +I       A            
Sbjct: 98  IAAGARGYLLKDVDHRALADAIRTVAAGGALLNPEITAQILPYLGRLAEQTAPAPVTTAP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   LT RE   L  +++G ++ EI+  L IS  TV N+I+SI+ K   + R+ A 
Sbjct: 158 PHSERAELLTERERSILQMLAKGCSNQEISAALMISVGTVKNHISSILGKLDVRDRTQAA 217

Query: 238 AYAVRN 243
            +A++N
Sbjct: 218 LWAIQN 223


>gi|291302402|ref|YP_003513680.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571622|gb|ADD44587.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    L    D ++ +   +                G   F L+R  
Sbjct: 5   IRVLLADDQALVRAGFRALLDSCDDISVVGEAND---------------GEEAFRLIRDM 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +           +           L     +    F              
Sbjct: 50  VPDVVLMDIRMPGLDGLAATAKITAE------ASLTSVRIIILTTFDLDEYVFEALRSGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   + ++     ++       +  +A +     +       K  +LT
Sbjct: 104 SGFLVKDTEPVELLQAVRVVARGDALLSPGVTRRL--VAEFAQRAKEPVSAK--KLEQLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +     G +++EI   L +S  T   +I+  M K   + R+  + +A  + +V
Sbjct: 160 EREREVVALAGTGLSNEEIGAKLFLSPATAKTHISRAMIKLGARDRAQLVVFAYESGLV 218


>gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 235

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 17/232 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D  + +        W   +  +   +G   +LL            + + + +P D ++  
Sbjct: 3   DDFSLLANDLHRRDWERHLRKILRRIGYERYLL-SLGPSTTHDPFNRIMTTYPSDWLKRY 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-----------AGMDNRYCSLT-FDVA 138
                 +   +++     F P+F                      G+         F+  
Sbjct: 62  KDENFIQVDPIIRHCRHHFAPLFWGRARLKARGCTNRFWKEREGYGLLRGVSIPLRFNEM 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTGREVECL 194
              + +         +  D    +G+L      +     K           LT RE E L
Sbjct: 122 AGSLNVAQCVSDTDELADDLNGPLGMLFMLIPFLLEGSQKHLKTVGEPPSSLTLRESEVL 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W   GKT+ E++ ILG S  T+N +IA+  RK  + +R  A+  A+   ++
Sbjct: 182 KWTGVGKTTWEMSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQGLI 233


>gi|256421144|ref|YP_003121797.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036052|gb|ACU59596.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 210

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V+ L    D +A +            +                  
Sbjct: 2   IKVLIVDDHHLFAEGVASLFKPEDGIAVVKHTTNGNEIPDIL---------------AGS 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +     DK   V+         +  ++ +         
Sbjct: 47  DIDVILLDIDMPILNGIACMELLKHKGYDK--PVV------MLTMHQSMRQVKDALEKGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +     +              +     + F+   V      EL+
Sbjct: 99  QGYVLKDASKAELVQAINNASERKNYFHPK-------INDQVFDYFRGKSVGKSGLQELS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  ++EG  +  I+  L IS +TV  +  +IM K   KT +  I  A+   I+
Sbjct: 152 EREKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNIMHKLNVKTSAELIRLAIDKGII 210


>gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
 gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048]
          Length = 214

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 15/224 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMILNLRPELEVVG-----TASDGDEVVQKVKQLQPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F              + Y     +   I
Sbjct: 56  MNGVEGTRLVREK--------FPYIKVLMLTTFSDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ ++  G ++ +D      ++   +            +  +LT REV+ L  I  G
Sbjct: 108 AQAILTVYSGGVVLPQDITA--QIIEELKKTKVAVECNPPEQLKQLTEREVDVLRAIGLG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 166 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209


>gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 260

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 75/237 (31%), Gaps = 22/237 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            L  +     +   T  +      +G  H       L         V  ++         
Sbjct: 12  FLEALNGTSDSADLTTLLTGTFARLGFPHSCYHVVRLEGAGARLPYVLHNYKDSWSEHYF 71

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRYCSLTFDVA 138
                +   VL    +   P   +                     AG+ + Y        
Sbjct: 72  REGFLEIDPVLATCPDRQLPFLWSEAIAPESLSHDQRRMFSDARDAGLHDGYSVPIRGSH 131

Query: 139 RIRIGLMLLFPKGRIILRDRLWE----IGLLAAYQANMFKSYD-----VHWGKDFELTGR 189
                + ++  +G    R  + E    + LLA Y     +S           +   L+ R
Sbjct: 132 GEFATVTVIPEQGGDAARRLIGEQKHLVHLLALYFDRHARSTVINARLSSRRRKTVLSPR 191

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W + GKTS EIA I GIS  +V  ++ +  +K  T +++ A+  A+   +V
Sbjct: 192 EQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGLV 248


>gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda]
 gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202]
 gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60]
          Length = 239

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 29/234 (12%)

Query: 40  DCTVSWTMRMYALTE----YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
               S T  +    +      G + F  +  +   +   D I+ S++P + V        
Sbjct: 3   ADNESLTREIKQFIDRSLVAYGHTQFAYLLLNK--KNPSDIIIISNYPDEWVTLYKEHHY 60

Query: 96  DKYYNVLQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIG 143
                V+        P                   N++    +   Y  +  D       
Sbjct: 61  QHIDPVVISALRRVSPFLWDEKITVNSKLNLSKIFNLSKKYQVSRGYTFVLHDADNQLAM 120

Query: 144 LMLLFPKGRIILRDRLWE-IGLLAAYQANMF----KSYDVHW------GKDFELTGREVE 192
           L L+     +   +R    + +L       F    +              +   + RE E
Sbjct: 121 LSLMVDDRGLAEIERSRGVLQMLLIDAHERFMNGQRHITAQHYCSKKEPIENIFSTRENE 180

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L W S GKT  EIA+ILGI   TV  +I ++++K        AI   V   ++
Sbjct: 181 ILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234


>gi|297192920|ref|ZP_06910318.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151558|gb|EFH31236.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   GA     +R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEAIENLRSTAVDVVLMDVRMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F       +      + +         +   
Sbjct: 64  VEATRRICAEPNAP--------KVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLGA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +    +         +    +   LT RE E +  +++G ++
Sbjct: 116 IRSVHSGDAVVAPSTTRRLLDRFS-PMLPSAGPEPRQKELARLTEREREVMMLVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 175 GEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|297625882|ref|YP_003687645.1| LuxR family transcriptional regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921647|emb|CBL56204.1| Regulatory protein, LuxR:Response regulator receiver
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 232

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 68/231 (29%), Gaps = 9/231 (3%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           DE R      +    D       +      T       + VG +  +     +      D
Sbjct: 11  DEPRPEGPRRVVLVDDHDIFRAGVR--HELTAAAPDEIDVVGEAGDVEQAVKVITGTTPD 68

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++             + +  +    +   T L   V     + I         Y + + 
Sbjct: 69  VVLLDVHLPGGGGAEVVRQVHQIDPKI---TFLALSVSDAAEDVIAVIRAGARGYVTKSI 125

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   +  +     +        +        +   S +        L+ RE E + 
Sbjct: 126 STADLVEAIGRVATGDAVFSP----RLAGFVLDAFSGSISVESIDEDLDRLSQREREVMK 181

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G T  E+A  L IS  TV  ++++++RK     R     +A    +V
Sbjct: 182 LIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNRHELTKWATDRKLV 232


>gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
 gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196]
          Length = 214

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 15/224 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMILNLRPELEVVG-----TASDGDEVVQKVKQLQPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F              + Y     +   I
Sbjct: 56  MNGVEGTRLVREK--------FPYIKVLMLTTFSDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D      ++   +            +  +LT REV+ L  I  G
Sbjct: 108 AQAILTVHSGGVVLPQDITA--QIIEELKKTKVAVECNPPEQLKQLTEREVDVLRAIGLG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 166 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209


>gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 228

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 10/226 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L R +      +D  +     
Sbjct: 4   RVLLADDQTLLRSAFRILVDSEPDMEVVGEAADGAQAVTLTRSERADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     +    F      +       + +     +   +   
Sbjct: 64  LAATRTITA------DPALAAVRVIMLTTFEVDEYVVGALRAGASGFLGKGAEPEELLNA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEG 200
           + ++     ++       +      Q            +  +   LTGRE E L  ++ G
Sbjct: 118 IRIVAAGEALLSPTATKGLIARFLAQGGDGADEQRAAAYGERLNALTGREREVLVLVAGG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++DEI   L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 LSNDEIGERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|126740492|ref|ZP_01756179.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           SK209-2-6]
 gi|126718293|gb|EBA15008.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           SK209-2-6]
          Length = 239

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 21/239 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
                 D+L  +   +        +  + +  G    +    D   +Q         +  
Sbjct: 3   RPVDLDDILQALDLTESLDGLQSIIEEVCQAFGVDDAMYHWVDSAGDQYG----CGTYKQ 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSL 133
             ++        +   V+    + F PV     +           +       +  Y   
Sbjct: 59  AWIQRYLDKGYVRSDPVIAGCYQRFHPVDWRRLDWTTRQAKEFRSDAQNYGVGNQGYSVP 118

Query: 134 TFDVARIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LT 187
                       +            +     E+ L+  Y       ++     +    L+
Sbjct: 119 IRGPNGQFALFTVSHSCNDANWDEFIDTFSQELILVGHYFNRKALEFEPKRKPEHTPPLS 178

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ LT ++ G    ++A  L IS +T+  YI S   K      + AIA A+   ++
Sbjct: 179 PREMDALTLLAIGYNRAQVAKTLSISEHTLRVYIESARFKLGALNTTHAIARAISCGLI 237


>gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 66/218 (30%), Gaps = 14/218 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-----LDSIVSSDWPFDLV 87
             R++  D    +   +  L E +G              Q       D +V         
Sbjct: 9   AIRVLITDDHPVFRQGLRGLLEALGVEVVGEAESGPQAVQLAAELQPDVVVMDLHMPGGN 68

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A     +    +         +F                Y         I   +  +
Sbjct: 69  GIEATRTITRTSPRIGVL---VLTMFRDDDSVFAAMRAGARGYLLKESGAEEIARAVRAV 125

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                I   +       +  Y A+M    D       ELT RE E L  I++G+++ EIA
Sbjct: 126 AAGEAIYGPEIARR---VLTYFADMP---DPKQTAFPELTEREREVLQLIAQGRSNGEIA 179

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S  TV N++++I  K     R+ AI  A    +
Sbjct: 180 QTLFLSPKTVRNHVSNIFMKLHVADRAQAIVLAREAGL 217


>gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 211

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 15/208 (7%)

Query: 54  EYVGASHFLLVRWDLFQEQKLD--SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           +  GA  F      +F  Q      +V+  +  D +     ++  +   +          
Sbjct: 2   DRFGADKFSYHFTPVFGSQVSRETQVVARGFSMDWLDLYDSADFRQCDPIPDEVMRAGHT 61

Query: 112 VFHTLPENIT-------------PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           +      +                  G+ N +    +            FP       ++
Sbjct: 62  ISWEEALDRAEHTPEVERFIAALREYGIANGFGVPLYGPDNRDAYAAFGFPAEVTPTEEQ 121

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +  + ++A    +           +  L+ RE+E L  I+ GK+   IA +L IS +TV 
Sbjct: 122 IVALTMVARTAHDRVCQLVTIEEGEISLSQRELEVLRLIAHGKSKPVIAQLLEISADTVG 181

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y+  +  K     R GA   A++  ++
Sbjct: 182 TYVKRLYAKLGVSDRVGATVKALKLKLI 209


>gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
 gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei
           F0415]
          Length = 213

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  I+L  + E     +         +  +   D                G     + 
Sbjct: 1   MDKTKIILVDDHEMVRLGLKSFFNMQPDIEVVGEADN---------------GKDGVEMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LNLRPDVVVMDLVMPEMDGVEATLAILKEW--------KAAKILVLTSYLDNEKIYPVIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K +D H     
Sbjct: 98  AGAKGYMLKTSSAAEILNSIRKVAQGQVAIETE-----------VDQKIKYHDQHPDLHD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K   + R+ A+ YA ++N
Sbjct: 147 DLTARERDVLALLAKGYDNQTIADELFISLKTVKTHVSNILAKLNVEDRTQAVVYAFQHN 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 228

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 10/226 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L +        +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVRLTKEQQADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     +   +   
Sbjct: 64  LAATRMISA------DPDLADVRVVILTTFEVDDYVVQSLRAGASGFLGKGSEPEELLTA 117

Query: 144 LMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           + +      ++       +    L      +          +   LTGRE E L  ++ G
Sbjct: 118 IRIAAGGQALLSPAATTGLISRFLAQQDPDDAGDRDPARGERLASLTGREREVLVLVAGG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 HSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 209

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 24/222 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     + +++ L+                G     +          LD  +   
Sbjct: 9   LIDDHPLMRQGIRQILELEDNFVIVGEASN-----GTDGISIALDTNPDLIILDLNMKGI 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +R +     D           +   V     +         + Y     D A + 
Sbjct: 64  SGLDTLRALRKHGID--------SRIIVLTVSDEQSDIFALMDAGVDGYLLKDSDTAELV 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                               LT RE + L WI+ G 
Sbjct: 116 ENIRKAAQGETVLSES-----------VKQHLLERRPENDPLSVLTDRERDVLQWIATGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 165 SNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206


>gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 237

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             +LLA +            + A T  +   +        +   +      S++P    R
Sbjct: 5   AEELLAGLDGARSEDEAFRSIEAATTALDFEYCAYALRVPWPLSRPRIETRSNFPEQWKR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI 140
               +       +L        P+                    G+   +    FD    
Sbjct: 65  RYGEAGFLDVDPILAHGRRSQQPIVLTEALFASAHQMWVEAQSFGLRFGWAQSNFDAYGG 124

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+     +   +      R+  +   A           +    +  LT REVE L
Sbjct: 125 MGMLALVRSSEPMTEAELGAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 185 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 218

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 71/241 (29%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +V+  +       V  L      +  +      +    ++  L             
Sbjct: 3   DKIRVVIVDDHAILREGVRALLQLQPDIEVVGEGADGMQALEQVERL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +    +            +R   L    +            
Sbjct: 50  --DPDVVLMDIAMPGLGGIEASLQLKKLG--------RRARILILSQYEDREYVRRLLKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y       A +   +  +   G ++  +        A        +          
Sbjct: 100 GVSGYVLKKSAGAELANAVRAVHRGGLVLDPEVARTAMEEAG------PAAPGEADPYES 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG+++ E+A +LGIS  T  ++   +M K     R+  + +A+R  +
Sbjct: 154 LTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGV 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
          Length = 217

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 19/231 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            ++R   V       + L  +  L+                G    LL+         +D
Sbjct: 2   SKRRILVVDDHFVVREGLKLIFELEDEYEVVGEAEN-----GEQALLLIDELKPDVILMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      D+++ +   E      ++          ++         +     Y     
Sbjct: 57  LSMPKMSGLDVLKALKEKENSI--PII------ILTTYNEDNLIKEGLSLGAKGYLLKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +   F    ++  +    +           K   ++   +  +T RE+  L 
Sbjct: 109 TREELIRTVESAFRGELLLQPEVSKVL------FNVKKKESTINTSFNASITERELFILQ 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G  S EIA  +GIS  TV  ++ +I  K    +RS A+A A+   I+
Sbjct: 163 SIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGII 213


>gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   D        +  + + +   ++L          K D  +  ++P    +    +  
Sbjct: 18  IKTCDNNKDINQCLSEMAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIG 143
            +Y  V+        P+   + E                 +G+   +       +     
Sbjct: 78  LEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGM 137

Query: 144 LMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L             + L        +L +   N  K        D  LT RE ECL W S
Sbjct: 138 LSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWAS 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 198 EGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232


>gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans]
          Length = 214

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
              +   +   +            +  +++ S++P          E       ++     
Sbjct: 2   ASEMARKLEFDYCAYGLRMPLPLVRPKTVLFSNYPAVWQARYQAQEYQAIDPTVRHAMRS 61

Query: 109 FCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--- 157
             PV  +                 G+         D   +   L L      +   +   
Sbjct: 62  PSPVVWSDDLFAPARELWEEARSFGLRAGLAHTCRDAGGMGGMLTLARAGETVTTAEWQA 121

Query: 158 -RLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISR 214
                + L+ A   +M +        +   +L+ REVE L W  EGKTS EIA IL I+ 
Sbjct: 122 KACHILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLRWTGEGKTSGEIANILNITE 181

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TVN +I+  M K     ++ A+  A    ++
Sbjct: 182 RTVNFHISKAMAKLNAVNKTAAVLQAAMLGLL 213


>gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 254

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 70/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA--------------- 124
           + P D           +   V         P   + LP   T                  
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYLH 121

Query: 125 --GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
              M                 L  L   G  +  +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +      LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|54026224|ref|YP_120466.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017732|dbj|BAD59102.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 220

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 67/226 (29%), Gaps = 10/226 (4%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSS 80
             + +    D           ++    +  + +   G       +        +D  +  
Sbjct: 1   MATTVLIADDQAMVRQGFGALLAAQPDISVVGDAPDGKVAVAEAKRLRPDVVLMDVRMPE 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D  R +  +        ++         F          +   + +         +
Sbjct: 61  MNGLDAARAILAAGF---DPPVRVLM---LTTFDIDDYVYEALSIGASGFLLKDAPAEEL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + ++     ++       +    A   +   +      +   LT RE E L  ++ G
Sbjct: 115 VRAVRVVAEGQALLAPTVTRRLI---AEVTSRRAASRKPAPELAALTPREREVLELVARG 171

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L ++  TV  +++ +  K   + R+ A+  A  + +V
Sbjct: 172 MSNTEIAEALFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGLV 217


>gi|73748274|ref|YP_307513.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669054|ref|YP_001213872.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|289432323|ref|YP_003462196.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659990|emb|CAI82597.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270002|gb|ABQ16994.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
 gi|288946043|gb|ADC73740.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  +++  +       +S L ++   +  +                    G     +V
Sbjct: 1   MAKTKVLIADDHAVLREGMSRLLSQEKDIEVIGEAGD---------------GQEAVDMV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +  + +  +              L    +  +   +    
Sbjct: 46  AQLKPDVVLMDIVMPRLTGVEATKLIKKNNPSTC--------ILILTAYSDIRYILGLLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +     I   +  +     ++      ++        N+ K  D    +  
Sbjct: 98  AGASGYLLKSAKSDEIVGAIRAIKAGESVLDSVATRKL---LERVVNVSKESDEDKVR-G 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L   S+G ++ EIA  L +S  TV  ++++I  K     R+ AI    R  
Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 245 IV 246
            V
Sbjct: 214 YV 215


>gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 26/244 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              +++  +DE   + +  L      +  +      V    +   L              
Sbjct: 10  PTTLLIADDDEVTRTGLRMLLAAQPGIEVVGEAADGVEVVEQARRL-------------- 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCM----ALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                  +D  +      +  R +                  P  +    F         
Sbjct: 56  -RPDVVLMDVRMPRRDGIEATRRLLAGTDEPAGPGGGPAPAPPKVVVITTFENDDHVTAA 114

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +   + +      V +I   + ++     I+    L    ++A    +   +       
Sbjct: 115 LSAGASGFVLKRLPVRQIAEAVRVVAAGEAILFPATLRR--MVAVRPLDSAAALPRAA-- 170

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LTGRE E L  ++ G ++ EIA  L +S  TV  ++ +++ K   + R+ A+  A  
Sbjct: 171 ---LTGREEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYE 227

Query: 243 NNIV 246
           + +V
Sbjct: 228 SGLV 231


>gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
 gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3]
          Length = 207

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  + E     VS   +    +  +   +                G     L      
Sbjct: 1   MLLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQLRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D ++      +  R +                 +    F    +           
Sbjct: 46  DIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGATS 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   T   + I   +   +    ++      ++        +  +        + ELT R
Sbjct: 98  YLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELTER 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 150 ESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 205


>gi|78356024|ref|YP_387473.1| two component LuxR family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218429|gb|ABB37778.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 223

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +     +    E   G     L   +  +   +D  +      
Sbjct: 7   LIIAEDHTLLREGLKSLLQSVPHLIVTGEASDGQMAVDLCDRNQPELVLMDISMPRMDGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +                 L   V           A   + Y           + +
Sbjct: 67  QATRLIKKRH--------PEVRVLVLTVHGAGEYVYAALAAGADGYVLKDASNDEFILAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +         ++  Y  +              LT RE E    ++EG  + 
Sbjct: 119 ESVLGGKIYLSPGV--SDAVVKGYLND--ARGQSVSSSWETLTPREQEIFQLVAEGYKNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L +S  TV  + +++M+K    + +   A A+   I+
Sbjct: 175 EIAEMLVVSVKTVEKHRSNLMQKLGVHSAAELRALALERGII 216


>gi|186682209|ref|YP_001865405.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464661|gb|ACC80462.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 232

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 70/212 (33%), Gaps = 11/212 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++ +D        + A+ E       VG +    V  +L  E + D ++      ++  
Sbjct: 10  RLLIVDDQSLIRQGLKAMLEQEPDLEVVGDAENGKVALELVAELQPDVVLMDIRMPEMDG 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A     + +  ++         F                Y       + +   +    
Sbjct: 70  RTATKLIMQSFPNIKVLVLST---FDDDSYLTGAMRAGAKGYLLKDMPSSELADAIRFGH 126

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                       ++  L    A+   + +    K  E+T RE E L  I  G T+ EIA 
Sbjct: 127 SGYTQFGPGLFDKL--LVTEAASASANQNSASSKPSEITAREQEVLCLIGVGATNREIAQ 184

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L I+  TV  ++ SI+ +   K RS    YA
Sbjct: 185 QLYITEGTVKTHVTSILSRLNLKNRSQLAIYA 216


>gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240149]
 gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           NZ-05/33]
          Length = 218

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLNMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECIRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|297627348|ref|YP_003689111.1| Two component transcriptional regulator, LuxR family
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296923113|emb|CBL57700.1| Two component transcriptional regulator, LuxR family
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 220

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 25/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + + L  + E   S    L    D +  +           ++  L             
Sbjct: 3   DPITVFLADDQELVRSGFRMLIDAEDDMEVVGEGVDGADTVRQIATL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  + +   +             L    F            
Sbjct: 50  --RPDVVLMDIRMPGMDGVEATKQVVALDN--------GTKVLVLTTFDLDEYVFAALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +       A +   +  +     ++       +  L      +         +   
Sbjct: 100 GASGFLLKDTRPADLLSAIRAVAAGDSVVAPSATRRL--LDHVAPTLPDHVGEPDERLDV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    +
Sbjct: 158 LTDREREVLVEVAKGATNAEIATNLFMAEGTVKTHIGRLLAKLHCRDRVGLVLFAYETGL 217


>gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 217

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 19/231 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            ++R   V       + L  +  L+                G    LL+         +D
Sbjct: 2   SKRRILVVDDHFVVREGLKLIFELEDEYEVVGEAEN-----GEQALLLIDELKPDVILMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      D+++ +   E      ++          ++         +     Y     
Sbjct: 57  LSMPKMSGLDVLKVLKEKENSI--PII------ILTTYNEDNLIKEGLSLGAKGYLLKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +   F    ++  +    +           K   ++   +  +T RE+  L 
Sbjct: 109 TREELIRTVESAFRGELLLQPEVSKVL------FNVKKKESTINTSFNASITERELFILQ 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G  S EIA  +GIS  TV  ++ +I  K    +RS A+A A+   I+
Sbjct: 163 SIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGII 213


>gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  + +   +    +      +  +      +     +  +               
Sbjct: 3   IRVFVVDDQDLVRTGTIMVIQAQGDMTVVGEARDGLEALAGLGKVV-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +              P  +    F              
Sbjct: 49  -ADVVLMDVRMPLLDGVEATRRLLAG-------AGAGPKVIVLTTFDLDEYAFAALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         I   +  +     +I       +        ++  +  +       LT
Sbjct: 101 SGFLLKDAPAEEIVAAVRTVHEGDAVIAPSTTRRL------LDHVAPTLPLPADPPVPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++G+T+ EIA  L +S  TV  ++  I+ K   + R  A+ +A  +  +
Sbjct: 155 DREREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRILAKLQLRDRVQAVIWAYEHGQI 213


>gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 204

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 67/239 (28%), Gaps = 37/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +S +    D +  +                    G     ++   
Sbjct: 2   IRVLLVDDHPVVRAGLSAVLNTGDDIDVVAQAGT---------------GREALDILAST 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L    A   +     VL          F T    +       
Sbjct: 47  QVDVVVSDIQMPQMDGVELT---AELGRMGGPPVL------ILTTFDTENLIVAAMNAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++  +    +                       L+
Sbjct: 98  QGYLLKDAPPEELTRAVRAVNEGRPVMSDEVTVAL-------------TRRLTQPRTSLS 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G T+ EIA  L IS+ TV  ++  I  K     R+ A+A A    ++
Sbjct: 145 ARELEILQAVATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQLI 203


>gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 227

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +S    +  + E   G     L          +D  +     
Sbjct: 10  RVLLVDDQDLVRAGFRMILSVEQDIEVVGEAADGEKAVELALDLRPDVVLMDVQMPGLDG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +  ++             +    F              + +         +   
Sbjct: 70  IAATQRIVAAD---------AGKVVILTTFDRDDYLFESLGAGASGFLLKNTAPEDLVEA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++  +    +    A         D+      ELT RE E L  I+ G T+
Sbjct: 121 IQVVHSGHALLAPEVTRRVIKRFAGGGERVYRPDLVA----ELTDREREVLGLIARGLTN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  +++ ++ K   + R  A+ +A    +V
Sbjct: 177 TEIAGQLFVGEATVKTHVSRVLLKLGLRDRVQAVVFAYECGLV 219


>gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 218

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHDFEVIGEAADGLSGIKMINRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQTLSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPREMEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|270307800|ref|YP_003329858.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270153692|gb|ACZ61530.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 232

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 76/242 (31%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  +++  +       +S L ++   +  +                    G     +V
Sbjct: 1   MAKTKVLIADDHAVLREGMSRLLSQEKDIEVVGEAGD---------------GQEAVDMV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +  + +  +              L    +  +   +    
Sbjct: 46  AQFKPDVVLMDIVMPRLTGVEATKLIKKNNPSTC--------ILILTAYSDIRYILGLLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +     I   +  +     ++      ++        N+ K  D    +  
Sbjct: 98  AGASGYLLKSAKSDEIVGAIRAIKAGESVLDSIATRKL---LERVVNVSKESDEDKVR-G 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ REVE L   S+G ++ EIA  L +S  TV  ++++I  K     R+ AI    R  
Sbjct: 154 QLSPREVEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213

Query: 245 IV 246
            V
Sbjct: 214 YV 215


>gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 209

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ +  R   +  +   +                G       R  
Sbjct: 7   IRVLIADDHAIFRQGLATIINRDPEMQVIAQAEN---------------GEQAIAAFREH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +            +    +    + +  +         
Sbjct: 52  QPDVTLMDLRMPEVEGVAAIGAI--------CATAKSARIIVLTTYDSDEDIYRGLQAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +  +    + I  D   ++    +               + EL+
Sbjct: 104 KGYLLKETEPDELLNAIRTVHRGQKYIPPDVGAKLVQRLS---------------NPELS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  +++G ++ EIA  L I   TV +++  I+ K     R+ A+  AV+  IV
Sbjct: 149 ERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGIV 207


>gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 216

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G                +D  + +   
Sbjct: 3   RILLADDHALFRQGLKSLLEAEPDFKVMGEAKDGREALRHALEAHPDIILMDIQMPNLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +             +   +   ++                Y     D   +   
Sbjct: 63  VQATQEILKEW--------PQAKVIMLTMYCQDGYVFEAVKAGARGYMLKDADAKELLEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++    ++  +   +I        +     +       EL+ REV+ L  +++G T+
Sbjct: 115 IRRVYQGEVLLDAEMAEQI------IQDFKAKQETTPKAHAELSEREVQILRLVAQGYTN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV N ++ I +K     R+ A  YA+R  +
Sbjct: 169 LEIAAELSLSEKTVRNRLSDIFQKLHLNNRTQAALYALREGL 210


>gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 247

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 77/230 (33%), Gaps = 24/230 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
           +   +   R+  +   +G   F LVR    +   +D I++  WP D     A  +     
Sbjct: 18  EGAATMRERLSKVVAGLGFDFFKLVRQAGPESGAVDMILAEQWPSDWPELYAKRKYATID 77

Query: 100 NVLQRPTELFCPVFHTLPE----------------NITPPAGMDNRYCSLTFDVARIRIG 143
             L+             P                       G+++ Y         +   
Sbjct: 78  PTLRYLGHSQGGFRWREPMEAYQEDPHYKRMERMMADARRFGLEDGYVFPVHGRRGLVGY 137

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTW 196
           L  +      +LR  +  +  LA                +        ++T RE++ L +
Sbjct: 138 L-TIAGGYVELLRSEMAMMDALAKKAFWELVELLDPAAHERLNRPVTMQMTKREMQTLEY 196

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  G TS+E+   LG+S +TV+ Y+  I  K   K R   +A A R  ++
Sbjct: 197 LGCGMTSNEMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRLGLI 246


>gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 75/240 (31%), Gaps = 24/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V ++L  +D   +  ++H       +  +               L         L+  
Sbjct: 46  QPVRVLLIDDDPHMSRVIAHELLADLRINLLGQGGS----VREGRRLISQNEFDVMLV-- 99

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +     F L+  M          V+                 +     
Sbjct: 100 ---------DLNLGDGTGFALIEYMKTVRPMAEAIVI--------SAMEDEQHALHAFEL 142

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y             ++ +   G  I  +    +        N  ++   +  K+ +
Sbjct: 143 GATGYLVKNSWFGNFPQAVLQVVNGGASITPNLARRLLNKFEQPQNNVQTLQENKNKE-K 201

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+++A    +
Sbjct: 202 LSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIKNIYRKLNVRTRAQAVSFAASRGL 261


>gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
 gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3]
          Length = 213

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMLLNLRPELEVVG-----TATDGDEVIQKVKELHPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F+             + Y     +   I
Sbjct: 56  MNGVEGTRLVREQ--------FPHIKVLMLTTFNDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D       +         +      +  +LT REV+ L  I  G
Sbjct: 108 AQAILTVHSGGVVLPQDIT---AQIIEELKKTKVAVCNPPEQLKQLTEREVDVLRAIGLG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 165 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 208


>gi|282861721|ref|ZP_06270785.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563537|gb|EFB69075.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 229

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 5/223 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + +   G     + R        +D  +     
Sbjct: 4   RVIIVDDQAMVRAGFAALLAAQSDIEVVGQAPDGRQGVEVSRRTCPDVVLMDVRMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  +          RP  L    F              + +       A +   
Sbjct: 64  LAAARELLSAPAGTD----HRPKVLMLTTFDVDDYVYEALRVGASGFLLKDAPPADLIAA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    A Q            +   LT RE E L  ++ G ++
Sbjct: 120 VRVVAAGDALLAPSVTRRLIADFARQRPSGAFRSGPARRLKGLTPRETEVLELVARGLSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +++ I+ K   + R+ A+ +A  + +V
Sbjct: 180 QEIAGRLVVAEQTVKTHVSRILAKADLRDRAQAVIFAYESGLV 222


>gi|158314991|ref|YP_001507499.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110396|gb|ABW12593.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 223

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 10/224 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L   +     +  + E   GA     V         +D  +     
Sbjct: 3   RVLLADDQALLRMGLRIVIDTEDDLTVIGEASDGAEAVRAVAELQPDVVLMDVRMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +                 L    F              + +         +   
Sbjct: 63  ITATAQITARH--------PASRVLILTTFDVDQYVFDGLRAGASGFLLKDAAPGELVNA 114

Query: 144 LMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +     ++       +    AA  A+             +LT RE E    ++ G +
Sbjct: 115 IRTVARGDAVLGPTAARRLVDRFAALPADSGSDRAARPEIVHDLTEREREVFLLVARGYS 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S +TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 175 NREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAYESGLV 218


>gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           OX99.30304]
 gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M0579]
          Length = 218

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 28/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECIRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +        +   +   ++                       LT
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLI-----SPQSTQGTQALSSLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 155 PRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 220

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 12/224 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D +         +     +  + E V G     L          +D  +       
Sbjct: 2   LIADDQVMVREGFSVLLGAMPGIEVVGEAVDGREAVELTARLAPDVVLMDIRMPRLDGIG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +          V      L    F              + +        ++   + 
Sbjct: 62  ATREIVA------SPV--GTKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLAEAVE 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKT 202
           ++     ++       +    A                    ELT RE E L  ++ G +
Sbjct: 114 VVARGEALLAPSVTRRLITEFARVPETVLRGPASPHPGGAYGELTERETEVLVHVARGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++ +TV  +++ ++ K   + R+ A  +A  N +V
Sbjct: 174 NQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVFAYENRLV 217


>gi|72163349|ref|YP_291006.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71917081|gb|AAZ56983.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 221

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 30/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + E     V+ L    D L  +           R+  +              
Sbjct: 9   PIRVFLVDDHEVVRRGVASLLEDEDDLEVVGEASTAEQALSRIPVV-------------- 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++ R +  S  D           L    F             
Sbjct: 55  -KPDVAILDVRLPDGSGVEVCREIRSSHPDIAC--------LMLTSFADDDALFKAVMAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       + +   +  +   G ++       +           +           L
Sbjct: 106 AAGYVLKQIHGSDLVGAVRTVASGGSLLDPRSTGRM-------LERLRQNGGKPDPLAAL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T +E + L  I EG T+ +I   L ++  TV NY++S++ K   K R+ A     + 
Sbjct: 159 TPQERQILDLIGEGLTNRQIGERLFLAEKTVKNYVSSLLGKLDLKRRTQAAVLVAQL 215


>gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 213

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA               +D  +      
Sbjct: 7   VLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELRPDVVLMDVKMPGMDGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +R +                 L    F      +         Y     D   +   +
Sbjct: 67  AALRRLRELANP--------ARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++  +    +           +  +   G+   LT RE E L  I++G+++ 
Sbjct: 119 RSVHAGHILLQPEVADALL--------SQEEANSGQGRGGSLTEREKEVLGLIADGRSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ +
Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 211


>gi|269794993|ref|YP_003314448.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097178|gb|ACZ21614.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 258

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 23/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ ++L  + E   S ++ +    D L  +                    G+    +V 
Sbjct: 32  PRIRVLLVDDQELFRSGIAVIVDAQDGLEVVGQAAD---------------GSEAVRMVD 76

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +      +  +       +    F            
Sbjct: 77  DLSPDVVLMDVRMPELDGVEATRQIFA--PARAASRAGPVRVIVLTTFDLDDRAAAAIRY 134

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +       A +R  +  +     ++  D       L+      F++         +
Sbjct: 135 GASGFLLKDATPAMLRDAIRTVHAGNAVLAPDD------LSTLLDGRFRARRPSPPGLED 188

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E E L  ++ G  + EIA    +S +TV  ++ +++RK   + R   +  A  + +
Sbjct: 189 LTPKEREVLAAVAAGLNNAEIARRAFVSESTVKTHVGAVLRKLGLRDRVQVVVLAHEHGL 248

Query: 246 V 246
           V
Sbjct: 249 V 249


>gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 243

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 73/260 (28%), Gaps = 40/260 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +++ ++L  +     S +  L         +                    G     
Sbjct: 1   MAEEKIRVLLVDDHTLFRSGIRSLLQSYVCFEVVGEAGD---------------GREGIR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD+ +      +  R +           +     L   V     + I  
Sbjct: 46  LAGQLRPDVVLLDNNMPGLSGREAARLLLEE--------VPETRVLMLTVSEDADDLIET 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +        ++    + ++       A+           
Sbjct: 98  LRAGACGYLLKNIQAETLVSAIKTAAQGESVVSPQMMGKLLSGVRSSASRAAMGGAIAPA 157

Query: 183 D-----------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                              +L+ RE E L +I+ G+++ EIA  L ++ +TV  ++ +++
Sbjct: 158 PGALARSAPAAGAEPAELEKLSPREREILRFIARGQSNKEIARALELAESTVKIHVQNML 217

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK    +R  A  +AV N +
Sbjct: 218 RKLNLSSRVQAAVFAVENGL 237


>gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 225

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 11/232 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
            +T  +  +    D       L   +     M  + E + G     +   ++     +D 
Sbjct: 1   MQTEKMIRIVLADDQPFIRKGLRYILDIQKDMQVIGEAMTGEEAVDITLRNVPDIVLMDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         + +A          L     +    F              + Y     +
Sbjct: 61  RMPGGTGIMATKSIAE--------ALPNTKVVLLTTFDVEQYVFDGIRAGASGYLLKDTE 112

Query: 137 VARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
              +  G+  +     +         +  +         S      +    LT RE E L
Sbjct: 113 TDELLSGIRAMHRGATLFNSSTAKRALDQILTSGMQEPDSDSPGKDRLLGALTERETEVL 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ GK + EI+ IL IS  T   +I  IM+K     R+ A+  A+R  +V
Sbjct: 173 QLLAYGKRNHEISAILCISEGTTKTHIHHIMQKLGALDRTQAVVTAIRMKLV 224


>gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 596

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 24/239 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDL 68
           +  +  L   SD   R+  +D        ++ + +             G     L R   
Sbjct: 369 SCVLPRLIQLSDERIRLCIVDDHSFIRDSLHTILDGQEDLQVVGVAEDGEQAVELCRSLN 428

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +       + +  +     +  ++         F              +
Sbjct: 429 PDLILMDLEMPNQDGIRATKIIKET-----WPDIRVLILST---FQDTERAKEIMRSGAD 480

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELT 187
            Y   + +   +   + L++  G +I +D    +        +  +S       +++ LT
Sbjct: 481 GYLLKSIESRELAETIRLVYRGGTVINQDLFHRMW----DGNDEEESVGPRSDGEEYGLT 536

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +S+G     I+  L +S  TV NY +++  K     R  A+  A    ++
Sbjct: 537 KRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLYDKLGVNNREEAVQKARDTGLL 595


>gi|304405956|ref|ZP_07387614.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345199|gb|EFM11035.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  + E     +  +    D +  +                    G       
Sbjct: 1   MPKMKVLIVDDQELILESLKIVLEMEDDIEVVGLAKN---------------GEEAIDYC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +                 +    +  +   +   +
Sbjct: 46  ENFQPDIILMDINMPIMDGVVATEKIK--------PRFPLTKIIILTSYKEVEYVLAALS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         +  G+ ++   G +I  +   ++                    +F
Sbjct: 98  HGAEGFLLKAIHPKNLIAGIRVVHTGGTLISPEMADKMIKSMLKSGPELLEK----NNEF 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REVE L  ++ G  + +IA  L +S  TV NYI++I  K   K R  A   A    
Sbjct: 154 GLSAREVEVLHKLALGLRNQDIAKALYLSEGTVKNYISNIYSKMNVKGRREAAYKARETG 213

Query: 245 IV 246
           I+
Sbjct: 214 IL 215


>gi|258653548|ref|YP_003202704.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556773|gb|ACV79715.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 223

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +    E + GA      R        +D  +     
Sbjct: 4   RVLLADDQALIRGGFAALIDSADDLAVAGEAIDGADAVRQARALRPDVVLMDVRMPGLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L +   L    F      +       + +        ++   
Sbjct: 64  VAACAQITG------DPALAQVKVLVLTTFEQDDYILAALQAGASGFLGKGASPTQLLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +   A          +        LT RE E +  +++G ++
Sbjct: 118 IRVIARGESLLSPRATRVVIERALAAPGAATPDEAAGPDLSVLTEREREIVGLVAQGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L +S  T   ++   M K   + R+  +  A R  +V
Sbjct: 178 DEIAARLYLSPLTAKTHVNRAMTKLGARDRAQLVVLAYRAGLV 220


>gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 218

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 74/238 (31%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       ++ L      L  +           ++  L               
Sbjct: 2   IRIMIVDDQSLIRDGLAMLLNLRQELEVVGTATDGDEVIQKVKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +  R +                 L    F              
Sbjct: 47  HPEIILMDIRMPRMNGVEGTRLVREQ--------FPHIKVLMLTTFSDSELIFEALEQGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   I   ++ +   G ++ +D      ++   +            +  +LT
Sbjct: 99  SGYLLKDMETDAIAQAILTVHSGGAVLPQDITA--QIIKELKKTKVAVECTTPEQLAQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 157 EREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 214


>gi|307330474|ref|ZP_07609617.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883899|gb|EFN14942.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 60/233 (25%), Gaps = 14/233 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +         V   P   D +AR    +            T   G       +       
Sbjct: 5   HDGRPMTVMVVDDHPMWRDAVAR-DLAEAGFDVV-----ATAGDGPQAVRRAKAAGPDVL 58

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +      ++ + +                 L         + +         Y  
Sbjct: 59  VLDLNLPGLPGVEVCKEVLADR--------PELRVLVLSASGEHGDVLEAVKSGATGYLL 110

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +     +   +        +        +       A              +LT RE E
Sbjct: 111 KSASTEELLDAVRRTAAGDPVFTPGLAGLVLGEYRRLAGEPAPTAADQPAVPQLTERETE 170

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 171 VLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 223


>gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 236

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 71/231 (30%), Gaps = 14/231 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D       L   +     M  + E        L    L QEQ+ D +V    
Sbjct: 9   ITRIVLADDHDLLRQGLTLLLQAQADMRVVGEA----RNGLEAIKLVQEQRPDIVVMDIS 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L    A           Q        +  +    +         Y       A +  
Sbjct: 65  MAQLDGLEACERIRALAPGTQVLM---LTMHESEEYFLQSLKKGAAGYIVKKAAPAELCN 121

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-------TGREVECLT 195
            +  +   G  +       +        N  +       +  EL       TGRE+E L 
Sbjct: 122 AVRTIAQGGAFLYPGLAKALIRAYVAPQNPPEQPGSLPPQRAELDKALQTLTGREMEVLK 181

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG T+ EIA  L IS  TV  + +++M K      +  + +A+   ++
Sbjct: 182 LVAEGSTNQEIADKLVISIKTVQAHRSNMMEKLGLHDITQLVRFALHYGLI 232


>gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M13399]
 gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M04-240196]
          Length = 218

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 77/239 (32%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECIRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +  +     +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKVAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|51894297|ref|YP_076988.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857986|dbj|BAD42144.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 221

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 13/233 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
              + R   V         LA ++  +  +       +     G     +          
Sbjct: 2   DGRKIRIMIVDDQSLLRRGLAALLNRNPDMEVVGEASS-----GEEALRMAAELKPDVIL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +         R +  S              +    F          A     Y   
Sbjct: 57  MDVRMPGMDGVTATRELVRSGT--------AAGVIILTTFDDDEYIFEGLAAGARGYLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             +   +   +  +     ++       +    +  ++M  S          LT RE E 
Sbjct: 109 DAEYDELSQAIRTVAAGESLLQPQITTRVLKEFSRLSSMAASRPKARPLVEPLTERETEV 168

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ +IA  L I + TV +++ SI  K   + R  AI  A   N+V
Sbjct: 169 LRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGARDRVHAILLAQELNLV 221


>gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 223

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 77/241 (31%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  +    D L  +   +                G          
Sbjct: 3   IRILLADDHALLRQGIKRVLNFEDDLEVVGEAED---------------GQEALARTLML 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+ + +  +          R   +   +  +    +       
Sbjct: 48  KPDILLLDINMPGLTGLDVAKQLKQARS--------RVKIIALTIHDSDNYVLELLKNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFE 185
             Y     +   +   + ++      +       +   ++   ++ +     W   +   
Sbjct: 100 LGYLLKDVEPNVLIKAIHMVNEGNPFVYPKLAERLFGTSSISGDVGRMAKEIWDESRGER 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G ++ +I   LG+S  TV N++ S+  K     R+ A+ Y ++N I
Sbjct: 160 LTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKI 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 230

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 14/236 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +       V   P        ++  +  +             GA    LVR      
Sbjct: 1   MTEDAPITVLLVDDQPLLRMGFRLILEGEDDLHIVGEA-----SDGAEAVKLVRNLTPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +                 +    F              + + 
Sbjct: 56  VLMDVRMPVLDGIEATRAITAEGSP--------ARIIILTTFDVDEYAFAGLQAGASAFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
                 + +   + ++     ++       +       A               +LT RE
Sbjct: 108 LKDVAPSELIQAVRVVASGDAVVAPRVTQRLLETYVRGAAAPAPAAQAPDPLLGDLTPRE 167

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++EG ++ EIA    +S  TV  ++  I+ K   + R  A+ YA    +V
Sbjct: 168 TEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETGLV 223


>gi|24378972|ref|NP_720927.1| putative response regulator [Streptococcus mutans UA159]
 gi|24376861|gb|AAN58233.1|AE014894_10 putative response regulator [Streptococcus mutans UA159]
          Length = 215

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 34/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             + +  ++L  + E     +       D +  +                    G     
Sbjct: 1   MLMSKTKVILVDDHEMVRLGLKSFLNLQDNVEVIGEASN---------------GRQGID 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D ++      +    +            +    L    +    +    
Sbjct: 46  LALKLKPDVVVMDLVMPEMDGVEATLELLKDW--------KEAKILVLTSYLDNEKIYPV 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T   A I   +  +      I  +                K +  +   
Sbjct: 98  IEAGAKGYMLKTSSAAEILNAIQKVAKGDLAIETE-----------VDKKIKDHHNNPDL 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +
Sbjct: 147 HEDLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQ 206

Query: 243 NNIV 246
           +++V
Sbjct: 207 HHLV 210


>gi|302537227|ref|ZP_07289569.1| two-component system response regulator [Streptomyces sp. C]
 gi|302446122|gb|EFL17938.1| two-component system response regulator [Streptomyces sp. C]
          Length = 242

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 72/240 (30%), Gaps = 25/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E   S  + +    + +  +  +    +    +  L+              
Sbjct: 3   IRVVVADDQELVRSGFAMILDVQEDIEVVAEVGDGAAAVAAVERLS-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R ++                +    F +            
Sbjct: 49  -PDVALLDVRMPVLDGIEACRVISARS---------ACRTVMLTTFDSDEYVYEALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFEL 186
           + +         +   + ++     ++       +            + D     +   L
Sbjct: 99  SGFLLKDVRRDDLVHAVRVVAAGESLLAPSVARRLIEEYTAVTARPAAPDPLAAERLGVL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +  G ++ EIA  L +S +TV +++ +++ K   + R  A+  A    ++
Sbjct: 159 TARERETLLHLGRGLSNAEIAAALVVSEHTVKSHVGNVLSKLGLRDRIQAVICAYETGLI 218


>gi|256788263|ref|ZP_05526694.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289772155|ref|ZP_06531533.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289702354|gb|EFD69783.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 240

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 64/234 (27%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R D  +   V   P   D +AR    +            T   G       R       
Sbjct: 18  GRRDPIKVMVVDDHPMWRDAVAR-DLAESGFDVV-----ATASDGDQAVRRARAAAPDVL 71

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +       + +    ++         +   L         + +         Y  
Sbjct: 72  VLDLNLPGRPGVQVCKEAVGTD--------PKLRVLVLSASGEHADVLEAVKSGATGYLL 123

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREV 191
            +     +R  +        +        +       A+               LT RE 
Sbjct: 124 KSASTEELRDAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAPAAGTDDPGAPRLTDRET 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 184 EVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 237


>gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
 gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541]
          Length = 223

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 77/241 (31%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  +    D L  +   +                G          
Sbjct: 3   IRILLADDHALLRQGIKRVLNFEDDLEVVGEAED---------------GQEALARTLML 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+ + +  +          R   +   +  +    +       
Sbjct: 48  KPDILLLDINMPGLTGLDVTKQLKQART--------RTKIIALTIHDSDNYVLELLKNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFE 185
             Y     + + +   + ++      +       +    A   ++ +     W   +   
Sbjct: 100 LGYLLKDVEPSVLIKAIHMVNEGNPFVYPKLAERLFGSTAVYGDVSRMAKEIWDESRGER 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I++G ++ +I   LG+S  TV N++ SI  K     R+ A+ Y ++N I
Sbjct: 160 LTPREMDVLGCIAKGFSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYVLKNKI 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 220

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 27/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V ++L  +       +  L T ++ L  +  +    +       L             
Sbjct: 3   QTVRVLLVEDHTIVREGLKALLTATEDLEVVGEVADGRAAVEAAERLA------------ 50

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +         R +           +  P  L   ++            
Sbjct: 51  ---PDVVVMDINMPKLDGVGATREIREK--------VNAPRVLILSMYDGEEYVRPAIRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y      ++ +   +  +                 +   ++   +S          
Sbjct: 100 GASGYLLKGSGLSDLVTAIREVAGGNAFFSPTVAK----ILLQESRGERSVKEAPDPADS 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT + EGK+S EIA ILG+S  T+  +   IM K      +G +  A+R  +
Sbjct: 156 LTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVRQAIRIGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58]
 gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis
           MC58]
 gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria
           meningitidis Z2491]
 gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis
           CU385]
          Length = 218

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 9/225 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L          +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASEGAEAVRLAGERAADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L +   +    F      +       + +     +   +   
Sbjct: 64  LAATRLISA------DPALAQVRVVMLTTFEVDEYVVQSLRAGASGFLGKGSEPEELLNA 117

Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +      ++       +    LA   A+      VH  +   LTGRE E L  ++ G 
Sbjct: 118 IRVAAGGEALLSPAATKGLIARFLAQGDADEDGRDRVHAERLAALTGREREVLVQVAGGH 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 SNDEIAERLEVSPLTVKTHVNRAMSKLGARDRAQLVFIAYESGLV 222


>gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 223

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +A ++ L+  +     +       G +    V         +D  
Sbjct: 2   IRVLLVDDQTLIRQGIAMLLELEPDLEVVGAVGD-----GRAAIEAVERLRPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 +    F                Y       
Sbjct: 57  MPEMDGVTATRELHRR--------FPDVGVIILTTFDDDEYIFEGLKAGARGYLLKDISS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLT 195
             +   +  +     +I      ++    +  A                 LT RE++ L 
Sbjct: 109 EEMAEAVRTVARGEALIQPSIARKVVAEFSRLAAGSPPAPERSPLKLPAALTERELDVLK 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L I+  TV  +I++I+ K   + R+ A+  A +  ++
Sbjct: 169 ALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKAQQLRLL 219


>gi|152965947|ref|YP_001361731.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360464|gb|ABS03467.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 230

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 12/228 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D     +     +     +  + E   GA     VR    +   +D  +   
Sbjct: 1   MTTVLLVDDQALLRMGFRLVIESEPDLEVVGEASDGAVALEQVRALAPEVVLMDIRMPGV 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +A                L    F              + +   +     + 
Sbjct: 61  DGIEATRRIAAEH--------PSSRVLVLTTFDVDEYAFAALRSGASGFLVKSARPTELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWIS 198
             + ++     ++    +  +  L A Q          D    +   LT RE++ L  ++
Sbjct: 113 DAIRIVASGSSVVAPRVVRRMLDLFAPQFPTTAGEARDDGLDHRLRSLTPRELDVLRCLA 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG ++ EIA  L +S  TV  ++ +I+ K   + R  A+  A    +V
Sbjct: 173 EGSSNAEIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIAAYEFGLV 220


>gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876]
 gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W]
 gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550]
 gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24]
 gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4]
 gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407]
 gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 206

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 31/235 (13%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L  + E     VS   +    +  +   +                G     L       
Sbjct: 1   MLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQLRPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D ++      +  R +                 +    F    +           Y
Sbjct: 46  IILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGATSY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T   + I   +   +    ++      ++        +  +        D +LT RE
Sbjct: 98  LLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHD-DLTERE 149

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 150 FEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 204


>gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 220

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + E   G     L R        +D  +     
Sbjct: 4   RVLVADDQALVRGGFVALLAAQEGIEVVGEADDGEQAVRLTRELRPDVVLMDIRMPVLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A          L     +    F                +     + A +   
Sbjct: 64  LAATRTIAA------DPALTDVRVVVLTTFELDEYVFEAMRAGATGFLVKHTEPADLVRA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    A  A              ELT RE E +  ++EG T+
Sbjct: 118 VRVVAAGDALLSPGVTRRLITEFAAHAKQPPPAA-----LAELTDREREVMALVAEGLTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +S  T   +++ I+ K   + R+  +  A  + +V
Sbjct: 173 AEIGARLYLSPATARTHVSRILTKLGARDRTQLVVLAYESGLV 215


>gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51]
 gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 214

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P   + L R++  +  +     +       G     + R   F    +D  
Sbjct: 4   IRVVIADDHPLLREGLRRILEFEEGIQVVCEVGD-----GQGAINVSRTLDFDILLMDLN 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +    +            L   V  +  +           Y     D 
Sbjct: 59  MPGVNGLEACRVIRRENETIG--------ILVLTVDDSDEKVFQVLQLGVAGYLLKDVDP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+      ++     +                 L+ RE++ LT++
Sbjct: 111 KTLIDSIRKVHSGQPILSPAVTGKLLGQLVH--------PTQNRDTCGLSDRELQILTYV 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G ++ EI   L IS  TV N+++SI RK A + R+ A   AV+  +V
Sbjct: 163 VKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKLV 211


>gi|302561047|ref|ZP_07313389.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478665|gb|EFL41758.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 227

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 66/225 (29%), Gaps = 9/225 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L R +      +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVRLAREERADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     +   +   
Sbjct: 64  LAATRMISA------DPELAGVRVVILTTFEVDDYVVQSLRAGASGFLGKGSEPGEMLNA 117

Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +      ++       +    LA    +          +   LT RE E L  ++ G 
Sbjct: 118 IRIAAGGEALLSPVATKGLIARFLAQEGTSEADRDPARAERLDSLTVREREVLVQVAGGH 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 SNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 222


>gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 254

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 12/229 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D       +   +S    +  + E       L         Q+ +++V       
Sbjct: 9   LLIVDDHPLFRQGVRAALSTYQDILVVGEASSGEEALAWMNAAPPNQEPNTVVVDLNLPG 68

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +       +    Y  +         V+ +  +         + Y S   + A +   L 
Sbjct: 69  MNGLELTRQLRLNYPGVGIV---VLSVYESDEQAFNALRAGASAYRSKDVNPAELAQVLR 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--------LTGREVECLTWI 197
            +     +I    L +   +A    + F++         E        L+ RE+E L  I
Sbjct: 126 RVARGEYVINDVVLDD-PKVAGRVLSQFRNLPQDLTNLPEVEFPLFTPLSDREIEVLERI 184

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L IS  TV N+I+SI+RK +   R+ A+ YA+R   +
Sbjct: 185 AAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQAVLYALRRGWI 233


>gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
 gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis
           H44/76]
          Length = 218

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECIRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|313832363|gb|EFS70077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
          Length = 218

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 67/241 (27%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +     S    L    D +  +      +     +  +             
Sbjct: 3   DPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRM------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +  S  D           L    F            
Sbjct: 50  --PVDVALMDIRMPQMDGVEATRRITASPLD--------TKVLILTTFDLDEYVYAALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++       +  L      +         +   
Sbjct: 100 GASGFLLKDARPTELLSAIRNVADGDAVVAPSAPRRL--LDHVVPTLPNDPKAADKRLSV 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G T+ EIA  L ++  TV  +I  ++ K   + R G + +A    +
Sbjct: 158 LTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 221

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E   +    +      +  +       +    +  +               
Sbjct: 2   IRVFLVDDQELVRTGFRMVLNAQPDIEVVGEAGDGQAAIDALGEV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +              L    F              
Sbjct: 47  EADVVLMDVRMPRMDGVEATRRICATPGAP--------RVLILTTFDLDEYAFAAIKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +  G+ ++     ++       +       A           +   LT
Sbjct: 99  SGFLLKDVPPNELVNGIRVVHSGDAVVAPSTTRRL---LDRFAAHLPDGQAGRPELDALT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G ++ EIA  L ++  TV  ++  ++ K   + R+ AI YA    +V
Sbjct: 156 AREREVLILVAKGLSNQEIAERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGLV 214


>gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 206

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 31/235 (13%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L  + E     VS   +    +  +   +                G     L       
Sbjct: 1   MLVDDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSQLALQLRPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D ++      +  R +                 +    F    +           Y
Sbjct: 46  IILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGATSY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T   + I   +   +    ++      ++        +  +        D +LT RE
Sbjct: 98  LLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHD-DLTERE 149

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 150 FEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 204


>gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 75/239 (31%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       +  +      +  +                    G     + R  
Sbjct: 3   IRIVIADDQAMVRVGLKLVVESEPGMEVVGEAAD---------------GLEAVTVARRT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +     D        P  +    F T            
Sbjct: 48  RPDIVLMDISMPRMDGLTAARKL----LDWPDP----PKVVMLTTFDTDENLYAALRAGT 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        ++   + ++     ++       +  +A++     +       +  +LT
Sbjct: 100 SGFLLKVSPPEQLVEAIRVVVGGDALLDPAVTTRV--IASFAG---RHDPAPPPQLADLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L +++ G T+ EIA  L +   TV  ++A ++ K   + R+ A+ +A  + +V
Sbjct: 155 PRELEVLRFLARGLTNAEIAGQLFVGEATVKTHVARVLMKLHLRDRAQAVVFAYESGVV 213


>gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 215

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L    +    +  + E   G     ++         +D  +     
Sbjct: 2   RIVIADDHHIVRKGLRFFFATQKDIDVVGEASTGTEALRVIEQTKPDLVLMDLSMPDMDG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  +  A         ++          +      I         Y     +   +   
Sbjct: 62  IEATKK-AAVLFPSISIII-------LTSYSDQQHAIPALQAGAKAYQLKDTEPEELVKT 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKT 202
           L  +      +    +        +     +  ++    K ++LT RE + L  I+ GK+
Sbjct: 114 LRQVHSGEYKLSSAIMP-------HVLTHMRTQHEPEKEKYYQLTRREKDVLMEIASGKS 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L IS  TV  ++++++ K     R+ A  +AV++++
Sbjct: 167 NKEIAASLFISEKTVKTHVSNLLAKLDVADRTQAALFAVKHHL 209


>gi|291300770|ref|YP_003512048.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569990|gb|ADD42955.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     S    L    D +  +                    GA    L+R  
Sbjct: 2   ITVVLVDDQPLLRSGFRALLDLEDDIEVVAEASD---------------GAQGLALIRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +      +  R +A          L     +    +              
Sbjct: 47  LPDIALLDIQMPDMDGIEATRHIAA------DPRLAAVRVVILTNYGFDEYVYDALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +             + +      ++       +  ++ Y      +      +D  LT
Sbjct: 101 TGFLVKDIQPDDFLHAVRVAARGDALLAPSITRRL--ISRYVTQPRNTGTGVGLED--LT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +++G T+DEIA  + IS  T   +I   M KTA + R+  +  A  + +V
Sbjct: 157 NREREAVALVAQGLTNDEIADHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYESGLV 215


>gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 212

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P   + L R++  +  +     +       G     + R   F    +D  
Sbjct: 2   IRVVIADDHPLLREGLRRILEFEEGIQVVCEVGD-----GQGAINVSRTLDFDILLMDLN 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +            +    L   V  +  +           Y     D 
Sbjct: 57  MPGVNGLEACRVIRREN--------ETIGILVLTVDDSDEKVFQVLQLGVAGYLLKDVDP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+      ++     +                 L+ RE++ LT++
Sbjct: 109 KTLIDSIRKVHSGQPILSPAVTGKLLGQLVH--------PTQNRDTCGLSDRELQILTYV 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G ++ EI   L IS  TV N+++SI RK A + R+ A   AV+  +V
Sbjct: 161 VKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKLV 209


>gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri]
          Length = 233

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P         +  
Sbjct: 18  IKACRNNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWREYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 198 EGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232


>gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 224

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 72/229 (31%), Gaps = 11/229 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            TS    +    D +         ++    +  + + V G      V         +D  
Sbjct: 1   MTSSAIRVLIADDQMMVRQGFTVLLNTQPDIEVVGQAVDGLDAIAKVAELAPDVVLMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +A+           +   L    F              + +       
Sbjct: 61  MPELGGIQATGRIAVD--------FPQVKVLVLTTFDLDEHVYDALRAGASGFLLKDASA 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   + ++     ++       +  +A +             +  ELT RE E L  I
Sbjct: 113 DQLAEAVRVVAAGDALLAPGITRRL--IAEFSRLDTTPRAPLKVRVGELTERETEVLALI 170

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++  TV  ++  I+ K + + R+ A  +A  + +V
Sbjct: 171 AQGMSNAEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESGLV 219


>gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 214

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     V  L  R + +  +                    G     +    
Sbjct: 3   IKILLADDHKILREGVKALLNRQEDMEVVAEAGN---------------GEEALSIAGEI 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +                 +   ++              
Sbjct: 48  RPDVTVMDVMMPQMDGIEATRRIVEDG---------SSRVVALSMYADRSFVSEMLKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +      +          ++   A ++ S          LT
Sbjct: 99  LGFLLKDCASTELVEAVRKVMDGEIYLGPS-------ISHIVAKLYVSSLHDPDDIEPLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++EG T+ E+A  L +S  TV  +   IM K   K  +  + YA+RN ++
Sbjct: 152 PREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMNKLKLKNLADLVKYAIRNGMI 210


>gi|254477011|ref|ZP_05090397.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp.
           R11]
 gi|214031254|gb|EEB72089.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp.
           R11]
          Length = 239

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 21/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  +            +  + E  G  H +    D   +          +  + V    
Sbjct: 10  ILEMLDAASTVDGLREIVERVCESFGVDHAMYHWVDSAGDHYY----FGTYKDEWVARYQ 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTFDVARI 140
                +   V+    + F PV     +  + PA             +  Y          
Sbjct: 66  EKSYVRVDPVIIGCYQRFHPVDWRRLDWSSKPAREFMQDARDHDVGNQGYSIPIRGPKGQ 125

Query: 141 RIGLMLL----FPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECL 194
                +            +     ++ L+  Y          D   G+   L+ RE++ L
Sbjct: 126 FALFTVSNNCDDATWDNFIERHSRDLILMGHYLNRKVLEFEPDRGPGQVQPLSPREIDAL 185

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T ++ G +  ++A  L IS +T+  YI S   K      + AIA A+   ++
Sbjct: 186 TLLAMGYSRAQVAQTLSISEHTLRVYIESARFKLGAINTTHAIARALSLGLI 237


>gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 217

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G                +D  +     
Sbjct: 3   RILLADDHALFRQGLKSLLEAEGDFRVVGEAKDGWEALRHALEAKPDVILMDIQMPGLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +             +   +   ++                Y     D   +   
Sbjct: 63  VQATKTILQEW--------PQAKVIILTMYRQDAYVFEAVKAGARGYLLKDTDAKELIEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    I        +     +       EL+ RE++ L  +++G T+
Sbjct: 115 IRRVHAGEVLLDAELAGRI------IQDFRARKEQSLPLHAELSEREIQILKLVAQGYTN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV N ++ I +K     R+ A  YA+R  +
Sbjct: 169 LEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210


>gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 11/219 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +     +  + E   G      VR        LD  +      +  
Sbjct: 4   ADDQELVRAGFGMILDAQPDIEVVAEAGDGRQAVDAVREHAPDVLLLDVRMPVMDGLEAA 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R                   +    F              + +         +   + ++
Sbjct: 64  RR--------VCAEHPACKVIMLTTFDVDDYVFDALYAGASGFLLKDVRRDDLVHAVRVV 115

Query: 148 FPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
                ++        IG + A +A    +     G+  E LTGRE E L  ++ G ++ E
Sbjct: 116 DSGEALLAPSVTRRVIGEVTARKAAGAAAVPRPLGRLLESLTGREAETLKLVARGMSNAE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L +S +TV  +++++++K   + R  A+ +A    
Sbjct: 176 IAAELVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEAG 214


>gi|297161250|gb|ADI10962.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 238

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 58/222 (26%), Gaps = 5/222 (2%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-----LDSIVSSDWP 83
             +    ++ +D    W   +       G +            ++      D +V     
Sbjct: 13  GEERPVTVMVVDDHPMWRDAVARDLSEAGFAVVATAGDGPQAVRRAKAANPDVLVLDLNL 72

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L       +          P  L         + +         Y   +     +   
Sbjct: 73  PGLPGVEVCKQLVGGEPGPPGPRVLVLSASGEHADVLEAVKSGATGYLLKSASTEDLLDA 132

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +        +       A               LT RE E L  +++G + 
Sbjct: 133 VRRTAAGEPVFTPGLAGLVLGEYRRLATDPAPAAPDRPVAPRLTEREKEVLRLVAKGLSY 192

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 193 KQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 234


>gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 231

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 13/223 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRCMA 91
           ++ +D        + A  EY G  +  +        + +      ++ SD     V    
Sbjct: 7   ILLVDDEPGVRESVQAYLEYSGDFNVKVASNANQAWELIEKEIPDLIISDIMMPQVDGYQ 66

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL---- 147
              K +     Q    +F        + I       + Y S  FD   +   +  L    
Sbjct: 67  FLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGCDAYLSKPFDPEELEAIVKNLLERR 126

Query: 148 -----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                     + L +   EI  + A                 ELT RE   L  ++EG  
Sbjct: 127 KVSIKASSESVKLEEIAQEIREIKAQIGQQPHLVTTPSPIKIELTPREQSVLDLVAEGLM 186

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 187 NKEIASRLNTSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 229


>gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 221

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  + ++     +             G      VR        +D  
Sbjct: 3   IRVLIADDQMMVREGFSVLLNAMPDIEVVGEA-----VNGREAVERVRELAPDIVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +  ++             L    F              + +       
Sbjct: 58  MPELNGIEATREIVAADG--------AAKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+  G+ ++     ++       +    +  +   +          +LT RE E L  I
Sbjct: 110 RRLAEGVRVVASGEALLAPTVTRRLITEFSKLSEAPRLMPAAHAAYGDLTERETEVLVLI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 170 AQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 218


>gi|126665815|ref|ZP_01736796.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Marinobacter sp. ELB17]
 gi|126629749|gb|EBA00366.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Marinobacter sp. ELB17]
          Length = 219

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 17/232 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +       +   P     + ++I ++  +         T+        +          
Sbjct: 2   SDTPASILLIDDHPLLRKGIKQLIEMEPDLEVAGEASNATDG-----VRIALELEPDLIL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      + +R +                 +   V     + +       + Y   
Sbjct: 57  MDLNMPDVSGIEALRQLRAHNIS--------SRIIMFTVSDQQDDVVEALRAGADGYLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             +   +   L        +I         LLA    N           D  LT RE + 
Sbjct: 109 DMEPEDMIKQLHQAAVGKLVISERLT---SLLADALRNNKSQQPARPDFDS-LTPREKDI 164

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I+EG ++  I   L IS  TV  ++  +++K   ++R     +AV   +
Sbjct: 165 LNLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216


>gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
 gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 241

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 15/241 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S+++    +S L A +        +   +  +    G +H  L+     ++  L  ++ 
Sbjct: 1   MSYMTTSERQSLLSAELAVAGTRGLFAQALGRVATAFGLAHATLMHAPSPEDLLLKPLLI 60

Query: 80  -SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGM 126
            S  P   VR    +   +      R  E   P+   L               +     +
Sbjct: 61  ESSLPAAYVRDFDRANMMRGCPFGLRLRESAVPLAWHLNDVVNGQAFPAELRALMLHHAI 120

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFE 185
                  T  V   R+       +   + +  + E+ ++  +  + + +   +       
Sbjct: 121 PAGVAMPTIAVDGRRLVFWFCG-ERAALGQSEVNELAIIILHALDAYNTVRRNEESAHNA 179

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 180 LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
 gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621]
          Length = 214

 Score =  125 bits (313), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 15/224 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMLLNLRPELEVVG-----TATDGDEVIQKVKELHPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F              + Y     +   I
Sbjct: 56  MNGVEGTRLVREQ--------FPHIKVLMLTTFSDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D      ++   +            +  +LT REV+ L  I  G
Sbjct: 108 AQAILTVHSGGVVLPQDITA--QIIEELKKTKVAVECNPPEQLKQLTEREVDVLRAIGLG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 166 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209


>gi|262165533|ref|ZP_06033270.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223]
 gi|262171689|ref|ZP_06039367.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451]
 gi|261892765|gb|EEY38751.1| DNA-binding response regulator LuxR family [Vibrio mimicus MB-451]
 gi|262025249|gb|EEY43917.1| DNA-binding response regulator LuxR family [Vibrio mimicus VM223]
          Length = 212

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 2   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 57  DVSMPIMNGIEATRLIKEE--------VPNTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 109 ISALKMVQAIKTVNQGATYFCESTTSTL---------FSQEILPTATKPNPLSRREEAIL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 160 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 211


>gi|226365940|ref|YP_002783723.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244430|dbj|BAH54778.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 220

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +          L      ++ +            +  L               
Sbjct: 3   ITVFIADDQAMVRQGFGALLASQPDISVIGDAPDGAVAVSEVKRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +  +        ++         F          +   
Sbjct: 48  RPDVVLMDVRMPEMNGLDAARVILSAGF---DPPVRVLM---LTTFDVDDYVYEALSIGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +    A   +   +          LT
Sbjct: 102 SGFMLKDAPAEELIRAVRVVADGEALLAPTVTRRLI---ADVTSRRSTARRKPAALSALT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G ++ EIA  L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 159 PREREVLELIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217


>gi|300791059|ref|YP_003771350.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800573|gb|ADJ50948.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 62/242 (25%), Gaps = 35/242 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E        +      +  +               L               
Sbjct: 2   IRVVVVDDQELMRVGFRMVLGAQADIDVVGEAGDGAQAIELAERL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +                 L    F           G  
Sbjct: 47  RPDVVLMDVRMPVLDGVEATKRIVADGT---------ARVLVMTTFDLDEYVYAALQGGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
           + +         +   L  +     ++       +        + F        +D    
Sbjct: 98  SGFLLKDTQPDHLVSALRAVASGDAVVSPSVTRRL-------LDRFVGTGGSPMRDTAEL 150

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  I++G ++ EIA  L +S  TV  ++  I+ K   + R  A+  A   
Sbjct: 151 DVLTDREREVLVLIAKGMSNLEIADALFLSEATVKTHVGRILAKLELRDRVQAVVLAYET 210

Query: 244 NI 245
            +
Sbjct: 211 GL 212


>gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
 gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus
           communis]
          Length = 234

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 68/232 (29%), Gaps = 17/232 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            +  A +       +            G +      +    +         DWP D +  
Sbjct: 3   DEFAAALEACATIDAVKALFKRRIAAHGYTASACGAFLPADKGPEPHFFFQDWPPDWLEL 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-------------DNRYCSLTFD 136
                       +        P      +     +                +        
Sbjct: 63  YVNRNFVAADYGVAEARRRIAPFTWREAKAERTLSRAEQDIWDTVVEWGWTDGLSVPIHG 122

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVEC 193
                  ++ +  K + +      ++  LA       ++             LT RE+EC
Sbjct: 123 PGGYF-AIVTMAGKEQPMPPALRGKLQQLAFLTHERCRALTGLAPVTDPQATLTHRELEC 181

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L W++ GKT  +IA +LG+S+ T   +I    RK   +TRS A+A  V + +
Sbjct: 182 LRWVAAGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSGL 233


>gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114]
          Length = 230

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   +        +  + + +   ++L          K D  +  ++P    +    +  
Sbjct: 16  IKTCNNNKDINQCLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGL 75

Query: 96  DKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIG 143
            +Y  V+        P+   + E                 +G+   +       +     
Sbjct: 76  LEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGM 135

Query: 144 LMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L             + L        +L +   N  K        D  LT RE ECL W S
Sbjct: 136 LSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWAS 195

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK++ +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 196 EGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 230


>gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 221

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 25/237 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IVL  +DE     ++    R      +                    G +   L   
Sbjct: 6   PLRIVLVEDDELFRLGLATRLQRDTNFEIVAEACD---------------GETAVELTNQ 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     LD  +      +  R +   +      +L   +     +           A  
Sbjct: 51  YLPDIVLLDIGLPGIGGIEACRQI--KQHHPNLPILVLTSHSQKSLI------ERLIAIG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N YC    +   + + L  +        +    EI   AA+      + D+  G D  L
Sbjct: 103 VNGYCLKGIEAEHLILALRSVAVGASWWDQTGTTEIQ--AAFSKKPTINCDIIEGIDNPL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE E L  I+ GKT+ EIA  L I+  TV  ++ +I++K   + R+ A   A+++
Sbjct: 161 TQREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAILQKLDVRDRTQAAIIALQH 217


>gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 71/222 (31%), Gaps = 15/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L    +       + E   G +   +    +     +D ++      
Sbjct: 9   ILIVDDHAIVRQGLRALFALQPDCKVVGEADSGEAAVSMAALLVPDIILMDLVMPGLDGV 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +          R   +    FH   +           Y     D   +   +
Sbjct: 69  EATRRVKQAS--------PRSQVIVLTSFHEDAQIFPALRAGALSYLLKDVDPDELVETV 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +         + KS         EL+ RE++ L  I++G+++ 
Sbjct: 121 RRAVRGESVLHPQVAARV------VHELRKSKQTSTNPFAELSERELDVLRLIADGRSNA 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++++I+ K     R+ A  +A +  ++
Sbjct: 175 EIASRLSISEKTVKGHVSNILSKLYLLDRTQAAVFAWQQGLM 216


>gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei]
          Length = 232

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK+S +I+ ILG S  TV  ++ +   K  T  R
Sbjct: 198 EGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232


>gi|52424333|ref|YP_087470.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306385|gb|AAU36885.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 34/237 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  +++  +       +  L    +    +                    G     L  
Sbjct: 20  EKTKVIVIDDHPLMRRGIKQLIELEEQFEVVGDAGS---------------GNEGVELAI 64

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +     D           +   V  +  +       
Sbjct: 65  KTSPDLIILDLNMKGLSGLDTLKVLRQEGVD--------ARIVILTVSDSKADIYALIDA 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   +  +     I+                N+             
Sbjct: 117 GADGYLLKDTEPDTLLAQIKQIAQGEIILSDS-----------IKNLLVERHPAHEPIHA 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A    + 
Sbjct: 166 LTDREMDVLQLIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLE 222


>gi|288917708|ref|ZP_06412071.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350923|gb|EFC85137.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 243

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D     +     +     +  + E   G +   L          +D  +    
Sbjct: 3   TTVLLVDDQPLLRMGFRMVLDSQPDLRVVGEAGDGGTAVRLTAELAPDVVLMDVRMPGVD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +  S              L    F              + +         +  
Sbjct: 63  GIEATRRIVASGG--------ASKVLILTTFDLDRYAFAGLRAGASGFLLKDVPPDDLLA 114

Query: 143 GLMLLFPKGRIILRDRLWEI--------------GLLAAYQANMFKSYDVHWGKDFELTG 188
           G+  +     ++       +              G  A ++            +   LT 
Sbjct: 115 GIRTVAAGDAVVAPSTTRRLLDGFAHRLPDLDDSGSGAGHRPFGAGPGRDGADRLARLTD 174

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  ++ G ++ EIA  L ++  TV  ++  I+ K   + R  A+ +A    +V
Sbjct: 175 RERDVLGEVAAGLSNAEIATRLVLAEGTVKTHVGRILGKLELRDRVQAVVFAYEIGLV 232


>gi|328880752|emb|CCA53991.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 227

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 63/246 (25%), Gaps = 25/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  +   + ++L  +     +    L      +              ++ AL        
Sbjct: 1   MTDKTPVIRVLLADDQSLVRAGFRALLDAQPDIEVAGEAADGGEALEQVRAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +  R +           L     +    F       
Sbjct: 53  -------RPDVVLMDIRMPRLDGLEATRRIT------DDPGLTDVRVVMLTTFELDEYVF 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +     +   +   +  +     ++       +      +           
Sbjct: 100 EAIRAGASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRL----IEEFAARSKAPGAA 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E +  +  G ++ EIA  L +S  T   +++  M K   + R+  +  A
Sbjct: 156 ASLGALTEREREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLA 215

Query: 241 VRNNIV 246
             + +V
Sbjct: 216 YESGLV 221


>gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 212

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G       R        +D  +     
Sbjct: 3   RILVVDDHPVVREGLVAILEAQEDLTVVGEAGDGDQAVQQYRDLKPDVVLMDLAMPGTDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              ++ +                 +    + T    +       + Y         I   
Sbjct: 63  VQAIQEIKR-----IDP---NARVVVLTAYDTDERILQAVQAGASGYLLKGAPREDIFRA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +++  G ++         ++A    N           + ELT RE++ LT ++ G  +
Sbjct: 115 VRVVYRGGSLLEP-------VVAGKLLNRMGDLLRGEPVEEELTARELDVLTLMARGLRN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I+  TV  +  +I RK     R+ A++ A++  +V
Sbjct: 168 KEIAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQRGLV 210


>gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 233

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 78/236 (33%), Gaps = 13/236 (5%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQK 73
           + ++R+     +    D       +   +++   +  + E   G                
Sbjct: 4   DGKRRSRVAIRILLADDHALLRQGIKRVLNFEDDLEVVGEAEDGQEALARTLMLKPDILL 63

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      D+ + +  +          R   +   +  +    +         Y   
Sbjct: 64  LDINMPGLTGLDVTKQLKQARS--------RVKIIALTIHDSDNYVLEMLKNGALGYLLK 115

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDFELTGRE 190
             +   +   + ++      +       +     ++     M K       +   LT RE
Sbjct: 116 DVEPNVLIKAIHMVNEGNPFVYPKLAERLFGTPAISGDVGRMAKEIWD-ESRGERLTPRE 174

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ L  I++G ++ +I   LG+S  TV N++ S+  K     R+ A+ Y ++N IV
Sbjct: 175 MDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYVLKNKIV 230


>gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 230

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 68/224 (30%), Gaps = 8/224 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D            S    M  + E   G       R        +D  +     
Sbjct: 9   RVLVCDDQALVRTGYVTIFSAQPDMQVVGEAENGHEAVQAARRLRPDVVVMDIRMPLLDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A  + +    VL          F+             + +       A +  G
Sbjct: 69  IQATRQLAGPDTEDAPKVL------VVTTFNVDAYVYDALRAGASGFLLKDAPPAELVNG 122

Query: 144 LMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +     ++       + G  A +      S          L  RE+E L  I+EG +
Sbjct: 123 IRTVARGEALLAPAVTRHLIGHFAQHLRPADTSRPARQDVVRALAPRELEVLQLIAEGLS 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + I+  TV  Y++ I+ K   + R  A+  A R  +V
Sbjct: 183 NAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAYRVGLV 226


>gi|16080942|ref|NP_391770.1| two-component response regulator YxjM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311860|ref|ZP_03593707.1| hypothetical protein Bsubs1_20996 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316184|ref|ZP_03597989.1| hypothetical protein BsubsN3_20907 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321096|ref|ZP_03602390.1| hypothetical protein BsubsJ_20855 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325380|ref|ZP_03606674.1| hypothetical protein BsubsS_21006 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|20141933|sp|P55184|YXJL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yxjL
 gi|1783236|dbj|BAA11713.1| yxjL [Bacillus subtilis]
 gi|2636426|emb|CAB15917.1| two-component response regulator [YxjM] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 218

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+ R +     P   +    +I     ++ +          G     L +        +D
Sbjct: 4   DKIRVALADDQPLVREGFRYVINAQTDMTVSGEAG-----DGHDIIALAKQTKPDVILMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  + +           L     +    F T              Y     
Sbjct: 59  VQMPRCSGIEAAKDIMS--------ALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        I       +I      +    K            T RE+E L 
Sbjct: 111 LPEELIDAIRAAARGEAIFRTVTAAKI----ISETFRAKQQTHAEELAEPFTKRELEVLQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  +++IA  L +S +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 167 QMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|297157797|gb|ADI07509.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 220

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  + T +  +  +                    GA    L    
Sbjct: 3   IRVLLADDQPLVRAALRMVITDTPDVEVVGEAGD---------------GAEAVRLTGEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 +    F              
Sbjct: 48  APDVVVMDIRMPGMDGIEATRLITTGPGT--------TRVVVLTTFDDDDYVYGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +      +  I   + ++     +I       +       A    +      +   +T
Sbjct: 100 SGFLVKDMALDDILAAVRVVASGDALIAPSVTRRLI---KEFAARPATTPPPRAELGGIT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +  G ++ EIA  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 157 DREREVLTLVGSGLSNAEIADRLCISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLV 215


>gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
 gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM
           4582]
          Length = 237

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
            +D        +    + +G   +LL      ++    ++V ++ P              
Sbjct: 12  RIDNFSQLDEVLAERCQAIGFDGYLLGVTGHGRD-INQAVVLTNHPPAWRETYTRLGYIN 70

Query: 98  YYNVLQRPTELFCPVFHTL---------PENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
               +        P+                     G+ +        V   +  L L  
Sbjct: 71  TDPTVAHCLGGLFPLEWQACPITAETAPFWQEASYYGLAHGVSFPLHGVQGEQGILSLSL 130

Query: 149 PKGRI-----ILRDRLWEIGLLA-AYQANMFKSYDVHWG-KDFELTGREVECLTWISEGK 201
            + R      +++ R  E+ +L      +  +  D         L+ RE+E   W + GK
Sbjct: 131 GRQRQRDYRELMQQRWGELYILRDILLHHCIRLLDEKNKLTATVLSPREIEVCKWFTIGK 190

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T+ EI+ IL  S   VN +  +I RK    +R  AI  A+ + 
Sbjct: 191 TTWEISRILNCSEANVNFHFKNIRRKFNVSSRGAAIIKAIASG 233


>gi|291299967|ref|YP_003511245.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569187|gb|ADD42152.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L +        +D  + +   
Sbjct: 4   RVLLADDEALIRAGLAAIIDAEADLEVVAEAADGVDAVALTKRHRPDVVLMDVRMPNVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +      +          +    F              N +         +  G
Sbjct: 64  IEATRQI--LRIPELSP-----KIIVVTTFDNDDYVYEALRAGANGFLLKRTPPDDLLAG 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++    +  +                       LT RE E L  ++ G ++
Sbjct: 117 IRVVARGDALLFPAAVRRLA---------AGHTGRSTLDAAGLTEREAEVLRLMARGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++A I+ K   + R+ A+  A     V
Sbjct: 168 AEIAARLFLSAETVKTHVAKILAKLRVRDRTQAVIKAYEAGFV 210


>gi|226310881|ref|YP_002770775.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226093829|dbj|BAH42271.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 602

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 27/246 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRW 66
             T  V  +   +D + R++ +D        + ++ E             GA    L   
Sbjct: 367 LVTCLVPRMVESADEIIRLVIVDDHSFIRESLRSILEGQRDLRVVGLAEDGAQAVELCEE 426

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +       + +        +  ++         F    +        
Sbjct: 427 LEPDLVLMDLEMPNMDGITATKRIKEK-----WPGIRILVLST---FQDTEKAKEIMRSG 478

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDVHW 180
            + Y   + +   +   + L+   G +I +D   +  +L     N      +        
Sbjct: 479 ADGYLLKSIESRELAETIRLVHRGGTMIAQDLFHK--MLDGQPVNGQEDLLVAPKQSEKD 536

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              + LT RE E L  +++G     IA  L +S  TV NY +++  K   + R  A+   
Sbjct: 537 ENAYGLTKREQEILQMLAQGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNRDDAVQKG 596

Query: 241 VRNNIV 246
               +V
Sbjct: 597 KMEGLV 602


>gi|161724874|emb|CAO85748.1| PmrR protein [Pseudomonas sp. RW10S2]
          Length = 236

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 14/215 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D+L+ +     T +    + A   ++G  +            K    + S++      
Sbjct: 4   MGDMLSAVYDARDTQTLLEEVKAAARHLGFDYCAYGLRTPLPVTKPRIFMLSNYSRPWCD 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
               +        ++       PV              +    AG+ + +     + ++ 
Sbjct: 64  HYHANGYLLLDPTVRHCQRSMQPVVWGDEIFADAPQLWDEARQAGLRHGWAQSCLEGSKG 123

Query: 141 RIGLMLLFPKGRI------ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L      I          R+  +  +A    +   S          L+ RE E L
Sbjct: 124 GGMLTLARSGEGIGEGELRAHETRMRWLANVAHQGFSRLLSDSWQPQPQSPLSEREREVL 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            W ++GKT +E+A IL +S  TV  +  +   K  
Sbjct: 184 RWAADGKTLNEVADILTLSIETVKFHTRNAGAKLG 218


>gi|321313453|ref|YP_004205740.1| two-component response regulator YxjM [Bacillus subtilis BSn5]
 gi|320019727|gb|ADV94713.1| two-component response regulator (YxjM) [Bacillus subtilis BSn5]
          Length = 218

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 21/233 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R +     P   +    +I     ++ +          G     L          +D
Sbjct: 4   DNIRVALADDQPLVREGFRYIINAQPDMTVSGEAG-----DGHDIIQLAEQTKPDVILMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  + +           L     +    F T              Y     
Sbjct: 59  VQMPHCSGIEAAKDIMS--------ALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVEC 193
               +   +            + ++     A   +  F++      ++     T RE+E 
Sbjct: 111 LPEELIDAIRAAARG------EAIFRTVTAAKIISETFRAKQQPHPEELAEPFTKRELEV 164

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G  +++IA  L +S +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 165 LQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 216

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 30/239 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            ++++L  + E     ++ +    + +  +                    G     L   
Sbjct: 6   PISVLLVDDHEMVRIGLAAVLGTEEGIEVVGEAGS---------------GEEGIRLASE 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +  R +           L     +    +    +        
Sbjct: 51  YKPNVILMDLVMDGMDGIETTRQVTRL--------LPETKVIVLTSYLDDEKMYPVIEAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T   + I   +        ++           A+   N F+          EL
Sbjct: 103 AFSYLLKTSRASEIADAIRAAARGQSVLESQV-------ASKMMNRFRQPQAEAPAHTEL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E L  +++GK++ +IA  L I   TV  ++ +++ K   + R+ A  YA +N +
Sbjct: 156 TDREMEVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKLGVEDRTQAAIYAYKNGL 214


>gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 237

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 16/232 (6%)

Query: 31  DLLARMIPLDCTVSWT-MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           DLL R +  +  +      +       G  +     +    ++    +  +++P+   R 
Sbjct: 6   DLLLRKLSCEKDLQTAYRLVLNFFNNQGFEYCAFAAYLGSPDKHTSKVNLNNYPYGWDRL 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
              +       ++    +   P+                    G+   +     D     
Sbjct: 66  YEQNGYASNDPLVAHCNQSSLPILWDETVFAHAPKLWRELNRQGLKYGWTQSVHDEQGAH 125

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-------HWGKDFELTGREVECL 194
             L  L      I  +  +     A + +    +                 L+ RE+E L
Sbjct: 126 CSLFSLARSHCPIDIEEHYANLGYAIFASQRLHALASKKLSDALAIQPKCHLSPREIEVL 185

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKT+ E+  IL +S  TVN ++ S MRK     +  A+A A + +++
Sbjct: 186 RWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAKAAQIHVI 237


>gi|332290267|ref|YP_004421119.1| transcriptional regulator NarP [Gallibacterium anatis UMN179]
 gi|330433163|gb|AEC18222.1| transcriptional regulator NarP [Gallibacterium anatis UMN179]
          Length = 209

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 34/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +++  I++  +       ++ L    D    +                    G     L 
Sbjct: 1   MKKTTILVIDDHPLMRRGITQLLQLDDSFEVLAEASN---------------GTEGLALA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +      D+++ + L + D               V     +      
Sbjct: 46  KQFSPDMIILDLNMKGMSGLDVLKALRLDDID--------ARIAVLTVSDARSDIFALIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   + + L  +     ++                              
Sbjct: 98  AGADGYLLKDTEPDTLLVQLKKIAEGQVVLSDA-----------VKQRLLDNHSANDPLQ 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A    + +
Sbjct: 147 LLTDREMDVLKLIATGLSNKQIANQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEH 205


>gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 230

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 11/226 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V     M  + E   GA    L R        +D  +      
Sbjct: 6   VLLADDQALLRSAFRVLVDSEPDMRVVGEAADGAEAVELARSTGVDVVLMDIRMPGTDGL 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R ++          L     +    F      +         +     +   +   +
Sbjct: 66  TATRTISA------DPELAGVRIVMLTTFEVDEYVVQALRAGAAGFLGKGAEPDELLNAI 119

Query: 145 MLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +      ++       +       A            +      LTGRE E L  ++ G
Sbjct: 120 RIAAAGEALLSPAATKGLIATFLAQAPDADGDLGRSTAYSELLDALTGREREVLVLVAGG 179

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++D+IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 180 HSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 225


>gi|290958411|ref|YP_003489593.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647937|emb|CBG71042.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G      VR        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQTVRTTEVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   +          P  L    F       +      + +         +   
Sbjct: 64  VEATRRICAEQ----DP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      K+ E LT RE E +  +++G +
Sbjct: 116 IRAVHSGDAVVAPSTTRRL--LDRFAPMLPSTGSEPRHKELERLTEREREVMILVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
 gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271]
          Length = 214

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 72/224 (32%), Gaps = 15/224 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMLLNLRPELEVVG-----TATDGDEVIQRVKELHPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F              + Y     +   I
Sbjct: 56  MNGVEGTRLVREQ--------FPHIKVLMLTTFSDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D      ++   +            +  +LT REVE L  I  G
Sbjct: 108 AQAILTVHSGGAVLPQDITA--QIIKELKKTKVAVECTIPEQLAQLTEREVEVLREIGLG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  
Sbjct: 166 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209


>gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 209

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 24/222 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     + +++ L+                G     +          LD  +   
Sbjct: 9   LIDDHPLMRQGIRQILELEDNFVIVGEASN-----GTDGISIALDTNPDLIILDLNMKGI 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +R +     D           +   V     +         + Y     D A + 
Sbjct: 64  SGLDTLRALRKHGID--------SRIVVLTVSDEQSDVFALMDAGVDGYLLKDSDTAELV 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                               LT RE + L WI+ G 
Sbjct: 116 ENIRKAAQGETVLSES-----------VKQHLLERRPENDPLSVLTDRERDVLQWIATGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 165 SNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206


>gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis TXDOH]
 gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
 gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
          Length = 237

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLLA +            +      +   +        +   +      S++P    R
Sbjct: 5   AEDLLAGLDSARSEDEAFRSIETAATALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWKR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
               +       +L        PV                    G+   +   +FD    
Sbjct: 65  RYVEAGFLDVDPILAHGRRSQQPVVLNETLFASSHQMWVEAQSFGLRFGWAQSSFDAYGG 124

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+  +  +   +      R+  +   A           +    +  LT REVE L
Sbjct: 125 MGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 185 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 211

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 65/227 (28%), Gaps = 24/227 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS 79
           S V  +    D       L   +     M  +     G     L          +D  + 
Sbjct: 6   SNVIRILLADDHPILGQALTMFLQCESDMTVIGHAGDGREALELFHQHQPDVALMDLRMP 65

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  +            +    +    F    +           Y     +   
Sbjct: 66  KMEGADAIAAICAK--------FKHARIVVLTTFDGDEDIYRGLRAGAKGYLLKGAEPNE 117

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    + I      ++                      EL+ RE+E L  I++
Sbjct: 118 LLDAIRTVHKGQKYIPPTIAAKLA---------------ERMSSEELSDRELEVLRLIAK 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK + +I+ +L I+ +TV  +  +I  K     R+ A+  A+   IV
Sbjct: 163 GKNNQQISNVLNIAESTVRFHTNNIFGKLNVSDRTQALVTALNRGIV 209


>gi|307944438|ref|ZP_07659778.1| oxygen regulatory protein NreC [Roseibium sp. TrichSKD4]
 gi|307772187|gb|EFO31408.1| oxygen regulatory protein NreC [Roseibium sp. TrichSKD4]
          Length = 216

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 66/241 (27%), Gaps = 32/241 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + IVL  + E     +    +R D L  +   +                G     LV 
Sbjct: 5   QPITIVLADDHELVRDGIRARISRVDALEVIGEANN---------------GKDALDLVA 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   +D  +      +    +             +   L   ++            
Sbjct: 50  TLRPKVILMDVSMPQMNGLEAATIIHNQ--------YPKTRVLILSIYDNPEYVRGVVQA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +   G          +   A                 + 
Sbjct: 102 GAKGYILKDISAEEMITAIKSVANGGYYFSSAIGPTLVGAAK---------SAPVDDPYG 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I++G+ + E+A  LGIS  TV ++  ++  K   K  +     A    +
Sbjct: 153 LTEREKEVLAAIAKGQPNKEVAANLGISVRTVESHRLNLREKVGCKNAAQLYKVAQELGL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 218

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 74/238 (31%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       ++ L      L  +           ++  L               
Sbjct: 2   IRIMIVDDQSLIRDGLAMLLNLRQELEVVGTATDGDEVIQKVKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +  R +                 L    F              
Sbjct: 47  HPEIILMDIRMPRMNGVEGTRLVREQ--------FPHIKVLMLTTFSDSELIFEALEQGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   I   ++ +   G ++ +D      ++   +            +  +LT
Sbjct: 99  SGYLLKDMETDAIAQAILTVHSGGAVLPQDITA--QIIKELKKTKVAVECTTPEQLAQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            REV+ L  I  G  + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 157 EREVDILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 214


>gi|291486493|dbj|BAI87568.1| hypothetical protein BSNT_05953 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 218

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 21/233 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+ R +     P   +    +I     ++ +          G     L +        +D
Sbjct: 4   DKIRVALADDQPLVREGFRYVINAQPDMTVSGEAG-----DGHDIIALAKQTKPDVILMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  + +           L     +    F T              Y     
Sbjct: 59  VQMPHCSGIEAAKDIMS--------ALPDTKIVILTTFDTEEYVFEGIRAGAVGYLLKDT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVEC 193
               +   +            + ++     A   +  F++      ++     T RE+E 
Sbjct: 111 LPEELIDAIRAAARG------EAIFRTVTAAKIISETFRAKQQPHAEELAEPFTKRELEV 164

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G  +++IA  L +S +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 165 LQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 212

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 65/222 (29%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L    +       + E   G                +D  +      
Sbjct: 7   VLIVDDHPVVRDGLRGMFASAPGFAVVGEASNGVEAVERAAVLDPDVILMDLRMPGGGGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +  +          R   L    + T  + +         Y         +   +
Sbjct: 67  DAIRELTRAR--------ARAKVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDELFTAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++           A+   +  ++      +   L+ RE E L  +++G ++ 
Sbjct: 119 RAAAQGRTVLSPAV-------ASRLVSAVRAPGAPGNE--TLSAREREVLALVAKGTSNR 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 170 EIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 211


>gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 230

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 73/230 (31%), Gaps = 16/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + V   P      + ++     +             GA    L+         +D 
Sbjct: 13  PIRVAVVDDQPLIRAGFSMVLAAAEDIEVVGEAEN-----GAEALDLLDRVEADVVIMDI 67

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +   E        + P  L    F    +           +      
Sbjct: 68  RMPVMDGIRATEELMRRE--------KPPGVLVLTTFDNDEDAFAALRAGAGGFLLKNAP 119

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   + ++     ++         LL    A+     +    +   LT RE + L+ 
Sbjct: 120 AAEVVGAIRVVAAGESVVAPRITR---LLLDQVADRLAPANGQSERLNVLTARERDVLSQ 176

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ E+A  L ++  TV  ++ ++M K   + R+ A+A+A  + +V
Sbjct: 177 VARGLSNAEVAAELYVAEATVKTHLGNLMAKLHLRDRAQAVAFAYESGLV 226


>gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11]
          Length = 221

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 24/244 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + I+L  +DE     +     +   L  +   +                G +   
Sbjct: 1   MASTALKILLVEDDELFRLGLHVRLQQEPGLEIIAETED---------------GETAVE 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LV+        LD  +      +  R +   +      VL   +     +   L      
Sbjct: 46  LVKEYSLDIVLLDVGLPGIGGIETCRQI--KQLHPQLPVLVLTSHSQASLIARL------ 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A     YC       ++ + L  +             EI     + +    +       
Sbjct: 98  IAAGAQGYCLKGIAAEKLVLALRSVAAGASWWDETATQEIRSKFEFNSTEDYTKKASI-T 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L+ I++GKT+ EIA  L I+  TV  ++ +I+ K   + R+ A+  A++
Sbjct: 157 VNPLTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 AGLI 220


>gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 15/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +     +  L E   G     L          +D I+      
Sbjct: 7   LIIADDHALVRQGIRVFLELQPDLVVLEEASSGEEAVRLAGELAPDVVLMDLIMPGIGGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +          V  R   +    +H               Y         +   +
Sbjct: 67  EATRQVKQ--------VSPRSQVIVLTSYHEDEYIFPALRAGALSYVLKDVGPEELADTV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +         +  +         +L+ RE++ L  I++G ++ 
Sbjct: 119 RKAARGESVLHPRVAARV------VEELRGNRRDAPNPFTQLSDRELDVLRLIADGCSNS 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L IS  TV  ++++I+ K     R+ A  +A +  +
Sbjct: 173 EIAQKLIISEKTVKGHVSNILGKLHMVDRTQAAVFAWQQGL 213


>gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 228

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 65/229 (28%), Gaps = 8/229 (3%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSI 77
            T     +    D            S    M  + E   G                +D  
Sbjct: 1   MTDRPIRVLVCDDQELVRTGYATIFSAQPDMEVVGESANGLEAVETATRIRPDVVVMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +A    D        P  L    F+             + +       
Sbjct: 61  MPLLDGIQATRRLA--GPDVADP----PKVLVVTTFNVDAYVYDAFRAGASGFLLKDAPP 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           A +  G+  +     ++       + G  A        +          LT RE+E    
Sbjct: 115 AEMVNGVRTVARGESLLAPAVTRTLIGRFAERLRPGDPARAAREAVTRTLTPRELEVFEL 174

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+EG ++ EIA  L I+  TV  Y++ I+ K   + R  A+  A R  +
Sbjct: 175 IAEGLSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYRIGL 223


>gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 723

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 60/233 (25%), Gaps = 18/233 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R            P     +  ++           +       G                
Sbjct: 501 RTGPVTVLIADDQPLVRQGIGLIVRAAPEFRVVGEV-----DDGEQAVAAAHRLRPDVVL 555

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +           +           L     L    F      +       + +   
Sbjct: 556 MDIRMPVLDGVAATERLTAE--------LPGCRVLALSTFDMDEHVVRALRAGASGFLPK 607

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   L  +     ++    L  +  +  + A           +   LT RE E 
Sbjct: 608 DVSPEELTAALRTVSAGDAVVAPRLLTRL--IGTFVA---PQRTTEEVRLDGLTPRETEV 662

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+ G  +  IA  LGI   TV N+I S+  K   + R+ A+  A  + +V
Sbjct: 663 LRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 715


>gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 217

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 78/241 (32%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +VL  + +     +  L       +                      G     L+
Sbjct: 1   MEKIRMVLIDDHKLFRDGMKKLLEMEPDFSLEGEASD---------------GIEGLALI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  + +     L+R +  +E        Q    +    F+   +     +
Sbjct: 46  KRSRPDVVLLDIGMPNLDGIGLIRELRSTE--------QNTKFVAITAFNDERKLSELSS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   +     +   +  +      +           A      F           
Sbjct: 98  VGVHGFVLKSSGRTELLSAIRSVARGQCYVDPKV-------AGLLLGAFHKKQDEADMLC 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W+++G ++ EI+  + +S  TV N+++ I++K   + R+ A   A R  
Sbjct: 151 DLTDREKEVLFWLAQGLSNLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVG 210

Query: 245 I 245
           I
Sbjct: 211 I 211


>gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 239

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + +     +       D +  +           R   L              
Sbjct: 30  PIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEAADGEEGIARAAELG------------- 76

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +R +     +           L    F      +      
Sbjct: 77  --PDVILMDVKMPGTDGVEALRTLRSLGNE--------ARVLIVTSFTEQRTVVPALRAG 126

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +   +  +     ++  +    +           +       +   L
Sbjct: 127 AAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVARTLL--------AQEEQAPQPSRGGSL 178

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+  
Sbjct: 179 TEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 237


>gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of
           two-component regulatory systems; Method: conceptual
           translation supplied by author [Staphylococcus carnosus]
          Length = 185

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 9/192 (4%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G   +  V         +D  +    P      +A S+  + +   +        ++ 
Sbjct: 1   ADGVEAYQKVMQHQPDVLIMDLSM----PPGESGLIATSKIVESFPDTKIL---ILTMYD 53

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                          Y        ++   +  ++     I       +  +  +  N  +
Sbjct: 54  DEEYLFHVLRNGAKGYILKNAPDEQLISAVRTVYRGDTYIDPKMTTSL--VNEFVNNTGQ 111

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +        L+ RE+E L  I++G  + EIA  L +S  TV  +   IM+K   K++ 
Sbjct: 112 DANSTNDPFRILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKP 171

Query: 235 GAIAYAVRNNIV 246
             + YA++  ++
Sbjct: 172 ELVEYALKKKLL 183


>gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 500

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       + L R++ +D        +  L +             G     
Sbjct: 268 EEGMLVTCTIPRQTEIKNGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAID 327

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 328 LCGRLQPHVILMDLDMQHMDGIEATKKIKQQ-----WPHIRVLIFTT---FQDTEQAVES 379

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 380 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEKKETPQSKAT 435

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+ 
Sbjct: 436 AYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVSNKEEAVQKALE 495

Query: 243 NNIV 246
             I+
Sbjct: 496 IGII 499


>gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 247

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 77/240 (32%), Gaps = 31/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D      +    +       +   +                G +        
Sbjct: 38  MRILIVEDDPLMQLGLEQALSEHPNFEIIGQAED---------------GYTGVQQALEL 82

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +   E + +         +         E +   +   
Sbjct: 83  KPDLVVMDIGLPRLDGIAATKQIKEQEPNIH--------VVMLTSHTLQTEVVAALSSGA 134

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + YC     + R+   +         +          +A    +  KS +    ++  L 
Sbjct: 135 DAYCIKGASLERLLAAIEAAQDGATYLDP-------QIARLVLDNLKSPNPEPNQNIALL 187

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 188 SERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 247


>gi|258624459|ref|ZP_05719406.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|258583306|gb|EEW08108.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
          Length = 216

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 6   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +           +     L   +       +         Y    
Sbjct: 61  DVSMPIMNGIEATRLIKEE--------VPNTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 113 ISALKMVQAIKTVNQGATYFCESTTSTL---------FSQEILPTATKPNPLSRREEAIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 164 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 215


>gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 211

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 71/240 (29%), Gaps = 31/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +  + +    +  +   +                G          
Sbjct: 1   MRVLIVEDDPMMQLGLEQVLSDWADIDLIGIAED---------------GYLGVETALNQ 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +           L     +         E I   +   
Sbjct: 46  KPDLILMDIGLPRMDGIEATQKIKE--------ALPEIRVVMLTSHTAETEVIAALSSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFEL 186
           + YC     V R+R  +         +           A    N  +        K   L
Sbjct: 98  DAYCIKGASVDRLRAAITAASEGATYLDPQV-------AKCVINHLQPPTPQSDLKSTNL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  + EGKT+ +IA  L +S NT+  ++  IM K +   R  A   A+R  +V
Sbjct: 151 SPREFEVLKLMVEGKTNVKIAEELYLSPNTIKTHVRGIMNKLSVDDRVQAAVTALRLGLV 210


>gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis
           biovar Abortus 2308]
 gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445]
 gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5
           str. 513]
 gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3
           str. 686]
 gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M163/99/10]
 gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis B2/94]
 gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M644/93/1]
 gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M13/05/1]
 gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 4 str. 292]
 gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae
           5K33]
 gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti
           M490/95/1]
 gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti
           B1/94]
 gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 9 str. C68]
 gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99]
 gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella suis 1330]
 gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella abortus bv. 1 str. 9-941]
 gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding
           domain [Brucella melitensis biovar Abortus 2308]
 gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445]
          Length = 235

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 10  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 69

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 70  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 129

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 130 RSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 189

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 190 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|311899923|dbj|BAJ32331.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 243

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +    E   G     L R        +D  +     
Sbjct: 7   RVLIADDQALLRAGFRLLIDSAPDLAVAGEADNGERAVELARRLRPDVVLMDVRMPGTDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F           G  + +       A +   
Sbjct: 67  LEATRRIRA------DPAAAGTRVLVLTTFDLDEYVYAALCGGASGFLLKDILPADLLTA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L ++     ++       +       A   +       +   LT RE E L  ++ G  +
Sbjct: 121 LRVVAAGDALLAPAVTRRLI---GEFAGRHEPPPRLARELAGLTPREREVLRLVARGLPN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +A  L +S  TV  ++  ++ K     R+  +  A    +V
Sbjct: 178 PAVADHLELSVATVKTHVRRLLAKLHAHDRAQLVVIAYETGLV 220


>gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
 gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea
           ATCC 14685]
          Length = 218

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 68/237 (28%), Gaps = 28/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G S   ++   
Sbjct: 3   IKIILIDDHTLFRSGIKALLLRQHDFEVIGEASD---------------GLSGIKMISQL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECIRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +        +   +   ++                       LT
Sbjct: 100 RGYLLKNINADFLLESIRKAADGDNVFSPEMTAKLVRSLI-----SPQPAQGTQTLSSLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+ +N
Sbjct: 155 PREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHN 211


>gi|322383770|ref|ZP_08057521.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151982|gb|EFX44925.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 213

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 27/236 (11%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  + +     +         L          +    +  + E            +  Q
Sbjct: 1   MIVDDHDMVRMGLKTYIMLDPELEVCAEASDGKAAVALLEQMAE-----------EERPQ 49

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D ++ +    +  R +  +     Y  ++         F    + +         Y
Sbjct: 50  VILMDLMMPNMNGIETTRLVTET-----YPSIKVVM---LTSFLEEDKVLKAIEAGATSY 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T    ++  G+         +  +         +               +  LT RE
Sbjct: 102 VLKTVSSEQLIEGIHKASQGIPEMNPEV--------SLALTRGLRQRNAQPDEEGLTIRE 153

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I++GKT+ +IA  L IS  TV  ++++++ K     R+    YA R   V
Sbjct: 154 KEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 209


>gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces himastatinicus ATCC 53653]
          Length = 214

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 70/222 (31%), Gaps = 9/222 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   + +     +  T  + A+ E   GA    L          +D  +   
Sbjct: 1   MTTVLIADDQPLQRLGFGMLLQGTPGLTAVGEAEHGAEAVRLAAELRPDVVLMDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         I 
Sbjct: 61  DGLEATRRIVATGG--------RTRVLIVTTFDLDAYAYEGLRAGASGFLLKDARPEEIV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     ++       +    A+Q            +   L+ RE E L  I +G 
Sbjct: 113 AGIHAVATGDAVVAPRLTRRLLDAYAHQVLAPPGTPAEDPRLHTLSDREREVLVAIGQGW 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T+ EIA  L ++ +TV  ++  ++ K   + R  A+   VR+
Sbjct: 173 TNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMGVRH 214


>gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 207

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 65/240 (27%), Gaps = 36/240 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ +++  + E     +       D +  +                    G     L R
Sbjct: 3   EKIRLLVVDDHEMVRMGLITFLQLEDDIEVVGEASN---------------GKEAITLAR 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++      D  R +   +                  +            
Sbjct: 48  ELSPDVILMDLLMDEMNGIDATRELTNDDVKII----------VLTSYLDDEMLFPVMEA 97

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T     I   +                 +                   K  E
Sbjct: 98  GAFSYILKTSSANEIVEAIRKAHKG-----------VPTFQGQVTQKMFHQMRSKPKHEE 146

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I +GKT+ +IA  L I   TV  +++ I+ K   + R+ A  YA +N +
Sbjct: 147 LTNREREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAAIYANKNKL 206


>gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 238

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 15/233 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDL 86
            +S L A +        +   +  ++   G SH  L+     ++  L  ++  S  P   
Sbjct: 6   RQSLLSAELSTARTRSLFAQALGRISTAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAY 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLT 134
           VR    +   +      R      P    L               +     +       T
Sbjct: 66  VRDFDRAHMMRGCPFGVRLRASAVPPAWHLNDASNGQAFPAELRALMLRHAIPAGVAMPT 125

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVEC 193
                 R+       +   + +  + E+ ++  +  + + +           L+ RE+E 
Sbjct: 126 TAADGQRLVFWFCG-ERAALGQSEINELVMIILHALDAYNAVKRNEECAHNALSNRELEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 185 VRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 237


>gi|59712516|ref|YP_205292.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
 gi|59480617|gb|AAW86404.1| DNA-binding response regulator in two-component regulatory system
           with NarQ [Vibrio fischeri ES114]
          Length = 203

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 34/228 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+V+  +       +  L +  +                         G     L+  D 
Sbjct: 3   NVVIVDDHPLMRRGIGQLLSFDEEFTLTGEASN---------------GTDAVALISQDE 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +          ++         V     +  T      +
Sbjct: 48  PDLVLLDLNMKGMSGLDTLHALRNEGVT--CPIV------ILTVSDNKQDIKTLIKAGAD 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L      G+                     +       K  +LT 
Sbjct: 100 GYLLKDSEPDELIALLKEAMKGGKAYSE-----------QVKTCLEEDAQGDDKLSQLTA 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           RE+E L  +++G  + ++A  L IS  TV  ++ S+++K   K+R  A
Sbjct: 149 RELEILQHVAKGMRNKQVADKLFISEATVKVHMKSLLKKLNVKSRVAA 196


>gi|289522810|ref|ZP_06439664.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503834|gb|EFD24998.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 222

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 73/244 (29%), Gaps = 28/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
               ++ ++L  + +     +S L ++ + ++ +                    G     
Sbjct: 1   MASDEIKVLLVDDHKIFLDGLSELLSKEEAISVVGKASS---------------GREALK 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LV         +D  +      D  + +     +           +   +          
Sbjct: 46  LVPRYNPDIVVMDITMPDMNGIDATKMLTQRHPN--------VKIIALSMHLDRGMISQI 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y      +     G+  +      +         +L  Y              
Sbjct: 98  LEAGARGYILKDCSIDEFVQGIKAVSQDLVYLTPKAAK--IVLEDYL---LLKRGDVLAA 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE+E L  + +G+ +  IA  L IS++TV+ +  +IM K      +    YA+R
Sbjct: 153 ENKLSPREMEVLRLLVKGEHTKSIASKLSISKSTVDTHRKNIMEKLNCANIADLTRYAIR 212

Query: 243 NNIV 246
             +V
Sbjct: 213 EGLV 216


>gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048]
 gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048]
          Length = 215

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 4/177 (2%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E   D ++      DL   MA           +         F      +         Y
Sbjct: 41  ETAPDMVIMDIQMPDLSGIMATKNIMSILPNTKVVL---LTTFDVQQYVLDGIRAGAVGY 97

Query: 131 CSLTFDVARIRIGLMLLFPKG-RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                +   +   +  +                     Y  N +            LT R
Sbjct: 98  ILKDTETEEMLDSIRSMNRGAMIYNSTTANQAFTQFIKYDNNDYNLAGEELEYTETLTKR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L  ++ GK + EIA IL +S  TV  +I +I++K     R+ A   A+R  IV
Sbjct: 158 EIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIRKKIV 214


>gi|218247165|ref|YP_002372536.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257060237|ref|YP_003138125.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167643|gb|ACK66380.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256590403|gb|ACV01290.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 226

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 23/245 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + L  +DE   + +       D +  +                    G    LL+
Sbjct: 1   MSKIQVALIGDDEFTRTNLRRKLQYHDEIIWIGEAS---------------QGQEGLLLL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L +     +  +      +   +     +   + +    
Sbjct: 46  YEKKPDVAIVDLDLGEFDGIELTKQFKSDQDKRT-----QTKIIILTANNQKHQVLGAFR 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--- 181
              + YC     +  +   +   +     I       I   A    +             
Sbjct: 101 AGADSYCLKNIKIELLIEAVKTTYQGNTWIDPVIAPIILSQAKANLSHSCQSSSLTENFL 160

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE+E L  I +G ++ +I+  L I+  TV  ++ +I+ K     R+ A   A+
Sbjct: 161 KHTPLTERELEVLQLIVDGYSNAQISEQLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 220

Query: 242 RNNIV 246
           R+ +V
Sbjct: 221 RSGLV 225


>gi|167766736|ref|ZP_02438789.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1]
 gi|167711490|gb|EDS22069.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1]
          Length = 222

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 72/237 (30%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +P   + +               +                 D
Sbjct: 2   IKVMIADDQELIRQSLQIVPEMKEGIEVTATAKDGREVIQEVRK---------------D 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +        Y  ++    +    F              
Sbjct: 47  KPDVILMDVRMPEMDGVQCTQIIKEQ-----YPDVKI---IILTTFDDDEYVYNALKHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +   G +I  +   ++    +  A       +H     E+T
Sbjct: 99  SGYLLKGISMDELEKAINTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E E +  +  G ++ EI+  L +S  TV NY+++I+ K   + R+    + V++ 
Sbjct: 159 DAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQSG 215


>gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 12/225 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V     M  + E   GA    +VR        +D  +      
Sbjct: 5   VLLADDQTLLRSAFRVLVDSEPDMEVVGEASDGAEAVEIVRAKGADVVLMDIRMPGTDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +           L     +    F      +       + +     +   +   +
Sbjct: 65  AATRMITE------DPRLADVRVVMLTTFEVDEYVVDSLRAGASGFLGKGAEPGELLSAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---GKDFELTGREVECLTWISEGK 201
            +      ++        GL+A + A              +   LTGRE E L  ++ G 
Sbjct: 119 RIAAAGEALLSPVATK--GLIARFLAQGVPGSGDAAYDASRLDALTGREREVLVQVAGGH 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 177 PNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGLV 221


>gi|15599074|ref|NP_252568.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAO1]
 gi|107103394|ref|ZP_01367312.1| hypothetical protein PaerPA_01004464 [Pseudomonas aeruginosa PACS2]
 gi|116051915|ref|YP_789242.1| transcriptional regulator NarL [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889841|ref|YP_002438705.1| transcriptional regulator NarL [Pseudomonas aeruginosa LESB58]
 gi|254236778|ref|ZP_04930101.1| two-component response regulator NarL [Pseudomonas aeruginosa
           C3719]
 gi|254242570|ref|ZP_04935892.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192]
 gi|296387604|ref|ZP_06877079.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAb1]
 gi|313109299|ref|ZP_07795267.1| two-component response regulator NarL [Pseudomonas aeruginosa
           39016]
 gi|9950059|gb|AAG07266.1|AE004805_4 two-component response regulator NarL [Pseudomonas aeruginosa PAO1]
 gi|115587136|gb|ABJ13151.1| putative nitrate/nitrite response regulator; NarL [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168709|gb|EAZ54220.1| two-component response regulator NarL [Pseudomonas aeruginosa
           C3719]
 gi|126195948|gb|EAZ60011.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192]
 gi|218770064|emb|CAW25826.1| two-component response regulator NarL [Pseudomonas aeruginosa
           LESB58]
 gi|310881769|gb|EFQ40363.1| two-component response regulator NarL [Pseudomonas aeruginosa
           39016]
          Length = 219

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 72/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + V ++L  +       V+ L    D L+ +                    G     L  
Sbjct: 10  EPVRLLLVDDHPMMRKGVAQLLELEDDLSVVGEAGS---------------GEEALRLAA 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D +R +  +  D           +   V     + +     
Sbjct: 55  ELDPDMILLDLNMKGMNGLDTLRALREAGVD--------ARIVVFTVSDDKGDVVNVLRA 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +  R+   +         +       +              D       E
Sbjct: 107 GADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILA--------QALRGDDRSKSLDE 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G ++  IA  L I+  TV  ++  ++ K   ++R  A  +AV N++
Sbjct: 159 LTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAVWAVENDL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240013]
          Length = 218

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 28/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECIRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +        +   +   ++                       LT
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLI-----SPQSTQGTQALSSLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 155 PRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|223935483|ref|ZP_03627400.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895893|gb|EEF62337.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 233

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 67/228 (29%), Gaps = 26/228 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQE 71
           +  +   S    R+  ++           L E             G     ++       
Sbjct: 7   IPQVQPSSRAPLRVALVEDQKEIRENWTRLIESFSDFKCVCTCSTGEEALRVIPSVRPDV 66

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +       S        L +   +                   + Y 
Sbjct: 67  ILMDIFLPRMSGIECTARFKES--------LPKTQIIILTAVDDDEMVFLALEAGADGYL 118

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +R  L+ +   G  +  +       +A      F+    +      L+ RE 
Sbjct: 119 LKRTKPTDLRAALLDVLSGGAPMTSE-------IARRVVESFRRVSRNRQDTIRLSAREE 171

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E L  +S+G ++ EIA  + +S  TV +++  I  K   ++R+ A+A 
Sbjct: 172 EVLVMLSKGYSNKEIADKIDLSVETVRSHLKHIYEKMHVRSRTEAVAR 219


>gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis Bt4]
          Length = 194

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 12/191 (6%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PEN 119
            F       ++ S++P         +      + ++       PV  +            
Sbjct: 4   PFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSASTNASKSAFWA 63

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSY 176
                G+ + + S +         L L   +  I   ++      +  LA         +
Sbjct: 64  EALSFGIAHGWSSASRGADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPF 123

Query: 177 DVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                + D +LT RE + L W ++GKT+ EIA+IL IS +TVN ++ +I+ K  +  +  
Sbjct: 124 LPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQ 183

Query: 236 AIAYAVRNNIV 246
           A+A A    ++
Sbjct: 184 AVAKAALMGML 194


>gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
 gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus
           indolifex HEL-45]
          Length = 239

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 78/236 (33%), Gaps = 15/236 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +   SD    +      +  +  +  L + +G ++   + +        D ++ + +   
Sbjct: 2   VTPLSDRYLDLKEQQPDLKTSEILNVLAQDMGLNNLSYLGFHKDPCGGSDPVIHTTYDPA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMD-NRYCSLT 134
            +             V+    E   PV                      G+  N      
Sbjct: 62  WLARYQEENYHLIDPVVDSALEGTLPVDWSELPKVDRVTRDFFGEAMEFGVRQNGVSIPI 121

Query: 135 FDVARIRIGLML----LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            D    +  L L       + R   R  + +   L     +   +          L+ RE
Sbjct: 122 RDHVHGKAVLTLNSDLRIHEWRKYKRGIIADAIYLGCLLQSDLVAGIAGGEPGPRLSRRE 181

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L W + GKT+ E A I+ +S +TVN+++ +   K     ++ A+A A+R  ++
Sbjct: 182 KEVLKWAAVGKTAWETAQIMTVSNSTVNHHLYNACAKLDVANKTHAVAKAIRAQLI 237


>gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
 gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella microti CCM 4915]
          Length = 235

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 10  MQSADSADQLFEIIKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 69

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 70  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 129

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 130 RSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 189

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 190 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 212

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 63/233 (27%), Gaps = 29/233 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L         +   D   +   ++  L               
Sbjct: 2   IKILLVDDQSLVRRGLKALLQFEADFEVIGEADNGETAIAQLETL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +                 L    F              
Sbjct: 47  QPDIILMDVRMPVMDGVAATRQIHQR--------FPHIKLLVLTTFDDDEYITQALHYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +      +      +   +         +    W    ELT
Sbjct: 99  SGYLLKDTPPDELAQAIRAVHKGYTQLGPGIGQK---IMTQIPASVSNSSTAWD---ELT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  I+ G  + EIA  L IS+ TV N+I +I+ +   + R+ A  +A
Sbjct: 153 PREQEILRLIATGANNREIAQTLYISQKTVKNHITNILSRLNLRDRTQAAIWA 205


>gi|311106149|ref|YP_003979002.1| transcriptional regulator DegU [Achromobacter xylosoxidans A8]
 gi|310760838|gb|ADP16287.1| transcriptional regulatory protein DegU [Achromobacter xylosoxidans
           A8]
          Length = 223

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 25/241 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +     S V  L  R      +      V    R   L              
Sbjct: 2   PIRILLVDDHTLFRSGVRLLLQRQPDFEVVAEAGDGVEGLKRAKEL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      + ++ +           L     +   V     E        
Sbjct: 48  -KPDVVLLDLNLPGLSGLETLQLLTQE--------LPACAVIILTVSEEADELGQALRDG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--F 184
              Y     D   +   +        +I      ++      QA++        G     
Sbjct: 99  ARGYLVKNIDADALTAAIRRAAGGEPVIAESMTAKLVEQFRGQASLAAQAPQAAGSAERH 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + + W++ G ++  IA  L +S +TV  ++ ++++K    +R     YAV + 
Sbjct: 159 RLTARETQIVQWLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYAVEHG 218

Query: 245 I 245
           +
Sbjct: 219 L 219


>gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +D      +       +    +  +D                G         
Sbjct: 16  PMKILIVEDDPLMQLGLEQALGAHERFEIIGRVDN---------------GYGAVQQAAV 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  + +  +    +   +   T    P      E I   +  
Sbjct: 61  LNPDLIVMDIGLPGLDGIEATKQIKQTSPQIH---IVVLTSHTLP-----NEIIAALSSG 112

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + YC     + R+ + +         +       +        N+             L
Sbjct: 113 ADAYCVKGATLERLILAIAAAQDGATYLDPQIARVV------VENLKPPVPEGQADVSSL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ L  I EGK++ EIA  L +S NT+  ++  IM K +   R  A   A+R+ +V
Sbjct: 167 SEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226


>gi|330468534|ref|YP_004406277.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811505|gb|AEB45677.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 229

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R       P        ++  +  +             GA    L R  L     +D
Sbjct: 10  RPVRILLADDQPLLRTGFRMVLGAEPDLDIVAEAGD-----GAEAVELSRRLLPDVVLMD 64

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         R +  +              L    F      +       + + S   
Sbjct: 65  IRMPRMDGVSATRAIVDARLP--------VRVLILTTFELDEYVVGGLRAGASGFLSKDV 116

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++    L  +  L  +   +             LT RE E L 
Sbjct: 117 PAEDLITAIRTVAAGDAVVAPRILRRL--LDRFADVLPDPAASPPKALSTLTDREREVLG 174

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA  L +S  T+  ++ +++ K   + R  A+  A  + +V
Sbjct: 175 QVARGLSNAEIARALSVSETTIKTHVGNVLTKLGLRDRVQAVVLAYESGLV 225


>gi|308176141|ref|YP_003915547.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743604|emb|CBT74576.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 224

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 74/242 (30%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  ++      +  +   +  +A +  ++                G +     
Sbjct: 1   MEKIKVLIVDDEPLIRHALGTILATAHGIAMVNSVEN---------------GQAAVDYC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + +      +D  +         + +      +    +     L    F +    +    
Sbjct: 46  KDNHVDVVLMDLQMPIMDGVSATKIIKS---VQDSPSV-----LAITAFSSDEYLVPVLT 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   I   +  +      I      ++                    D 
Sbjct: 98  AGASGYLVKDSEPDEIIRAIHAVHQGTAAISPSVSSDLVSAVREAYRDNSGDIQELVYDL 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE E L  +++G  + EI+  L IS  TV  ++A I  K   + R  A+  A R  
Sbjct: 158 GITNREFEILKLLAKGLNNPEISKTLAISETTVKTHMAKIFVKLDVRDRVQALVAATRMG 217

Query: 245 IV 246
           ++
Sbjct: 218 LI 219


>gi|319893351|ref|YP_004150226.1| Two-component response regulator [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163047|gb|ADV06590.1| Two-component response regulator [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463599|gb|ADX75752.1| two-component response regulator NreC [Staphylococcus
           pseudintermedius ED99]
          Length = 216

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +++   M  + T   G   +  V         +D  +    P
Sbjct: 2   RIVIADDHAVVRTGFSMILNFQEDMEVVGTAADGVEAYQKVMEHAPDVLIMDLSM----P 57

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A S+    +   +        ++              + Y        ++ + 
Sbjct: 58  PGESGLIATSKILDSFPNTKIL---ILTMYDDEEYLFHVLRSGASGYILKNAPDEQLLLA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     I       +     + +N     +        L+ RE+E L  I++G  +
Sbjct: 115 IRTVYQGETYIDPKMTTSLVKEFVHSSN---DGEYSNDPFKVLSKRELEILPLIAKGYGN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 172 KDIAEKLFVSVKTVEAHKTRIMDKLNLKSKPELVEYALKKKLL 214


>gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
 gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM
           20098]
          Length = 226

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 74/248 (29%), Gaps = 24/248 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   Q++ I +  + E   + V            +  L        +   +        
Sbjct: 1   MSEPEQRIRIAIVDDHEMFRAGV------------IATLQPHFDVVGQAADV-----EGS 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             ++         LD  V           +A S       V    +    P      +  
Sbjct: 44  VAMIAQTKPDVVLLDVHVPGGEGGGGTEILAKSRLYSPDTVFLALSVSDSP-----QDVG 98

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-- 178
           +        Y + T   + +   +  +     +        +       ++   S     
Sbjct: 99  SVIRAGAQGYVTKTISGSDLISSIKQVHEGYAVFSPKLAGFVLSAFQNGSSTNSSIGGSI 158

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    
Sbjct: 159 HDDELDRLSNREQEVMRLIARGYTYKEVAAELFISVKTVETHVSSVLRKLQLSNRTELTR 218

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 219 WAADRRIV 226


>gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 229

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 10/225 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V     M+ + E   GA    L R        +D  +      
Sbjct: 6   VLLADDQALLRSAFRVLVDSESDMHVVGEAADGAEAVTLARSTRADVVLMDIRMPGTDGL 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R ++          L     +    F      +       + +     +   +   +
Sbjct: 66  TATRMISA------DPDLAGVRIVMLTTFEVDEYVVQSLRAGASGFLGKGAEPEELLNAI 119

Query: 145 MLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            +      ++       +    L     A        +  +   LTGRE E L  ++ G 
Sbjct: 120 RVAAAGEALLSPVATKGLIASFLAQGGSAGEGADAAEYAERLAALTGREREVLVQVAGGH 179

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++D+IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 180 SNDQIADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 224


>gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 247

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 17/228 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +++ ++         ++ +  LT+ +   ++LL         K D  +  ++P       
Sbjct: 11  EIINKIRLSQTNNDMSLCLQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYY 70

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDVA 138
             +   K   ++        P+  ++ E                 +G+ + +        
Sbjct: 71  DEANLIKDDPIVDYSFSHHSPINWSIFEKQKKMSNQINVIEEAKISGLYSGFSFPIHTKD 130

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVEC 193
                +     +    + +      +            +    K+      +LT RE EC
Sbjct: 131 GGFGMISFASSQKEKYIDNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKEC 190

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L W  EGK+  EI+ ILG S  TV  ++A+   K     R  +I+ A+
Sbjct: 191 LIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 238


>gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 69/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA--------------- 124
           + P D           +   V         P   +  P   T                  
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPVVRYLH 121

Query: 125 --GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
              M                 L  L   G  +  +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +      LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus
           profundus DSM 14977]
 gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 219

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            +  +    D       L   +     +  + E   G                +D  +  
Sbjct: 3   GMIRILIADDHSLFRQGLRSLLEAEGDLRVIGEAASGREALRAALETRPDIVLMDIQMPG 62

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  + +                 +   ++                Y     D   +
Sbjct: 63  LDGVEATKEILKE--------FPEAKVIMLTMYRQDAYVFEAVKAGARGYLLKDVDAEAL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +     ++  +   +I      + ++            +LT REV+ L  +++G
Sbjct: 115 VDAVRRVNEGEVLLDAELAEQIIHDFRAKRDVLPQAH-----HADLTDREVQILRLLAQG 169

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T+ EIA  LGIS  TV N ++ I  K     R+ A  YA+R  +
Sbjct: 170 ATNQEIADELGISEKTVRNRLSEIFSKLHLNNRTQAALYAIREGL 214


>gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 187

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 70/199 (35%), Gaps = 17/199 (8%)

Query: 49  MYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           M  + E   G     +          +D ++      +  + +  +         +    
Sbjct: 2   MEVVGEAENGREGADMALELRPDIILMDLVMDEMDGIEATKEIMQNW--------KEAKI 53

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    F    +         + Y   T   + I   +   +    ++  +   ++     
Sbjct: 54  IIVTSFIDDEKVYPALEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL- 112

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                  +         +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K
Sbjct: 113 -------TAKPEKNLHDDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSK 165

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A  YA ++++V
Sbjct: 166 LDVQDRTQAAIYAFKHDLV 184


>gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 229

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 62/221 (28%), Gaps = 8/221 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           +     M  + E   GA    L R        +D  +       
Sbjct: 2   LLADDQALLRATFRMLIDSCEDMTVVGEASDGAEAVDLARATRPDIVLMDIRMPGTDG-- 59

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +A +        L     L    F T            + +         +  GL 
Sbjct: 60  ----LAATSVLCADPDLSATRVLILTTFETEEYVARALHAGASGFLGKDVTTDTLLAGLR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +        +          +  ELT RE E +   +EG ++ E
Sbjct: 116 TVASGEALLSPAATRTLIANFLMSPSPGAQLASPK-RLSELTARERETMAMAAEGMSNSE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV  +I   M K   + R+  +  A +  +V
Sbjct: 175 IAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQTGLV 215


>gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 225

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  + E     +  +   +  +               +                 D
Sbjct: 2   IRVFIADDQELIRQSLQIVLGANADMEVTGTAADGRDVLRSVRK---------------D 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +                 +    F       +      
Sbjct: 47  QPDVILMDIRMPEVDGVQCTKIIKEQYPQI--------KIIVLTTFDEDDYIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +     II  +   ++  + +  A    +          L+
Sbjct: 99  SGYLLKGVSMEELSGAIRKVSAGQAIINAEVATKVVHMFSKMAQSSLTSPTAGKTLELLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E + +  +  G ++ EIA  L +S  TV NY+++I+ K   + R+    +A ++ I+
Sbjct: 159 RTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYLSTILSKLELRDRTQLAIWATQSGIL 217


>gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni CNB-2]
          Length = 274

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 74/241 (30%), Gaps = 24/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V + L  ED    + +S    R      +                         L+  
Sbjct: 58  QPVRVFLVDEDSHVRNVISQELMRDPRTLLVGQASS----YREARKNIFLQDFDVLLI-- 111

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      +L+  + L   D           +           +     
Sbjct: 112 ---------DLSLGEGQGIELLESIQLKRPD--------VLSIAISASENDDAAMNALKR 154

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y             ++ +   G  I      +I     ++AN  +           
Sbjct: 155 GAVGYLVKNSWFGSYSQAVLEVANGGAAISPVVAKKIIPK-IFKANFHEESIFKHKSFES 213

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I++GK+S E+A  L IS  TV+ +I +I  K   +TR+ A+  A+   I
Sbjct: 214 LTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILIGI 273

Query: 246 V 246
           +
Sbjct: 274 I 274


>gi|332991886|gb|AEF01941.1| two-component system regulatory protein [Alteromonas sp. SN2]
          Length = 214

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +  L    D +  +   D        + A               +
Sbjct: 3   IRVVLVEDQMLVRQGIRSLLALDDSVEVVAECDDGAYVIDALNA---------------N 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D +R M     D    V+          F              
Sbjct: 48  SADIVLMDIRMPEMTGIDALRAMRKHNIDT--PVI------MLTTFDDHELVTQAMQSGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +     +I      ++           +     + +   L+
Sbjct: 100 KGYLLKDVSLETLIDAIKSVVNGETLIQPSVTEKV----LKGLQGLEVSFESFEQPETLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+E L  ++ G ++ EI+  +  S  TV N +++IM K   + R+ A+  A+    +
Sbjct: 156 PKEIEILRLVAAGYSNKEISEAMFKSTGTVKNQVSAIMAKMGVRDRTRAVLKALELGWL 214


>gi|301059490|ref|ZP_07200403.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446385|gb|EFK10237.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 225

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I+Q+ I++  +       V  + +++     +           +   L            
Sbjct: 2   IKQLRILVVDDHPLFREGVVGMLSKTAGYQVVGQASSGEEGIEKAREL------------ 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      D  R M  +  D           +   +   +        
Sbjct: 50  ---HPGLVLMDISLPGMNGIDATRRMRSTSPDM--------KVIMLSIHTKVDFISDAFK 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +      ++   +  +      + R     +       A   K  +       
Sbjct: 99  AGAVGYMTKDATGEKLLECIGTVMKGEYYMDRSVSHIVA--KNLLAAEEKKGNARMPGYD 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +  I+EG+++ +I+  L IS+ TV N+ A+I  K    +    + +A +  
Sbjct: 157 TLTRREQEIMRLIAEGRSTKQISQQLFISQKTVENHRANIFSKLDIHSTMELVRFAAKYG 216

Query: 245 IV 246
            +
Sbjct: 217 FI 218


>gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 241

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 15/228 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     +     +  T  +  + E   G S              LD  +      
Sbjct: 5   VLLADDQPLIRLGFRMILEDTGDIEVIGEAADGRSATEQALTLRPDVVLLDIRMPGMDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  ++         +   L    F           G  + +      VA +   +
Sbjct: 65  EATRRIMAAD--------PQARILVLTTFDLDEYAFAALRGGASGFLLKDAPVAELVHAI 116

Query: 145 MLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            ++     ++       +       L      +         G    LTGRE E L  ++
Sbjct: 117 RVIAQGHALVAPRITRLLLDAYAPQLPDPLAGDRPGPDRAVVGPGGSLTGREHEVLLLLA 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G+++ EIA  L +S  TV +++ +++ K   + R  A+ YA  + ++
Sbjct: 177 RGRSNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVAAVIYAYEHGLI 224


>gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 537

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 26/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+ + +  +       +  +    + L  +   +           L             
Sbjct: 322 EQIRLCIVDDHSFIRESLHTILDGQEDLQVVGMAEDGERALELCERL------------- 368

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  + +       + +        +  ++         F            
Sbjct: 369 --KPDVVLMDLEMPNLDGVHATKMIKEK-----WPDIRVLILST---FQNTERAKEIIRN 418

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   + D   +   + L++  G +I       +      + +     D   GK++ 
Sbjct: 419 GADGYLLKSIDSRELAESIRLVYRGGTMINHGLFHRMWEENEEKGSFESRSD---GKEYG 475

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A    +
Sbjct: 476 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDKGL 535

Query: 246 V 246
           +
Sbjct: 536 L 536


>gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 79/251 (31%), Gaps = 32/251 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +VL  + +   + +     + D +  +                    G     L+
Sbjct: 1   MSAIRVVLVEDHDLTRAGMRMTLQQHDSVQVVGEAAN---------------GQDGLKLI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  +      ++ R +           ++        +       +   A
Sbjct: 46  SKEKPDIAIVDIGLPDIDGIEVTRRLKAE-----DPEVRVL---ILTLRDNDQTVLAAFA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQA--------NMFKS 175
              + YC      A +   L         I        +G + +  A        N  + 
Sbjct: 98  AGADSYCMKDIGSADLFAALQTTREGHSWIDPSIARTVLGQIGSQPAAGTSTVQINAAEP 157

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +   LT RE+E L  I EG+++ +IA  L I+  TV  ++ +I+ K     R+ 
Sbjct: 158 EFTQILEASPLTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCADDRTQ 217

Query: 236 AIAYAVRNNIV 246
           A   A+R  +V
Sbjct: 218 AAVTALRAGLV 228


>gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
 gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family
           [Nocardioidaceae bacterium Broad-1]
          Length = 222

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 80/231 (34%), Gaps = 15/231 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R + V   P     LA MI  +  +            VG +        + +    
Sbjct: 5   DQMIRVALVDDQPLVRMGLATMIGAEPDLEV----------VGEASDGSAALPMLRRTHP 54

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++       ++  + + E+      LQ    +    F              + +    
Sbjct: 55  DVVLCDIRMP-VLDGLGMLEQVTRDASLQDVRVVMLTTFELDEYVFEALRLGASGFLLKD 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   +   + ++   G ++       +      +    +       +  +LT RE E +
Sbjct: 114 AEPVALLDAIRVVADGGSLLAPTVTRRV----IEEFGSSRRAANPHPRLGDLTEREREMV 169

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            W++ G+++ EIA  L +S +TV  +++  M K   + R+  + +A+ + +
Sbjct: 170 AWVATGRSNAEIAAELVVSPDTVRTHVSRAMVKLHARDRAQLVVFAIESGL 220


>gi|172040144|ref|YP_001799858.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851448|emb|CAQ04424.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 264

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 71/250 (28%), Gaps = 32/250 (12%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D           +     +    E   GA    L          +D  + +      
Sbjct: 6   LADDQQLVRAGFAMVLDSQDDLSVAWEAADGAEACELAVALPVDMILMDVQMPTMDGIAA 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R + L+E        +    +    F +    +       + +     D   +   +  
Sbjct: 66  TRRI-LNELSPTGPAGEPTRVVVLTTFDSDNYVLGAVTAGASGFLLKDADPEELINAVRT 124

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---------------------- 184
           +     +I      ++                                            
Sbjct: 125 VGESTAVISPAATAKLIQRLRADGAAANPEGPKSTPAPGVPPQNTAAPQPAAARPATPDA 184

Query: 185 --------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E L  I++G+++ EIA  L IS  TV  ++  ++ KT ++ R  A
Sbjct: 185 EDDLGLVDPLTRREREILCLIAKGQSNQEIAEKLFISLPTVKTHVGRVLMKTGSRDRVHA 244

Query: 237 IAYAVRNNIV 246
           + +A+++++V
Sbjct: 245 VLFALKHHLV 254


>gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119]
 gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 209

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGSSGKEAIEKAHTL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D +++     +    +           L     +    F    E         
Sbjct: 48  NPDLILMDLLMNDMDGVEATTQIKKD--------LPHIKVVMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIAEAVRKTYRGESVFEPEVLVKM-------RNRMKKKAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|317405306|gb|EFV85631.1| nitrate/nitrite response regulator protein [Achromobacter
           xylosoxidans C54]
          Length = 223

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 23/239 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +     S +  L  R      +      V    R   L              
Sbjct: 2   PIRILLVDDHTLFRSGMRLLLQRQPDFEIVAEAGDGVEGLKRAKEL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      + ++ +           L     +   V     E        
Sbjct: 48  -KPDVVLLDLNMPGLSGLETLQLLTQD--------LPSCAVIILTVSEEADELGQALRDG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +   +        +I      ++      QA++         +   L
Sbjct: 99  ARGYLLKNIDAEALTSAIRRAAAGEPVIAESMTAKLVEQFRGQASLAAQAPAGQAERHRL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE + +  ++ G ++  IA  L +S +TV  ++ ++++K    +R     YAV + +
Sbjct: 159 TARERQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 217


>gi|260425367|ref|ZP_05779347.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp.
           SE45]
 gi|260423307|gb|EEX16557.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp.
           SE45]
          Length = 242

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 21/238 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +P     L ++   +          AL +     H +        EQ         +   
Sbjct: 7   IPVTGGFLEQLELAERREDLQSVAEALRDRFKVDHLVYHWVSANGEQYG----CGTYDPV 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAG-MDNRYCSLT 134
            V         +   V+Q   + F PV               +      G  +  Y    
Sbjct: 63  WVERYLEKGYLRIDPVIQGCFQRFHPVDWKRLDWSSKAARAFQWDAIAHGVGNQGYSIPI 122

Query: 135 FDVARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSY--DVHWGKDFELTG 188
                      +          +       ++ L+A Y                   L+ 
Sbjct: 123 RGPNGQFALFTVNHSCDDEAWAEFTALNRRDMILIAHYFNQKALELEPGRRPEPAQPLSP 182

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E +T I+ G +  ++A  L IS +T+  YI S   K      + A+A A+   ++
Sbjct: 183 REIEAMTLIAVGYSRAQVAETLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLI 240


>gi|152984552|ref|YP_001346614.1| transcriptional regulator NarL [Pseudomonas aeruginosa PA7]
 gi|150959710|gb|ABR81735.1| two-component response regulator NarL [Pseudomonas aeruginosa PA7]
          Length = 219

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 72/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + V ++L  +       V+ L    D L+ +              AL             
Sbjct: 10  EPVRLLLVDDHPMMRKGVAQLLELEDDLSVVGEAGSGEEALRLAAAL------------- 56

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D +R +  +  D           +   V     + +     
Sbjct: 57  --DPDMILLDLNMKGMNGLDTLRALREAGVD--------ARIVVFTVSDDKGDVVNVLRA 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +  R+   +         +       +              D       E
Sbjct: 107 GADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILA--------QALRGDDRSKSLDE 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G ++  IA  L I+  TV  ++  ++ K   ++R  A  +AV N++
Sbjct: 159 LTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAVWAVENDL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 232

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++IVL  + +     +  L         +      +     + +L               
Sbjct: 2   ISIVLADDHQIVRHGLKALLEAEADFEVVGEASDGIEAVNLVESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      +        +  K      +   +   ++              
Sbjct: 47  QPGVLVTDLMMGGMSGIE-----VTYQVVKRSP---KTAVVILSMYGNEAYVHEALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +       R +       +   A        +          LT
Sbjct: 99  RAYVLKDSTSEELVRSVREAVQGHRYLSS----PLSEKAIEAYMEKSAEATSLDPYETLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G T  EIA  L IS  TV  + A++MRK   + ++  + YA++  I+
Sbjct: 155 IREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           961-5945]
 gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           G2136]
          Length = 218

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria
           meningitidis FAM18]
 gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria
           meningitidis alpha153]
 gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria
           meningitidis ATCC 13091]
 gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M6190]
 gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           ES14902]
          Length = 218

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMISRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECIRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|329946695|ref|ZP_08294107.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526506|gb|EGF53519.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 254

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 23/244 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +      V     M  + E V G      +       Q    +V  D   
Sbjct: 8   VAVVDDQPLLVSAFSALVDAQPDMEVVLEAVNGREAVDRLSARARDSQGSTDLVLMDLRM 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            ++  ++   + +   V      L    F      +       + +     +   +   +
Sbjct: 68  PVLDGISAIRELRAAPVTASLRVLVLTTFDDEDLVLAALGAGASGFLLKDAEPTTLLEAV 127

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANM----------------------FKSYDVHWGK 182
            ++   G  +       +       A+                               G 
Sbjct: 128 RVVARGGSWLDPAITGTVLAHLDTSADATTGSGANAPQLPTSPVEQSGGAAPVVGAPAGP 187

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LTGRE   L  + +G ++ +I   L ++ +TV +++ +I+ KT    R   + YA+ 
Sbjct: 188 YDPLTGREEAVLALVCQGLSNAQIGERLHVAESTVKSHVKTILGKTGCHNRVELVIYALT 247

Query: 243 NNIV 246
             +V
Sbjct: 248 TGLV 251


>gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 242

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 61/232 (26%), Gaps = 10/232 (4%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKL 74
           D   T  +  L    D           +     M  + E   GA    LV         +
Sbjct: 16  DHAMTDPI-RLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEAVQLVDELAPDVVLM 74

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +           +                 L    F       +      + +    
Sbjct: 75  DIRMPVLDGLGATEKIMT--------GHPEAKILVLTTFDLDEYVHSALRAGASGFMLKD 126

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +     ++       +      +     +          L+ RE E L
Sbjct: 127 AGPTELLAAIRAVRDGDSVVAPSATRRLIERFIPRQGEGAATTTDPKLVETLSDREREVL 186

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T + EG T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +V
Sbjct: 187 TCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV 238


>gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 262

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 75/260 (28%), Gaps = 18/260 (6%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLA--RMIPLDCTVSWTMRMYALTEYVGASHFL 62
           +  ++   + E   R S VS            R+       S           +G  H++
Sbjct: 1   MTPISRRRSNEGPHRPSTVSDRQQAGAPAPLKRLACATDIPSLVESFGHAAGKLGFPHYV 60

Query: 63  LVRWDLFQEQKLDSIVSSD----WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-- 116
           + R    +  +            +P + V+     +      V +       P       
Sbjct: 61  ISRVTRSRSTRAPQTALEMIGSHYPKEWVQHYQRRDYALTDPVHRAAFFQSAPYRWHDII 120

Query: 117 --------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                          AG+               +   L  P   +          L++A 
Sbjct: 121 DLTKADHRFLGEASEAGLPAGLSIPVHQSDGSVLLFNLAGPLHSVNSEINARRACLMSAQ 180

Query: 169 QANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                    +   +     LT  ++ CLTW++ GKTS EI  ILG S  TV+ ++   M 
Sbjct: 181 FNFELHRLGLIHSRRAARLLTPCQIVCLTWVARGKTSAEIGEILGCSHYTVDYHVKKAME 240

Query: 227 KTATKTRSGAIAYAVRNNIV 246
                 R+ A   A    ++
Sbjct: 241 ALNIWGRTAAAVQATVQGLI 260


>gi|260777662|ref|ZP_05886555.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605675|gb|EEX31960.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 210

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 34/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  ++L  +       ++ L +  D    +                    G       
Sbjct: 1   MTECRVLLVDDHPLMRRGINQLLSFEDEFTVVAESSN---------------GTDAVAQN 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D +  +   E       +   T    P      +      
Sbjct: 46  HEHKPDLILLDLNMKGMSGLDTLNALRADE---CDATIVILTVSDSPG-----DIEAIVK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L       +   ++            A      +       
Sbjct: 98  AGADGYLLKDTEPDELVELLKSSLQGNKAYSKE-----------VAKYLAERENISDVFD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 147 DLTDREMQILREVAKGYRNKQIADSLFISESTVKVHMKSLLKKLKVPSRTAATVLYLER 205


>gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 210

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             ++   +++  +       +  L     L + +                    G     
Sbjct: 1   MVMKNYRVMIVDDHPLMRRGIKQLLGLDPLFSVLAEASN---------------GNEAIT 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD  +      D ++ +     D           +   V  +  +    
Sbjct: 46  LALQHTPDVILLDLNMKGLSGLDTLKALRNEGVD--------ARIIVLTVSDSRSDVYAL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +  ++   +        +I               A+   S       
Sbjct: 98  IDAGADGYLLKDSEPEQLLEHIRAAAEGKNVISDA-----------VADYLSSRSEQHDP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 FAELTERELDVLQEVARGLSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAATVMYLE 206

Query: 243 N 243
           +
Sbjct: 207 H 207


>gi|290581010|ref|YP_003485402.1| putative response regulator [Streptococcus mutans NN2025]
 gi|254997909|dbj|BAH88510.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 213

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  ++L  + E     +       D +  +                    G     L 
Sbjct: 1   MSKTKVILVDDHEMVRLGLKSFLNLQDNVEVIGEASN---------------GRQGIDLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LKLKPDVVVMDLVMPEMDGVEATLELLKDW--------KEAKILVLTSYLDNEKIYPVIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K +  +     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIQKVAKGDLAIETE-----------VDKKIKDHHNNPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +++
Sbjct: 147 DLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 218

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  +       V  L      +         +    ++  L             
Sbjct: 3   DKIRVLIVDDHAILREGVRALLQLQPDIEVAGEAADGMQALEQVERL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +    +            +R   L    +            
Sbjct: 50  --DPDVVLMDIAMPGLGGIETSLQLKKLG--------RRARILILSQYEDREYVRRLLKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y       A +   +  +   G ++  +        A        +          
Sbjct: 100 GVSGYVLKKSAGAELANAIRAVHRGGLVLDPEVARTAMEEAG------PAAPGEADPYES 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++EG+++ E+A +LGIS  T  ++   +M K     R+  + +A+R  +
Sbjct: 154 LTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGV 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum
           12472) Bound To C6-Hsl
 gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators
           [Chromobacterium violaceum ATCC 12472]
          Length = 265

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 19/225 (8%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLVRCMALS 93
             ++        +  +     +   +LV     +  Q Q+++ +++  +P D +   +  
Sbjct: 32  GHIETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSYPSDWLNQYSQE 91

Query: 94  EKDKYYNVLQRPTELFCPVFHT------------LPENITPPAGMDNRYCSLTFDVARIR 141
              ++  +++       PV                        GM +             
Sbjct: 92  NFAQHDPIMRIHLGQ-GPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNV 150

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTWIS 198
             ++ +  K        +  +  L  +         +       +  L+ RE +   W+S
Sbjct: 151 GSILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMS 210

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            GKT+ EIA IL IS  TV  ++A+++RK     R+ AI   +  
Sbjct: 211 RGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHL 255


>gi|2765450|emb|CAA75536.1| nitrate/nitrite regulatory protein [Pseudomonas aeruginosa PAO1]
          Length = 216

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 72/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + V ++L  +       V+ L    D L+ +                    G     L  
Sbjct: 7   EPVRLLLVDDHPMMRKGVAQLLELEDDLSVVGEAGS---------------GEEALRLAA 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D +R +  +  D           +   V     + +     
Sbjct: 52  ELDPDMILLDLNMKGMNGLDTLRALREAGVD--------ARIVVFTVSDDKGDVVNVLRA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +  R+   +         +       +              D       E
Sbjct: 104 GADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILA--------QALRGDDRSKSLDE 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G ++  IA  L I+  TV  ++  ++ K   ++R  A  +AV N++
Sbjct: 156 LTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAVWAVENDL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 241

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 92/241 (38%), Gaps = 15/241 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S+++    +S L A +        +   +  ++   G S+  L+     ++  L  ++ 
Sbjct: 1   MSYMTTSERQSLLAAELAVAGTRGLFAQGLGRVSAAFGLSYATLMHAPSPEDLLLKPLLI 60

Query: 80  -SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE------------NITPPAGM 126
            S  P   VR    +   +      R  E   P+   L +             +     +
Sbjct: 61  ESSLPAAYVRDFDRANMMRGCPFGVRLRESAVPLAWHLDDTVNGQAFPAELRALMLRHAI 120

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFE 185
                  T  V   R+       +   + +  + E+ ++  +  + + +           
Sbjct: 121 PAGVAMPTIAVDGRRLVFWFCG-ERAALGQSEVNELAIVILHTLDAYNAVRRNEENAHSA 179

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  +
Sbjct: 180 LSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKL 239

Query: 246 V 246
           +
Sbjct: 240 I 240


>gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 211

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 38/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +VL  +       +     R   +  +            +  L            
Sbjct: 1   MEKITVVLADDHPLTRQGLKAYLARESGVELVGEASDGKEAWEMIEKL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +  +    L R +  +       V           + +    +    
Sbjct: 49  ---RPRVALLDIRMPVEDGISLARKIKDAGLP-VAPV-------MLTSYDSQQYVLASLR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T     +   L  +   G  +  +    +G                  +  
Sbjct: 98  AGAKGFLLKTTSPEALAKALQTVVSGGLYLDSEVASAMG---------------EVPQME 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L + + G +S E+A  L IS  TV  ++ASI  K     ++ A+  A++  
Sbjct: 143 DLSPREREVLLFAARGLSSKEVASHLFISERTVQTHLASIYDKLGAHNKTEAMLLALKYG 202

Query: 245 IV 246
           ++
Sbjct: 203 LL 204


>gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus
           bv. 6 str. 870]
          Length = 235

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 70/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V    +    L  +    +P    +       
Sbjct: 10  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPYLNGSLKWVRFGAFPDGWEQRYLAQNY 69

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 70  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 129

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 130 RSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 189

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 190 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99]
 gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
 gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
 gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365]
 gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19]
 gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo]
 gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308
           A]
 gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038]
 gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M]
 gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40]
 gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           4 str. 292]
 gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           9 str. C68]
 gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           3 str. Tulya]
 gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94]
 gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99]
 gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5
           str. 513]
 gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3
           str. 686]
 gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti
           M490/95/1]
 gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str.
           B3196]
          Length = 238

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 13  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 72

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 73  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 132

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 133 RSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 193 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 232

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +        + E   G     L +         D ++      
Sbjct: 4   IVLADDHHIVRHGLKALLEAEADFNVVGEASDGIEAVNLAQNLQPNVLVTDLMMGGMSGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        +  K      +   +   ++                Y         +   +
Sbjct: 64  E-----VTYQVVKRSP---KTAVVILSMYGNEAYVHEALRAGAWAYVLKDSTSEELVRAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R +       +   A        +          LT RE E L  +S+G T  
Sbjct: 116 REAMQGHRYLSP----PLSEKAIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  + A++MRK   + ++  + YA++  I+
Sbjct: 172 EIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 232

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +        + E   G     L +         D ++      
Sbjct: 4   IVLADDHHIVRHGLKALLEAEADFNVVGEASDGIEAVNLAQNLQPNVLVTDLMMGGMSGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        +  K      +   +   ++                Y         +   +
Sbjct: 64  E-----VTYQVVKRSP---KTAVVILSMYGNEAYVHEALRAGAWAYVLKDSTSEELVRAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R +       +   A        +          LT RE E L  +S+G T  
Sbjct: 116 REAMQGHRYLSP----PLSEKAIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  + A++MRK   + ++  + YA++  I+
Sbjct: 172 EIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|302534040|ref|ZP_07286382.1| two component system response regulator [Streptomyces sp. C]
 gi|302442935|gb|EFL14751.1| two component system response regulator [Streptomyces sp. C]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 10/226 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA  + L R        +D  +     
Sbjct: 13  RVLLADDQALLRSAFKVLVDSEADMEVVGEASDGAQAYALARERRADVVLMDIRMPGTDG 72

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F              + +     +   +   
Sbjct: 73  LAATRMISA------DPELSDVRVVMLTTFEVDEYVAAALRAGASGFLGKGAEPDELLNA 126

Query: 144 LMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           + +      ++       +    L    +A+   +   H  +   LTGRE E L  ++ G
Sbjct: 127 IRVAHAGEALLSPAATKGLIASFLAQGGRADAPATGTAHAERLATLTGREREVLVQVAGG 186

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 187 LSNDGIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 232


>gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 224

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA +I  +  +             G   F            +D  
Sbjct: 3   IRVVVADDQALFRQTLALLIGSEDDMEVVAEA-----ADGEQAFQAALEHRPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +A          L     L    F              + +       
Sbjct: 58  MPGTSGVEATAMIADH------PDLSDVHVLILTTFEVDEHVAQAIRAGASGFIGKGIRA 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++       +    +   +     D   G   +LT RE+E +T +
Sbjct: 112 EDLLDAVRTVAGGNSLLSPIATSALI---SRFLSTPSRADSTSGIFGQLTPRELEVVTLV 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++DEIA  L IS  T   ++   M K   + R+  +  A +  +V
Sbjct: 169 ALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCGVV 217


>gi|1429258|emb|CAA67717.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 218

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+ R +     P   +    +I     ++ +          G     L +        +D
Sbjct: 4   DKIRVALADDQPLVREAFRYVINAQTDMTVSGEAGD-----GHDIIALAKQTKPDVILMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  + +           L     +    F T              Y     
Sbjct: 59  VQMPRCSGIEAAKDIMS--------ALPNTKIVILTTFDTEEYVFEGIRAGAVGYLLKDT 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        I       +I      +    K            T RE+E L 
Sbjct: 111 LPEELIDAIRAAARGEAIFRTVTAAKI----ISETFRAKQQTHAEELAEPFTKRELEVLQ 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  +++IA  L +S +TV  ++  I++K   + R+ A+ +A+RN IV
Sbjct: 167 QMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217


>gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 592

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 34/245 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+ + +  +       +  L    + L  +   +           L             
Sbjct: 377 EQIRLCIVDDHSFIRESLHTLLDGQEDLQVVGMAEDGERALELCERL------------- 423

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  + +    +  + +        +  ++         F +          
Sbjct: 424 --KPDIVLMDLEMPNMDGINATKMIKKK-----WPDMRVLILST---FQSTERAKEIIRN 473

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--- 182
             + Y   + D   +   + L++  G +I  D       L        +   +   +   
Sbjct: 474 GADGYLLKSIDSRELAESIRLVYRGGTMINHD-------LFHRMWEDKEETGLVESRLDG 526

Query: 183 -DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            ++ LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A 
Sbjct: 527 IEYGLTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAK 586

Query: 242 RNNIV 246
              ++
Sbjct: 587 DKGLL 591


>gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 222

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 66/243 (27%), Gaps = 28/243 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E+ +  I+L  + E     +  L         +            +             
Sbjct: 4   LEMPRQRILLVDDHEVVRIGLKALLEHHAQFEVIGEASTAKEAIDMVSRY---------- 53

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      +    +                 +    +       + 
Sbjct: 54  -----HPDIVLMDIRLPGASGIEACEEITTR--------FPDTRVVMLTSYAEDEMLFSA 100

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y         +   L  +     ++       +              +     
Sbjct: 101 IRSGASGYILKQIGGEDLIRALESVGRGEALLDPAVTQRVFQEVRRAV-----KEEEASA 155

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ +E   L  +SEGKT+ EIA  L +   TV NY++SI+ K     R+ A AYAV 
Sbjct: 156 FANLSQQEKHVLLLVSEGKTNREIAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVE 215

Query: 243 NNI 245
           +N+
Sbjct: 216 HNL 218


>gi|152999817|ref|YP_001365498.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|151364435|gb|ABS07435.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 216

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 88/246 (35%), Gaps = 30/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   +++ L  + +     ++ L   SD +  +   +       ++           
Sbjct: 1   MDMQNNIISVGLVEDQQLVRQGIASLLAISDNIRVVWQAEDGQDALSQL----------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +       D  + +     +++ +  S          R   +    F      +
Sbjct: 50  ----ANNPVDVLLSDIRMPNLDGIAMLKQIRQSAN--------RLPVIMLTTFDDSELFL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N +      + ++   +  +   G +I    L ++       +    +  V  
Sbjct: 98  NSLQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQM-------SEPKPAPSVGV 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   
Sbjct: 151 TRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKG 210

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 211 LQLALI 216


>gi|91794405|ref|YP_564056.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91716407|gb|ABE56333.1| two component transcriptional regulator, LuxR family [Shewanella
           denitrificans OS217]
          Length = 219

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 25/244 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            EIQQ N    +  + R   V         +A ++ L   +  T +        G     
Sbjct: 1   MEIQQTNT--AKPSKIRVGLVDDQQLVRQGIASLLALSDKIEVTWQAEN-----GQQALT 53

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L+          D  +       L+  +             +   L    F      +T 
Sbjct: 54  LLASTAIDILLSDIRMPVMDGISLLSHIRADNN--------QLPTLMLTTFDDSELFLTS 105

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N +      + ++   + ++   G +I    L ++               ++  +
Sbjct: 106 LHAGANGFLLKDVSLDKLLNAIEVIAQGGVLIEPVVLNQLSQ----------QAPINAPE 155

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE   L +++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   + 
Sbjct: 156 VNPLSERETSILKFMANGCSNKEIATGVFLAEGTVKNHVSNILSKLGCRDRTRAVLKGLE 215

Query: 243 NNIV 246
             I+
Sbjct: 216 LGII 219


>gi|75910296|ref|YP_324592.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75704021|gb|ABA23697.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 75/254 (29%), Gaps = 30/254 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +VL  + +     +     + D +  +       S    + +             
Sbjct: 1   MNKIRVVLIEDHDLTRIGLRATLQKLDGIEVIGDARDAASGLKLLKST------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L +    S   +     +        +  +    +   A
Sbjct: 49  ---QPDIAIVDVGLPDMSGIELTQHFFNSMDTQQTPQTKIL---IMTMQDSEDTVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-------EIGLLAAY-----QANM 172
              + YC       ++   L L       I             +    A         N 
Sbjct: 103 AGADSYCMKDASTDKLVEALHLTVNGNSWIDPVIARIVLQQTQKATTAANARPDTVAING 162

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                 H  + + LT RE++ L  I +G ++  IA  L +S  TV  ++ +I+ K     
Sbjct: 163 LSPEYSHIVETYPLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSD 222

Query: 233 RSGAIAYAVRNNIV 246
           R+     A+R  +V
Sbjct: 223 RTQIAVRALRAGLV 236


>gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 224

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 11/219 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D  +    L   +     +  ++E   G       R        +D  + +    
Sbjct: 4   VLIADDQPSVRRALRTFLETQPDIKVISEASSGPEAVTQARIRRPDVVLMDVRMPAGDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +A  +      V+          F                +         I   +
Sbjct: 64  TATATLAGPDATDPIPVV------VITTFDLDEYVFGALENGAIGFLLKDAPPTHIIDAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +      +    ++       D +LT RE E L  ++EG ++ 
Sbjct: 118 RAAATGEGLVAPAVTRRV----ISEFARRRAPAARESADADLTPREREVLAALAEGSSNA 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L I   TV  +++SI+ K   + R  AI +A ++
Sbjct: 174 EIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVWAYQH 212


>gi|255525021|ref|ZP_05391967.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296187376|ref|ZP_06855771.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511277|gb|EET87571.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296047898|gb|EFG87337.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 220

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 26/235 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  + E     +  + +  + +  +   +        +                  
Sbjct: 2   INILLVDDQEIVREGIKMILSLDEEINIIGEAENGRELMSFLEKQI-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +            +    +    F              
Sbjct: 48  -PDVILMDVRMPVMDGVEATKLVKEQ--------YKDVKVIILTTFTEDEYIFKGIKNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + Y         I   +   +    ++  +   +I       +   ++ D +  + ++L 
Sbjct: 99  DGYILKDAGSEDIIKAIKTAYNGNILLNPEVAAKIVKAYKSISTEKQNLDKYKTQKYKLD 158

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             T RE++    ++EGK++ +I  +L +S  TV NY+  I  K    +R+    +
Sbjct: 159 LLTKREMDVAKLVAEGKSNKDICKVLFLSEGTVKNYVTKIFEKLQLNSRTELAVF 213


>gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 218

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G     L +  
Sbjct: 3   IRILLIDDHTLFRSGIRLLLQRQSDFEVVDEAAD---------------GLEGIKLAKRH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L     +   V     E         
Sbjct: 48  QPDVILLDLNMPGLSGLETLQLLVQD--------LPLAAVVVLTVSEEADELKAALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +  G+        +I      ++  +A ++A               LT
Sbjct: 100 RGYLLKNIEAETLVAGIRRAAAGEPVISDRMTAKL--VAHFRAPEKAPPAATTPMPDRLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +  ++ G+++ EIA  L ++ +TV  ++ ++++K    +R     YAV + +
Sbjct: 158 PREREIVKGLARGESNKEIARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 215


>gi|319944660|ref|ZP_08018927.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gi|319742099|gb|EFV94519.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 75/249 (30%), Gaps = 34/249 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I+L  +     S V  L  R + L  +      +    R  AL               
Sbjct: 3   ISILLVDDHNLFRSGVRQLLQREEDLCIVAEAADGLEGLKRAKAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +           + +   +   V     E         
Sbjct: 48  RPDVILLDLNMPGLSGLETLHLLTQD--------VPQSKVVILTVSEEAEELGEALRSGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             Y +   +   +   +        +I      ++     +        +         +
Sbjct: 100 VGYLTKNVEAETLVAAIRKAKRGEPVIAESMTMKLVEQFRSQGSGQHGATVTPPDSPSIQ 159

Query: 186 ---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E +  ++ G+++ EIA  L ++ +TV  ++ +I++K    +R   
Sbjct: 160 SGTTPERVHLTAREREIMQCLARGESNKEIARRLDVAESTVKIHVQNILKKLNLSSRVQI 219

Query: 237 IAYAVRNNI 245
             YAV N +
Sbjct: 220 AVYAVENGL 228


>gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis WUE 2594]
          Length = 218

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMINRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDNDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 189

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 21/189 (11%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGM 126
            S++P   ++    S       +++       P F     N             +    +
Sbjct: 1   MSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAKYQL 60

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-- 180
            +       D + +   L L   +        +R++  +I +      +           
Sbjct: 61  SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 120

Query: 181 ---GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +L+ RE   L W++ GK+  EIA I  IS  TV  +++++  K   +T   A+
Sbjct: 121 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 180

Query: 238 AYAVRNNIV 246
             A+   +V
Sbjct: 181 YKAINIGMV 189


>gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 214

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 15/225 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMLLNLRQELEVVG-----TATDGDEVIQKVKELQPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F              + Y     +   I
Sbjct: 56  MNGVEGTRLVREQ--------FPHIKVLMLTTFSDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D      ++   +            +  +LT REV+ L  I  G
Sbjct: 108 AQAILTVHSGGAVLPQDITA--QIIKELKKTKVAVECTTPEQLAQLTEREVDVLREIGLG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 166 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 210


>gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
 gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida]
 gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida
           LFI1238]
          Length = 248

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 71/226 (31%), Gaps = 17/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +   +   ++L          K D ++  ++P         +  
Sbjct: 16  INSSSSNDQINQCLIEVANTLNCEYYLFSIISNKSMIKPDVLILDNYPQKWRDHYDETNL 75

Query: 96  DKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   +                    G+ + +      V      
Sbjct: 76  IKYDPIVDYCFFNHSPILWDIFGKKTLKTNKPNVIQEAKSLGLYSGFSFPIHSVNGSFGM 135

Query: 144 LMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWIS 198
           +             +       I L+     + +   + +  +    LT RE ECL W  
Sbjct: 136 ISFAHSNKKQSTDCLFSTACMYIPLIIPALLDSYYRINKNNTESTHDLTKREKECLAWAC 195

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EGK+S EI++ILG +  TV  ++ +   K  T  R  +++ A+   
Sbjct: 196 EGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAILTG 241


>gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida]
          Length = 223

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 17/210 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +  LT+ +   ++LL         K D  +  ++P         +   K   ++      
Sbjct: 5   LQELTKILHCEYYLLAIISQKTMIKSDIKILDNYPLYWRNYYDEANLIKDDPIVDYSFSH 64

Query: 109 FCPVFHTLPE------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
             P+  ++ E                 +G+ + +             +     +    + 
Sbjct: 65  HSPINWSIFEKQKKMSNQINVIEEAKISGLYSGFSFPIHTKDGGFGMISFASSQKEKYID 124

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISEGKTSDEIAVILG 211
           +      +            +    K+      +LT RE ECL W  EGK+  EI+ ILG
Sbjct: 125 NLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEGKSRWEISKILG 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            S  TV  ++A+   K     R  +I+ A+
Sbjct: 185 CSERTVTFHLANSQLKLGANNRCQSISKAI 214


>gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 213

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 22/231 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+ R           + L +++ LD  +     +       G     + R +      +D
Sbjct: 2   DKARVVIADDHVLVREGLRKLLELDSNIKVIDEVG-----DGQGAINIARKEKPDIIIMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         R +           L     +   V+    E +       + Y     
Sbjct: 57  VNMPGTDGIVATRVIKRE--------LPSVRIIALTVYEGE-EVVDMVKAGASAYILKDV 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             + +   +  +     +I       +        N              LT RE + LT
Sbjct: 108 AGSELVDTIHRVMNGEVVIYPRVANRLVRELRQSENRKSEIR--------LTKREKDVLT 159

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +G T+ E+A ++ IS  TV N++ SI RK   K R+ A  YA++N IV
Sbjct: 160 LLVKGNTNKEMAEVMFISEKTVKNHLTSIFRKLGVKDRTHAAIYALKNRIV 210


>gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 218

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 70/242 (28%), Gaps = 28/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       +  L      +  +           ++  L            
Sbjct: 1   MSKIRVLIADDHAILREGIRALLQLHPDIEVVGDAADGKEAIAQVERL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +            +R   L    +           
Sbjct: 49  ---DPDVVLMDIAMPGLGGIEAALELHKLG--------KRSKVLILSQYEDREYVRRLLK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       + +   +  +   G ++  +        A        +         
Sbjct: 98  AGVAGYVLKKSAGSELANAIRAVNRGGLVLDPEVARTAMQDAGQA-----TPGGAADPYE 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  ++EG+++ E+A +LGIS  T  ++   +M K     R+  + +A++  
Sbjct: 153 ALTDREKQVLKLVAEGRSNKEVAEVLGISVKTAMSHREHVMEKLQVHNRTELVRFALKKG 212

Query: 245 IV 246
           ++
Sbjct: 213 VI 214


>gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 226

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 65/224 (29%), Gaps = 8/224 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA   LL    L     +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEDDMEVVGEASDGAEAVLLAASHLPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +         +     + A +   
Sbjct: 64  LAATRRISA------DPALAAVHVVMLTTFEVDEYVVQSLRAGAAGFLGKGAEPAELLGA 117

Query: 144 LMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +        ++       +     A       +  V   +   LTGRE E L  ++ G +
Sbjct: 118 IRTAAAGEALLSPAATRSLITRFLAQAPGTGPAAGVDSARLAALTGREREVLVQVAAGLS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 178 NDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221


>gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1710b]
 gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10229]
 gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           NCTC 10247]
 gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
 gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei DM98]
 gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 91]
 gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 9]
 gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei B7210]
 gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei 7894]
 gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia pseudomallei BCC215]
 gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710b]
 gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10229]
 gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei NCTC 10247]
 gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei S13]
 gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106b]
 gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei PRL-20]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLLA +            +      +   +        +   +      S++P    R
Sbjct: 5   AEDLLAGLDSARSEEEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWKR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI 140
               +       +L        PV                    G+   +   +FD    
Sbjct: 65  RYVEAGFLDVDPILAHGRRSQQPVVLAETLFASAHQMWVEAQSFGLRFGWAQSSFDAYGG 124

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+  +  +   +      R+  +   A           +    +  LT REVE L
Sbjct: 125 MGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 185 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|197335139|ref|YP_002156737.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
 gi|197316629|gb|ACH66076.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri
           MJ11]
          Length = 203

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 34/228 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+V+  +       +  L +  +                         G     L+  D 
Sbjct: 3   NVVIVDDHPLMRRGIGQLLSFDEEFTLTGEASN---------------GTDAVALISQDE 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +          ++         V     +  T      +
Sbjct: 48  PDLVLLDLNMKGMSGLDTLHALRNEGVT--CPIV------ILTVSDNKQDIKTLIKAGAD 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L      G+                     +       K  +LT 
Sbjct: 100 GYLLKDSEPDELIALLKEAMKGGKAYSE-----------QVKACLEEDAQGDDKLSQLTA 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           RE+E L  +++G  + ++A  L IS  TV  ++ S+++K   K+R  A
Sbjct: 149 RELEILQHVAKGMRNKQVADQLFISEATVKVHMKSLLKKLNVKSRVAA 196


>gi|84387471|ref|ZP_00990490.1| response regulator [Vibrio splendidus 12B01]
 gi|84377724|gb|EAP94588.1| response regulator [Vibrio splendidus 12B01]
          Length = 210

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +S L +  D    +                    G     L   + 
Sbjct: 5   KVMLVDDHPLMRRGISQLLSFEDEFEVIAEASN---------------GTEAVALAHEEE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +                 +   V  +  +         +
Sbjct: 50  PDLILLDLNMKGMSGLDTLKALRTDGSS--------ANIVILTVSDSPADIEAIVKAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +                        +       +LT 
Sbjct: 102 GYLLKDTEPDELIELLKQAHHGDKAYSSVVSR-----------YLNDAESRNDIFDQLTE 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 REMQILQEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           M01-240355]
          Length = 218

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHGFEVIGEAADGLSGIKMINRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDNDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 12/210 (5%)

Query: 38  PLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            L   +     +  + E   G+    LVR        +D  + +       R +     D
Sbjct: 19  GLRAIIDAEPDLTVVGEAGDGSEVLPLVRRTGADVVLMDVRMPAIDGIQATRLL----LD 74

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                 +         F              + +         I   +  +     ++  
Sbjct: 75  GLDPAPRVLVVTT---FENDDYVYDALRAGASGFLLKRTPPDDIIAAIRTVAGSESLLFP 131

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + +  + L  A+     + +       ++LT RE E L  +++G ++ EIA  L +   T
Sbjct: 132 EAIRGLAL--AHAEQQPRQFTGLAR--YDLTEREQEVLRLMAKGLSNAEIATELVLGVQT 187

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++A+++ K   + R+ A+  A  +  V
Sbjct: 188 IKTHVANLLGKLGARDRTQAVILAYESGFV 217


>gi|297201229|ref|ZP_06918626.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712908|gb|EDY56942.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  + ++     +             G      VR        +D  
Sbjct: 3   IRVLVADDQMMVREGFSVLLNAMPDIEVVGEA-----VNGREAVDRVRELAPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +  +E             L    F              + +       
Sbjct: 58  MPELNGIEATREIVAAEGM--------AKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    +  +   +          +LT RE E L  I
Sbjct: 110 RQLAEGVRVVASGEALLAPSVTRRLITEFSKLSESPRLMAAAHTAYGDLTDRETEVLILI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ E+A  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 170 AQGLSNQEMAERLLVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 218


>gi|221133626|ref|ZP_03559931.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 215

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 61/241 (25%), Gaps = 35/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + I+L  +       +S   +  D +A +   +                         
Sbjct: 7   SPIKIMLVDDHPMVRDGLSACLSFYDDIAIVGACNDGTEVLQTAKQCL------------ 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  + +    +    +  +         +           +          
Sbjct: 55  ---PDVILMDISMPNQNGLEATEIIKETF-----PDTKILIFSM---HESSEFVKNAVQA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     D   +   +  +         +    +                    +  
Sbjct: 104 GASGYILKDTDSEEVYQAIKTVAQGKSYFGSNIAQMLL------------ASPTNPSNER 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L+ I+ G++S  IA  L IS  TV  +  +I  K      +  + YA+   +
Sbjct: 152 LTAREQMILSHIATGQSSKAIAHTLDISVRTVEAHRRNIKSKLNIDNLAELVRYAIEQGL 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA    LV         LD  +     
Sbjct: 3   RVLIVDDHPVVRQGLRTFLGLQDDLDVVGEAADGAEAVALVESLAPDVLLLDLKMPVLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +A                L         +         + +     D A +   
Sbjct: 63  LGTLVRLAEHGLSP--------RVLVLTSVGDREDVAPAMRAGASGFLYKDVDPAALVQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +  + A      +   V       LT RE E LT I+ G+++
Sbjct: 115 IRAVHGGQVLLAPEAAEAMLSVPAPAPAPAEGRYVAP-----LTDREREVLTLIASGRSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++  TV  ++++++ K   + R+ A  YAVRN +
Sbjct: 170 REIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211


>gi|21220639|ref|NP_626418.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788218|ref|ZP_05526649.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289772111|ref|ZP_06531489.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|5578847|emb|CAB51249.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702310|gb|EFD69739.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 227

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 9/225 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L          +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAARLAAEQRADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     +   +   
Sbjct: 64  LAATRMISA------DPSLAHVRVVILTTFEVDDYVVQSLRAGASGFLGKGSEPEELLSA 117

Query: 144 LMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +      ++       +    LA               +   LT RE E L  ++ G 
Sbjct: 118 IRVAAGGEALLSPTATKGLIARFLAQQDTTDEDRDPARAERLESLTVREREVLVQVAGGH 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 SNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 222


>gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 229

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 29/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E   +    +      +A +                    GA    LV  +
Sbjct: 3   IRVVVADDHELVRTGFKLILEAEPDVAVVGEARD---------------GAEAVELVARE 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A                L    F              
Sbjct: 48  RPDVVLMDIRMPRLDGIEATRRVAGE----------AVRVLVLTTFDLDEYVYAALRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----VHWGKD 183
           + +        ++  G+ ++     ++       +    A  A                 
Sbjct: 98  SGFLLKDTPAEQLVAGVRVVAAGDALLSPSVTRRVIEQFARPAGSLVGAGSVGAARPPAL 157

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ELT RE+E L  I+ G ++ EIA  L +++ TV  ++A ++ K   + R  A+  A   
Sbjct: 158 DELTERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVVLAYEA 217

Query: 244 NIV 246
            +V
Sbjct: 218 GVV 220


>gi|83643319|ref|YP_431754.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631362|gb|ABC27329.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 207

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 19/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D +  +  +   +     +  + +   G      V         +D  +     
Sbjct: 3   RLVLVDDHILVLEGIRARLEQEPDIDVVAQATDGKQAIDAVAEHQPDVVMMDVSMPRMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    MA                L   + +               Y      V  +   
Sbjct: 63  IDATEYMAQH--------FPDTRVLILSMHNNKEYVSQILHKGAKGYILKDVSVDEMIRA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++  G  I       +          F    +       LT RE   L  ++EGK++
Sbjct: 115 IRTVYEGGTYISSGASAAL----------FSQPQLRGESSASLTHREASVLKKVAEGKSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 165 KAIAEELAISVRTVETHRQNIKAKLGLSSTAELTKYAIKHGLM 207


>gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 75/235 (31%), Gaps = 28/235 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++R  + R             L  +I  +  +S   +        GA    L        
Sbjct: 1   MSRPAKLRILVADDHFIVRSGLVSLIHAEPDMSVVAQA-----ADGAEAVALFTQHQPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +                 L    F    +           Y 
Sbjct: 56  ALLDLRMPVRSGTEAIEQIRRDH--------PHARILVLTAFSGDEDIRKALRAGARGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +  +      I  D    + + ++Y                ELT RE+
Sbjct: 108 LKSSTGEGLIPAIRAVAAGEPWIPNDVATRLAMRSSY---------------EELTSREI 152

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  I++GK + EIA +L IS  TV +++ +IM K     R+ A+  AV+  I+
Sbjct: 153 QVLQEIAKGKANKEIAAVLAISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRGII 207


>gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                V   P     + +++ LD                G+   +           LD  
Sbjct: 5   HTIMIVDDHPLMRRGIKQLLELDSNFDVVAEAN-----CGSDAIIEAAKCQPDVILLDLN 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D ++ +     D           +   V     +         + Y     + 
Sbjct: 60  MKGMSGLDTLKALRNEGID--------ARIIVLTVSDARSDVYAMIDAGADGYLLKDSEP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L      +                     S D       ELT RE++ L  +
Sbjct: 112 EILLENIRLASKGENVFSDAVT-----------QYLSSRDEQVNPFSELTERELDVLQEV 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 161 ARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 206


>gi|289770298|ref|ZP_06529676.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700497|gb|EFD67926.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 235

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 66/243 (27%), Gaps = 27/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +   +      L    D +  +               L               
Sbjct: 15  TTVLIADDQPLQRFGFRMLLESQDDMTVVGEAANGAEAARMAAEL--------------- 59

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +             R   L    F       +      
Sbjct: 60  HPDVVLMDVRMPGLDGIEATRRIVAGGG--------RSRVLILTTFDLDEYAYSGLRAGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY----QANMFKSYDVHWGKD 183
           + +         +  G+  +     ++       +     +          +      + 
Sbjct: 112 SGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPAAGTRDHTPGSPDPRL 171

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  + +G T+ EIA  L ++ +TV  ++  I+ KT ++ R  A+  A   
Sbjct: 172 SPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKTGSRDRVQAVILAYET 231

Query: 244 NIV 246
            +V
Sbjct: 232 KLV 234


>gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 240

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD----WPFDLV 87
            L   +  +   S T  +      +G   + + R   F+ +    I +      +P + V
Sbjct: 7   FLVPFLKANNLRSLTNLLANAAHSLGFPCYAVSRVSRFRSRSSPRIFAETIHVHYPDNWV 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDV 137
                 +      V +       P                      AG+ +      ++ 
Sbjct: 67  NHYLAHDYGLVDPVHRAAFIYNSPYRWSDIPGLSEPERRVLGEAHDAGLTHGISIPIYEP 126

Query: 138 ARIRIGLMLLFPKGRI---ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               +      P  R+   +   R     LL   +                L+ R+ ECL
Sbjct: 127 DGSVLLFSFSGPPHRVNTALNVRRAQLASLLFHAEFQRLAPIPHVEPPTLRLSPRQQECL 186

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W+ +GKTS EI +I+GIS +TV+ +++  M+     +R+ A  +A    ++
Sbjct: 187 YWVGQGKTSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFASTYGLI 238


>gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 241

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS--SDWPFDLVRC 89
            L +    D   +      A  E  G   F         +    S     + +P  +   
Sbjct: 8   FLEQSADSDSNEALCHAFKAFVETFGVEAFGYQVLPSPFDAADTSFDFEYNTFPEAMQDV 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFD 136
                   +  V  R      P F    E              +   +G  + +    F 
Sbjct: 68  YFEERLYDHDPVTSRAATALQPQFWFDVEQTTPGTRFSQRLFELLRQSGFVDGFTIPVFG 127

Query: 137 VARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANM---FKSYDVHWGKDFELTGREV 191
              +    +          +   +L  + L      +     + YD        L+ REV
Sbjct: 128 PYGL-AAFVACGRFSGAFNLTAIQLRMLQLGCQELYSRTIMLRDYDAPAPP--HLSEREV 184

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W++ GK++  IA ILG+S +TV+  +     K     R  A+  A+R  ++
Sbjct: 185 EILQWLARGKSNAVIAAILGVSPHTVDTIMRRAFVKLNASNRIAAVLKALRVGLI 239


>gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 214

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 66/241 (27%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +       VS L      +  +                    GA      
Sbjct: 1   MSDLRVLVVDDHPLFRIGVSTLLAAEPGIEVVGEAAG---------------GADAVASA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         R +  +              L   +            
Sbjct: 46  TALRPDVVVMDLHLPDLSGIQATRHIVAAN--------PGTGVLMLTMADESESVFAAMR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +   I   +  +  +  I   D       +A      F    V      
Sbjct: 98  AGARGYLLKDAEPDEIIRAVRAVARREAIFGPD-------IANRVLAFFNQPPVSEPVFP 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELTGRE E L  I+ G ++  IA  L +S  TV N+I+++  K     R+ AI  A    
Sbjct: 151 ELTGREREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRARDAG 210

Query: 245 I 245
           +
Sbjct: 211 L 211


>gi|256391849|ref|YP_003113413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358075|gb|ACU71572.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +D+   + +  + +    +  +       +       +            
Sbjct: 1   MSALRVLIVDDDDLMRAGLCAVLSSDTTIEVVAEAADGHAAVQAAARVL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         R +  +          R   L    F          A
Sbjct: 50  ----PDVILMDVRMPVLDGIAATRQIVAAW--------PRARVLILTTFEDDDYVYGALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         +   +  +     ++          +                +  
Sbjct: 98  AGASGFLLKRTRPEHLIAAIHTIAGGEALLSPAVTR---TVIDRMIEQPARDPRTMRRLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  ++ G ++ EIA  L +S +TV  ++  I+ K   + R  A+  A    
Sbjct: 155 ALTPRERDVLELVARGLSNPEIAQTLVVSESTVKTHMKRILDKLDLRDRVQAVILAYEAG 214


>gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 224

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 66/235 (28%), Gaps = 15/235 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ +D  +   V   P   D +AR    +            T   G       +      
Sbjct: 1   MSDKDLIKVMVVDDHPMWRDAVAR-DLAESGFDVV-----ATAGDGDQAVRRAQAAAPDV 54

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +       + + +                 L         + +         Y 
Sbjct: 55  LVLDLNLPVKPGVQVCKELVGHN--------PALRVLVLSASGEHADVLEAVKSGATGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGRE 190
             +     +   +        +        +       A+      D    +  ELT RE
Sbjct: 107 LKSASTEELLDAVRRTAVGDPVFTPGLAGLVLGEYRRLASDPAPASDPDRPRAPELTERE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 167 TEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 221


>gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 232

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +        + E   G     L +         D ++      
Sbjct: 4   IVLADDHHIVRHGLKALLEAEADFNVVGEASDGIEAVNLAQNLQPNVLVTDLMMGGMSGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        +  K      +   +   ++                Y         +   +
Sbjct: 64  E-----VTYQVVKRSP---KTAVVILSMYGNEAYVHEALRAGAWAYVLKDSTSEELVRAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R +       +   A        +          LT RE E L  +S+G T  
Sbjct: 116 REAMQGHRYLSP----PLSEKAIEAYMEKTAEATSLDPYETLTIREREVLHLVSQGYTCA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  + A++MRK   + ++  + YA++  I+
Sbjct: 172 EIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         +        + E   G                +D  +     
Sbjct: 3   RVLLADDQVLVRAGFRVLLETEDGFEVVGEAGDGEQAVAGAIEHHPDIVVMDVRMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  +        L     L    F              + +     +   +   
Sbjct: 63  LEATRRITAN------PDLAGTKVLVLTTFDVDEYVYEALRAGASGFLLKDTEPVELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L ++     ++       +           ++  +      E+T RE E L  ++ G ++
Sbjct: 117 LRVVANGEALLAPTVTRRLIQ---EFVGRPENRRIDTSAVREITDREREVLGLVAGGMSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L IS  T   +++ IM K   + R+  +  A  + +V
Sbjct: 174 DEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGLV 216


>gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
 gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca
           ATCC 29256]
          Length = 218

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +                    G S   +    
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQSDFEVIGEAAD---------------GLSGVKMAEQL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +     ++        T +   V     +         
Sbjct: 48  KPDVVLLDLDMPVMNGREALAQILGVNPNQ--------TVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
             +     +   +   +        +   +    +        ++         +    L
Sbjct: 100 RGFLLKNINADFLLDSIRKAVDGDNVFSPEMTTRL------VQSLISPSAPRTDQALSTL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++
Sbjct: 154 TPRELEILGYLAAGHSNKVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|284029107|ref|YP_003379038.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808400|gb|ADB30239.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 216

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +  T  +  + E   G     L R        +D  +     
Sbjct: 3   RVLVVDDQDLVRAGLRLLIDNTDDLRVVGEASDGREALALAREHQPDVVLMDLQMPVMGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +      K   V+          F    + +       + Y         +R  
Sbjct: 63  VETTAAIRADPLLKDTPVV------VLTTFDHDADVVDAVQAGASGYLLKDLAADELRGA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  I      ++  L  ++ +   S  V       LT RE++ L  +  G ++
Sbjct: 117 IRTAVTGGAPIAP----KVAKLMMHRISRMPSRKVQEETLAGLTARELDILAHVGRGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EI   L +S  T   Y++ ++ K   + RS  +  A +  +V
Sbjct: 173 EEIGQALFLSPETARTYVSRLLAKLGVRDRSQLVVLAHKAGLV 215


>gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
 gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase
           [Bacillus clausii KSM-K16]
          Length = 219

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L          +D  +     
Sbjct: 2   RILLADDHHVVRKGLAYFLEAHPDIEIVAEASNGEEAVALYERHRPDILLMDIDMPVMDG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  +          +        +      I         Y     +   +   
Sbjct: 62  IQATHVILRNH--------PQAKVFMLSGYGEKDFVIQALQAGACGYQLKDVEPDVLIYT 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +    +  +        ++ +S +    K   LT REV+ L  IS GK++
Sbjct: 114 IQAANSGELPLDPRIMKHV------LTHVARSANSVADKVNRLTDREVDVLKEISTGKSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L IS  TV  ++++++ K   + R+ A  +A++  I
Sbjct: 168 KEIAAALFISEKTVKTHVSNLLGKLELQDRTQAALFAIQAGI 209


>gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 236

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 13/226 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +  ++     +  + E   G     L          +D  +      
Sbjct: 9   VLIIDDHPLFRQGIRWSLESAHDIEVVGEAENGQEAIKLTERLFPDVVLVDINLPGLNGL 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +   E         R   +   V+    +           + S       +   +
Sbjct: 69  EVARVIKRRE--------PRTGIIVLSVYEDEEQLFQAIKVGAAAFTSKDISPEELVHMI 120

Query: 145 MLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEG 200
             +     +I    L    +     +Q     + D   G      LT RE+E L  I+ G
Sbjct: 121 REVARGRYLINDAVLAHPNVAARVLHQFRELAATDEEDGASLFAPLTSREIEILDCIARG 180

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L IS  TV N+I SI+ K     R+ A+  A++   +
Sbjct: 181 LSNKEIASELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKGWI 226


>gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 232

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 65/239 (27%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++IVL  +       +  L         +                    G     L    
Sbjct: 2   ISIVLADDHHIVRHGLKVLLEAETDFNVVGEASD---------------GIEAVNLTESL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      +        +  K      +   +   ++              
Sbjct: 47  QPNVLVTDLMMGGMSGIE-----VTYQVVKRSP---KTAVVILSMYGNEAYVHEALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +       R +       +   A        +          LT
Sbjct: 99  RAYVLKDSTSEELVRAVREAMLGHRYLSP----PLSEKAIEAYMEKSAEATSLDPYETLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +S+G T  EIA  L IS  TV  + A++MRK   + ++  + YA++  I+
Sbjct: 155 IREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213


>gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 237

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 15/234 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
                 R           + L  ++ L   +             GA    L         
Sbjct: 6   GDARPIRVVVADDQRVVREGLTMVLGLMPELEVVGAA-----SDGAEAVALAERLDPDVV 60

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +  R +                 +    +      +         Y +
Sbjct: 61  LMDLRMPRCDGVEATRLLRERR--------PGVRVVVLTTYSDDRSVLDALRAGARGYLT 112

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  IR  L  +      I         LL A      +   V   +   LT RE E
Sbjct: 113 KDAGGPEIREALRRVLDDRAAIDPAVQH--HLLEALAGGRPEPVPVAPQRPAGLTAREAE 170

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT ++EG ++ EIA  L +S  TV +++  ++ K   + R+ A+A+A RN +V
Sbjct: 171 VLTLVAEGLSNAEIARRLVVSEGTVKSHMNHLLAKIDARDRAQAVAFAYRNGLV 224


>gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201]
 gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 214

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 15/225 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D LA ++ L   +         T   G      V+    +   +D  +  
Sbjct: 1   MIVDDQSLIRDGLAMLLNLRQELEVVG-----TATDGDEVIQKVKELHPEIILMDIRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 L    F              + Y     +   I
Sbjct: 56  MNGVEGTRLVREQ--------FPHIKVLMLTTFSDSELIFEALEQGASGYLLKDMETDAI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G ++ +D      ++   +            +  +LT REV+ L  I  G
Sbjct: 108 AQAILTVHSGGAVLPQDITA--QIIKELKKTKVAVECTTPEQLAQLTEREVDVLREIGLG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L I+  TV N++++++ K   + R+ A  YAVR  I
Sbjct: 166 LNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYGI 210


>gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 212

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 65/240 (27%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  + +               +AR+                    G     +V+ 
Sbjct: 4   PIKVVIVDDHQVVL---------DGFIARLETEQDIEVIGSA------SNGVEAIEVVKN 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     +D  +      D    +           L     L   +       +      
Sbjct: 49  LLPDVVLMDVSMPLMNGIDATAVIKEE--------LPEVKVLMLTMHDNREYIMKVMQVG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        R+   +  ++             +           +       K   L
Sbjct: 101 AVGYMLKEICARRMVQAIKTVYQGSTYFCESVTQTL---------FSQEVIPSSSKPNPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE   L  ++EGK+S E+A IL IS  TV  +  +I  K    + +    YAV   IV
Sbjct: 152 SRREEAILKLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKYAVEKGIV 211


>gi|302538376|ref|ZP_07290718.1| predicted protein [Streptomyces sp. C]
 gi|302447271|gb|EFL19087.1| predicted protein [Streptomyces sp. C]
          Length = 516

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 62/229 (27%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     LA ++  D  +             GA    L +        +D  
Sbjct: 295 IRVLIADDQPLVRRGLALILAPDPGIEVVGEA-----ADGAEAVALAQELHPDVVVMDIR 349

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +A         V      L    F      +         +       
Sbjct: 350 MPVLDGVAATARLAE--------VRPGARVLALSTFDMDEYVVAALRAGACGFLPKDVSP 401

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +    L  +       A            D  LT RE+E    +
Sbjct: 402 EELIAAVRTVHTGEAAVAPRLLTRLLSTYVRTAPREPRPAPATTPD-GLTPRELEIWRLL 460

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G  +  IA  L IS +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 461 ARGLDNAAIAAELDISVSTVKNHITAVFGKLGVRDRAQAVIAAYETGLV 509


>gi|297203477|ref|ZP_06920874.1| two-component system regulatory protein [Streptomyces sviceus ATCC
           29083]
 gi|297148424|gb|EFH28981.1| two-component system regulatory protein [Streptomyces sviceus ATCC
           29083]
          Length = 220

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     +    L    D +  +                    G     LVR  
Sbjct: 2   IRVALVDDQALMRAGFRALLDAEDGIEVVGEAAD---------------GERGVELVRAQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +      +  R +A          L     +    +              
Sbjct: 47  VPDIALIDVQMPVMTGIEATRRIAA------DPELADVRVVILTNYGLDEYVFEALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     + A +   + ++     ++       +       A+         G +  LT
Sbjct: 101 SGFLLKDTEPADLLQAIEVVARGEALLSPAVTRTLI---GEFASRPPDRSTAPGLEC-LT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E     + G T++EIA  + IS  T   +I+  M K   + R+  + +A  + +V
Sbjct: 157 RREREVTALAARGLTNEEIAEHMVISPLTAKTHISRAMTKLGARDRAQLVVFAYESGLV 215


>gi|217974227|ref|YP_002358978.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217499362|gb|ACK47555.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 216

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 88/246 (35%), Gaps = 30/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   +++ L  + +     ++ L   SD +  +   +       ++           
Sbjct: 1   MDMQNNIISVGLVEDQQLVRQGIASLLAISDNIRVVWQAEDGQDALSQL----------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +       D  + +     +++ +  S              +    F      +
Sbjct: 50  ----ANNPVDVLLSDIRMPNLDGIAMLKQIRQSANS--------LPVIMLTTFDDSELFL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N +      + ++   +  +   G +I    L ++       +    + +V  
Sbjct: 98  NSLQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQM-------SEPKPAPNVGV 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   
Sbjct: 151 TRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKG 210

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 211 LQLALI 216


>gi|256785092|ref|ZP_05523523.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289768986|ref|ZP_06528364.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289699185|gb|EFD66614.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 56/225 (24%), Gaps = 18/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSD 81
           V  L    D       L            L E  G                 +D  +   
Sbjct: 16  VISLLIVDDHPVVRDGLRGMFESAPGFRVLGEAAGGTEAVERAAALDPDVVLMDLRMPGG 75

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +R +             R   L    + T  + +         Y         + 
Sbjct: 76  SGVAAIRELTRRG--------ARARVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDDLF 127

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++       +                       L+ RE E L  ++ G 
Sbjct: 128 TAVRAAAQGRTVLSPAVASRLV---------SAVRAPKTPGAEPLSAREREVLALVARGT 178

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L IS  TV  ++  +  K     R+ A+A A    I+
Sbjct: 179 SNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223


>gi|21223813|ref|NP_629592.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7105984|emb|CAB76009.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 224

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 56/225 (24%), Gaps = 18/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSD 81
           V  L    D       L            L E  G                 +D  +   
Sbjct: 16  VISLLIVDDHPVVRDGLRGMFESAPGFRVLGEAAGGTEAVERAAALDPDVVLMDLRMPGG 75

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +R +             R   L    + T  + +         Y         + 
Sbjct: 76  SGVAAIRELTRRG--------ARARVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDDLF 127

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++       +                       L+ RE E L  ++ G 
Sbjct: 128 TAVRAAAQGRTVLSPAVASRLV---------SAVRAPKTPGAEPLSAREREVLALVARGT 178

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L IS  TV  ++  +  K     R+ A+A A    I+
Sbjct: 179 SNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223


>gi|302546104|ref|ZP_07298446.1| transcriptional regulatory protein DegU [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463722|gb|EFL26815.1| transcriptional regulatory protein DegU [Streptomyces
           himastatinicus ATCC 53653]
          Length = 228

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 62/225 (27%), Gaps = 2/225 (0%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++     ++    ++ +D    W   +       G              ++  +      
Sbjct: 1   MTDDVREAEPPVTVMVVDDHPMWRDAVARDLSEAGFDVVATAGDGPQAVRRAKAAEPDVL 60

Query: 83  PFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
             DL       +    +      +   L         + +         Y   +     +
Sbjct: 61  VLDLNLPGLPGVEVCKEVVAAHPKLRVLVLSASGEHADVLEAVKSGATGYLLKSASTEEL 120

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +        +       A+             +LT RE E L  +++G
Sbjct: 121 IDAVRRTAVGDAVFTPGLAGLVLGEYRRLASEPAPATADQPVAPQLTERETEVLRLVAKG 180

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 181 LSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 225


>gi|237749020|ref|ZP_04579500.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
 gi|229380382|gb|EEO30473.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
          Length = 214

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       +  +   +D +  +                    G S    VR  
Sbjct: 2   IRIVIADDHTLMREGLKRIFEGNDEITVVGEAID---------------GFSVISQVRKG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      DL+R +             +   L   ++      +       
Sbjct: 47  GFDMLLLDLSMPGRSGIDLIRQIRTEA--------PKLPILVLTMYEEEQYAVRSIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +      ++   +  +      I  +   ++ L                    +L+
Sbjct: 99  QGYLTKESAGDQLVNAIKKVASGRPYISMEVAEQLALGIM--------TPEKEMPHTQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++ GK+  +I   L +S  TV+ + + I+ K    + +  + YAV  N++
Sbjct: 151 DREFEVFNLLASGKSITDIGAQLHLSVKTVSTHKSRILTKMGMHSLAEIVQYAVTQNLL 209


>gi|315648982|ref|ZP_07902076.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315275663|gb|EFU39017.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 217

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I+L  + +     +    +       +            +    E          
Sbjct: 1   MGTIRILLADDHDMVRMGLKTYLSLDPGFEVIGEAANGQEVVDMLRNGDEA--------- 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +  R +     D+          +    F      +    
Sbjct: 52  --SRPDLILMDLMMPVMNGAETTRAVMSEFPDQ--------KIVILTSFLEDELVVECIE 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T     +   L   F    ++ +D    +               +  G + 
Sbjct: 102 AGAVSYVLKTVSADELIYALQGAFRGMPVMTKDVSEALT--------RGIRRHMVNGDES 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EG+++ EI   L IS  TV  ++++++ K     R+    YA R  
Sbjct: 154 GLTEREKEVLLLIAEGRSNKEIGEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKG 213

Query: 245 IV 246
            V
Sbjct: 214 WV 215


>gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 215

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 72/244 (29%), Gaps = 34/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             +  + ++L  + E     +         +  +                    G     
Sbjct: 1   MTMSNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASN---------------GREGVE 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D ++      +    +            +    L    +    +    
Sbjct: 46  LALALKPDVLVMDLVMPELGGVEATLEILDKW--------KDAKVLVLTSYLDNEKIYPV 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T   A I   +  +      I  +                K++D H   
Sbjct: 98  IDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETE-----------VDKKIKAHDQHPDL 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R
Sbjct: 147 HEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 206

Query: 243 NNIV 246
           +++V
Sbjct: 207 HHLV 210


>gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 261

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 66/218 (30%), Gaps = 23/218 (10%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                          ++G   +        +  K   ++ S++P   ++    S      
Sbjct: 22  APLRQLIEDFENDLHHIGDFTYAYFSTPKTRNVKP--VILSNYPDSWLKSYVASNYHLID 79

Query: 100 NVLQRPTELFCPVFHTLPENIT------------PPAGMDNRYCSLTFDVARIRIGLMLL 147
            +++       P F     N                  + +       D + +   L L 
Sbjct: 80  PIIKHAWHSITPFFWREARNAAQGVETDDFLKRSAKYQLSSGATFTLHDASGLFAALSLC 139

Query: 148 FPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW-----GKDFELTGREVECLTWIS 198
             +        +R++  +I +      +                  +L+ RE   L W++
Sbjct: 140 NARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHELFPQPAQCKLSTRETGVLKWVA 199

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            GK+  EIA I  IS  TV  +++++  K   +T   A
Sbjct: 200 MGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 237


>gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 250

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 67/261 (25%), Gaps = 44/261 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  +          +    D L  +           ++  +              
Sbjct: 6   PIKVLLVDDQPLLRMGFRLILEGEDDLRIVGEASDGAEAIRQVREV-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  S              +    F             
Sbjct: 52  -DPDVVLMDVRMPVLDGIEATRAVTSSGS--------HAKVIILTTFDLDEYAFAGLQAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
            + +       + +   + ++     ++       +      + N         G     
Sbjct: 103 ASAFLLKDVAPSELVSAVRVVASGDAVVAPRVTRRLLEAYVREGNPPAVNGQRAGTSAPA 162

Query: 186 --------------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                               LT RE+E L  ++EG ++ EIA    +S  TV  ++  I+
Sbjct: 163 AGRGRHSLGEEQQRDPLLEALTPREMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRIL 222

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+ YA    +V
Sbjct: 223 AKLHLRDRVQAVVYAYETGLV 243


>gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 220

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 30/246 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++NI+L  +       +            +      +     +  L            
Sbjct: 1   MKKINILLVDDHTIVRDGIKATLKDQKNFHIVGEAANGLDGIEAVKQL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    ++    D           L   +       +    
Sbjct: 49  ---KPDVVIMDITMPEMSGIEAADVISKKYPD--------SKVLILSMHDNETYILKSVE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---- 180
                Y     D       +  ++   +           L++ Y  +  K  D       
Sbjct: 98  AGAYGYLLKDVDKDEFIKAITAVYNGDKYFNTAI--SSVLVSGYL-SKVKQTDSIQSGYS 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             ++ELT RE   L  I++GK + EIA  LGIS  T+  + A+IM+K   K     +  A
Sbjct: 155 NDEYELTKREKGILKMITDGKNNREIADGLGISIRTIETHRANIMKKLKVKNAVELVRIA 214

Query: 241 VRNNIV 246
           +   IV
Sbjct: 215 IDEKIV 220


>gi|302530267|ref|ZP_07282609.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439162|gb|EFL10978.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 13/225 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D     + L   V     +  + E   GA    L R        +D  +   
Sbjct: 1   MTSVLICDDQELVRVGLRMIVDSQPDLEVVAEAGDGAEAIELARAQRPDLVLMDVRMPVL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +           L   + L    F       +      + +         + 
Sbjct: 61  DGVAATAQICAE--------LPETSVLVITTFDLDEYAYSALRAGASGFLVKDAPSDEML 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +  +     ++       +               +   K   LT RE + L  I+ G 
Sbjct: 113 VAIRGVLRGDAMVSPSVTKRLLDRYLSAH----RTPLDEQKLETLTEREKDVLGLIARGL 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L I   TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 169 SNTEIAGTLFIGETTVKTHVGRLLNKLGLRDRVHAVVFAYESGLV 213


>gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
 gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC
           23457]
 gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9]
          Length = 238

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 13  MQSADSADQLFGIVKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 72

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 73  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 132

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 133 RSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 193 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 221

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 61/221 (27%), Gaps = 11/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   +    +   + E       + +          D I+       
Sbjct: 9   VMIVDDHDMVRTGLRTYLMLEPKFEVVAEAGSGQAAISMLEAGLPSGLPDVILMDLMMPG 68

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +       +    Y        +    F    +           Y   T     +   L 
Sbjct: 69  MDGIETTRQLIVEYP---NLKIIMLTSFLEDDKVYGAIEAGAVSYVLKTVSAEELIYALH 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  ++  D    +                    D ELT RE E L  I+EG+++ E
Sbjct: 126 GAVKGMPVMTADVSQALT--------RGLRQRTAQSGDEELTEREKEVLLLIAEGRSNKE 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L IS  TV  ++++++ K   + R+     A R   V
Sbjct: 178 IGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHRKGWV 218


>gi|158316449|ref|YP_001508957.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111854|gb|ABW14051.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 223

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 61/222 (27%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     +  + E   GA    L R        +D  +     
Sbjct: 3   RVLLADDQALIRAGFRVLVEAAADITVVAEAADGAEAVRLARETRPDVILMDIRMPGTDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     L    F              + +     +   +   
Sbjct: 63  LSATRELTG------DPTLNEVKVLVLTTFELDEHVFEALRVGASGFLGKGVEPDELVAA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+  Y                 LT RE E +  I+ G T+
Sbjct: 117 IRVVARGDALLSPQATR--HLIEQYLRQPATPAPAVTAGLDLLTKRENEIVRLIAYGLTN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           DEIA  L +S  TV  +    M K A + R+  +  A +  +
Sbjct: 175 DEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTGL 216


>gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
 gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187]
          Length = 254

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 76/222 (34%), Gaps = 12/222 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + +   R+           ++  L       ++ L        Q+ D  + +  P +  
Sbjct: 7   PQEEQHFRIQNCKTPQMLANQLTILCAANNFEYYQLCLTLRRGLQQTDLTLLTQTPDNWA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRYCSLTFDV 137
              A +   +  ++ QR      P+F                     GM+          
Sbjct: 67  EHYAKNNTIQNDSLYQRAQTQSRPLFWQSEAKPEHENFLPMDCWRQFGMEEGIAVPLHGP 126

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A       L   K   I     + +  L                 +  L+GRE ECL W+
Sbjct: 127 AGFCGYFALSRHKKEPIRLQDFFHLSYLGHILQEQAIQLFSPEQSN--LSGREKECLFWV 184

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           SEGKTS EIA ILGI+  TVN ++ + +RK+  K R   +A 
Sbjct: 185 SEGKTSWEIAQILGITERTVNFHLNNAIRKSGCKNRYQTVAK 226


>gi|254393044|ref|ZP_05008206.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706693|gb|EDY52505.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 221

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 9/213 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +D    W   +       G                 Q    D +V      +L       
Sbjct: 3   VDDHPMWRDAVARDLAEAGFDVVATAGDGAQAVRRAQAAAPDVLVLDLNLPELPGARVCK 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E       L+              + +         Y   +     +   +        +
Sbjct: 63  ELIGSLPGLRVL---VLSASGEHADVLEAVKSGATGYLLKSASTEELIDAVRRTADGDAV 119

Query: 154 ILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                    +G           +      K   LT RE E L  +++G +  +IA  L I
Sbjct: 120 FTPGLAGLVLGEYRRLAGEPAPTPGGPEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVI 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ + + K     R   + YA+   +
Sbjct: 180 SHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010]
 gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010]
          Length = 215

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  + E     +        L   +  +         +                   
Sbjct: 3   TILIVEDSEATRKRLEDAVINGGLFELVGSVGTYTEGLAFIR---------------NTP 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      DL++ + L         ++    +   VF      I       +
Sbjct: 48  PDILLTDLDLPDGSGVDLIKLINL-------PAIKTQLAIVITVFGDGYHVIEALKAGAS 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   I   +  +   G  I         LL           +     D  L+ 
Sbjct: 101 GYLLKDDDFMDINEAISQMVDGGAPISPSIAR--YLLNELSIAEPAKPEQKNSPDV-LSP 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  +S+G TS EIA +L +S  TV  Y++++ +K + K +  A++ A    I+
Sbjct: 158 REKEVLLLVSKGYTSKEIAKMLDLSYYTVREYVSNVYKKLSVKNKMQAVSEATLLGII 215


>gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2]
 gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580]
 gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC
           14580]
 gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2]
          Length = 211

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 68/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +  +                    G     L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLESQPDIEVIGEASD---------------GKRGVELALET 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  KPDVILMDLVMEGMDGIEATKQICRQL---ADP-----KIIVLTSFVDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +         +          +A    +  +           LT
Sbjct: 99  LSYLLKTSKASEIADAIRAASVGEPKLE-------AKVAGKVLSKLRHSAGEQPLHQSLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++EGKT+  IA  L I+  TV  ++ +I+ K     R+ A  YA RN +V
Sbjct: 152 ARELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDDRTQAAIYAHRNKLV 210


>gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13]
 gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
 gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1]
 gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653]
          Length = 235

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 10  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 69

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 70  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 129

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 130 RTGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 189

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 190 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|239939951|ref|ZP_04691888.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986435|ref|ZP_04707099.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 206

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 66/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L    L     +D  +     
Sbjct: 3   RVLLADDHPVVREGLRGMLDAEADLDVVGEADSGPRAEALCAELLPDIVLMDLRMPGGGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +  +              +    + +  + +       + Y         +   
Sbjct: 63  VESIRRIRAAGLP--------CRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++          +A    +  +           L+ RE + L  ++EG T+
Sbjct: 115 IRAAARGETVLAP-------TVATRLVDRLRGVPELP----RLSERETQVLRLVAEGCTN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L I  +TV  ++  I  K     R+ A+  A+R+ ++
Sbjct: 164 AEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 206


>gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 221

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    L    D +  +  +                 GA    + R +
Sbjct: 2   IRVLLADDQALVRAGFRSLLNAEDDITVIGEVSD---------------GAQAVEVARAE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   E       L     +    F              
Sbjct: 47  KPDVVLMDIRMPGTDGLEATRQIGAEE------ALSDVHVVILTTFDLDEYVFEALRVGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   + ++     ++       +      +            +   LT
Sbjct: 101 SGFLVKDTEPVELLQAVRVVARGDALLSPGVTRRL----VAEFATRSRQPHASKELDVLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  + EG ++DEIA  L +S  T   +++  M K   + R+  +  A +  +V
Sbjct: 157 EREREIVALVGEGLSNDEIAARLVLSPATAKTHVSRAMVKLGVRDRAQLVVVAYQTGLV 215


>gi|158315520|ref|YP_001508028.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110925|gb|ABW13122.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 226

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 57/223 (25%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   G       R        +D  +     
Sbjct: 4   RVLLADDQTLLRATFRILIDSCEDMEVVAEAADGHEAIAAAREHHPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F              + +         +   
Sbjct: 64  LAATAAICS------DETLAATHVLILTTFEIDEYVTQALHVGASGFLGKDVGTDELLTA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +            +   +      LT RE E +  ++EG ++
Sbjct: 118 IRTIAGGDALLSPAATRALIARFLATPEPTATARTNPAVLTTLTAREREVMVLVAEGYSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS  T   ++   M K   + R+  +  A ++ ++
Sbjct: 178 HDIARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQSGLL 220


>gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
 gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv.
           6 str. 870]
          Length = 238

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 70/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V    +    L  +    +P    +       
Sbjct: 13  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPYLNGSLKWVRFGAFPDGWEQRYLAQNY 72

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 73  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 132

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 133 RSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 193 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|239939391|ref|ZP_04691328.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 325

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 10/192 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G     LVR        +D  +         R +           L     +    F 
Sbjct: 138 ADGEEAVRLVRELRPDIVLMDIRMPRLDGLAATRRITG------DPELNDVKVVMLTTFE 191

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                        + +     +   +   +  +     ++       +      +     
Sbjct: 192 LDEYVFEALRNGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRL----IAEFAARS 247

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE E +  +  G +++EIA  L +S  T   +++  M K   + R+
Sbjct: 248 KEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRA 307

Query: 235 GAIAYAVRNNIV 246
             +  A  + +V
Sbjct: 308 QLVVLAYESGLV 319


>gi|238064526|ref|ZP_04609235.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237886337|gb|EEP75165.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 229

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 15/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R       P        ++  +  +             G     L R  L     +
Sbjct: 9   PRPVRILLADDQPLLRTGFRMVLGSEDGLDIVAEAG-----DGVEAVELSRRLLPDVVLM 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +         R +  +              L    F      +       + + +  
Sbjct: 64  DIRMPRMDGVAATRAIVDARLP--------VRVLILTTFDLDEYVVGALRAGASGFLAKD 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +     ++    L  +  L  +   +             LT RE E L
Sbjct: 116 VPAEDLITAIRTVAAGDAVVAPRILKRL--LDRFADALPDPAATPPKALNALTEREREVL 173

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++ EIA  L +S  TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 174 VQVARGLSNAEIARELTVSETTVKTHVGHVLTKLGLRDRVQAVVFAYESGLV 225


>gi|225868023|ref|YP_002743971.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701299|emb|CAW98303.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 213

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E     +         +  +                    G     L 
Sbjct: 1   MSNITVILVDDHEMVRMGLKSFLNLQQDVDVIGEASN---------------GREGVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LTLRPDVVVMDLVMPELGGVEATLEILSKW--------KEARVLVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D       
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVAKGELAIETE-----------VDKKIKAHDQQPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|156741340|ref|YP_001431469.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232668|gb|ABU57451.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 230

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 65/228 (28%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
           +S  + +    D       L   ++    +  + E   GA+    V         +D  +
Sbjct: 10  SSPSTRVLIVDDHELARAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVDLVMMDLQM 69

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +                 +   V       +         Y        
Sbjct: 70  PVIDGIEATRRIKALHPAIG--------IIMVTVQAKPDALMEALRAGVAGYLLKDASRR 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +      +  D +  +  L                    LT RE + L  + 
Sbjct: 122 EIIGAVRQVLRGEAFLNPDLV--LQTLRRLAHATPTDDATPIEP---LTPREQQVLRLLM 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ EIA  L IS  TV  ++  I+ K     R+ A   A+   +V
Sbjct: 177 QGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 224


>gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 220

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       +  + ++     +             G      V         +D  
Sbjct: 2   IRVLIVDDQMMVREGFSVLLGAMPDIEVVGEA-----VNGREAVAQVAALRPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  R +  ++             L    F              + +       
Sbjct: 57  MPELNGIDATREIVAAD--------ADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    A              +  ELT RE E L  I
Sbjct: 109 RQLADGVRVVAAGEALLAPTVTKRLITEFAKAPGSSPRPPAMA-QIGELTERETEVLVLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ I+ K A + R+ A  +A    +V
Sbjct: 168 AQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEAGLV 216


>gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 233

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 15/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDL 86
           +  ++++ +D        + A  E        +        + L     +++ SD     
Sbjct: 3   EAPSKILLVDDEPGLRESVQAYLEDSDFE-VRVASNAQEGWELLQQEIPNVLISDIMMPQ 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V      ++ +     Q    +F        + I       + Y    FD   +   +  
Sbjct: 62  VDGYQFLKQVREDARFQALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTS 121

Query: 147 LFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVH--------WGKDFELTGREVECLTW 196
           L  +      D     +I  +A     +                G   + T RE + L  
Sbjct: 122 LIERRAAQAPDASATPDIATMARQIEEIKALLTQRGSMIKQNNSGIKIDFTPREQDVLNL 181

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG  + EIA  LG +   V  Y++ +  KT T +R+  + YA+ N +V
Sbjct: 182 VAEGLMNKEIASRLGTTVRNVEKYVSRLFGKTGTNSRTELVRYALENGLV 231


>gi|331266987|ref|YP_004326617.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683659|emb|CBZ01277.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 210

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   GA    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGAQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGARGYMLKTSSADELLNAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHIELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 215

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 17/220 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA               +D  +     
Sbjct: 9   RVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEAVERTAELAPDVVLMDLKMPRVDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +                 L    F      +         Y     D   +   
Sbjct: 69  IEALRLLRERGS--------AARVLIVTSFTEHRTMVPALRAGAAGYVYKDVDPEALAGA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +                  G+   LT RE E L+ I++G+++
Sbjct: 121 IRSVHAGHVLLQPELAAALLAEDV--------PAPPQGRGGNLTEREREVLSHIADGRSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S  TV  ++++I+ K     R+ A  +AVRN
Sbjct: 173 REIARTLHLSEKTVKTHVSNILMKLDVADRTQAALWAVRN 212


>gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis 8013]
 gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria
           meningitidis alpha710]
 gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis
           N1568]
          Length = 218

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKSLLSRQHDFEVIGEAADGLSGIKMINRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDNDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|163738954|ref|ZP_02146367.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis BS107]
 gi|163741802|ref|ZP_02149192.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis 2.10]
 gi|161384975|gb|EDQ09354.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis 2.10]
 gi|161387759|gb|EDQ12115.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter
           gallaeciensis BS107]
          Length = 239

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 31  DLLARMIPLDCTVS-WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           DL+  ++    +V      +  + +     H +    D   +          +    V  
Sbjct: 8   DLILEVLDATTSVDGLQEIIQRVCDTFDVDHAMYHWVDSAGDHY----HFGTYSQGWVER 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLTFDVA 138
                  +   V+    + F PV     +           +       +  Y        
Sbjct: 64  YQEKAYVRVDPVIIGCYQRFHPVDWRRLDWSSKPAREFLQDALAHDVGNQGYSIPIRGPN 123

Query: 139 RIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVE 192
                  +                  ++ L+  Y       ++     +    L+ RE++
Sbjct: 124 GQFALFTVSHNCDDDTWTRFTDKHSRDLILIGHYFNRKALEFEPDRSPEHVQPLSPREID 183

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT ++ G +  ++A  L IS +T+  YI S   K      + AIA A+   ++
Sbjct: 184 ALTLLAMGYSRAQVAKTLTISEHTLRVYIESARFKLGAINTTHAIARALSLGLI 237


>gi|134103124|ref|YP_001108785.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003933|ref|ZP_06561906.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915747|emb|CAM05860.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 223

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 73/240 (30%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + L  +     + V          A +      V       ++ E         +  
Sbjct: 9   PVRVFLVDDHALFRTGVR---------AELATAADQVEVVGEAGSVAEA-----IAGIGH 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R +   + D           L   V     + I    G 
Sbjct: 55  YQPEVVLLDVHMPDGGGAEVLRQVRGKQPD--------VVFLALSVSDAAEDVIAVIRGG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y + T     +   +  +     +         G +    A    S  V   +   L
Sbjct: 107 ARGYVTKTISGRELADAVCRVAAGDPVFSP---RLAGFVLDAFAEGPNSAPVGDPELDLL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A    +V
Sbjct: 164 TPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWATDRRLV 223


>gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
 gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus
           clausii KSM-K16]
          Length = 215

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     S  S +      +  +      +     +                  
Sbjct: 1   MKIVIADDHAVVRSGFSMILNYQPDMEVVATAADGLEAYAMVAR---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++           +  +   K  +       +   ++              
Sbjct: 45  ----HRPDVLLMDLSMPPGESGLIATG--KISSEFPDTKIIILTMYDDEDYLFHVLKNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FE 185
             Y         +   +  +   G  I         +  +      K       +D    
Sbjct: 99  AGYVLKNAPDDELLSAIRTVHSGGTYIHP------QMATSLVREFIKKDSERAEQDLFNG 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L  I++G  + EIA  L +S  TV  + A IM K   K+R   + YA++  +
Sbjct: 153 LSQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKLNLKSRPELVEYALKKKL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129]
 gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae]
 gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae]
          Length = 233

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 65/225 (28%), Gaps = 14/225 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D           +     +    E   G                +D  +      + 
Sbjct: 6   LVDDQQLVRAGFRMVLDSQSDITVAWEANDGKEALENAANTPVDVILMDVQMPVMDGLEA 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            + +  +  D           +    F +    +       + +         +   +  
Sbjct: 66  TKRIVATNTD--------TRIIVLTTFDSENYVVGAVEHGASGFLLKDTAPEDLIAAVRT 117

Query: 147 LFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGK 201
           +  +  +I       +   +  +              +      LT RE E L  I+ GK
Sbjct: 118 VGEQSAVISPAATAVLFKSMRGHAPQTDLVATPGGDINAGLIDPLTPREQEILLLIALGK 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L IS  TV  +++ ++ KT ++ R  A+ +A    +V
Sbjct: 178 SNTEIAEELFISLPTVKTHVSKVLSKTGSRDRVHAVLFAFSRGLV 222


>gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica
           ST-640]
 gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria
           lactamica 020-06]
          Length = 218

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHDFEVIGEAADGLSGIKMINRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyces roseosporus NRRL 15998]
 gi|291346329|gb|EFE73233.1| two-component system [Streptomyces roseosporus NRRL 15998]
          Length = 207

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 66/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L    L     +D  +     
Sbjct: 4   RVLLADDHPVVREGLRGMLDAEADLDVVGEADSGPRAEALCAELLPDIVLMDLRMPGGGG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +  +              +    + +  + +       + Y         +   
Sbjct: 64  VESIRRIRAAGLP--------CRVVVLTTYESDSDILRAVEAGASGYLLKDLGRGELADA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++          +A    +  +           L+ RE + L  ++EG T+
Sbjct: 116 IRAAARGETVLAP-------TVATRLVDRLRGVPELP----RLSERETQVLRLVAEGCTN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L I  +TV  ++  I  K     R+ A+  A+R+ ++
Sbjct: 165 AEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 207


>gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 212

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 57/215 (26%), Gaps = 14/215 (6%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                +     +  + E   G +              +D  +      D    +      
Sbjct: 2   GFRMVLDAEPGIEVVGEAADGRAAVQRTGELAPDIVLMDVRMPGMDGIDATAEIVARH-- 59

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F              + +         +   +  +      I  
Sbjct: 60  ------PATRVIVLTTFDLDEYAFAGLRAGASGFLVKDTRPEHLMEAIRAVADGDAAISP 113

Query: 157 DRLWEIGLLAA-----YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                +  L                     +   LT RE+E LT ++EG T+ EIA  L 
Sbjct: 114 RVTRRMIELLGPTMPATGGAAGTGEGAADPRLRPLTARELEVLTALAEGLTNQEIAGRLF 173

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S +TV  ++  ++ K   + R  A+  A    +V
Sbjct: 174 LSESTVKTHVGRVLAKLEVRDRVQAVILAYDCGLV 208


>gi|159897838|ref|YP_001544085.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890877|gb|ABX03957.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 206

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 69/229 (30%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + L  ++      S      A     G     L +        LD  
Sbjct: 2   IRILVVDDHPVVREGLVAILSTQADFSVVGEASA-----GLQAVELCQQLQPDLVLLDLE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       ++  + L+  ++          L    F T    I         Y       
Sbjct: 57  LPDLDGVAVLERLDLAATNR--------RVLVFTAFDTDERIIGAVRAGAQGYLLKGAPR 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L+   G  +               A+             ELT RE E L  +
Sbjct: 109 DELFAAIRLIHAGGSTLHP-----------LIASKLLRQVQRDTTLVELTPREHEVLQHL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + +IA  L I+  TV  ++ SI +K     R+ A+A A    ++
Sbjct: 158 AQGFANKQIAYQLNITERTVKFHLNSIFQKLGAHNRTEAVAIAYERQLI 206


>gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 15/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + + R   V       +  + ++     +S            G      V         
Sbjct: 2   SDTDIRVLIVDDQMMVREGFSVLLNAMPGISVVGEA-----VDGRQALAQVTALRPDVVL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +   +             L    F              + +   
Sbjct: 57  MDIRMPEMNGIEATREIVARD--------AEAKVLVLTTFDLDEYVYQALRAGASGFLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                ++  G+ ++     ++       +    +  A   +       +  +LT RE E 
Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRP--PALARIGDLTERETEV 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 167 LVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH
           DNA-binding domain [Streptomyces venezuelae ATCC 10712]
          Length = 237

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +V+  + E   S  + +      +  +       +    +               
Sbjct: 1   MTTIRVVVADDQELVRSGFAMILDAQPDIEVVAEAGDGAAAVEAVRR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +  R +                 +    F T         
Sbjct: 48  --HAPDVALLDIRMPGTDGIEACRTIGAES---------GCRTVILTTFDTDAYVYEALH 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         +   + ++     ++       +                   +  
Sbjct: 97  AGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRL---VEQYTAGGPRRTAPDPRLD 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E L  ++ G ++ EIA  L +S +TV  ++ +++ K   + R  A+  A    
Sbjct: 154 VLTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|298369040|ref|ZP_06980358.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298283043|gb|EFI24530.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 218

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 72/237 (30%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +                    G +   LV   
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQSDFEVIGEAAD---------------GFTGIKLVEQM 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +  S   +        T +   V     +         
Sbjct: 48  RPDIVLLDLDMPVMNGRETLAQILSSNPQQ--------TVVMLTVSEDNDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
             +     +   +   +        +   +    +        ++              L
Sbjct: 100 RGFLLKNINADFLLDSIRKAVDGDNVFSPEMTTRL------VQSLISPASPRADHLLSTL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE+E L +++ G ++  IA  L ++ +T+  ++ +I+RK    +R  A  YAV++
Sbjct: 154 TPREMEILGYLAAGHSNKVIARHLELAESTIKVHVQNILRKLNLSSRVQAAVYAVQH 210


>gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 216

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 66/226 (29%), Gaps = 18/226 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   D +AR    +            T   G S   + R        +D  + 
Sbjct: 5   VMIVDDHPIWRDGVAR-DLAEHDFDV-----KATAPDGESAIRIARAVRPDVVLMDINLG 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D  R +           L     L         + +       + Y   +  VA 
Sbjct: 59  DTSGVDATRAITNE--------LPDTRVLVLSASGEHNDVLQAVKAGASGYLVKSASVAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        +        +  +   +                LT RE E L  +++
Sbjct: 111 LVDAVRRTAEGDPVF----TAGLAGMVLGEYRRMADSPDMGDPPPRLTERETEVLRLVAK 166

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+ +IA  L IS  TV N++ S +RK     R     YA+ + +
Sbjct: 167 GLTAKQIADRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 212


>gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 237

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 71/235 (30%), Gaps = 13/235 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D    +       +    + A    +G  + +          + D  +  + P 
Sbjct: 2   DLTILHDCFDALQRAPTAEAAFPPIAAAAAALGFRYCVYGLRRTLPLARPDLQIVGNHPR 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------ITPPAGMDNRYCSLTFD 136
           +               +++R      PV     +              GM   +    +D
Sbjct: 62  EWEHRYVKFGYVTIDPIIKRVASQPRPVVWNAFDEPGDTAFWHDAACFGMRYGWSHGGYD 121

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-----FKSYDVHWGKDFELTGREV 191
            A     L L+     +   +        A+           +  D        LT RE 
Sbjct: 122 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLAHAAHAYLMPRLADPIAPVGTGLTLRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EI +I GI+  TV  ++ + + K     ++ A   A    ++
Sbjct: 182 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236


>gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 237

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 73/235 (31%), Gaps = 13/235 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D    +       +    + A    +G  + +          + D  +  + P 
Sbjct: 2   DLTILHDCFDALQRAPTAEAAFPPIAAAAAALGFRYCVYGLRRTLPLARPDMQIVGNHPR 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--------ITPPAGMDNRYCSLTFD 136
           +               +++R      PV     +              GM   +    +D
Sbjct: 62  EWEHRYVKFGYVTIDPIIKRVASQPRPVVWNAFDEPGDTAFWHDAACFGMRYGWSHGGYD 121

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAA-----YQANMFKSYDVHWGKDFELTGREV 191
            A     L L+     +   +        A+     +   M +  D        LT RE 
Sbjct: 122 RAGNLGVLTLVRDTTPLDADEISRLRAPCASLSHAAHAYLMPRLADPIAPVGTGLTLRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W ++GKT+ EI +I GI+  TV  ++ + + K     ++ A   A    ++
Sbjct: 182 EVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236


>gi|330467467|ref|YP_004405210.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810438|gb|AEB44610.1| LuxR family two component transcriptional regulator [Verrucosispora
           maris AB-18-032]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 24/246 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     Q+ ++L  +++   S    L    D +  +              +         
Sbjct: 1   MITAESQIKVLLADDEKLVRSGFKLLLDLEDDITVVGEATDGAEAVEAARS--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D +V       L   +  + +      L+R   L    + T     
Sbjct: 52  -----------ARPDVVVMDIRMPKL-DGIQATTQISRMRGLERVRILILTTYDTDANVF 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +       A +   + ++     ++       +            +     
Sbjct: 100 DALQAGASGFLLKDAGPAELLHAIRVVAAGDALLAPRITRRLI---GQFTARRTAAGAAQ 156

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E L  +  G  +DEI   L +S  T   +++  M K   + R+  +  A
Sbjct: 157 ERLAVLTDREREVLALVGRGLNNDEIGGELFLSPATARTHVSRAMAKLGARDRAQLVVIA 216

Query: 241 VRNNIV 246
            +  +V
Sbjct: 217 YQTGLV 222


>gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
 gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator
           [Streptomyces sp. SPB78]
          Length = 274

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 21/236 (8%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+++++  ++    + +S +      +      D           L             
Sbjct: 56  EQISVLVVDDEPIIRAGLSAILDSQADITVAGTADDGEEAVEACARL------------- 102

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +        +  +             R   L    F          A 
Sbjct: 103 --RPDVLLMDIRMPRRDGLWALAELGRRGLLGQ----GRSRVLMLTTFDLDAYVDDALAA 156

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +         +       I  +  + +   +  D    +  +
Sbjct: 157 GASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRI--IEGHLSGRRQPSDQELARLGD 214

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A 
Sbjct: 215 LTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 270


>gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 69/221 (31%), Gaps = 10/221 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF------QEQKLDSIVSSDWPFD 85
           +  R++  D          AL +       +    D        +E + D ++       
Sbjct: 1   MTVRIVIADDQDVVRAGFGALLDTQPDLSVVGSAADGAAAVGVCRETRPDVVLMDVRMPV 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L    A           + P  +    F          A   + +        R+   + 
Sbjct: 61  LDGIEATRRIIAGAGAGRGPRIVMLTTFDLDEYVYDALAAGASGFLLKDMTAERLFEAVR 120

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++     ++       +           + +         LT RE E L  I+EG ++ E
Sbjct: 121 VVAAGDALLAPTVTRRLIGE----FVRLRPHTAEPSPLALLTPRETEVLRLIAEGLSNAE 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV  +++ ++ K   + R+ A+  A    +V
Sbjct: 177 IAARLTVSAETVKTHVSRVLAKLGARDRAQAVMLAYEFGLV 217


>gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 6/223 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G            Q++  D ++     
Sbjct: 6   RILLCEDQTLMRQGLRTILELEPGIQVVGEAGDGEEAVGQYASLRHQDKGPDVVLMDIEM 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +    A +   +      + + +    F                Y         +   
Sbjct: 66  PRMNGVQATAAIVQSDP---QASIIILTTFDYEDYVFDAVKAGAMGYLLKDVPANELMAT 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     I      ++  L  +      +      ++  L+ RE+E L  ++EG ++
Sbjct: 123 IRQVYSGVPSIQPKIASKL--LVEFGRKERSATPARPAQEETLSPREIEILKLLAEGASN 180

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L ++  TV N++++I+ K  T  R+ A   A    ++
Sbjct: 181 RKIAEQLVLAEGTVKNHVSNILSKLHTGNRTQAAHLARERKLL 223


>gi|225871059|ref|YP_002747006.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225700463|emb|CAW94880.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 213

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E     +         +  +                    G     L 
Sbjct: 1   MSNITVILVDDHEMVRMGLKSFLNLQQDVDVIGEASN---------------GREGVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LELRPDVVVMDLVMPELGGVEATLEILSKW--------KEARVLVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D       
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVAKGELAIETE-----------VDKKIKAHDQQPNLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 18/215 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-------LDSIVSSDWPF 84
           +L  +  ++    +   +    +     H  +      +E          D ++      
Sbjct: 1   MLTTVAIVEDNRDFRATLARYVDEAP-GHRCICECGTSEEALQKLPRLMPDVVLMDIHLP 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +          +    +Q        V+                Y     D A I   +
Sbjct: 60  QMSGLDCTRRLKEICPSIQIL---ILTVYEDNERIFGALKAGAGGYLLKRADPADILSAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +          +A      F+       K+ +L+ RE E L  +S+G T+ 
Sbjct: 117 QDVKQGGAPMSS-------QIARRVVQSFREVPREPVKNEKLSQREEEILQQLSKGYTTK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L +S NTV  ++  I  K   ++R+ A+  
Sbjct: 170 EIAERLSVSVNTVRTHLQHIYEKLHVRSRTEAVVK 204


>gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 213

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + + +  + E   + +     R D +  +           R+ AL            
Sbjct: 1   MKTIRVFILDDHEIVRNGLRQTLDRHDDIEVVGEAGLAAEAIRRIPALL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D+ R +  +  D    +L          +       +   
Sbjct: 50  ----PNVAVLDGRLPDGSGIDVCRDIRSAHPDVACLIL--------TSYDDDEALFSAIM 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +   G ++                +  +          
Sbjct: 98  AGAAGYVLKEIRGNDLVSAIRTVAAGGSLLSPSVTRR-------VLDRMRQGPREDPTLA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE E L  I+EG T+ +I   + +S  TV NY++SI+ K    +R+ A  YA++ 
Sbjct: 151 SLSAREREILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGMTSRTQAAVYALKK 209


>gi|158315190|ref|YP_001507698.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158110595|gb|ABW12792.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 58/223 (26%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   G       R        +D  +     
Sbjct: 4   RVLLADDQTLLRATFRILIDSCSDMEVVGEAADGHEAVAATREHRPDVVVMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F              + +         +   
Sbjct: 64  LAATAAI------CGDETLAATRVLILTTFEIDEYVAQALRVGASGFLGKDVGTDELLSA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +            +  V+      LT RE E +  ++EG ++
Sbjct: 118 IRTVAGGDALLSPAATRVLISRFLATPEPAATATVNPVALAALTAREREVMALVAEGYSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  T   ++   M K   + R+  +  A ++ ++
Sbjct: 178 HEIADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQSGLL 220


>gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       +  + ++     +             G      V         +D  
Sbjct: 3   IRVLIVDDQIMVREGFSVLLNAMPDIEVVGEA-----VNGREAVSKVAELAPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  R +  ++             L    F              + +       
Sbjct: 58  MPELNGIDATREIVAADG--------GAKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    +  +   +       +  +LT RE E L  I
Sbjct: 110 RQLADGVRVVAAGEALLAPTVTRRLITEFSKLSETPRP--AAMTQVADLTERETEVLVLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ ++ K   + R+ A  +A    +V
Sbjct: 168 AQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLV 216


>gi|256784749|ref|ZP_05523180.1| two-component response regulator [Streptomyces lividans TK24]
          Length = 216

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 16/227 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + +  ++ L   V             G     +V         +D  + 
Sbjct: 1   MVVVDDQTVVREGIVMLLGLLPGVDVVGAAG-----DGEEAVRVVAELAPDVVLMDLRMP 55

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +                 +    +                Y +       
Sbjct: 56  RCDGVEATRRIRSEHPGTQ--------VVVLTTYADDESLFPALHAGARGYLTKDAGGDE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +      +       +     + +               LT RE E L  I+E
Sbjct: 108 IVRAVHSVLSGDAGLAPSIQRRL---LEWLSESEPRPTGPPEPPDGLTTRETEVLVLIAE 164

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ +IA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 165 GLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 211


>gi|291560732|emb|CBL39532.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [butyrate-producing bacterium
           SSC/2]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +    + +               +                 D
Sbjct: 2   IKVMIADDQELIRQSLQIVLEMKEGIEVTATAKDGREVIQEVRK---------------D 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +        Y  ++    +    F              
Sbjct: 47  KPDVILMDVRMPEMDGVQCTQIIKEQ-----YPDVKI---IILTTFDDDEYVYNALKHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +   G +I  +   ++    +  A       +H     E+T
Sbjct: 99  SGYLLKGISMDELEKAINTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E E +  +  G ++ EI+  L +S  TV NY+++I+ K   + R+    + V++ 
Sbjct: 159 DAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQLAIWEVQSG 215


>gi|297154246|gb|ADI03958.1| putative two-component regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 10/226 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   + +     +  T  +  + E   GA    L          +D  +   
Sbjct: 1   MTTVLIADDQPLQRMGFRMLMEGTPGLSPIGEAEHGAEAVRLAEQLRPDVVLMDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGLEATRRIVAAGG--------RTRVLIVTTFDLDEYAYEGLRAGASGFLLKDARPEELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            G+  +     ++       +    A        ++     +   L+ RE E L  I +G
Sbjct: 113 AGIHAVATGDAVVAPSLTRRLLDAYAHRVLAPADAHAPADPRLRTLSDREREVLVAIGQG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L ++ +TV  ++  ++ K   + R  A+  A    +V
Sbjct: 173 WTNTEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMAYDAGLV 218


>gi|54025090|ref|YP_119332.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016598|dbj|BAD57968.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  + E     +  +      +  +   +       R   L              
Sbjct: 2   PITVLVVDDQELMRMGLKMVLGAHPDIEVIGEAENGAVAVSRAREL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  S              L    F      +      
Sbjct: 48  -RPDVVLMDVRMPVVDGVTATTRILESG--------DGCKVLVMTTFDLDEHVLGALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +  +     ++       +  L    A+           D  L
Sbjct: 99  ASGFLLKDTPPEDLVSAVRSVAAGDAVVSPKVTKRL--LDRLIADDPAGMRDAAVLDV-L 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+ G+++ EIA  L +S  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 156 TAREREVLEQIAAGRSNAEIAAELFLSEATVKTHVGRVLTKLGLRDRVQAVVLAYETGLV 215


>gi|297203494|ref|ZP_06920891.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714467|gb|EDY58501.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 236

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 12/235 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
              S  + +    D           V     +  + E   GA    + R +      +D 
Sbjct: 1   MTASAATRILIAEDQALLSGSFRVLVDSEPDLTTVGEASTGAQAVAMARSERPDVVLMDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +                 L   +F              + +      
Sbjct: 61  RMPELDGIEATRRI------CGSPATAGVRVLILTMFDIDEYVFDGLRAGASGFLLKDTP 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREV 191
            A +   + ++     ++       +      +                     +T RE 
Sbjct: 115 PADLLTAIRVIAGGDALLAPAVTRRLIAEFCRRPEARPEGRLDGLASAPRGLDGVTDRER 174

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I+ G ++ EI+  L +S  TV  ++  ++ K   + R+  +  A  + +V
Sbjct: 175 EVLLLIAGGLSNTEISNRLHLSHGTVKTHVGRLLAKLEARDRAQLVIAAYESGLV 229


>gi|254382674|ref|ZP_04998032.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194341577|gb|EDX22543.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 233

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 66/226 (29%), Gaps = 10/226 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA  + L R        +D  +     
Sbjct: 9   RVLLADDQALLRSAFKVLVDSESDMEVVGEASDGAQAYALARERGADVVLMDIRMPGTDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     +   +   
Sbjct: 69  LAATRMISA------DPELAGVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPEELLNA 122

Query: 144 LMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           + +      ++       +    L    +     +   H  +   LT RE E L  ++ G
Sbjct: 123 IRVAAAGEALLSPAATKGLIATFLAQGGREERAAATGAHAQQLAALTVREREVLVHVAAG 182

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 183 LSNDGIAGRLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 228


>gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 236

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                V   P     + +++ LD                G+   +           LD  
Sbjct: 32  HTIMIVDDHPLMRRGIKQLLELDSNFDVVAEAN-----CGSDAIIEAAKCQPDVILLDLN 86

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D ++ +     D           +   V     +         + Y     + 
Sbjct: 87  MKGMSGLDTLKALRNEGID--------ARIIVLTVSDARSDVYAMIDAGADGYLLKDSEP 138

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L      +                     S D       ELT RE++ L  +
Sbjct: 139 EILLENIRLASKGENVFSDAVT-----------QYLSSRDEQVNPFSELTERELDVLQEV 187

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 188 ARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 233


>gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 238

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 65/229 (28%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            ++   C  S   +       +G  +F                    +P +       ++
Sbjct: 12  EILSATCKKSLFEQTAYHVRQLGFKNFAY--RHQIAGMSSSRCTLDGFPAEWRLRYDSAD 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGL 144
                 V+Q       P+  +             +     G+         D       L
Sbjct: 70  YLSIDPVVQHCRCRTVPLIWSDDLYTTGRAKIMRDEAKSYGLVYGLSCPVHDRGGTISML 129

Query: 145 MLLFPK-------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +             + L      +               +      +LT RE E L W 
Sbjct: 130 SMATDAPFERDTIDVLRLLSLSQLLASFVHAAMQELLDCRLRRQGSCDLTARERESLQWA 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 190 GRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238


>gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 65/225 (28%), Gaps = 12/225 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     +     +     +  + E   G +              +D  + +   
Sbjct: 3   RVLLVDDHALIRVGFRLVLESAGDIEVVGEAGDGRTALEQAAALRPDVVLMDVRMPNLNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +  +              L    F              + +         +   
Sbjct: 63  IDATARLVEAR--------PEARVLILTTFDLDEYAFAALRAGASGFLLKDVAPVDLIGA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEG 200
           +  +     ++       +  L A++          D    +  +LT RE+E L  I+  
Sbjct: 115 VRTVAGGEAVVSPRITRRMLELFAHRLPESGEVPRSDAVHPRLADLTPRELEVLRHIAGA 174

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++ EIA  L +S  TV  ++A ++ K   + R  A+  A    +
Sbjct: 175 RSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVLAYETGL 219


>gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
 gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria
           polysaccharea ATCC 43768]
          Length = 218

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 28/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G S   ++   
Sbjct: 3   IKIILIDDHTLFRSGIKALLLRQHDFEVIGEASD---------------GLSGIKMISQL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   + +   +   +        +   +   ++  + +  +               LT
Sbjct: 100 RGYLLKSINADFLLESIRKAADGDNVFSPEMTAKL--VRSLISPQPAQGTQALSS---LT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+ +N
Sbjct: 155 PREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHHN 211


>gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C]
 gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    +  + E V G      V         +D  +     
Sbjct: 4   RVLIVDDQMMVREGFSVLLNAMEGIEVVGEAVDGRQAIAQVAALGPDVVLMDIRMPEMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  ++ D           L    F              + +        ++  G
Sbjct: 64  LEATRQIVAADTD--------AKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLAEG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    +  +++ ++ D       ELT RE E L  I++G ++
Sbjct: 116 VRVVAAGEALLAPSVTKRLISEFSKLSDVQRAADP--SGVSELTERETEVLVLIAQGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++ +T+  +++ I+ K   + R+ A  YA    +V
Sbjct: 174 GEIADRLLVAESTIKTHVSRILVKLGLRDRTQAAVYAYETRLV 216


>gi|251793298|ref|YP_003008026.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534693|gb|ACS97939.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           aphrophilus NJ8700]
          Length = 209

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  +       +  L    +    +                    G+    L  
Sbjct: 3   DKLKVLIIDDHPLMRRGIKQLVELEEGFEVVGGAGN---------------GSEGINLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +     D           +   V     +  T    
Sbjct: 48  QTSPDLIILDLNMKGLSGLDTLKALRAEGVD--------ARIVILTVSDAKSDIFTLIDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   L  +     I+                N+           + 
Sbjct: 100 GADGYLLKDTEPDTLLSQLKRIAQGEVILSDS-----------IKNLLIERQSSQEPIYS 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A      +
Sbjct: 149 LTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEH 206


>gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 237

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 71/227 (31%), Gaps = 11/227 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D       L   ++    +  + E   G     +    L     +D  +   
Sbjct: 15  VIRVLIVDDHALYRRGLQTVLATEDGIEIVGEAADGNEAVDVAEEVLPDVIVMDVGMPKR 74

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +           +     +                   N Y         + 
Sbjct: 75  GGIEACRVIKQR--------VPSARIIMLTSSDDEENLFEAVRAGANGYLLKDVPPEEVA 126

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISE 199
            G+  +F    +I      ++    A  +    +      +     LT RE+  L  ++ 
Sbjct: 127 AGIRGVFHGQSLISPMMASKLLQEFAQMSRHEGTVPAATPELELPRLTERELGILRLVAR 186

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+ + EIA  L IS NTV N+I +I+ K    +R  A  YAVR  ++
Sbjct: 187 GRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMYAVRKRLI 233


>gi|218437173|ref|YP_002375502.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169901|gb|ACK68634.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 80/251 (31%), Gaps = 27/251 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + L  + +     +                   + W           G     L+
Sbjct: 1   MNKIRVALIEDHDLTRVGLRTALKNY----------SEIDWLGEAGN-----GRDGLQLL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +  L     +D  +      +L +     ++    ++ +        +  T  E +   A
Sbjct: 46  QNTLPDVAIVDIGLPDLDGIELTKLFKDFQEQNPNSLTKIL---ILTLHDTEAEVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------LAAYQANMFKSYDV 178
              + YC     +  +   +   +     +       +        L   + N   S + 
Sbjct: 103 AGADSYCMKNISIDLLLEAIKATYEGNSWLDPAIARIVISQVQTPNLKTEKGNNPASVEA 162

Query: 179 HWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +  E   LT RE+E L  I +G ++  IA  L I+  TV  ++ +I+ K     R+ 
Sbjct: 163 ENNQSVENYSLTDRELEVLQLIVDGYSNAAIADQLFITVGTVKTHVRNILNKLCADDRTQ 222

Query: 236 AIAYAVRNNIV 246
           A   A+R  +V
Sbjct: 223 AAVRALRAGLV 233


>gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 9/231 (3%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
           E  TS    +    D           +     ++ + E   G     + R        +D
Sbjct: 4   EPATSRAIRVLLADDQHLVRTGFRVILEVEDDIHVVGEAADGERAVSMARALRPDVVLMD 63

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +           +   T      F              + +     
Sbjct: 64  VEMPRVDGLEATRRIVADVDRPNGPAVLILTT-----FDRDDYLFAALRAGASGFLLKNG 118

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     +I  +    +    A  A              ELT RE E L 
Sbjct: 119 TPEALVAAIRVVARGDGLIAPELTRRVI---AAFAGPGGEPTTTAVALPELTPREHEVLV 175

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G  + EIA  L +   TV  +++ ++ K   + R  A+ +A  + +V
Sbjct: 176 LVASGANNAEIAAALRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 226


>gi|154486803|ref|ZP_02028210.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis
           L2-32]
 gi|154084666|gb|EDN83711.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis
           L2-32]
          Length = 245

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 72/248 (29%), Gaps = 24/248 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   Q + I +  + E   + V            +  L        +     +  G   
Sbjct: 20  MNEREQGIRIAVVDDHEMFRAGV------------IATLQPYFDVVGQA---ADVEG--S 62

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             ++         LD  V           +  S       V    +    P      +  
Sbjct: 63  VAMIAQTKPDVVLLDVHVPGGENGGGTEILTKSRTYSPDTVFLALSVSDSP-----QDVG 117

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVH 179
           +        Y + T     +   +  ++    +       + +       +         
Sbjct: 118 SVIRAGAQGYVTKTISGDDLVSSIKQVYEGYAVFSPKLAGFVLSAFQNGPSANGAFGGPI 177

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + + L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     RS    
Sbjct: 178 HDDELDRLSNREQEVMRLIARGYTYKEVASELFISIKTVETHMSSVLRKLQLSNRSELTR 237

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 238 WAADRRIV 245


>gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri]
          Length = 232

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           EGK+S +I+ ILG S+ TV  ++ +   K  T  R
Sbjct: 198 EGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232


>gi|297537662|ref|YP_003673431.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257009|gb|ADI28854.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           QR   V         L+ MI  D  V             G     L          +D  
Sbjct: 5   QRIVIVEDHTLLRQGLSAMISADPDVEVVGEADN-----GRDAIRLAGSLSPNLMLMDLS 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  +                 L   V               + Y      +
Sbjct: 60  MPGTNGTESILEIKRRYPKI--------KVLVLTVHKAEEYVREALKAGADGYVLKHATL 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A + + +  +      +  D      +++ Y                 +T RE E L  I
Sbjct: 112 AELMVAIKSVLRGKTYLSPDVAE--QVVSGYLFGG--KGPNQTSTWDSITLREREVLKLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG  +  IA  L +S  T+  + +++M+K      +    +A+   ++
Sbjct: 168 AEGHPNKFIANYLCVSVKTIEKHRSNLMKKLDMHNAASLAVFAIEKGLI 216


>gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 208

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 38/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +          +      +  +                    GA    L   
Sbjct: 4   KIPVLLADDHALVRRGFRLMLEDDPEIEIVAEAGD---------------GAQAVKLAGE 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   +D  +      D  + +        +  +         +              
Sbjct: 49  LHPRVVVMDCAMPGMSGMDATKQIRTQ-----WPDIAVLM---LTMHSEDTWVRLALEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N Y   +     +   +  +     ++                   +   +   K   L
Sbjct: 101 ANGYILKSAIDLDLIQAVRRVANGETVLDP---------------KVEKPTLKGNKSMGL 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I  GK++ EIA  L +S NTV+ + A+IM        +  + YA++N +V
Sbjct: 146 TNRELEILQLIVSGKSNKEIASDLSLSVNTVSVHRANIMEGLGIHNTAELVVYAIKNGLV 205


>gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
 gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia
           pestis KIM D27]
          Length = 240

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +          A+TE              
Sbjct: 6   TILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSD------AITEAAKFQ--------- 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +  +  D           +   V     +         +
Sbjct: 51  PDVILLDLNMKGMSGLDTLKALRHNGSD--------ARIIILTVSDARSDVYAMIDAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +   + +               S         ELT 
Sbjct: 103 GYLLKDCEPEILLENIRQAARGENVFSDEVI-----------QYLSSRHEQVNPFSELTE 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 152 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 206


>gi|126730312|ref|ZP_01746123.1| autoinducer-binding transcriptional regulator LuxR [Sagittula
           stellata E-37]
 gi|126709045|gb|EBA08100.1| autoinducer-binding transcriptional regulator LuxR [Sagittula
           stellata E-37]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 21/228 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D      + +  L +  G  H +    +   EQ         +  + V        
Sbjct: 1   MESADGLEDLQLLIEELRDEYGVDHIVYHWVNSAGEQYG----CGTYDLEWVNHYIEKGY 56

Query: 96  DKYYNVLQRPTELFCPVFHTLPE----------NITPPAG-MDNRYCSLTFDVARIRIGL 144
            +   V+Q   + F PV     +                G  +  Y              
Sbjct: 57  LRIDPVIQGCYQRFHPVNWKRLDWSSKSARAFLEDAIGHGIGNQGYSIPIRGPNGQFALF 116

Query: 145 MLLFP----KGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWIS 198
            +       +          ++ L+A    +                L+ RE+E +T ++
Sbjct: 117 TMSHSCNDDEWEAFTISNRRDLILVAHSFNSKALEFEPGRTPEPAQPLSPREIEAMTLLA 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +  + A  L IS +T+  Y+ S   K      + A+A A+   ++
Sbjct: 177 IGYSRAQAADTLSISEHTLRVYVESARHKLGAMNTTHAVAQALSRGVI 224


>gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 251

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 73/251 (29%), Gaps = 25/251 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +VL  + +     +     +   +  +            +  +            
Sbjct: 16  MKKIRVVLIEDHDLTRIGLRTSLQQCADIELLAEAANGADGLRLLEEI------------ 63

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R +   +         +   L   +       +   A
Sbjct: 64  ---HPDLAIVDIGLPELDGIELTRILKQEKLKDQS-HEAQTKVLILTLQDDDAAVLAAFA 119

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW---------EIGLLAAYQANMFKS 175
              + YC        +   +         I               E    +         
Sbjct: 120 AGADSYCMKDITFDHLVEAVKTTDSGNSWIDPAIARIVLNQVQGGEPLSGSTVTIQATSP 179

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D    +   LT RE+E L  I +G ++ EIA  L I+  TV  ++ +I+ K     R+ 
Sbjct: 180 EDQQLLESCPLTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCADDRTQ 239

Query: 236 AIAYAVRNNIV 246
           A   A+R+ +V
Sbjct: 240 AAVRALRSGLV 250


>gi|51892059|ref|YP_074750.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855748|dbj|BAD39906.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 74/248 (29%), Gaps = 29/248 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +       + +L + S  +  +      V     +  L            
Sbjct: 1   MSPIRVLLVDDHAILREGIRYLLSASGEVEVIGEAQDGVEALEMVEKL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  + +     D           L   ++ +    +    
Sbjct: 49  ---RPDAVLMDIAMPRMNGIEATKELKKRHPD--------LPVLILSMYDSEEYVLPILR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN------MFKSYDV 178
                Y         +   L  +     I+  D    +      Q +        +    
Sbjct: 98  AGAAGYVLKRAAAQELVSALKAVTSGQVILHPDVARTVMDNLQAQESPQGPPVAPRGASE 157

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  +LT RE E LT I+ G T+ +IA  L IS  TV  + A++M K           
Sbjct: 158 AQAQLAQLTEREREVLTLIAHGLTNQQIAERLFISIKTVQAHRANLMEKLDLHDAVELTK 217

Query: 239 YAVRNNIV 246
           +A+++ ++
Sbjct: 218 FAIKSGLL 225


>gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response
           regulator [Neisseria meningitidis 053442]
 gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Neisseria meningitidis 053442]
 gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria
           meningitidis alpha275]
          Length = 218

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +      +S    +  L               
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQHDFEVIGEAADGLSGIKMINRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +      +          +   V     +         
Sbjct: 48  QPDVVLLDLDMPGMNGREALSQIISINPQQ--------AVIMLTVSEDNDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +   +        +   +   ++   L++   A   ++          
Sbjct: 100 RGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSS------- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YA+R+N
Sbjct: 153 LTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHN 211


>gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator
           [uncultured proteobacterium QS1]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 22/225 (9%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
            +     +      +G  ++        +  K   I+ S++P D +          Y  V
Sbjct: 1   MLELAPSLENALSCLGEFNYSYYVVRKSKNTKP--IIVSNYPDDWLMLYEARSYHLYDPV 58

Query: 102 LQRPTELFCPVFHTLPENITPPAGM------------DNRYCSLTFDVARIRIGLMLL-F 148
           +      F P      +                     + +  +  D A +   L +   
Sbjct: 59  INYGMRRFAPFSWCDAQASDTADIGKELFQSAEKYQISSGFTFVLHDAAELFASLSVCRS 118

Query: 149 PKGRIILRDRL---WEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGK 201
            +G    +       EI +      +   S              L+ RE+E L W+ +GK
Sbjct: 119 GRGSDFGQRVADHSAEIQMALINFHDHILSTQTVDELFPLPANLLSAREIEILQWVGKGK 178

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              E+A+I  IS +TV  +I+ I  K        A+  A+R  I+
Sbjct: 179 AYFEVAIICAISEHTVKFHISKISTKLNVLNAKQAVYEAIRRGII 223


>gi|329939465|ref|ZP_08288801.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301694|gb|EGG45588.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 65/240 (27%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E   +    +      +  +      V+    + A               
Sbjct: 2   PIRVMLVDDQELLRTGFRMVLAAQPDMEVVAEAGDGVAALQALRATA------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +              P  L    F       +     
Sbjct: 49  --VDVVLMDVRMPKLDGVEATRRICAQP----DP----PKVLILTTFDLDEYAFSGLKAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +  +     ++       + L          +          L
Sbjct: 99  ASGFMLKDVPPGELLAAIRSVHSGDAVVAPSTTRRL-LDRFAPMLPDTNQRPRHEGLERL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E +  +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 158 TEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
 gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus
           ureae ATCC 25976]
          Length = 209

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 61/238 (25%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +   I+L  +       +  +    D    +                    G     L  
Sbjct: 3   EPYKILLIDDHPLMRQGMRQILELEDNFVVIGEASN---------------GTDGIALAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D +R +     D           +   V     +       
Sbjct: 48  GKDPDLIILDLNMKGISGLDTLRSLRTHGVD--------SRIIVLTVSDEQSDIFALMDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     D A +   +        ++                               
Sbjct: 100 GVDGYLLKDSDTADLVENIRKAAKGEMVLSET-----------VQQHLLDRRPENDPLSV 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L WI+ G ++ +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 149 LTDRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206


>gi|239930359|ref|ZP_04687312.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438712|ref|ZP_06578102.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341607|gb|EFE68563.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 12/228 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +     M  L E   G     +          +D  +   
Sbjct: 1   MTTVLIADDQPLQRFGFRMLLESQDDMTVLGEAANGTEAIRMTAELHPDVVLMDIRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGIEATRRIVATG--------DRTRVLILTTFDLDEYAYAGLRAGASGFLVKDVRPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELTGREVECLTWIS 198
            G+  +     ++       +    A+     +  +       +   LT RE E LT I 
Sbjct: 113 SGIRAVATGDAVVAPSLTRRLLDAYAHHLPVGDTEEKPTSDDPRLSALTEREREILTVIG 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T+ EIA    ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 173 KGWTNTEIATRFHLAESTVKTHVGRILAKTGSRDRIQAVILAYDAKLV 220


>gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 76/240 (31%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V+++L  ++E     +  +      +  +                    G+    L+R 
Sbjct: 28  PVSVLLVDDEELVRVGLRVILESGGEIDVVGEASD---------------GSQVVPLIRE 72

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +        +R +          V   P  L    F             
Sbjct: 73  NTPDVVIMDIRMPRVDGLAAIREILAD-------VADPPKILVLTTFELDDYVYEALRSG 125

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N +       A I   +  +     ++  + +  +                   +   L
Sbjct: 126 ANGFLLKRARPAEIVQAVRTIVSSESLLFPEAIRYMA------GKRPNREAHETMRRAVL 179

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ISEG +++EIA  L +   TV ++++S++ K   + R+ A+  A  +  V
Sbjct: 180 TDREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGFV 239


>gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae L20]
 gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 209

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 24/222 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     + +++ L+                G     +          LD  +   
Sbjct: 9   LIDDHPLMRQGIRQILELEDNFVIVGEASN-----GTDGISIALDTNPDLIILDLNMKGI 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +R +     D           +   V     +         + Y     D A + 
Sbjct: 64  SGLDTLRALRKHGID--------SRIVVLTVSDEQSDVFALMDAGVDGYLLKDSDTAELV 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                               LT RE + L WI+ G 
Sbjct: 116 ENIRKAAQGETVLSDSVR-----------QHLLDRRPENDPLSVLTDRERDVLQWIATGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 165 SNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206


>gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 74/226 (32%), Gaps = 15/226 (6%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       +  ++     M  + E   G     L          +D  +      +
Sbjct: 2   LIIDDHPLFRQGIRWSLDDAPDMEVVGEAENGQEAIKLTERLSPDVVLVDINLPGLNGLE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + R +      +    +     +   V+    +           Y S   +   +   + 
Sbjct: 62  VARVI-----KRRDPRIGI---IVLSVYEDDDQLFQAIKVGAAAYSSKDVNPEDLLYYIR 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEG 200
            +     +I    L +   +A    + F+       +        LT RE+E L  I+ G
Sbjct: 114 TVATGRYLINDSVLAK-PNVATRVLHQFRELAATEDEQTSVLFAPLTSREIEILDCIARG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA++   V
Sbjct: 173 LSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIYAIKRGWV 218


>gi|225025132|ref|ZP_03714324.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
 gi|224942093|gb|EEG23302.1| hypothetical protein EIKCOROL_02024 [Eikenella corrodens ATCC
           23834]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 79/241 (32%), Gaps = 30/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ IVL  +     S +  L  R +    +                    G S   LV 
Sbjct: 3   EKIRIVLIDDHTLFRSGIKALLARQENYEVVGEAAD---------------GLSGVKLVS 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +  S  ++          +   V       +     
Sbjct: 48  QLAPDVVLLDLDMPVMNGREALAQILSSRPEQ--------KVVMLTVSEDGENLVECMRL 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-F 184
               +     +   +   +        +   +      ++A    ++ +           
Sbjct: 100 GACGFLLKNINANFLIDAIGKAANGDNVFSPE------MMACMVQSLIRPAQPATESALD 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L +++ G ++  IA  + ++ +TV  ++ +I+RK    +R  A  YAV++N
Sbjct: 154 TLTSRELEVLRYLAVGYSNKIIAKRMDLAESTVKVHVQNILRKLELGSRVQAAVYAVQHN 213

Query: 245 I 245
           +
Sbjct: 214 L 214


>gi|302552866|ref|ZP_07305208.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470484|gb|EFL33577.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   GA    L R        +D  +     
Sbjct: 4   RVLLADDQALLRATFRILIDSCADMEVVAEASDGAEAVELTRVHRPDIVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F T            + +         +  G
Sbjct: 64  LAATAALCA------DPELSSTRVLILTTFETEDYVAQALRAGASGFLGKDVTADTLLAG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++       +                   +  +LT RE E +   +EG+++
Sbjct: 118 LRTVASGESLLSPVATRSLITRFLLAPAPGTHL-APPERLADLTVREREVMALAAEGRSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  +I   M K   + R+  +  A +  +V
Sbjct: 177 TEIAEDLTLSPLTVRTHIHRAMTKLNARDRAQLVVIAYQTGLV 219


>gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 537

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 12/233 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQK 73
           +  +      S+   R+  +D        ++ +       + VG +       +L    K
Sbjct: 310 SCVLPKQVQLSNKQIRLCIVDDHSFIRESLHTILSGLEDLQVVGMAEDGEQALELCGRLK 369

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D ++      +L    A     K +  ++         F              + Y   
Sbjct: 370 PDVVLMDLEMPNLDGIHATKMIKKRWPEIRVLILST---FQNTERAKEIIRNGADGYVLK 426

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           + D   +   + L++  G +I  D    +              D     ++ LT RE+E 
Sbjct: 427 SIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGI---EYGLTKRELEI 483

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A    ++
Sbjct: 484 LELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGLL 536


>gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 15/228 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLV----RWDLFQEQKLDSIVSSDWPFDLV 87
           + +R++ +D        + A  E    +  +       W+L Q+   D +++     + V
Sbjct: 18  IPSRLLLVDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQNLPDLVITDIMMPE-V 76

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 ++ +   + +    +F        + I       + Y S  FD   + + +  L
Sbjct: 77  DGYQFLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVIVKNL 136

Query: 148 FPKGRII---LRDRLWEIGLLAAYQA---NMFKSYDVHWGKD----FELTGREVECLTWI 197
             +  +      D   +I  LA   A   NM K              +LT RE   L  +
Sbjct: 137 LERRAVATASSSDGNPDIAALAGQIARIENMLKGKSGITPTPPPIKIDLTPREQSVLDLV 196

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 197 AQGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244


>gi|328885551|emb|CCA58790.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 249

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            + +  ++ L   V             G     L          +D  +      +  R 
Sbjct: 34  REGIVMLLGLLPGVEVVGAAR-----DGEEAVALTAELAPDVVLMDLRMPRCDGVEATRR 88

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +            +           +L             Y +       I   L  +  
Sbjct: 89  IRERH-----PGTEIVVLTTYGDDDSLF---PALRAGARGYLTKDAGGEEIVRALRDVTD 140

Query: 150 KGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +       +       A  Q +   +          LT RE E L  +++G ++ E
Sbjct: 141 GRAGLSPAVQRRLLDQLVEGAGRQESPVAAEGAAASSGDGLTERETEVLVLVADGLSNQE 200

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV  +I ++  KT  + R+ A+ YA ++ +V
Sbjct: 201 IAGRLRISTATVKTHINNLFAKTGVRDRAQAVRYAYQHGLV 241


>gi|307704250|ref|ZP_07641169.1| response regulator [Streptococcus mitis SK597]
 gi|307622161|gb|EFO01179.1| response regulator [Streptococcus mitis SK597]
          Length = 210

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G     L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGFQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGARGYMLKTSRADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVATGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus
           lugdunensis HKU09-01]
 gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 209

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    L  +           +   L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQPDLEVVGEGASGKEAIAKAQEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           +     +    F    E         
Sbjct: 48  KPDLILMDLLMEDMDGVEATTQIKKE--------MPHIKVVMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     I   +   +    +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSAKDIAEAVRKTYHGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 15/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            E   R   V       +  + ++     +             G      V         
Sbjct: 2   SESTIRVLIVDDQMMVREGFSVLLNAMPGIEVVGEA-----VDGRQAVSQVAALRPDVVL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +  ++             L    F              + +   
Sbjct: 57  MDIRMPELNGIEATREIVAAD--------ADAKVLVLTTFDLDEYVYQALRAGASGFLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                ++  G+ ++     ++       +    +  A   +       +  +LT RE E 
Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKIATAPRP--PAMARIGDLTERETEV 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 167 LVLIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
 gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
          Length = 218

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 58/226 (25%), Gaps = 15/226 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R             L  ++     +             G     + R         D  +
Sbjct: 4   RVVVADDQLLVRTGLTMILNAQPGIEVVGEA-----TDGHEAVDVARRLRPDVCLFDIRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +A    +    ++          F                +        
Sbjct: 59  PGIDGVEATRRLAGPGVEDPLAIV------IITTFDLDEYVHGALKAGARGFLLKDAGPE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +        +I  D    +           +           LT RE E L  ++
Sbjct: 113 LLVQAIHAAANGDALISPDITRRLLT----TLAGLERATPPAQPIEPLTEREEEVLLTVA 168

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            G+T+ EIA  L I+ +TV  ++A++M K   + R     +A    
Sbjct: 169 RGRTNAEIADELHITLSTVKTHVAALMNKLGARNRVEVAMWAYETG 214


>gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
 gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10394]
 gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10270]
 gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS2096]
 gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes
           MGAS10750]
          Length = 215

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 73/244 (29%), Gaps = 34/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             + ++ ++L  + E     +         +  +                    G     
Sbjct: 1   MTMSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASN---------------GREGVD 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D ++      +    +            +    L    +    +    
Sbjct: 46  LALALKPDVLVMDLVMPELGGVEATLEVLKKW--------KEAKVLVLTSYLDNEKIYPV 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T   A I   +  +      I  +                K++D H   
Sbjct: 98  IDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETE-----------VDKKIKAHDQHPDL 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R
Sbjct: 147 HEELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 206

Query: 243 NNIV 246
           +++V
Sbjct: 207 HHLV 210


>gi|302540802|ref|ZP_07293144.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458420|gb|EFL21513.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 221

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 62/223 (27%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    +  + E   G      VR        +D  +     
Sbjct: 3   RVLLADDQILVRAGFRALLAAQPDIDVVAEAADGEQALKGVREHRPDVVLMDIRMPLLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     +    F           G  + +     +   +   
Sbjct: 63  LAATRRITE------DPALAEVKVVMLTTFELDEYVFEAIRGGASGFLVKDTEPEELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +               ELT RE E +  +  G ++
Sbjct: 117 VRAVVDGDALLSPGVTRRL----IAEFAARSKEPAPASVLAELTEREREVMALVGIGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 173 EEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|291303040|ref|YP_003514318.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572260|gb|ADD45225.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++      V  + T    +  +                    G     L R  
Sbjct: 2   IRVLLADDENMVREGVKSILTTDAGIEVVAEAGN---------------GREAVELARAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +  +              +    F              
Sbjct: 47  RPDVALIDIRMPVLDGLGALAELRQAAPATRC--------VMLTTFDEDEFIARALDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     D   + IG+  +      +       +  +A +  +          K  ELT
Sbjct: 99  AGFLLKASDPRELIIGVRAVADGAAYLSPRVAGRV--IAEFDTDRLTRGTGAQRKVAELT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+ G ++ EI   L ++  TV  ++++I+++   + R  A     +  +
Sbjct: 157 PRENEVLGLIASGLSNQEIGRRLHLTEGTVKAHVSAILQRLGVRNRVEAAIIGYQAGL 214


>gi|149190820|ref|ZP_01869085.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148835382|gb|EDL52354.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 211

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 22/231 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           + + R   V       +     +  +  +         T   G     +V+  L     +
Sbjct: 2   DAKIRVVIVDDHQVVLEGFMARLEREPEIDVV-----ATASNGVEAIEVVKSTLPDVVLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  + +     +           L   +       +         Y    
Sbjct: 57  DVSMPIMNGIESTQVLKEELPNI--------RVLMLTMHDNREYIMKVMQAGAVGYMLKE 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 109 ISAEKMVQAIKTVHQGSTYFCESVTQTL---------FSQEITPVVAKSNPLSRREESVL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+ N +
Sbjct: 160 KLVAQGCSSKKIAQMLDISYRTVETHRQNIKHKLDLHSTAELAKYALENGL 210


>gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4]
 gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 214

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  + E     +S        +  +      +        L               
Sbjct: 6   VKVLLVDDHEMVRMGMSAFLQTQPDIEVIGQASNGLEGVEMTKRL--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +   +             +    F    +         
Sbjct: 51  EPDVIVMDLVMEKMDGIEATRAIMKDK--------PLSKVIVLTSFIDDEKVYPVIEAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +        ++      ++        N  +S       + ELT
Sbjct: 103 FSYLLKTSSAKEIAQAIRQAADGEPVLASKVTNKM-------MNHMRSQKEKALHE-ELT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I  G+++ EIA  L I   TV  ++++I++K A + R+    YA R+ +V
Sbjct: 155 PRELEVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHRHGLV 213


>gi|213692561|ref|YP_002323147.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524022|gb|ACJ52769.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458713|dbj|BAJ69334.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 289

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 67/291 (23%), Gaps = 61/291 (20%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N     R              A +I     +    +        GA    L        
Sbjct: 4   MNESRSIRVIIADDQELVRAGFAMVIGSQPDMEVVGQA-----SDGAQAVALAESLHPDV 58

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL-------QRPTELFCPVFHTLPENITPPA 124
             +D  +      +    +           +       +    +    F      +    
Sbjct: 59  VLMDVRMPGMDGIEATSRITSLSAAPGDATVSAESADDRPTRVIILTTFDLDEYVMAAIN 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD--------RLWEIGLLAAYQANMFKSY 176
              + +     +   +   +  +F    II            + +               
Sbjct: 119 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMQDGYAQHGSLTGDVARS 178

Query: 177 DVHWGKDFE-----------------------------------------LTGREVECLT 195
              +                                              LT RE E L 
Sbjct: 179 GAVYSSAVGVSGGAAGNGAGSMTGIPSPAGAASDGSNTSRPAYTDPELDLLTDREREVLV 238

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +V
Sbjct: 239 EIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGLV 289


>gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 221

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    L   +      LD  +     
Sbjct: 3   RVLLADDQALVRAGFRALLDSAPDISVVAEAATGAEAVRLAVAERPDIALLDIRMPELDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     +    F              + +     +   +  G
Sbjct: 63  LAAAERILA------DPRLSSTRVVILTTFDLDEYIFEALRLGASGFLVKDTEPEDLING 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A Y     +       +D  LT RE E +  + EG ++
Sbjct: 117 VRVVARGEALLSPSVTRRV--IAEYAGRPRRPAPDRRLRD--LTDREREVVALVGEGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  TV  +++  M K   + R+  +  A    +V
Sbjct: 173 EEIAARLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETGLV 215


>gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 213

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 63/222 (28%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L    +       L E  G      L          +D  + +    
Sbjct: 8   LLIVDDHPVVRDGLRGMFASDPGFSVLGEAAGGVEGVELALHLDPDVILMDLRMPAGSGV 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +  +             R   L    + T  + I         Y         +   +
Sbjct: 68  EAIAELTRRG--------ARAKVLVLTTYDTDSDTIPAIEAGATGYLLKDAPRDELFTAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++    +  +              +        L+ RE E L  +++G ++ 
Sbjct: 120 RAAAEGRTVLSPAVVSRLV---------GAVRNPATPTVEVLSAREREVLELVAKGTSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++  + RK   K R+ A+A A    I+
Sbjct: 171 EIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGIL 212


>gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 221

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 16/220 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D L     L   +     +  + +  +       ++  L     +D ++      + 
Sbjct: 8   LVDDHLVVRQGLRDFLELQDDIEVVGDSGMPVEAVGQIKQLLPDVVIMDLVMPEIDGVEA 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +          V      +    F    +           Y         +   +  
Sbjct: 68  TRRVKA--------VSPTTQVIVLTSFSDDEKVFPAIKAGAISYLLKDVSPLELARAVRS 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 ++  +   ++          F +   +      LT RE++ L  I+ G ++ EI
Sbjct: 120 AKRGEAVLHPEVAAKL-------MQEFSAPRNNDPDAEALTEREMDVLRLIARGHSNREI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++++I+ K     R+ A  YA+R  +V
Sbjct: 173 ADSLIISEKTVKTHVSNILSKLHLADRTQAAIYALRQRLV 212


>gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 221

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 61/231 (26%), Gaps = 14/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R   V       + L  ++ L   V    +        G     ++         +D
Sbjct: 4   EPIRVLVVDDQQLVREGLTALLELTEDVEVVGQA-----AHGREALDILTRKPCDVVLMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         R +                 L    +                Y +   
Sbjct: 59  LRMPVLDGVAATREIRNRH--------PEVAVLVLTTYSDDDSIRDALGAGAQGYLTKDA 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   L                 +      Q                LT RE E L 
Sbjct: 111 GRAEIHAALRAAVTGQATFTTAVSRRLVTALTEQRPRPSE-PTPDPSATTLTAREREILG 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I  G ++ EIA  L I+ +TV  +I +   K   + R+GA+ YA +  +V
Sbjct: 170 LIGAGLSNAEIAARLFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQTGLV 220


>gi|225076056|ref|ZP_03719255.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241758839|ref|ZP_04756952.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
 gi|224952616|gb|EEG33825.1| hypothetical protein NEIFLAOT_01088 [Neisseria flavescens
           NRL30031/H210]
 gi|241321047|gb|EER57260.1| transcriptional regulatory protein DegU [Neisseria flavescens
           SK114]
          Length = 218

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 71/237 (29%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +     S +  L +R      +      ++    +  L               
Sbjct: 3   IKITLIDDHTLFRSGIKALLSRQPDFEVVGEASDGLAGVKMVEQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +             + T +   V     +         
Sbjct: 48  KPDVVLLDLDMPVMNGREALAQILSIN--------PQLTVIMLTVSEDSDDLTECMRMGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             +     +   +   +        +   +    +        ++            E L
Sbjct: 100 KGFLLKNINADFLLESIRKAVDGDNVFSPEMTSRL------VQSLISPSPSRSDHLLEQL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++
Sbjct: 154 TPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|319638279|ref|ZP_07993042.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
 gi|317400552|gb|EFV81210.1| LuxR family Transcriptional regulator [Neisseria mucosa C102]
          Length = 218

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +     S +  L +R      +      ++    +  L               
Sbjct: 3   IKITLIDDHTLFRSGIKALLSRQPDFEVVGEASDGLAGVKMVEQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +             + T +   V     +         
Sbjct: 48  KPDVVLLDLDMPVMNGREALAQILSIN--------PQLTVIMLTVSEDSDDLTECMRMGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
             +     +   +   +        +   +    +        ++             +L
Sbjct: 100 KGFLLKNINADFLLESIRKAVDGDNVFSPEMTSRL------VQSLISPSPSRSDHLLAQL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++
Sbjct: 154 TPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
 gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1]
          Length = 215

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 31/244 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              ++  ++L  +     + +  L    + L  +                    G     
Sbjct: 1   MTAEKFTLLLIDDHPMLRNGLKQLIALDERLQVVAEAGN---------------GIDGLA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L +        LD  +      D +  +          +      +   V     + ++ 
Sbjct: 46  LAQQHDPDLILLDLNMPGLNGLDTLTQLRE--------IALSGRVVVFSVSDNEEDVVSA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   L        ++       +           +       +
Sbjct: 98  LKRGADGYLLKDMEPEALLKALHQAAAGQIVLSEALTPIL-------VARLRESQPAQTR 150

Query: 183 DF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D  +LT RE + L  IS+G T+  IA  L IS +TV  ++  +++K   K+R  A  +A+
Sbjct: 151 DISQLTRRERDILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKINLKSRLEAAVWAL 210

Query: 242 RNNI 245
           +N +
Sbjct: 211 QNGL 214


>gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 217

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    D +  +      V    ++                  
Sbjct: 1   MKIVIADDHAVVRTGFSMILNFQDDMEVVDTAADGVEAYQKVME---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D ++           +  +   K  +       L   ++              
Sbjct: 45  ----HKPDVLIMDLSMPPGESGLIATS--KIADSFPETKILILTMYDDEEYLFHVLRNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++ + +  ++     +  D      L+  +                 L+
Sbjct: 99  KGYILKNAPDEQLILAVRTVYQGEMYV--DMKLTTSLVNEFVNQPQYDTGTTNDPFKILS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 157 KRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKSKPELVEYALKKKLL 215


>gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 223

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G     ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMDVVAEAGNGVEALEVLRSTAVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F       +      + +         +   
Sbjct: 64  VETTRRICAD----TDP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       + L                 +   LTGRE E +  +++G ++
Sbjct: 116 IRAVHSGDAVVAPSTTRRL-LDRFAPMLPGTGKQDGHQELERLTGREREVMVLVAQGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 175 GEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|306828929|ref|ZP_07462121.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304429107|gb|EFM32195.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 210

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGSQGIELALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 RKVASGELAIEQEVSKKVEYHRNHIELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|256789340|ref|ZP_05527771.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289773226|ref|ZP_06532604.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289703425|gb|EFD70854.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    L      +  +            +  L               
Sbjct: 2   IRVLLADDQSLVRAGFRALLDAQPDIEVVAEAADGEEAVRSIREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                    +V  D    L+  +A + +      L     +    F              
Sbjct: 47  ------RPDVVLMDIRMPLLDGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   +  +     ++       +      +           G+   LT
Sbjct: 101 SGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRL----IAEFAARSKEPAAPGEMARLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 157 EREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 221

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 11/217 (5%)

Query: 36  MIPLDCTVSWTMRMYALT----EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  +D        +  +     E  G S       D   +   D +++      L     
Sbjct: 8   IFLVDDHAILREGLKMILSGQFEICGESGDAEKALDQIGKLNPDLVITDISMPGLSGIDL 67

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           +    K Y  ++    +                   N Y         +   +  +    
Sbjct: 68  VKNLRKQYPNIR---TIILSRHDNREYVQKLLELGINGYVLKDDAGNDLLRAIEAVHKGE 124

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVI 209
             +          L+ +  +     +    K     L+ RE E L  ++EG +++ I  I
Sbjct: 125 TYLSPGITA--HFLSGFVGSGKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKI 182

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LGIS  TV  + A+IM+K      +  + YA+R  ++
Sbjct: 183 LGISPATVKVHRANIMKKLNLHKVADLVMYAIRAGLI 219


>gi|111023439|ref|YP_706411.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822969|gb|ABG98253.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 216

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 10/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           ++    +  + +   G      VR        +D  +      D  
Sbjct: 4   ADDQAMVRQGFGALLASQPDISVIGDAPDGVVAVSEVRRLRPDVVLMDVRMPEMNGLDAA 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +  +        ++         F          +   + +         +   + ++
Sbjct: 64  RIILSAGF---DPPVRVLM---LTTFDVDDYVYEALSIGASGFMLKDAPAEELIRAVRVV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++       +    A   +   +          LT RE E L  I+ G ++ EIA
Sbjct: 118 ADGEALLAPTVTRRLI---ADVTSRRSTARRKPAALSALTPREREVLELIARGMSNTEIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 175 ERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 213


>gi|305680025|ref|ZP_07402835.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305660645|gb|EFM50142.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 232

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 19/240 (7%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  + +   +  S +    D +  +   +                G    +L +   
Sbjct: 3   TVGLADDQQLVRAGFSMVLGSQDDIEVVWEANN---------------GREAVMLAQRQP 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      D  + +            +    +    F T    +       +
Sbjct: 48  VDVILMDIQMPVVNGIDATKEIVAQRLRG--PAGELTRIVVLTTFDTDNYVVQSIEAGAS 105

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFEL 186
            +         +   +  +     +I       +               V   +     L
Sbjct: 106 GFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLRTHMAPTVDPMVALNRGLVEPL 165

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++ R  A+ YA    ++
Sbjct: 166 THREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFDRGVI 225


>gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
 gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13]
          Length = 238

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 13  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 72

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 73  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 132

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 133 RTGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 193 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 57/222 (25%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L            L E   G     L          +D  +      
Sbjct: 19  VLVVDDHPVVRDGLRGMFESAPGFRVLGEAANGTEAVELTAALDPDVVLMDLRMPGGGGV 78

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +             R   L    + T  + +         Y         +   +
Sbjct: 79  EAIRELTRRA--------ARAKVLVLTTYDTDSDTLPAIEAGATGYLLKDAPREELFTAV 130

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +                       L+ RE E L  ++ G  + 
Sbjct: 131 RAAAEGRTVLSPAVASRLVTAVR---------SPRTPGSEPLSAREREVLALVARGTANR 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 182 EIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 223


>gi|297195058|ref|ZP_06912456.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721552|gb|EDY65460.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 223

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 59/230 (25%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P     L  ++     +             G     L          +D 
Sbjct: 5   PVRVLLVDDQPLVRAGLRVLVADSPGLEIAGEAGT-----GEQAVRLAEDVRPDVVVMDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +                 L    F              + +     D
Sbjct: 60  RMPGMDGIEATGRITAGPST--------ARVLVLTTFDDDEYVYGALRAGASGFLVKDMD 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  I   + ++     +I       +  +  + A               +T RE E LT 
Sbjct: 112 LDDILAAVRVVAAGDALIAPSVTRRL--IEEFAARPKPPATPPHPAIDGVTDREREVLTL 169

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I  G ++ EIA  L IS  T   ++  +  K A + R   +  A    +V
Sbjct: 170 IGRGLSNGEIADRLCISPATAKAHVGRLFTKLAARDRVQLVIIAYELGLV 219


>gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus CNRZ1066]
 gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
 gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like
           receiver and HTH DNA-binding domains), putative
           [Streptococcus thermophilus ND03]
          Length = 214

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 78/240 (32%), Gaps = 34/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++N++L  + E     +         +  +   +                G     L   
Sbjct: 4   KINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAEN---------------GREGVDLALE 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +L    A  E  K +   +         +    +        
Sbjct: 49  LRPDVVVMDLVMP-----ELDGVQATLELLKEWPEAKIL---VLTSYLDNEKIYPVIEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T   A I   +  ++     I  +             N  K +D H     +L
Sbjct: 101 AKGYMLKTSSAAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPNLHDDL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 150 TARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|328881870|emb|CCA55109.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 229

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 68/243 (27%), Gaps = 25/243 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S    L      +  +                    GA    L R +
Sbjct: 3   IRVLLADDQALLRSAFKVLVNSEPDMEVVGEAAD---------------GAQAVALARSE 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +           L     +    F      +       
Sbjct: 48  RADVVLMDIRMPGTDGLAATRMITA------DPELSDVRIVMLTTFEVDEYVVQSLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY----QANMFKSYDVHWGKD 183
           + +     +   +   + +      ++       +             + ++      + 
Sbjct: 102 SGFLGKGAEPEELLGAIRIAHAGEALLSPAATKGLIATFLAQGPGAEAVGEAGRARSERL 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A  +
Sbjct: 162 AALTAREREVLVLVAGGLSNDEIAERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYES 221

Query: 244 NIV 246
            +V
Sbjct: 222 GLV 224


>gi|288920973|ref|ZP_06415266.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288347607|gb|EFC81891.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 226

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 56/223 (25%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   G    +  R        +D  +     
Sbjct: 4   RVLLADDQALLRATFRILIDSCDDMTVVAEAANGNEAVVATREHRPDVVVMDIRMPGMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F              + +     +   +   
Sbjct: 64  LAATAAI------CRDEELAATRVLILTTFEIDEYVARALRVGASGFLGKDVEADGLLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +            +          LT RE E +   +EG ++
Sbjct: 118 VRTVAAGEALLSPAATRALIAQFVAIPEPTATAAASHAALDTLTAREREVMILAAEGHSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  T   ++   M K   + R+  +  A +  ++
Sbjct: 178 QEIAAKLVISPLTARTHVHRAMAKLDARDRAQLVVIAYQTGLL 220


>gi|21222522|ref|NP_628301.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256786408|ref|ZP_05524839.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8052435|emb|CAB92376.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 222

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 66/243 (27%), Gaps = 27/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +   +      L    D +  +               L               
Sbjct: 2   TTVLIADDQPLQRFGFRMLLESQDDMTVVGEAANGAEAARMAAEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +             R   L    F       +      
Sbjct: 47  HPDVVLMDVRMPGLDGIEATRRIVAGGG--------RSRVLILTTFDLDEYAYSGLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY----QANMFKSYDVHWGKD 183
           + +         +  G+  +     ++       +     +          +      + 
Sbjct: 99  SGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPAAGTRDHTPGSPDPRL 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  + +G T+ EIA  L ++ +TV  ++  I+ KT ++ R  A+  A   
Sbjct: 159 SPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKTGSRDRVQAVILAYET 218

Query: 244 NIV 246
            +V
Sbjct: 219 KLV 221


>gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14]
 gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112]
 gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 237

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLLA +            +      +   +        +   +      S++P    R
Sbjct: 5   AEDLLAGLDSARSEEEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWKR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI 140
               +       +L        PV                    G+   +   +FD    
Sbjct: 65  RYVEAGFLDVDPILAHGRRSQQPVVLAETLFASAHQMWVEAQSFGLRFGWAQSSFDAYGG 124

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+     +   +      R+  +   A           +    +  LT REVE L
Sbjct: 125 MGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 185 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 236


>gi|17232908|ref|NP_489446.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134898|dbj|BAB77454.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 237

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 75/254 (29%), Gaps = 30/254 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +VL  + +     +     + D +  +       S    + +             
Sbjct: 1   MNKIRVVLIEDHDLTRIGLRATLQKLDGIEVIGDARDAASGLKLLKST------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L +    S   +     +        +  +    +   A
Sbjct: 49  ---QPDIAIVDVGLPDMSGIELTQHFFNSMDAQQTPQTKIL---IMTMQDSEDTVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-------EIGLLAAY-----QANM 172
              + YC       ++   L L       I             +    A         N 
Sbjct: 103 AGADSYCMKDASTDKLVEALHLTVNGNSWIDPVIARIVLQQTQKATTAANARPDTVAING 162

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                 H  + + LT RE++ L  I +G ++  IA  L +S  TV  ++ +I+ K     
Sbjct: 163 LSPEYSHIVETYPLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSD 222

Query: 233 RSGAIAYAVRNNIV 246
           R+     A+R  +V
Sbjct: 223 RTQIAVRALRAGLV 236


>gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 217

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G      V         +D  +     
Sbjct: 3   RIVLADDHALFRQGLRSLLEAEPDFRVVGEAGDGREALRHVLEAKPDIVLMDIQMPGLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +             +   +   ++                Y     D   +   
Sbjct: 63  VQATQEILREW--------PQAKVIMLTMYRQDAYVFEAVKAGARGYMLKDADAKDLLEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   +I        +     +       EL+ REV+ L  +++G T+
Sbjct: 115 IRRVNNGEVLLDAELAEQI------IQDFKAKRESVPKPHAELSEREVQILKLVAQGYTN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV N ++ I +K     R+ A  YA+R  +
Sbjct: 169 LEIAGELSLSEKTVRNRLSEIFQKLHLNNRTQAALYALREGL 210


>gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 230

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 32/242 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ ++L  + E     ++ +    + +  +                    G     L +
Sbjct: 17  ERIKVLLVDDHEMVRIGLAAVLDTEEGIEVVGEASN---------------GYDGIRLAQ 61

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++      +  + +                 +    F    +       
Sbjct: 62  AYKPDIVLMDLVMDGMDGVETTQKLLEL--------YPECKVIVLTSFIDDSKLYPVIEA 113

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--D 183
               Y   T     I   +        ++           AA   N  +           
Sbjct: 114 GAFSYLLKTARATEIADAIRAAARGQSVLESQV-------AAKMMNRLRKPKQPVQAALH 166

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +++G ++ EIA  L I   TV  +I +I  K   + R+ A  YA + 
Sbjct: 167 DDLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHITNIFNKLDVEDRTQAAIYAHKQ 226

Query: 244 NI 245
            I
Sbjct: 227 GI 228


>gi|293605268|ref|ZP_06687654.1| nitrate/nitrite response regulator protein NarL [Achromobacter
           piechaudii ATCC 43553]
 gi|292816324|gb|EFF75419.1| nitrate/nitrite response regulator protein NarL [Achromobacter
           piechaudii ATCC 43553]
          Length = 221

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +     S V  L  R      +      V    R   L              
Sbjct: 2   PIRILLVDDHTLFRSGVRLLLQRQADFEIVAEAGDGVEAVKRAKEL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      + ++ +           L     +   V     E        
Sbjct: 48  -RPDVVLLDLNLPGLSGLETLQLLTQD--------LPSCAVIILTVSEEADELGQALRDG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +   +        +I      ++      QA++         +   L
Sbjct: 99  ARGYLVKNIDAEVLTSAIRRAAAGESVIAESMTAKLVDQFRGQASLAAQGKSPAERH-RL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE + +  ++ G ++  IA  L +S +TV  ++ ++++K    +R     YAV + +
Sbjct: 158 TARETQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGL 216


>gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium
           LMG 3301]
          Length = 238

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +       G +H   +         +  +     P +     A  + 
Sbjct: 13  MQSADDAGQLLEYINTYARQCGFAHTAYLMRIPLLNGVVKWLSFGSLPQEWTDHYADKKY 72

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDNRYCSLTFDVARIRIGLMLL 147
                ++++      P+  +       P         G+        +    +   L  L
Sbjct: 73  ADIDPLVRKALNSIEPLVWSSKLFAEAPQIWTDAQRFGIRVGISQPCWAAQGVFGMLSFL 132

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++  +A         +          +  LT RE E L W SEG
Sbjct: 133 RSGPALSSGEISMLRRQLQTVANMLHLAMYEHLDVPTMNCVSEVNLTMREREILRWTSEG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 193 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 247

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 14/224 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRCMALSEK 95
             +         M  L    G +HF++ R  L  EQ+  + +V S+WP +LV+     E 
Sbjct: 24  ASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGET 83

Query: 96  DKYYNVLQRPTELFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIGLML-------- 146
            +   +++R  +   PV                  +  L          ++L        
Sbjct: 84  FQTSELVERLRQTKLPVTGGPELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPF 143

Query: 147 ---LFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKT 202
              L              + L          +++D   G   +L+ REVECL W + GK+
Sbjct: 144 VAVLSGTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLRWAAAGKS 203

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SDEIA+ILGIS  TV++Y  S  RK     R  AIA A+R  ++
Sbjct: 204 SDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247


>gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 241

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLLA +            +      +   +        +   +      S++P    R
Sbjct: 9   AEDLLAGLDSARSEDEAFRSIETAATALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWKR 68

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
               +       +L        PV                    G+   +   +FD    
Sbjct: 69  RYVEAGFLDVDPILAHGRRSQQPVVLNETLFASSHQMWVEAQSFGLRFGWAQSSFDAYGG 128

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+  +  +   +      R+  +   A           +    +  LT REVE L
Sbjct: 129 MGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 189 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|261380927|ref|ZP_05985500.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
 gi|284796180|gb|EFC51527.1| nitrate/nitrite response regulator protein NarL [Neisseria subflava
           NJ9703]
          Length = 218

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +     S +  L +R      +      ++    +  L               
Sbjct: 3   IKITLIDDHTLFRSGIKALLSRQPDFEVVGEASDGLAGVKMVEQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +             + T +   V     +         
Sbjct: 48  KPDVVLLDLDMPVMNGREALAQILSIN--------PQLTVIMLTVSEDSDDLTECMRMGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
             +     +   +   +        +   +    +        ++             +L
Sbjct: 100 KGFLLKNINADFLLESIRKAVDGDNVFSPEMTSRL------VQSLISPSPSRSDHLLAQL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++
Sbjct: 154 TPREMEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210


>gi|21219585|ref|NP_625364.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|8744963|emb|CAB95289.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 221

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    L      +  +            +  L               
Sbjct: 2   IRVLLADDQSLVRAGFRALLDAQPDIEVVAEAADGEEAVRSIREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                    +V  D    L+  +A + +      L     +    F              
Sbjct: 47  ------RPDVVLMDIRMPLLDGLAATRRITGDPGLPDVRVVMLTTFELDEYVFEAIRSGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   +  +     ++       +      +  +        G+   LT
Sbjct: 101 SGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRL----IAEFAVRSKEPAAPGEMARLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 157 EREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|256822565|ref|YP_003146528.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256796104|gb|ACV26760.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 214

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 75/243 (30%), Gaps = 30/243 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +   ++I+L  +       V  L    D L  +   +       R   L          
Sbjct: 1   MKQNNISIMLVDDHPLLRKGVVQLIELEDNLEVVAEANNGEDAVKRALEL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      + ++ +  +          +   +   V     + +  
Sbjct: 51  -----DPDLIMLDLNMKGLNGVETLKAIKQTGV--------KAKVIMFTVSDAEADVLQA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   +        +I          L    A  F+        
Sbjct: 98  LKAGVDGYVLKDSEPEELIQYINKSMQGELVIS-------APLTQILAKSFRPKAEKEEF 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L +IS+G ++  IA  L I+ +TV  ++  +++K   K+R  A  +AV 
Sbjct: 151 LEALTNRETQILRYISQGDSNKVIARKLEIAESTVKVHVKHLLKKINLKSRIEAALFAVE 210

Query: 243 NNI 245
           N +
Sbjct: 211 NKL 213


>gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 219

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 15/227 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       +  + ++     +             G      V         +D  + 
Sbjct: 5   VMIVDDQMMVREGFSVLLNAMPDIEVVGEA-----VNGREAVTKVAELRPDVVLMDIRMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +A +              L    F              + +        +
Sbjct: 60  ELNGIEATREIAATH--------PEARVLVLTTFDLDEYVYQALRAGASGFLLKDASARQ 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  G+ ++     ++       +    +  A   +       +  ELT RE E L  I++
Sbjct: 112 LAEGVRVVASGEALLAPTVTRRLINEFSKLAQAPR--IASVAQLGELTERETEVLALIAQ 169

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 170 GLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 216


>gi|315180008|gb|ADT86922.1| transcriptional regulator [Vibrio furnissii NCTC 11218]
          Length = 212

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 58/222 (26%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +      +     +  +     G     +V+        +D  +      
Sbjct: 7   VVIVDDHRVVLEGFMARLEMEPEIEVIATASNGLEAIDVVKQHRPDVILMDVSMPIMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +           +     L   +       +         Y         +   +
Sbjct: 67  DATRLIKEE--------VPNAKVLMLTMHDNREYIMKVMQAGAVGYMLKEISAENMVQAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +              +           +       K   L+ RE   L  +++G +S 
Sbjct: 119 KTVNLGSTYFCESVTQTL---------FTQEVIPSAQKPNPLSRREEAVLKLVAQGHSSK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA +L IS  TV  +  +I  K    + +    YA +  ++
Sbjct: 170 KIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYASQRGLL 211


>gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia
           thailandensis E264]
 gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia thailandensis E264]
          Length = 425

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            ++   C  S   +       +G  +F                +   +P +       ++
Sbjct: 199 EILSATCKKSLFEQTAYHVRQLGFKNFAY--RHQISGAASSRCMLDGFPTEWRLRYDAAD 256

Query: 95  KDKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGL 144
                 V+Q       P+                +     G+         D +     L
Sbjct: 257 YLSIDPVVQHCRCRTVPLIWHDELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAISML 316

Query: 145 MLLFPK-------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +             + L      +        +      +      +LT RE E L W 
Sbjct: 317 SMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTARERESLQWA 376

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT+ EI+ ILGIS  TV  ++++  RK     R+ A+  A    ++
Sbjct: 377 GRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 425


>gi|108805307|ref|YP_645244.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766550|gb|ABG05432.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 229

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 12/227 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D           ++    +  + E   G     L R        +D  +    
Sbjct: 8   ARLIVADDHALVRGGFRAMLASEPDLQIVGEAENGRRAVELCRSLEPDLVLMDVRMPQMD 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +                 L      +            + Y        ++  
Sbjct: 68  GLQATRVIKAEH--------PATAVLMVTTHASDDYLFEAIKAGASGYVLKEATKQQLVD 119

Query: 143 GLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISE 199
            + +       I ++  +  +  LA        S       +    LT RE+E L  ++ 
Sbjct: 120 SIRVTLRGEPSINQELAIQLLRRLAREAHESANSPPAKRLPELCEPLTPREIEILRLLAR 179

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + +IA  L IS  TV  ++  I+ K     R+ A   A+   I+
Sbjct: 180 GLKNRQIAEHLVISPGTVKVHVQHIIAKLGVSDRTQAAVRAIELGIL 226


>gi|307330982|ref|ZP_07610113.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883368|gb|EFN14423.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 300

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 62/234 (26%), Gaps = 11/234 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
                 R              A ++     +    +        G     L R       
Sbjct: 73  GSAAPIRVLLADDQRLVRSAFAMLVSSARDMDVVGQAGT-----GREAVELARTARADLV 127

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +  R +A          L     L    + T    +       + +  
Sbjct: 128 VMDIRMPDLDGIEATRRIAA------DEDLAGVKVLVLTTYDTDEHIVEALRAGASGFLV 181

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                A +   +  +     ++       +        +              L+ RE +
Sbjct: 182 KDTRPAELLDAIRTVAAGESLLSPGPTARLIARVLRLPDAPPPGAPAPAALAALSERERQ 241

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G  + E A  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 242 VLALVARGLNNAEAAQTLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLV 295


>gi|296131165|ref|YP_003638415.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022980|gb|ADG76216.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 254

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +       +  +      +  +       S       L               
Sbjct: 10  TTVLVVDDQPLIRQGIRAVLRGQPGVEVVGEAHDGHSAVRTARRL--------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +      V+         ++              
Sbjct: 55  RPDVTLMDVQMPGMDGVEATRVICADDDPPTSVVV-------LTMYDQDEHVFEALRAGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                     + +   +        ++       +       A              ELT
Sbjct: 108 RGLVLKDAPTSELVAAIHAAAAGDSLLSPSVTRRLI---EEFARRPTVRMEATDGPAELT 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    + +G ++ E A  L +  +TV +++ S+ RK   + R  A+ YA  + +V
Sbjct: 165 ARERDVFRLLVQGLSTAEAAERLTLGDSTVKSHVQSLYRKLGVRDRVQAVIYAYEHGLV 223


>gi|225020339|ref|ZP_03709531.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946728|gb|EEG27937.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 233

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 19/240 (7%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  + +   +  S +    D +  +   +                G    +L +   
Sbjct: 4   TVGLADDQQLVRAGFSMVLGSQDDIEVVWEANN---------------GREAVMLAQRQP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      D  + +            +    +    F T    +       +
Sbjct: 49  VDVILMDIQMPVVNGIDATKEIVAQRLRG--PAGELTRIVVLTTFDTDNYVVQSIEAGAS 106

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFEL 186
            +         +   +  +     +I       +               V   +     L
Sbjct: 107 GFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLRTHMAPTVDPMVALNRGLVEPL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+ G ++ EIA  L IS  TV  ++  ++ KT ++ R  A+ YA    ++
Sbjct: 167 THREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFDRGVI 226


>gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51]
 gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 212

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 74/242 (30%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ I L  +       +  L         +   D        +  L+           
Sbjct: 1   MKKIKIFLVDDHTIFRQGIRLLLNLQSDFEVIGEADNGTQAVSMVQQLS----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         + +          V  +   +           +    
Sbjct: 50  ----PDVVLMDIAMKGMDGLTATKDVLA--------VSPKTKVILLTQHENKEYILPALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +   +     +  +       +A    N ++  +       
Sbjct: 98  IGAAGYVLKRAAADEVVNAIRATYQGRSFLDPE-------IADIVVNAYRQGNE--DAYE 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++G T++EIA IL IS  TV+ + +++M+K +  ++     YA++  
Sbjct: 149 TLTEREREILILLAKGHTNNEIAPILNISSKTVDYHRSNLMKKLSLHSKVELTKYALKRG 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
          Length = 171

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D ++      +  + +  +         +    +    F    +     
Sbjct: 2   ALELRPDIILMDLVMDEMDGIEATKEIMQNW--------KEAKIIIVTSFIDDEKVYPAL 53

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y   T   + I   +   +    ++  +   ++            +        
Sbjct: 54  EAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRL--------TAKPEKNLH 105

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++
Sbjct: 106 DDLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKH 165

Query: 244 NIV 246
           ++V
Sbjct: 166 DLV 168


>gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185]
 gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185]
          Length = 581

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       + L R++ +D        +  L +             G     
Sbjct: 349 EEGMLVTCTIPRQTEIKNGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNEAID 408

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 409 LCGRLQPHVILMDLDMQHMDGIEATKKIKQQ-----WPHIRVLIFTT---FQDTEQAVES 460

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 461 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAA 516

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+ 
Sbjct: 517 VYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALE 576

Query: 243 NNIV 246
             I+
Sbjct: 577 IGII 580


>gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 218

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 12/219 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +     +  + +   G +    V   L     +D  +         
Sbjct: 8   ADDQAMVRQGFGALLGAQPDISVVGDAPDGRAAVTEVARLLPDVVLMDVRMPEMNGLQAA 67

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +                 L    F              + +         +   + ++
Sbjct: 68  EEILRRH--------DGVRVLMLTTFDIDDYVYEALRVGASGFMLKDAPAEELVRAVRVV 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++       +        +  +      G    LT RE E L  ++ G+++ EIA
Sbjct: 120 HEGQSLLAPSVTRRMIAEVTAARSRRRPAPAELG---TLTPREREVLEAVAAGRSNAEIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +++ +++K   + R+ A+ YA    +V
Sbjct: 177 ETLFVSEQTVKTHVSKVLQKLGLRDRAQAVVYAYETGVV 215


>gi|269925757|ref|YP_003322380.1| two component transcriptional regulator, LuxR family [Thermobaculum
            terrenum ATCC BAA-798]
 gi|269789417|gb|ACZ41558.1| two component transcriptional regulator, LuxR family [Thermobaculum
            terrenum ATCC BAA-798]
          Length = 1648

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 33/239 (13%)

Query: 8    VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            + +V+  +       +  L   S+    +                    G     LV   
Sbjct: 1439 LRVVIADDHALFRDGIKSLLE-SEGFQMVGEASN---------------GQEAVELVHNL 1482

Query: 68   LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  +D  +      D +R ++  +             +         +         
Sbjct: 1483 SPDLVLMDLSMPVMGGLDAIRLISADK--------PSVKVIVLTASEEDKDLFEAIKAGA 1534

Query: 128  NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
              +     +       L  +      I          LA    + F    V       LT
Sbjct: 1535 QGFIPKNLESEEFFQLLRNVIRGEPAITPR-------LAGKLIDEFSR-PVRSSSLQMLT 1586

Query: 188  GREVECLTWISEGKT-SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             RE E L  +  G T + +++  LG+S +TV  ++ +I+ K   ++R+  +A+AV++ +
Sbjct: 1587 DREQEILQLLVNGVTSTKDLSRQLGVSEHTVKYHLRNILSKLHLQSRAQVVAWAVQHGL 1645


>gi|294791142|ref|ZP_06756299.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
 gi|294457613|gb|EFG25967.1| putative two-component system response regulator [Scardovia
           inopinata F0304]
          Length = 214

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 69/228 (30%), Gaps = 17/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
           +S  +H+    D  A    L   +S    M  + E   G+    L      +   +D  +
Sbjct: 3   SSSQTHVLIADDNPAIRASLTALISSQEDMDVVAEAADGSEAVDLALSHRPEVILMDVQM 62

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D  R +  S              +   VF                +       A
Sbjct: 63  PILSGLDAARMLMKSSAPP--------KIIMLTVFDFDEYVYDALHAGATGFLLKNSSPA 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +        ++       +           +  D        LT RE E L  I 
Sbjct: 115 TILDAVRSCSFDASLLSPRITQRLIEKL-----APRKPDALVNS---LTKREKETLILIG 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T+ E+A  L I+  +   Y++ IM K    +R+  + +A  N +V
Sbjct: 167 KGMTNAELAQELFITETSARTYVSRIMAKLNISSRAQLVIFAYENGLV 214


>gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 201

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 78/200 (39%), Gaps = 16/200 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           +L        +     V + WP +L++        +   V+ +  +   P   ++   + 
Sbjct: 2   VLDLSSELASELSQYTVITSWPAELLQRYDEEGMLQNSRVMAQLKKSTIPFSVSMDFLVN 61

Query: 122 PPAGMDN--------------RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
               + N                     DV   R  +        ++   RL E+  ++ 
Sbjct: 62  GEEHIANKTVIGLFERFEMVNSVWFPVHDVTMRRGAISF-SGNKAVLPTTRLAELLYISC 120

Query: 168 YQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +             +  E L+ RE++CL W + GKTS EIA I+ +S +T+N+Y+    +
Sbjct: 121 HVFARLSEIRRLDLRVPETLSEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATK 180

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K  T  R+ A+A A+R  ++
Sbjct: 181 KLDTVNRTQAVAKALRVGLI 200


>gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
 gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides]
 gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
 gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131]
 gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N]
          Length = 233

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 19/232 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D++          S+   +  L + +G  +                    ++P       
Sbjct: 2   DIIDLSTVATDDASFLDYIDQLCQKLGFDYASYATTSPMTGAVQGYA---NYPDSWKMHY 58

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM----------DNRYCSLTFDVARI 140
                 +    + +      PV  +  E       +                        
Sbjct: 59  MRRNLHRVDPTIHKSALSIAPVDWSRFERDERFRAVFFAAEDFGITPQGLTVPVRGPYGD 118

Query: 141 RIGLML----LFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECL 194
           R  L +      P+     R  + E+ + A +  +     D      +   L+ RE+E L
Sbjct: 119 RGLLSVTRNCARPEWEKHKRAVIGELQVAAVHLHDAVMRSDVISRALRQPRLSTREIEVL 178

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GK+  +I  ILGIS  TV  ++ S   K  T +   A+  A+   +V
Sbjct: 179 QWAAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGLV 230


>gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 74/239 (30%), Gaps = 34/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  ++L  +       +  L +  D    +                    GA      
Sbjct: 1   MTECRVLLVDDHPLMRRGIHQLLSFEDEFEVVAEASN---------------GADAVAKA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D +  +   +       +   T    P      +      
Sbjct: 46  HEHKPDLVLLDLNMKGMSGLDTLNALRADD---CDAAIVILTVSDSPA-----DIEAIVK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L L     +   ++        A Y A+   S DV      
Sbjct: 98  AGADGYLLKDTEPDELVDLLKLSLRGNKAYSQEV-------AKYLADRENSSDVFD---- 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 147 ELTDREMQILREVAKGDRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 213

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E     +         +  +                    G     L 
Sbjct: 1   MSNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASN---------------GREGVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LALKPDVLVMDLVMPELGGVEATLEILDKW--------KDAKVLVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D H     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVSKGELAIETE-----------VDKKIKAHDQHPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|302518567|ref|ZP_07270909.1| two-component system regulator [Streptomyces sp. SPB78]
 gi|302427462|gb|EFK99277.1| two-component system regulator [Streptomyces sp. SPB78]
          Length = 226

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 9/223 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWP 83
                AR++ +D    W   +    E  G                    + D +V     
Sbjct: 3   APAQPARVMVVDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATATRPDVLVLDLNL 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L          +    L               + +         Y   +     +   
Sbjct: 63  PGLPGVEVCKRLVRERPELHVL---VLSASGEHADVLEAVKSGATGYLVKSASTEELIEA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +        +        +       A   +      G +   LT RE E L  +++G +
Sbjct: 120 VRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPETPRLTERETEVLRLVAKGLS 179

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 180 YKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222


>gi|297162688|gb|ADI12400.1| two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 11/228 (4%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S +  +    D +         +     +  + E   G      V         +D  +
Sbjct: 1   MSSLIRVVLADDQVLVRAGFRALLDAQPDIEVVGEAADGERAVAQVCEVRPDVVLMDIRM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R +           L     +    F              + +     +  
Sbjct: 61  PQLDGLAATRRITE------DPALAEVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPE 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     ++       +  +A + A   +          ELT RE E +  + 
Sbjct: 115 ELLRAVRAVVAGDALLSPGVTRRL--IAEFAARSKEPAPAAV--LAELTEREREVMALVG 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 171 IGLSNEEIARRLVVSPLTAKTHVSRTMIKLGARDRAQLVVLAYESGLV 218


>gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591]
          Length = 250

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 26/198 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP------------ 122
           D ++ S++P + V     +       V+        P        I+             
Sbjct: 43  DVVIISNYPPEWVDIYRSNNYQHIDPVILTAINKISPFSWDDDLVISSKLKFSRIFNLSK 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYD 177
              + N Y  +  D       L  +  + R    + +      ++ +L         S  
Sbjct: 103 EYDIVNGYTFVLHDPGNNLATLSFMVEEHRSSELEEIIQNNRDKLQMLLISAHEKLTSLH 162

Query: 178 VHWGKDFE---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
               ++            + RE E L W S GKT  EIA+ILGI+ +TV  +I ++++K 
Sbjct: 163 REMSRNRHNSKPQEADIFSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKL 222

Query: 229 ATKTRSGAIAYAVRNNIV 246
                  AI   V  N++
Sbjct: 223 GVLNAKHAIRLGVEMNLI 240


>gi|163846970|ref|YP_001635014.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524791|ref|YP_002569262.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668259|gb|ABY34625.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448670|gb|ACM52936.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 218

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 10/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +S    +  + +   G     LV         +D ++     
Sbjct: 4   RVLIVDDQALIRTGIATLLSRKADIEVVGQAGNGREALELVASLDPDVVLMDVMMPVMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A            RP  +    FH     +   A     Y     D   +   
Sbjct: 64  VEATRKLAERG--------PRPAVIMLTTFHDDERVLQSIAAGARGYLLKDVDHRVLADS 115

Query: 144 LMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +   G +I    + ++   LA+       +          LT RE + L  +++G T
Sbjct: 116 IRTVAGGGALIHPQIIAQLLPRLASLAPTPVTASSSPSDVTSILTPRERDILRLLAQGYT 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EI   L +S  TV N+++ I  K A + R+ A  +A  +
Sbjct: 176 NQEIGEQLALSVGTVKNHLSVIFAKLAVRDRTQAALWAREH 216


>gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 213

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +          L      +  +   +                G     L +  
Sbjct: 5   IKVMLVDDHAVVRMGFKLLLESDQAIQVIAEAES---------------GEQAIKLYQEH 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +  +   +        +    L                   
Sbjct: 50  RPDVVVMDITMPGIGGLEAIDRIRAKD--------EHARILVLSAHEDSVHPKRVLNAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +      +  +   ++           +           L+
Sbjct: 102 MGYLTKRSAAEELIKAIHTVAGGKMYLEANVAQQMA---------IQQISGQQNPVDVLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +++GKT++EIA IL +S  TV  ++ +I +K      +     A+R+ ++
Sbjct: 153 DREFEVFMALAKGKTTNEIADILSLSPRTVGTHLYNIKQKLNASNSAEIALIAMRSGLI 211


>gi|17229196|ref|NP_485744.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135524|dbj|BAB78070.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 239

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 74/257 (28%), Gaps = 34/257 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I L  + +     +     + + +  +            +  +            
Sbjct: 1   MNKIRIALIEDHDLTRVGIRTALLQKEEIEVVGEAANATEGLNMLKKV------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L + +                 L   +       +   A
Sbjct: 49  ---QPDIAIVDIGLPDKDGIELTKELKSISNGADLP----TKVLILTLRDNKEAVLAAFA 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-----------QANMF 173
              + YC        +   + + +     I       +   A               N F
Sbjct: 102 AGADSYCMKDIRFDNLLEAVRVTYNGNAWIDPAIARIVLQQAQQQSPKPVTTITEAKNSF 161

Query: 174 KSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            + +          + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K  
Sbjct: 162 ANSETEDNLETIDSYTLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLC 221

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 222 ADDRTQAAVRALRSGLV 238


>gi|121998744|ref|YP_001003531.1| two component LuxR family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121590149|gb|ABM62729.1| two component transcriptional regulator, LuxR family
           [Halorhodospira halophila SL1]
          Length = 217

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 61/220 (27%), Gaps = 19/220 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           R++ +D    +   +  L    G              LV         LD  +       
Sbjct: 2   RILLVDDHQLFRAALQELLNAQGLTTESGSGQDDVLGLVDSFGPDLVLLDLRMPGQDGLA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++R +                 +         +           Y     D   +   L 
Sbjct: 62  VLRQIHERH--------PGLPVVMLTGSEEERDLFDCLRAGAQGYLLKHNDPEYLISALH 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   +       +        +  +           LT RE + L  ++ G+++  
Sbjct: 114 QATDGKIAVAPQLTDTLARALGQPPDRTEPGPP--DPFAGLTPRERDILERLAAGESNKV 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  LGIS  TV  ++ S++RK    +R  A   AV   +
Sbjct: 172 IARHLGISDGTVKLHVKSVLRKLGVHSRVEAAIKAVDFGL 211


>gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family
           [Actinobacillus succinogenes 130Z]
          Length = 209

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  ++L  +       +  L    ++   +                    G     L  
Sbjct: 3   EKTKVLLIDDHPLMRRGIKQLIELDEIFEVVGDAGN---------------GNDGISLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +     D           +   V     +       
Sbjct: 48  QLEPDLIVLDLNMKGLSGLDTLKALRNEGVD--------ARIVILTVSDAKNDIFALIDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   + + L  +     ++                ++           + 
Sbjct: 100 GADGYLLKDTEPDVLLVQLKRIAGGEVVLSDS-----------IKDLLLERHASKDPIYS 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A    + +
Sbjct: 149 LTDREMDVLQQIATGLSNKQIAGKLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEH 206


>gi|317506347|ref|ZP_07964159.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255357|gb|EFV14615.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 225

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 20/245 (8%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   +Q+ I+L  +     S V         L  +                      + 
Sbjct: 1   MNERNEQIRILLVDDHAMFRSGVKAELAAHPDLVVVGEASGPA---------------AA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
              +R +      LD  +       +++        +       P  L   V  +  + I
Sbjct: 46  VAAIRAESPDVVLLDVHMPDGGGLAVLKAALK---PEGAPAGPVPKFLALSVSDSAADVI 102

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y + +     +   +  +     +        +  L A+ +       V  
Sbjct: 103 ALIRAGARGYVTKSISGDDLAESVRRVASGDAVFSPGLAGFV--LDAFASAAVAEEPVSN 160

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE++ L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A
Sbjct: 161 PDLDSLTPRELDVLRLLARGYTYREIASELFISVKTVETHTSNVLRKTQQSNRNALTWWA 220

Query: 241 VRNNI 245
               I
Sbjct: 221 KDQKI 225


>gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 238

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 73/244 (29%), Gaps = 30/244 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + ++ +   +D +  +      +        L               
Sbjct: 7   VRVLIADDDPLLRAGLAVVLETADRIEVVGQAGDGLRAVELARRL--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              L    F              
Sbjct: 52  RPDVVLMDVRMPGCDGVEATRRLAGS----------ASRVLVLTTFRHDAYVWGALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGK 182
             +        R+   +  +     ++      ++                       G 
Sbjct: 102 AGFLLKRASPERLIDAVHAVAAGEAVLDPAVTRDLLGRLLAAPEPPPGPSAPPPGSVPGP 161

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L   +EG  ++EIA +L ++ +TV  ++  I+ K   + RS A+A A R
Sbjct: 162 LAALTVREREVLRLAAEGHPNEEIAALLHLAESTVKTHVKRILGKLGARDRSQAVAAAYR 221

Query: 243 NNIV 246
           + ++
Sbjct: 222 HGLM 225


>gi|186470703|ref|YP_001862021.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197012|gb|ACC74975.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 219

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 62/218 (28%), Gaps = 16/218 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V+ +    D       +   +        + E   G     L          +D  +   
Sbjct: 4   VNTVLLIDDHALFRKGVAQLIQMNPAFRVVGEASSGRVGVDLAVRLKPDVVLIDLNMPDM 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  M     D           L   V     + +       + Y     +   + 
Sbjct: 64  NGIETLEMMRQHGVD--------ARFLMLTVSDNERDVVAALRAGASGYLLKDMEPEELC 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + L        ++      ++        +   +          L+ RE E L ++ EG 
Sbjct: 116 LNLQKALQGTAVLSEAVTGKL-------FHALSAGQPLPANQSNLSVREQEVLDYLVEGM 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + EIA  L IS  TV  ++  ++ K    +R  A+ +
Sbjct: 169 CNKEIARKLDISVGTVKVHVKHLLHKLDLHSRVEAVVW 206


>gi|28898681|ref|NP_798286.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839650|ref|ZP_01992317.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|153841882|ref|ZP_01993448.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260364886|ref|ZP_05777457.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260879713|ref|ZP_05892068.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260898812|ref|ZP_05907253.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260900783|ref|ZP_05909178.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28806899|dbj|BAC60170.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149745434|gb|EDM56685.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|149746824|gb|EDM57812.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308086611|gb|EFO36306.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093313|gb|EFO43008.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308106843|gb|EFO44383.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308111747|gb|EFO49287.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|328474754|gb|EGF45559.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 212

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 58/231 (25%), Gaps = 22/231 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +       V       D     + L+  +         T   G     +V+        +
Sbjct: 2   DKPISVVIVDDHQVVLDGFIARLELEPDIDVIG-----TASNGLEAIEVVKHLRPDVVLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    +           L     L   +       +         Y    
Sbjct: 57  DISMPIMNGIEATGVIKEE--------LPESKILMLTMHDNREYIMKVMQAGAVGYMLKE 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 109 ISAEKMVQAIKTVNQGSTYFCESVTQTL---------FTQEIKPAHHKPNPLSRREEAVL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA    +
Sbjct: 160 RLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETGL 210


>gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
 gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
          Length = 211

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + E     VS        +  +                    G     +    
Sbjct: 2   IRILLVDDHEMVRIGVSAYLQSQQDMEVVGEATN---------------GQEAVQMALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +                 +    F    +         
Sbjct: 47  RPDLILMDMVMPIMNGAEATKAIIEQW--------PEAKIMIVTSFLDDDKVYPALQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   +RI   +        ++  + + ++           +   V      +LT
Sbjct: 99  VSYILKTSKASRIADSIRETMNGTPVLEPEVMTKM-------MKQMRHERVLHD---DLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G T+ E+A  L I+  TV  ++++I+ K     R+ A+ YA ++ ++
Sbjct: 149 EREMEILLLLARGLTNQEVADQLFIAVKTVKTHVSNILAKLEVHDRTQAVIYAFQHKLI 207


>gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 226

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 8/224 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L    L     +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEDDMEVIGEASDGAEAVRLAASHLPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +         +     + + +   
Sbjct: 64  LAATRHISA------DPALAAVHVVMLTTFEVDEYVVQSLRAGAAGFLGKGAEPSELLGA 117

Query: 144 LMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +        ++       +     A       +  V   +   LTGRE E L  ++ G +
Sbjct: 118 IRTAAAGDALLSPAATRSLITRFLAQAPGTGPATGVDSARLAALTGREREVLVQVAAGLS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 178 NDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221


>gi|71279999|ref|YP_268149.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71145739|gb|AAZ26212.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 215

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 34/245 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N +   V++ +  +       +    +  D +  +   D       +   L         
Sbjct: 3   NLKELPVSVQIVDDHPMVQGGLKACLSFYDDIIIVGSTDDGSDALNKAIEL--------- 53

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       +D  + +    D    +           L     L   +        +
Sbjct: 54  ------KPDVILMDISMPTMNGIDATEIITEQ--------LPETKVLILSMHSNPEFVKS 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y         I   +  +              +               V+  
Sbjct: 100 AIQAGAVGYLLKDTTSEEIYYAIKAVANGKTHFSSSIAKLLI-----------DNPVNTN 148

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +LT RE   L+++++GKTS EIA IL IS  TV  +  ++  K    + +  I+YAV
Sbjct: 149 ESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLGIHSLAKLISYAV 208

Query: 242 RNNIV 246
           ++ I+
Sbjct: 209 KHGII 213


>gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
 gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC
           23685]
          Length = 239

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 67/228 (29%), Gaps = 25/228 (10%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +     Y G   F  +  +       +  + S++P + V         +   V
Sbjct: 9   AQDIKRFIDQSLSYYGQLQFAYLLLNKKNPT--EITIISNYPDEWVTLYKEHHYQQIDPV 66

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDN------------RYCSLTFDVARIRIGLMLLFP 149
           +        P        +     +               Y  +  D       L L+  
Sbjct: 67  VIYALRRVSPFLWDEKITVNAKLNLSKIFSLAKKYQVNKGYTFVLHDADNQLAMLSLMVD 126

Query: 150 KGRI-ILRDRLWEIGLLAAYQANMFKSYDVH----------WGKDFELTGREVECLTWIS 198
              + I+      + +L       F +                 +   + RE E L W S
Sbjct: 127 DHSLSIVEQNQGALQMLLINAHERFMTGQRQLQVQQHNIKSNNMENIFSARENEILYWAS 186

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+ILGI   TV  +I ++++K        AI   V   ++
Sbjct: 187 MGKTYQEIALILGIKSGTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 234


>gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + +  + EQ  + +  L  R+D    +       +    +                 
Sbjct: 2   PITVSIVEDSEQVRNTLEKLLNRADGFKCLSQYANAEAALEDL---------------PK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D  +   +D  +      + VR        +    LQ         +          A  
Sbjct: 47  DKPEVVLMDINLPGINGVECVRR-----LKQAAPDLQVMM---LTAYEDTENIFAALAAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +  +   G  +      ++        +           +  L
Sbjct: 99  ASGYLLKRTPRTELLEAIREVKRGGSPMSTHIARKV------VQSFRAPTAATPPPEHNL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + RE E L  +S+G    EIA  LGIS  TV+ YI  I  K   +TR+ A+A  ++ 
Sbjct: 153 STREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIRRIYEKLQVRTRTEAVAKFLKR 209


>gi|182439137|ref|YP_001826856.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467653|dbj|BAG22173.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 244

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 14/227 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V     M  + E   GA    + R        +D  +      
Sbjct: 21  VLLADDQALLRSAFRVLVDSEPDMVVVGEAADGAQAVDMARASGADVVLMDIRMPGTDGL 80

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R ++          L     +    F      +       + +     +   +   +
Sbjct: 81  AATRMISA------DPELSAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPDELLNAI 134

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-----WGKDFELTGREVECLTWISE 199
            +      ++        GL+A + A    S +         +   LTGRE E L  ++ 
Sbjct: 135 RIAAAGEALLSPAATK--GLIATFLAQGGSSGEGPDSAEYAERLAALTGREREVLVQVAG 192

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 193 GHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 239


>gi|332202293|gb|EGJ16362.1| response regulator [Streptococcus pneumoniae GA41317]
          Length = 210

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|315612573|ref|ZP_07887486.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315554|gb|EFU63593.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 210

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   GA    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGAQGIDLALQLRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 215

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 32/242 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     S  + +    + +  +      +     +                  
Sbjct: 1   MKVVIADDHAVVRSGFAMIINFQEDMEVVATAADGIEAYKMVAK---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++ +         +  + K            +   +               
Sbjct: 45  ----HRPDILLMNLSMPPGENGLIATAKIHED--FPETNIIILTMHDDEEYLFHVLKKGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y        ++   + ++   G  I          LA+     F S D    ++    
Sbjct: 99  RGYVLKNSPDEQLVSAIRMVHQGGVYIHPK-------LASSLVREFVSQDQQADENNPYQ 151

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REVE L  +++G  + EIA +L IS  TV  + A IM K   K+R   + YA++  
Sbjct: 152 LLSTREVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKIMEKLNLKSRPELVEYAIKKK 211

Query: 245 IV 246
           ++
Sbjct: 212 LL 213


>gi|124006802|ref|ZP_01691632.1| two-component response regulator [Microscilla marina ATCC 23134]
 gi|123987483|gb|EAY27192.1| two-component response regulator [Microscilla marina ATCC 23134]
          Length = 208

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +  + +R D +  +           ++  +               
Sbjct: 2   ITLYLIDDHALVRLGLKKILSRFDEIKILSDFSSAAEALEQLDHV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +  +       D           +           +       
Sbjct: 47  KPDLVLCDISLPEMDGIEFTKKAKSKHPD--------LKVIMLSSHKEEFYVLKAVEAKA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   G    +D       ++    N F + D       +L+
Sbjct: 99  DGFLHKDVLENELIEAIKRVNQGGNFYSQD-------ISQIIINSFVNGDKPSIP--QLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L ++ EG ++ EIA  L IS  TV+N+ A+I++K   K     + +A+ + +V
Sbjct: 150 AREKEVLHFLVEGLSNKEIADKLFISSKTVDNHRANILKKLNLKNNVQLVRFALEHKLV 208


>gi|90407707|ref|ZP_01215886.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp.
           CNPT3]
 gi|90311176|gb|EAS39282.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp.
           CNPT3]
          Length = 211

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 21/228 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R   +   P     +A+++ LD      +   +     G                LD
Sbjct: 3   NAIRVMIIDDHPLMRKGIAQLLSLDSKFEIVVEAKS-----GEEGLEFANQYQLDLILLD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + ++ +                 +   V     + I       N Y     
Sbjct: 58  FNMQGISGLETLKRLRSQGH--------LTKIIILTVSDNKQDVIAMINHGANGYFLKDS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D + +   +  +     ++  D +  +        N     D    K   LT RE + L 
Sbjct: 110 DASLLLSNINKVLAGELVLSDDLIKYL--------NDLDEEDNIREKLNNLTKRERQILQ 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            I++G+++ EI++ L IS  TV  ++ S+++K   K+R  A    ++ 
Sbjct: 162 EIAKGQSNKEISINLHISEGTVKVHVKSLLKKLQAKSRVEAAIVYLQQ 209


>gi|84495104|ref|ZP_00994223.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384597|gb|EAQ00477.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     + +  L    D +  +            +  LT              
Sbjct: 2   IRVVLADDQLLLRAGLRALLDAEDDIEVVGEASDGAEAVELVRTLT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A          L     +    F              
Sbjct: 48  -PDVVLMDIRMPGTDGLEATRRIAA------DESLAETKVVILTTFDLDEYVFEAVRIGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +  G+  +     ++       +  +  + +    +      +   LT
Sbjct: 101 SGFLVKDTEPTELLRGVRAVAGGDALLSPRVTRRL--IGEFASRSRDTSMPAARELALLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  + EG ++DEIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 159 DREREIVGLVGEGLSNDEIATRLVVSPATAKTHVSRAMVKLHARDRAQLVVLAYESGLV 217


>gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 242

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D +  +   +     +  M      +  S F  +      +      + S +P +     
Sbjct: 7   DFIDHLSSAEDQAELSGAMAVTAAALDLSCFAYLALPQKLDGTPR--LMSTYPKEWTSHY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFDV 137
             S  ++   V+ +      P                    +     G+   +     D 
Sbjct: 65  LRSHYERIDPVIMQALRDTEPFRWGIGSTERYLSPAQKRLLDEASQYGIRLGFTVPIHDG 124

Query: 138 ARIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWGKD--FELTGREV 191
                 +     +        +      + L+A +  +  +       +     L+ RE 
Sbjct: 125 HGPVAAVTFAGNQREAQFERFVTSNPRMLQLMAMFFHSHVRRKLASDLRVDGAALSAREF 184

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ECL W + GK++ +I  ILGIS +T  +Y+ +   K   +T   A   
Sbjct: 185 ECLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRTVVQAALR 232


>gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
 gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri
           L37603]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    + +  +      V    ++                  
Sbjct: 2   LKIVIADDHAIVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEF--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D ++           +  + K            L   ++              
Sbjct: 47  -----KPDVLLMDLSMPPGESELIATSKIHES--FPETKILILTMYDDEEYLFHVLRNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++ + +  ++     +  D      L+  +  +  + Y         L+
Sbjct: 100 KGYILKNAPDEQLLLAIRTVYNGETYV--DMKLTTSLVNEFVNSSNQEYTDTSDPFKVLS 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 158 KRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELVEYAMKKKLL 216


>gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
 gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp.
           JE062]
          Length = 254

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 69/235 (29%), Gaps = 20/235 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS--IVSSDWPFDLVRC 89
               +       +    +    E +G      +     + +  D   I  S+   D V  
Sbjct: 18  FSQELWNCSSLQARWEELTRFAEKLGFEKGAYIIVPKIEGRVEDRQPICLSNHSQDWVEH 77

Query: 90  MALSEKDKYYNVLQRPTE-----------LFCPV--FHTLPENITPPAGMDNRYCSLTFD 136
                       +                   P     +   N    AG+          
Sbjct: 78  YNSHHYYFKDPGMDHLLSGRKVDQLWTDYTVRPTSKVDSDFFNDVRSAGLKFGVTIPLEC 137

Query: 137 VA-RIRIGLMLLFPKGRIILRDRLWE----IGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +  G      +   +  D        +   A +  + +        + F  T RE 
Sbjct: 138 SNKHLVGGASFASCERTQLGFDAQMTSNYPVLKGAVHLFHTYAQEPETLSEFFGFTPREH 197

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W++ G+ + EIA IL +S  TV ++I    +K     R+ A+A A+   ++
Sbjct: 198 ECLLWLTAGRANKEIAHILNLSEKTVEHHIKRACKKLRVTNRTHAVARAMTFQLL 252


>gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 254

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 69/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L  ++G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSAATLDQQMDCALLLASHMGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP------------------ 122
           + P D           +   V         P   +                         
Sbjct: 62  NTPADWHSLWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDLHKPVVRYLH 121

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
            + M     +           L  L      I  +       E GLLA     +      
Sbjct: 122 DSHMTCGVTAPIHMPKGGFATLTGLRSDNSDIALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +      LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 EKMRSCTAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|300787274|ref|YP_003767565.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796788|gb|ADJ47163.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 213

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 61/227 (26%), Gaps = 20/227 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L  ++ ++                GA    +          +D  
Sbjct: 3   IRIVLADDHPVVRAGLVGLLAMEADFEIVGEA-----ADGAEAVAVTAALRPDVVLMDLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +           +     L    + T    +       + Y       
Sbjct: 58  MPELDGVAATARIVAE--------VPGCRVLILTTYDTDQNIVHAVEAGASGYLLKDATP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        ++    + ++        N  +S      +   LT RE + L  +
Sbjct: 110 EELAAAVRAAAGGETVLSPAIVAKL-------VNHLRSPAPAPAEPELLTPRETQVLRLV 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + G T+ +I   L IS  TV  ++  +  K     R+ A+  A++  
Sbjct: 163 ARGLTNADIGRELHISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRG 209


>gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 209

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 31/232 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++   +  + +  +               L               
Sbjct: 2   IRVLLVDDHEMVRMGLAAYLSTEEDIEVVAEAGSGEEGVRMTQELL-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +  S              +    F    +         
Sbjct: 48  -PDVVLMDLVMEGIGGVEATRRIRES--------CPSSKVIVLTSFIDDEKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +        ++      +I     +                +LT
Sbjct: 99  FSYLLKTSRAAEIAKAIRSAAAGEPVLESRVAGKIMARFRH--------GQESHPHEQLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE+E L  I +GK++ EIA  L I   TV  ++++I+ K   + R+ A  Y
Sbjct: 151 PRELEVLKLIGQGKSNQEIADELIIGIKTVKTHVSNILAKLNVEDRTQAAIY 202


>gi|322374884|ref|ZP_08049398.1| DNA-binding response regulator VraR [Streptococcus sp. C300]
 gi|321280384|gb|EFX57423.1| DNA-binding response regulator VraR [Streptococcus sp. C300]
          Length = 210

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVASGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|270293338|ref|ZP_06199547.1| DNA-binding response regulator VraR [Streptococcus sp. M143]
 gi|270278187|gb|EFA24035.1| DNA-binding response regulator VraR [Streptococcus sp. M143]
          Length = 210

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   GA    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGAQGIELALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKER--------PEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHIELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
 gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24]
          Length = 304

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 12/233 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQK 73
           +  +      S+   R+  +D        ++ +       + VG +       +L    K
Sbjct: 77  SCVLPKQVQLSNKQIRLCIVDDHSFIRESLHTILSGLEDLQVVGMAEDGEQALELCGRLK 136

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D ++      +L    A     K +  ++         F              + Y   
Sbjct: 137 PDVVLMDLEMPNLDGIHATKMIKKRWPEIRVLILST---FQNTERAKEIIRNGADGYVLK 193

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           + D   +   + L++  G +I  D    +              D     ++ L+ RE+E 
Sbjct: 194 SIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGI---EYGLSKRELEI 250

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A    ++
Sbjct: 251 LELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGLL 303


>gi|291442824|ref|ZP_06582214.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291345771|gb|EFE72675.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 10/192 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G     LVR        +D  +         R +           L     +    F 
Sbjct: 36  ADGEEAVRLVRELRPDIVLMDIRMPRLDGLAATRRITG------DPELNDVKVVMLTTFE 89

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                        + +     +   +   +  +     ++       +      +     
Sbjct: 90  LDEYVFEALRNGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRL----IAEFAARS 145

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE E +  +  G +++EIA  L +S  T   +++  M K   + R+
Sbjct: 146 KEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRA 205

Query: 235 GAIAYAVRNNIV 246
             +  A  + +V
Sbjct: 206 QLVVLAYESGLV 217


>gi|160874438|ref|YP_001553754.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160859960|gb|ABX48494.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315266674|gb|ADT93527.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 216

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   +++ L  + +     ++ L   SD +  +   +       ++           
Sbjct: 1   MDTQNNIISVGLVEDQQLVRQGIASLLAISDNIRVLWQAEDGQDALSQL----------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +       D  + +     +++ +  S              +    F      +
Sbjct: 50  ----DNNPVDVLLSDIRMPNLDGIAMLKQIRQSANS--------LPVIMLTTFDDSELFL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N +      + ++   +  +   G +I    L ++       +    +  V  
Sbjct: 98  NSLQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQM-------SEPKPAPSVGE 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   
Sbjct: 151 TRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKG 210

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 211 LQLALI 216


>gi|317499014|ref|ZP_07957295.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893664|gb|EFV15865.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 222

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +    + +               +                 D
Sbjct: 2   IKVMIADDQELIRQSLQIVLEMKEGIEVTATAKDGREVIQEVRK---------------D 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +        Y  ++    +    F              
Sbjct: 47  KPDVILMDVRMPEMDGVQCTQIIKEQ-----YPDVKI---IILTTFDDDEYVYNALKHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +   G +I  +   ++    +  A       +H     E+T
Sbjct: 99  SGYLLKGISMDELEKAIKTVHSGGAMINPEVATKVVDFFSEMAQSNYDTSIHAQNVEEIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E E +  +  G ++ EI+  L +S  TV NY+++I+ K   + R+    + V++ 
Sbjct: 159 EAEWEIIKLVGRGLSNKEISAELSLSEGTVRNYLSTILNKLDLRDRTQLAIWEVQSG 215


>gi|282866345|ref|ZP_06275390.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558741|gb|EFB64298.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 224

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 63/231 (27%), Gaps = 16/231 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V            ++     +             G      +         +D 
Sbjct: 2   AIRVMLVDDQVLLRTGFRMVLAAQPDMEIVAEAG-----DGQEAIDTLGSTAVDVVLMDV 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +              P  L    F       +      + +      
Sbjct: 57  RMPRLDGVEATRRICAQ----TDP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
            A +   +  +     ++       +  L  +   +  S      K  E LT RE E + 
Sbjct: 109 PAELLSAIRSVHSGDAVVAPSTTRRL--LDRFSPMLPSSGREPQHKHVERLTEREREVML 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 167 LVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|238064361|ref|ZP_04609070.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237886172|gb|EEP75000.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 229

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 9/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L R        +D  +     
Sbjct: 4   RVLLADDQALIRAGFRMLIQNAPDLEVVGEAANGQEAVRLARETRADVILMDVRMPDLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +           L     L    F              + +     + A +   
Sbjct: 64  LAATQAITA------DEALAGVRVLILTTFEADEYVFQALRSGASGFLGKGVEPADLLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++         L+A Y A++  +      +   LT RE E LT ++ G ++
Sbjct: 118 IRIVAGGEALLSPKATQ--ALIARYLASLKPATGAVPTELAALTEREREVLTLVAAGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + IA  L +S  T   ++  IM K   + R+  +  A +  
Sbjct: 176 NAIAERLYVSPLTAKTHVNRIMAKLGARDRAQLVVVAYQTG 216


>gi|328885463|emb|CCA58702.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 222

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +S    +  + E   G     L R        +D  +     
Sbjct: 3   RVVLADDQTLVRAGFRSILSDEEDLEVVGEAADGEQAIALARELRPDVVLMDIRMPVLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           L+    +    F              + +     +   +   
Sbjct: 63  LEATRRITA------DERLEGVRVVILTTFDADDHVYGALRAGASGFLVKDTEPMELLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     +I       +    A  A   +       +   LT RE E L  +  G ++
Sbjct: 117 VRVVARGDALIAPAVTRRLI---AEFAGRAERRPDPSPRLNALTEREREVLGLVGAGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L +S  T   +++ IM K A + R+  +  A  + ++
Sbjct: 174 DEIAGRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMI 216


>gi|260768300|ref|ZP_05877234.1| transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260616330|gb|EEX41515.1| transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 212

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 58/222 (26%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +      +     +  +     G     +V+        +D  +      
Sbjct: 7   VVIVDDHRVVLEGFMARLEMEPEIEVIATASNGLEAIDVVKQHRPDVILMDVSMPIMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +           +     L   +       +         Y         +   +
Sbjct: 67  DATRLIKEE--------VPNAKVLMLTMHDNREYIMKVMQAGPVGYMLKEISAENMVQAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +              +           +       K   L+ RE   L  +++G +S 
Sbjct: 119 KTVNLGSTYFCESVTQTL---------FTQEVIPSAQKPNPLSRREEAVLKLVAQGHSSK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA +L IS  TV  +  +I  K    + +    YA +  ++
Sbjct: 170 KIASLLNISYRTVETHRQNIKHKLDIHSTAELAHYASQRGLL 211


>gi|239981400|ref|ZP_04703924.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291453255|ref|ZP_06592645.1| two component response regulator MppU [Streptomyces albus J1074]
 gi|291356204|gb|EFE83106.1| two component response regulator MppU [Streptomyces albus J1074]
          Length = 223

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E     +  +      +  +      V        L               
Sbjct: 3   VKLVLVDDQEMVRRGMRVIFESQPGMEVVGEAGDGVEGVEIARRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++VR +A     +          +    F              
Sbjct: 48  QPDVVLADIRMPRMDGLEVVRRLAGPRAPEPRP-----KVVVVTTFDLDEYVYPALRNGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   +        +I       +           ++      ++  LT
Sbjct: 103 SGFLLKRSGPALLVEAVRAAMAGDSLISPSVTVRL----LRHVTGNRTPGDPAPREEALT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    ++EG T+ +IA  L IS  TV  ++A+I RK   + R G    A     
Sbjct: 159 EREGEIAALVAEGGTNADIAAELFISPGTVKTHVAAIQRKFGVRNRVGIAVRAFERGY 216


>gi|148994461|ref|ZP_01823662.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|168488084|ref|ZP_02712283.1| response regulator [Streptococcus pneumoniae SP195]
 gi|168490693|ref|ZP_02714836.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|168494570|ref|ZP_02718713.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|225860419|ref|YP_002741928.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|147927210|gb|EDK78245.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|183572895|gb|EDT93423.1| response regulator [Streptococcus pneumoniae SP195]
 gi|183575039|gb|EDT95567.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183575541|gb|EDT96069.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|225726539|gb|ACO22390.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|332075238|gb|EGI85708.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 210

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|253996742|ref|YP_003048806.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983421|gb|ACT48279.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 212

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+N++L  +          L      +  +   +       R                
Sbjct: 1   MSQINVMLVDDHAVVRMGFKMLLESDVDMKVVAEAESGEQAIQR---------------Y 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + +  +   + +    VL    +   P             
Sbjct: 46  VEHKPDVVVMDITMPGIGGLEAIERILAKDSNAKILVLSAHEDSVHP--------KRVLN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +    + +      ++           +          
Sbjct: 98  AGAMGYLTKRSAAEELIKAIRTVAGGKKYLEASVAQQMA---------IQQLSGDQNPVD 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E    +++GKT++EIA  L +S  TV  ++ +I +K      +     A+R+ 
Sbjct: 149 VLSPREFEVFMALAKGKTTNEIAETLFLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSG 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 226

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 77/247 (31%), Gaps = 24/247 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + I+L  +DE     +    ++   L      +                G + 
Sbjct: 1   MAISPTSIRILLVEDDELFRLGLVTRLSQEPGLDVAGEAED---------------GETA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
              V   LF    LD  +      +    +          VL   T    P         
Sbjct: 46  IAYVNQQLFDVVILDVGLPGIGGIEACHQIKK--IHPQLPVL-ILTSHSQPALINRL--- 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VH 179
                    YC        + + +  +             EI     + ++         
Sbjct: 100 --IEAQAQGYCVKGVAAETLVLAIRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLPLAD 157

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +  LT RE+E L+ +++GK++ EIA  L I+  TV  ++ +I+RK   + R+ A   
Sbjct: 158 ADGENPLTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALL 217

Query: 240 AVRNNIV 246
           A+   +V
Sbjct: 218 AIERRLV 224


>gi|15900310|ref|NP_344914.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15902388|ref|NP_357938.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|111657155|ref|ZP_01407935.1| hypothetical protein SpneT_02001620 [Streptococcus pneumoniae
           TIGR4]
 gi|116517140|ref|YP_815865.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148988147|ref|ZP_01819610.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148996798|ref|ZP_01824516.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006139|ref|ZP_01829868.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012131|ref|ZP_01833240.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|168485529|ref|ZP_02710037.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168576782|ref|ZP_02722640.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|182683352|ref|YP_001835099.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|221231258|ref|YP_002510410.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225856124|ref|YP_002737635.1| response regulator [Streptococcus pneumoniae P1031]
 gi|225858242|ref|YP_002739752.1| response regulator [Streptococcus pneumoniae 70585]
 gi|298231095|ref|ZP_06964776.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254642|ref|ZP_06978228.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502187|ref|YP_003724127.1| LuxR family response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255739|ref|ZP_07341782.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303259462|ref|ZP_07345439.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262993|ref|ZP_07348927.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303267350|ref|ZP_07353209.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303269845|ref|ZP_07355590.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307067043|ref|YP_003876009.1| CheY-like receiver/HTH DNA-binding domain-containing response
           regulator [Streptococcus pneumoniae AP200]
 gi|307126599|ref|YP_003878630.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|5830527|emb|CAB54571.1| response regulator [Streptococcus pneumoniae]
 gi|14971857|gb|AAK74554.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15457902|gb|AAK99148.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116077716|gb|ABJ55436.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147757373|gb|EDK64412.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147762495|gb|EDK69456.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763733|gb|EDK70667.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147926611|gb|EDK77684.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182628686|gb|ACB89634.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|183571158|gb|EDT91686.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183577579|gb|EDT98107.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|220673718|emb|CAR68214.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225722011|gb|ACO17865.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225724954|gb|ACO20806.1| response regulator [Streptococcus pneumoniae P1031]
 gi|298237782|gb|ADI68913.1| LuxR family response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301793635|emb|CBW36018.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301801302|emb|CBW33982.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302597299|gb|EFL64402.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302635884|gb|EFL66385.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639396|gb|EFL69854.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640613|gb|EFL71015.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302643121|gb|EFL73409.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|306408580|gb|ADM84007.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus pneumoniae AP200]
 gi|306483661|gb|ADM90530.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|332076827|gb|EGI87289.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332077675|gb|EGI88136.1| response regulator [Streptococcus pneumoniae GA41301]
          Length = 210

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 227

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 11/210 (5%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
           + LD     T+R  A     G     L          +D  +      +  R +   +  
Sbjct: 19  LVLDSQDDITVRWQA---ADGQEACELAESQPVDIILMDVQMPRMDGIEATRQVVSGDS- 74

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F      +       + +     D   +   +  +     +I  
Sbjct: 75  -------GARVIVLTTFDNDNYVLGAVEAGASGFLLKDTDPEDLISAVRTVGDSAAVISP 127

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                +      +    +   V       LT RE+E L  I+ G ++ EIA  L IS  T
Sbjct: 128 KATARLLRSIRMEQTPQRREPVELDLPDPLTPRELEILQLIALGLSNQEIADKLYISLPT 187

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++  ++ KT ++ R  A+ +A ++++V
Sbjct: 188 VKTHVGRVLTKTQSRDRVHAVLFAFKHHLV 217


>gi|152965166|ref|YP_001360950.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359683|gb|ABS02686.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 14/235 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++     R   V          + ++     V    +        G     +V       
Sbjct: 1   MSSAPAVRAVVVDDQAMIRAGFSALLDAQPGVEVVGQA-----ADGEEAVEVVTATTPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +  +  D    VL          F       +      + + 
Sbjct: 56  VLMDVRMPVLDGLEATRRILAAGLDPAPRVL------VLTTFDVDDYVFSALQAGASGFL 109

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +     ++       +     +  +  +          +LT RE 
Sbjct: 110 LKDATPEVLVDSVRAVARGDSLLAPGITRRLI---EHFVSTRRRAVDVPAALADLTPRER 166

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I+ G ++ EIA  L I+  T   +++ ++ K   + R  A+       +V
Sbjct: 167 EVLVCIARGLSNQEIAAELFIAEQTTKTHVSRVLTKLGLRDRVQAVVLGYEIGLV 221


>gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 267

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 67/216 (31%), Gaps = 14/216 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +   T  +G                   +  +++  +       +   +   V+  
Sbjct: 47  LFAHIVERTAALGFDFASFGMQMPLPLNNPKIVTRNNYDPEWWNVYLKNNYFQIDPVVIH 106

Query: 105 PTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI--- 153
                     +                 G+   +   T         L     +  +   
Sbjct: 107 VRTSDEAAVWSDNFFSAQPKFWEHAQSFGLRYGWTKATRSSVGTMSQLSFSRRENPLSEQ 166

Query: 154 ---ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              +    + ++  LA          +       EL+ RE + + W ++GKT+ EIA+IL
Sbjct: 167 ELLLKESAMIDLADLAHLHMTECFVLEQFPESKTELSQRERDVIRWCADGKTNAEIAMIL 226

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS ++VN ++ + ++K     ++ A+  A    ++
Sbjct: 227 NISTSSVNFHVLNFIKKLDASNKTHAVMKAASFGLL 262


>gi|315182709|gb|ADT89622.1| two component transcriptional regulator, LuxR family [Vibrio
           furnissii NCTC 11218]
          Length = 197

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     + R        LD  +      +++  +  S  +         + +   +  + 
Sbjct: 24  GDDALDMTRKLKPDVLLLDINMPRMNGLEVLERIQQSNLN--------TSVIMLSMHDSK 75

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I         Y         + + +  +      +      ++              
Sbjct: 76  DYVIRAVKAGAKGYVLKDVSSDELVLAINQVAQGRSYLCPQASDKLLAQFN--------- 126

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    +D  L+ RE + L  I  G  + +IA  L IS  TV  +   I +K    + +  
Sbjct: 127 EKPAERDETLSKRESDVLKAIVSGCGNKDIADTLHISVRTVETHRLRIKKKLGASSTAAL 186

Query: 237 IAYAVRNNIV 246
           +  A+   +V
Sbjct: 187 VKLALEKGLV 196


>gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 578

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 18  QRTSFVSHLPTRSDLLA---RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----F 69
             T  +  L            ++ +D     +  +  L +  G     +           
Sbjct: 355 IVTCLIPTLHKEESFAQDKIHILIVDDQPIISDSLEFLLDKYGF-RVSVANSGAQALKQC 413

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +E++ + ++       +     + +    +   +         F                
Sbjct: 414 EERQPNVVLMDIQMPKMNGITTMKKIKNRWPDTKIIMVTT---FEETSSVSEAIEAGAEG 470

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +     +   + L+   G ++ +D    +           +   +     +ELT R
Sbjct: 471 YVLKSVQPEELVAAIRLVHLGGTMLSQDVATRL---------FKEYSPMPKKPPYELTPR 521

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E++ L  + EG    EIA  L +S  TV NY +SI  K     R  A+  A+
Sbjct: 522 EMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 573


>gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato K40]
 gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato T1]
 gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 254

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 69/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA--------------- 124
           + P D           +   V         P   +  P   T                  
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLH 121

Query: 125 --GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
              M                 L  L      +  +       E GLLA     +      
Sbjct: 122 DSHMTCGLTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|73748496|ref|YP_307735.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669277|ref|YP_001214095.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|289432544|ref|YP_003462417.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73660212|emb|CAI82819.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270225|gb|ABQ17217.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
 gi|288946264|gb|ADC73961.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 224

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  +          L  R   +  +                    G     +  
Sbjct: 5   QMIKVLLADDHVIVREGTRELIQRESGMMVVGEASD---------------GVEAVEMSM 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  + +           L     L    + +    +     
Sbjct: 50  KVHPDVVVMDIAMPRLNGIEATKQIKQL--------LPTTAILILTAYESEQYILAILEA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +        ++   +  ++    ++       +      +A   +           
Sbjct: 102 GAAGFLLKNVKGTQLLEAIRSVYAGESVLQPSTTRRVIDQLINKAAKTEELSAVNP---- 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L   + G ++ +IA  L +S  T+  ++++I +K +  +R+ AI Y ++   
Sbjct: 158 LTEREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRGW 217


>gi|260776036|ref|ZP_05884931.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607259|gb|EEX33524.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 212

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 64/240 (26%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  + +               +  +      +    ++  LT             
Sbjct: 4   PIKVVIVDDHQVVLDGFIARLQLEPEIEVIGSASNGLEAIEKVKELT------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D  R +           L     L   +       +      
Sbjct: 51  --PDVVLMDVSMPLMNGIDATRLIKEE--------LPEIKVLMLTMHDNREYIMKVMQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        R+   +  ++             +           +       K   L
Sbjct: 101 AVGYMLKEICARRMVQAIKTVYQGSTYFCESVTQTL---------FSQEVIPAAQKPNPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE   L  ++EG +S +IA +L IS  TV  +  +I +K    + +    YAV   ++
Sbjct: 152 SRREEAVLKLVAEGNSSKKIAALLSISYRTVETHRQNIKQKLDLHSTAELAKYAVEQGLL 211


>gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
 gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus
           JCSC5402]
          Length = 216

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    D +  +                    G   F +V   
Sbjct: 1   MKIVIADDHAVVRTGFSMILNYQDNMEVVATAAD---------------GMEAFQMVSQY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +    P      +A  +  + +   +        ++              
Sbjct: 46  KPDVLIMDLSM----PPGESGLIATGKIKEAFPETKIL---ILTMYDDEEYLFHVLKNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  ++ +G  I       +     +       Y         LT
Sbjct: 99  NGYILKNAPDEELIKAVRTVYQEGTYIDPKMATSLVHELIH---HDTEYSAKNDHLKILT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + EIA +L +S  TV  + A IM K   K++   + YA++  ++
Sbjct: 156 KRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPELVEYALKKKLL 214


>gi|326445496|ref|ZP_08220230.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 244

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 12/228 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D L     L   +     +  + E   GA    L +        +D  +   
Sbjct: 19  VIRVLIADDQLLVRRGLVLMLGPEPSVEVVGEAADGAQAVELAQRLRPDVIIMDIRMPVL 78

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +           +     L    F      +         +         + 
Sbjct: 79  DGIAATEQLTRQ--------VPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELV 130

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWIS 198
             L ++     ++    L  +            +     G       LT RE E    I+
Sbjct: 131 TALHVVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIA 190

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  +  IA  + +S +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 191 AGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 238


>gi|297584895|ref|YP_003700675.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297143352|gb|ADI00110.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 219

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 30/242 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  I+L  +     S + H+         +   D                G S   +   
Sbjct: 2   KTRIMLVDDHPVFRSGLKHILCTEADYHVIAEADD---------------GESAIEMAAE 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      ++ R +           +     L   ++             
Sbjct: 47  ANPDIIIMDISMPGLDGIEVTREIKRK--------IPDIRILMLTMYADEAFLKESLDAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDF 184
            + Y         +   + L+      I    + ++     Y AN  +         +  
Sbjct: 99  ASGYVLKRAVDTELVHAVKLVMNGEHYIYPTLIPKL-----YHANQPQQDAVSPDSNQAV 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L +I+ G T  EI+  L IS  TV+ Y   +M K  +K +S  + YA+++N
Sbjct: 154 ELSQREQEVLKYIALGYTQKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVRYALKHN 213

Query: 245 IV 246
           I+
Sbjct: 214 II 215


>gi|307151536|ref|YP_003886920.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306981764|gb|ADN13645.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 232

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 72/249 (28%), Gaps = 25/249 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + L  + +     +         +  +            +               
Sbjct: 1   MSKIRVALIEDHDLTRVGLRTALKNYSEIEWVGEASNGKQGLQLLQETV----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L +    S   +   + +        +  +  E +   A
Sbjct: 50  ----PDVAIVDIGLPGVDGIELTKLFKTSVDKQKEGLTKIL---ILTLHDSEAEVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-------ANMFKSYD 177
              + YC     +  +   +         +       +                + +   
Sbjct: 103 AGADSYCMKNISIELLLEAIKATQEGNSWLDPAIARIVISQVQSPKIKIPKDLELLEPES 162

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G+ + LT RE+E L  I +G ++  IA  L I+  TV  ++ +I+ K     R+ A 
Sbjct: 163 NVRGETYSLTERELEVLQLIVDGYSNAAIADKLFITVGTVKTHVRNILNKLCADDRTQAA 222

Query: 238 AYAVRNNIV 246
             A+R  +V
Sbjct: 223 VRALRAGLV 231


>gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1]
 gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1]
          Length = 220

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + + V G      V   L     +D  +     
Sbjct: 3   RVLIADDQQMVRQGFAVLLNTQPDIRVIGQAVDGLDAITRVADLLPDVVLMDIRMPELGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F                +        ++   
Sbjct: 63  IEATRRITA--------ATPGTKVLVLTTFDLDEYVYEALRAGACGFLLKDASADQLAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    +   +  +       +  +LT RE E +  I+ G ++
Sbjct: 115 VRVIAAGDALLAPGITRRLIAEFSRLDDRPR--APLRQRIEDLTERETEVVALIAHGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  ++  I+ K   + R+ A  +A  + +V
Sbjct: 173 AEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESGLV 215


>gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus
           thermophilus LMG 18311]
          Length = 214

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 78/240 (32%), Gaps = 34/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++N++L  + E     +         +  +   +                G     L   
Sbjct: 4   KINVILVDDHEMVRLGLKSFLNLQGDVELVGEAEN---------------GREGVDLALE 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +L    A  E  K +   +         +    +        
Sbjct: 49  LRPDVVVMDLVMP-----ELDGVQATLELLKEWPEAKIL---VLTSYLDNEKIYPVIEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T   A I   +  ++     I  +             N  K +D H     +L
Sbjct: 101 AKGYMLKTSSAAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPNLHDDL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 150 TARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
 gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200]
          Length = 451

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 76/244 (31%), Gaps = 23/244 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFL 62
            E    T  +       D L R++ +D        +  L +             G     
Sbjct: 219 EEGMLVTCTIPRQTEIKDGLIRLLIVDDQPFVRESLRTLLDRYEDLNVVGLAEDGNQAID 278

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +        +  ++         F    + +  
Sbjct: 279 LCGRLQPHVILMDLDMQHMDGIEATKKIKQQ-----WPHIRILIFTT---FQDTEQALES 330

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   + +   +   + L+   G +I +    +I      + +  K        
Sbjct: 331 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKI----FEKFDEQKETPQSKAT 386

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +ELT RE+E L  +++G     IA  L +S  TV NY ++   K     +  A+  A+ 
Sbjct: 387 AYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALE 446

Query: 243 NNIV 246
             I+
Sbjct: 447 IGII 450


>gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 243

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 66/235 (28%), Gaps = 17/235 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD--SIVSSDWPFD 85
                +  +   +        +       G           F        ++ +  +P  
Sbjct: 3   RLETFMDGVSRAETPAQIWDAVLPFAHSFGIDKVSYHNTPAFGAVPGSETAVFARGFPES 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP-------------AGMDNRYCS 132
            +         +   +         P   +    +TP               G+ +    
Sbjct: 63  WLCDYVNERLYEVDPIPAYAAHATEPFRWSDIAKLTPLTAPETDFLKRLLQQGLGDGLAL 122

Query: 133 LTFDVARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             F        + +        +    + E+   A      + +       +  LT RE 
Sbjct: 123 QVFGPNMRNGYVGVGFASSDPDLSGGDIRELQAAAQAAHLRYCTLVPVATPEA-LTPRER 181

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L WI+ GK++  IA ILG+S +TV+  +  I  K     R+ A    +   ++
Sbjct: 182 EVLGWIARGKSNSVIAEILGVSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGLI 236


>gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 254

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 69/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTLDQQMDCALLLASDMGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA--------------- 124
           + P D           +   V         P   +  P   T                  
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLH 121

Query: 125 --GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
              M                 L  L      +  +       E GLLA     +      
Sbjct: 122 DSHMTCGLTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|229493356|ref|ZP_04387145.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229319672|gb|EEN85504.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 220

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 10/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +S    +  + +   G      V         +D  +      D  
Sbjct: 8   ADDQAMVRQGFGALLSAQSDISVIGDAPDGKIAVAEVARLRPDVVLMDVRMPEMNGLDAA 67

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +  +  +           L    F          +   + +         +   + ++
Sbjct: 68  RQILSAGWE------PPVRVLMLTTFDIDDYVYEALSVGASGFMLKDAPAEELIRAVRVV 121

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++       +    A   +   +          LT RE E L  I+ G ++ EIA
Sbjct: 122 AEGQALLAPTVTRRLI---ADVTSRRAAPRARPAALDALTPREREVLELIARGLSNVEIA 178

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 179 ERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217


>gi|149187522|ref|ZP_01865819.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1]
 gi|148838402|gb|EDL55342.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1]
          Length = 210

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 34/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  ++L  +       +  L +  D    +                    G+    L 
Sbjct: 1   MSECKVMLVDDHPLMRRGIGQLLSFEDDFGIVAEASN---------------GSDAIALA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +      D ++ +   +   +   +   T    P      +      
Sbjct: 46  KEHEPDLILLDLNMKGMSGLDTLKALREDDFQGH---IVILTVSDIPA-----DIDALVK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   I   L  L    +                     +          
Sbjct: 98  AGADGYLLKDTEPDEIIELLRGLTSGNKAFSSA-----------IEKYLEERANTSDVFA 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE++ L  +++G  + +IA  L IS +TV  ++ S++RK    +R+ A    +  
Sbjct: 147 TLTEREMQILQEVAKGFRNKQIADRLFISESTVKVHMKSLLRKLQVPSRTAATILYLER 205


>gi|304409402|ref|ZP_07391022.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307303760|ref|ZP_07583513.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304351920|gb|EFM16318.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306912658|gb|EFN43081.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 216

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   +++ L  + +     ++ L   SD +  +   +       ++           
Sbjct: 1   MDTQNNIISVGLVEDQQLVRQGIASLLAISDNIRVLWQAEDGQDALSQL----------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +       D  + +     +++ +  S              +    F      +
Sbjct: 50  ----ANNPVDVLLSDIRMPNLDGIAMLKQIRQSANS--------LPVIMLTTFDDSELFL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N +      + ++   +  +   G +I    L ++       +    +  V  
Sbjct: 98  NSLQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQM-------SEPKPAPSVGV 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   
Sbjct: 151 TRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKG 210

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 211 LQLALI 216


>gi|126173479|ref|YP_001049628.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|125996684|gb|ABN60759.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 216

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 87/246 (35%), Gaps = 30/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   +++ L  + +     ++ L   SD +  +   +       ++           
Sbjct: 1   MDTQNNIISVGLVEDQQLVRQGIASLLAISDNIRVVWQAEDGQDALSQL----------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +       D  + +     +++ +  +              +    F      +
Sbjct: 50  ----ANNPVDVLLSDIRMPNLDGIAMLKQIRQNANS--------LPVIMLTTFDDSELFL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N +      + ++   +  +   G +I    L ++       +    +  V  
Sbjct: 98  NSLQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQM-------SEPKPAPSVGV 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  L+ RE E L++++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   
Sbjct: 151 TRNELLSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKG 210

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 211 LQLALI 216


>gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
 gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR
 gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya
           dadantii 3937]
          Length = 250

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +  +    D ++ S++P + V     +       V+  
Sbjct: 15  IQSYLNRKLKSYGDPKYAYLIMNKKKPT--DVVIISNYPTEWVDIYRNNNYQHIDPVILT 72

Query: 105 PTELFCPVFHTLPENITP------------PAGMDNRYCSLTFDVARIRIGLMLL----- 147
                 P        I+                + N Y  +  D       L  +     
Sbjct: 73  AINKISPFSWDDDLVISSKLKFSRIFNLSKDYDIVNGYTFVLHDPGNNLAALSFMIEEHR 132

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMF--------KSYDVHWGKDFEL-TGREVECLTWIS 198
             +   I+++   ++ +L                ++ +    ++ +L + RE E L W S
Sbjct: 133 SEELEEIIQNNKDKLQMLLISAHEKLTSLYREMSRNRNNSKSQEADLFSQRENEILHWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 193 MGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           ATCC 23344]
 gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei
           SAVP1]
 gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 668]
 gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia
           pseudomallei 1106a]
 gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
 gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 23344]
 gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei SAVP1]
 gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 668]
 gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1106a]
 gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 305]
 gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei FMH]
 gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei JHU]
 gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei 2002721280]
 gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 406e]
 gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei ATCC 10399]
 gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1655]
 gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 576]
 gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei MSHR346]
 gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia mallei GB8 horse 4]
 gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family
           [Burkholderia pseudomallei 1710a]
          Length = 241

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLLA +            +      +   +        +   +      S++P    R
Sbjct: 9   AEDLLAGLDSARSEEEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWKR 68

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI 140
               +       +L        PV                    G+   +   +FD    
Sbjct: 69  RYVEAGFLDVDPILAHGRRSQQPVVLAETLFASAHQMWVEAQSFGLRFGWAQSSFDAYGG 128

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+  +  +   +      R+  +   A           +    +  LT REVE L
Sbjct: 129 MGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 189 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|258620181|ref|ZP_05715220.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
 gi|258587539|gb|EEW12249.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
          Length = 216

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     +  +  +         T   G     LV+        +
Sbjct: 6   DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVV-----ATASNGLEALELVKLHQPDVVLM 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    +           +     L   +       +         Y    
Sbjct: 61  DVSMPIMNGIEATCLIKEE--------VPNTKVLMLTMHDNREYIMQVMQAGAMGYMLKE 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       K   L+ RE   L
Sbjct: 113 ISALKMVQAIKTVNQGATYFCESTTSTL---------FSQEILPTATKPNPLSRREEAIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+++ ++
Sbjct: 164 RMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDIHSTAELAQYALQHGLL 215


>gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 229

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 23/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  + E     V  +    + +  +                    G     LV 
Sbjct: 8   QPIRVLLVDDQELFREGVRVIVDAQEGMGVVGTAAD---------------GLEAVALVE 52

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R + L   ++     +    +    F+      T    
Sbjct: 53  ELEPDVVLMDIRMPDMDGVEATRQIFL--PERAARRQRPVRVVVLTTFNLDDRAATAIRH 110

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++    L  +           +S          
Sbjct: 111 GASGFLLKGTTPVMLADAIRTVHAGNAVLAPTDLTTL------LDGRLRSQAPLPPAYLT 164

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E E  T ++ G ++ EIA ++ +S +TV  ++ +I+RK   + R   + +A  + +
Sbjct: 165 LTDKEREVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRKLGLRDRVQIVVFAYEHGL 224

Query: 246 V 246
           V
Sbjct: 225 V 225


>gi|306825821|ref|ZP_07459160.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432182|gb|EFM35159.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 210

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQEDVEVVGEAANGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 222

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 63/231 (27%), Gaps = 15/231 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++  +  +             G     + R        +D  
Sbjct: 2   IRVLLVDDQALLRTGFRLVLEAETDIEVVGEA-----ADGVVAEQMARSLHPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +           +     L    F       +      + +       
Sbjct: 57  MPVRNGIEATASIVA--------AMPAVRVLILTTFDLDEYAFSGLRAGASGFLLKDTRP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAA--YQANMFKSYDVHWGKDFELTGREVECLT 195
           A +   +  +     ++       +  L          +       +  ELT RE+E L 
Sbjct: 109 ADLVDAIRTVASGDAVVSPRITRRMLELFGEYLPQGGDRDTSASDPRLAELTPRELEVLV 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG ++ EIA    +S  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 169 AVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGLRDRVQAVVLAYETGLV 219


>gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 242

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 16/238 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD---SIVSS 80
            HL     +L  +            +       G S+ +          K      +++S
Sbjct: 5   KHLDRTFSVLRDLERAATPDEIARLLVEAFSRYGVSYIMAGIVPDPGLPKRRHAGFVLAS 64

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRY 130
             P    R         +   ++R      P                 N     G+    
Sbjct: 65  TMPEGWARRYVTQGYALHDPTVRRLCTTATPFDWNAVLPDTPTAGRVMNEAGEFGIRAGI 124

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTG 188
                 +     G+  +  +   I       + L+A Y        +          L+ 
Sbjct: 125 TVPFVTLDGEPGGIS-VSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPARLSP 183

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L W +EGKT  EI +++GI+   V+ ++ S   K  T  R+  +A A+R+ ++
Sbjct: 184 REREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGLI 241


>gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal
           transduction system [Streptomyces lividans]
          Length = 225

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 16/231 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R               R+I +   +             G     +V         +D 
Sbjct: 4   PVRVVVADDQALVRTGF-RLILMADGIDVVAEA-----ANGEEAVEVVLRTRPDIVLMDI 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +     D        P  +    F          A   + +      
Sbjct: 58  RMPELDGLEATRRILTGAPD-------APRVIMLTTFDLDDLVYAALAAGASGFLLKDVT 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLT 195
              +   + L+     ++       +  +  +      + +    +D   LT RE+E L 
Sbjct: 111 PEHLVAAVRLVRTGDALLAPAITRRL--VERHAHTTPPAPNTTAHRDLQTLTPRELEVLQ 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ E+A  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 169 LLAQGLSNAELAERLYLSETTVKTHVGRILAKLQLRDRVQAVVTAYETGLV 219


>gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 272

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 19/229 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVSSDWPFDLVRCMALSE 94
           +        W   +  +   +G   +L+       ++    + + + +P   +       
Sbjct: 26  LAKDANRCDWERLLNKVLRQLGFGSYLISLGPVAPRDTDPLAGLITTFPKRWLEHYRCDG 85

Query: 95  KDKYYNVLQRPTELFCPVFHT-----------LPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   +L+       P+F                      G+ +           +R  
Sbjct: 86  LIEIDPILRHCRRELVPLFWDSERRRARGRSRHFWEQREQHGLRSGVSIP-LRYEMLRGT 144

Query: 144 LMLLFPKGRI-----ILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWI 197
           L + F   +I          ++++ +L  Y     +           +LT +E++CL W 
Sbjct: 145 LSVAFDDTQITEQKGFSNPAVYQLFMLIPYLLAGIRHQLQRPAQPRQDLTPKEMDCLYWA 204

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SEGKT+ EI+ IL  S  T++ ++ +  RK  + +R  A++ AV   +V
Sbjct: 205 SEGKTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACGLV 253


>gi|326329878|ref|ZP_08196194.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325952315|gb|EGD44339.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 221

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +   S    + +  D ++ +                    GA      R  
Sbjct: 2   IRVLLADDQQLVRSGFRLILSMEDDISVVGEASD---------------GAEAIAKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 +    F          A   
Sbjct: 47  RPDVILMDVQMPGTDGIEATRTVVAEG---------HAKVIILTTFDRDDYLFDALAAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + +     D   +   +        ++  +    +        +          K+ +L 
Sbjct: 98  SGFLLKNADPDSLAEAVRAAADGHALLAPEVTMRVI---GRVTSHNAPTAPRPPKELDLL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I EG +++EIA  L ++  TV  ++++ + K   + R   + +  R+ ++
Sbjct: 155 TAREREVLLLIGEGLSNNEIARRLYLTEATVKTHVSACLAKLQLRDRVQTVVFIHRHGLL 214


>gi|323491776|ref|ZP_08096951.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323313911|gb|EGA67000.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 210

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 34/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  ++L  +       +  L +  +    +                    GA      
Sbjct: 1   MTECRVLLVDDHPLMRRGIQQLLSFEEDFEVVAEASN---------------GADAVAKN 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D +  +           +   T    P      +      
Sbjct: 46  HEYKPDLVLLDLNMKGMSGLDTLGALRADG---CDAAIVILTVSDSPA-----DIEAIVK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L +     +   R+        A Y  +     +       
Sbjct: 98  AGADGYLLKDTEPDELVELLRVSLQGNKAYSREV-------AKYLEDR----ENSTDIFD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 147 ELTDRELQILKEVAKGFRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|294628934|ref|ZP_06707494.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292832267|gb|EFF90616.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 226

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 8/224 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA+   L R        +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASEGAAAVRLAREQRADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     +   +   
Sbjct: 64  LAATRMISA------DPALAHVRVVILTTFEVDDYVVQALRAGASGFLGKGSEPEELLSA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKT 202
           + +      ++       +      Q +          G+   LT RE E L  ++ G +
Sbjct: 118 IRIAAQGEALLSPVATKGLIARFLAQGDADDGRDPARSGRLEALTVREREVLVQVAGGHS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 NDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 221


>gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yhcZ
 gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 214

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 16/218 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    +    +  + E   G     ++         +D  +        +
Sbjct: 6   ADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAI 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           +                   +    +      I         Y     +   +      +
Sbjct: 66  KKAIQQ--------FPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKT-RQV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +    +  +        +M   +D    K ++LT RE + LT I+ GK++ EIA
Sbjct: 117 HGGEYKLSTAIMPHV------LTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L IS  TV  ++++++ K     R+ A  +AV+ N+
Sbjct: 171 AALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 208


>gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
 gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella
           denitrificans ATCC 33394]
          Length = 224

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 76/240 (31%), Gaps = 29/240 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ I+L  +     S +  L  R      +                    G S   L+ 
Sbjct: 3   EKIRILLIDDHTLFRSGIKALLARQTDCEVVGEAAD---------------GLSGLKLIE 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +          V    T L   +     +       
Sbjct: 48  QTRPDVVLLDLDMPVMNGRETLAQIMS--------VHPEQTVLMLTISEDGDDLTECMRL 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +   +    I   +    +        ++ + +        E
Sbjct: 100 GARGYLLKNIHADFLIEAVKKAYHGDNIFSPEMTARL------VQSLIRPHQPESTPLDE 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +S G ++  IA  L ++ +TV  ++ +I+RK    +R  A  YAV++NI
Sbjct: 154 LTARELEILGHLSAGHSNKIIARHLDLAESTVKVHVQNILRKLELDSRVQAAVYAVQHNI 213


>gi|226305875|ref|YP_002765835.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184992|dbj|BAH33096.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 220

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 67/240 (27%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + +  +          L +    ++ +            +  L              
Sbjct: 2   PITVFIADDQAMVRQGFGALLSAQPDISVIGDAPDGKIAVAEVARL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D  R +  +  +           L    F          +  
Sbjct: 48  -RPDVVLMDVRMPEMNGLDAARQILSAGWE------PPVRVLMLTTFDIDDYVYEALSVG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   + ++     ++       +    A   +   +          L
Sbjct: 101 ASGFMLKDAPAEELIRAVRVVAEGQALLAPTVTRRLI---ADVTSRRAAPRARPAALDAL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+ G ++ EIA  L ++  TV  ++  ++ K   + R+ A+  A  + +V
Sbjct: 158 TPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGLV 217


>gi|254390921|ref|ZP_05006131.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704618|gb|EDY50430.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 242

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 12/228 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D L     L   +     +  + E   GA    L +        +D  +   
Sbjct: 17  VIRVLIADDQLLVRRGLVLMLGPEPSVEVVGEAADGAQAVELAQRLRPDVIIMDIRMPVL 76

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +           +     L    F      +         +         + 
Sbjct: 77  DGIAATEQLTRQ--------VPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELV 128

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWIS 198
             L ++     ++    L  +            +     G       LT RE E    I+
Sbjct: 129 TALHVVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIA 188

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  +  IA  + +S +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 189 AGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 236


>gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Streptococcus pyogenes
           M49 591]
 gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS8232]
 gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes
           NZ131]
 gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 213

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  + E     +         +  +                    G     L 
Sbjct: 1   MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASN---------------GREGVDLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LALKPDVLVMDLVMPELGGVEATLEVLKKW--------KEAKVLVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D H     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVSKGELAIETE-----------VDKKIKAHDQHPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 225

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 9/216 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L +         D  +     
Sbjct: 4   RVLIADDQELVRTGLRTLLDAQDGIEVVGEAADGQEALDLAQSLRPDVCLFDIRMPRVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A +  +    ++          F                +       A +   
Sbjct: 64  IEATRILAGAGVENPMAIV------VITTFDLDEYVYGALRAGARGFLLKDAGSALLGQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I  +    +  L A+        +        LT RE E L  ++ G ++
Sbjct: 118 IRCAANGDALIAPNVTVRL--LEAFAGQPSPVGEPIAQPTEPLTAREEEVLATVARGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EIA  L I+ +TV  ++AS+M K   + R     +
Sbjct: 176 SEIASELHITVSTVKTHLASLMTKLGVRNRVEIAIW 211


>gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 214

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 78/240 (32%), Gaps = 34/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++N++L  + E     +         +  +                              
Sbjct: 4   KINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGRD--------------------GI 43

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           DL  E + D +V      +L    A  E  K +   +         +    +        
Sbjct: 44  DLALELRPDVVVMDLVMPELDGVQATLELLKEWPEARIL---VLTSYLDNEKIYPVIEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T   A I   +  ++     I  +             N  K +D H     +L
Sbjct: 101 AKGYMLKTSSAAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 150 TARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|152968206|ref|YP_001363990.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151362723|gb|ABS05726.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 67/241 (27%), Gaps = 26/241 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              ++L  +D    + +  + + +D +  +   +                GA     V  
Sbjct: 13  PTRVLLVDDDALVRAGLRMILSSADDIEVVGEAEN---------------GAQAVEGVAA 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +         + +            Q P+ +    F             
Sbjct: 58  HRPDVVLMDVRMPVMDGLTAAKAITERP--------QAPSVVMLTTFDLDEYVFQALQAG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFE 185
              +         +   + ++     ++       +  +  Y A+           +   
Sbjct: 110 ATGFLLKDTPPRELVAAVRIVAAGEAMLSPTVTRRL--VGHYAADAVNPRRREAAERLTT 167

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +  G ++ E+   L +S  TV  +++ ++ K     R      A    +
Sbjct: 168 LTEREREVLACVGRGMSNAEVGKELFMSEATVKTHVSRLLTKLQAHNRVQVAIVAHDAGL 227

Query: 246 V 246
           +
Sbjct: 228 L 228


>gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia
           enterocolitica W22703]
          Length = 236

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                V   P     + +++ LD                G+   +           LD  
Sbjct: 32  HTIMIVDDHPLMRRGIKQLLELDSNFDVVAEAN-----CGSDATIEAAKCQPDVILLDLN 86

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D ++ +     D           +   V     +         + Y     + 
Sbjct: 87  MKGMSGLDTLKALRNEGID--------ARIIVLTVSDARSDVYAMIDAGADGYLLKDSEP 138

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L      +                     S D       ELT RE++ L  +
Sbjct: 139 EILLENIRLASKGENVFSDAVT-----------QYLSSRDEQVNPFSELTERELDVLQEV 187

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 188 ARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 233


>gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 209

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 79/239 (33%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D I+      D+    A ++  K    ++         F    E         
Sbjct: 48  -----KPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLM---LTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     I   +        +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSAKDIADAVHKTSSGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
 gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus
           1942]
          Length = 596

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 24/239 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDL 68
           +  +  L   S+   R+  +D        +Y + +             G     L     
Sbjct: 369 SCVLPKLEQSSNERIRLCIVDDHSFIRESLYTILDEQKDLQVVGMAEDGEQAVELCGRLN 428

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +       + +        +  ++         F  +           +
Sbjct: 429 PDLVLMDLEMPNQDGIRATKIIKGK-----WPDIRVLILST---FQDIERAKEIIRSGAD 480

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELT 187
            Y   + +   +   + L++    +I +D    +        +  +   + +  K++ LT
Sbjct: 481 GYLLKSIESRELAESIRLVYRGATMIDQDLFHRMW----DGTDEAEPSGLKFDGKEYGLT 536

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A    ++
Sbjct: 537 KRELEVLNLLSQGIRYKTIASELYLSNGTVRNYASTLYDKLGVKNREEAVQKARDTGLL 595


>gi|256787861|ref|ZP_05526292.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289771746|ref|ZP_06531124.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289701945|gb|EFD69374.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 231

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 63/229 (27%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A ++     +             G     L R        +D  
Sbjct: 3   IRVLLADDQNLVRAAFALLVASAPDMEVVGEAGT-----GRQAVELARARRADLVVMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +A          L     L    + T    +       + +       
Sbjct: 58  MPDLDGIEATRLIAA------DEDLAGVRVLVLTTYDTDENIVEALRAGASGFLVKDTRP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +     ++       +        +              L+ RE + LT +
Sbjct: 112 AELLEAIRTVTAGDALLSPGPTARLIERFLRSPSALHPPGSGPD---CLSERERQVLTLV 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G  + EIA  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 169 ARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 217


>gi|111220014|ref|YP_710808.1| putative protein-glutamate methylesterase [Frankia alni ACN14a]
 gi|111147546|emb|CAJ59199.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a]
          Length = 211

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 13/206 (6%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +D      +   A T   GA    L R        +D  +      + +R +A       
Sbjct: 3   VDSAPDLAVIAEAGT---GAQAVRLARHLRPDVVLMDIRMPIMDGLEAMRIIAA------ 53

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                    L    F           G  + +         +   + ++     ++    
Sbjct: 54  DPGTAATRVLVVTTFDQDEHVFAALRGGASGFVLKDTRPEDLLAAIRIVAAGDALLTPSV 113

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              +    A +       +        LT RE E L  ++ G ++ EIA  L +   TV 
Sbjct: 114 TRRLIAEFAQRPQRPVRGEEL----TRLTEREREVLVQVAAGLSNSEIARRLFVGVTTVK 169

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244
            +++ ++ K   + R+  +  A  + 
Sbjct: 170 THVSRLLTKLGARDRAQLVVAAYESG 195


>gi|320547873|ref|ZP_08042156.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447413|gb|EFW88173.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 214

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 36/242 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLV 64
           Q++ ++L  + E                   + L    +    +  + E   G     L 
Sbjct: 3   QKIRVILVDDHEMVR----------------LGLKSFFNLQPDIEVVGEAGNGIDGIKLA 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 47  LELKPDVVVMDLVMPEMSGVEATLKLLKEW--------KEAKILVLTSYLDNEKIYPVIE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D       
Sbjct: 99  AGAKGYMLKTSSAAEILNAIHKVARGDLAIETE-----------VDKKIKAHDQKPELHE 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +++
Sbjct: 148 DLTARERDILKLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|269794179|ref|YP_003313634.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269096364|gb|ACZ20800.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 236

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 5/224 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    L+         +D  + +   
Sbjct: 12  RVAIVDDQQLLRAGFRMVIDSQPDLEVVVEAGDGAQAVRLLTDHPVDVVLMDVRMPTMDG 71

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +    + +     + P  +    F      +       + +         +   
Sbjct: 72  LVATAQLTALWEARGD---EAPRIIVLTTFDLDEYALEAIRSGASGFLLKDAPPEEMLAA 128

Query: 144 LMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +     +I       +   L                    LT RE E L  ++ G+ 
Sbjct: 129 IRTVHSGDAVIAPSTTRRLLDRLVTTLPEEQLVDSGQASAVDSLTEREREVLVLMARGRA 188

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  T+  ++  I+ K   + R  A+  A    +V
Sbjct: 189 NQEIASDLFVAEATIKTHVGRILSKLGARDRVQAVVTAYETGLV 232


>gi|302553186|ref|ZP_07305528.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470804|gb|EFL33897.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G      +R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGVEALQALRSTEVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  L    F       +      + +         +   
Sbjct: 64  VETTRRICAD----TDP----PKVLILTTFDLDEYAFSGLKAGASGFMLKDVPPGELLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     ++       +  L  +   +  +      ++ E LT RE E +  +++G +
Sbjct: 116 IRSVHSGDAVVAPSTTRRL--LDRFAPMLPGTATQPQHQELERLTDREREVMVLVAQGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 174 NGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217


>gi|239983739|ref|ZP_04706263.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291455547|ref|ZP_06594937.1| two component transcriptional regulator [Streptomyces albus J1074]
 gi|291358496|gb|EFE85398.1| two component transcriptional regulator [Streptomyces albus J1074]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 67/245 (27%), Gaps = 27/245 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   +    I++  + E   S    +      ++ +                    G + 
Sbjct: 1   MTTHLGPTRILIADDQEDVRSGFRLILGSQPDMSVVGEAAD---------------GLTA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L R         D  +      +L R +A         +      L    F       
Sbjct: 46  VDLARALRPDLVLADIRMPGVDGLELTRRLAGPGVP--DPI----RVLVVTTFDHDSYVR 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           T        +         +  G+        +I       +            S     
Sbjct: 100 TALHDGACGFLLKRSGPGVLIEGVRAAMAGDILISPQLTVRLLQTLT------PSAPAPP 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E    +++G T+ EI + L IS  T   +IA+I  K   + R G  A+ 
Sbjct: 154 TRLTPLTARETEIARLVAQGHTNAEIGMTLSISPGTAKTHIANIQTKLKARNRVGIAAWT 213

Query: 241 VRNNI 245
             N +
Sbjct: 214 WENGL 218


>gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 215

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 55/215 (25%), Gaps = 8/215 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLVRCM 90
           M+ +D    W   +       G                        +V       +    
Sbjct: 1   MMVVDDHPMWRDAVARDLAAAGFDVVATAGDGPEAVRRAGAAAPHVLVLDLNLPGMPGVQ 60

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              E       L+              + +         Y   +     +   +      
Sbjct: 61  VCKELVGANPALRVL---VLSASGEHADVLEAVKSGATGYLLKSAGAQELIDAVRRTAAG 117

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +        +       A           K  +LT RE E L  +++G +  +IA  L
Sbjct: 118 DPVFTPGLAGLVLGEYRRLATDPAPAAPDEPKAPQLTDRETEVLRLVAKGLSYKQIAERL 177

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IS  TV N++ + + K     R   + YA+   +
Sbjct: 178 VISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|71280792|ref|YP_268003.1| putative nitrate/nitrite DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71146532|gb|AAZ27005.1| putative nitrate/nitrite DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
          Length = 206

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       + H  +  D +  +   +        + +L               
Sbjct: 2   IKVLLVDDHPLFREGLKHRLSLDDCIEVVGEAENGKQALELIKSL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    +D  +       ++  +   + D           L   +       +       
Sbjct: 47  DFDIVLMDINMPEMDGMYVLELIKEQDLD--------CKVLMLSMHDNKEYILGAMRHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       A +   +  +         +      +L+   A   +            T
Sbjct: 99  DGYILKDVPGAELIEAIKKVISGKHYFSSEVT---EILSKELAGEQRGIV---------T 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   L  IS+G  +  IA  L +S  TV  +  +I +K    +  G + YA+   +
Sbjct: 147 RREQLVLRLISQGLNNKRIAQELNVSVRTVETHKRNIKQKLGIDSTVGLMRYAIDYGL 204


>gi|307710534|ref|ZP_07646970.1| response regulator [Streptococcus mitis SK564]
 gi|307618687|gb|EFN97827.1| response regulator [Streptococcus mitis SK564]
          Length = 210

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEATNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PESKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSAGELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|238020554|ref|ZP_04600980.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
 gi|237867534|gb|EEP68540.1| hypothetical protein GCWU000324_00440 [Kingella oralis ATCC 51147]
          Length = 224

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 72/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI L  +     S +  L +R    + +                    G S   LV   
Sbjct: 3   INIALIDDHTLFRSGIKALLSRQTEFSIVGEASD---------------GFSGVKLVEQT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +  S  ++          +   V     +         
Sbjct: 48  RPDVVLLDLNMPQMNGRDALAQILSSRPEQ--------KVIMLTVSEDSEDLTECIRLGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   +  +         +    +                      +LT
Sbjct: 100 SGFLLKNINANYLIESIKKVVNGDNAYSPEMTARL-------VQSLIRPAQAESALSQLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE+E L  ++ G ++  IA  L ++ +T+  ++ +I+RK    +R  A  +A+++
Sbjct: 153 PRELETLGHLAAGYSNKAIAKNLNLAESTIKVHVQNILRKLKLDSRVQAAVFAIQH 208


>gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 58/222 (26%), Gaps = 21/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L    +       L E   GA    L          +D  +      
Sbjct: 5   LLIADDHPIVRDGLRGIFTGERGFEVLGEAAHGAEAVTLAEALKPDVVLMDLRMPGTDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +A                L    + T  + +         Y         +   +
Sbjct: 65  AAITELARLGNP--------ARVLVLTTYDTDSDVLPAIEAGATGYLLKDSPREELFRAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       I               +       L+ RE+E L  ++ G T+ 
Sbjct: 117 RAAARGEAVLSPAVASRIM------------GQMRAPAQEPLSQREIEVLNLVARGSTNK 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E A  L IS  TV  ++     K   K R+ A+A A    ++
Sbjct: 165 EAAKKLFISEATVKTHLLHAYAKLGVKDRAAAVAVAFERGLL 206


>gi|229065659|ref|ZP_04200888.1| Response regulator [Bacillus cereus AH603]
 gi|228715632|gb|EEL67427.1| Response regulator [Bacillus cereus AH603]
          Length = 597

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 90/248 (36%), Gaps = 13/248 (5%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLL---ARMIPLDCTVSWTMRMYALTEY------VGAS 59
            + ++ E EQ T  + ++P +++      R++  +  V  T  +  + +       VG +
Sbjct: 353 TVSVHSEPEQGTFVICNIPLQTEPAHDTIRLLLGNDQVIITDSLKQILDQHTDFNVVGTA 412

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                  +  +  + D ++       +     L E  + +  ++     F   F    + 
Sbjct: 413 RDGGEALEHCERSQPDIVLMDISMQGMSGIETLLEMKQRWPDMKVV---FMTTFEDSLQA 469

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            T        Y   +     ++  L L++  G  I +     I      Q    +     
Sbjct: 470 ATALEHGAEGYMLKSIHPREMKEALKLIYNGGIWIDQSVATRIFEEMKSQREQLEKIGSS 529

Query: 180 WGK-DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                + LT RE+E L  +S G     IA  L +S  T+ NY +++  K +   R  AI 
Sbjct: 530 QENFPYGLTKREMEILEHLSGGLRYKSIAAKLFLSEGTIRNYCSTLYSKLSVNNREEAIT 589

Query: 239 YAVRNNIV 246
            A + NIV
Sbjct: 590 RARKENIV 597


>gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703]
          Length = 236

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 19/191 (9%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------------TP 122
           D ++ S++P + V        +    V+        P                       
Sbjct: 43  DMVIISNYPSEWVNTYKKRNYNSIDPVILTAVNKVSPFSWNDNMVRNSRLKLPQLFEHAR 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKS 175
              + N Y  +  D       L L       ++     ++ +L                 
Sbjct: 103 QYDICNGYTFVLHDQNNHMATLSLAADNIENMIHGNQEKLQMLLIATHEKTLSLYRELAE 162

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              H   D   + RE + L W S GKT  EIA+ILGI  +TV  +I +++RK        
Sbjct: 163 SRQHRSNDMLFSERENDILYWASMGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKH 222

Query: 236 AIAYAVRNNIV 246
           AI   +  N++
Sbjct: 223 AIRMGIEMNLI 233


>gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium]
          Length = 238

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 77/230 (33%), Gaps = 16/230 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+A ++     V    +M A    V     L           +   ++S +P        
Sbjct: 9   LMADVLSSTTEVEMAAKMNAAAPQVLCEQALFGIELRQPMLPVIQHITSGYPEQYRHLYN 68

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE---------NITPPAGMDNRYCSLTFDVARIRI 142
                     +        P+F                +   G+ + +     +  ++  
Sbjct: 69  DKGFIYRDPSVVHCQTRTDPIFWNESMYDASSYEIMEESQRFGLGHGFSVPVRESDKVVS 128

Query: 143 GLMLLFP------KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + L         +   I+      +  +    A       +   +   L+ RE+ECL W
Sbjct: 129 MISLARDQPFTKQELEYIVPTA-KVLATVMHVVAQKIIVPSMIESRQPRLSPRELECLRW 187

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GK++  IA IL IS +TV  Y+   +RK    TR  A+A  V   ++
Sbjct: 188 VAQGKSNTVIADILKISDDTVAFYLRGALRKLGVSTRMQAVALCVTFGLI 237


>gi|332204409|gb|EGJ18474.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLDAGAKGYMIKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|239985867|ref|ZP_04706531.1| two component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 221

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 59/223 (26%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D L         +     +    E   G     LVR        +D  +     
Sbjct: 3   RVTLADDQLLVRAGFRALLDAQPDIEVAGEAADGEEAVRLVRELRPDIVLMDIRMPRLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     +    F              + +     +   +   
Sbjct: 63  LAATRRITG------DPELNDVKVVMLTTFELDEYVFEALRNGASGFLVKDTEPEELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +                LT RE E +  +  G ++
Sbjct: 117 VRAVVGGDALLSPGVTRRL----IAEFAARSKEPTAAASLALLTEREREVMALVGIGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 173 EEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|284029985|ref|YP_003379916.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809278|gb|ADB31117.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     + +  L    D +  +                    G     L    
Sbjct: 2   IRVVLVDDQPLIRTGIRALLDAEDDIDVVAEGSN---------------GVEGVDLAVEH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A          L     +    +              
Sbjct: 47  RPDVVLMDVQMPLMDGIEATRRIAG------DARLADVHVVILTNYGLDEYVFNALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   L ++     ++       +    +             G +  LT
Sbjct: 101 SGFLVKDTEPVDLLQALRVVIRGDALLSPTVTRRLI---SEFVARPPDVVSTAGLEL-LT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++D+IA  + +S  T   +++  M K   + R+  +  A ++ +V
Sbjct: 157 PREREVLALVAHGLSNDQIAERMVLSPTTAKTHVSRAMSKLQARDRAQLVVIAYQSGLV 215


>gi|329117459|ref|ZP_08246176.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907864|gb|EGE54778.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 213

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  + E     +         +  +                    G     L 
Sbjct: 1   MDKIRVILVDDHEMVRLGLKSFLNMQKDIEVIGEASN---------------GRQGIDLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +     +           L    +    +      
Sbjct: 46  LELRPDVLVMDLVMPEMGGVEATLDILSKWTE--------AKVLVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K +D +     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIKKVAKGQLAIETE-----------VDKKIKEHDKNPELHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +++
Sbjct: 147 ELTAREFDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLDVDDRTQAVVYAFQHH 206

Query: 245 IV 246
           IV
Sbjct: 207 IV 208


>gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT  V            ++    ++             GA    L R        +D  
Sbjct: 3   IRTLLVDDQALVRGGFRLILESAPSIDVVGEA-----CDGAEAVALARTARPDVVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +  +E             +    F              + +       
Sbjct: 58  MPQLDGIDATARIVAAE--------PATKVIILTTFDLDEYVFAALRAGASGFMLKDVRP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A++   + ++     ++       +       A      +       +LT RE++ L  +
Sbjct: 110 AQLVDAVHVVAGGDALLAPSATRRL---LDRFAGELPGDERPLPDLRDLTERELDVLRLV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G ++ E+A  L +S  TV  +++S++RK   + R  A+  A    +
Sbjct: 167 AQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLAYDVGL 214


>gi|149003489|ref|ZP_01828363.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|169833867|ref|YP_001693899.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|194398711|ref|YP_002037067.1| response regulator [Streptococcus pneumoniae G54]
 gi|225853962|ref|YP_002735474.1| response regulator [Streptococcus pneumoniae JJA]
 gi|237649348|ref|ZP_04523600.1| response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821532|ref|ZP_04597377.1| response regulator [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758425|gb|EDK65424.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|168996369|gb|ACA36981.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|194358378|gb|ACF56826.1| response regulator TCS03 [Streptococcus pneumoniae G54]
 gi|225723015|gb|ACO18868.1| response regulator [Streptococcus pneumoniae JJA]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|75906884|ref|YP_321180.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700609|gb|ABA20285.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 239

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 73/257 (28%), Gaps = 34/257 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I L  + +     +     + + +  +            +  +            
Sbjct: 1   MNKIRIALIEDHDLTRVGIRTALLQKEEIEVVGEAGNATEGLNMLKKV------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L + +                 L   +       +   A
Sbjct: 49  ---QPDIAIIDIGLPDKDGIELTKELKSISNGADLP----TKVLILTLRDNKEAVLAAFA 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC        +   + + +     I       +   A  Q+    +        F
Sbjct: 102 AGADSYCMKDIRFDNLLEAVRVTYNGNAWIDPAIARIVLQQAQQQSPKPVTTITEAKNSF 161

Query: 185 ---------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                           LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K  
Sbjct: 162 INSETEDNLETIDSYTLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLC 221

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 222 ADDRTQAAVRALRSGLV 238


>gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 28/230 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI +  + E     +  + +  + L  +                    G     + +  
Sbjct: 2   INIAIVDDQELMRDGLRRILSTYEELQVVATGKN---------------GFEALEICKQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + V+ +   +         R   +    F      +   A   
Sbjct: 47  QLDVLLLDIRMPEMNGVETVKKLKEEKY--------RVKVVMLTTFEDEEYIVQAMAYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   +  +     ++   ++ E+     Y     K  +      ++ T
Sbjct: 99  SGYLFKDMPYDQLAECVKEVHEGRFMM-PQKVAEVLAKNIYAPEALKKRENP----YDFT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            REV+    + +G T+ +IA  L IS  TV NY+++I  KT T+ R  A 
Sbjct: 154 EREVQIAEMMKDGFTNKQIAKTLYISEGTVKNYVSNIYAKTQTENRVEAA 203


>gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 75/218 (34%), Gaps = 16/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFL------LVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++ ++  V     +  + E  GA              +  +    D I+       +  
Sbjct: 3   RILIVEDQVIVRQGLRMIIEQDGAFSVAGEAENGQEAIEKMESHGADIILMDIQMPVMNG 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A     K +  ++         F+     +       N +   T D  R+   +    
Sbjct: 63  IEATRMIRKRWPAVKIL---ILTTFNDEDYALQTLREGTNGFLLKTSDGPRLLQSIRSCL 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  I           AA        +  H   +  LT RE +    I  GKT+ EIA 
Sbjct: 120 EGGISIHEQV-------AAKVMPKLLDHSCHEEAEVPLTPRERDIARLIGHGKTNKEIAN 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV N++  I++K   + R+    +AV+N+I+
Sbjct: 173 ELYLSVGTVKNHLTQILQKLDLRDRTQLAIFAVKNDIL 210


>gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342]
 gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 204

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 31/232 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + E     VS   +    +  +   +                G     L          
Sbjct: 2   DDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGAELALQLRPDIIL 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D ++      +  R +                 +    F    +           Y   
Sbjct: 47  MDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T   + I   +   +    ++      ++        +  +        + ELT RE E 
Sbjct: 99  TSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELTERESEI 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 LLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 218

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     + +  L      +  +                    G          
Sbjct: 3   IRVLVVDDQSMVRAGLRMLLADEPDIEVVAEAGN---------------GREAVAQAARF 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +              L    F+             
Sbjct: 48  HPDVVLMDIRMPELDGLEATRRILAAG--------DTARVLVLTTFNLDEYVYEALGAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        ++   +  +     ++       +      +    +           LT
Sbjct: 100 SGFVLKDDPPEQLIAAVRTIADGDALLSPTVTRRV----IREFTRLRRQPPPA-AVATLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GRE+E    I++G ++ EI   L IS  TV  ++  + +K   + R+ AI  A +  I
Sbjct: 155 GRELEVFRLITQGLSNAEIGRELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTGI 212


>gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
 gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae
           bacterium Broad-1]
          Length = 231

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 71/242 (29%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + +++  + E   S +  +  R D L  +            + A             
Sbjct: 12  ASPIRVIVVDDQELVRSGLRRILRRRDGLEIVAECGDGSEVVAALEA------------- 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                       +V  D     V  +  +   +               F           
Sbjct: 59  --------NPADVVVMDLRMRQVDGITATGLVRALPEAPPVLV--LTTFDEDELVSGALR 108

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         + + +  +      +       +  LA Y  +          +  
Sbjct: 109 AGAAGFILKDSPAEELVMAVRSVALGDAWLDPAITGRV--LATY-RSAVAPPASRAVEVS 165

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+E L  ++ G T+ EIA  L IS  TV ++I  I  K   + R+ AI +A  + 
Sbjct: 166 ELTDRELEVLRGLASGWTNSEIAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHG 225

Query: 245 IV 246
           IV
Sbjct: 226 IV 227


>gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24]
 gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 223

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 64/222 (28%), Gaps = 8/222 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +  +  M  + E   G     L R        +D  +     
Sbjct: 4   RVLLADDQALLRATFRILIDSSEDMDVVAEAADGRDAVELTRTHRPDIVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L+    L    F T            + +         +  G
Sbjct: 64  LAATAEICA------DPALRGTRVLILTTFETDEHVARALRIGASGFLGKDVTAEELLDG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +        +  ++  V       LT RE E    +++GK+ 
Sbjct: 118 IRTVAAGDALLSAAATRSLITRFLDSPD-PRASPVPPEDLAALTAREREVTALVADGKSD 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++     K   + R+  +A+A R+ +
Sbjct: 177 KEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 218


>gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 204

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 31/232 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + E     VS   +    +  +   +                G     L          
Sbjct: 2   DDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGAELALQLRPDIIL 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D ++      +  R +                 +    F    +           Y   
Sbjct: 47  MDLVMDEMDGVEATRSIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T   + I   +   +    ++      ++        +  +        + ELT RE E 
Sbjct: 99  TSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELTERESEI 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 LLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|322377077|ref|ZP_08051569.1| DNA-binding response regulator VraR [Streptococcus sp. M334]
 gi|321281790|gb|EFX58798.1| DNA-binding response regulator VraR [Streptococcus sp. M334]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +     +           L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEWHE--------AKILIVTSYLDNEKIMPVLNAGARGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVATGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|296503059|ref|YP_003664759.1| two-component protein kinase [Bacillus thuringiensis BMB171]
 gi|296324111|gb|ADH07039.1| two-component protein kinase [Bacillus thuringiensis BMB171]
          Length = 319

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 77/233 (33%), Gaps = 12/233 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQK 73
           +  +      S+   R+  +D        ++ +       + VG +       +L    K
Sbjct: 92  SCVLPKQVQLSNKQIRLCIVDDHSFIRESLHTILSGLEDLQVVGMAEDGEQALELCGRLK 151

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D ++      +L    A     K +  ++         F              + Y   
Sbjct: 152 PDVVLMDLEMPNLDGIHATKMIKKRWPEIRVLILST---FQNTERAKEIIRNGADGYVLK 208

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           + D   +   + L++  G +I  D    +              D     ++ L+ RE+E 
Sbjct: 209 SIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGI---EYGLSKRELEI 265

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A    ++
Sbjct: 266 LELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGLL 318


>gi|297199555|ref|ZP_06916952.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713519|gb|EDY57553.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 11/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   G       R        +D  +     
Sbjct: 4   RVLLADDQTLVRAAFAMLVESARDMEVVAEAGSGREAVGAAREVRPDLVVMDIRMPDLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     L    + T    +       + +       A +   
Sbjct: 64  IEATRLIAA------DEELAGVRVLVLTTYDTDENIVEALRAGASGFLVKDTRPADLLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +     S  V  G    L+ RE E L  ++ G  +
Sbjct: 118 IRTVAAGEALLSPGPTARL----IERFLRSPSVPVAGGGPECLSDREREVLALVARGLNN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  LG+S  T   +++ IM K   + R+  +  A  + 
Sbjct: 174 TEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESG 214


>gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 215

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 30/238 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  + E     V  + +R D L  +                    G     L      
Sbjct: 4   LIIADDHELFLEGVRDILSREDDLDVLALART---------------GQEALELTLQHHP 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      +  R +  S        L     L   +               + 
Sbjct: 49  DVVVMDVTMPKMNGIEASRRIKSS--------LGDVKILALSMHADKRLIAEILKAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTG 188
           Y         +   + ++      +           +    +  K  D     +   L+ 
Sbjct: 101 YALKEGSSEELIRAIHIVSSGETYLSPKIA------SILIKDYLKLLDTAVPSRASLLSD 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  +++G ++ E+A  L IS+NTV+ +   IM K      +  I +A+R  ++
Sbjct: 155 REREVLALLAKGSSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIAELIRFAIREGLI 212


>gi|254391866|ref|ZP_05007060.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294816214|ref|ZP_06774857.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326444547|ref|ZP_08219281.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197705547|gb|EDY51359.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328813|gb|EFG10456.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 244

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 62/228 (27%), Gaps = 12/228 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D L     L   +     +  + E   GA    L +        +D  +   
Sbjct: 19  VIRVLIADDQLLVRRGLVLMLGPEPSVEVVGEAADGAQAVELAQRLRPDVTVMDIRMPVL 78

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +           +     L    F      +         +         + 
Sbjct: 79  DGIAATEQLTRQ--------VPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELV 130

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWIS 198
             L ++     ++    L  +            +             LT RE E    I+
Sbjct: 131 TALHVVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTRPTGVPDGLTPREREVWRLIA 190

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  +  IA  + IS +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 191 AGLDNTGIAAEMFISPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 238


>gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +    +    +  +   +                      L    
Sbjct: 2   IRLLIVDDHKMVREGLKIYLSTEPDIVVVGEAENGEEAAR---------------LTAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D I+      +  +    +        ++       P        +       
Sbjct: 47  KPDVILMDLIMPRVDGIEGTKRCLEAH-----PGVRVIVLTSMP---DDELVVPAIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +            +         E+T
Sbjct: 99  LSYVLKDIAADELAETIRKAVSGQPTLHPVAAQRM-------MQELTAPPKASAGVEEIT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EI   L I   TV  +++ ++ K   + R+    YA++N +V
Sbjct: 152 PRELEVLKLIAQGLSNKEIGERLFIGERTVKTHVSHLLEKLQLQDRTQLAIYALQNKLV 210


>gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 63/241 (26%), Gaps = 23/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       +  L      +  +                    G      V
Sbjct: 1   MEPIRVLIADDHAPFREGLRALLRSEGDIETVGEAAT---------------GREAIARV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S            + L   +F           
Sbjct: 46  ADLQPDVILMDLHMPDGNGIEATHSILASS--------PHISILVLTMFEDDDSVFAALQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       A I   +  +     I        +    A                 
Sbjct: 98  AGARGYLLKGALKAEILRAIRGVSQGEAIFGPTIAKRLMSYFAMLKPSAPLPAPPAQAFP 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++  T+ EI   L +S  TV N++++I  K    TR+ AI  A    
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217

Query: 245 I 245
            
Sbjct: 218 W 218


>gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 254

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 77/244 (31%), Gaps = 26/244 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + Q V + L  ED    + +S    R      +                         LL
Sbjct: 36  KSQPVRVFLVDEDSHIRNVISQELMRDPRTILVGQASS----YREARKSIFAQEFD-VLL 90

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +   L + Q  D +       D V+             +     +           +   
Sbjct: 91  IDLSLSEGQGADLL-------DWVQL-----------RMPGVLSIAISSSEKDDVAMDAF 132

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y             ++ +   G  I      +I  L           +    K+
Sbjct: 133 KKGVLGYLLKNSWFGSYSQAVLEVANGGASISPIVAKKI--LPKIFQTSITEENPLEYKN 190

Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +E LT RE E L  I++GK + EI   L IS  TV+ ++ +I RK   +TR+ A+ YAV 
Sbjct: 191 YEPLTEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRKMQVRTRAQAVRYAVL 250

Query: 243 NNIV 246
             I+
Sbjct: 251 KGII 254


>gi|148983791|ref|ZP_01817110.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923938|gb|EDK75050.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301799497|emb|CBW32043.1| response regulator protein [Streptococcus pneumoniae OXC141]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQHHLV 205


>gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 254

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 67/251 (26%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTVDQQMDCALLLASELGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP------------------ 122
           + P D           +   V         P   +                         
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLH 121

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
            + M                 L  L         +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 234

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 16/227 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK----LDSIVSSDWPFDLVRC 89
           AR++ +D        + A  E     +  +        +        +V SD     V  
Sbjct: 7   ARLLLVDDEPGLREAVQAYLEDSNF-NVDVASNGREGWELLQKNPPDLVISDIMMPQVDG 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                + +     +    +F        + I       + Y S  FD   +   +  L  
Sbjct: 66  YQFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLLV 125

Query: 150 KGRIILR-----------DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +                     ++  + ++                +LT RE   L  ++
Sbjct: 126 RRAAAKESGENTETPDITALANQMARIESFLTGRSAIAQSPSPIKIDLTPREQSVLDLVA 185

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 186 QGLMNKEIARRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 232


>gi|256378541|ref|YP_003102201.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922844|gb|ACU38355.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 226

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     +  + E   GA    L          +D  +     
Sbjct: 4   RVLLADDQALIRAGFRMIVDADPGLEVVAEAADGARAVELACASRVDVVLMDLRMPDVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           L     L    F      IT      + +     D A +   
Sbjct: 64  IEATRRICA------DERLAGVRVLVLTTFDDDENVITALQAGASGFLGKNVDPAELVTA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    +      +   V       +TGRE E +  ++ G ++
Sbjct: 118 IRVVAEGNALLSPKATRGL---VSAFVAQSRPPAVAAPGLDLVTGREREVMVLVAHGMSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           D IA  L +S  TV  ++   M K   + R+  +  A +N +V
Sbjct: 175 DAIARHLFLSPLTVRTHVNRAMAKLGARDRAQLVVIAYQNRLV 217


>gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
          Length = 213

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  + E     +         +  +                    G     L 
Sbjct: 1   MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASN---------------GREGVDLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LALKPDVLVMDLVMPELGGVEATLEVLKKW--------KEAKVLVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D H     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVSKGELAIETE-----------VDKKIKAHDQHPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVGDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 236

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 72/229 (31%), Gaps = 19/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEY---VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           R+  L+     T     +      +G  +          E + + I  +++P +      
Sbjct: 8   RLPKLEGENEITSVFEMVINQTYELGFQYCSFKMSSQVSENQTNPIEFTNYPKEWTTVYN 67

Query: 92  LSEKDKYYNVLQRPTELFCPVFHT--LPENITPPAGMDN------RYCSLTFDVARIRIG 143
            +       V++       PV     L ++      +         +     D       
Sbjct: 68  QARYFDVDPVVKHCKRCVLPVVWEGTLFKDAPSLWSLAQTLNVNVAWTQAVHDFQG-VFS 126

Query: 144 LMLLFPKGRIILRDRL----WEIGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTW 196
           ++ L      +    L      +  L      +               +LT RE E L W
Sbjct: 127 MLTLSRGTDDVSPVELYEKAGHVLWLCHAMHAVVAQKYAGKPSALPPSKLTPRETEILKW 186

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + GKT+ +IA IL +S  TV  +I+S  +K     +  A+  A +  +
Sbjct: 187 SAMGKTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAGL 235


>gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293]
 gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1]
 gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26]
 gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201]
 gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 204

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 31/232 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + E     VS   +    +  +   +                G     L          
Sbjct: 2   DDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQLRPDIIL 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D ++      +  R +                 +    F    +           Y   
Sbjct: 47  MDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T   + I   +   +    ++      ++        +  +        + ELT RE E 
Sbjct: 99  TSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-ELTERESEI 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 LLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|163859318|ref|YP_001633616.1| nitrate/nitrite response regulator protein [Bordetella petrii DSM
           12804]
 gi|163263046|emb|CAP45349.1| nitrate/nitrite response regulator protein [Bordetella petrii]
          Length = 220

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 72/239 (30%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S V  L  R      +      V    R                   
Sbjct: 3   IRILLIDDHSLFRSGVRLLLQRQPDFEVVAEAADGVEGIKRAKEF--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           + R   +   V     E         
Sbjct: 48  QPDVILLDLNMPGLSGLETLQLLVQD--------VPRSAVVILTVSEETDELSQALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +        +I  +   ++      QA+       +  +   LT
Sbjct: 100 RGYLVKNIDAEALTAAIRRAATGEPVIADNMTAKLVDRFREQASQGAGNAANAER-TRLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  ++ G ++  IA  L I+ +TV  ++ +I++K    +R     YAV N +V
Sbjct: 159 TREREIVQCLAHGASNKVIARQLDIAESTVKIHVQNILKKLNLTSRVQVAVYAVENGLV 217


>gi|297563175|ref|YP_003682149.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847623|gb|ADH69643.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 225

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 9/227 (3%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS 79
           + V  L    D       L   +S    +  + E   GA+   LV         LD  + 
Sbjct: 7   AGVLRLVLADDEAMMRAGLRAILSAAPGIEVVGEAGDGAAAVALVAEHRPDIALLDVQMP 66

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                     ++                +    F          +G  + +   + D  +
Sbjct: 67  GTDGLTATEVISREH--------PGTAVVILTTFSEDAYIARALSGGASGFVLKSGDPRQ 118

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  GL  +   G  +  +    +                   +   LT RE   L  + +
Sbjct: 119 LVEGLRAVAEGGAYLSPEVARRVIDELDASGGRLSRASAARERVGRLTERERGVLALVGQ 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++DEIA  L I+  TV  ++ SI+ +   + R  A   A    +V
Sbjct: 179 GCSNDEIARRLAIAPGTVKVHVGSILTRLDVRNRVQAAVVAYEAGLV 225


>gi|322386960|ref|ZP_08060584.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321269242|gb|EFX52178.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L         +  +TE   G                +D ++     
Sbjct: 2   RILLVDDHQMVRLGLKSFFELQDDIEEVTEATNGREGVEKALESRPDVILMDIVMPEMSG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +                 L    +    +           Y   T     I   
Sbjct: 62  IDATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGARGYMLKTSSADEILHA 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I  +   ++     +                +LT RE + L  +++G  +
Sbjct: 114 VRKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYEN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 163 QRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 254

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 67/251 (26%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTVDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP------------------ 122
           + P D           +   V         P   +                         
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLH 121

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
            + M                 L  L         +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAQAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|311899330|dbj|BAJ31738.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 223

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L R        +D  +     
Sbjct: 4   RVLLADDQALLRGTFRLLIDSAPDLEVVGEAGTGREAVALARSLRADLVLMDIRMPD--- 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +A +        L     L    F              + +     D A +   
Sbjct: 61  ---LDGLAATALITADEDLAGVKVLILTTFENDEYVAEALRAGASGFLGKGIDPAELLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L+     ++         L+  + A           +   LT RE + +  ++ G ++
Sbjct: 118 VRLVAAGDALLSPAATK--ALIGRFLAQPDPVRRAALPRLDVLTAREQQVVALVAAGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           D+IA  L ++  T   ++   M K   + R+  +  A    +V
Sbjct: 176 DDIAERLFVTPLTAKTHVNRAMTKLGARDRAQLVVIAYETGLV 218


>gi|298244698|ref|ZP_06968504.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552179|gb|EFH86044.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 17/224 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + +   GA   LLV   +     +D ++     
Sbjct: 6   RVLIVDDHAIVRHGLRTLLETEADFEVVGDVASGAEALLLVDNTVPDVILMDLVMPGLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 +    +H               Y      ++ +   
Sbjct: 66  VETTRLLKQRSPCSQ--------IIVLTSYHEDEHIFPTIRAGALSYLLKEAALSELTEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKT 202
           +        ++           AA      +  +    K +  L+ RE E L WI++G +
Sbjct: 118 IRKAARGEVVLHPHV-------AARVLQELRGTNKDASKLYATLSEREREVLNWIAQGLS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L IS  TV +++ +I+ K     R+ A  Y  R  +V
Sbjct: 171 NGQIAARLVISERTVKSHVNNILGKLQVSDRTQAAIYVWREGMV 214


>gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A ++     ++            GA               +D  
Sbjct: 5   IRVLVVDDQDLFRGGFAMILNAQPDITVVGEA-----ADGAEAVRAAAALAPDVVLMDIR 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +         +  S              L   ++              + +       
Sbjct: 60  MPTLDGVGATAAICQSC---------AAKVLVLTMYDVDDYVYAALRAGASGFLLKDVRR 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L+     ++       +    A       +      +  ELT RE E L  +
Sbjct: 111 DELVRAVRLVAAGESLLAPSVTRRLI---ADVVGRGAARPALARRLDELTERESETLRLL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ EIA  L +S +TV ++++S++ K   + R+ A+ +A  + ++
Sbjct: 168 GRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESGLI 216


>gi|293364822|ref|ZP_06611539.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703071|ref|ZP_07640018.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316272|gb|EFE56708.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623464|gb|EFO02454.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   GA    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGAQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   L
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 62/223 (27%), Gaps = 24/223 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++       + E   G     L R        +D  +     
Sbjct: 11  RILVVDDHHIVRQGLVALLNTLPGFEVIAEAGDGVEAIALHREHQPDITIMDLRLPRMNG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +                 +    F    +           Y     D   +   
Sbjct: 71  VEAITRIREES--------PGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTAA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I       +                      ELT RE++ L  I +G+++
Sbjct: 123 IRSVHAGKSRIPTVVAERLA---------------ERMSGSELTARELDVLRLIVQGRSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  +I +++ K     R+ A   A++  +V
Sbjct: 168 REIAADLHISEATVKTHINNLLSKLGVSDRTQAATTALQRGLV 210


>gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627]
 gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627]
          Length = 228

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 66/228 (28%), Gaps = 13/228 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L R   ++        +      +    + L         +      +++P   VR   
Sbjct: 1   MLLRFQRMEVAEEVYHEIEHQAHQLEYDFYSLCVRHPVPFTRPKVAFYTNYPEAWVRYYQ 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIG 143
                     L         +                    G+            R    
Sbjct: 61  EKNFLAIDPALNPENFRQGHLLWNDDLYREAQPLWEAARAHGLRRGVTHYFMLPNRALGF 120

Query: 144 LMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWIS 198
           L        +  +   +   ++ LL           +       +   + RE E L W +
Sbjct: 121 LSFSRSSTREIPVPGDELQLKMQLLVRESLMALMRLNDEMVMTPEMHFSKREKEILKWTA 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EGKTS EIA+IL IS NTVN +  ++ +K     ++    YA    ++
Sbjct: 181 EGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 228


>gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 242

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 75/237 (31%), Gaps = 25/237 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + ++ L      +A +   D                G     L    
Sbjct: 27  IRVIVADDQEIVRTGLTILLDAQPDIAVVGVADD---------------GNKAVELALAL 71

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +  R +A         V +    +    F      ++      
Sbjct: 72  RPDVCLFDIRMPGIDGIEATRRLAG------PTVDRPLAVVVITTFDHDDYVVSALKAGA 125

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +        +I       +  L+++ A+  +      G+   LT
Sbjct: 126 RGFLLKDAGPELLAQAIRAAASGDALIAPRVTARL--LSSFVASRPQLPRAQPGEA--LT 181

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E L  ++ G+T+ EIA  L IS +TV  ++AS+M K   + R     +A    
Sbjct: 182 AREEEVLLIVARGRTNAEIADELHISLSTVKAHVASLMTKLGARNRVEIAIWAYETG 238


>gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 72/236 (30%), Gaps = 28/236 (11%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +     +  + L   +D +  +      +     ++ L                 
Sbjct: 1   MLIADDQAMVRAGFAALLGAADDITVLGDAADGLIAVDEVHRL---------------KP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +           +  S              L    F       +      + 
Sbjct: 46  DVVLMDVRMPRRDGLWAAEQIISSGSS--------TKVLMLTTFDIDDYVYSALRIGASG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +         +   + ++     ++       +      +     +          LT R
Sbjct: 98  FLLKDAPADELVRAVRVVAAGDALLAPSVTKRLIEQVTSRTTRKATAAAES-----LTPR 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  +++GK++ EIA  L +S  TV  ++++++ K   + R+ A+ +A  N +
Sbjct: 153 ELEVLLTVADGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208


>gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
 gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall
           stress [Carnobacterium sp. 17-4]
          Length = 210

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +               VG          
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQSDIEVIGEAENGK------------VGFEK---AMEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +      K +   +         F    +         
Sbjct: 47  RPDVILMDLVMDIMDGIESTKAI-----MKEWPEAKIVIVTS---FIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    I+  +   ++            +         +LT
Sbjct: 99  SSYILKTSTASTIANAIRSTYKGETILEPEVTGKM--------MERLTKKHVHQLHEDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++G ++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++++
Sbjct: 151 NREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHHLI 209


>gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 254

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 12/229 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D       +   +S    +  + E       L          + +++V       
Sbjct: 9   LLIVDDHPLFRQGVRAALSICRDIVVVGEASSGEDALEWMNAAPPNLEPNAVVVDLNLPG 68

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +       +    Y  +         V+ +  +         + Y S       +   L 
Sbjct: 69  MNGLELTRQLRLNYPGVGIV---VLSVYESDEQAFNALRAGASAYRSKDVHPDELADVLR 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGREVECLTWI 197
            +     +I    L +   +A    + F++                  L+ RE+E L  I
Sbjct: 126 RVARGEYVINDVVLDD-PKVAGRVLSQFRNLPQDVTSLQEMEFPLFTPLSDREIEVLERI 184

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L IS  TV N+I+SI+RK +   R+ A+ YA+R   +
Sbjct: 185 AAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQAVLYALRRGWI 233


>gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 236

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 15/227 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +  ++     +  + E   G     L    +     +D  +      
Sbjct: 9   VLVIDDHPLFRQGIRWSLESAPDIEVVGEAENGQEAIKLTERLMPDIVLVDINLPGLNGL 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +   E         R   +   V+    +           + S       +   +
Sbjct: 69  EVARVIKRRE--------PRTGIIVLSVYEDDDQLFQAIKVGAAAFTSKDISPDELVQMI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWISE 199
             +     +I    L     +AA   + F+       +D       LT RE+E L  I+ 
Sbjct: 121 REVARGRYLINDAVLAR-PNVAARVLHQFRELAATEEEDSASLFAPLTSREIEILDCIAR 179

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L IS  TV N+I SI+ K     R+ A+  A++   +
Sbjct: 180 GLSNKEIANELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKGWI 226


>gi|271965986|ref|YP_003340182.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509161|gb|ACZ87439.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 223

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 28/242 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +S L      +  +   +                GA    L    
Sbjct: 2   IRVMLADDQALLRVSLSALLNTEPGMRVVGAAEN---------------GAEAIDLAADL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +           ++         F              
Sbjct: 47  RPDVVLMDVRMPGTNGIDATRKITE------DPSIRVV---ILTSFDLDEYVFAGLRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY----QANMFKSYDVHWGKD 183
           + +         +   + ++     ++       +           A+            
Sbjct: 98  SGFLLKDSPPEDLLTAIRVVAAGEALLTPAATRRLIERFTATPPSPADRLPESTPSRKIL 157

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ++ G ++ EIA  L ++ +T+  ++ +++ KT  + R+  + +A  +
Sbjct: 158 ATLTDRERDVLARVARGMSNAEIAADLVLATSTIKTHLTNLLAKTEARDRAQLVIFAYES 217

Query: 244 NI 245
            +
Sbjct: 218 GL 219


>gi|307325986|ref|ZP_07605185.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888478|gb|EFN19465.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 230

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 62/227 (27%), Gaps = 11/227 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             V  +    D +         ++    +  + E   G     LVR        +D  + 
Sbjct: 8   DAVIRVALADDQILVRAGFRALLAAQPDIEVVGEAADGEQALALVREQHPDVVLMDIRMP 67

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                   R +           L     +    F              + +     +   
Sbjct: 68  VLDGLAATRRITG------DPALGEVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEE 121

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +     ++       +      +               ELT RE E +  +  
Sbjct: 122 LLRAVRAVVGGDALLSPGVTRRL----IAEFAARSREPAPAAALAELTEREREVMALVGM 177

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 178 GLSNQEIARRLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGLV 224


>gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 237

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 12/233 (5%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQK 73
            +  +   V       D           ++    +  + E   GA   L           
Sbjct: 4   AEPAKEPRVIRTLVADDQAVVRTGFVNLLNTQEDIEVVAEAEDGAQAVLSAGETRPDLAL 63

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      +  R +  +              L    F          A     +   
Sbjct: 64  LDIRMPHKNGIEAAREILAASGG-------ATKILMLTTFGLDEYVYDALAAGAGGFLLK 116

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   + ++     ++  +    +  +A +         V    D  LT RE E 
Sbjct: 117 DATFPELLHAVRVVAGGNALLSPEITKRL--IAEFVHARGSRLPVPAAGD--LTARETEV 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LT I+ G ++ EIA  L I+ +TV  +I  +  K   + R+ A+  A    +V
Sbjct: 173 LTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 225


>gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 214

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 36/241 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVR 65
           ++N++L  + E                   + L   ++    +  + E   G     L  
Sbjct: 4   KINVILVDDHEMVR----------------LGLKSFLNLQGDVEVVGEAGNGREGVDLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++      +L    A  E  K +   +         +    +       
Sbjct: 48  ELRPDVVVMDLVMP-----ELDGVQATLELLKEWPEAKIL---VLTSYLDNEKIYPVIEA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T   A I   +  ++     I  +             N  K +D H     +
Sbjct: 100 GAKGYMLKTSSAAEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDD 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++
Sbjct: 149 LTARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|83646727|ref|YP_435162.1| transcriptional regulator NarL [Hahella chejuensis KCTC 2396]
 gi|83634770|gb|ABC30737.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 212

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 30/234 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  I++  +       +  L    + L  +           +   L             
Sbjct: 3   EKATIMMVDDHPLFRKGIRQLIELEEELDIVAEAKNGEEGLSKAKEL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D +R +  +  D           +   V     + +     
Sbjct: 50  --EPDLILLDLNMQGMDGLDTLRAIRAAGVD--------SRIIMLTVSDNEADVVNCFRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   I   +  +      I       +        +  +           
Sbjct: 100 GADGYLLKDMEPEDILEKIKQVTLGKMAISERLTEILA-------SALRKPVEAADPSAS 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E LT I++G ++  IA  L IS  TV  ++  I++K   ++R  A  +
Sbjct: 153 LTSREYEILTRIAQGHSNKVIARDLNISDGTVKVHVKHILKKMGMRSRVEAAVW 206


>gi|239987130|ref|ZP_04707794.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 242

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 14/237 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            RE   R                ++  +  +             GA    L R       
Sbjct: 12  AREAPIRVLLADDQALLRSAFRVLVDSEPDMEVVGEA-----ADGAQAVELARATGADVV 66

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +         R ++          L     +    F      +       + +  
Sbjct: 67  LMDIRMPGTDGLAATRMISA------DPELAAVRVVMLTTFEVDEYVVQSLRAGASGFLG 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDFELTGR 189
              +   +   + +      ++       +      Q    +          +   LTGR
Sbjct: 121 KGAEPDELLNAIRIAAAGEALLSPAATKGLIATFLAQGGSSQEGPDSAEYAERLAALTGR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G  +D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 181 EREVLVQVAGGHPNDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 237


>gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +V+  + +     +S L      +  +       +    +               
Sbjct: 1   MNPIRLVVADDQKLIRMALSTLAAGEPDIELVAEAADGKAALTAIR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +++R +           ++    +    F           
Sbjct: 47  -DHSPDVLLLDIRMPIMGGLEVLRHIETDP----DATVR---VIMMTTFDIDQYVFESLE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + +   D   I   + ++     ++       +  +  +                
Sbjct: 99  HGAAGFLTKDTDPEFILHAVRVVAAGESLLSPGVTRRV--IDRFTRGRHARTGEPHPGLD 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE E L W++ G ++DEIA  L +S  TV  ++   M K   + R+  +  A R+
Sbjct: 157 SLTARETEILGWVATGLSNDEIAERLVVSPATVRTHVGRAMMKLRARDRAQLVVIAYRS 215


>gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 68/229 (29%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     LA ++     +             GA               +D  
Sbjct: 2   IRVLLVDDQPMVRAGLALVLRSQPDIRVVGE-----RGDGADVVRAAAGCSPDLVCMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +  S                   F                +   +   
Sbjct: 57  MPGVDGVEATRRLRASGGPPVC---------VLTTFDDHDVLWAAVDAGAAGFELKSATP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  I    L    +LA+Y                ELTGRE++ L  +
Sbjct: 108 ENLIEAVRTVAGGGTWIDGTMLG--PVLASY---RRFGRPAPANAPGELTGRELDVLRLM 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L ++  TV  ++ +I  K   + R+ AI +A  + IV
Sbjct: 163 ARGASNREIAGRLCLAETTVKTHVGAIFGKLGARDRAAAIVFAYDSGIV 211


>gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
 gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150]
          Length = 214

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   ++    +  + E   G     L          +D ++      
Sbjct: 7   VILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMP----- 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L    A  E  K +   +         +    +           Y   T   A I   +
Sbjct: 62  ELDGVQATLELLKEWPEAKIL---VLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++     I  +             N  K +D H     +LT RE + L  +++G  + 
Sbjct: 119 RKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDLTARERDILALLAKGYDNQ 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 168 TIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|322387271|ref|ZP_08060881.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141800|gb|EFX37295.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 210

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D     + L         +  + E   GA    +          +D ++      
Sbjct: 3   LLLVDDHQMVRLGLKSYFELQDDVEVVGEATNGAEGISMALELRPDVIVMDIVMPEVNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGARGYMLKTSSADELFHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 QKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|319442855|ref|ZP_07992011.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 251

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 25/242 (10%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D           +     +  + + V G     L          +D  + +      
Sbjct: 3   LADDQQLVRAGFAMVLDSQDDIEVVWQAVDGVEAVRLAEQAPVDIVLMDVQMPNLDGISA 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +  +         +    +    F      ++      + +     D   +   +  
Sbjct: 63  TRQIVDTGVRG--PGGEPTRVVVLTTFDNDEYVMSSITAGASGFLLKDADPEDLNDAVRT 120

Query: 147 LFPKGRIILRDRLWEI----------------------GLLAAYQANMFKSYDVHWGKDF 184
           +     +I       +                        +A          D   G   
Sbjct: 121 VGEASAVISPKATARLLRQVRAGGTDVGAGGLGGADAGRGIATSSDVPAPGPDDDLGLVD 180

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G ++ EIA  L +S  TV  ++  ++ KT ++ R  A+ +A R+ 
Sbjct: 181 PLTPREREILVLMATGASNQEIAARLFVSLPTVKTHVGRVLAKTGSRDRVHAVLFAFRHG 240

Query: 245 IV 246
           +V
Sbjct: 241 LV 242


>gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 252

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 60/233 (25%), Gaps = 18/233 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R            P     +  ++           +       G                
Sbjct: 30  RTGPVTVLIADDQPLVRQGIGLIVRAAPEFRVVGEV-----DDGEQAVAAAHRLRPDVVL 84

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +           +           L     L    F      +       + +   
Sbjct: 85  MDIRMPVLDGVAATERLTAE--------LPGCRVLALSTFDMDEHVVRALRAGASGFLPK 136

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   L  +     ++    L  +  +  + A           +   LT RE E 
Sbjct: 137 DVSPEELTAALRTVSAGDAVVAPRLLTRL--IGTFVA---PQRTTEEVRLDGLTPRETEV 191

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+ G  +  IA  LGI   TV N+I S+  K   + R+ A+  A  + +V
Sbjct: 192 LRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLV 244


>gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 225

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +          E   G                +D  +     
Sbjct: 4   RVVLADDQALVRAGFRLLLDTEDGFEVAGEASDGEQAVAQAVEHRPDIVVMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           L     L    F              + +     +   +   
Sbjct: 64  LEATRRITSH------PALGGVKVLVLTTFDVDEYVYEALRAGASGFLLKDTEPVELLHA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L ++     ++       +    A      +   +      E+T RE E L  ++ G ++
Sbjct: 118 LRVVAAGEALLAPTVTRRLI---AEIVGRPEHRRIDTSAVREVTEREREVLALVAGGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L IS  T   +++ IM K   + R+  +  A  + +V
Sbjct: 175 DEIAAHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESGLV 217


>gi|218671090|ref|ZP_03520761.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 202

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 2/173 (1%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++    L  R +L+ R+  +  T      + ALTEYVGASH+LL R DL QE  LD +V+
Sbjct: 20  SAVAPALLPRDELIQRLHSVASTGRLQSGLRALTEYVGASHYLLARCDLIQESGLDFVVA 79

Query: 80  SDWPFDLVRCMALSEK--DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLV+ +A +          L++  ++F P F  LPE+   P G   +YCSLTF+V
Sbjct: 80  SDWPFDLVKDIANNLVSGYARSTELEKCMQVFQPNFALLPESADVPEGASRQYCSLTFNV 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            R R+ LM LF +G I+  +RL ++GLLA Y A+  +       +DFELT RE
Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGARVDRDFELTDRE 192


>gi|124009769|ref|ZP_01694439.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
 gi|123984274|gb|EAY24623.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
          Length = 218

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 70/240 (29%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + +  +       +  +    D +  +   D       ++ A               
Sbjct: 2   PVKVAIADDHVLFRKGLVTILELDDNIEVVYGADNGKELIDKVDAQ-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  + +        Y  ++         +      I      
Sbjct: 48  -PPDVILMDLKMPVMDGMEATKIIKAK-----YPEVKVLVLSM---YDEEKFIIHCLELG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N Y     D   +   +  +  K             +L              +    EL
Sbjct: 99  ANGYLLKNTDPDELVHAIGTVMAKDFYFNNHIST--VMLKGLNQKKRAKGKPQFENSIEL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I +  T+ E+A  L IS  TV  +  +++ KT  K  +G + +A++N +V
Sbjct: 157 TKREQEVLELICKELTTPEMAEKLFISNRTVEGHRKNLLEKTGAKNTAGLVVFALKNELV 216


>gi|21224169|ref|NP_629948.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|3036890|emb|CAA18523.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 229

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 65/232 (28%), Gaps = 14/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R   V       + +  ++ L   V             G     +V         +
Sbjct: 7   RRPARVVVVDDQTVVREGIVMLLGLLPGVDVVGAAGD-----GEEAVRVVAELAPDVVLM 61

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +                 +    +                Y +  
Sbjct: 62  DLRMPRCDGVEATRRIRSEHPGTQ--------VVVLTTYADDESLFPALHAGARGYLTKD 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I   +  +      +       +    +   +  +        D  LT RE E L
Sbjct: 114 AGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESESEPRPTGPPEPPD-GLTTRETEVL 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+EG T+ +IA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 173 VLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 224


>gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + I+L  +       +  L  R D +  +                    G     + 
Sbjct: 1   MKPIRILLADDHTVVRDGLRALLEREDDMTVVGEAAD---------------GRESIRMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  + +    +  R +  S              +   +       +    
Sbjct: 46  ETESPDVVVMDLAMPNMNGMEATRRILASTSC--------AGVVILSMHSDESYVLGALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      +      +I  +                +  
Sbjct: 98  AGAKGYLLKDSMRGEVIQAIRAVSEGRSFL----TKKIARIMQEDYVSRLQQRGLEDRYD 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I+EG+++ E+A +L IS  TV  + A I++K    +    I YAVR  
Sbjct: 154 LLSDREREVLQMIAEGRSNKEVANLLNISPTTVETHRAHILQKLDIHSVPELILYAVRKG 213

Query: 245 IV 246
           I+
Sbjct: 214 II 215


>gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 211

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 59/216 (27%), Gaps = 15/216 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L++        +D  +     
Sbjct: 3   RILLVDDQSLIRKGLKALLKLEPNLQIVGEAENGQQALELIQLHNPDVVLMDVRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 L    F                Y         +   
Sbjct: 63  VAATRLICQQ--------FPAVKVLMLTTFDDHEYVNQAMRAGAVGYLLKDTPPEELVQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +    L ++ L                    ELT RE+E L  I+ G ++
Sbjct: 115 IQSVQRGYTQLGPGLLQKLQL------ETPAPTITPPPGWAELTERELEILDLIATGASN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EIA  L IS  TV N++ +I+ +   + R+ A   
Sbjct: 169 REIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAIL 204


>gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM
           2380]
          Length = 214

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 70/243 (28%), Gaps = 31/243 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q + + +  +       +S        +  +   D                G      
Sbjct: 3   EAQSITVFIADDHPILRIGLSMYLESKQNIKIIGEADN---------------GFDAVNA 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +  +      +D  +      + +R +  +        L     +    +          
Sbjct: 48  INQNPPDVVLMDVDMPGLSGIEAIRVLRKT--------LPDMRIIVLSTYTKKEYIQEAM 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               N Y +    +  +   +              L     LA                 
Sbjct: 100 MEGANGYVAKNTKIDELIKIIEDFAAGRESHSPYLLN----LAVKWRQRQDDGGAEHN-- 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT  E++ L  I+EGKT++EIA I  +S  T+  ++  I +K     R  A+A A + 
Sbjct: 154 --LTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLEVGNRMEAVAVARKK 211

Query: 244 NIV 246
           NI+
Sbjct: 212 NII 214


>gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 209

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E     V+   +    +  +           ++ AL               
Sbjct: 2   IKVVIVDDHEMVRIGVAAYLSAQPDIEVIGEATNGEEAIDKVLAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D+++      +    +             +   +    F    +         
Sbjct: 47  KPDIVLMDNVMPIKTGAEATAEILAQW--------PQAKVMIVTSFIDDDKLYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T +  +I   +        ++  +    +         M +           LT
Sbjct: 99  VSYILKTSNAKQIADAIRKTMDGETVLEPEATTRV---------MARMRGTAPALHNHLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G  + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +V
Sbjct: 150 DREMEVLLCMARGLANQEIAEELFIALKTVKTHVSNILSKLEVQDRTQAVVYAFQNGLV 208


>gi|269795278|ref|YP_003314733.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097463|gb|ACZ21899.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 216

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 21/237 (8%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+  +     + V  +   +  L+ +                    G +   +      
Sbjct: 1   MVVVDDQAMIRAGVRGILQGAPDLSVVGEAAD---------------GDTGVRMCASLRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      + +R +           L+    L    F   P+ +       + 
Sbjct: 46  DVVLMDLRMPVLDGIEAIRRLRSM------PDLESLRILVLTTFDDDPDVLAALQAGADG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S   + A +   +  +     ++ +     +    A      +   V   +   LT R
Sbjct: 100 FLSKVAEPAELVDAVRGVAAGDVMLSQTATRAVVQHVARAPRPAEPDPVLAQQVASLTPR 159

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E   +   ++G  + +I+  L IS +TV  ++   M K   + R+  +  A R  +V
Sbjct: 160 ERTIVKQAAQGLDNLQISRQLHISPHTVKTHLGHAMAKLDVRDRTQMVVVAFRAGLV 216


>gi|300782878|ref|YP_003763169.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792392|gb|ADJ42767.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 69/225 (30%), Gaps = 16/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D           V     +  + E   GA    L R +      +D  +   
Sbjct: 1   MTRVLIADDQALLRGSFRVLVDSAPGLEVVGEASDGAEAVALTRLERPDVVLMDVRMPEM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +                 L    F       +      + +       A + 
Sbjct: 61  DGIEATRRICAET---------DVRVLMLTTFDLDEYVYSALRAGASGFLLKDTRPADLL 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + ++     ++       +       A   +       +   +T RE E LT I+ G 
Sbjct: 112 AAIEVVASGDALLAPSVTRRL------VAEFARLPSGPVTRLDGVTAREQEVLTLIARGL 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++DEIA  L +   TV  +I  ++ K A + R+  +  A  + +V
Sbjct: 166 SNDEIAARLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV 210


>gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 222

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA+    +         +D  +     
Sbjct: 3   RVALVDDQQLVRAGFRMVIDSQPDLTVVLEASDGAAGVAELSRTPVDVVLMDVQMPHLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   E             +    F      ++  +   + +         +   
Sbjct: 63  IEATRRLTAREDSP--------KVVVLTTFENDEYVMSAISAGASGFLLKDVPPEELLDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I      ++     +   M          + ++T RE+E L  ++ G ++
Sbjct: 115 IRTVHRGDAVIEARSTRKL---LQHVGPMLSDSAAPSLPE-DMTPREIEVLEAMAHGLSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S  TV  ++  ++ KT ++ R  A+ YA +  +V
Sbjct: 171 SEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213


>gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 247

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 14/224 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVRCMALSEK 95
             +         M  L    G +HF++ R  +  EQ+  + ++ S+WP +LV+    SE 
Sbjct: 24  ASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLMLSNWPAELVQQYDASET 83

Query: 96  DKYYNVLQRPTELFCPVFHT-LPENITPPAGMDNRYCSLTFDVARIRIGLML-------- 146
            +   +++R  +   P+                     L          ++L        
Sbjct: 84  FQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAILLPPHADMAHFAVLLHTTYGEPF 143

Query: 147 ---LFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKT 202
              L  K           + L          +++D   G   +L+ RE+ECL W + GK+
Sbjct: 144 VVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAGSGAREKLSSREIECLRWAAAGKS 203

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SDEIA+ILGIS  TV++Y  S  RK     R  AIA A+R  ++
Sbjct: 204 SDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247


>gi|320106073|ref|YP_004181663.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924594|gb|ADV81669.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 239

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       V ++         +   +                G      V   
Sbjct: 23  IRLVVADDHPVVRFGVKNMLMADPGFEVVAEAED---------------GDVAITQVLEH 67

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +R +           ++    +      +  + I       
Sbjct: 68  EPDILLLDVQMPRLPGLEAMRAI-----MSRSPRVKI---ILLTSTISTQQIIEALQIGA 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                       +   +  +      I  +R+  + +          +      K F LT
Sbjct: 120 RGIVLKDSVAGDLGESIRAVASGDYWIGGERVVNLVMALHGLMQKAAAQPER--KTFGLT 177

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I EG ++ ++A    IS  TV  ++++I  KT   TR     +A+ + +V
Sbjct: 178 PRELEVVGCIVEGCSNKDVARQFNISEETVKRHLSNIFDKTGVSTRLELALFAISHKLV 236


>gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 63/222 (28%), Gaps = 16/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +  T  M    E   G +              +D  +     
Sbjct: 6   RVLVVDDHPVFRAALCAMLDATDGMEVAGEAADGLTAVTDAGRLEPDVVLMDLNLPDLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  +              L   +F                Y        +I   
Sbjct: 66  IEATRRIVSAS--------PHTGVLMLTMFENEAAVFAAMRAGARGYLLKGARNEQIIRA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     I           +A    ++  +          LT RE E L  ++ G  +
Sbjct: 118 VRVIGDGEAIFSPA-------IATRVLSLLGTATPRDESFPRLTLREQEILRLVARGMGN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L +S+ TV N+++ I RK     RS AIA A    I
Sbjct: 171 ASIAEELVLSQKTVRNHVSHIFRKLRVTDRSQAIAKAKEAGI 212


>gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 212

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 69/223 (30%), Gaps = 21/223 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +   P     ++++I  D                G     L          LD  
Sbjct: 5   IRVMIIDDHPLFRKGVSQIISDDPNFEVVGEA-----ASGQEGLELAEQTQPDLVLLDLN 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R    ++    Y +L         V  +  + +       + Y     + 
Sbjct: 60  MRGMDGLETLRRFKQTDLLTRYVIL--------TVSDSEDDLMEALKIGADGYLLKDMEP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTW 196
             +R  LM       ++       +              D    + D  LT RE E L  
Sbjct: 112 EDLRANLMKASVGVTVLQDSLTQVLK-------KALSEPDTKVNQADAGLTDRENEILDC 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++EG  +  IA  LGIS  TV  +I +I+RK    +R  A  +
Sbjct: 165 LAEGMNNKNIARKLGISDTTVKVHIKNILRKLNLTSRLEAAVW 207


>gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 228

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 28/245 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + Q V + L  ED    + ++    R      +            +++            
Sbjct: 10  QSQPVRVFLVDEDRHIRNVIAQELMRDPRTLLVGQASSYKEARKNVFSQ----------- 58

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                F    +D  +      +L+  + L   D           +           +   
Sbjct: 59  ----EFDVLLIDLSIGEGQGAELLESIQLKRPDVLC--------IAISASENDDAAMDAL 106

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WG 181
                 Y             ++ +   G  I      +   +     N     +      
Sbjct: 107 KRGAVGYLVKNSWFGSYLQAVLEVANGGAAISPRVAKK---IIPKIFNAAMQGEKIFTHK 163

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE++ L  I++GKT+ EI+  L IS  TV  ++ +I  K   +TR+ A+ YA+
Sbjct: 164 KFESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYAM 223

Query: 242 RNNIV 246
              I+
Sbjct: 224 LTGII 228


>gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905]
          Length = 210

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     VS   +    +  +   +       R  AL               
Sbjct: 2   IQVLIVDDHEMVRIGVSAYLSAQPDITVVGEAENGQEAVERALAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D+++      +    +  +     +   +         F    +         
Sbjct: 47  KPDIILMDNVMPIMTGAEATAEILAA-----WPEAKIMMVTS---FLDDDKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T +  +I   +        ++  +         +   +  +  +     D  LT
Sbjct: 99  VSYILKTSNAKQIAEAIRKTMGGETVLEPEVT-------SKMMHRMRHGNNTPLYD-HLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +++GK + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +
Sbjct: 151 DREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208


>gi|291298154|ref|YP_003509432.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567374|gb|ADD40339.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D    + +  L +    +  +            +  L               
Sbjct: 3   ITVLLADDDPLARTGLRTLVSAQPDIDVIAEAADGTQVLPLVRRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     +    V+          F              
Sbjct: 48  RPDVVLMDVRMPDMDGIEATRRLRRDLTEPPKVVV-------ITTFENDEYVFDALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N +         I   +  +     ++  + +  +            +   +      LT
Sbjct: 101 NGFVLKRAPATEIAHAIRTVASGDALLFPEAIRALAA-------ARPAPPGNPHGPIALT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ +IA  L +S  T+  ++ S++ K     R+ A+  A  +  V
Sbjct: 154 AREAEVLRLMATGLSNQDIATHLTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESGFV 212


>gi|224369516|ref|YP_002603680.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding
           protein [Desulfobacterium autotrophicum HRM2]
 gi|223692233|gb|ACN15516.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding
           protein [Desulfobacterium autotrophicum HRM2]
          Length = 219

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 64/242 (26%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       +  L      +  +   +        +  L            
Sbjct: 1   MNKIKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D ++      +L    A  +  K Y  ++           T         
Sbjct: 50  ---------PDVVLMDISMPELNGMDATRQLKKKYPDVKILILSM---HSTEEYIFETLR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +         +      ++      Q               
Sbjct: 98  AGASGYLIKRSAPTDLIKAIHAAHAGDCFLSPSISKKVIKNYVQQKQGLSLEPRGLD--- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I+EG  + EIA  L IS  TV  +   I +K      +    YA+R  
Sbjct: 155 LLSAREREVLQLIAEGHANREIAGHLYISPKTVEAHRNHIQKKLGLNGTAELTKYAIRKG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 213

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E     +         +  +                    G     L 
Sbjct: 1   MNNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASN---------------GREGVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LALKPDVLVMDLVMPELGGVEATLKILDKW--------KDAKILVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D H     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVSKGELAIETE-----------VDKKIKAHDQHPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|289168573|ref|YP_003446842.1| response regulator [Streptococcus mitis B6]
 gi|288908140|emb|CBJ22981.1| response regulator [Streptococcus mitis B6]
          Length = 210

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVAAGKLAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +  +    D ++ S++P + V     +       V+  
Sbjct: 15  IQNYLNRKLKSYGDLKYAYLIMNKKKPT--DVVIISNYPSEWVEIYRNNNYQHIDPVILT 72

Query: 105 PTELFCPVFHTLPENITP------------PAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P        I+                + N Y  +  D A     L  +F + R
Sbjct: 73  AINRISPFSWDDDLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPANNLATLSFMFEENR 132

Query: 153 IILRDRL-----WEIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWIS 198
               + +      ++ +L                    +    +    + RE E L W S
Sbjct: 133 SGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNRNNSKSQEPNLFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 193 MGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|328885811|emb|CCA59050.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 260

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
               + +    D       +   +     +  + E   GA    L R        LD  +
Sbjct: 44  PDAPTRILLADDHALVRGGVRLILDAEPDLTVVAEAADGAEAVALARTQDVDLAVLDISM 103

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R ++  +             L   ++              + Y   +    
Sbjct: 104 PRMTGLQAARELSRLK--------PELRILILTMYDNEQYFFEALKAGASGYVLKSVADR 155

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +             I      E  L+  Y  +  +       K    T RE E L  ++
Sbjct: 156 DLVEACRAAVRDEPFIYPGA--ETALIRTYL-DRAEQGRPLPDKAV--TEREEEILKLVA 210

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG +S EI  +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 211 EGHSSKEIGDLLVISPKTVERHRANLLQKLGMRDRLELTRYAIRVGLI 258


>gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 218

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L +R      +                    G S   +    
Sbjct: 3   IKIILIDDHTLFRSGIKALLSRQSDFEVIGEAAD---------------GLSGVKMAEQL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +     ++        T +   V     +         
Sbjct: 48  KPDVVLLDLDMPVMNGREALAQILGVNPNQ--------TVIMLTVSEDSDDLTECMRIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
             +     +   +   +        +   +    +        ++         +    L
Sbjct: 100 RGFLLKNINADFLLDSIRKAVDGDNVFSPEMTTRL------VQSLISPSAPRTDQALSTL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE+E L +++ G ++  IA  L ++ +TV  ++ +++RK    +R  A  YAV++
Sbjct: 154 TPRELEILGYLAAGHSNKVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQH 210


>gi|21224729|ref|NP_630508.1| two-component system regulatory protein [Streptomyces coelicolor
           A3(2)]
 gi|256784115|ref|ZP_05522546.1| two-component system regulatory protein [Streptomyces lividans
           TK24]
 gi|289767994|ref|ZP_06527372.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|21902164|gb|AAM78436.1|AF425994_2 putative two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3127843|emb|CAA18909.1| putative two-component system regulatory protein [Streptomyces
           coelicolor A3(2)]
 gi|289698193|gb|EFD65622.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 224

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 11/228 (4%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S V  +    D           +     +  + E   G     LVR  +     +D  +
Sbjct: 1   MSGVLRVALVDDQALMRAGFRALLDAEEGVEVVGEAADGEQGVALVRAQVPDVALVDVQM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +A          L     +    +              + +     + A
Sbjct: 61  PVMSGIEATRRIAA------DPALAAVRVVILTNYGLDEYVFEALRAGASGFLLKDTEPA 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   + ++     ++       +                  G D  LT RE E     +
Sbjct: 115 DLLQAIDVVAHGEALLSPSVTRTLI---GEFVARPPDRSTAPGLDA-LTRREREVTALAA 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +++EIA  + IS  T   +I+  M K   + R+  + +A  + +V
Sbjct: 171 RGLSNEEIAAHMVISPLTAKTHISRAMTKLGARDRAQLVVFAYESGLV 218


>gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 16/228 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R           +  A ++     +    +        G     LVR        +D  +
Sbjct: 4   RVLLADDQTLVREAFAMLVESAPDMEVVGQA-----ATGRQAVELVRGARADLVVMDIRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +A          L     L    + T    +       + +       A
Sbjct: 59  PDLDGIEATRLIAA------DEDLAGVRVLVLTTYDTDENIVDALRAGASGFLVKDTRPA 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     ++       +        +  ++          L+ RE E LT + 
Sbjct: 113 ELLDAIRTVAAGDSLLSPGPTARLIQRFLRSPSAPETGGPEC-----LSDREREVLTLVG 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  + EIA  LG+S  T   +++ IM K A + R+  +  A  + +V
Sbjct: 168 RGLNNTEIAESLGLSPLTAKTHVSRIMGKLAARDRAQLVIVAYESGLV 215


>gi|256396212|ref|YP_003117776.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362438|gb|ACU75935.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 241

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 66/243 (27%), Gaps = 29/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S +  L   +  +  +                    GA    L    
Sbjct: 20  IRVILADDQPLIRSGLRVLINDAPDIEVVGEAGT---------------GAEAVRLAAAH 64

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S              +    F              
Sbjct: 65  TPDVAVMDIRMPEMDGIEATRRITESS--------DTTRVVMLTTFDDDEYVYAALRAGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + +      +  I   + +      II      ++  +A +              D  L 
Sbjct: 117 SGFLVKDMALDSILDAVRVTASGDAIIAPSVTRKL--IAEFAIRPDPGATAPRRGDKALL 174

Query: 187 ---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              T RE E LT +  G ++ EIA  L IS  T   ++A +  K   + R   +  A   
Sbjct: 175 DGVTDREREVLTLVGRGLSNGEIAEELFISAATAKAHVARLFTKLGARDRVQLVITAYEA 234

Query: 244 NIV 246
            +V
Sbjct: 235 GLV 237


>gi|254491566|ref|ZP_05104745.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463044|gb|EEF79314.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 214

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  + E   +    L    D    +                               
Sbjct: 6   TTVLLVDDHELVRAGFRRLLEDGDKFTVIAEAGSGEQAVQDF---------------NKH 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +   E             L   V               
Sbjct: 51  HPDVVVMDISMPGIGGVGAIERIIARE--------PSAKILVLSVHEDSVFTTRAMQAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + ++      I  +   ++ +         +           L+
Sbjct: 103 LGFIPKRSAPEEMLRAVEMVAQGKTCIAPEIAQQLAM---------QKLTGSENPIDVLS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++EGKT ++IA IL +S  TV  +  SI +K      +     A+R+ ++
Sbjct: 154 QREFEVFRLLAEGKTVNDIADILSLSPKTVGTHHTSIKQKLNVSNSAELARLAIRSGLL 212


>gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 211

 Score =  121 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 70/247 (28%), Gaps = 39/247 (15%)

Query: 1   MNFEIQQV-NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           M+     V  I++  +       +  L      +  +   +                G  
Sbjct: 1   MSMSQPNVIRILIADDHPIFRLALKKLLECERDITVVAQAED---------------GRE 45

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
              L          +D  +      D +  +            ++   +    +      
Sbjct: 46  ALTLFAQHRPDVTLMDLRMPIMEGADAIAAIRAK--------FKQARIIVFSTYDGDENI 97

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     Y     +   +   +  +    + I  +   ++                 
Sbjct: 98  YRGLRSGAKGYIFKGAEPHELLKAIRTVHKGQKYIPPNIAAKLAERLG------------ 145

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L  I++GK++ EI+  L I+ +TV  ++ +I  K     R+ A+  
Sbjct: 146 ---SSPLSNRELEVLRLIAKGKSNSEISQDLSIAESTVRFHLKNIFSKLDVGDRTQALVT 202

Query: 240 AVRNNIV 246
           A+   IV
Sbjct: 203 ALNRGIV 209


>gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  L + +D +               + ++               
Sbjct: 3   IRLLVADDHEVVRCGLKSLVSGTD-IEVAGEARTGEETVRMVTSV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  + L   D           L    +          A   
Sbjct: 47  NPDVVLLDIRMPEGDGLTTLGRIKLERPD--------LPILILSTYDNPTYVARAVALGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y        R+   +           RD L               +  ++   +  LT
Sbjct: 99  NGYVLKGDPRDRLVDAIHTAANGESAWTRDELRR-------VTGALATPRLNADVEVPLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G T+ EIA  L IS  TV  ++  I+RK     R+ A  +AVR  +V
Sbjct: 152 QRESEVLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVRKGLV 210


>gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
          Length = 224

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     M  + E   GA    LV         +D  +     
Sbjct: 6   RLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  S              L    F       +      + +         +   
Sbjct: 66  LGATEKIMTSH--------PEAKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +     +          L+ RE E LT + EG T+
Sbjct: 118 IRAVRDGDSVVAPSATRRLIERFIPRQGEGAATTTDPKLVETLSDREREVLTCVGEGLTN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  I+ K   + R   +  A    +V
Sbjct: 178 AEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV 220


>gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 238

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L  R  +       + +                         
Sbjct: 1   MRVLLIDDHALFRFGLQELLERRGIEVVAAVGESSTGLERVAET---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+R +            Q              + I       
Sbjct: 45  RPDVVLLDMRMPGLNGLELLRRLRA--------AHQSMPIAMLTTSAEERDVIDSLQSGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   L  +     ++  +     G+LA           V  G   +LT
Sbjct: 97  QGYLLKDMEPDALIAALGEIVQGRTVVASELT---GVLARAVRGESTPVPVVSGGAADLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  ++EG+++  IA  LGIS  TV  ++ +I+RK    +R  A   AV   +
Sbjct: 154 PREQEILCHLAEGQSNKTIARELGISEGTVKLHVKAILRKLDVHSRVEAAVIAVERGL 211


>gi|209695795|ref|YP_002263725.1| nitrate/nitrite response regulator protein NarP [Aliivibrio
           salmonicida LFI1238]
 gi|208009748|emb|CAQ80054.1| nitrate/nitrite response regulator protein NarP [Aliivibrio
           salmonicida LFI1238]
          Length = 203

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 34/228 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+V+  +       +  L +  D                         G     L+  D 
Sbjct: 3   NVVIVDDHPLMRRGIGQLLSFEDEFTLAGEASN---------------GTDAVALISKDE 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +          ++         V     +  T      +
Sbjct: 48  PDLVLLDLNMKGMSGLDTLHALRNEGVT--CPIV------ILTVSDNKQDIKTLIKAGAD 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +                     +       K   LT 
Sbjct: 100 GYLLKDSEPDELIALLKQAIQGDKAYSE-----------QVKICLEEGKNGDDKLSSLTA 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           RE+E L  +++G  + ++A  L IS  TV  ++ S+++K   K+R  A
Sbjct: 149 RELEILQNVAKGMRNKQVADKLFISEATVKVHMKSLLKKLNVKSRVAA 196


>gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 254

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 69/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA--------------- 124
           + P D           +   V         P   +  P   T                  
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLQTFITDMHKPVVRYLH 121

Query: 125 --GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
              M                 L  L      +  +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE ECL+W +EG T+ EIA  L  S  T+  ++ S M+K   K R  
Sbjct: 182 QKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 75/246 (30%), Gaps = 23/246 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   + IV+  +         HL  R  L   +       +W           GA  
Sbjct: 1   MDEKQNDIRIVVVDD---------HLVVREGLHMMLEIARGGFTWLGDA-----ADGAEA 46

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +V         +D  +      + +  +                 +    +      +
Sbjct: 47  VRVVEALQPDVVLMDLRMPGMDGLEAITQIQEQW--------PHIAVIILTTYDEDDLML 98

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y     D   +   +         +  + +  I +                
Sbjct: 99  RGLRAGACGYLLKDTDRETLFHAIRTAARGDIFLQPEVMARILVRTTDAF-HPTPSRSQA 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             + ELT RE + L  ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ A+A  
Sbjct: 158 EGESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVG 217

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 218 IKRGLL 223


>gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 217

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 20/211 (9%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           +G   +               ++ + +          S       V+ +  E   P   +
Sbjct: 5   LGFREWAYQVIRAEALPDEKPVILTTFSDAWRDHYIDSSYHLIDPVILKGPERLLPFTWS 64

Query: 116 L-------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-- 160
                                 G+                 + ++  +    L   L   
Sbjct: 65  SMSFGIEPTDEQKSFFAEAEEFGLGEGLGIPVHGAYGSLAMISMVAEEETRRLARMLHHH 124

Query: 161 --EIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
             ++ L++    N+ +              L+ RE ECL W++ GKT  EI++ILGIS  
Sbjct: 125 GEDVHLISLIFHNLARELMALGRCGRSPISLSPRERECLIWLANGKTRWEISLILGISEE 184

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  +  +I  K  T +R   I  AVR  ++
Sbjct: 185 TVKYHFKNIRAKFGTYSRHEIIIQAVRLGLI 215


>gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
 gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi
           E3_33 E1]
          Length = 212

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 37/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +       +     R + +A +            +  L            
Sbjct: 1   MSKIRVILADDHPLTRQGLKAYLEREENVALVGEAADGDEAWKLIEEL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +       L R +  ++             +    + +    +    
Sbjct: 49  ---KPDVALLDIRMPGADGITLARRIKENKLP--------VAAIMLTSYDSQQYVLASLK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T     +   +  +      +  +                           
Sbjct: 98  AGAKGFVLKTTSAGALMKAIQTVATGSLFLDSEVA--------------SVVGAQEELTE 143

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L   + G +S E+A  L IS  TV  ++AS+  K     ++ A+  A+++ 
Sbjct: 144 ALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALKHG 203

Query: 245 IV 246
           ++
Sbjct: 204 LM 205


>gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803]
 gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803]
          Length = 221

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 72/242 (29%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ IVL  ++      + ++    + +  +   +                        
Sbjct: 2   VEKIRIVLADDEPFVRKGLCYIIGMQEDMEIIGECENGQGVIST---------------T 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     +D  +      +  + +           L     +    F      +    
Sbjct: 47  LETVPDMVIMDIQMPDISGIEATKNIMDK--------LPNTKVVLLTTFDVQQYVLDGIR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +   +  G+  +     I                 N+ +          
Sbjct: 99  AGAVGYILKDTETEEMLDGIRAMNRGAMIYNSTTANHAFAQFLKYDNVPEEDSTANEYAE 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  ++ GK + EIA IL +S  TV  +I  I++K     R+ A   A+R  
Sbjct: 159 ALTKREIDVLQLLAYGKQNHEIAKILCVSEGTVKTHIHKILQKLEVTDRTQAAVMAIRQK 218

Query: 245 IV 246
           IV
Sbjct: 219 IV 220


>gi|27365565|ref|NP_761093.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37680289|ref|NP_934898.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|320155960|ref|YP_004188339.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus
           MO6-24/O]
 gi|13641466|gb|AAK31574.1| transcriptional regulator [Vibrio vulnificus]
 gi|27361713|gb|AAO10620.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|37199036|dbj|BAC94869.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|319931272|gb|ADV86136.1| DNA-binding response regulator, LuxR family [Vibrio vulnificus
           MO6-24/O]
          Length = 212

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V       D     + ++  +         T   G     +V+        +
Sbjct: 2   DKPIRVVIVDDHQVVLDGFMARLEMEPEIDVVG-----TASNGLEALDVVKQHKPDVVLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +                 L   +       +         Y    
Sbjct: 57  DISMPILNGIEATRMIKAEW--------PEAKILMLTMHDNREYIMKVMQEGAVGYMLKE 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +              +           +       +   L+ RE   L
Sbjct: 109 ISAEKMVQAIKTVNQGSTYFCESVTQTL---------FTQEIVPAAQRPNPLSRREEAVL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G +S +IA +L IS  TV  +  +I  K    + +    YA+   ++
Sbjct: 160 KLVAQGHSSKKIATLLEISYRTVETHRHNIKHKLDLNSTAELAKYALEQGLI 211


>gi|282899743|ref|ZP_06307706.1| orrA (Two Component Transcriptional Regulator, LuxR family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195358|gb|EFA70292.1| orrA (Two Component Transcriptional Regulator, LuxR family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 238

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 78/256 (30%), Gaps = 33/256 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +++I+L  + +     +  +      L  +            +               
Sbjct: 1   MSEISIILIEDHDLTRMGLKTVIQSHPGLKVIGEAANATQGLKLLETT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R     + +           L   +  T    +   A
Sbjct: 49  ---KPDVAVVDIGLPDMDGIELTRKFKRHQTEN---GQNNTKILVLTMDSTEESVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--- 181
              + Y      + ++   +   +     I    +  + L      +  ++ D       
Sbjct: 103 AGADSYYMKETSINKLTEAINATYAGNSWIDP-AIANVVLRRMRVQSPGEAGDKPKMVKI 161

Query: 182 -----------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                      +   LT RE+E L  I +G ++ +IA  L I+  TV  ++ +I+ K   
Sbjct: 162 EGLAIEYEQVLESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCA 221

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A   A+R+ +V
Sbjct: 222 DDRTQAAVRALRSGLV 237


>gi|253998833|ref|YP_003050896.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200921|ref|YP_004039579.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985512|gb|ACT50369.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312440237|gb|ADQ84343.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 210

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 17/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D       L   +     +    E   G     LVR + +    +D  +   
Sbjct: 1   MKKILLVDDHSIVRQGLRNLIELESDLEVTGEAASGIEAIKLVRSNTYDVVVMDISMPDK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +    L   +    VL          +      +         Y S   +   I 
Sbjct: 61  NGVDTLH--DLKHVNADLPVL------ILSGYAEEQYALNLMRNGCKGYLSKDAEPEEII 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R I  +       LA    N           +  L+ RE +    ++ G 
Sbjct: 113 SAIRAIANGKRYISSE-------LAELMTNELSHPTEKQLHET-LSDREFQVFFKLAGGL 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L IS  TV+ Y   I+ K + KT +    YA++N ++
Sbjct: 165 SATEIADELCISVKTVSTYRTRILEKMSLKTNADLTYYAIKNGLI 209


>gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 72/233 (30%), Gaps = 15/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + + R   V       +  + ++     ++            G      V         
Sbjct: 2   SDTDIRVLIVDDQMMVREGFSVLLNAMPGITVVGEA-----LDGRQALDQVAALRPDVVL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +   +             L    F              + +   
Sbjct: 57  MDIRMPEMNGIEATREIVARD--------ADAKVLVLTTFDLDEYVYQALRAGASGFLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                ++  G+ ++     ++       +    +  A   +       +  +LT RE E 
Sbjct: 109 DASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAETPRP--PALARIGDLTERETEV 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 167 LVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|149018085|ref|ZP_01834544.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168482621|ref|ZP_02707573.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|147931649|gb|EDK82627.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|172043787|gb|EDT51833.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|332203553|gb|EGJ17620.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 210

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKILPVLDAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|307325089|ref|ZP_07604293.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889235|gb|EFN20217.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 222

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 9/224 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +        + E   GA               +D  +   
Sbjct: 1   MTTVLVVDDQQLQRYGFRVLLDSIPETEVVGEAGSGAEAVRKTAELRPDVVLMDVRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +A +          R + L    F              + +         + 
Sbjct: 61  DGIEATRRIAETGG--------RSSVLVLTTFDVDEYVHAALRAGASGFLLKDARPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     +I       I    A      +       +   LT RE E L  I +G 
Sbjct: 113 AGIHAVAGGDAVIAPALTRRILDEYARHVPARRGDPGEDPRVASLTEREREILVAIGKGW 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA    ++ +TV  ++  ++ K   + R  A+ +A    +
Sbjct: 173 TNGEIAARFVVAESTVKTHVGRVLAKIGARDRIQAVIFAYDRGL 216


>gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 253

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 14/230 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D       +   +S    +  + +   A    L   +        + +  D    
Sbjct: 9   LLIVDDHPLFRQGVRWALSSEEDVQIVGDAASAEA-ALEWLEKAGPNFEPNAMLVDLNLP 67

Query: 86  LVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +  +    +  + Y  +            +  +           Y S       +   L
Sbjct: 68  GMSGLDLTRQVRRQYPSIGVVMLSM---HESDEQAFNALRAGAAAYRSKDVKPQALVDIL 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FELTGREVECLTW 196
             +     +I    L E   +A    + F++       D          L+ RE+E L  
Sbjct: 125 RRVTRGEYVINDVVLEE-PQVAKRVLSQFRNLPEATATDPAADFPIFTPLSEREIEVLER 183

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EIA  L IS  TV N+I+SI+RK +   R+ A+ +A+R   +
Sbjct: 184 IAAGGSNKEIADSLSISTQTVKNHISSILRKLSLNDRTQAVLFALRRGWI 233


>gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 215

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 31/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  + +     +  L  +   +  +      V    +M                   
Sbjct: 7   RVLLVEDQQIVRQGIKILLEQDKQIKVIGEATNGVEAIEQMME---------------HT 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R +        +  ++         F+     +       N
Sbjct: 52  VDVILMDVRMPDMNGIEATRKIKSQ-----WPNVRILM---LTTFNDDEYTLQSLKEGAN 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T D  ++   +      G ++  +   ++     + +              +L+ 
Sbjct: 104 GFLLKTADGKKLIDAIHSCMRGGLVLHDEVAAKVMPKLLHTSKREL--------SVQLSE 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE      I  G T+ EIA  L ++  TV NYI SI++KT  + R+    +AVR+ I
Sbjct: 156 RERVITALIGSGLTNKEIADELFLTIGTVKNYITSILQKTEQRDRTQLAIFAVRHGI 212


>gi|327404862|ref|YP_004345700.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320370|gb|AEA44862.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 218

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 67/192 (34%), Gaps = 17/192 (8%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
             H L     L +   +D  +      + V+         +         +   VF    
Sbjct: 41  FLHILPTLTTLPEIIFMDIDMPVLDGIEAVKQAKALYPQIH--------FIMITVFDDEE 92

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
              +      + Y      +A + + +        ++         ++A    N  ++ +
Sbjct: 93  RIFSAIQAGASGYLLKDESIANLHLAI------DNVLNFGAAPLAPMIAKKAYNFIQNQN 146

Query: 178 VHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  ++  L+ RE++ L  +++GK+   IA  L IS +TV  ++ +I  K    ++ 
Sbjct: 147 KESNIQEENSPLSSREMDILNCLAQGKSYTIIADELFISPHTVRKHMTNIYEKLHVNSKV 206

Query: 235 GAIAYAVRNNIV 246
            A+  A++   V
Sbjct: 207 EAVRLAMQKKWV 218


>gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
          Length = 219

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +                G+          
Sbjct: 16  TIMIVDDHPLMRRGIKQLLELDSNFNVIAEAN---------------CGSDAITEAAACQ 60

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     D           +   V     +         +
Sbjct: 61  PDVILLDLNMKGMSGLDTLKALRHEGID--------ARIIVLTVSDARSDVYAMIDAGAD 112

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   + L      +   +            A    S         ELT 
Sbjct: 113 GYLLKDSEPEILLENIRLAAKGEPVFSDE-----------VAQYLSSRHEQVNPFSELTE 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 162 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATILFLEN 216


>gi|50954584|ref|YP_061872.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951066|gb|AAT88767.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 225

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 10/224 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     +     +     +  + E + G     L          +D  + +   
Sbjct: 8   RILLADDQALVRLGFRMVLEAEPGLCVVGEAIDGVEAVRLAVETRPDVILMDVRMPALDG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  +              +    F              + +         +   
Sbjct: 68  IEATRRIVAAN--------PEARIIILTTFDLDEYAFGGLRAGASGFLLKDARPDDLTAA 119

Query: 144 LMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +      +        + L A       +S          LT RE E L  I++G T
Sbjct: 120 IRAVAAGDAAVSGRVTRAMLELFADRLPTTTESAAPGGDPAAALTPREREILLAIADGLT 179

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI     ++ +TV  ++  ++ K   + R  A+ +A  N ++
Sbjct: 180 NGEIGATFHLTESTVKTHVGRVLSKLHLRDRVHAVIFAYDNGLI 223


>gi|319744296|gb|EFV96660.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 217

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 77/246 (31%), Gaps = 34/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  ++ ++ IVL  + E     +                         + A  E +G + 
Sbjct: 1   MRIKMDKIKIVLVDDHEMVRLGLKSFL--------------------NLQADVEVIGEAS 40

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L       E + D +V      ++    A     K +             +    +  
Sbjct: 41  NGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAIL---VLTSYLDNEKIY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   T   A I   +  +                 +        K++D   
Sbjct: 98  PVIEAGAKGYMLKTSSAAEILNAIRKVARGE-----------QAIENEVDKKIKAHDKCP 146

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA
Sbjct: 147 ALHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYA 206

Query: 241 VRNNIV 246
            ++++V
Sbjct: 207 FQHHLV 212


>gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 11/220 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D           +     +  + E   GA+     R        +D  +      + 
Sbjct: 2   LVDDQALLRAGFRMVLGAQPDIRVVAEAGDGAAAVEAARSAEVDVVLMDVRMPVMDGVEA 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +  +         +RP  L    F              + +       + +   +  
Sbjct: 62  TRLICAAG--------ERPRVLILTTFDLDDYAFAALKAGASGFLLKDVPPSDLISAIHS 113

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++       +  L  +  ++     V       LT RE E L  ++ G ++ EI
Sbjct: 114 VHSGDAVVAPSTTRRL--LERFAVHLPSPGVVEQAALGGLTAREREVLVLVARGLSNMEI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  TV  ++  ++ K   + R+  + YA  + +V
Sbjct: 172 ADRLDLAEATVKTHLGRVLAKLGLRDRAQVVVYAYESGLV 211


>gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 220

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D        +  +S    +  +     G   +  VR        +D  +     
Sbjct: 3   DVLIADDQQVVRQGFELFLSGHPEIRVVGHAKTGVEAYEQVRALRPDVVLMDIRMPHGDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F                +     D   +   
Sbjct: 63  LTATREVLAE--------FPGTRVIVITTFDLDEYVFEALDSGAAGFLLKDADPEELSSA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKT 202
           ++ +   G ++       +  +  +             G D  L+ RE++ +  +S+G  
Sbjct: 115 VLTVAEGGSVLSPRLTSRL--IVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLG 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++IA  L + ++TV ++I++I +K   +TR   + +A RNN++
Sbjct: 173 NNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAYRNNVI 216


>gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 207

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +  L    +                         G   +     +
Sbjct: 1   MKVLIVDDDALIRDGLKVLLEMEEGFEVSGVAAN---------------GREAYERCVEN 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +          V+          F              
Sbjct: 46  KPDIVLMDVRMPVMDGVLGTKLIKE-HYQDIKVVI-------LTTFKDDEYIAEAARNGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  I   L ++     +  ++    +  +        K         F+LT
Sbjct: 98  EGYLLKNQSLDSIVDSLRVVGEGNTVFQKEVAGTLHAI-------LKGEKKKDPASFQLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E L  + EG ++DEIA  L ++  TV NYI++++ K   + R+    +
Sbjct: 151 KREFEVLKLVGEGLSNDEIAQKLFLTPGTVRNYISNLLVKLNLRDRTQLAIF 202


>gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 254

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 67/251 (26%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTVDQQMDCALLLASELGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP------------------ 122
           + P D           +   V         P   +                         
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLH 121

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
            + M                 L  L         +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE ECL+W +EG T+ EIA  L  S  TV  ++ S M+K   K R  
Sbjct: 182 QKMRSCNAIKLTRRERECLSWSAEGLTAREIADHLNRSVATVTLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002]
 gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002]
          Length = 232

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 73/247 (29%), Gaps = 32/247 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           NI+L  ++      V       + L  +   +        +   T               
Sbjct: 6   NILLVDDEPGVREAVQAYLEDDEALT-VTTAENATKAWDVLQTFT--------------- 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                   +V SD     V       + +     +    +F        + I       +
Sbjct: 50  ------PDLVISDIMMPQVDGYQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRD----------RLWEIGLLAAYQANMFKSYDV 178
            Y    F+   +   +  L  +   I                ++  +  +     +    
Sbjct: 104 AYLPKPFEPEELEAIVKNLLTREAAIAEQQDGGGSNLEGIAQDLREIKQFLGQQNQLVTT 163

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 164 PPPLKIDLTPREQSVLDLVAQGLMNKEIAKELETSVRNVEKYVSRLFSKTGTNSRTELVR 223

Query: 239 YAVRNNI 245
           YA+++ +
Sbjct: 224 YALKHGL 230


>gi|158318878|ref|YP_001511386.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114283|gb|ABW16480.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 225

 Score =  121 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G       R        +D  + +   
Sbjct: 4   RVLIVDDQALVRGGLAMVLRVHGDIEVVAEAGTGLEAIEAARQHRPDVILMDIRMPAMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 L    F              + +        ++   
Sbjct: 64  LEATSRILAEADWD-------VRVLILTTFDPDEYVYQALRAGASAFVLKDIPADQLAGA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G ++       +                   +   LT RE + +  ++ G ++
Sbjct: 117 VRTVADGGALLAPSITRRLI---GRFTERRAVGSAPSRRVERLTDRERDVVVAVARGSSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I   TV ++++SI+ K   + R+  + +A  + +V
Sbjct: 174 SEIAQELFIGPATVKSHVSSILTKLGLRDRTQVVVFAYESGLV 216


>gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 202

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     + +++ LD                G+   +           LD  +  
Sbjct: 1   MIVDDHPLMRRGIKQLLELDSNFDVVAEAN-----CGSDATIEAAKCQPDVILLDLNMKG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D ++ +     D           +   V     +         + Y     +   +
Sbjct: 56  MSGLDTLKALRNEGID--------ARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEIL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + L      +                     S D       ELT RE++ L  ++ G
Sbjct: 108 LENIRLASKGENVFSDAVT-----------QYLSSRDEQVNPFSELTERELDVLQEVARG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 157 MSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 199


>gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
 gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271]
          Length = 204

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 31/232 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + E     VS   +    +  +   +                G     L          
Sbjct: 2   DDHEMVRMGVSAYLSTQPDIEVVGEAEN---------------GRKGSELALQLRPDIIL 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D ++      +  R +                 +    F    +           Y   
Sbjct: 47  MDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T   + I   +   +    ++      ++        +  +        + +LT RE E 
Sbjct: 99  TSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLHE-DLTERESEI 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 151 LLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 202


>gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like
           protein [polymorphum gilvum SL003B-26A1]
 gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator,
           LuxR-like protein [Polymorphum gilvum SL003B-26A1]
          Length = 230

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 20/228 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++   S           +G   +               ++ + +P         +   + 
Sbjct: 1   MEDVASLEAAFSKSLWDLGFREWAYQVIRTDALPDEKPLILTTFPDAWYSHYIDNGYHRV 60

Query: 99  YNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             V+        P                          G+                   
Sbjct: 61  DPVILNGPSQVAPFTWSAMSFGMEPSPEQRRLFAEATEFGLGEGVGIPIHGARGSLAMAS 120

Query: 146 LL----FPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWIS 198
           ++          ++     ++ L++    N  +              LT RE ECL WI+
Sbjct: 121 MVSDHGARGLARLMSTVGKDVHLMSLAFHNHARELLALGRSGRTTVSLTRRERECLLWIA 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK++ EI+ ILGIS  TV  ++ ++  K        A+  A+   ++
Sbjct: 181 AGKSAWEISRILGISARTVYFHLDNVRAKMGVTNVYHAVVKAIMEGMI 228


>gi|282861398|ref|ZP_06270463.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564056|gb|EFB69593.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 226

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 12/226 (5%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V  +    D           ++    +  + E   G     L          LD  +  
Sbjct: 1   MVIRVLVADDQAVVRTGFVALLNTQQDIEVVAEAEDGTGAVRLAAELRPDLVLLDIRMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +  +              L    F          A   + +         +
Sbjct: 61  MNGIEAAREIVAASGG-------ATRALMLTTFGLDAYVYEALAAGASGFLLKDATFPEL 113

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+ ++     ++  +    +           +           LT REVE L  I+ G
Sbjct: 114 LHGVRVVARGHALLAPEITQRLIGE----FARQRISCPPDRSVDGLTAREVEVLVLIARG 169

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +IA  L I+ +TV  +I  +  K   + R+ A+  A    +V
Sbjct: 170 LSNADIAARLSITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215


>gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 66/219 (30%), Gaps = 14/219 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + +   G    LL +        +D  +     
Sbjct: 3   RLLLADDQALFRQGLASLLELEEDLSVVGQAQDGRDAILLTQTLQPDVILMDVRMPICDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F       T        Y   +   +++   
Sbjct: 63  VEATREIHQRFPWI--------RILVLTTFDEDEYIWTSLQAGALGYLLKSTPASQLAAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +L      +      ++                       L+ RE++ L  I +GK++
Sbjct: 115 IRMLHDGHFQLGPTIAPKVI-----AQLRPPPLKNEQNHLERLSDRELDVLNLIGQGKSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EI+ IL ++  TV NY++ ++     + R+ A  +A +
Sbjct: 170 REISQILHLTEGTVKNYVSQLLGSLGVRDRTQAALWAQQ 208


>gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus
           pseudintermedius ED99]
          Length = 209

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D +++     +    +           L     +    +    E         
Sbjct: 48  KPDLILMDLVMTDMDGVEATMQIKKD--------LPHIKVVMLTSYIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     I   +        +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKM-------RNRMKQRAELYE---LLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  IS+G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++ ++
Sbjct: 150 EREMEILLLISKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLI 208


>gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 12/225 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     +     +        + E   GA+              +D  +      
Sbjct: 4   ILLVDDEPLLRLGFRLVLESQPDFTVVGEAADGAAAISRTAELDPDVVVMDVRMPGMDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  S          R   L    F              + +         +   +
Sbjct: 64  EATREIVRSH--------PRSRVLILTTFDIDEYAFPGLKAGASGFLLKNVPPEDLISAI 115

Query: 145 MLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
             +     ++       +   +A    +   + +          LT RE+E LT ++ G 
Sbjct: 116 RAVAGGDAVVAPSVTRRLLDAMADRIPDTTPTGNTPTTGHGLERLTERELEVLTKLARGL 175

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 176 SNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIGLV 220


>gi|222151857|ref|YP_002561017.1| two-component response regulator VraR [Macrococcus caseolyticus
           JCSC5402]
 gi|222120986|dbj|BAH18321.1| two-component response regulator VraR [Macrococcus caseolyticus
           JCSC5402]
          Length = 207

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 76/239 (31%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +  + +  +           +                   
Sbjct: 1   MRVIFVDDHEMVRIGISSYLSMQEGIEIVGEASNGKEGIEK---------------TLNL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D +++     +    +           + +   +    F    E         
Sbjct: 46  KPDIVLMDMVMNEMDGIEATAQIKSQ--------MPKVKVVMLTSFIEDKEVYRALDAGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     IR  ++  +    +  ++ + ++                       LT
Sbjct: 98  DSYILKTSSAEEIRDAIIKTYQGESVFEKEVMMKM-------RARMNQKAELHD---MLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA +++++
Sbjct: 148 EREKEILLLIAKGYSNQEIADASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 206


>gi|325069082|ref|ZP_08127755.1| two-component system regulator [Actinomyces oris K20]
          Length = 243

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 11/230 (4%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             LA ++  +  +S            GA    L          +D 
Sbjct: 22  PIRVLIAEDQALLRTTLAALLEAEPGMSVVGLAED-----GARAVTLAGELRPDVVLMDI 76

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +          VL     L   +F      +         +     D
Sbjct: 77  QMPGLTGIEATRRICA------DPVLAATRVLILTMFEIDDYVLGALRAGACGFLLKDAD 130

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +     ++    L  +       A+   S     G+   LT R+ E L  
Sbjct: 131 PQSLVDAVRTVHEGQSLLSPQVLARLVARMPRTASTGTSRSTWTGEVEALTPRQREVLLL 190

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EI V LGI+R T  ++I +++ +   + R+  +  A    ++
Sbjct: 191 IARGLSNSEIEVELGITRATCRSHITALLARLGARDRAQLVIAAYEAGLI 240


>gi|168699457|ref|ZP_02731734.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 213

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 60/232 (25%), Gaps = 24/232 (10%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKL 74
           ++ R   V   P   D L  ++           M  + +   G +              +
Sbjct: 2   NKLRVFLVDDHPVVRDGLRVLL------DSEADMEVVGDAFDGETAVGRAAELRPDVVVM 55

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    +           ++                          Y    
Sbjct: 56  DVSMPGMGGIEATARIRA-----GCPNVRVV---ALTAHEDRKYVQQALQAGATGYVPKR 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              A +   +         +                            D  L+ REVE L
Sbjct: 108 AAAADLVGAIRHAAAGRTYLDPSVTGPYL---------SAEPATEATSDHGLSEREVEVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++ +IA  L +S  +V  Y    M K   ++R G + +AVR   +
Sbjct: 159 KQLTAGYSNKQIAARLEVSVKSVETYKGRAMEKLGIRSRVGLVQFAVRQGWL 210


>gi|326779789|ref|ZP_08239054.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660122|gb|EGE44968.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 244

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 14/227 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V     M  + E   GA    + R        +D  +      
Sbjct: 21  VLLADDQALLRSAFRVLVDSEPDMVVVGEAADGAQAVDMARASGADVVLMDIRMPGTDGL 80

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R ++          L     +    F      +       + +     +   +   +
Sbjct: 81  AATRMISA------DPELSAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPDELLNAI 134

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-----WGKDFELTGREVECLTWISE 199
            +      ++        GL+A + A    S +         +   LTGRE E L  ++ 
Sbjct: 135 RIAAAGEALLSPAATK--GLIATFLAQGGSSGEGLDSAEYAERLAALTGREREVLVQVAG 192

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 193 GHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 239


>gi|318057517|ref|ZP_07976240.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318081139|ref|ZP_07988471.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 226

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 61/230 (26%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D +AR       +         T   G                LD 
Sbjct: 7   PARVMVVDDHPMWRDAVAR------DLEAAGFELVATAGDGPQAVRRATATRPDVLVLDL 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      ++ + +                 L         + +         Y   +  
Sbjct: 61  NLPGLPGVEVCKRLVRER--------PELHVLVLSASGEHADVLEAVKSGATGYLVKSAS 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
              +   +        +        +       A   +      G +   LT RE E L 
Sbjct: 113 TEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPEAPRLTERETEVLR 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 173 LVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222


>gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 210

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 68/241 (28%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             ++   +++  +       +  L         +                    G     
Sbjct: 1   MVMKNYRVLIVDDHPLMRRGIKQLLGLDPWFTVVAEASD---------------GNEAIA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD  +      D ++ +     D           +   V  +  +    
Sbjct: 46  LALQHTPDVILLDLNMKGLSGLDTLKALRNESID--------ARIIVLTVSDSRSDVYAL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +  ++   +        +I               A+   S       
Sbjct: 98  IDAGADGYLLKDSEPEQLLEHIRAAAEGQNVISDA-----------VADYLSSRSEQHDP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 FAELTERELDVLQEVARGMSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAATVMYLE 206

Query: 243 N 243
           +
Sbjct: 207 H 207


>gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 213

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 61/231 (26%), Gaps = 25/231 (10%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   P   D L  M   D                GA    L          +D
Sbjct: 3   DPVRLLIVDDHPVVRDGLRGMFTGDPGFEVVGEA-----ADGAEALALAARHRPDVVLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +        +  +  S              L    + T  + +         Y     
Sbjct: 58  LRMPGMDGVTAIGRLVRSGST--------AKVLVLTTYDTDADVLPAIEAGATGYLLKDA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        ++       +       A               L+ RE+E LT
Sbjct: 110 PRDELVRAVRAAARGESVLSPAVAGRLMGRLRAPAEEP------------LSQRELEVLT 157

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ E A  L IS  TV  ++  +  K     R+ A+A A    ++
Sbjct: 158 LVARGSTNREAAAQLFISEATVKTHLLHVYAKLGVNDRAAAVAVAYDRGLL 208


>gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei]
          Length = 241

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             DLLA +            +      +   +        +   +      S++P    R
Sbjct: 9   AEDLLAGLDSARSEEEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWKR 68

Query: 89  CMALSEKDKYYNVLQRPTELFCPVF--------HTLPENITPPAGMDNRYCSLTFDVARI 140
               +       +L        PV                    G+   +   +FD    
Sbjct: 69  RYVEAGFLDVDPILAHGRRSQQPVVLAETLFASAHQMWVEAQSFGLRFGWAQSSFDAYGG 128

Query: 141 RIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L+     +   +      R+  +   A           +    +  LT REVE L
Sbjct: 129 MGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVL 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKTS EI+ IL IS +TVN ++ + + K  T  ++ A+  A    ++
Sbjct: 189 KWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLL 240


>gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 66/220 (30%), Gaps = 14/220 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   +S            G     L          +D  +      +
Sbjct: 4   VLIVDDHPVFRQGLRGLLSAMEIEVVGEASGGQEAVALAAELQPDVVVMDLQMPGGNGVE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +  +          R   L   +F       T        Y         I   + 
Sbjct: 64  ATRTIVRTS--------PRIGVLVLTMFRDDDSVFTAMRAGARGYLLKEAGAEEIGRAVH 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     I   +    +    A   +  ++         ELT RE E L  +++G+ ++E
Sbjct: 116 AVAAGEAIYGPEIARRVLTYFAGMPDPSRTAFP------ELTEREREVLELVAQGRGNNE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA IL +S  TV N++++I  K     R+ AI  A    +
Sbjct: 170 IAGILFLSGKTVRNHVSNIFMKLQVADRAQAIVRAREAGL 209


>gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
 gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family
           [Pyramidobacter piscolens W5455]
          Length = 215

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 75/239 (31%), Gaps = 37/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++IVL  +     + ++ L    + L  +            +  L               
Sbjct: 2   ISIVLADDHPLTRAGLAALINEEEGLNLLGEASDGKQAWEMIEKL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       + R +  ++             +    ++  P  +   +   
Sbjct: 47  RPDVALLDIRMPEMDGITVARKVKDAKLP--------TKVIMLTAYNAQPYIVAALSAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T  V  +   L  +   G  +                    S D    +  +L+
Sbjct: 99  RGFIVKTSAVMELTQALQSVIGGGIYLDSAIAN--------------SVDSASNELEQLS 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   S+G    E+A  L I+  TV  +++S+  K   K ++ A+  A++N I+
Sbjct: 145 PREREVLLLSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNKTEALIIALKNGII 203


>gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9]
 gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9]
          Length = 218

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + IVL  +     S +  L  R    A +                    G     L+ 
Sbjct: 3   QPLKIVLIDDHTLFRSGLKALLQRQSDFAVVGEAAD---------------GLEGVKLIE 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +          V      L   V     +       
Sbjct: 48  LVAPDVVLLDLDMPHMNGREALAQIVA--------VHPELAVLMLTVSEDGEDLAECMRL 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     +   +   +        ++  +   ++                       
Sbjct: 100 GARGYLLKNINAEFLLSSIRRAVTGDSVLSPEMTAKLV-----ARLRDPRPAASRPDVDS 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G ++ EIA  L ++ +TV  ++ +I+RK    +R  A  +AV N +
Sbjct: 155 LTPRERETLRHLARGASNKEIARSLDLAESTVKVHVQNILRKLNLSSRVQAAVFAVENEL 214


>gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 214

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 77/240 (32%), Gaps = 34/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++N++L  + E     +         +  +                              
Sbjct: 4   KINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGRD--------------------GI 43

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           DL  E + D +V      +L    A  E  K +   +         +    +        
Sbjct: 44  DLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAKIL---VLTSYLDNEKIYPVIEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T     I   +  ++     I  +             N  K +D H     +L
Sbjct: 101 AKGYMLKTSSATEILNSIRKVYRGEEAIETE-----------VDNKIKYHDSHPDLHDDL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 150 TARERDILALLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLV 209


>gi|289768636|ref|ZP_06528014.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698835|gb|EFD66264.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 227

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 16/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R   V       + +  ++ L   V             G     +V         +
Sbjct: 7   RRPARVVVVDDQTVVREGIVMLLGLLPGVDVVGAAGD-----GEEAVRVVAELAPDVVLM 61

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +                 +    +                Y +  
Sbjct: 62  DLRMPRCDGVEATRRIRSEHPGTQ--------VVVLTTYADDESLFPALHAGARGYLTKD 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I   +  +      +       +     + +               LT RE E L
Sbjct: 114 AGGDEIVRAVHSVLSGDAGLAPSIQRRL---LEWLSESEPRPTGPPEPPDGLTTRETEVL 170

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+EG T+ +IA  L +S  TV  +I ++  KT  K R+ A+ YA    +V
Sbjct: 171 VLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLV 222


>gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 226

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 73/241 (30%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +VL  +       +  L      +  +                    G     +V
Sbjct: 1   MNTIRVVLADDHRLFRDGLKRLLEMEADIEVVGEAKD---------------GYEAVAVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +         D  +       +V+ +  + ++  Y  +          F          +
Sbjct: 46  KQLQPHVLLFDVNMPRMDGVQVVKELHETCRNIKYVAI--------TAFDDEDHLAALSS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      +  +   +  +      +           A      F           
Sbjct: 98  VGIDGYVLKASGLVELLSAVRSVTRGENYVDPKV-------AGKLLTSFHRRREERDLLV 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L W+S+G ++ EIA+ + +S  TV N+++ ++RK     R+ A   A +  
Sbjct: 151 DLTPREREVLYWLSQGFSNAEIALKMVLSEKTVKNHVSHVLRKLELNDRTQAAVLAWKMG 210

Query: 245 I 245
           +
Sbjct: 211 L 211


>gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 5/194 (2%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +   L   ++ +  ++D ++       L    A     +     +         
Sbjct: 9   LEVVGEAGDGLEALEVLERVEVDVVLMDVRMPRLDGVEATRRIHERAGAPRVL---ILTT 65

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F       +      + +       + +   +  +     ++       +  L  +   +
Sbjct: 66  FDLDEYAFSALRAGASGFMLKDVPPSELVAAIRAVHSGDAVVAPSTTRRL--LDRFAPML 123

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +      +   LTGRE E +  +++G ++ EIA  L +S  TV  ++  ++ K   + 
Sbjct: 124 PGTGPATHPELDRLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRD 183

Query: 233 RSGAIAYAVRNNIV 246
           R   +  A    IV
Sbjct: 184 RVQVVVLAYETGIV 197


>gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           TA208]
 gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens
           LL3]
          Length = 210

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +                       G     L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASD---------------GQQGVDLAAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D ++      +  + +                 +    F    +         
Sbjct: 47  LPDVILMDLVMDGMDGIEATKQICAKL---NDP-----KIIVLTSFIDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +         +           A    +  +  +        LT
Sbjct: 99  LSYLLKTSKAAEIAEAIRAAAKGEPKLESKV-------AGKVLSRLRHSENQL-PHETLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 151 KRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 209


>gi|116620874|ref|YP_823030.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224036|gb|ABJ82745.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 64/246 (26%), Gaps = 29/246 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ IV+  +       +  L    +    +            +                
Sbjct: 21  PKIRIVVADDHPIFRDGLCRLLALEEDFEVVAQAQDGRQVLDVLQQ-------------- 66

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +        ++ + +++         +   +         E +     
Sbjct: 67  -HEPDILLLDLKMPGLDGLATLQRLQIAKN--------KTRVIVLTASDDKNEFVQAMKL 117

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-----QANMFKSYDVHW 180
             +           +   +  +      +       +                       
Sbjct: 118 GTSGIVLKQTATELLIKSIRKVHAGEIWLDSHTTAAVIRQFVANDETPAMAAPSQAPPTR 177

Query: 181 GKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++   L+ RE E +  +++G  + E+A  + IS  TV N++ +I  K     R     Y
Sbjct: 178 ERERSPLSQREREIVALVAQGFKNKEMAEKMFISEQTVKNHLHNIFDKLGVSDRLELALY 237

Query: 240 AVRNNI 245
           A+ NN+
Sbjct: 238 AIHNNL 243


>gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 66/221 (29%), Gaps = 12/221 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           ++    +  + E   GA   L           LD  +      +
Sbjct: 5   LVADDQAVVRTGFVNLLNTQEDIEVVAEAEDGAQAVLSAGETRPDLVLLDIRMPHKNGIE 64

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +  +              L    F          A     +         +   + 
Sbjct: 65  AAREILAASGG-------ATKILMLTTFGLDEYVYDALAAGAGGFLLKDATFPELLHAVR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++     ++  +    +  +A +         V    D  LT RE E LT I+ G ++ E
Sbjct: 118 VVAGGNALLSPEITKRL--IAEFVHARGSRLPVPAAGD--LTARETEVLTLIARGLSNAE 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I+ +TV  +I  +  K   + R+ A+  A    +V
Sbjct: 174 IAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 214


>gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 209

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 28/235 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +   ++ R   V   P   D L  ++  +  ++   +        G     L +  L   
Sbjct: 1   MTSTEQIRVLLVDDHPILLDGLVMLLECEPDIAVIGQA-----SDGEEAIALFQQHLPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  + +    +++  +        Y  ++         + T  E           Y 
Sbjct: 56  LLIDLRLPTISGIEVIASIRAD-----YPQVRVVVLST---YDTEEEIYQAVQAGAKGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  ++     I      ++                       L+ RE 
Sbjct: 108 IKGSTSDELLKAVRTVYQNQSYIPPSVSEKLV---------------RRMGAPTLSTREQ 152

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I+EGKT+ +I+  L I+ +TV  ++  I+ K     R+ AI  AV   IV
Sbjct: 153 EVLQLIAEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIVQAVNQGIV 207


>gi|21220978|ref|NP_626757.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|6752360|emb|CAB69738.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 227

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 10/221 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           V+    M  + E   G     L R        +D  +      +
Sbjct: 2   LLADDQNLVRAAFALLVASAPDMEVVGEAGTGRQAVELARARRADLVVMDVRMPDLDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +A          L     L    + T    +       + +       A +   + 
Sbjct: 62  ATRLIAA------DEDLAGVRVLVLTTYDTDENIVEALRAGASGFLVKDTRPAELLEAIR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +        +              L+ RE + LT ++ G  + E
Sbjct: 116 TVTAGDALLSPGPTARLIERFLRSPSALHPPGSGPD---CLSERERQVLTLVARGLNNTE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 173 IAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 213


>gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 210

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 80/238 (33%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     VS   +    +  +   +       R  AL               
Sbjct: 2   IQVLIVDDHEMVRIGVSAYLSAQPDITVVGEAENGKEAVERALAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D I+  +    +    A  E    +   +         F    +         
Sbjct: 47  -----RPDIILMDNVMPVMTGAEATVEILAAWPEAKIMMVTS---FLDDDKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T +  +I   +        ++  +         +   +  +  +     + +LT
Sbjct: 99  VSYILKTSNAKQIAEAIRKTMGGETVLEPEVT-------SKMMHRMRHGNSTPLYE-QLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +++GK + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +
Sbjct: 151 EREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208


>gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 211

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 37/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     + +S    + + +  +   +                G   + L+   
Sbjct: 3   IRVVLADDHPLTRAGLSAYLQQENSIELVGEAED---------------GEKAWELIVDL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +    + R +   +      V+          +      +       
Sbjct: 48  KPDVALLDIRMPGEDGVSIARRIKEEKL----PVIPVMLTS----YDAHQYVVASLRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +   G  +  +    +                       L+
Sbjct: 100 RGFILKTSTPQDLIRAIQTVVQGGLYLDSEVATVV--------------GDRELVPESLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   S+G +S E+A  L IS  TV  ++ASI  K   + ++ A+  A++  +V
Sbjct: 146 AREREVLVLASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGVV 204


>gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 215

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  ++    + ++ +   S  +  +               L               
Sbjct: 5   IRVVIADDEALIRAGLATILQASGDIEVIGEASTGEEALTVAQRL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   E             +    F              
Sbjct: 50  QPDVVCMDIRMPGGDGLEATRRIQQLEPAP--------AVIVITTFDMDEYVFGALEAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                    +  +  G+        ++       +       A   +   +       LT
Sbjct: 102 CGILLKDSSMTDLVEGVRRAALGEGLVDASLTRRV------IAEFTRRKSIFTSSSEVLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++C+  + +G +++EIA  L +  +TV  +++S M KT T  R   + +A RN +V
Sbjct: 156 PRELDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTHNRVQLVIWAFRNGVV 214


>gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 227

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 74/241 (30%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ IVL  +       +  L      +  +   +                G +   +V
Sbjct: 1   MRKIRIVLADDHRLFRDGLRRLLEMEKDMEVIGEAED---------------GDATVEMV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +       +V+ +                 +    F          +
Sbjct: 46  SALKPDVLLFDIHMPKKDGIQVVKDLKAMGCSP--------RFVAITAFDDDDHITALSS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      +A +   +  ++     +           A    + F           
Sbjct: 98  VGIDAYVLKASGMAELLSAIRSVYRGHSYVDPKV-------AGKLLSTFNRRREERDLLS 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L WIS+G  + EIA  + +S  TV N+++ I++K     R+ A  +A +  
Sbjct: 151 RLTPREMEVLYWISQGLNNGEIARKMVLSEKTVKNHVSHILKKLDLVDRTQAAVFAWKRG 210

Query: 245 I 245
           +
Sbjct: 211 L 211


>gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus
           A9635]
 gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus C427]
 gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus D139]
 gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus C160]
 gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus H19]
 gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus subsp. aureus M809]
 gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 217

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 10/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +++   M  +     G   +  V         +D  +    P    
Sbjct: 6   ADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSM----PPGES 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A S+    +   +        +F                Y        ++ + +  +
Sbjct: 62  GLIATSKIADSFPETKIL---ILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +  D      L+  + +N  +           L+ RE+E L  I++G  + EIA
Sbjct: 119 YKGETYV--DMKLTTSLVNEFVSNSNQDTANTSDPFKILSKRELEILPLIAKGYGNKEIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 177 EKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLL 215


>gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 246

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 63/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +       G+  +     +     KL  ++ S +P + V     +       V+  
Sbjct: 15  LRDYIDRKLSQFGSPEYAYTVVNKKNPSKL--LIISSYPDEWVNLYIANNLQHIDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFPKG- 151
             +   P        +                 + N Y  +  D       L L+     
Sbjct: 73  AFKRTSPFVWDENITLMSDLKVSKIFSLSKKYNIANGYTFVLHDHLNNLALLSLIIDSNM 132

Query: 152 ----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWI 197
                         + +L                 D             T RE E L W 
Sbjct: 133 KANLEEQFSSEKGNLQMLLIEINEQMYRLVQSVSVDKDGSEMGVSKATFTAREHEVLYWA 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA I+GIS  TV  ++ +++ K        AI   V   ++
Sbjct: 193 SMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELI 241


>gi|157150612|ref|YP_001449919.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075406|gb|ABV10089.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 214

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  + E   G     L          +D ++      
Sbjct: 7   ILLVDDHEMVRLGLKSYLDLQEDVEVVAESSNGREGVELALELRPDVIIMDIVMPEMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +              L    +    +           Y   T     I   +
Sbjct: 67  EATMAILETW--------PEAKILILTSYLDNEKIYPVLDAGAKGYMLKTSSADEILYAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 119 RKVARGEVAIETEVSKKVQHHRNHIELH-----------DDLTARERDILGLLAKGYENQ 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 168 RIADELYISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 209


>gi|326330817|ref|ZP_08197118.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951347|gb|EGD43386.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 209

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 68/240 (28%), Gaps = 37/240 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRW 66
           + IV+  +       V  +                         + +   G     LV  
Sbjct: 5   IKIVVADDHPVVRDGVVGVL-----------------LAQGFEVVGQAGDGEEALALVET 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +++  +   E         R   L    F T  + +      
Sbjct: 48  LHPDVLVLDLRMPGTSGVEVIERLRAKES--------RTGVLVLTTFDTDTDVVAAIEAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +        ++       +        +  +S     G   +L
Sbjct: 100 ATGYLLKDAPTTDLVEAVRATAAGETVLSPAVATRLA-------SRLRS----PGPSAQL 148

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E LT ++ G T+  IA  L +S  TV  ++  I  K     R+ A+A A    I+
Sbjct: 149 SPREREVLTLVARGTTNRVIAAKLFVSEATVKTHLGHIFDKLGVTDRAAAVARAYDRGIL 208


>gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
 gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein
           [Comamonas testosteroni S44]
          Length = 255

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 73/241 (30%), Gaps = 24/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V + L  ED    + +S    R      +                         L+  
Sbjct: 39  QPVRVFLVDEDSHVRNVISQELMRDPRTLLVGQASS----YREARKNIFLQDFDVLLI-- 92

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      +L+  + L   D           +           +     
Sbjct: 93  ---------DLSLGEGQGIELLESIQLKRPD--------VLSIAISASENDDAAMNALKR 135

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y             ++ +   G  I      +I     ++AN  +           
Sbjct: 136 GAVGYLVKNSWFGSYSQAVLEVANGGAAISPVVAKKIIPK-IFKANFHEESIFKHKSFES 194

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  I++GK S E+A  L IS  TV+ +I +I  K   +TR+ A+  A+   I
Sbjct: 195 LTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILIGI 254

Query: 246 V 246
           +
Sbjct: 255 I 255


>gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46]
          Length = 245

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 82/239 (34%), Gaps = 19/239 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDW 82
           L    ++L  +       +   ++      VG  H LL      D     +  ++ +  +
Sbjct: 7   LDLAREVLQAIHRTATPENVRDQLLRTLAGVGVEHVLLATLRICDAVPCDRRPTVFAGTY 66

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNR 129
           P +  R     +   +  V++   E       + P              +     G+   
Sbjct: 67  PDEWARRYYARDYILHDPVVRGVGERGSGFAWSDPGLCAPDDRAARRVLDEAGEFGLREG 126

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELT 187
           +      +     G+  +  +   +       + L+  Y        +          L+
Sbjct: 127 FTLPLLTLEGDTAGVSFVG-EKLDLSPAVRGMLTLVGTYALGQVLLLAKGETGPLAEPLS 185

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L W ++GK+  EIA  +GIS +    ++ ++ RK  T +R+ A+A  +R  I+
Sbjct: 186 PRERESLQWAADGKSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLGII 244


>gi|291303524|ref|YP_003514802.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572744|gb|ADD45709.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 217

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 29/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   +++ + L  +     + V                         +    E  G + 
Sbjct: 1   MNDTDKRLRVFLVDDHAMFRAGV----------------------RSELGEAVEVAGEAG 38

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            +       ++Q  D ++      D      L         ++        V     + I
Sbjct: 39  TVAEAITGIEKQLPDVVLLDVHMPDGGGRAVLERVRASRPDVKFL---ALSVSDAAEDVI 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y + T   + +   +  +     +        +                  
Sbjct: 96  GLIRAGARGYVTKTIAASELVAAIRRVAEGDAVFSP----RLAGFVLDAFASKSQAPASD 151

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +LT RE E L  ++ G    EIA  L IS  TV  ++++++RK     R     +A
Sbjct: 152 PELDQLTNREREVLRLLARGYAYKEIARELYISIKTVETHVSNVLRKLQMSNRYELSRWA 211

Query: 241 VRNNIV 246
           V   IV
Sbjct: 212 VDRRIV 217


>gi|221633789|ref|YP_002523015.1| response regulator uvrY [Thermomicrobium roseum DSM 5159]
 gi|221156063|gb|ACM05190.1| response regulator uvrY [Thermomicrobium roseum DSM 5159]
          Length = 221

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +       +  L      +A +               L              
Sbjct: 5   KIRVLLADDHPIVRVGLRALLEAEPDIAVVGEAGTADEAVELARTL-------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +  +   + +R +A                L   V       +      
Sbjct: 51  -QPDVAVLDISMPGN-GLEALRRIASLGLP--------TRTLILTVHAEERYLLPVLQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +   + L+      I +     +                       L
Sbjct: 101 GSGYVRKSSLHTDLVEAIRLVARGEVFIDQAAARTL----LQGYLDHARTGEVQDPAQLL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L   + G T+ EIA  L +S  TV  Y   +M+K     RS  + +A+R  ++
Sbjct: 157 SEREREVLRLTAAGYTAQEIADQLFLSPKTVETYRHRVMQKLGFSRRSELVRFALRIGLL 216


>gi|119714205|ref|YP_919347.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526114|gb|ABL79484.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 216

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R                ++  +  V             G     LV   L     +D  
Sbjct: 2   IRVLLADDQSLLRTGFRMILGAEPDVEVVGEAR-----DGEEAVALVDELLPDVVLMDLR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    +  R +            +    +    F       +      + +       
Sbjct: 57  MPNMDGIEATRRITA--------AHEAVRVVVLTTFDLDEYVYSSLRAGASAFLLKDAKE 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   + +    G +        +    A  A+   + D+       LT RE E    +
Sbjct: 109 DQLVAAIRVAADGGSLFSPSVTKRLIGRFAAPASAPVAADLPA-----LTNREREVWELV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EI   L IS +T   ++ASI++K   + R  A+  A  + +V
Sbjct: 164 ARGLSNAEITERLVISEHTTKTHVASILQKLHVRGRVQAVVLAYESGLV 212


>gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)]
 gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 219

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 8/220 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           +  +  M  + E   G     L R        +D  +       
Sbjct: 2   LLADDQALLRATFRILIDSSEDMDVVAEAADGRDAVELTRTHRPDIVLMDIRMPGTDGLA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +           L+    L    F T            + +         +  G+ 
Sbjct: 62  ATAEICA------DPALRGTRVLILTTFETDEHVARALRIGASGFLGKDVTAEELLDGIR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +        +  ++  V       LT RE E    +++GK+  E
Sbjct: 116 TVAAGDALLSAAATRSLITRFLDSPD-PRASPVPPEDLAALTAREREVTALVADGKSDKE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +S  TV  ++     K   + R+  +A+A R+ +
Sbjct: 175 IAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSGL 214


>gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 213

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +        + E   G          L     +D  +      
Sbjct: 4   ILLAEDQALVRQGIKMMIEQHPSFRVVAEVANGKEAVDAYEKHLVDLVLMDVRMPVMTGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D A +   +
Sbjct: 64  EATKVIRQ-----RDP---KAKVLILTTFADDEYAMEALRLGALGYLLKDADAANLLSSI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                 G  I      +   +     N          +  ELT RE   L  + EGK + 
Sbjct: 116 ESCLNGGISIDASVAGK---VVPRLINRPGQAPS-SMEMVELTSRERSILQLVGEGKNNQ 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV N++  I++K   + R+    +A+RN +V
Sbjct: 172 EIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAIRNGVV 213


>gi|310643281|ref|YP_003948039.1| transcriptional regulatory protein degu (protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
 gi|309248231|gb|ADO57798.1| Transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Paenibacillus polymyxa SC2]
          Length = 216

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +     S  S +      +  +                    G   + +V   
Sbjct: 2   IKIVLADDHAIVRSGFSMILNFQSDMEVVGTAAD---------------GIEAYTMVAKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  + K K          L   +               
Sbjct: 47  KPDILIMDLSMP-----PGESGLIATGKIKED--HPDTKILILTMHDDEEYLFHILKNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         + + +  +   G  I       +      +     +          L+
Sbjct: 100 SGYVLKNAPDEELLLAIRTIHGGGTYIHPKMATSL----VREFIKKDTTSQTEDPYEILS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++G  + E+A  L IS  TV    A IM K   K+R   + YA++  ++
Sbjct: 156 KRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLKSRPELVQYALKKKML 214


>gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 218

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
           E+R      +    D       L   +     +  + E   G                +D
Sbjct: 3   ERRDGAAIRVLLVDDHQVVRRGLRTFLEVQDDIDVVGEAADGEEGIARAEELRPDIVLMD 62

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + +R +                 L    F      +         Y     
Sbjct: 63  VKMPGIDGIEALRKLRGLGNP--------ARVLVVTSFTEKRTVVPALRAGAAGYVYKDV 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +     ++  +    +                  G+   LT RE E L 
Sbjct: 115 DPEALASAIRSVHAGHVVLQPEVADALL--------SQDEAGGGQGRGGSLTDREREVLG 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 167 LIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 216


>gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
 gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307]
          Length = 256

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 74/245 (30%), Gaps = 27/245 (11%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
             + + HL    D    +  L  T      +  L ++ G +H +        EQ      
Sbjct: 1   MQANLRHLLVTLDQATELSALQDT------IVRLRDHYGVAHMVYHWVSADGEQYG---- 50

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---------ITPPAGMD-- 127
              +P   V+     +  +   V+    + F PV     +                    
Sbjct: 51  CGTYPLSWVQHYVQKDYLRIDPVIIGCFKQFHPVDWKALDWSSKAAVAFRAEAMQAGVGN 110

Query: 128 NRYCSLTFDVARIRIGLMLLFP----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             Y       +       L                  ++ L A          +     D
Sbjct: 111 QGYSIPIRGPSGQFALFSLSNNTDDTDWAAFTESNRRDLILCAHSFNQKALEVETKRMPD 170

Query: 184 F--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+GRE++ LT+++ G +  ++A  L IS +T+  Y+ S   K        A+A AV
Sbjct: 171 PVKPLSGREIDVLTYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHAVARAV 230

Query: 242 RNNIV 246
              ++
Sbjct: 231 SEGLI 235


>gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754]
 gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315]
 gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224]
 gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948]
 gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3]
 gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30]
 gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A10102]
 gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A9765]
 gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC
           [Staphylococcus aureus A8117]
 gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754]
 gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819]
 gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796]
 gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           21193]
          Length = 217

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 10/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +++   M  +     G   +  V         +D  +    P    
Sbjct: 6   ADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSM----PPGES 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A S+    +   +        +F                Y        ++ + +  +
Sbjct: 62  GLIATSKIADSFPETKIL---ILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +  D      L+  + +N  +           L+ RE+E L  I++G  + EIA
Sbjct: 119 YKGETYV--DMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 177 EKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLL 215


>gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 218

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 63/228 (27%), Gaps = 18/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
           T+ V  L    D       L    +       L E   G +   L          +D  +
Sbjct: 7   TARVITLLVVDDHPVVRDGLRGMFASAPGFEVLGEAADGVTAVELTARLDPDVVLMDLRM 66

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +  +             R   L    + T  + +         Y        
Sbjct: 67  PGGGGVAAIAELIRLG--------ARSRVLVLTTYDTESDTLPAIEAGATGYLLKDAPRE 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +        ++       +       A   +           L+ RE E L  ++
Sbjct: 119 ELLTAVRAAADGRTVLSPAVASRLVSRVRTPAAPARE---------PLSVREREVLRLVA 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ EIA  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 170 RGTSNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGIL 217


>gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 438

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 18  QRTSFVSHLPTRSDLLA---RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----F 69
             T  +  L            ++ +D     +  +  L +  G     +           
Sbjct: 215 IVTCLIPTLHKEESFAQDKIHILVVDDQPIISDSLELLLDKYGF-RVSVANSGAQALKQC 273

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +E++ + ++       +     + +    +   +         F                
Sbjct: 274 EERQPNVVIMDIQMPKMNGITTMKKIKNRWPDTKIIMVTT---FEETSSVSEAIEAGAEG 330

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +     +   + L+   G ++ +D    +           +   +     +ELT R
Sbjct: 331 YVLKSVQPEELVAAIRLVHLGGTMLSQDVATRL---------FKEYSSMPKKPPYELTPR 381

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E++ L  + EG    EIA  L +S  TV NY +SI  K     R  A+  A+
Sbjct: 382 EMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 433


>gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
          Length = 213

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  + E     +         +  +                    G     L 
Sbjct: 1   MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASN---------------GREGVDLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 46  LALKPDVLVMDLVMPELGGVEATLEVLKKW--------KEAKVLVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D H     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVLKGELAIETE-----------VDKKIKAHDQHPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR
 gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR
 gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR
 gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR
 gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR
 gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR
 gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus]
 gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus
           A9781]
 gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224]
 gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus
           subsp. aureus C427]
 gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A10102]
 gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8117]
 gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein
           [Staphylococcus aureus subsp. aureus H19]
 gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family
           [Staphylococcus aureus 04-02981]
 gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus M809]
 gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8819]
 gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A8796]
 gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00]
 gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 209

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 79/239 (33%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D I+      D+    A ++  K    ++         F    E         
Sbjct: 48  -----KPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLM---LTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     I   +        +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|262282221|ref|ZP_06059990.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262262675|gb|EEY81372.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 210

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 66/222 (29%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  + E   G                +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYLDLQEDVEVVAESSNGREGVEQALELRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  +              L    +    +           Y   T     I   +
Sbjct: 63  EATMAILETW--------PEAKILILTSYLDNEKIYPVLDAGAKGYMLKTSSADEILHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 RKVARGEVAIETEVSKKVQHHRNHIELH-----------DDLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|282860391|ref|ZP_06269457.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564127|gb|EFB69663.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 222

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 74/229 (32%), Gaps = 15/229 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +     M  + E   G     LV         +D  +   
Sbjct: 1   MTSVLIADDQALQRFGFRMLLESQEDMTVVAEAADGTEAVHLVARHQPDVALMDIRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  S          R   L    F              + +         + 
Sbjct: 61  DGIEATRRILTSG--------ARTRVLIVTTFDLDEYAHDGLRAGASGFLVKDAMPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FELTGREVECLTWI 197
            G+  +     ++       +  L AY  ++  +      ++      LT RE E LT I
Sbjct: 113 SGIRAVASGDAVVAPSLTRRL--LDAYAHHLPSTPGARPERENPRIASLTEREREILTVI 170

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G T+ EIA  L ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 171 GQGWTNTEIATRLHLAESTVKTHVTRILAKTGSRDRVQAVILAYDTRLV 219


>gi|219667253|ref|YP_002457688.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537513|gb|ACL19252.1| two component transcriptional regulator, LuxR family
           [Desulfitobacterium hafniense DCB-2]
          Length = 217

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 72/246 (29%), Gaps = 29/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN ++    IVL  +     + +  L      L  +           R+  L        
Sbjct: 1   MNKKL---RIVLADDHAVLRAGLKVLLNAEPDLEVIGEASDGEEAIDRVDDL-------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      D +  +                 L   +        
Sbjct: 50  -------HPDLVLLDLTMPKLNGVDCIEELLKKH--------ADLKILVLTMHDDEEYLK 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +      I      E   +  +  +  +  +   
Sbjct: 95  AVLQVGAKGYVLKKAADVELLSAIRTVARGEMFIYPTMAAE--FVYRHLVS-PREPEKES 151

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K  +L+ RE+E L  ++ G T+ +IA +L +S  TV  Y A +M K     R+  + YA
Sbjct: 152 KKLKQLSERELEVLRNLALGHTNQDIADLLHVSVKTVETYKARVMEKLEMHKRAELVRYA 211

Query: 241 VRNNIV 246
           + N I+
Sbjct: 212 MENGII 217


>gi|326384821|ref|ZP_08206497.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196483|gb|EGD53681.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 229

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 12/224 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           +  T  +  + E   G       R        +D  +    
Sbjct: 8   TRVLVVDDEQLVRAGFRLLIDSTPDLTTVGEAGEGGEAVRAARRLRPDVVVMDIRMPGID 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +A  E      ++          F           G  + +         +  
Sbjct: 68  GLEATRLIADDEAAPRILIV--------TTFDHDEYVFAALRGGASGFLLKDTPPEELLE 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++       +    A       S          LT RE+E    ++ G +
Sbjct: 120 AVRTVARGDALLAPAVTRRLITEFARAPTAPTSRPAVLD---VLTERELEVFELVAVGLS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +   TV  +I  ++ K   + R   +  A    +V
Sbjct: 177 NGEIADRLHLGLTTVKTHIGRLLTKLDARDRVHLVIRAYETGLV 220


>gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
 gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442]
          Length = 570

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 16/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R   V       + L  ++     +             G     L          +D
Sbjct: 355 ERIRLCIVDDHSFIRESLHTILNGQEDLQVVGMAE-----DGEQAVELCESLKPDIVLMD 409

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             + +       + +        +  ++         F              + Y   + 
Sbjct: 410 LEMPNLDGIHATKIIKGK-----WPDIRVLILSM---FQDTERAKEIIRNGADGYLLKSI 461

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   + L++  G +I  D    +         +    D   GK+F LT RE+E L 
Sbjct: 462 DSRELAESIRLVYRGGTMINHDLFHRMWEENEETGLVESKSD---GKEFGLTKRELEVLN 518

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S+G     IA  L +S  TV NY +++  K   K R  A+  A    ++
Sbjct: 519 LLSQGSRYKTIASKLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDTGLL 569


>gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 215

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 76/238 (31%), Gaps = 29/238 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L         +                    G   FLL     
Sbjct: 5   RVLIADDHPMARMAIRSLLDPDPSFEVIGEAQN---------------GEEAFLLCGQIQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D ++            A  E  K Y  ++        V   + + IT       
Sbjct: 50  P-----DLVLMDINMPKWSGLEATREVKKAYPHIKVV---ILSVSDDVADLITAIQFGAQ 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +       L  L  +      +   E+     Y+    ++ D        LT 
Sbjct: 102 GYLLKNLEPDDWINYLHALLGEDS----ELTREMATRLMYRFRQEEATDEMVP--AVLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E + ++  GKT+ EI+  L I+ NTV N++ +I+ K     R    AYAVR+++V
Sbjct: 156 REREIVMYVGAGKTNREISEALIIAENTVKNHLKNILEKLQLANRVQLAAYAVRHHLV 213


>gi|303263546|ref|ZP_07349469.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|302647319|gb|EFL77543.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
          Length = 211

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                ELT RE + L  I++G  + 
Sbjct: 115 SKVAAGELAIEQEVSKKVEYHRNHMELHE-----------ELTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 240

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 18/239 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  +    D    +  ++       ++  +       +F+L        +    IV  ++
Sbjct: 1   MKEILRLIDDYQTIDSIESMGRLLEQLNHIVNS---EYFVLGVSFDPHIKNGRFIVVDNF 57

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCS 132
           P D               + +       P                 +++   G++     
Sbjct: 58  PADCREDSCNLGLMYVDPICKFGASNCMPSVWESSKQIDIHSQELFSLSHIQGIEQGISI 117

Query: 133 LTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQ---ANMFKSYDVHWGKDFELT 187
               +      L              D L    L+        +              LT
Sbjct: 118 PIHGLNGEVGMLSFATSDVIAYPTHTDVLLFAQLIVPLIVQNLSRLSHASQTEHSQAMLT 177

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++CLTW ++GK++ EIA I+  +  TV  ++++  +K     R  A+  A+    +
Sbjct: 178 NREIQCLTWAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRALLGGHI 236


>gi|150018684|ref|YP_001310938.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905149|gb|ABR35982.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 219

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 71/235 (30%), Gaps = 26/235 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+VL  + +     +  + +  + ++ +   +        +  +               
Sbjct: 2   INVVLVDDQQIVREGIKIILSLDNEISILKEAENGKQLLKILQEI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +   + +           +    F+     +       
Sbjct: 47  QPDIILMDIRMPFMNGVEATK-IVKEKYNNI-------KVIILTTFNEDEYVLQGIRNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDF 184
           + Y         I   +   +    ++      ++       +      +  +    K  
Sbjct: 99  DGYILKDARSHDIIKSIKAAYNGDILLDPAVTTKLIRAFNSISIDKQNSRIINKQKKKLE 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT RE++    +++G ++ +I   L ++  TV NY+ +I  K    +R+    +
Sbjct: 159 LLTQREMDVAKLVAQGNSNKDICHTLFLTEGTVKNYLTNIFEKLELSSRTELALF 213


>gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 211

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 73/235 (31%), Gaps = 30/235 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           NI+L  +       +  +  +   L  +   +  +     M                  +
Sbjct: 3   NILLVEDQALVRQGLKMMIEQDPQLKVVAEAENGLEALHEMEQ---------------HI 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R +        +  ++         F+     +       N
Sbjct: 48  IDLVIMDIRMPVMNGLEATRKIKE-----RWPDVKIL---ILTTFNDDEYAVQALKDGAN 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T +  ++   +      G  I  D   ++                    D  L+ 
Sbjct: 100 GFLLKTAEQQKLIQAIYSCMKGGMTIHEDVAAKMVP-------KLLQKSKQVRVDIPLSP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE+     + EGKT+ EIA  L +S  TV N+I  I++K   + R+    YA+++
Sbjct: 153 RELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207


>gi|297159648|gb|ADI09360.1| putative response regulator [Streptomyces bingchenggensis BCW-1]
          Length = 221

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 59/223 (26%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   G     L R        +D  +     
Sbjct: 4   RVVLADDQALLRATFRILIDSCSDMGVVAEAADGTEAVELTRAHHPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F T            + +         +   
Sbjct: 64  LAATTAVCS------DPDLSATRVLILTTFETEEYVARALRAGASGFLGKDVTADALLTA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +                   +   LT RE E +   +EG ++
Sbjct: 118 IRTVASGDALLSPLATRALITRFLATPAPGNHL-APPERLAVLTAREREVMALAAEGMSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV ++I   M K   + R+  +  A ++ +V
Sbjct: 177 HEIAERLVVSPLTVRSHIHRAMTKLHARDRAQLVVVAYQSGLV 219


>gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 217

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 56/222 (25%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L    +       L E   G     +V         +D  +      
Sbjct: 11  LVVVDDHPVVRDGLRGMFTAAPGFEVLGEAANGVDALAVVGELDPDVVLMDLRMPGGGGV 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +             R   L    + T  + +         Y         +   +
Sbjct: 71  AAIAELTRRG--------ARSKVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDELFAAV 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +       +                       L+ RE E L  ++ G T+ 
Sbjct: 123 RAAADGRSTLSPAVASRLMTRV--------RTPAADPAGTTLSAREREVLVLVARGTTNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++  +  K   K R+ A+A      I+
Sbjct: 175 EIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGIL 216


>gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
 gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL
           200]
          Length = 199

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 16/183 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D ++      +  R +                 +    F    +    
Sbjct: 31  LALQLRPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPV 82

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T   + I   +   +    ++      ++        +  +        
Sbjct: 83  IEAGATSYLLKTSKASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLH 135

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D +LT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R
Sbjct: 136 D-DLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFR 194

Query: 243 NNI 245
           + +
Sbjct: 195 HQL 197


>gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42]
 gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42]
          Length = 210

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     ++        +                       G     L    
Sbjct: 2   IRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASD---------------GQQGVDLAAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D ++      +  + +  +              +    F    +         
Sbjct: 47  LPDVILMDLVMDGMDGIEATKQICATL---NDP-----KIIVLTSFIDDDKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +         +           A    +  +  +        LT
Sbjct: 99  LSYLLKTSKAAEIAEAIRAAAKGEPKLESKV-------AGKVLSRLRHSENQL-PHETLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++EGKT+ EI   L I+  TV  +I +I+ K     R+ A  YA RN++V
Sbjct: 151 KRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLV 209


>gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 214

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 73/242 (30%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + +  + +     +         +  +                    G     L 
Sbjct: 1   MDRIRVAVVDDHDMVRKGLLAYLITEPGIEIVGEGSS---------------GQVAIELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + +      +D ++ +    +  R +                 +    +    +      
Sbjct: 46  KKEKPDVILMDLLMENGTGIEATREIIK--------FHPACKIIIITSYFDDEQVFPAIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T     I   +        +I           A+   N F+S       D 
Sbjct: 98  AGAYSYLLKTARAEDIIKAIEKAVQNEPVIEPKV-------ASKMMNRFRSPSKLPHDD- 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  + +G T+ EI+  L I   TV  ++++I+ K     R+ A  YA R+ 
Sbjct: 150 -LTDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNILGKLQVADRTQAAIYANRHG 208

Query: 245 IV 246
           ++
Sbjct: 209 VL 210


>gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 73/232 (31%), Gaps = 14/232 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            E++ R   V       + L  ++     +             G S   +          
Sbjct: 2   SEEKIRVLIVDDQRLMREGLRIILEGAPDIELVGEAEN-----GLSALQIAESQEPDVIL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +           +           L+RP  L    F T    I       + Y   
Sbjct: 57  MDIRMPVLDGIAATERVLQQ-------ALKRPRILLLTTFDTPELVIEGMRAGASGYLLK 109

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +  +     ++         LLA+ Q     +  +   +   LT RE+E 
Sbjct: 110 DCSAEELCTAIRAVARGQILLQASSAA--QLLASLQTKPVAAAPLSVAEQLGLTTRELEV 167

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  ++ G+++ EIA  L +S  TV  +I  I  K   + RS AI  A +  +
Sbjct: 168 LRLVTLGQSNTEIAAALFVSDATVKTHINHIFSKLGARNRSQAIIKARQLGL 219


>gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 25/240 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + + L  +       +  L ++   L  +            +  L          
Sbjct: 1   MTATPITLFLIDDHTLLRRGLVALLSQYGDLCVVGEAGDAAEALRLLPQL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD+ +      D +  +  +         Q    +   V     +    
Sbjct: 51  -----RPDVILLDNHLPGVRGVDAIAGLREAS--------QGSRVIMLTVSEDGEDLGAA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-- 180
                  Y   T D   +   +        ++  + + ++      Q             
Sbjct: 98  LRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMPQE 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+ RE E L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 158 DPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYA 217


>gi|254000165|ref|YP_003052228.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|253986844|gb|ACT51701.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
          Length = 232

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 63/239 (26%), Gaps = 28/239 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
                + L  +       V  +         +                    G+   LL 
Sbjct: 21  ASPTKVFLIDDHALFRKGVGQMIEADPAFRVVGEAAS---------------GSEGLLLA 65

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + +R               +   +   V     + +    
Sbjct: 66  PPLQPDVVLIDLNMKGLNGIETLRRFKTESS-------LQARFVVLTVSDAEDDLLEALR 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L  +     +I       +         + +        D 
Sbjct: 119 AGADGYLLKDMEPEDLCASLKKVISGMTVIQDSLTEVLKQ------ALLEPRTRKADDDV 172

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE E L  +++G  +  IA  LGIS  TV  +I  ++ K    +R  A  +A R 
Sbjct: 173 ALTDREQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRK 231


>gi|188586689|ref|YP_001918234.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351376|gb|ACB85646.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 212

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 64/242 (26%), Gaps = 36/242 (14%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E +++++++  + E     +       + +  +                    G     L
Sbjct: 5   EGEKISVLIVDDHEMVRLGLRSYLETQEDIEVVAEACD---------------GQEGIDL 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R    Q   +D ++         R +                      +    +     
Sbjct: 50  AREYQPQVILMDLVMDGMDGIQATRELQGEGFKIV----------VLTSYVDDDKVFPAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   T D   I   +                           +      +    
Sbjct: 100 EAGAYSYILKTSDAEDIAKCIRKASEGKPSFE-----------GQVTKLMMERRENESAY 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  + +G T+ EIA  L I   TV  ++++I+ K   K R+ A  YA   
Sbjct: 149 LNLTNREKEVLRLLGKGFTNQEIADELYIGIKTVKTHVSNILDKLELKDRTQAAIYAKDY 208

Query: 244 NI 245
             
Sbjct: 209 GY 210


>gi|169349619|ref|ZP_02866557.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552]
 gi|169293694|gb|EDS75827.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E     +  +    + +  +      +     +                  
Sbjct: 5   IKVVIADDQELIRESLKIVLGTHEDIQVVNIAADGLEVLDILKR---------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               + +D I+       +   +      + Y        +    F       +      
Sbjct: 49  ----ESVDVILMDIRMPRMDGVVCTKAVKEQYP---NTKIIILTTFDDDDFVFSALKYGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   ++ ++  G +I  D   ++  + +  +    S  V      E++
Sbjct: 102 SGYLLKGVGMDELYQSILTVYRGGGMINPDIATKVFGMFSKMSQNNYSIQVDETNIDEIS 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  +  G ++ EIA  L +S  TV NY++SI+ K   + R+    +AV+  
Sbjct: 162 KPEWKVIQQVGYGFSNKEIAQKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 218


>gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 16/227 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L  ++     +             G     L           D  
Sbjct: 3   IRVLIADDQPIVRTGLTMLLDAQPDIEVVGAA-----ADGREAVRLALQLRPDVGLFDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +A  +      ++          F                +       
Sbjct: 58  MPLMDGIEATRRLAGPDVTDPLPIV------VITTFDLDEYVHEALKAGARGFLLKDAGP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +        +I       +  +AA+             +   LT RE E L  +
Sbjct: 112 ALLTQAIHAAADGNALIAPSVTVRL--IAAFAQTHTSPPPQPIER---LTAREEEVLVSV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++G+T++EIA  L I+++TV  ++AS+MRK   + R     +A    
Sbjct: 167 AQGRTNNEIASELYITQSTVKAHLASLMRKLGARNRVEVAMWAHETG 213


>gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 222

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 71/229 (31%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       +  + ++     +             G      V+        +D  
Sbjct: 6   IRVLIVDDQAMVREGFSVLLNAMPGIEVVGEA-----VDGRQAVSQVKALRPDVVLMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  R +  ++             L    F              + +       
Sbjct: 61  MPELNGIDATREIVAAD--------ADAKVLVLTTFDLDEYVYQALRAGASGFLLKDASA 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++  G+ ++     ++       +    +  A   +       +  +LT RE E L  I
Sbjct: 113 RQLADGVRVVASGEALLAPTVTRRLITEFSKIAEAPRP--PAMARIGDLTERETEVLVLI 170

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L ++ +T+  +++ I+ K   + R+ A  +A    +V
Sbjct: 171 AQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLV 219


>gi|284041733|ref|YP_003392073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945954|gb|ADB48698.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 225

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 72/243 (29%), Gaps = 28/243 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E + + +++  +D      +  L      LA +                    G +    
Sbjct: 6   EREPIRLLIADDDGLVRGGLRTLLANEPGLAVVGEAAD---------------GFAAVRA 50

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            +        +D  +      +  R +             R   L    F          
Sbjct: 51  AQELDPDVVLMDVRMPRLDGIEATRRVVAGG---------RARVLVVTTFEHDDYVYEAL 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +     +   +   + ++     ++       +   +          D      
Sbjct: 102 RAGASGFVLKRAEPEELVQAVRIVAGGESLVFPQLTRALIARSVQPGA----GDGGARLL 157

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G ++ ++A  L ++ +TV  ++A I+ K A + R+ A+  A  +
Sbjct: 158 TVLTEREAEILRLVARGMSNADVADELVLAVHTVKTHVARILAKLAVRDRTQAVVVAYES 217

Query: 244 NIV 246
             V
Sbjct: 218 GFV 220


>gi|86138963|ref|ZP_01057534.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           MED193]
 gi|85824194|gb|EAQ44398.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           MED193]
          Length = 255

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 21/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  +            +  + +     H +    D   +          +     +   
Sbjct: 26  ILTALDATQTLEGLQSIIECICKVFAIDHAMYHWVDSAGDHYY----FGTYSEAWTQQYQ 81

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAG-MDNRYCSLTFDVARI 140
                +   V+    + F PV     +          +     G  +  Y          
Sbjct: 82  EKNYTRIDPVVIGCYQRFHPVDWRRLDWSSKPAREFFDAAMEHGVGNQGYSIPIRGPNGQ 141

Query: 141 RIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECL 194
                +                  ++ L+  Y          D    +   L+ RE++ L
Sbjct: 142 FALFSVSHHCDDAAWDKFCDQNSRDLILIGHYFNRKALEFEPDRAPEQAQPLSPRELDAL 201

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +  G +  ++A  L IS +T+  YI S   K      + AIA AV   ++
Sbjct: 202 TLLGIGYSRAQVAQTLSISEHTLRVYIESARFKLGALNTTHAIARAVSCGLI 253


>gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 224

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 15/235 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +      +   V   P   D +AR    +            T   GA      +      
Sbjct: 1   MTDRQTLKVMVVDDHPMWRDAVAR-DLTEAGFDVV-----ATAGDGAQAVRRAKAVAPDV 54

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +       + + +           L     L         + +         Y 
Sbjct: 55  LVLDLNLPEMPGVQVCKELVG--------ALPGLRVLVLSASGEHADVLEAVKSGATGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGRE 190
             +     +   +        +        +       A+           K  +LT RE
Sbjct: 107 LKSASTEELTDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPGPPAGADEPKAPQLTDRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 167 TEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 221


>gi|312140502|ref|YP_004007838.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311889841|emb|CBH49158.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 220

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +          L      ++ +       +    +  L               
Sbjct: 3   ITVFIADDQAMVRQGFGALLGAQPDISVIGDAPDGRAAVTEVKRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +  +  +           L    F              
Sbjct: 48  RPDVVLMDVRMPEMNGLDAAREILAAAME------PPVRVLMLTTFDIDEYVYEALGIGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +            +      +   LT
Sbjct: 102 SGFLLKDAPAEELIRAVRVVAAGEALLAPSVTKRLI---EDVTRRRAAPRRRDRQLETLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G ++ EIA  L ++  TV  ++  ++ K + + R+ A+  A  + +V
Sbjct: 159 PREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGLV 217


>gi|307708226|ref|ZP_07644693.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307615672|gb|EFN94878.1| response regulator [Streptococcus mitis NCTC 12261]
          Length = 210

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEATNGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +        +   +         +    + +         Y   T     +   +
Sbjct: 63  DATLAILKE-----WPEAKILIVSS---YLDNEKIMPVLNAGARGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205


>gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 229

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 68/242 (28%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +     +    + +    +  +      V     + +             
Sbjct: 1   MAPIRVMLVDDQALLRTGFRMVLSAQPDMEVVAEASDGVEAIEALRSTA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  +E             L    F       T   
Sbjct: 50  ----TDVVLMDVRMPRLDGVEATRRICAAENPP--------KVLILTTFDLDEYAFTGLR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       + +   +  +     ++       + L          S         
Sbjct: 98  AGASGFMLKDVPPSELLTAIRSVHSGDAVVAPSTTRRL-LDRFAPMLPDASAAPRHAGLD 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E +  +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    
Sbjct: 157 RLTGREREVMVLVAQGLSNGEIAAHLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
 gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium
           sp. AT7]
          Length = 210

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +    +  +   +                G   +      
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLSIQSDIEVIGEAEN---------------GKIGYEKALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +      K +   +         F    +         
Sbjct: 47  RPDVILMDLVMDVMDGIESTKAI-----MKDWPEAKIVIVTS---FIDDEKVYPALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    I+  +   +  ++A        +         +LT
Sbjct: 99  ASYILKTSTASTIANAIRSTYKGEIILEPEVTGK--MMARL------TKKQVHQLHDDLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  IS+G ++ EIA  L I+  TV  ++++I+ K   + R+ A  YA +++++
Sbjct: 151 NREQEILMLISQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHHLI 209


>gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 212

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 67/222 (30%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +        + E   G     ++         +D  +      
Sbjct: 6   IILVDDHSLFRNGLRGLLERCAACRVVGEAASGEEFLAMLGGVDADVVFMDFAMPGLDGA 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                      D           +   +F                +     D+  +   +
Sbjct: 66  QTTERALAQRPD--------LKIITLSMFGEESYYSRMVEAGARGFLLKDSDIGDVIEAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G       L  +           ++ +    +  +L+ RE E L  +  G ++ 
Sbjct: 118 ETVAAGGSYFSPQLLSSLT-------GRMRTREDAADE--QLSSREREILVAVCRGLSNQ 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS+ TV+ + A+I+ KT  K  +  + YA+RN IV
Sbjct: 169 EIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 210


>gi|262201875|ref|YP_003273083.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262085222|gb|ACY21190.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 218

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 14/219 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              D       +   +     +  + E       L       Q  + D +V         
Sbjct: 14  LVDDHALLREGIRSLLDREAAISVVGEAGSYDAALA----EVQRCRPDVVVVDLKLTAGT 69

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               L    +          L    F      +         Y     D   +   +  +
Sbjct: 70  EYEGLRLITEISGRHPGVATLVLTTFLDDDLVVRAVRAGARGYVVKDVDTTELVRAIQAV 129

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           F  G          +           +S      K   LT RE E L  +++G ++  I 
Sbjct: 130 FGGGSAFDPRSAAIV----------LRSVSGDVDKPEALTDREREVLRLLADGLSNKRIG 179

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS +TV  +I +I+RK     R+ A+  A +  ++
Sbjct: 180 QTLFISESTVKFHIRNIIRKLGVSKRTDAVYIASKRGLI 218


>gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 205

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 64/220 (29%), Gaps = 19/220 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +     +  + E   A   +           +D ++      
Sbjct: 3   RLLLADDHAIVRAGLRALLESESDIEVVGEAGTAEEAIAFCATTP----VDLVLMDLRFG 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +  +                   + T  + ++      + Y         +   +
Sbjct: 59  PGKTGVDATRAVCALPNPPHVLV--VTNYDTDADILSAVEAGASGYLLKDTPPVELLSAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++          +A+      +        +  L+ RE+E L  ++ G+++ 
Sbjct: 117 RAAASGDSVLSPA-------IASKLMTRVRK------PETSLSPREIEVLKLVAAGRSNR 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EI   L +S  TV +++  I  K   K+R+ A+A A    
Sbjct: 164 EIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELG 203


>gi|237665880|ref|ZP_04525868.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237658827|gb|EEP56379.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 227

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  + +  + +     +         +                 D
Sbjct: 2   IKVLIADDQELIRESLKIVLSADEKIHVTGTVSNGSDVIKSI---------------SKD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +  S     Y  ++    +    F              
Sbjct: 47  KPNVILMDIRMPQMDGVQCTKVIKES-----YPDIKI---IVLTTFDDDEYIFDALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +  G+  +   G ++  D   ++  L +  A       V+      L 
Sbjct: 99  SGYLLKGVSMKELIEGIHTVAGGGAMMNPDIATKVVRLFSRLAKGNLGIKVNSENVKSLG 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ EIA +L +S  TV NY++ I+ K   + R+    +AV N 
Sbjct: 159 KTEWKVIVQIGRGLSNKEIAKVLFLSEGTVRNYLSQILNKLELRDRTQLAIWAVENG 215


>gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 16/230 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V       D L  ++ L   +             GA    LV         +D  +
Sbjct: 4   RVLVVDDQTVVRDGLVLILGLLPDIEVVGAA-----ADGAEALRLVDEHHPDVVLMDLRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +    +  +        +Q         +                Y +      
Sbjct: 59  PRMDGAEATGRIKAAH-----PEVQIV---VLTTYSDDESVFAALKAGARGYLTKDAGGE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSY-DVHWGKDFELTGREVECLT 195
            I   +  +      +  D    +   L +  + +  +            LT RE E LT
Sbjct: 111 EIAAAIAAVRDGAAQLAPDVQRRLVDALASGDKTDTSEPAKPPRTDLPDGLTKRESEVLT 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+ G+++ EIA  L IS  TV  +I ++  K A + R+ A+ YA R+ +
Sbjct: 171 LIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQAVTYAYRHGL 220


>gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist
           Chlorolactone (Cl)
 gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum]
          Length = 265

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 19/225 (8%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLVRCMALS 93
             ++        +  +     +   LL      +  Q Q+L+ +++  +P D +      
Sbjct: 32  GHIETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWLDQYMKE 91

Query: 94  EKDKYYNVLQRPTELFCPVFHT------------LPENITPPAGMDNRYCSLTFDVARIR 141
              ++  +L+       PV                        GM +             
Sbjct: 92  NYAQHDPILRIHLGQ-GPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASERNNI 150

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTWIS 198
             ++ +  +        +  +  L  +         +       +  L+ RE +   W+S
Sbjct: 151 GSILSIAGREPGRNAALVAMLNCLTPHLHQAAIRVANLPPASPSNMPLSQREYDIFHWMS 210

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            GKT+ EIA IL IS  TV  ++A+++RK     R+ AI   +  
Sbjct: 211 RGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMHL 255


>gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 256

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 67/226 (29%), Gaps = 6/226 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA+    VR        LD  +     
Sbjct: 4   RVVVADDQELVRSGFALILDVQPDIEVVAEVGDGAAAVEAVRRHRADVALLDVRMPRMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
            +  R +      +             +    F +            + +         +
Sbjct: 64  IEACRAIGAERAGRGGGSGDVGGACRVVMLTTFDSDEYVYEALHAGASGFLLKDVRRDDL 123

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + ++     ++       +  +  Y             +   LTGRE E L  ++ G
Sbjct: 124 VHAVRVVARGDSLLAPSVARRL--VEQYTRPPAARAPRPDPRLGLLTGRERETLLLLARG 181

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L +S +TV  ++ +++ K   + R  A+  A    ++
Sbjct: 182 LSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRVQAVICAYETGLI 227


>gi|302559865|ref|ZP_07312207.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477483|gb|EFL40576.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 228

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 70/233 (30%), Gaps = 17/233 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +     +  L E   GA    +          +D  +   
Sbjct: 1   MTTVLIADDQPLQRFGFRMLLESQDDLTVLGEAANGAEAIRMTAELSPDVVLMDVRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGIEATRRIVATG--------DRTRVLILTTFDLDEYAYAGLRAGASGFLVKDAQPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIG-LLAAYQA-------NMFKSYDVHWGKDFELTGREVEC 193
            G+  +     ++       +    A +         +   +      +   LT RE E 
Sbjct: 113 SGIRSVASGDAVVAPSLTRRLLDAYARHLPTPGPDSDSDAPTAGHTDARLDALTEREREI 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LT +  G T+ EIA  L ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 173 LTVVGRGWTNTEIATRLHLAESTVKTHVGRILAKTGSRDRIQAVILAYDTKLV 225


>gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi]
          Length = 250

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +  +    D ++ S++P + V     +       V+  
Sbjct: 15  IQSYLNRKLKSYGDPKYAYLIMNKKKPT--DVVIISNYPTEWVDIYRNNNYQHIDPVILT 72

Query: 105 PTELFCPVFHTLPENITP------------PAGMDNRYCSLTFDVARIRIGLMLL----- 147
                 P        I+                + N Y  +          L  +     
Sbjct: 73  AINKISPFSWDDDLVISSKLKFSRIFNLSKDYDIVNGYTFVLHSPGNNLAALSFMIEEHR 132

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMF--------KSYDVHWGKDFEL-TGREVECLTWIS 198
             +   I+++   ++ +L                ++ +    ++ +L + RE E L W S
Sbjct: 133 SEELEEIIQNNKDKLQMLLISAHEKLTSLYREMSRNRNNSKSQEADLFSQRENEILHWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 193 MGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 219

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E V G     L          +D  +     
Sbjct: 3   RVLLVDDQALIRGGFRALLEIEDDIEVVAEAVNGEQGVALALEHRPDVALVDIQMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +                +     + A +  G
Sbjct: 63  IEATRLIAA------DERLSGVHVVILTNYGLDEYVFNALRAGACGFMVKDTEPADLLQG 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++       +  +A Y A    S          LT RE E    ++ G ++
Sbjct: 117 VRVAARGDALLSPAITRRL--IAEYVARRPASAPEGLD---VLTNREREVTALVARGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIAV + IS  T   +++  M K   + R+  + +A  + +V
Sbjct: 172 DEIAVHMVISPTTAKTHVSRAMTKLRARDRAQLVVFAYESGLV 214


>gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 217

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 61/222 (27%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L    +       L E   G                +D  +      
Sbjct: 12  LLIVDDHPVVRDGLRGMFASAPGFRVLGEAANGVQALERAAALDPDVILMDLRMPGGGGV 71

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R ++            R   L    + T  + +         Y         +   +
Sbjct: 72  DAIRELSRRG--------ARAKVLVLTTYDTDSDTLPAIEAGATGYLLKDAPREELFTAV 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +           ++          L+ RE E L  ++ G ++ 
Sbjct: 124 RAAADGRTVLSPAVASRL----VCAVRAPRTAGGEP-----LSAREREVLALVARGTSNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 175 EIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGIL 216


>gi|306836360|ref|ZP_07469338.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304567720|gb|EFM43307.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 253

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 71/259 (27%), Gaps = 39/259 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E + + I L  +     +  + L    + ++ +                          L
Sbjct: 7   ESEPIRIALVDDQPLLRAGFAMLIGSQEDMSVVWQASDGDEVLD---------------L 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R +      +D  ++                            +    F          
Sbjct: 52  ARQEPVDIILMDVQMARVNGIAATEE--------VLPEFPETKVIMLTTFDDHNFVHGAI 103

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI----------------GLLAA 167
           +   + +     +   +   +  +     ++      ++                     
Sbjct: 104 SAGASGFLLKDVEPEELLSAIRTVHSGEAVLSPRITAQVLQQVRSEEGGDSRKAHSASHT 163

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A    +         ELT RE++ L  ++ G ++ EI+    +S  TV  ++  ++ K
Sbjct: 164 AAAAQPGATTATAPPSAELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTK 223

Query: 228 TATKTRSGAIAYAVRNNIV 246
           T ++ R  A+ YA  + +V
Sbjct: 224 TGSRDRVQAVLYAYTHGVV 242


>gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 16/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           ++  R   V       + LA ++  +   +   +        G+    L R        +
Sbjct: 2   DEPLRLLVVDDQTLVREALAGLLDAEPEFTVVGQA-----ADGSEVPALARDSDPDIVIM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    +             +   +    F              + +    
Sbjct: 57  DVRMPDVDGVEATARLTRER--------PQSKVILLTTFDVDAYVYAGLRAGASGFLLKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              A +   +  +     ++       +    +  A +         +   LT RE + L
Sbjct: 109 SHAATLIAAVHTVASGNAVLSPWATSRL---VSTFAPLLPEPLATPPRLKALTARERDVL 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    G +++EIA  LGI   TV +++ S+M K   + R  A+  A    ++
Sbjct: 166 SLTGRGLSNNEIATELGIGYETVKSHLRSVMTKLRLRDRVHAVIVAYETGLL 217


>gi|297154023|gb|ADI03735.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 226

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 61/220 (27%), Gaps = 9/220 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           +     +  + E   G     L R        +D  +       
Sbjct: 2   LLADDQALLRGAFRMLLDSADDITVVGEAADGREAVRLTRELRPDVVIMDIRMPEVDGLT 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +           L+    L    + T              +         +   + 
Sbjct: 62  ATSEICA------DPELRASRILILTTYETDEYVAQALRAGAGGFIGKGIGAEDLLDAVR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +  +A + A    +   H  +   LT RE E +  ++ G ++ E
Sbjct: 116 TIADGDTLLSPAATRSL--VARFLATPDDTPSHHPEQLAVLTPREREMVALVATGLSNQE 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  + +S  TV  ++   M K   + R+  +  A R  +
Sbjct: 174 IAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGL 213


>gi|196234582|ref|ZP_03133403.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196221370|gb|EDY15919.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 30/234 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  +V+  +D          P   D L R++     +     + +  E V       + 
Sbjct: 3   EKKTVVIVEDD----------PGLRDQLVRVLKSARDIECLYTLGSAEEAVQK-----IP 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D V  +           L     +   V+            
Sbjct: 48  ARPPDVVLMDIELPGMSGIDCVAVLKKQ--------LPDLEFIMLTVYEDADRIFRALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   +    ++   +  +   G             +A      F+       +  +
Sbjct: 100 GASGYLIKSGPPEKLFEAIRDVHSGGAPFSAH-------IARKVVQYFRGTTKPARETEK 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ RE E +  ++ G    EI   LGI   TV +Y+ +I  K   K R+ A+A 
Sbjct: 153 LSPRECEVIELLASGYIYKEIGDKLGIGAETVRSYVKNICIKLQVKNRTEAVAK 206


>gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family
           [Brucella ovis ATCC 25840]
          Length = 235

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 10  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 69

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R      P+  +                 G+        +    +   L  +
Sbjct: 70  AEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 129

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ ++                     D  LT RE E L W SEG
Sbjct: 130 RSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 189

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 190 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKARTFGLL 235


>gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 216

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA               +D  +      
Sbjct: 8   ILIVEDQTLMRQGLRTILDLEESIRVVGEARDGAEGVREALRLRPDIILMDVQMPVMNGV 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +  +          +   +    F                Y         +   +
Sbjct: 68  EAIRAIIAAWS--------QARIIVLTTFDRDDYVFQSVRAGAMGYLLKDAPAEALLQTI 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTS 203
             +      I  +       +A+       +     G   F+L+ RE E L  +++G ++
Sbjct: 120 RRVHAGEVFIQPE-------IASRTLREAATGRRRAGTIPFDLSEREREVLVLLAQGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L I+  TV N++++I+ K   + R+ A   A R  +
Sbjct: 173 REIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARREGL 214


>gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 213

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 67/220 (30%), Gaps = 17/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA               +D  +      
Sbjct: 7   VLVVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELRPDVVLMDVKMPVLDGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +                 L    F      +         Y     D   +   +
Sbjct: 67  EALRRLRDLGN--------AARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPEALAGAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++  +    +           +      G+   LT RE E L  I++G+++ 
Sbjct: 119 RSVHAGHILLQPEVAGALL--------SQEEAQSGLGRGGSLTEREREVLGLIADGRSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 171 EIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210


>gi|223939687|ref|ZP_03631560.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891644|gb|EEF58132.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 31/233 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ + +  +D+   + ++ L  R+  L  +            +                 
Sbjct: 2   QIKVAIVDDDKDMRTSLATLIRRTGSLQLLGEYSNGEIAMEEIPRQ-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + VR +          ++     L   V+             
Sbjct: 48  -PPDVVLMDINMPGMGGIECVRRLKA--------IIPAVQVLMLTVYEDSDSLFNSLKAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       +++   +  +   G  +       +    +   +             +L
Sbjct: 99  ASGYLLKRTSSSKLLEAVRDVHAGGSPMSPQLARRLVQFFSKPQD--------VSPVSQL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  E E L  +S+G    EIA  +GIS +TV  Y+ ++  K    +R+ A+  
Sbjct: 151 SPGEREFLQLLSKGYVYKEIAEKMGISTDTVRYYVRTVYEKLHVHSRTEAVVK 203


>gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771]
          Length = 253

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 19/234 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLV 87
            L +             + A                     F+  K D  V  ++P +  
Sbjct: 18  FLDQADSAAQPDQLFDLLAAFALNFDIPWVAYGPLAADRWAFKRVKYDPQVVLNYPDEWQ 77

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLT 134
           +  +    D+   V++   +       +                +     G+ +      
Sbjct: 78  KRCSEMAYDRVGPVVKESRKQRRAFQWSEVYNDVYTTEGERRIFDEAAAFGLRSGITVPL 137

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVE 192
                                   +  + L A +  +    +       +   L+GRE E
Sbjct: 138 HGPDGSFAITSFAQHSSGQFQNRAISYLQLAALHFHSRVGKFADSNCIDEGAVLSGRERE 197

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           C+ W++ GK+S +I  ILGIS+NTV+ +I ++MRK  T +R+ A   A    I+
Sbjct: 198 CIAWVARGKSSSDIGTILGISKNTVDFHIKNVMRKLDTASRTVAAITAATLGII 251


>gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 198

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 24/192 (12%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------------T 121
           ++  WP   ++  A  +  +   +++       P                          
Sbjct: 7   LAGRWPERWLQIYAAKKYIRIDPMVRYLAHAQRPFRWRESMAAFNGSTHRRRMEQMMVDA 66

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY----- 176
              G+++ Y         I   L L   K   +    +  +  +A               
Sbjct: 67  FGHGLEDGYLFPIHGRNGILGSLSL-GGKPIELSPVEIALLEAVARKTFWRLLELTGEAE 125

Query: 177 --DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +     +  LT RE+E L +++EG TS EI+ +L IS +TV+ Y+  +  K   K R 
Sbjct: 126 ALETVLPAETPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQ 185

Query: 235 GAIAYAVRNNIV 246
            A+A A R+ ++
Sbjct: 186 QAVALAFRHGLI 197


>gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 70/220 (31%), Gaps = 25/220 (11%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D +   + L    +    M  + +   G       R    +   LD  +      + 
Sbjct: 2   LVDDHVVLRMGLATAANCEPDMEVVGQAENGEDAIPECRKCQPEVVVLDMRMPKLGGIET 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ +           ++         + +  E           +      +  +  G+  
Sbjct: 62  IKLLKKEF-----PSIKILVFSN---YASGEEATQAYRAGAAGFVVKDMPLDNLIQGIRS 113

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    + +  +    +                      +LT RE+E L  +++G+++ EI
Sbjct: 114 VHNDEQYVPPEIANRL----------------SSQVLSQLTKRELEVLAQVAKGRSNKEI 157

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +   TV  ++ +I+ K     R+ AI  AV+  ++
Sbjct: 158 ANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRGLI 197


>gi|110636531|ref|YP_676738.1| two component LuxR family transcriptional regulator [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279212|gb|ABG57398.1| two component transcriptional regulator, LuxR family [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 215

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 68/242 (28%), Gaps = 28/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +++++I++  +       +  L    D    +            +  L            
Sbjct: 2   MKKISIIIADDHTLIRDGIKSLLQSVDEFEVVGEATDGDELIQFIDTL------------ 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +      +++  +             R   +   +       +    
Sbjct: 50  ---DPEIVVLDITMPKKSGIEVITEVKKYNN--------RVKFIVLSMHDNPEYVLKSVQ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   I   +  +    +    D      +L                   
Sbjct: 99  SGALSYLLKNTDHEEIIKAVKAVSAGQKYFSPDI--YSIILNGLANPELVKASQIAE--- 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  +S G ++  IA  L IS  TV  +  ++M+K      +  I  A+  N
Sbjct: 154 TLTKRELEVLKEVSMGLSTKLIADKLFISVRTVETHRINLMKKLDVHNSAELIKKAMDLN 213

Query: 245 IV 246
           I+
Sbjct: 214 II 215


>gi|294816579|ref|ZP_06775221.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|294321394|gb|EFG03529.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 223

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 61/224 (27%), Gaps = 12/224 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D L     L   +     +  + E   GA    L +        +D  +       
Sbjct: 2   LIADDQLLVRRGLVLMLGPEPSVEVVGEAADGAQAVELAQRLRPDVIIMDIRMPVLDGIA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +           +     L    F      +         +         +   L 
Sbjct: 62  ATEQLTRQ--------VPDCRVLALSTFDMDEHVVAALRAGACGFLPKDISPEELVTALH 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKT 202
           ++     ++    L  +            +     G       LT RE E    I+ G  
Sbjct: 114 VVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTGPTGVPDGLTPREREVWRLIAAGLD 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IA  + +S +TV N+I ++  K   + R+ A+  A    +V
Sbjct: 174 NTGIAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIAAYEAGLV 217


>gi|284990521|ref|YP_003409075.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063766|gb|ADB74704.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 232

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 15/229 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         V+    +  + E   GA               +D  +     
Sbjct: 4   RVLLADDQVLIRSGFAALVNSADDLKVVGEAGDGAEAVRQAGALRPDVVLMDIRMPGVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A          L     +    F      +       + +   + +   +   
Sbjct: 64  LTAARQIAA------SPDLSEVRIIVLTTFEADEYVVEALRSGASGFLGKSVEPDELLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWI 197
           + ++     ++       +  +A + A   +S     G          LT RE E +  +
Sbjct: 118 IRVVARGDALLSPRATRSL--IARFLAQPGRSGPDPDGPAPVDAALDVLTEREREMVALV 175

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++++IA  L +S  TV  ++   M K   + R+  +  A +  +V
Sbjct: 176 AHGLSNEDIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVVLAYQTGLV 224


>gi|325695228|gb|EGD37129.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 210

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G         D      +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQEDIAEVSEAVNGKEGVEQALADRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|307324486|ref|ZP_07603693.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889730|gb|EFN20709.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 215

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 62/240 (25%), Gaps = 36/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  +       +S +   ++ +  +                    G    +    
Sbjct: 11  PIRVLLADDHPVVREGLSAMLESAEGITVVGQAGS---------------GEEAVVQAVA 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +    +           +     +    +    + +      
Sbjct: 56  LRPDITLLDLRMGGMDGVEATGQILRQ--------VPGCKVVIVTTYEDDSDILRAVEAG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +        ++      ++             +     +   L
Sbjct: 108 AAGYLLKGSSRQELIDAVQTAARGETVLTPSLAGKL-------------FRSRTVEPSPL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GRE E L  +  G T+ EI   L +S  TV  ++    RK     R+ A+  A+    +
Sbjct: 155 SGREREVLRLVGRGLTNSEIGTELFVSEATVKTHLLRSYRKLGVSDRTAAVMKAMERGFL 214


>gi|297195878|ref|ZP_06913276.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152976|gb|EFH32075.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 221

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         +     +    E   G     LV         +D  +     
Sbjct: 3   RVVLADDQMLVRAGFRALLDAQPDIGVAGEASDGEEAVRLVGELRPDVVLMDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     +    F              + +     +   +   
Sbjct: 63  LAATRRITG------DERLADVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +               ELT RE E +  +  G ++
Sbjct: 117 VRAVVEGDALLSPGVTRRL----IAEFAARSKGPAEAQGLGELTEREREVMALVGIGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 173 EEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
 gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15]
          Length = 196

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 17/209 (8%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   +S    +  + E   G     L          +D ++      +  R +      
Sbjct: 2   GVSAYLSTQPDIEVVGEAENGRKGSELALQLRPDIILMDLVMDEMDGVEATRAIIQEW-- 59

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F    +           Y   T   + I   +   +    ++  
Sbjct: 60  ------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYDGETVLEP 113

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++        +  +        D +LT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 114 KVTGKM-------MSRMRQKKEQPLHD-DLTEREFEILLLIAEGKSNQEIADELFIALKT 165

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 166 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 194


>gi|171778156|ref|ZP_02919413.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283138|gb|EDT48562.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 214

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 36/242 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLV 64
           Q++ ++L  + E                   + L    +    +  + E   G     L 
Sbjct: 3   QKIRVILVDDHEMVR----------------LGLKSFFNLQPDVEVVGEAGNGIEGIKLA 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 47  LELKPDVVVMDLVMPEMSGVEATLKLLKEW--------KEAKILVLTSYLDNEKIYPVIE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D       
Sbjct: 99  AGAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------VDKKIKAHDQKPELHE 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +++
Sbjct: 148 DLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104]
 gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104]
          Length = 218

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     ++ ++L  + +   S +  +  R D    +            + A         
Sbjct: 1   MTDPAPEITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAA--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D +V       +    A         VL          F+      
Sbjct: 52  -----------HRPDVVVMDLRMRRVDGIEATRRLGGRPPVL------ALTTFNEDELLS 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +         +   +  +      +       +            +   H 
Sbjct: 95  GALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTY-----RKAAPGPHG 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE + LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI YA
Sbjct: 150 AAIAELTTRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYA 209

Query: 241 VRNNIV 246
             N IV
Sbjct: 210 YDNGIV 215


>gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 465

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 20/241 (8%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVR 65
            +++    + E R S    L            L   +     ++ + E   G        
Sbjct: 241 PISVSAPSQPEARLS----LLIVDAQPVVRAGLHHLLESYADLWVVGEAGDGVQAVSETL 296

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   LD+ +      + +R +     +           L                 
Sbjct: 297 ELGPQVVLLDAQLPEGQSLEALRQIKQLNLN--------TRVLMLSTQEREDYLYETLRA 348

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y         +   L ++     ++          LA    +          +   
Sbjct: 349 GADGYLLKDVSSEELAEALRVVARGEVLVQP-------QLAGRLLSRVGRERERGARSEV 401

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G  + EIA  L +S  TVN ++A+I +K     R+ A++ A+   +
Sbjct: 402 LTTRELEVLRLLVRGLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGL 461

Query: 246 V 246
           V
Sbjct: 462 V 462


>gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 31758]
          Length = 209

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +                G+          
Sbjct: 6   TILIVDDHPLMRRGIKQLLGLDSRFDVVAEANN---------------GSDAITEAGKFQ 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +  +  D           +   V     +         +
Sbjct: 51  PDVILLDLNMKGMSGLDTLKALRHNGSD--------ARIIILTVSDARSDVYAMIDAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +   + +               S         ELT 
Sbjct: 103 GYLLKDCEPEILLENIRQAARGENVFSDEVI-----------QYLSSRHEQVNPFSELTE 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 152 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 206


>gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10]
 gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10]
 gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis]
 gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Antiqua]
 gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CO92]
 gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides F]
 gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           CA88-4125]
 gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Nepal516]
 gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Pestoides A]
 gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D106004]
 gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           D182038]
 gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           Z176003]
 gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 245

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 30/233 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D V+    +       V
Sbjct: 12  NEDIKNYIQRRIKAYGNIRYSYLLMNK--KVPLHPAIISNYPLDWVKKYKKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +        P                   N+     + N Y  +  D       L +   
Sbjct: 70  ILTAKGKVAPFAWDDNSVINIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNVSSG 129

Query: 150 KGRIILRDRLWE-----IGLLAAYQANMFK-----------SYDVHWGKDFELTGREVEC 193
               I  D   E     I +L  +  +              + +    K    + RE E 
Sbjct: 130 DDDSIFFDESIEVNKEKIQMLLIFIHDKMLGLYNKSHHENNTLNKKENKREIFSPRENEI 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W S GKT  EIA+ILGI ++TV  +I +I+RK        AI   +   ++
Sbjct: 190 LYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242


>gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 262

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 82/260 (31%), Gaps = 18/260 (6%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLA--RMIPLDCTVSWTMRMYALTEYVGASHFL 62
           ++ ++   + E + R S VS            R+       S           +G  H++
Sbjct: 1   MKHISRRRSNEGQHRPSLVSDRVQTGAPAPLMRLACATDIPSLVESFGHAAGKLGFPHYV 60

Query: 63  LVRWDLFQEQKLDSIVSSD----WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-- 116
           + R    +               +P + VR     +      V +       P       
Sbjct: 61  ISRVTRSRSTCARRTALEMIGARYPQEWVRHYQHRDYASTDPVHRAAFLQSAPYRWHDII 120

Query: 117 --------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                     +    AG+               +   L  P   +          L++A 
Sbjct: 121 GLSKAERRLLDEAREAGLPAGLSVPLHQSDGSILLFNLSGPLHSVNDAINSRLAYLISAQ 180

Query: 169 QANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                        +     LT R++ECLTW++ GKTS EI  ILG S  TV+ +I   M 
Sbjct: 181 FHFELHRLASMPSRRAAHLLTARQLECLTWVARGKTSAEIGEILGRSHYTVDYHIKEAME 240

Query: 227 KTATKTRSGAIAYAVRNNIV 246
               ++R+ A  +A  + I+
Sbjct: 241 ALNIRSRTAAAVHATVHGII 260


>gi|21902157|gb|AAM78432.1|AF425991_3 putative two-component response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 217

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 10/221 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           V+    M  + E   G     L R        +D  +      +
Sbjct: 2   LLADDQNLVRAAFALLVASAPDMEVVGEAGTGRQAVELARARRADLVVMDVRMPDLDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +A          L     L    + T    +       + +       A +   + 
Sbjct: 62  ATRLIAA------DEDLAGVRVLVLTTYDTDENIVEALRAGASGFLVKDTRPAELLEAIR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +        +              L+ RE + LT ++ G  + E
Sbjct: 116 TVTAGDALLSPGPTARLIERFLRSPSALHPPGSGPD---CLSERERQVLTLVARGLNNTE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+S  T   +++ IM K   + R+  +  A  + +V
Sbjct: 173 IAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGLV 213


>gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 230

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 70/240 (29%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  + E   S +  +  R D    +            +                 
Sbjct: 5   EIRVLLVDDQELVRSGLRRILRRKDGFVIVGECADGSEVPDAVAE--------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +          V   P  L    F             
Sbjct: 50  HTPDVVLMDLRMKRVDGIEATRALRS--------VAAPPPVLVLTTFDDDDLLSGSLRAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         +   +  +   G  +       +       A    S D    +  EL
Sbjct: 102 AAGFILKDSPAEDLIRAVRTVAEGGACLDPAVTGRVLATYRTVA---PSTDGERNRLTEL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L  I  G ++ EI   LGIS  TV +++  I  K   + R+ AI YA  + IV
Sbjct: 159 TARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218


>gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 237

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 18/235 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLAR--MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           R  E++ +++  L      L R  +  +     +   +    +  G     L        
Sbjct: 14  RSSEEKGTYIRILVADDQRLFRECIAGMLAQERFFSVVGQAGD--GIEALELAETYKPDV 71

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      + +R +                 +    +      +   +   + Y 
Sbjct: 72  LLMDVQMPRMDGIEALRRIKEEWPQI--------RVILLSAYTVDERVLEGLSAGASGYL 123

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  ++   ++I       +  L        +           LT RE+
Sbjct: 124 LKDSSAEGVVAAIRAVYAGEQVITSRISRRMMQLYEQGLVEKEPIGE------GLTSREI 177

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I+ G    EIA  + ++  TV N+I++I RK     RS  + YA++  ++
Sbjct: 178 EVLLRIARGMVPKEIAQAIAVTEKTVRNHISNIYRKLNIYDRSQIVIYAIKKGLI 232


>gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 60/228 (26%), Gaps = 18/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + +  ++ L   +             G     LV         +D  
Sbjct: 6   ARVVVADDQAVVREGIVMLLGLLPGIEVVGSARD-----GEEALTLVAELAPDVVLMDLR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 +    +                Y +   D 
Sbjct: 61  MPRVDGVEATRRIRSEHPGTQ--------VVVLTTYADDDSLFPALRAGARGYLTKDADG 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +      +       +                       LT RE E LT I
Sbjct: 113 DEIVRAIQDVVAGRAGLSPVVQRRL---LEQVTAEPPPTGPRLPD--GLTAREGEVLTLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG  + +IA  LGIS  TV  +I ++  K     R+ A+ YA R  +
Sbjct: 168 AEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYREGL 215


>gi|84495477|ref|ZP_00994596.1| putative two-component response regulator [Janibacter sp. HTCC2649]
 gi|84384970|gb|EAQ00850.1| putative two-component response regulator [Janibacter sp. HTCC2649]
          Length = 234

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 20/231 (8%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           +S    +  + +   G                +D  +      +
Sbjct: 2   LIVDDQHLVRSGFTMMLSVEDDIEVVGDVQNGQLALTAAHELAPDVILMDVQMPVMDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +  ++             +    F              + +     D  ++   + 
Sbjct: 62  ATRAIVAADL---------GRVVMLTTFDRDDYLFDALRAGASGFLLKNSDPEQLVDAIR 112

Query: 146 LLFPKGRIILRDRLWEI----------GLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +     ++  +    +             A        +      +   LT RE+E L 
Sbjct: 113 SVAGGHALLAPEVTTRVIAAMVGTGAGAAAATATPGTGSTSPGSADQISRLTDRELEVLI 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G+++ EIA  L +   T+  ++++ + K   + R  A+ +A    ++
Sbjct: 173 LMGRGRSNAEIAADLFLGEATIKTHVSNCLAKLHLRDRVQAVVFAYEVGLI 223


>gi|312200594|ref|YP_004020655.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231930|gb|ADP84785.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +  L    + L  +   +                G +   LVR  
Sbjct: 2   IRVVVADDQPLIRLGLRVLVETEEDLELVGEAED---------------GRTAVELVRRT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +R +           L     +    F           G  
Sbjct: 47  RPDVVLLDIRMPVLDGLAALREITA------DPALHGTRVVMVTTFELDEYVFEALRGGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     + A +   + ++     ++       +    A      +           LT
Sbjct: 101 SGFVLKDSEPADLLRAIRVVAAGESLLSPAVTRRVIEAFAR-----RPVGPGAPDLDGLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G ++DEIA  L IS  T   +++ +M K   + R+     A +  +V
Sbjct: 156 DREREVMGLVGHGLSNDEIAARLVISPATARTHVSRVMVKLGARDRAQLAVLANQAGLV 214


>gi|284032185|ref|YP_003382116.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811478|gb|ADB33317.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 222

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 62/223 (27%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         V+    +  + +   G +   L          +D  +     
Sbjct: 4   RVLVADDQVVVRAGFAAIVNAEPDLTVVGQAGDGTTAVSLAGELDPDVVLMDIRMPGLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +             RP  L    F              + +         +   
Sbjct: 64  LSATRLITGRG--------DRPRVLVLTTFDLDAYVYEALRSGASGFLLKDARPEDLLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +     +                 LT RE E L  ++ G+++
Sbjct: 116 IRVIAAGDGMLAPTVTRRL----IHAFAQAAPTPGTSQTLDRLTPREREVLALLAAGRSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   LG++  TV  ++ +++ K   + R  A   A    +V
Sbjct: 172 AEIGDELGVATGTVKTHVNALLSKLDARDRVQATIIAYDTGLV 214


>gi|269955047|ref|YP_003324836.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303728|gb|ACZ29278.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 230

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 72/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   S +  +    D +  +       +    +  L               
Sbjct: 2   ITVVLADDHELVRSGLRLILEAQDDIQVLSEAADGEAALREVRRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +                 +    F              
Sbjct: 47  RPDVALLDIQMPRMSGLEVARAVVAD-------TTAHTRVVMLTTFDRDDYLYDALVAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +   A +   +        ++       + + +  +            +   L+
Sbjct: 100 SGFMLKSSPRAHLLHAVRTAASGEALLDPSLTRRL-VESHVRRPRAVEPGQTPAQLAGLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G+++ EIA  L ++  TV  ++A+++RK   + R+ A+       +V
Sbjct: 159 PRERDVLQALARGESNAEIAGTLFLAETTVKTHVAAVLRKLGLRDRTQAVILGYEIGLV 217


>gi|222153503|ref|YP_002562680.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222114316|emb|CAR42990.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 213

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  + E     +         +  +                    G     L 
Sbjct: 1   MDKIKVILVDDHEMVRLGLKSFLNMQKDVEVIAEASN---------------GRQGIELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +                 L    +    +      
Sbjct: 46  LELKPDVLVMDLVMPELGGVEATLEILKEW--------PEAKILVLTSYLDNEKIYPVID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D       
Sbjct: 98  AGAKGYMLKTSSAAEILNAIQKVAKGQLAIETE-----------VDKKIKAHDRKPNLHD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 223

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 29/247 (11%)

Query: 1   MN-FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           MN F   ++ ++L  +D      +  L    D +  +            +  L       
Sbjct: 1   MNEFLTSEIQLLLVDDDPLVRRSLRMLFELHD-INVVGEASNGEEALKAIARL------- 52

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                         +D  +        ++ +  +     Y  +Q    +   V +   + 
Sbjct: 53  --------KPTMILMDVNMPKMDGIQALKAIKTN-----YPDIQ---VIILTVHNQHEKV 96

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +       + Y        ++   +  +      +      E+  L        +     
Sbjct: 97  VQAIRDGCSAYVLKDSPPEQLIEVVESVAEGRYFVDTSIANEL--LVNLVQGTPRRQHPK 154

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE E L  I  G ++ EIA  L I+  TV  +++SI+ K     R+ A   
Sbjct: 155 NLPL--LTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHVSSILMKLNVNDRTQAAVL 212

Query: 240 AVRNNIV 246
           A++ N+V
Sbjct: 213 AIQENLV 219


>gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 218

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 67/239 (28%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E   S +  +  R D    +            +                  
Sbjct: 6   IAVLLVDDQELVRSGLRRILRRKDGFVIVGECSDGSEVPASVAE---------------H 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +              L    F              
Sbjct: 51  KPDLVLMDLRMKQVDGIEATRLLRAASGPP---------VLVLTTFDDDELLSGALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +      +       +  LAAY+            K   LT
Sbjct: 102 AGFILKDSPAEDLIWAVRAVAGGDGFLDPAVTARV--LAAYRTAPSARQKQASDK---LT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G  + EIA  L IS  TV ++I  I  K   + R+ AI YA    +V
Sbjct: 157 ARELEVLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQGVV 215


>gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 72/232 (31%), Gaps = 13/232 (5%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +++ R   V       + L  M+ +         +    +  GA    +V         +
Sbjct: 5   QNDIRIVVVDDHLVVREGLHMMLEIAREG--FTWLGDAAD--GAEAVRVVEALQPDVVLM 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      + +  +                 +    +      +         Y    
Sbjct: 61  DLRMPGMDGLEAITQIREQW--------PHIAVIILTTYDEDDLMLRGLRAGACGYLLKD 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   +   +         +  + +  I +                  + ELT RE + L
Sbjct: 113 TDRETLFHAIRTASRGDIFLQPEVMARILVRTTDAF-HPTPSRSQAEGESELTERERDVL 171

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ A+A  ++  ++
Sbjct: 172 EAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKRGLL 223


>gi|302545854|ref|ZP_07298196.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463472|gb|EFL26565.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G    +L++  L     +D  +     
Sbjct: 3   RVLLVDDQPLIRSGFRALLDLECDIEVVAEAADGEEGLVLIKEHLPDVALIDIQMPLMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +                +         +   
Sbjct: 63  IEATRRLAA------DPALAGVRVVMLTNYGMDEYVFDALRAGAAGFLVKDIVPEDLLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++      ++  +  Y      +         ELT RE E +   + G ++
Sbjct: 117 VRVAARGDALLAPSITRKL--IHRYVTQPLPTTGAALE---ELTSREREAVALAARGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  + IS  T   +I   M K   + R+  + +A  + +V
Sbjct: 172 SQIADHMVISPMTAKTHINRAMTKLHARDRAQLVVFAYESGLV 214


>gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
 gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44]
          Length = 196

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 17/209 (8%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   +S    +  + E   G     L          +D ++      +  R +      
Sbjct: 2   GVSAYLSTQPDIEVVGEAENGRKGSELALELRPDIILMDLVMDEMDGVEATRAIIQEW-- 59

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F    +           Y   T   + I   +   +    ++  
Sbjct: 60  ------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYDGETVLEP 113

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++        +  +        + +LT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 114 KVTGKM-------MSRMRQKKEQPLYE-DLTEREFEILMLIAEGKSNQEIADELFIALKT 165

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 166 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 194


>gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 67/228 (29%), Gaps = 15/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
               V  +    D       L   +     +    E   GA               LD +
Sbjct: 3   VRPEVIRVLIADDHRMVRQGLRTFLELQEGIEVAGEAADGAECAERAAELEPDVILLDLV 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +  +  +              L    F      I         Y     D 
Sbjct: 63  MPGVDGVGAMELLREAGST--------ARVLVVTSFTDRRMIIPAIRAGARGYVYKDVDP 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +     ++  +    +        +          +   LT RE E L  I
Sbjct: 115 AALAAAVRSVHAGHVLLEPEVATAL------LDSGSNGAADQGPQAPALTAREREVLVLI 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G+ + EIA  L ++  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 169 AQGRANREIARALVLAEKTVKTHVSNILMKLGVADRTQAALWAVRHGI 216


>gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes
           266]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     M  + E   GA    LV         +D  +     
Sbjct: 6   RLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  S              L    F       +      + +         +   
Sbjct: 66  LGATEKIMTSH--------PEAKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +     +          L+ RE E LT + EG T+
Sbjct: 118 IRAVRDGDSVVAPSATRRLIERFIPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  I+ K   + R   +  A    +V
Sbjct: 178 AEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV 220


>gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH
           1]
 gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica
           WH47]
          Length = 210

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 17/224 (7%)

Query: 24  SHLPTRSDL-LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
             L    D  ++R+  L       + + A  +   A    +V         LD  +    
Sbjct: 3   KRLLIVDDHEVSRLGTLAALEGTGIEVVAQADKA-ADALEIVSNTPLDTVLLDIRMEGGD 61

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + +  + L         L          +          A     Y   T  V+R+  
Sbjct: 62  GLNTLGRIKLDH-----PDLPILLFSG---YDNPTYVARAVALGACGYILKTAPVSRLIE 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L L F   +   R+ L               +  ++   D  LT RE E L  ++ G T
Sbjct: 114 ALNLAFDGQQSWTREELRR-------VTGALATPRMNQDIDVPLTQRESEVLRQMALGLT 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA +LGIS  TV  ++  I+RK     R+ A  +AVR N+V
Sbjct: 167 NKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVRKNLV 210


>gi|298242114|ref|ZP_06965921.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555168|gb|EFH89032.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 67/240 (27%), Gaps = 28/240 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +V+  +       V  +  R   +  +           +  +L             
Sbjct: 8   DPIRLVIADDHAFYREGVRTMLLRLPDMEVIGEAADGDETIAKAESL------------- 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +           +Q         F            
Sbjct: 55  --QPDVILMDIKMPGTNGIEATRRI-----LHTSPHIQVLVVTM---FEDDDSVFAAMRA 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     D   +   +  +     I        +     Y + + ++       D  
Sbjct: 105 GARGYLLKDADRDELVRAIKAVSQGEAIFSPAIAQRMI---RYFSALPRTASAIAFPD-- 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I++G+++  IA    +S  TV N++++I  K     R+ AI  A    +
Sbjct: 160 LTERERQILHLIAQGESNTAIAKRFTLSLKTVQNHVSNIFSKLQVADRAQAIVRARDAGL 219


>gi|284042733|ref|YP_003393073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946954|gb|ADB49698.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA    L R        +D  +     
Sbjct: 4   RVLIADDQALVRSGLRTILEDEPDLEVVGEAEDGAHAVELARRREADVVLMDIRMPRMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V      L    F                +         +   
Sbjct: 64  LEATRLLA--GPGVADPVD----VLVLTTFDLDDYVFGALRAGAAGFLLKDAPPQVLIDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I  +    +      +            +  EL+ RE E L  I+ G+++
Sbjct: 118 IRSVGAGHGLIAPEVTRRL----IARFAEVSPAAERATELEELSPREHEVLLQIARGRSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +  +T+ ++++ ++ K    +R  A+  A    +V
Sbjct: 174 AEIAAALVVEESTIKSHVSRLLSKLGCSSRVQAVILAYEVGLV 216


>gi|270308020|ref|YP_003330078.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270153912|gb|ACZ61750.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  +          L  R   +  +                    G     +  
Sbjct: 5   QMIKVLLADDHVIVREGTRELIQRESGMMVVGEASD---------------GVEAVEMSM 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  + +           L     L    + +    +     
Sbjct: 50  KVHPDVVVMDIAMPRLNGIEATKQIKQL--------LPTTAILILTAYESEQYILAILEA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +        ++   +  ++    ++       +      +A   +           
Sbjct: 102 GAAGFLLKNVKGTQLLEAIRAVYAGESVLQPSTTRRVIDQLINKATKTEEVSAVNP---- 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L   + G ++ +IA  L +S  T+  ++++I +K +  +R+ AI Y ++   
Sbjct: 158 LTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNICKKLSVGSRTEAILYGLKRGW 217


>gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 235

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +       G +H   V         +  +     P +        + 
Sbjct: 10  MQSADDAGQLLEYIGTYARQCGFAHTAYVMRVPLLNGVVKWLSFGSLPQEWTDHYTARKY 69

Query: 96  DKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                ++++      P+  +                 G+        +    +   L  L
Sbjct: 70  ADVDPLVRKALNSIEPLVWSSKLFAEAPQIWADAQRFGIKVGISQPCWAAQGVFGMLSFL 129

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ + A         +          +  LT RE E L W SEG
Sbjct: 130 RTGPALSSGEISMLRRQMQIAANLLHLSMYEHLDVPTMNCVSEVNLTMREREILRWTSEG 189

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 190 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235


>gi|260584047|ref|ZP_05851795.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
 gi|260158673|gb|EEW93741.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC
           700633]
          Length = 211

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 78/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     VS   +  + +  +   +                G          
Sbjct: 2   IKVLLVDDHEMVRLGVSAYLSVQEDIEVIAQAEN---------------GKIGVEKALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +            +    +    F    +     +   
Sbjct: 47  KPDIILMDLVMPVMDGIEATKEILSKW--------KEAKIIIVTSFIDDEKVYPAISAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   + I   +   +    +  ++   ++              +  +    ELT
Sbjct: 99  KSYLLKTSSASEIAQAIRDTYRGEGVFEKEVSEKL--------EHRHEVEEEFRLFEELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I++GK++ EIA    I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 151 SREKEVLLLIAQGKSNQEIADECFITLKTVKTHVSNILSKLQVEDRTQATIYAFKHHLV 209


>gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 75/245 (30%), Gaps = 30/245 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              + + + L  ++      V     + D    +            +             
Sbjct: 1   MAAESITVWLIEDNATFRRTVMRALDQEDGFHCLGGFGSCEDAFAALSR----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                  Q   LD  +      D +                +   +   VF    +    
Sbjct: 50  ---QPAPQVVLLDVGLPGMSGLDGIARFREQA--------PQARIIVLTVFEDEDKIFRA 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWG 181
                  Y   T  V  I   +      G  +  R     + + A +             
Sbjct: 99  ICAGAAGYLLKTAPVEEIARAIRDALAGGAPMNGRIARRVLDMFARFA-------PTRGD 151

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D+ LT RE + L  + +G+T  EIA  L +S +TV+ ++ +I +K    TR+GA+A A+
Sbjct: 152 GDYGLTTRETQILEAMVKGRTKKEIAAQLDLSFHTVDTHLRNIYQKLEVNTRTGAVAKAL 211

Query: 242 RNNIV 246
           +  +V
Sbjct: 212 KEKLV 216


>gi|291302034|ref|YP_003513312.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571254|gb|ADD44219.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 9/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     +     +     +  + E   G     + R        +D  +      
Sbjct: 4   VLLADDQSLLRLGFRAVLDKQPDLEVVGEAADGERAVAMTRALRPDVVLMDVRMPVMDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  S              L    F              + +       A +  G+
Sbjct: 64  EATRRILASGS--------AARVLVLTTFDLDEYVFAALRAGASGFLVKDATPAELTGGI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++      +       +    A      +       +   LT RE + L  ++ G+++ 
Sbjct: 116 RVVAAGDAAVAPGVTRRLIERFAEHLPATERVPPGDDRLNSLTEREHDVLVQVARGRSNQ 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA ++ +S+ TV  ++  I+ K   + R+  I +A  N +V
Sbjct: 176 EIAELIHVSQATVKVHVGRILAKLGLRDRAQVIVFAYENGVV 217


>gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S    +  + E   G     L R        +D ++     
Sbjct: 4   RVLIADDHAVVRQGLRMILSLDDDIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     +           +         +     +   +R  
Sbjct: 64  ISATAEIRQD--------LPEVEVVALTSALDDTMVMGAVRAGAIGFLLKNAEADELRSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +  D             +             +LT RE E LT ++ GK++
Sbjct: 116 VKGAAAGRIQVSPDAT-----------SRLMGQVRAPSGPEQLTEREAEVLTMLARGKSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I + TV  Y++ I+ K    +R+ A  YAV++ +V
Sbjct: 165 KEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207


>gi|295839793|ref|ZP_06826726.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295827655|gb|EDY44664.2| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 206

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 13/218 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P        ++  +  V+            GA     VR        +D 
Sbjct: 2   AIRVLLVDDQPLLRTGFRMILEAEPDVAVVGEAGD-----GAQALDQVRALQPDVVLMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +  +  ++   V      L    F      +       + +      
Sbjct: 57  RMPRMDGVEATRQI--TGPERDGPV----KVLVLTTFDLDEYVVEALRAGASGFLLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++       +  L  Y  ++    +        LT REVE L  
Sbjct: 111 AHELVQAIRVVASGEAMLAPSVTRRL--LDKYAGHLPSGEEQQPSSLQTLTEREVEVLKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           ++ G ++ EIA  L +S  TV  ++  ++ K   + R 
Sbjct: 169 VARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRV 206


>gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 211

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 37/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +               + +  +            +  + + +           
Sbjct: 3   IKVVLADDHPLTREGFKSYLENRENIKLVGEASDGE---SALNVIKDQL----------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       LVR +   E             L    +      +       
Sbjct: 49  -PDVALIDIRMPGIDGVTLVRQIRQEELKVAC--------LMLTSYDAQQYVLASLRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     +   + ++  +G  + ++    +              +        L+
Sbjct: 100 KGYILKTASPEELLRAIEIVASQGVYLDKEVAAAV--------------EEPGFTPESLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L     G++S EIA  L IS  TV  ++ASI  K   + ++ A+  A++  +V
Sbjct: 146 PREREVLLLAGRGESSKEIASKLYISERTVQTHLASIYDKLGARNKTEALLLALKYGVV 204


>gi|332671033|ref|YP_004454041.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340071|gb|AEE46654.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 237

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 10/235 (4%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R + V             + +D      + + A  +   A   +           +
Sbjct: 6   ASPVRVALVDDQQLVRAGF--RMVIDSQPDLQVVLEA-GDGAQAVQAVARAAGQVDVVLM 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  + +         +  +  D        P  +    F      +       + +    
Sbjct: 63  DVRMPTMDGLTATAHITAAGTD----AAPAPRIIVLTTFDLDEYVLAAIRAGASGFLLKD 118

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF-ELTGREV 191
                +   +  +     +I       +   L+ A   +   +      +   +LT RE 
Sbjct: 119 APPEEMLAAIRTVHHGDAVIAPSSTRRLLEHLITALPPDAPGAAADPARRAVADLTERER 178

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G+++ EI   L ++  TV  ++  I+ K   + R  A+  A    +V
Sbjct: 179 EVLVLMAKGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVTAYETGLV 233


>gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp.
           P08]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 58/223 (26%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     M  + E   GA    LV         +D  +     
Sbjct: 6   RLLLADDQQMVRAGFRLVLDAQPDMCVVGEANDGAEAVQLVDELTPDVVLMDIRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  +              L    F       +      + +         +   
Sbjct: 66  LGATEKIMTNH--------PEAKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +                L+ RE E LT + EG T+
Sbjct: 118 IRAVRDGDSVVAPSATRRLIERFIPRQCEGAPAMTDLKLVETLSDREREVLTCVGEGLTN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  I+ K   + R   +  A    +V
Sbjct: 178 AEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV 220


>gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 213

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 84/242 (34%), Gaps = 39/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q++++++  +       ++ +  R  +                  A     G     + 
Sbjct: 9   VQEISVLIVDDHPMVREGLAGVLLRHKMTV----------------AGLAANGRQAIEIY 52

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +     FD+ R +       +    +           ++   I+   
Sbjct: 53  KEQRPDVVLLDLRLPDQSGFDVARAILE-----FDPEARILVFSSAQGDASIHTAISL-- 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D A +   +  +   G  +  +   ++                 +    
Sbjct: 106 -GVRGYLLKGIDGAALAEQVRHVARGGSCLSPEAAEKL---------------TQYITSK 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E L+ IS+GK++ EIA +L ++ NTV  ++  I+ K     R+ A+  A++  
Sbjct: 150 KLSERELEVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKLQANDRTQAVVIAIQRG 209

Query: 245 IV 246
           ++
Sbjct: 210 LL 211


>gi|295130489|ref|YP_003581152.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|291375667|gb|ADD99521.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313772396|gb|EFS38362.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313809915|gb|EFS47636.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313830246|gb|EFS67960.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834047|gb|EFS71761.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314973252|gb|EFT17348.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975927|gb|EFT20022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984055|gb|EFT28147.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315096164|gb|EFT68140.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327326081|gb|EGE67871.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327446037|gb|EGE92691.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327447984|gb|EGE94638.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328760418|gb|EGF73986.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
          Length = 237

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q        V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQG-----GTVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|309799719|ref|ZP_07693936.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308116675|gb|EFO54134.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 210

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D     + L         +  + E   GA    +          +D ++      
Sbjct: 3   LLLVDDHQMVRLGLKSYFELQDDVEVVGEATNGAEGISMALELRPDVIVMDIVMPEVNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    +    + +         Y   T     +   +
Sbjct: 63  DATLAILKEW--------PEAKILIVTSYLDNEKIMPVLNAGARGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVAVGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205


>gi|296120127|ref|ZP_06838681.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967281|gb|EFG80552.1| DNA-binding response regulator DegU [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 69/253 (27%), Gaps = 42/253 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           VN+ L  +     + V      ++ ++ +         T  +                  
Sbjct: 2   VNVFLVDDHSVFRAGVRAELGNAEDISIVGDAGTVAEATSGI------------------ 43

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              +   D ++      D      L            P  L   V     + I       
Sbjct: 44  --TKTNPDVVLLDVHMPDGGGLAVLKHITNANPGDDGPKFLALSVSDAAEDVIALIRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y +     A +   +  +                 LA +  + F S +          
Sbjct: 102 RGYVTKNIAGAELAEAVARVHSGDAYFSPR-------LAGFVLDAFASGEPAPDPAGGPD 154

Query: 186 -------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT    
Sbjct: 155 SEPEPISDPVVDALTRRELEVLRLLARGYTYREIGQELFISIKTVETHASNILRKTQQSN 214

Query: 233 RSGAIAYAVRNNI 245
           R     +A   ++
Sbjct: 215 RYQLTRWAADRDL 227


>gi|226312583|ref|YP_002772477.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095531|dbj|BAH43973.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 215

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 20/228 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +       + +  ++  D                G    +L    +     +D  +
Sbjct: 5   RVMIIDDNEMAREGIRMILESDPIFEVVAE-----GSSGEEAIILSERWMPDLILMDIQM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    +C+           L     +   V   +             Y        
Sbjct: 60  PGMGGLAATKCLKEK--------LPYVKVVMVTVSDDIVHLFDALKKGAQGYLLKNMKPE 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                L  +      + R+       LA      F        +  +LT RE E L  ++
Sbjct: 112 AWHEYLRAIAVDETPMTRE-------LAFRILKEFAPIGSDVAQPSKLTSREREILGLVA 164

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ +I+  L IS +TV N++ +I++K   + R     YA   + +
Sbjct: 165 KGLSNRDISSKLVISEHTVKNHLKNILQKLHLENRVQLARYAFEQSWM 212


>gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 253

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 71/259 (27%), Gaps = 39/259 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E + + I L  +     +  + L    + ++ +                          L
Sbjct: 7   ESEPIRIALVDDQPLLRAGFAMLIGSQEDMSVVWQASDGDEVLD---------------L 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R +      +D  ++                            +    F          
Sbjct: 52  ARQEPVDIILMDVQMARVNGIAATEE--------VLPEFPDTKVIMLTTFDDHNFVHGAI 103

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI----------------GLLAA 167
           +   + +     +   +   +  +     ++      ++                     
Sbjct: 104 SAGASGFLLKDVEPEELLSAIRTVHSGEAVLSPRITAQVLQQVRSEEGGDSRKAHSASHT 163

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A    +         ELT RE++ L  ++ G ++ EI+    +S  TV  ++  ++ K
Sbjct: 164 AAAAQPGATTATAPPSAELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTK 223

Query: 228 TATKTRSGAIAYAVRNNIV 246
           T ++ R  A+ YA  + +V
Sbjct: 224 TGSRDRVQAVLYAYTHGVV 242


>gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 66/225 (29%), Gaps = 11/225 (4%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V+ L    D       L   +        + E   G                +D  +  
Sbjct: 6   GVTRLLICDDHAMFRQGLRSILETEEGFRVIGEAATGREAVRYALETHPDVILMDIQMPE 65

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                  + +                 +   ++                Y         +
Sbjct: 66  LDGVAATKTILEE--------FPDAKVIILTMYRQDRYVFEAVKAGARGYLLKDAGADDL 117

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +     ++  +    +  L  +     ++ +    +  ELT RE   L  +++G
Sbjct: 118 ISAIRRVDEGETLLRAELAASV--LDEFSRAKSETPEHPEHRLSELTEREATILRLLAQG 175

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ EIAV LG+S  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 176 ASNQEIAVSLGVSEKTVRNRLSEIFSKLRLNNRTQAALYALREGI 220


>gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus MN8]
 gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 200

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 4/174 (2%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           K D ++           +  +   K  +       L   +F                Y  
Sbjct: 29  KPDVLLMDLSMPPGESGLIATS--KIADSFPETKILILTMFDDEEYLFHVLRNGAKGYIL 86

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 ++ + +  ++     +  D      L+  + +N  +           L+ RE+E
Sbjct: 87  KNAPDEQLLLAIRTVYKGETYV--DMKLTTSLVNEFVSNSNQDTANTSDPFKILSKRELE 144

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 145 ILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLL 198


>gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 225

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ I++  +D      +         L  +   +                G       
Sbjct: 15  APRLRILIVEDDPMMQLGLEQSLMAHPQLEIVGQAED---------------GYLGVQAA 59

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         + +           L     +      T  E I   +
Sbjct: 60  LALKPDLVVMDIGLPRIDGIAATQQIKA--------ALPETHVVMLTSHKTETEIIAALS 111

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC     + R+   +         +          +A    +  K          
Sbjct: 112 SGADAYCIKGASIERLLNAIAAAVDGATYLDP-------QIARQVIDHLKPPSAKGNT-A 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE+E L  + EG ++ EIA  L +S NTV  ++  IM K A   R  A   A+R+ 
Sbjct: 164 NLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSG 223

Query: 245 IV 246
           +V
Sbjct: 224 LV 225


>gi|313202129|ref|YP_004040787.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|312441445|gb|ADQ85551.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 28/239 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
                + L  +       V  +         +                    G+   LL 
Sbjct: 21  ASPTKVFLIDDHALFRKGVGQMIEADPAFRVVGEAAS---------------GSEGLLLA 65

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + +R   +           +   +   V     + +    
Sbjct: 66  PPLQPDVVLIDLNMKGLNGIETLRRFKIESS-------LQARFVVLTVSDAEDDLLEALR 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L  +     +I       +         + +        D 
Sbjct: 119 AGADGYLLKDMEPEDLCASLKKVISGMTVIQDSLTEVLKQ------ALLEPRTRKADDDV 172

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE E L  +++G  +  IA  LGIS  TV  +I  ++ K    +R  A  +A R 
Sbjct: 173 ALTDREQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRK 231


>gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 208

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 25/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V       + L  ++  + T+             G +   L   +L     +D  
Sbjct: 2   IRVAIVEDQRIVREGLIAVLEDEATIEIVGEA-----ANGQAALDLYAQELPDVVLMDLQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +  +             +   L    + T              Y       
Sbjct: 57  MPVMDGPTAIGQLCQRW--------PQAKVLVLTTYATDEFIWAALRAGAKGYLLKDASA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +  D   ++               V   +   LT RE+E L  +
Sbjct: 109 DELVSAIQAVARGSTHLAPDIAAKLV------------AGVSNPQPESLTPRELEVLHLL 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G+++ EIA+ L I+  TV  ++ +I+ K     R+ A++ AVR  ++
Sbjct: 157 GRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAVSIAVRQQLI 205


>gi|307545400|ref|YP_003897879.1| response regulator GacA [Halomonas elongata DSM 2581]
 gi|307217424|emb|CBV42694.1| response regulator GacA [Halomonas elongata DSM 2581]
          Length = 251

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     + ++HL      ++ +           +   L               
Sbjct: 38  IRVLVADDHHLVRTSIAHLLNDEPGISVIGEAADGEQAIGQARQL--------------- 82

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           L    F              
Sbjct: 83  KPDVILMDIRMPGIGGLEATRKITRLTSD--------VRILVLTAFIEEAFAQRLLEAGA 134

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + S       +   +  +F   R I  D    + L            D +     +L+
Sbjct: 135 HGFISKGSQHDEMVQAIRSVFGGKRYISPDIAQRLVLF---------RIDSNDNPFDQLS 185

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +   +IA  + +S  TVN Y   I  K    +       A+R  +V
Sbjct: 186 QRELQVAMMIVNCQKVADIADRMFLSPKTVNTYRYRIFEKLDVHSDVELTHLALRYGLV 244


>gi|149909623|ref|ZP_01898276.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36]
 gi|149807327|gb|EDM67280.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36]
          Length = 215

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 31/234 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L T  +    +                    G     L +   
Sbjct: 7   TILVVDDHPLMRKGIVQLLTLEEKFNVIGEASD---------------GVEAITLAKQHE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +   E             +   V     + I       +
Sbjct: 52  PDLVLLDLNMKGMSGLDTLKALRAEELS--------SRVVILTVSDNKQDVIKLINAGAD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L  +    + +    +  +        +     +    K  +LT 
Sbjct: 104 GYLLKDSEPDLLLEQLHDVLSGQQALSESLVGYL--------DCLHEDNNFEEKLAKLTK 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE + L  IS+G ++  +A  L IS  TV  ++ S+++K    +R  A    + 
Sbjct: 156 RENQILLEISKGYSNKHVASNLHISEGTVKVHVKSLLKKLEASSRVEAAVMYLE 209


>gi|150389353|ref|YP_001319402.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949215|gb|ABR47743.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 220

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q++ +++  +       +  +      +  +   +                G       
Sbjct: 1   MQKIKVLIVDDQSLMRDGLKTIIDLEPDMEVLGTCEN---------------GRVAIEKS 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      +  + +                 +    F      I   +
Sbjct: 46  KILNPDVILMDIRMPEVNGVEATKIIKKHA--------PHMKIIILTTFDDDEYIIDALS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     D  ++   +   +    ++      ++            +  V     +
Sbjct: 98  HGASGYLLKDIDGDKLINSIRDAYDGTLLMPGTIAAKLVAKLNQANRSSNNVSVAVNNHY 157

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE+E    + EG  + EIA  L I++ T  NYI+SI  K   + R+ A+ +   
Sbjct: 158 YEKLSEREIEIAKLMLEGLNNKEIASELFITQGTAKNYISSIYSKIGVRDRTNAVLFFRS 217

Query: 243 NN 244
           + 
Sbjct: 218 HG 219


>gi|325282407|ref|YP_004254948.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314216|gb|ADY25331.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 222

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 13/219 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWPFDL 86
            + R++ +D    +   + +L E  G                  +   D I+      +L
Sbjct: 8   HMIRVLLVDDHALFRQGLRSLLESEGMRVIGEAANGREALRFAADTHPDVILMDIQMPEL 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A     +          +   ++                Y     D + +   +  
Sbjct: 68  DGVKATQNILEIDPS---AKVIMITMYRQDRYVFEAVKAGARGYVLKDADSSALLDAIRR 124

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++  D    +      +            K  +L  RE   L  +++G ++ +I
Sbjct: 125 VAAGEALLNPDMAQNVLDDFRDKREELPQ-----EKHNDLNERETMILKLLAQGFSNQDI 179

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A+ L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 180 ALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 218


>gi|254425747|ref|ZP_05039464.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188170|gb|EDX83135.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 212

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 18/221 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +S    +  + E   G     L          +D  +      
Sbjct: 4   LLLADDQAIFRQGLSSLLSLEEDLEIVGEANHGREAITLAATQQPDVILMDIRMPICDGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                 A  E    Y  ++         F                Y   +     +   +
Sbjct: 64  -----YATKEIHTRYPWIRILVFTT---FDDDEYVFQSLQAGALGYLLKSTPSQEVAEAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
             L      +          +A    +   +       D+  + + RE++ L  + +GK 
Sbjct: 116 RNLQRGYSQLGP-------TIAPKVFSHIDTDTEAQKTDYRSQFSERELDILKQLGQGKR 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EIA  L ++  T+ N++ +I  +   + R+ A  +A ++
Sbjct: 169 NREIAANLNLTEGTIKNHLTNIFCQLDVRDRTQAALWAHQH 209


>gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
 gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein
           [Hoeflea phototrophica DFL-43]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 79/235 (33%), Gaps = 23/235 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----------WDLFQE 71
           +S  PT   +   ++ ++      +R+ +  E         V                + 
Sbjct: 1   MSAHPTPDTVQHSVLIVEDRHEIALRLKSAIEKTPELTVCAVADDVDGGLNQLFAHKPRI 60

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      ++++ ++ +       V+         +F      I         Y 
Sbjct: 61  VLVDLGLPDGSGIEVIKAVSEAAWSCEALVV--------SIFGDEGRVIEALRAGARGYV 112

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +  +A I   ++ +   G  I       +  + +  A               LT RE 
Sbjct: 113 LKSGSLATIGKDVLSVIEGGSPISPQIARHLLAMVSSGAAGSSEGAPQID----LTNRET 168

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G    EI   LGIS  TV N+I +I +K    + + AIA A R  ++
Sbjct: 169 EILNAVAKGYKRREIGEKLGISTGTVGNHINNIYQKLNVNSNTEAIARATRMGLL 223


>gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR
 gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi]
          Length = 250

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +  +    D ++ S++P + V     +       V+  
Sbjct: 15  IQNYLNRKLKSYGDLKYAYLIMNKKKPT--DVVIISNYPSEWVEIYRSNNYQHIDPVILT 72

Query: 105 PTELFCPVFHTLPENITP------------PAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P        I+                + N Y  +  D       L  +F + R
Sbjct: 73  AINKISPFSWDDDLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFEENR 132

Query: 153 IILRDRL-----WEIGLLAAYQANMFKSY---------DVHWGKDFELTGREVECLTWIS 198
               + +      ++ +L         S          +    +    + RE E L W S
Sbjct: 133 SGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNIFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 193 MGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|325675879|ref|ZP_08155563.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553850|gb|EGD23528.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 222

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +          L      ++ +       +    +  L               
Sbjct: 5   ITVFIADDQAMVRQGFGALLGAQPDISVIGDAPDGRAAVTEVKRL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +  +  +           L    F              
Sbjct: 50  RPDVVLMDVRMPEMNGLDAAREILAAAME------PPVRVLMLTTFDIDEYVYEALGIGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +            +      +   LT
Sbjct: 104 SGFLLKDAPAEELIRAVRVVAAGEALLAPSVTKRLI---EDVTRRRAAPRRRDRQLETLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G ++ EIA  L ++  TV  ++  ++ K + + R+ A+  A  + +V
Sbjct: 161 PREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGLV 219


>gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production
           enhancerprotein) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 200

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 4/174 (2%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           K D ++           +  +   K  +       L   +F                Y  
Sbjct: 29  KPDVLLMDLSMPPGESGLIATS--KIADSFPETKILILTMFDDEEYLFHVLRNGAKGYIL 86

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 ++ + +  ++     +  D      L+  + +N  +           L+ RE+E
Sbjct: 87  KNAPDEQLLLAIRTVYKGETYV--DMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELE 144

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 145 ILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLL 198


>gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 9/191 (4%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      +         +D  +         R ++                +    F   
Sbjct: 38  GEEALAAMSEHPVDIVLMDVQMPVLDGISGTRQLSKR--------FPGAKVIILTTFDDE 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +   A   + +     +   +   +  +     +I       I    +         
Sbjct: 90  DYVMGGLAAGASGFLLKDAEPETLLDAIRTVASGDAVISPRATNRIVAKLSEAPAETIPL 149

Query: 177 DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                +   ELT RE E L  +  G T+ EIA  L IS  TV  ++  ++ KT ++ R  
Sbjct: 150 STADRRAIQELTEREHEILIAVGRGWTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVH 209

Query: 236 AIAYAVRNNIV 246
           A  +A R  +V
Sbjct: 210 AALFAYRTGLV 220


>gi|269954904|ref|YP_003324693.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303585|gb|ACZ29135.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 220

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 70/244 (28%), Gaps = 28/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E   + ++L  +D +  S    L  R++    +                    GA    
Sbjct: 1   MEQSPIRVLLADDDARLRSVYRKLLDRTEGFVVVAETGD---------------GAEAVR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L R        LD  +      D  R +             +   +    F         
Sbjct: 46  LARERTPDVALLDVQMPGLSGLDAARAILAGG---------QVRVVMLTTFDLDEYVHDA 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +       A +   +  +     ++  +    +           +    H   
Sbjct: 97  LTAGVSGFLLKNATPAEVLAAVRSVHAGHALLAPEVTGRL----IRHLAPPRPDHPHPFV 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ REV+ +  ++ G+++ +IA  L +S  TV  Y+  +  K     R+     A R
Sbjct: 153 GKVLSQREVDVVRLVALGRSNQQIADELVLSLETVRTYLRRMFAKLDVNDRTQLAVLAYR 212

Query: 243 NNIV 246
             ++
Sbjct: 213 AGLL 216


>gi|313890015|ref|ZP_07823651.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121606|gb|EFR44709.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 213

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E     +         +  +                    G     L 
Sbjct: 1   MDNIKVILVDDHEMVRLGLKSFLNMQKDITVVAEASN---------------GRQGVKLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +     +           L    +    +      
Sbjct: 46  LEIQPDVVVMDLVMPELDGVEATLEILQKWSE--------AKILVLTSYLDNEKIYPVIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K+++ H     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVAKGQLAIETE-----------VDKKIKAHNQHPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
 gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus
           JCSC5402]
          Length = 210

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 21/224 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       +   +S       + +    ++   +   L + Q  D I+      
Sbjct: 5   DIILVDDHHIVRQGMKFLLSTEASFNVIAD---FNNGRELLEHLDETQLPDLIIMDLVMP 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L    A       Y  ++         F      +       + Y     +   +   +
Sbjct: 62  ELNGIEATRRIKAKYPDVKVLVLSS---FIDEEHVLGVMDAGADGYEMKDSEPKALINTI 118

Query: 145 MLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
             +    +I   D +   + G+  A+  N              L+ RE+E L  +SEG T
Sbjct: 119 KQIAAGEQIFHPDVMKVRKSGMNLAHLRN-------------PLSKRELEVLKAMSEGLT 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  +++ I  K     R+ A  Y V+  ++
Sbjct: 166 NKEIAEKLFVSEKTVKTHVSHIFAKLEVGDRTQASMYGVKYKLI 209


>gi|329934362|ref|ZP_08284441.1| two-component response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329305958|gb|EGG49813.1| two-component response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 221

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 60/222 (27%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   GA    L R        +D  +     
Sbjct: 4   RVLLADDQTLLRATFRILIDSCSDMEVVDEAADGARAVELTRAHRPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F T            + +         +  G
Sbjct: 64  LAATSEICA------DPALAATRILVLTTFQTDEYVARALRVGASGFLGKDVSAEALLEG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +                  G    LT RE E    ++EGK+ 
Sbjct: 118 IRTVAAGDALLSPAATRALITRFLATPEAEAVTGPDAG---VLTAREREVTELVAEGKSD 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++     K   ++R+  +A A R+ +
Sbjct: 175 AEIAEQLFLSPLTVRTHVQRAKTKLDARSRAQLVAIAYRSGL 216


>gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 253

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +D      ++           +   D        +                 
Sbjct: 39  PVRVLLVDDDAHLRMVIAQEIMNDRRTMVVAQADNLKDARKAIRQ--------------- 83

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    LD  + +D   +L+  M             +   +   V  T  + +      
Sbjct: 84  HEFDVMLLDLKLGADDGLELIEVMKSQR--------PQAEVIVVSVVETEEQVLHAFELG 135

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y             ++ +   G  I       +  L  Y            G    L
Sbjct: 136 ATGYLVKNSWFGNYPQAVLQVVNGGASITPSLARRL--LQRYDKRPATGAVPGSGMSDRL 193

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE E L  ++ G TS EI V L IS  TVN +I +I RK   +TR+ A+ +A     
Sbjct: 194 SSRECEVLRMVASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFAYLRGW 252


>gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 253

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +D      ++           +   D        +                 
Sbjct: 39  PVRVLLVDDDAHLRMVIAQEIMNDRRTMVVAQADNIKDARKAIRQ--------------- 83

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    LD  + +D   +L+  M             +   +   V  T  + +      
Sbjct: 84  HEFDVMLLDLKLGADNGLELIEVMKSHR--------PQAEVIVVSVVETEEQVLHAFELG 135

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y             ++ +   G  I       +  L                    L
Sbjct: 136 ATGYLVKNSWFGNYPQAVLQVVNGGASITPSLARRL--LQRCDKRPASGAVPGSDMSDRL 193

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE E L  ++ G TS EI   L IS  TVN +I +I RK   ++R+ A+ +A     
Sbjct: 194 SSRECEVLRMVASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVRFAYLRGW 252


>gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 218

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 70/246 (28%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     ++ ++L  + +   S +  +  R D    +            + A         
Sbjct: 1   MTDPAPEIAVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAA--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D +V       +    A         VL          F+      
Sbjct: 52  -----------HRPDVVVMDLRMRRVDGIEATRRLGGTPPVL------ALTTFNEDELLS 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +         +   +  +      +       +            +     
Sbjct: 95  AALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTY-----RKAAPGPRG 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE++ LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI YA
Sbjct: 150 AAIAELTTRELDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYA 209

Query: 241 VRNNIV 246
             N IV
Sbjct: 210 YDNGIV 215


>gi|94971954|ref|YP_593994.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554005|gb|ABF43920.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 208

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 61/235 (25%), Gaps = 33/235 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +S L    D    +                    GA    LV+  
Sbjct: 3   ITLALVDDQPLMRFGLSSLFETDDDFEVVGEAGN---------------GADAVRLVQDL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 L    F T    +       
Sbjct: 48  RPDVVLMDVQMPELDGVRATARIRELGLP--------SRVLILTTFDTEGYVLDGIRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +      I               +               L+
Sbjct: 100 SGYLLKDMRPTELFDVVRRVAAGELFIQPSV----------ASKYLHLLTTRQLGAEHLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE + L  ++ G ++  IA  L IS +TV N++ SI+ K   + R+ A   A R
Sbjct: 150 PREEDVLRLLARGLSNKAIARDLAISESTVKNHVKSILAKMQVRNRTEAALNASR 204


>gi|329667775|gb|AEB93723.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 224

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     +  +   ++  +    +         +                 +
Sbjct: 2   IKILIADDQQLIRDSIKIILESNEDFSVTDTVANGKEVLSSIEK---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       +       +             +    F       +      
Sbjct: 47  KPDVILMDVRMPVMDGT-VCTKYVKEKYPNI-------KVIILTTFDDDDFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       A +   +  +   G +I  D   ++  L +  A    +  V+  +  + +
Sbjct: 99  SGYLLKGGSPADLFTAIRTVAQGGAMINPDITEKVFRLFSKMAQSNYTISVNDKETKDFS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E   +  +  G ++ EIA  L +S  TV NYI+ I+ K   + R+    +AV+  
Sbjct: 159 RSEWCVIQQVGLGLSNKEIATKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQTG 215


>gi|319948180|ref|ZP_08022340.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
 gi|319438164|gb|EFV93124.1| putative two-component system response regulator [Dietzia cinnamea
           P4]
          Length = 217

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 10/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     +  + +   GA               +D  +      
Sbjct: 5   VLIADDQAMVRQGFAALLDAQPDIAVIGDAENGAVAVAKADALRPDVVFMDVRMPEMDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  S  D    ++          F              + +         +   +
Sbjct: 65  EAARRILASGLDPAPRII------MLTTFDLDDYVYEALRLGCSGFLLKGAPADELFRAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +      +    +           LT RE E +  I+ G+++ 
Sbjct: 119 RVVAAGEALLAPTVTRRLIRETVLRNRRPRRTARELDS---LTPREREMVEQIATGRSNA 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++  +++K + + R+  + YA  N +V
Sbjct: 176 EIATALFISEETVKTHVRRVLQKLSLRDRAQVVVYAYENGVV 217


>gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 224

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     M  + E   GA    LV         +D  +     
Sbjct: 6   RLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  S              L    F       +      + +         +   
Sbjct: 66  LGATEKIMTSH--------PEAKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +     +          L+ RE E LT + EG T+
Sbjct: 118 IRAVRDGDSVVAPSATRRLIERFVPRQGEGAATITDPKLVETLSDREREVLTCVGEGLTN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +I  I+ K   + R   +  A    +V
Sbjct: 178 AEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV 220


>gi|218782824|ref|YP_002434142.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764208|gb|ACL06674.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 219

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S       + E   G +   + R        LD  +      
Sbjct: 8   ILITEDHALVRKGLKSLISSRSEFQVVGEADNGLAAIEMTRKCKPDLILLDLSMPKMNGL 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +R +           ++        +  +    I       + Y     D   + + +
Sbjct: 68  ATMRQLKKER-----PEVKIL---VITMHASQDYLIPALKEGADGYLLKGDDPQELFMAI 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +  D      L+ +      +           LT RE E    ++EG T+ 
Sbjct: 120 RAIMDGKAYLSSDLSG--QLIHSVINPDTREA---ADPLASLTQREKEVFQLVAEGNTNQ 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA +L IS  TV+ +  ++M+K    +      +A++N I+
Sbjct: 175 QIADLLFISPKTVDKHRTNLMKKLDLHSAREVSNFALKNGII 216


>gi|271964741|ref|YP_003338937.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507916|gb|ACZ86194.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 61/223 (27%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D     +           M    E   G     + R        +D  +     
Sbjct: 4   RLLIADDESLLRMAFRMVFQAEPDMEVAGEAGDGDEAARMARMVRPDVVLMDVRMPGVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +             R   L    F              + +         +   
Sbjct: 64  IEATRRIVRDS--------PRSRVLILTTFDLDEYAFAGLKAGASGFLPKNTRPEELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +       +  L  +   +         +   LT RE E L  ++ G ++
Sbjct: 116 IRSVAAGDAAVSPRITRRL--LEKFAPQLMPGAPERDERLALLTSREHEVLVQVARGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  + ++  TV  + + ++ K   + R+  + +A  + ++
Sbjct: 174 AEVATAMHLAEATVKTHFSRVLLKLGLRDRAQVVVFAYESGLI 216


>gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 245

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 76/259 (29%), Gaps = 32/259 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + L  + +   + +     +S  +  +      V     +               
Sbjct: 1   MDGIRVALVEDHDLTRAGLRVALQQSREVEMVGEAPNGVEGLKLLETTL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R       +       +   L   +       +   A
Sbjct: 50  ----PDVAIVDIGLPGIDGIELTRRFKQFLHESEDPEQGKTKVLMLTMQDNEEAVLAAFA 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL----------LAAYQANMFK 174
              + YC     + ++   L +       I       +            +A        
Sbjct: 106 AGADSYCMKDASLEQLLEALQVTSAGNHWIDPAIARIVLQQIQDRQNQQGIADTAEENKT 165

Query: 175 SYDVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                   +++       LT RE+E L  I +G ++ EIA  L I+  TV  ++ +I+ K
Sbjct: 166 ISIHGVDPEYDQILSADPLTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNK 225

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ A   A+R+ +V
Sbjct: 226 LCADDRTQAAVLALRSGLV 244


>gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 223

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 62/232 (26%), Gaps = 15/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E + R   V   P   D +AR    +            T   G                L
Sbjct: 3   EQQIRVMVVDDHPMWRDAVAR-DLAEAGFDVV-----ATAGDGEQAVRRALAVTPDVLVL 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       + + +                 L         + +         Y   +
Sbjct: 57  DLNLPVKPGVQVCKELVGGR--------PELRVLVLSASGEHADVLEAVKSGATGYLLKS 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVEC 193
                +   +        +        +       A+           K  +LT RE E 
Sbjct: 109 ASTEELIDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAPAAGADEPKAPQLTERETEV 168

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 169 LRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 220


>gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           KIM 10]
 gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10]
 gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Microtus str. 91001]
 gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. UG05-0454]
          Length = 220

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +          A+TE              
Sbjct: 17  TILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSD------AITEAAKFQ--------- 61

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +  +  D           +   V     +         +
Sbjct: 62  PDVILLDLNMKGMSGLDTLKALRHNGSD--------ARIIILTVSDARSDVYAMIDAGAD 113

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +   + +               S         ELT 
Sbjct: 114 GYLLKDCEPEILLENIRQAARGENVFSDEVI-----------QYLSSRHEQVNPFSELTE 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 163 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 217


>gi|332358064|gb|EGJ35897.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 210

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G     L          +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQDDIAEVSEAVNGKEGVELALASRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 26/243 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +       +S + +    L  +   +                GA    L 
Sbjct: 1   MTPIRLLIADDQPLVRRGLSLILSPDPALQVVGEAEN---------------GAHAVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      D  R +A         VL     L    F      +    
Sbjct: 46  RELRPDVVVMDIRMPVLDGVDATRELAR--------VLPDCRVLALSTFDLDEYVVAALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-NMFKSYDVHWGKD 183
                +         +   +  +     ++    L  +  ++ Y       +        
Sbjct: 98  AGACGFLPKDVSPEELGAAIRTVHTGEAVVAPRLLTRL--ISTYVRTPATPAVPRPAPAP 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE E    I+ G  +D IA  L +SR+TV N+I ++  K   + R+ A+  A  +
Sbjct: 156 ADLTPRETEVWRLIATGLDNDAIAAALDLSRSTVKNHITALFAKLDVRDRAQAVIAAYES 215

Query: 244 NIV 246
            +V
Sbjct: 216 GLV 218


>gi|288904712|ref|YP_003429933.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306830715|ref|ZP_07463880.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977633|ref|YP_004287349.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288731437|emb|CBI12989.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304427223|gb|EFM30330.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177561|emb|CBZ47605.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 214

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 34/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q++ ++L  + E     +         +  +                    G     L  
Sbjct: 3   QKIKVILVDDHEMVRLGLKSFLNLQPDVEVVGEAGN---------------GLDGINLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++      +    +            +    L    +    +       
Sbjct: 48  ELKPDVVVMDLVMPEMSGVEATLKLLEEW--------KEAKILVLTSYLDNEKIYPVIEA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T   A I   +  +      I  +                K++D+      +
Sbjct: 100 GAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------VDKKIKAHDMQPELHED 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++++
Sbjct: 149 LTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium
           intracellulare ATCC 13950]
          Length = 218

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 69/246 (28%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     ++ ++L  + +   S +  +  R D    +            +           
Sbjct: 1   MTDPAPEITVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAVAE--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D +V       +    A         VL          F+      
Sbjct: 52  -----------HRPDVVVMDLRMRRVDGIEATRRLGGRPPVL------ALTTFNEDELLS 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +         +   +  +      +       +            +     
Sbjct: 95  GALRAGAAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTSRVLTTY-----RKAAPGPRG 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE++ LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI YA
Sbjct: 150 AAIAELTTRELDVLTLIGQGLSNTEIAGKLCISGVTVKSHIGRIFGKLDLRDRAAAIVYA 209

Query: 241 VRNNIV 246
             N IV
Sbjct: 210 YDNGIV 215


>gi|218283881|ref|ZP_03489767.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989]
 gi|218215544|gb|EEC89082.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989]
          Length = 217

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  + +     +  +         +  +         +                 +
Sbjct: 2   VKIMIADDQQLIRESLKIILDSDPSFEVVKVVGSGQEVLDSLKT---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    D    +   E             +    F              
Sbjct: 47  SVDIILMDVRMPNMSGVD-CTRIVKKEYPNI-------KVIILTTFDDDEYIYDALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +   G     +   ++    +  AN    +     +DF+L+
Sbjct: 99  SGYLLKGCSLEELSSAIHSVLSGGACFNPNVAGKVAQFFSQMANSNSEFSFEHEEDFDLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ EIA  LG S  T+ NY++ I+ K   + R+    + +   
Sbjct: 159 DTECKIIAQIGHGYSNKEIAQKLGFSEGTIRNYLSVILDKLDLRDRTQLAIWYLSRG 215


>gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete
           8FN]
          Length = 210

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 25/222 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVG----------ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           R+I +D        +  + E  G               L+     +   LD  +      
Sbjct: 4   RLIVVDDHPVIRRGLENMLEGSGISIVGEAASAEQALSLLSLISAEVVLLDVRMPDGDGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +  + L         +          F          A     Y +       +   +
Sbjct: 64  DCLSRIKLDH-----PDVAVLMYST---FGNPTYVARAVALGAVGYVTKGKPKELLCDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +  RD L               +  +    +  LT RE E L  ++ GKT+ 
Sbjct: 116 CQVAKGETVWSRDELRR-------VTGALATPRLDLDVEVPLTAREAEVLKHLTSGKTNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  ++ +I+RK     R+ A  +A R  IV
Sbjct: 169 EIANSLTISYETVKEHVQNILRKIGVTDRTQAAVWAFRKGIV 210


>gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 216

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + +   G     L          +D  +     
Sbjct: 5   RILLADDHTVVRKGLRLLLESHPGFQVIGDAADGRDAVSLAGEHTPDVVVMDVAMPGLNG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R ++          L     +F  +       +         Y         +   
Sbjct: 65  IEAARQISAK--------LPHTAIVFLSMHSDESYVLKALKAGARAYLLKDSAEHDLIAA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ +              I  +                    LT RE E L  ++EGK +
Sbjct: 117 VIAVSEGKAFFSPA----ISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A IL +S  TV  +  +I++K    + +  I YA+R  ++
Sbjct: 173 KEVAAILNLSLYTVETHRGNILQKLNLHSGAELILYAIRKGVI 215


>gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 241

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 21/227 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            L ++      V     M +    +    F          +K    + S++P        
Sbjct: 8   FLEQLSESVDAVDLCETMASAAAALDFPLFAYFSCPSASGRKPR--LISNYPPSWTSRYM 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENI-------------TPPAGMDNRYCSLTFDVA 138
                ++  V+ R  + +      +                     G+         D  
Sbjct: 66  QLRYHRHDPVILRGLQGWDTFDWGVDLARQHLPAAQQRILEEAARFGIRCGLTMSMHDHR 125

Query: 139 RIRIGLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                L L   + R  L   L        +  ++ +     +  +        LT RE E
Sbjct: 126 GRFAALTLASDQSRPPLLRSLSRYEQALQLVAISFHIFARRRLAEDCVVDGVILTPREFE 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           CL W ++GK++ +I+ IL +S+ TV  ++ +   K   +T + A+A 
Sbjct: 186 CLKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVAR 232


>gi|302552462|ref|ZP_07304804.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470080|gb|EFL33173.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 12/228 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +     M  + E   G+    L          +D  +   
Sbjct: 1   MTTVLIADDQPLQRFGSRMLLESQDDMTVVGEAANGSEAVRLAAELHPDVVLMDIRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  +          R   L    F              + +         + 
Sbjct: 61  DGIEATRRITAAG--------DRTRILIVTTFDLDEYAYAGLRAGASGFLVKDAQPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWIS 198
            G+  +     ++       +     +     +  ++      +   LT RE E LT I 
Sbjct: 113 SGIRAVATGDAVVAPSLTRRLLDAYVHHLPTDSAAETPPQEDPRLASLTDREREILTVIG 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G T+ EIA    ++ +TV  ++  I+ KT ++ R  A+  A    +V
Sbjct: 173 RGWTNTEIATRFHLAESTVKTHVGRILAKTGSRDRIQAVILAYDTKLV 220


>gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
 gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides F]
          Length = 209

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +          A+TE              
Sbjct: 6   TILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSD------AITEATKFQ--------- 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +  +  D           +   V     +         +
Sbjct: 51  PDVILLDLNMKGMSGLDTLKALRHNGSD--------ARIIILTVSDARSDVYAMIDAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +   + +               S         ELT 
Sbjct: 103 GYLLKDCEPEILLENIRQAARGENVFSDEVI-----------QYLSSRHEQVNPFSELTE 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 152 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 206


>gi|301155137|emb|CBW14601.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Haemophilus parainfluenzae T3T1]
          Length = 219

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 34/243 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N   +++ +++  +       +  L    +    +  +                 G    
Sbjct: 9   NIMQEKLKVLIIDDHPLMRRGIKQLVELEENFEVVADVGS---------------GTEGI 53

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            +   +      LD  +      D ++ +     D           L   V     +  T
Sbjct: 54  SIAIQESPDLIILDLNMKGLSGLDTLKGLRAEGVD--------ARILILTVSDAKNDIFT 105

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y     +   +   +  +     I+                N+         
Sbjct: 106 LIDSGADGYLLKDTEPDVLLEQIKRIAQGEVILSDS-----------IKNLLLERKHTVD 154

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A     
Sbjct: 155 PMDSLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLFF 214

Query: 242 RNN 244
             N
Sbjct: 215 ERN 217


>gi|269797048|ref|YP_003316503.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269099233|gb|ACZ23669.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 7/216 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL----FQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +D        +  +    G                       +V  D     +  +A
Sbjct: 4   VLVVDDQPLVRQAVRDILTDGGVDVVGEASTGHEAVRAAAALAPDVVLMDIRMPGLDGIA 63

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +E+            L    F      +       + +     +   I   +  +    
Sbjct: 64  ATEQICAGPAGSTTRVLVLTTFEEDEYVVAALRAGASGFIGKGAEPDDIVRAVRTVHLGE 123

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTWISEGKTSDEIAVIL 210
            ++         L+  Y        D         LT RE E    ++ G+T+ +IA  L
Sbjct: 124 SLLSSAATR--ALVERYVHQQAPRADAWEGDGLGRLTEREREVFLLVAAGRTNQDIAAEL 181

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS +T   ++  IM K   + R+  +  A  + +V
Sbjct: 182 VISTHTAKTHVNRIMTKVDVRDRAHLVILAYESGLV 217


>gi|307329696|ref|ZP_07608853.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884636|gb|EFN15665.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 231

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L R        +D  +     
Sbjct: 4   RVLLADDQALLRGAFRLLLDSADDITVVGEAADGREAVRLTRQLRPDVVLMDIRMPEVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L+    L    + T              +         +   
Sbjct: 64  LAATTEICA------DPELRASRILILTTYETDEYVAQALRAGAGGFIGKGIGAEDLLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +  +A + A    +   H  +   LT RE E +  ++ G ++
Sbjct: 118 VRTIADGDTLLSPAATRSL--VARFLATPADAPPRHAERLSVLTPREREMVALVATGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  + +S  TV  ++   M K   + R+  +  A R  +
Sbjct: 176 QEIAEQMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGL 217


>gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 70/223 (31%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + +   GA               +D  +     
Sbjct: 4   RVLIADDQAMVRAGFGALLAAQPDIEVVGDAADGAQALAEAAAHQPDVVLMDVRMPVMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +            +RP  L    F              + +       A +   
Sbjct: 64  LEAARRILAGAP-------ERPRILMLTTFDLDDYVYAALRAGASGFLLKDAPAAELVHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +A + A               LT RE++ L  I+ G ++
Sbjct: 117 VRVVAAGDALLAPSVTRRL--IADFAARRPADQSGPVA-VAALTPRELDVLRLIARGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +++ I+ KT  + R+ A+  A  + +V
Sbjct: 174 QEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGLV 216


>gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 206

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +       D +  +      +       +LT              
Sbjct: 2   IRVLIADDHPVVRQGLRTFLEVHDDITVVGEAADGLETIELARSLT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +                 +         E +       
Sbjct: 48  -PDVLLLDLKMPVRDGLDVLAELHGLG----------VRVIVLTSVTGRGEVLPAMRAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     D   +   +  +     ++  +    +                    +  LT
Sbjct: 97  AGFLYKDVDPEALVQAIRAVHEGQVLLAPEAAEAVL---------GGPAAPPGEPEIALT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G+++ EIA  L ++  TV  ++++++ K   + R+ A  YAVR  +V
Sbjct: 148 AREREVLRLIAAGRSNREIARELSVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRRGLV 206


>gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei]
          Length = 246

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 63/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +       G+  +     +     KL  ++ S +P + V     +       V+  
Sbjct: 15  LRDYIDRKLSQFGSPEYAYTVVNKKNPSKL--LIISSYPDEWVNLYIANNLQHIDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFPKG- 151
             +   P        +                 + N Y  +  D       L L+     
Sbjct: 73  AFKRTSPFVWDENITLMSDLKISKIFSLSKKYNIANGYTFVLHDHLNNLALLSLIIDSNM 132

Query: 152 ----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----------FELTGREVECLTWI 197
                         + +L                +D             T RE E L W 
Sbjct: 133 KANLEEQFSSEKGNLQMLLIEINEQMYRLVQSVSEDKDGSEMGVSKATFTAREHEVLYWA 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S G T  EIA I+GIS  TV  ++ +++ K        AI   V   ++
Sbjct: 193 SMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELI 241


>gi|333027751|ref|ZP_08455815.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332747603|gb|EGJ78044.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 216

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 55/213 (25%), Gaps = 9/213 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLVRCMALS 93
           +D    W   +    E  G                    + D +V       L       
Sbjct: 3   VDDHPMWRDAVARDLEAAGFELVATAGDGPQAVRRATATRPDVLVLDLNLPGLPGVEVCK 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                   L               + +         Y   +     +   +        +
Sbjct: 63  RLVGERPELHVL---VLSASGEHADVLEAVKSGATGYLVKSASTEELIEAVRRTAVGDAV 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGI 212
                   +       A   +      G +   LT RE E L  +++G +  +IA  L I
Sbjct: 120 FTPGLAGLVLGEYRRLAAEPEPKTSGGGPETPRLTERETEVLRLVAKGLSYKQIAERLVI 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ + + K     R   + YA+   +
Sbjct: 180 SHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 212


>gi|297158992|gb|ADI08704.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 62/230 (26%), Gaps = 16/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R                ++  D                GA     VR        +D 
Sbjct: 4   PLRVVVADDQALVRTGFTMILAADGIDVVAEAAD------GAEAVEAVRRTRPDVVLMDI 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +      +       P  +    F          +   + +      
Sbjct: 58  RMPDVDGLEATRRILTGAPGE-------PRVIILTTFDLDHFVYAALSAGASGFLLKDVT 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++       +       A               LT RE E L  
Sbjct: 111 PEHLVAAVRMVRSGDALLAPAITRRL---VERYARRDPDTSALHRDLAALTPREAEVLRL 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G ++ E+A  L +S  TV  ++A I+ K   + R  A+  A    +V
Sbjct: 168 LAQGLSNAELAARLHLSEATVKTHVARILAKLGLRDRVQAVVVAYETGLV 217


>gi|254297002|ref|ZP_04964455.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 406e]
 gi|157806917|gb|EDO84087.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 406e]
          Length = 225

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S V  L  R      +                    G       +  
Sbjct: 3   IRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASD---------------GVEGVKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           +     +   V     E  T      
Sbjct: 48  QPDVILLDLNMPGLSGLETLQLLVQD--------VPSAHVVILTVSEDAEELTTALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     D   +  G+        +I      +        A              +LT
Sbjct: 100 CGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPAAALAPAAHASVDPDQLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     YAV   +
Sbjct: 160 PREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERGL 217


>gi|145860182|dbj|BAF57040.1| DNA-binding response regulator [Streptococcus bovis]
          Length = 214

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 36/242 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLV 64
           Q++ ++L  + E                   + L    +    +  + E   G     L 
Sbjct: 3   QKIRVILVDDHEMVR----------------LGLKSFFNLQPDVEVVGEAGNGIEGIKLA 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +            +    L    +    +      
Sbjct: 47  LELKPDVVVMDLVMPEMSGVEATLKLLKEW--------KEAKILVLTSYLDNEKIYPVIE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K++D       
Sbjct: 99  AGAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------VDKKIKAHDKQPELHE 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +++
Sbjct: 148 DLTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHH 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|289645062|ref|ZP_06477093.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289505136|gb|EFD26204.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 216

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +  L    D L  +   +                G     +V+  
Sbjct: 2   IRVVVADDQPLVRLGLRVLIDSEDDLELVGEAED---------------GRKAIAVVQRT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +R +           L +   +    F              
Sbjct: 47  RPDVVLLDIRMPVLDGLSALRAIVE------DPHLDQTRAVMVTTFELDEYVFEALRSGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     + A +   + ++     ++       +           +   VH      LT
Sbjct: 101 SGFVLKDAEPAELLRAIRVVAAGESLLSPTVTRRV------IDAFARRPAVHTPDLSGLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G ++DEIA  L IS  T   +++ +M K   + R+     A +  +V
Sbjct: 155 AREREVMGLVGRGLSNDEIAQRLFISPATARTHVSRVMVKLGARDRAQLAVLANQAGMV 213


>gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 18/234 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ +       V   P   D + R    D   +      ++                   
Sbjct: 1   MSEQQSPTVMVVDDHPIWRDAVVR-DLADDGFNVVATADSVA----------AARRRAAV 49

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            K D ++      D     A +E  +     +              + +         Y 
Sbjct: 50  VKPDVVLMDMRLADGNGVQATTEVLEVSPATRVL---VLSASDEREDVLEAVKAGATGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +   A +   +        +        +  L   +     +          LT RE 
Sbjct: 107 VKSASKAELSDAVRATAAGRAVFTPS----LAGLVLGEYRRIATSTDSGPARPSLTERET 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 163 EVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216


>gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 13/222 (5%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
                    + + A   + G    ++        +    I+   +P   +   +      
Sbjct: 6   TAAEIEDCLLGLAAGFGFTGLFGGIVPTRPAPLAELRSRILFQRFPAQWLDRYSRKGYVF 65

Query: 98  YYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFDVARIRIGL 144
              ++Q       P                 L        G+ + Y      +      L
Sbjct: 66  RDPIIQHLFHERAPFTWHEGYESCPQRRNVRLIRGEAAEFGLRDGYVVPISTIDGEIASL 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
               P    +  D        +                   LT RE +CL W  EGKT+ 
Sbjct: 126 SFGGPGTLPVSADLSVLNFAASYALGRHLHRIATWQRVSSNLTAREWDCLLWAGEGKTNW 185

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + ILGISR+TV  +I +   K    +++ AIA A+R  ++
Sbjct: 186 ETSAILGISRSTVTKHIMAARAKLGAVSKAHAIATAIRTKLL 227


>gi|261365900|ref|ZP_05978783.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
 gi|288565546|gb|EFC87106.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa
           ATCC 25996]
          Length = 220

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 28/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +     S +  L TR D    +                    G S   LV   
Sbjct: 7   IRIALIDDHTLFRSGIKALLTRQDNYEVVGEAAD---------------GLSGVKLVEQT 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +  S  ++          +   V     +         
Sbjct: 52  DPDVVLLDLDMPVMNGREALAQILSSRPEQV--------VVMLTVSEDCEDLTECMRLGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +        +   +    +            +          LT
Sbjct: 104 RGFLLKNIHADFLVDAIRKAAEGDNVFSPEMTARLVQSLIQP-----NTPPATRALDALT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E L +++ G ++  IA  L ++ +T+  ++ SI+RK    +R  A  YAV++N
Sbjct: 159 TRELEILGYLAAGHSNKIIARKLNLAESTIKVHVQSILRKLELSSRVQAAVYAVQHN 215


>gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
 gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium
           jeikeium K411]
          Length = 227

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 11/210 (5%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
           + LD     T+R  A     G     L          +D  +      +  R +   +  
Sbjct: 19  LVLDSQDDITVRWQA---ADGQEACELAESQPVDIILMDVQMPRMDGIEATRQVVSGDS- 74

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F      +       + +     D   +   +  +     +I  
Sbjct: 75  -------GARVIVLTTFDNDNYVLGAVEAGASGFLLKDTDPEDLISAVRTVGDSAAVISP 127

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                +      +    +   V       LT RE+E L  I+ G ++ EIA  L IS  T
Sbjct: 128 KATARLLRSIRMEQTPQRREPVELDLPDPLTPRELEILQLIALGLSNQEIADKLYISLPT 187

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++  ++ KT ++ R   + +A ++++V
Sbjct: 188 VKTHVGRVLTKTQSRDRVHVVLFAFKHHLV 217


>gi|88861290|ref|ZP_01135921.1| response regulator [Pseudoalteromonas tunicata D2]
 gi|88816669|gb|EAR26493.1| response regulator [Pseudoalteromonas tunicata D2]
          Length = 218

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +         +                    G       R +
Sbjct: 2   INVLLVDDHELVRTGIKRILDDIRGFKVIGEAKT---------------GEEAVTFCRQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +      +Y   ++    +   V    P          
Sbjct: 47  HPDIVLMDMNMPGIGGLEATKKI-----CRYCPDVK---VIVLTVHCEDPFPSKVMQIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y + +     +   +  +    R I  +       +A   A    S          L+
Sbjct: 99  HGYLTKSAGPDEMVNAIRAVNSGQRYIAPE-------IAQQIALAQFSGRSDENPFKSLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+    IA  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 152 DRELQIMLMITRGEKVQNIADQLNLSSKTVNSYRYRMFEKLGIGGDVELTHLAIRHKMI 210


>gi|306832892|ref|ZP_07466025.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424967|gb|EFM28100.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 214

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 72/241 (29%), Gaps = 34/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q++ + L  + E     +         +  +                    G     L  
Sbjct: 3   QKIRVTLVDDHEMVRLGLKSFLNLQPDVEVVGEAGN---------------GLDGINLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++      +    +            +    L    +    +       
Sbjct: 48  ELKPDVVVMDLVMPEMSGVEATLKLLEEW--------KEAKILVLTSYLDNEKIYPVIEA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T   A I   +  +      I  +                K++D+      +
Sbjct: 100 GAKGYMLKTSSAAEILNAIQKVARGELAIETE-----------VDKKIKAHDMQPELHDD 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA ++++
Sbjct: 149 LTARERDILRLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHL 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv.
           actinidiae]
 gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 254

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 69/251 (27%), Gaps = 30/251 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS----- 80
               SD  +R+               L   +G    +     +        I  S     
Sbjct: 2   HIRLSDFNSRLQSASTLDQQMDCALLLASDLGFDAVIYDYSPVPVSHDGALITPSLLSLR 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA--------------- 124
           + P D           +   V         P   +  P   T                  
Sbjct: 62  NTPADWHALWCSQGYYQIDPVQHLAVARVSPFVWSYQPRAETVLQTFITDMHKPVVRYLH 121

Query: 125 --GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV 178
              M                 L  L      +  +       E GLLA     +      
Sbjct: 122 DSHMTCGVTVPIHMPKGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFD 181

Query: 179 HWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +     +LT RE ECL+W +EG T+ EIA  L  S  T+  ++ S M+K   K R  
Sbjct: 182 QKMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQ 241

Query: 236 AIAYAVRNNIV 246
           A+  AV   ++
Sbjct: 242 AVVRAVHYRLL 252


>gi|332523307|ref|ZP_08399559.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314571|gb|EGJ27556.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 213

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E     +         +  +                    G     L 
Sbjct: 1   MDNIKVILVDDHEMVRLGLKSFLNMQKDITVVAEASN---------------GRQGVKLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      +    +     +           L    +    +      
Sbjct: 46  LEIQPDVVVMDLVMPELGGVEATLEILQKWSE--------AKILVLTSYLDNEKIYPVIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +      I  +                K+++ H     
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVAKGQLAIETE-----------VDKKIKAHNQHPDLHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R++
Sbjct: 147 ELTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|323494233|ref|ZP_08099345.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323311396|gb|EGA64548.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 209

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +     R D L  +  +           +L               
Sbjct: 2   IRLILADDHRLMQDGLKSRLEREDNLEILACVGTGTEALESTLSL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++++ +  S          +   +   +  +    +       
Sbjct: 47  KPDVLLLDINMPQLNGIEVLQKLEKSGC--------QTAVIMLSMHDSRDYVVRSVKSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         + + +  +      +       +              +    KD  L+
Sbjct: 99  KGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQLN---------EKPQPKDDTLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I  G  + EIA  L IS  TV  +   I +K    + +  +  A++  +V
Sbjct: 150 KRESDVLKEIVNGSGNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLV 208


>gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 211

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 30/235 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           NI+L  +       +  +  +   L  +   +  +     M                  +
Sbjct: 3   NILLVEDQALVRQGLKMMIEQDPQLKVVAEAENGLEALHEMEQ---------------HI 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R     +  + +  ++         F+     +       N
Sbjct: 48  IDLVIMDIRMPVMNGLEATR-----KMKERWPDVKIL---ILTTFNDDEYAVQALKDGAN 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T +  ++   +      G  I  D   ++                    D  L+ 
Sbjct: 100 GFLLKTAEQQKLIQAIYSCMKGGMTIHEDVAAKMVP-------KLLQKSKQVRVDIPLSP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE+     + EGKT+ EIA  L +S  TV N+I  I++K   + R+    YA+++
Sbjct: 153 RELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207


>gi|293390864|ref|ZP_06635198.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951398|gb|EFE01517.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 209

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  +       +  L    +    +                    G     L  
Sbjct: 3   DKLKVLIIDDHPLMRRGIKQLVELEEGFEVVGGAGN---------------GTEGINLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +     D           +   V     +  T    
Sbjct: 48  QTSPDLIILDLNMKGLSGLDTLKALRAEGVD--------ARIVILTVSDAKNDIFTLIDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   L  +     I+                N+           + 
Sbjct: 100 GADGYLLKDTEPDTLLSQLKRIARGEVILSDS-----------IKNLLLERQSAQEPIYS 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A      +
Sbjct: 149 LTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEH 206


>gi|271964734|ref|YP_003338930.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507909|gb|ACZ86187.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G      V         +D  +     
Sbjct: 4   RVLIADDQGMVRTGFTVFLDSQPDIEVVGEAADGREAVARVAELRPDVVLMDVRMPVMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +              P  L    F              + +        ++   
Sbjct: 64  LAATRAI-------LDGDGSPPKVLILTTFDLDDYVYEALRAGASGFLLKDASAQQLAEA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  ++ +     +          ++T RE E L  I++G+++
Sbjct: 117 VRVVAAGEALLAPSVTRRL--ISEFARVGPRRPRGRLD---DITERETEVLALIAQGRSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R+ AI +A    +V
Sbjct: 172 QEIAEELVLSEQTVKTHVGRILAKLNLRDRAQAIVHAYETGLV 214


>gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 503

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 71/241 (29%), Gaps = 26/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+ + +  +       +  +    + L  +   +           L             
Sbjct: 288 EQIRLCIVDDHSFIRESLHTILDGQEDLQVVGMAEDGERALELCERL------------- 334

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                  K D ++       L    A     K +  ++         F            
Sbjct: 335 -------KPDVVLMDLEMPKLDGIHATKMIKKKWPDIRVLILST---FQNTERAKEIIRN 384

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   + D   +   + L++    +I  D    +              D     ++ 
Sbjct: 385 GADGYVLKSIDSRELAESIRLVYRGSTMITHDLFHRMWEENEETGLFESQSDGI---EYG 441

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A    +
Sbjct: 442 LTKRELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGL 501

Query: 246 V 246
           +
Sbjct: 502 L 502


>gi|284034798|ref|YP_003384729.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283814091|gb|ADB35930.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 216

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   S  + +      +  +                    G     LVR  
Sbjct: 2   ITVVLADDQELVRSGFAMILDAQPGIEVVGEAGD---------------GTEAVELVRAL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +         R +                 +    F +            
Sbjct: 47  RPEVALLDVRMPRTDGLAAARAICAGT---------STKVIMLTTFDSDDYVYDALYAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  +A    N  ++      +   LT
Sbjct: 98  SGFLLKDVRRDDLVHAVRVVAAGESLLAPSVTRRL--IADLTRNRPRAG--RVAELDALT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ EIA  L +S +TV  ++++ + K   + R  A+  A    ++
Sbjct: 154 SREREILLLLGRGLSNAEIAAALTVSEHTVKTHVSNTLTKLGLRDRVQAVIAAYETGLI 212


>gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella
           thermoacetica ATCC 39073]
 gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella
           thermoacetica ATCC 39073]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L  R   +  +                          L    
Sbjct: 3   IRVMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVL---------------ALAEES 47

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             +   +D  + +     +  R +   + +           +   ++             
Sbjct: 48  RPEVVVMDLQLGAGRNGVEATRELVEKKPEI--------KVVILSMYDDEELVFRALESG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y      +  +   + L+      +       +                   +  EL
Sbjct: 100 ARGYVLKRAGIEELTTAIRLVARGEAYLDPQIARRVI---EGLQERLPFTRASRPEGPEL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L   +EG T+ EIA  L IS  TV  + A+IM+K     R   + YA++N I+
Sbjct: 157 TERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGIL 216


>gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 231

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           A+++ +D        +    +  G     +   L  W+  Q    D +  SD     V  
Sbjct: 3   AQLLLVDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNTPDLV-ISDVMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               ++ +     Q    +F        + I       + Y    FD   +   +  L  
Sbjct: 62  YQFLKQLREDPRFQALPVVFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLLA 121

Query: 150 KGRI-----ILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREVECLTWI 197
           +               ++  LA   A                     +LT RE   L  +
Sbjct: 122 RRAAKTTTTGDDAETPDLAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLV 181

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 AEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|302864805|ref|YP_003833442.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302567664|gb|ADL43866.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 220

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     +  + E   G +   L R        +D  +     
Sbjct: 3   RLLLADDQTLVRAGFRSILDGEDGIEVVGEAADGTTAVRLTRELRPDVVLMDIRMPLLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F              + +     + A +  G
Sbjct: 63  LAATREIVAGT---------DARVIILTTFDLDDYVYGALRAGASGFLVKDTEPAELIHG 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     +I       +      +      +     +   LT RE E L  ++ G ++
Sbjct: 114 VRVVARGDALIAPAVTRRL----IAEFAARTRHPDPGPRLNALTEREREVLALVAAGLSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           DEIA  L +S  T   +++ IM KT  + R+  +  A  + +
Sbjct: 170 DEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYESGL 211


>gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG]
 gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 21/236 (8%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+++++  ++    + +S +      +      D           L             
Sbjct: 5   EQISVLVVDDEPIIRAGLSAILDSQADITVAGTADDGEEAVEACARL------------- 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +        +  +             R   L    F          A 
Sbjct: 52  --RPDVLLMDIRMPRRDGLWALAELGRRGLLGQ----GRSRVLMLTTFDLDAYVDDALAA 105

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +         +       I  +  + +   +  D    +  +
Sbjct: 106 GASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRI--IEGHLSGRRQPSDQELARLGD 163

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT REV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A 
Sbjct: 164 LTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 219


>gi|261253170|ref|ZP_05945743.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260936561|gb|EEX92550.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 212

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 63/240 (26%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  + +               +  +      V     +  L              
Sbjct: 4   PIKVVIVDDHQVVLDGFIARLQTEPDIEVIGSASNGVEAVEVVKKLL------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D  R +  S        +     L   +       +      
Sbjct: 51  --PDVVLMDVSMPLMNGIDATRIIRES--------IPDAKVLMLTMHDNREYIMKVMQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        R+   +  ++             +           +    +  K   L
Sbjct: 101 AVGYMLKEICAQRMVQAIKTVYLGSTYFCESATQTL---------FSQEVIPNIQKPNPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE   L  ++EG +S +IA +L IS  TV  +  +I  K    + +    YAV   IV
Sbjct: 152 SRREEAVLKLVAEGNSSKKIASLLDISYRTVETHRQNIKHKLDLHSTAELAKYAVEQGIV 211


>gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 224

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 73/226 (32%), Gaps = 19/226 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTE-----------YVGASHFLLVRWDLFQEQKLDSIVSS 80
           +  R++  D        +  L +             GA    LVR        +D  +  
Sbjct: 1   MTIRVLLADDQALLRGMLRRLVDNTPGMEVAGEAADGAEAVELVRAQGADVVLMDIRMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +           L     L    F                +     D   +
Sbjct: 61  TDGIEATRTITA------DPALGEVKVLVLTTFEIDEYVAEAVRAGARGFIGKGADPEDL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +     ++         L+  +QA+  +++     +  ELT RE E L  ++ G
Sbjct: 115 LAAIETVAAGEPMLSAAATA--ALMGRFQAHAPRNWAKETERLAELTPREREMLVLVASG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+D+I+  L +SR+TV  ++   M K     R+  +  A  + +V
Sbjct: 173 LTNDDISERLQLSRHTVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218


>gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 226

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 24/248 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   Q++ I +  + E   + V            +  L        +     +  G   
Sbjct: 1   MSEWEQRIRIAVVDDHEMFRAGV------------IATLQPHFDVVGQA---ADVEG--S 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             ++         LD  V           +  S       V    +    P      +  
Sbjct: 44  VAMIAQTKPDVVLLDVHVPGGEGGGGTEILTKSRPYSPNTVFLALSVSDSP-----QDVG 98

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVH 179
           +        Y + T     +   +  +     +       + +       +         
Sbjct: 99  SVIRAGAQGYVTKTISGDDLVSSIKQVHEGYAVFSPKLAGFVLSAFQNGPSANGAFGGPI 158

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              + + L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     RS    
Sbjct: 159 HDDELDRLSNREQEVMRLIARGYTYKEVASELFISIKTVETHMSSVLRKLQLSNRSELTR 218

Query: 239 YAVRNNIV 246
           +A    IV
Sbjct: 219 WAADRRIV 226


>gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 246

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 28/247 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +       V    +    +  +            +  +               
Sbjct: 6   VKLLIVDDHPLFRQGVRWALSNEPGIQIVGEAANGEEALRWLAQV-----------DAGS 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L R +   +      V          +               
Sbjct: 55  EPNVMLVDLNLPGMSGLELTRQI-RRQYTSIAVV-------MLSMHENDEAAFNALRAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--------YDVH 179
             Y S     A +   L  +     +I  D L E   +A+   + F++         D  
Sbjct: 107 AAYRSKDIKPAALADILRRVAHGEYVIN-DVLLEEPRVASRILSQFRNLPEVQMLVGDPS 165

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE+E L  I+ G ++ EIA  LGIS  TV N+I+SI+RK +   R+ A+ +
Sbjct: 166 IQVFTPLSEREIEVLERIAAGNSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIF 225

Query: 240 AVRNNIV 246
           A+R   +
Sbjct: 226 ALRRGWI 232


>gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
 gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris
           AB-18-032]
          Length = 211

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ ++L  +     + +  L   S  +                       G     + 
Sbjct: 1   MDQIRVLLVDDHAPFRAGLRALLATSADIEVCGEAAS---------------GEEALAVS 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +           +                 L   +            
Sbjct: 46  GRLQPDVVLLDLTMPGMGGIAATERLVRMS--------PHVRVLILSMADDDDSVFAALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         I   + ++     I           +A      F     +     
Sbjct: 98  AGARGYVLKGARRQEIVRSVRVVADGEAIFGPA-------IATRLMGYFAGLARNEPAFP 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E LT I++  T+ +IA   G+S  TV N++++I  K     R+ AI+ A    
Sbjct: 151 ELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVADRAQAISMAREQG 210

Query: 245 I 245
           +
Sbjct: 211 L 211


>gi|302548366|ref|ZP_07300708.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465984|gb|EFL29077.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 29/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  ++E   + +  L +    L  +            +  L               
Sbjct: 13  VRVLVVDDEELTRTGLRTLLSAKPDLTVVGEAADGSEVPPLVEEL--------------- 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D+ +      +  R +  +         + P  +    F              
Sbjct: 58  QPDVVLMDARMPIVDGIEATRRLRATS-------AEPPKVIVITTFENDEYVYDALEAGA 110

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        +I   + L+     ++  + +  +                   +   LT
Sbjct: 111 SGFIRKRAPAQQIAHAIRLVASGDSVLFPEAVARLTT-------GRPPRREAAARVAALT 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  ++EG T+ +IA +L +S  TV  ++ +++ K     R+ A+  A    +
Sbjct: 164 RREAEILRLMAEGLTNQQIAEVLTVSLETVKTHVGNVLTKLGAGNRTQAVILAFEAGL 221


>gi|218709897|ref|YP_002417518.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218322916|emb|CAV19093.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 212

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S V  +    D    +      +     +  +     G     +V+        +D  +
Sbjct: 1   MSEVIRVVIADDHQVVLDGFMARLELEPDISVIGTASNGLEAVEVVKDLRPDVVLMDISM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D    +             +   L   + +     +         Y        
Sbjct: 61  PIMNGIDATHLIKEE-----DP---QAKVLMLTMHNNREYIMKVMQSGAVGYMLKEISAE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   +  +              +           +           L+ RE   L  ++
Sbjct: 113 KMVQAIKTVNQGSTYFCEKVTQNL---------FTQPITPTQSVKNPLSRREEAVLKLVA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G++S EIA  L IS  TV  +  +I  K    + +    YAV + +V
Sbjct: 164 KGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSGLV 211


>gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 53/182 (29%), Gaps = 7/182 (3%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      +  R +         +       +    +           
Sbjct: 44  RRTRPDVVLMDIRMPGMDGIEATRRILA------DDTAGEIRVIILTTYDLDHYVYAALT 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         +   + L+     ++       +    A                 
Sbjct: 98  AGASGFLLKDVTPEHLVAAVRLVRSGDALLAPTITRRLIERFAQ-REEAVPSADVHRDLS 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G ++ E+A  L +S  TV  +I  I+ K   + R  A+  A  + 
Sbjct: 157 GLTPRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRILSKLELRDRVQAVVLAYESG 216

Query: 245 IV 246
           ++
Sbjct: 217 LI 218


>gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             +++ +  +       +  L  +   L  +            + AL             
Sbjct: 5   SPISVFVIDDHTLFRRGLIALIAQDAGLRVVGEAGDAGEALRLVPALA------------ 52

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   LD+ +      D +  +  +              +   V     +       
Sbjct: 53  ---PQVILLDNHLPGVLGVDAIAGLRAAS--------PGSRVVMLTVSEDGQDLAAALRN 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDF 184
               Y   T D   +   L        ++  + + ++     +  A   ++ +       
Sbjct: 102 GAQGYLLKTIDGDLLSEALRRAARGEPVVSPEMMGKLVAAFQSQGAPEPQAPEPDEAPAS 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE E L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  YA   
Sbjct: 162 PLSPREEEVLVQIARGASNKEIARTLDIAETTVKIHVQHILRKLGLSSRVQAAVYASER 220


>gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 217

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +       +  L      L  +            +  L               
Sbjct: 3   VRVVVADDQALVRMGLRVLLEGEADLELVGEAGDGGQAVELVRRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +A  E       L     +    F              
Sbjct: 48  RPDVVLMDVRMPVVDGLEALRRIAGEE------ALAHTRVVVLTTFELDEYVFEALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     D   +   +        ++       +           +       +   LT
Sbjct: 102 SGFLIKDSDPQEMLAAVRAAARGEALLSPSVTRRV----VAAFVSREPGGGRVPRLEVLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  + EG +++EIA  L +S  T   +++  M K   + R+  + +A R  +V
Sbjct: 158 EREREVVGLVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGLV 216


>gi|325576790|ref|ZP_08147405.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160996|gb|EGC73114.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 209

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 34/240 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +++ +++  +       +  L    +    +  +                 G     + 
Sbjct: 2   QEKLKVLIIDDHPLMRRGIKQLVELEENFEVVADVGS---------------GTEGISIA 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD  +      D ++ +     D           L   V     +  T   
Sbjct: 47  IQESPDLIILDLNMKGLSGLDTLKGLRAEGVD--------ARILILTVSDAKNDIFTLID 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   +  +     I+                N+            
Sbjct: 99  AGADGYLLKDTEPDVLLEQIKRIAQGEVILSDS-----------IKNLLLERKHTVDPMD 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A       N
Sbjct: 148 SLTDREMDVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLFFERN 207


>gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
 gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242]
          Length = 267

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DL+ R+   D   + +  +   T   G  +      ++        ++S  +  +  +  
Sbjct: 20  DLIDRLARADRVEAASDIITGFTNAWGLHNVAYAALNMPSPGAARPLLSMTYSVEWQKHY 79

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLTFDVAR 139
           A S       +++       P+  +  +                    N           
Sbjct: 80  AQSGYVDIDPIVRSGLGGILPIDWSEIDRGDPIIRKFFGEAQELDVGANGMSIPIRGRHG 139

Query: 140 IRIGLMLLFPKGRI----ILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +  +    I RD + ++ ++A   + A +    ++    D  L  RE  C
Sbjct: 140 EFALFTVTSNENALEWRAIRRDLIRDLMVVAWNFHAAALRSCGELAEPGDVHLPLREASC 199

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W + GKT +EI  IL IS +TV  ++ S   +  T   +  +A A+   ++
Sbjct: 200 LRWKALGKTDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKALALGLI 252


>gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 215

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 9/213 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +D    W   +       G                 +    D +V               
Sbjct: 3   VDDHPMWRDAVARDLAESGFDVVATAGDGEQAVRRARAAAPDVLVLDLNLPAKPGVQVCK 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E       L+              + +         Y   +     +   +        +
Sbjct: 63  ELVGANPALRVL---VLSASGEHADVLEAVKSGATGYLLKSASTEELIDAVRRTAVGDPV 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                   +       A+           K  +LT RE E L  +++G +  +IA  L I
Sbjct: 120 FTPGLAGLVLGEYRRLASEPAPAPGADEPKAPQLTDRETEVLRLVAKGLSYKQIAERLVI 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ + + K     R   + YA+   +
Sbjct: 180 SHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 210

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 66/241 (27%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E +   +++  +       +  L         +                    G+    
Sbjct: 1   METENYAVMIVDDHPLMRRGIRQLLELDPTFDVVAEASS---------------GSEAIA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD  +      D ++ +     D           +   V  +  +    
Sbjct: 46  LASRAQPDLILLDLNMKGLSGLDTLKALRNEGVD--------ARIIILTVSDSRSDVYAL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   +        +                +    S       
Sbjct: 98  VDAGADGYLLKDSEPEILLSQIHQAASGKNVFSDT-----------ISEYLSSRTELTDP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE++ L  ++ G ++ +IA  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 FADLTERELDVLQEVARGLSNKQIASQLHISEETVKVHIRNLLRKLDVRSRVAATVLYLE 206

Query: 243 N 243
           N
Sbjct: 207 N 207


>gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 60/218 (27%), Gaps = 19/218 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       L  +++    +  + E   G      +         +D  +        ++
Sbjct: 13  DDHPLFRCGLRLSLNQLSNLEVVGEAENGFDAVERIIACKPDMALVDVDMPGLSGISAIK 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +           L +   L               A   + Y     D+  +   +  L 
Sbjct: 73  VLRK--------ALPKLKILVLSALEDDHYVRDAMAAGADGYLLKCVDIDALVQIIGSLC 124

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                +    L                          LT RE + L  + EGK + EIA 
Sbjct: 125 KGIPAVSPYLLNL----------TIDDLSDAKDSGSSLTTREKDVLRCMLEGKENKEIAD 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV ++I  I RK     R  A+  A    I+
Sbjct: 175 ELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKKIL 212


>gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621]
 gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803]
 gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196]
 gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3]
 gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28]
 gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29]
 gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42]
 gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603]
 gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272]
 gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273]
 gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048]
 gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 196

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 17/209 (8%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   +S    +  + E   G     L          +D ++      +  R +      
Sbjct: 2   GVSAYLSTQPDIEVVGEAENGRKGSELALQLRPDIILMDLVMDEMDGVEATRAIIQEW-- 59

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F    +           Y   T   + I   +   +    ++  
Sbjct: 60  ------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYDGETVLEP 113

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++        +  +        + ELT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 114 KVTGKM-------MSRMRQKKEQPLHE-ELTERESEILLLIAEGKSNQEIADELFIALKT 165

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 166 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 194


>gi|307328094|ref|ZP_07607274.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886213|gb|EFN17219.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 238

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 35/239 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +       +  +  R      +                    GA    L   
Sbjct: 33  PIRILIVDDHPVVRDGLRGVLERDPDFTVIGEAGD---------------GAEAVELYER 77

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + ++        +     +         + T  + +   A  
Sbjct: 78  RPADVVLMDLRMPRMGGVEAIKR-----LLRGDPDARIL---VLTTYDTDSDVMGALAAG 129

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +        ++       +               V       L
Sbjct: 130 ATGYLLKDTPREELTRAVRSASSGQSVLSPAVTGRVL------------GQVRKPTQGPL 177

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ L  I++G T+ + A  L IS+ TV  ++  +  K   K R+ A++ A + ++
Sbjct: 178 SDRELQVLRLIADGATNRQAAAALFISQATVKTHLLHVYEKLGVKDRAAAVSEAHKRHL 236


>gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
 gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271]
          Length = 211

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
           + ++L  + E     VS                        M  + E   G   +     
Sbjct: 2   IKVLLVDDHEMVRLGVSSYLM----------------IQSDMEVVGEASNGLEGYHKALE 45

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +  + +             +   +    F    +        
Sbjct: 46  LRPDIILMDLVMDVMDGIEATQKIMADW--------PQAKIIIVTSFLDDEKVYPAMEAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   T   A I   +   +   ++I      +I           +          EL
Sbjct: 98  ASSYLLKTSSAAEIAQAIRSTYQGHKVIEPAVTEKII--------EHRLDQARPKPHDEL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE++ L  I +G ++  IA  L I+  TV  ++++I  K   + R+ A  YAV +++
Sbjct: 150 TNRELDVLRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDRTQAAIYAVHHHL 208


>gi|91788405|ref|YP_549357.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91697630|gb|ABE44459.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 230

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 72/240 (30%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +VL  +D      +SH          +               L         +LV  
Sbjct: 16  PVRVVLIDDDAHMRKVISHELLGDLRTDLVAQAASM----REGRRLISQHEFD-VMLVDL 70

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +L     LD I               +       V+    E            +      
Sbjct: 71  NLGDGNGLDLI-----------DYMKTVHPLAEAVVISAME-------DEQHALRAFELG 112

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y             ++ +   G  I  +    +  L   +      +     K  +L
Sbjct: 113 ATGYLVKNSWFGNFPQAVLQVVNGGASITPNLARRL--LHRLEHTQEAPHPHTAEKRDKL 170

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  ++ G TS EI   L IS  TVN +I +I RK   ++R+ A+ +A    ++
Sbjct: 171 SDREKEVLKAVAAGYTSGEIGSRLMISCQTVNTHIKNIYRKLQVRSRAQAVNFAAHRGLL 230


>gi|302540851|ref|ZP_07293193.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458469|gb|EFL21562.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 58/213 (27%), Gaps = 8/213 (3%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            D           +    G              +  +  + D ++      ++    A  
Sbjct: 4   ADDQTLVRTGFRMILGADGIDVVAEATNGTEAVEAVRRTRPDVVLMDIRMPEMDGLEATR 63

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                      P  +    F          +   + +        ++   +  +     +
Sbjct: 64  RILTGAPAANAPRVIILTTFDLDRYVYAALSAGASGFLLKDVTPEQLTAAVRTVRTGDAL 123

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +       +                       LT RE+E L  ++ G ++ E+A  L ++
Sbjct: 124 LAPAITRRLVQ---RFTQRGSDTATLHRDLASLTPRELEVLGLLARGLSNAELATRLYLA 180

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  ++A I+ K   + R  A+  A    +V
Sbjct: 181 EATVKTHVARILAKLGLRDRVQAVIAAYETGLV 213


>gi|284033634|ref|YP_003383565.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812927|gb|ADB34766.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 212

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 61/229 (26%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A ++     +             G     L R        +D  
Sbjct: 2   IRVLLADDQTLVRGAFALLVNSADDMEVVGEAGT-----GDEAVTLTRDLRPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + S    +  R +   +             L    F T    +         +       
Sbjct: 57  MPSTDGIEATRQICADD--------ASSKVLILTTFETDTNVLRGLRAGACGFLPKDTRP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++       +   A       +       +   LT RE E L  +
Sbjct: 109 DALLDAIRTVAAGEALLSPGATRAVITRAL-----SRPDAPPPERLASLTAREREVLRLV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+++ EIA  L +S  T   ++A I+ K   + R   +  A    ++
Sbjct: 164 AAGRSNQEIADDLVVSPLTAKTHVARILAKLGARDRVHLVIAAYEAGLL 212


>gi|90577248|ref|ZP_01233059.1| transcriptional regulator, LuxR family protein [Vibrio angustum
           S14]
 gi|90440334|gb|EAS65514.1| transcriptional regulator, LuxR family protein [Vibrio angustum
           S14]
          Length = 214

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 63/226 (27%), Gaps = 21/226 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       D     + L+  +          E +    +L           +D  +  
Sbjct: 9   VIVDDHQVVIDGFMARLQLEPDIEVIGTASNGLEALDTVSYL-----QPDVILMDISMPI 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D    +  +        L     L   +       +         Y        ++
Sbjct: 64  MNGIDATEQIKKT--------LPNAKVLMLTMHDNREYIMKVMQVGAMGYMLKEISAEKM 115

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +                 +    ++  KS D++      L+ RE   L  +++G
Sbjct: 116 VQAIKTVNQGATYFCETT---SQTIFTQVSSPVKSPDINP-----LSRREERVLKHVAQG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S +IA  L IS  TV  +  +I  K    + +    YA+   ++
Sbjct: 168 LSSKQIAKALEISYRTVETHRQNIKHKLELHSTAELAKYALEKGLI 213


>gi|21225370|ref|NP_631149.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783610|ref|ZP_05522041.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767492|ref|ZP_06526870.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7688304|emb|CAB89760.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697691|gb|EFD65120.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 59/223 (26%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   G     L          +D  +     
Sbjct: 4   RVLLADDQALLRATFRILIDSDPHMTVVAEAADGQEAVALTLEHRPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F              + +         +  G
Sbjct: 64  LAATAGICAR------TDLSGTRVLILTTFEDDENVALALRSGASGFLGKDVGPDVLLAG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +                   +   LT RE E +   + GK++
Sbjct: 118 IRTVAAGDSLLSPTATRALITRFLASPTDDVPL-AAPERLALLTEREREVMALAALGKSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV ++++  M K   + R+  +  A ++ +V
Sbjct: 177 QEIADHLVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQSGLV 219


>gi|300790034|ref|YP_003770325.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799548|gb|ADJ49923.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 67/224 (29%), Gaps = 13/224 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D     + L   V     +  + E   G     L R        +D  +    
Sbjct: 3   TRILLCDDQQLVRVGLRMIVESQDDLTVVGEAANGEQAITLARDLRPDLVLMDVRMPVLD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                  +           L     L    F           G  + +         + +
Sbjct: 63  GVAATARICAE--------LPDVRVLIITTFDLDEYAYAALRGGASGFLVKDAPSEEMLV 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++       +  L  Y A+      +   +   LT RE + L  I+ G +
Sbjct: 115 AIRGVLRGDSMVSPSVTRRL--LDRYLADE--RDPMDIARLGVLTEREKDVLGLIARGLS 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L I   TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 171 NSEIAAKLYIGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV 214


>gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2]
          Length = 260

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 71/257 (27%), Gaps = 40/257 (15%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + +   GA    LV         +D  +     
Sbjct: 3   RIVIADDQAMVRAGFAALLDAHPDIEVVGQAQDGAECVSLVAELKPDIVLMDVRMPELDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRP----------------------------------TELF 109
            +  R +  +   +  N                                         + 
Sbjct: 63  IEATREILSARSRQPANTAASVNDGKPGFAGQPANAEISKSAVSTSETSGIGDDVPRIIM 122

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
              F              + +         +   + ++     ++       +     + 
Sbjct: 123 LTTFDIDDYVFDAIRAGASGFLLKDAPPNELAEAVRVVASGDGLLAPSVTRRVI---EHF 179

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           A   ++ +     D  LT RE E L  ++ G+T+ EIA  L I+  TV  +++ I+ K  
Sbjct: 180 AAGPQTSNAEALPD--LTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRILYKLD 237

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R+ A+  A  + +V
Sbjct: 238 IRDRAQAVIAAYESGLV 254


>gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 276

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 72/239 (30%), Gaps = 16/239 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           V H     +L       D        +      +G  HF L   D     +  SI+  ++
Sbjct: 27  VKHYYLTEELAQEFTGADREEQLFAALTKAAGRMGFDHFALAF-DRRGTGEPASILVHNY 85

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNR 129
           P    +     +      + +              +              +   +G+ + 
Sbjct: 86  PDAWAKVYVGFDLSGTDPIRRASERSLTGFEWRHVDRYIPLSRGDRQLLSVARDSGVGDG 145

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELT 187
           +                       I  D L    +L A      +             LT
Sbjct: 146 FTVPRHLPGEASGTCSFAVRPHADIPADMLHAAEILGAIAIASARELIGSSPLRPRPILT 205

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ EC+ W + GKT+ EIA ILGIS  TV  ++     + +   RS  I  A+ + ++
Sbjct: 206 ERQRECVLWSARGKTAGEIADILGISEETVVRHLKMARERYSVHCRSMLILCALFDGLI 264


>gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           FV-1]
 gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Antiqua]
 gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CO92]
 gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           CA88-4125]
 gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Angola]
 gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Nepal516]
 gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Pestoides A]
 gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D106004]
 gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           D182038]
 gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           Z176003]
 gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 209

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +          A+TE              
Sbjct: 6   TILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSD------AITEAAKFQ--------- 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +  +  D           +   V     +         +
Sbjct: 51  PDVILLDLNMKGMSGLDTLKALRHNGSD--------ARIIILTVSDARSDVYAMIDAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +   + +               S         ELT 
Sbjct: 103 GYLLKDCEPEILLENIRQAARGENVFSDEVI-----------QYLSSRHEQVNPFSELTE 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 152 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYLEN 206


>gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
 gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL
           4222]
          Length = 199

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 16/183 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D ++      +  R +                 +    F    +    
Sbjct: 31  LALQLRPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPV 82

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T   + I   +   +    ++      ++        +  +        
Sbjct: 83  IEAGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLH 135

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA R
Sbjct: 136 E-ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFR 194

Query: 243 NNI 245
           + +
Sbjct: 195 HQL 197


>gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 225

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 79/244 (32%), Gaps = 32/244 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I+L  +       +  L    + L  +                    G +   LV
Sbjct: 1   MGKITIILADDHAVVRESIRRLLEEREDLEVVGEAGD---------------GENAVELV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    +   LD  +      +  R +     D           L    +           
Sbjct: 46  KNLKPRVVILDIAMPKLNGIEATRKIRELSPDTN--------ILILSAYDYSQYVFALLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +   +   +  +     ++           AA     F+  +     + 
Sbjct: 98  AGATGYLLKDVNCQELIRSIYSVDKGEPVLCPSV-------AAKVMQRFRRGEDSETNNA 150

Query: 185 E--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LTGREVE LT ++ G  + EIA  L +S+ TV  ++ASI  K    +R+ AI +A++
Sbjct: 151 VDSLTGREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLASIFSKLKVGSRTEAILFALK 210

Query: 243 NNIV 246
             ++
Sbjct: 211 EGMI 214


>gi|254412403|ref|ZP_05026177.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180713|gb|EDX75703.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 271

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 40/260 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +       +       D +  +            + +L            
Sbjct: 33  VSPMRVILIEDHNLTRMGLQAALQEQDGIEVVGEAANATQGLKLLESL------------ 80

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      DL R    S  D      +        +  +    +   A
Sbjct: 81  ---KPDVAIVDIGLPDMDGIDLTRKFKSSHTDTQEPETRVL---ILTMHDSEDAVLAAFA 134

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + YC    ++ ++   L +       I       I  +   Q     S ++   +D 
Sbjct: 135 AGADSYCMKDIEIEQLVEALEVTQEGNAWIDPA----IASIVLRQVKRDPSSEMAANQDR 190

Query: 184 -----------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                            + LT RE+E L  I  G ++  IA  L I+  TV  ++ +I+ 
Sbjct: 191 TVKIDGVGPEYEQVIEAYPLTERELEVLELIVAGASNAAIAEKLYITVGTVKTHVRNILN 250

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K     R+ A  +A+R+ ++
Sbjct: 251 KLCVDDRTQAAVHALRSGLI 270


>gi|302036302|ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604366|emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 216

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +     +    L  + + +  +  +                 G S   L 
Sbjct: 1   MNNIRVLLVEDHTLVRAGFRVLLEKIEGILVIGEVSD---------------GRSATKLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  ++     +  R +             R   L   ++           
Sbjct: 46  KELDPDVVLMDIAMAGMNGLEATRRIRQES--------PRTKILMLSMYTNEEYLKEALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   + + +  ++     +                   +  +   G   
Sbjct: 98  AGAAGYLLKDADRNELELAIKAVWRSETYLTPSMTKFA------VDAYCQQGEAQTGPLA 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGR+ E L  I+EG ++ +IA  L +S  TV  + A +M +       G +  A+R  
Sbjct: 152 RLTGRQREILQLIAEGCSTKQIAQRLDLSVKTVETHRAQLMERLDIHDVPGLVRLAIRTG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +       +  L      +  +                    G     L 
Sbjct: 1   MSKIKVLLVDDHTVVRQGLRALLLSESSMEIVGEAST---------------GREAIQLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      +  R +  +E +           L    +           
Sbjct: 46  KKLSPDVIVMDIAMPLLNGLEATRQIVRNEPN--------SKVLVLSSYSDDDYVQKLTE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +              +          F + +    K  
Sbjct: 98  AGAAGYLIKQTAANDLVHAIHDIHAGNAYFSPTIAKRLR---DRAREGFANGNNSNVKTS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EG+ + +IA  LGIS  TV  +   +M K      +G   YA+   
Sbjct: 155 NLTEREAEVLQLIAEGQANKQIASELGISIKTVEKHRQQVMNKLNIHDVAGLTRYAISKG 214

Query: 245 IV 246
           ++
Sbjct: 215 VI 216


>gi|146302391|ref|YP_001196982.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146156809|gb|ABQ07663.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 219

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 11/220 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D    +  L   +        +   + G + +  V  D      LD  +      ++
Sbjct: 8   LADDHQVLIDGLTNLLQTVSNFEIVGSSLNGVTVYDDVIQDQADILVLDISMPQKDGIEV 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++                   +    +  L             Y +       +   +  
Sbjct: 68  LKEFNQKGLP--------CKVIILSSYDDLKIIKEVMKLGAKGYLTKKCAGENMIEAIEA 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           ++            +I   + +  N  K     + ++  L+ RE+E +T I    +  EI
Sbjct: 120 VYEGQEYFSDAVREKI--FSMFSQNNPKLNKNVYIENPILSPREIEIVTLICLEYSGKEI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L IS NTV  +  +IM+K   K   G + YA++NN++
Sbjct: 178 SEKLFISVNTVETHRKNIMKKLNIKNTIGLVKYALKNNLI 217


>gi|303239313|ref|ZP_07325841.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593099|gb|EFL62819.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 210

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 21/230 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              +   V   P   D L  ++ LD  +       A T   G     L          +D
Sbjct: 2   SRIKVLIVDDQPVVRDGLKMILSLDSEIEV-----AATASNGQEALDLCNSG-IDVVLMD 55

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         + +  S          +   +    F+             + Y     
Sbjct: 56  IRMPVMDGVKTTKLIKES--------FPKVKIIILTTFNDDQYIFEALKNGASSYLLKDV 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   I   + +++  G ++  +       +AA   N          +  ELT RE E   
Sbjct: 108 ESEEIINTIKVIYSGGAVLHNN-------IAAKLVNRLSESQDSANQLEELTSREHEIAK 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++E  ++ EIA  L I+  TV N+I +I+ K     R+    Y + NN+
Sbjct: 161 LVAEALSNKEIAAKLFITEGTVKNHITNILSKLDLNHRTKIALYVIENNL 210


>gi|297625366|ref|YP_003687129.1| LuxR family transcriptional regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921131|emb|CBL55678.1| two-component response regulator LuxR [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 236

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 62/234 (26%), Gaps = 4/234 (1%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            RE +        L    D     +     +     M  + E       +         Q
Sbjct: 3   ARETKTMADEPIRLLLADDQEMVRVGFRMVLDSQPDMAVVAEAPNGRDAVDAVLHAAPGQ 62

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D  +       L    A  +             L    F       +      + +  
Sbjct: 63  APDVALMDIRMPVLDGVAATQKIVADS----DTRVLILTTFDLDEYVYSALQAGASGFLL 118

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +     ++       +         + +S      +   LT RE E
Sbjct: 119 KDAGPTELLAAIRAVASGDSVVAPSATRRLLERFVPTLPIAQSGGDTKKRLEALTDRERE 178

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT + +G  + EIA  L +   TV  +I  I+ K   + R   + +A    +V
Sbjct: 179 VLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLRDRVHMVVFAYDAGLV 232


>gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 214

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 17/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
               +  +    D       L   +     +  + E   GA               +D  
Sbjct: 1   MADKIIRVLLVDDHQVVRRGLRTFLEIQEDIEVVGEASDGAEGVARTEELRPDVVLMDIK 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +   +             L    F      +       + Y     D 
Sbjct: 61  MPGTDGIEALRRLRELDNP--------AKVLIVTSFTEQRTVVPALRAGASGYVYKDVDP 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++  +    +           +   +          RE E L  I
Sbjct: 113 DALAGAIRSVHAGHVLLQPEVAGALLAQEDTGTGTGRGSTLT--------EREREVLGLI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ 
Sbjct: 165 ADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211


>gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 199

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 28/222 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   +     M  + +   G     LV         +D  +     
Sbjct: 3   RIVIAEDQRMLLGALASLLDLEEDMKVVGKASNGEDAVKLVHQHQPDICIMDIEMPVKSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +  S              +    F              N Y         +   
Sbjct: 63  LDAAEELKGSG----------CKVMILTTFARPGYFERALKAGANGYLLKDSPSEELASS 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    RI   + +                 D  +G++  LT RE E L  +++GK +
Sbjct: 113 IRSIMAGRRIYAPELV-----------------DEAYGQENPLTEREKEVLLLVADGKNT 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L I+  TV NYI+ I+ K     R  AI ++     
Sbjct: 156 KEIASQLYITTGTVRNYISVILDKLGVSNRIEAIMHSKEKGW 197


>gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 220

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +  +  L   +     M  + +   G       +        +D  +     
Sbjct: 18  RILVADDHVTVLEGLVAIIGRQPDMSVVAQASNGRDAVARWQEHRPDVVLMDLRMPI--- 74

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D V  +    +            +    F +  +           Y         +   
Sbjct: 75  LDGVGVIDELRRMTDS-----ARVIILTTFDSDADISRAIKAGAKGYLLKDAAREELLEC 129

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     I    + ++                       LT RE+  L+ ++ GK++
Sbjct: 130 IRKVYSGETSIPPSLVTKLA---------------AGISSESLTSRELAVLSLLALGKSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI V L IS  TV +++ SI  K    +R+ AIA A R  +V
Sbjct: 175 KEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASRRGLV 217


>gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 222

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 29/237 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  + +   + +            +            +  +               L
Sbjct: 10  TVMIVDDHDMVRAGLKTYLMLEPKFEVIAEAGNGEEALRVLNEI-------------ETL 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D ++           +                 +    F    + +        
Sbjct: 57  PDLILMDLMMPIMDGVQATAAIMER--------FPDLKIVMLTSFLEDDKVLAAVEAGAV 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   T     +   L        ++  D    +                  G D  LT 
Sbjct: 109 SYVLKTVSAEELIYALTGAVKGMPVMTSDVSQALT--------RGLRQRSAQGADEGLTE 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  I++G  + EIA  L IS  TV  ++++++ K   + R+    YA R   
Sbjct: 161 REKEVLLLIADGMANKEIAEELHISIKTVKTHVSNLLMKCELEDRTQLAVYAHRKGW 217


>gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 17/229 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
                     + +  ++ L   +             G     LV         +D  +  
Sbjct: 1   MVADDQTVVREGIVMLLGLLPGIEVVGSAG-----DGEEALRLVAELAPDVVLMDLRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 +    +                Y +   D   I
Sbjct: 56  CDGVEATRRVCAEHPGTQ--------VVVLTTYADDDSLFPALRAGARGYLTKDADADEI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIG-LLAAYQA---NMFKSYDVHWGKDFELTGREVECLTW 196
              +  +      +       +   LA       +  +           LT RE E L  
Sbjct: 108 LRAVEGVMSGDAGLSPQVQRRLLEWLAERGGSDRDEPERETAAGPLPDGLTPREAEVLAL 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ G ++ EIA  L I+  TV  +I ++  KTA + R+ A+ YA R+ I
Sbjct: 168 VAGGLSNPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAVRYAYRHGI 216


>gi|297159346|gb|ADI09058.1| putative two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 65/227 (28%), Gaps = 13/227 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   GA    ++R        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGAEALEVLRTVEVDVVLMDVRMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   E             L    F       +        +         +   
Sbjct: 64  VEATRRICAQEGAP--------KVLILTTFDLDEYAFSALKAGAGGFMLKDVPPGELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEI----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  +     ++       +      +    A           +   LT RE E +  +++
Sbjct: 116 IRAVHSGDAVVAPSTTRRLLDRFAPMLPGAAGGTGPGGSARPELERLTDREREVMLLVAQ 175

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +S  TV  ++  I+ K   + R   +  A  + +V
Sbjct: 176 GLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYESGLV 222


>gi|288923880|ref|ZP_06417961.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344773|gb|EFC79221.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 222

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +    D    +           R   L               
Sbjct: 3   IRLLIVDDQELVRTGLRLILEALDDFEVVGEAGDGEEALARAEEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +    +           +  P  L    F              
Sbjct: 48  RPDVVLLDIRMPRMDGVETTARLTGGGL------IPAPRVLILTTFDLDEYVFGALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +        R+   + +L     ++       +                  G    LT
Sbjct: 102 AGFLLKDASRERLVEAIRVLHAGDALLSPAVTRRL----VETFAARTRPPTPPGLLDLLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  L ++  TV +++ +I+ K   + R  A+  A  N +V
Sbjct: 158 PREREVLVLVARGLSNTEIAGRLVVTEATVKSHVGAILTKLGLRDRVQAVVLAYENGVV 216


>gi|324991970|gb|EGC23892.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
          Length = 210

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G                +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQEDIAEVSEAVNGREGVEQALASRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 213

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 64/227 (28%), Gaps = 23/227 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + L  ++  D                GA    L          +D +
Sbjct: 5   IRIMLVDDHAIVREGLRTLLAEDTEFLIVGEAQN-----GADAIELAAVVRPHVILMDLV 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +       + +           +     +    F              + Y       
Sbjct: 60  MPNVDGIQATQALQSL--------MPSSRIIVLTSFSDDQWVSKAIQAGASGYLLKNVLK 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A + + +  +      +  +    +           +           LT RE   L  I
Sbjct: 112 AELFLAIRTVANGQPFLHAEAQRTL----------MRQSTAPPSLLPSLTERERSVLDGI 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G ++ EIA  L ++  TV  Y+++I+ K A   R+ A  YA+++ 
Sbjct: 162 VGGLSNKEIARSLHLTEGTVKGYVSTILTKLAVADRTQAALYAIKHG 208


>gi|29828005|ref|NP_822639.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605107|dbj|BAC69174.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 221

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    L      +              ++  L               
Sbjct: 2   IRVLLADDQSLVRAGFKALLDAQPDIDVAGEAADGEEALRKVREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                    +V  D     +  +A + +      L     +    F              
Sbjct: 47  ------RPDVVLMDIRMPFLDGLAATRRITDDADLGHVKVVMLTTFELDEYVFEAIRSGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   +  +     ++       +      +                LT
Sbjct: 101 SGFLVKDTEPDELLRAVRAVVQGDALLSPGVTRRL----ISEFAARSKAPAAADSLAGLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G ++DEI   L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 157 EREREVMALVGFGLSNDEIGRRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|21220598|ref|NP_626377.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|5689930|emb|CAB51968.1| putative two-component system regulator [Streptomyces coelicolor
           A3(2)]
          Length = 215

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 9/213 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +D    W   +       G                 +    D +V               
Sbjct: 3   VDDHPMWRDAVARDLAESGFDVVATASDGDQAVRRARAAAPDVLVLDLNLPGRPGVQVCK 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E         +   L         + +         Y   +     +R  +        +
Sbjct: 63  EAVGTDP---KLRVLVLSASGEHADVLEAVKSGATGYLLKSASTEELRDAVRRTAAGDPV 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVILGI 212
                   +       A+               LT RE E L  +++G +  +IA  L I
Sbjct: 120 FTPGLAGLVLGEYRRLASEPAPAAGTDDPGAPRLTDRETEVLRLVAKGLSYKQIAERLVI 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ + + K     R   + YA+   +
Sbjct: 180 SHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|315634983|ref|ZP_07890264.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter
           segnis ATCC 33393]
 gi|315476245|gb|EFU66996.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter
           segnis ATCC 33393]
          Length = 209

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  +       +  L    +    +                    G+    L  
Sbjct: 3   DKLKVLIIDDHPLMRRGIQQLVELEEGFEVVGGAGN---------------GSEGINLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +   + D           +   V     +  T    
Sbjct: 48  QTSPDLIILDLNMKGLSGLDTLKALRAEDVD--------ARIVILTVSDAKNDIFTLIDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   L  +     I+                N+             
Sbjct: 100 GADGYLLKDTEPDTLLSQLKRIAQGEVILSDS-----------IKNLLLERQSSQSPIDS 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  ++ G ++ +IA  L IS  TV  +I +++RK    +R  A      +
Sbjct: 149 LTDREIDVLRLVATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEH 206


>gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 287

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 17/216 (7%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            +  + + VG  +                 + + +             +    VL     
Sbjct: 72  FLSRIIDSVGPFNVTYFGTQCTSSPDRHVNLLTTYSEKWRMRYFDRRYENIDPVLSAARR 131

Query: 108 LFCPVFHT----------LPENITPPAGMD-NRYCSLTFDVARIRIGLMLLFPKGRIILR 156
              PV                      G+          D+ +    + L       + R
Sbjct: 132 ATMPVDWDQLPKTDSGVEDFIADALCYGIRLQGVTFSLRDMHQRLAIVSLQSNDDPAVWR 191

Query: 157 DRLWEIGL------LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R   I        LA + A +    D       +L+ RE E L W S GKTS E  ++L
Sbjct: 192 VRRPRIIPDFIHFSLALHSAMVSSEPDDAEEVPCKLSPREREVLDWASRGKTSWETGMVL 251

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+S  TVN Y+ +  +K    T+  A A AVR  ++
Sbjct: 252 GLSEKTVNFYLRNACQKMNAATKVQAAAQAVREGLI 287


>gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 205

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 64/220 (29%), Gaps = 19/220 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +     +  + E   A   +           +D ++      
Sbjct: 3   RLLLADDHAIVRAGLRALLESEADIEVVGEAGTAEEAIAFCATTP----VDLVLMDLRFG 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +  +                   + T  + ++      + Y         +   +
Sbjct: 59  PGKTGVDATRAVCALPNPPHVLV--VTNYDTDADILSAVEAGASGYLLKDTPPVELLSAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++          +A+      +        +  L+ RE+E L  ++ G+++ 
Sbjct: 117 RAAASGDSVLSPA-------IASKLMTRVRK------PETSLSPREIEVLKLVAAGRSNR 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EI   L +S  TV +++  I  K   K+R+ A+A A    
Sbjct: 164 EIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELG 203


>gi|256395828|ref|YP_003117392.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362054|gb|ACU75551.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 258

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 64/252 (25%), Gaps = 37/252 (14%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     +   +        + E   G     +          +D  +      
Sbjct: 4   VLIVDDQVLIRAGMAAILRAAPGYEVVGEACDGVEAVTMAALTEPDVVLMDIRMPDMDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +  S ++    +L          F              + +        R+   L
Sbjct: 64  AATRAILGSGRENLPRIL------ILTTFDMDQYVYEALRAGADGFVLKDTPPERLLAAL 117

Query: 145 MLLFPKGRIILRDRLWEI--------------------------GLLAAYQANMFKSYDV 178
             +     +        +                             A       +  D 
Sbjct: 118 KAVADGDTLFSSTVTRRLVQAYVTATGLDGEPQGPGPGPGPGPVATPAPGLVPRSRRPDG 177

Query: 179 HWGKD----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
               +      LT RE + L  ++ G ++ EIA  L +S  TV  ++   M K    +R+
Sbjct: 178 PSSAERAALAALTTRETDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRA 237

Query: 235 GAIAYAVRNNIV 246
            A+  A  + +V
Sbjct: 238 QAVVLAYESGLV 249


>gi|88855004|ref|ZP_01129669.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88815532|gb|EAR25389.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 221

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +   +    L    D +  +            +                  
Sbjct: 2   IRVVVADDQQLIRAGFRSLLDAEDDIEVVGEAATGTDVIEVVRR---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               ++ D ++      D     A  +       L     +    F              
Sbjct: 46  ----ERPDVVLMDIRMPDGDGLWATEQIATI-PELSETRIVVVTTFEVDEYVARAIRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   + ++     ++       +      +        V       +T
Sbjct: 101 SGFLVKDTEPVELIRAVRVVASGDALLSPGVTKRL----LERFARGSQVAVDASVLSVIT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + +G T+ EI V L +S  T   +++ IM K A + R   +  A    +V
Sbjct: 157 DREREVLALVGQGLTNAEIGVKLFLSPLTAKTHVSRIMAKLAARDRVQLVVIAYETGLV 215


>gi|308070133|ref|YP_003871738.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305859412|gb|ADM71200.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa
           E681]
          Length = 216

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +     S  S +      +  +                    G   + +V   
Sbjct: 2   IKIVLADDHAIVRSGFSMILNFQSDMEVVGTAAD---------------GIEAYTMVAKY 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  + K K          L   +               
Sbjct: 47  RPDILIMDLSMP-----PGESGLIATGKIKED--HPDTKILILTMHDDEEYLFHILKNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         + + +  +   G  I       +      +     +          L+
Sbjct: 100 SGYVLKNAPDEELLLAIRTIHGGGTYIHPKMATSL----VREFIKKDTTSQSEDPYEILS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +++G  + E+A  L IS  TV    A IM K   ++R   + YA++  ++
Sbjct: 156 KRELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLRSRPELVQYALKKKML 214


>gi|261867392|ref|YP_003255314.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412724|gb|ACX82095.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 209

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  +       +  L    +    +                    G     L  
Sbjct: 3   DKLKVLIIDDHPLMRRGIKQLVELEEGFEFVGGAGN---------------GTEGINLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +     D           +   V     +  T    
Sbjct: 48  QTSPDLIILDLNMKGLSGLDTLKALRAEGVD--------ARIVILTVSDAKNDIFTLIDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   L  +     I+                N+           + 
Sbjct: 100 GADGYLLKDTEPDTLLSQLKRIARGEVILSDS-----------IKNLLLERQSAQEPIYS 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  I+ G ++ +IA  L IS  TV  +I +++RK    +R  A      +
Sbjct: 149 LTDREMGVLRLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEH 206


>gi|326773342|ref|ZP_08232625.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636572|gb|EGE37475.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 255

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 73/249 (29%), Gaps = 21/249 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
           RT+ V  +    D    +      V+    M  + E V G      +            +
Sbjct: 4   RTTGVIRVAVVDDQPLLVSAFSALVAAQPDMEVVLEAVNGRQAVEGLTARATGPHGGADL 63

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V  D    ++  ++   + +          L    F      +       + +     + 
Sbjct: 64  VLMDLRMPVLDGISAIRELRVTPATAALRVLVLTTFDDEDLVLAALGAGAHGFLLKDAEP 123

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI--------------------GLLAAYQANMFKSYD 177
             +   + ++   G  +       +                       +A          
Sbjct: 124 TTLLEAIRVVAGGGSWLDPAVTGTVLAHLDAGTGPGAPPSSASPPASPSAPTDGAVPVVG 183

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    LTGRE   L  + +G ++  I   L ++ +TV +++ +I+ KT    R   +
Sbjct: 184 APSGPYEALTGREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCHNRVELV 243

Query: 238 AYAVRNNIV 246
            YA+   +V
Sbjct: 244 IYALTTGLV 252


>gi|257054552|ref|YP_003132384.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584424|gb|ACU95557.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 72/233 (30%), Gaps = 13/233 (5%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQK 73
           DEQ+      +    D           +        +    G  A     +R    Q   
Sbjct: 8   DEQQGRKPVTVFLVDDHALFRAGARTELESVSDEVRVVGEAGSVAEAVAGIRRTRPQVVL 67

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      +++R +           L     L   V     + I         Y + 
Sbjct: 68  LDVHMPDGGGAEVLRRVR--------PELPDVVFLALSVSDAAEDVIAVIRAGARGYVTK 119

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T     +   +M +     +         G +    A+   S  ++      LT RE + 
Sbjct: 120 TISSRELVSAVMRVADGDAVFSP---RLAGFVLDAFADRPGSEPINDPDLDLLTPRERDV 176

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A    +V
Sbjct: 177 LRLLARGYAYKEIASELFISIKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 229


>gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 74/246 (30%), Gaps = 26/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+  +  + + L  + +   +    +      L+ ++           + A         
Sbjct: 1   MDEHVAPIAVALIDDQQLVRAGFRMVIDSQPDLSVVVEASDGQQALTELAA--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +  R +             +        F      +
Sbjct: 52  ------RHVDVVLMDVQMPKMDGIEATRRLLA------DPDAPKVVV--LTTFDNDEYVM 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +      + +        ++   +  +     +I       +     +   + +      
Sbjct: 98  SAIRAGASGFLLKDVPPEQLLDAIRTVHRGDAVIEARATRRL---LQHVGPLLEGSAPEA 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT REVE L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+ +A
Sbjct: 155 QLPEELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFA 214

Query: 241 VRNNIV 246
            +  +V
Sbjct: 215 FQIGLV 220


>gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 60/225 (26%), Gaps = 13/225 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     M  + E   GA    LV         +D  +     
Sbjct: 6   RLLLADDQQMVRAGFRLVLDAQPDMSVVGEANDGAEALQLVDELAPDVVLMDIRMPVLDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  S              L    F       +      + +         +   
Sbjct: 66  LGATEKIMTSH--------PEAKILVLTTFDLDEYVHSALRAGASGFMLKDAGPTELLAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
           +  +     ++       +  +  +     +             L+ RE E LT + EG 
Sbjct: 118 IRAVRDGDSVVAPSATRRL--IERFIPRQGERAATITDPKLVETLSDREREVLTCVGEGL 175

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L ++  TV  +I  I+ K   + R   +  A    +V
Sbjct: 176 TNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAGLV 220


>gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
 gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192]
          Length = 242

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 15/223 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L     L + M P+  +      +      +G  ++           +  + V   +P  
Sbjct: 8   LLWWDGLRSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKA 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDV 137
            +    +         +         V           +  N     G+           
Sbjct: 68  WLERYQMQNYGAVDPAILNGLRSSEMVVWSDSLFDQSRMLWNEARDWGLCVGATLPIRAP 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREV 191
             + + ++ +    + I      EI L       +         + +       L+ RE 
Sbjct: 128 NNL-LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHRER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 187 EILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|89274998|gb|ABD65961.1| two-component system response regulator [Streptomyces fungicidicus]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 10/227 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             +  L      + R  P   +   +  +  + E   GA    + R        +D  + 
Sbjct: 1   MTIKVLLADDQAMIRRGPCGSSWRTSRDITVVGEAEDGAEAIAMARRLRPDVCLVDIRMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                ++ R +A                +    F           G    +       A 
Sbjct: 61  KLDGIEVTRALA--GPKAADP----MRVIVVTTFDLDEYVYGALRGGAAGFVLKDAGPAL 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +   +    ++       +     +             +  EL+GR +E +  I+ 
Sbjct: 115 LIEAVRAAYNGEALVSPSVTLRL---LKHLNESQAMPRGGAARSSELSGRALEVVRAIAR 171

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T+ EIA  L IS +TV ++++ I  K   + R+    +A  N +V
Sbjct: 172 GRTNQEIAAELFISLSTVKSHLSGIQTKLGVRNRTEIAVWAWENRVV 218


>gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase
           modulator
 gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1]
 gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa]
 gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa]
 gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1]
 gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa]
 gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10]
 gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19]
 gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58]
 gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa]
 gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5]
          Length = 241

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 15/223 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L     L + M P+  +      +      +G  ++           +  + V   +P  
Sbjct: 8   LLWWDGLRSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKA 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDV 137
            +    +         +         V           +  N     G+           
Sbjct: 68  WLERYQMQNYGAVDPAILNGLRSSEMVVWSDSLFDQSRMLWNEARDWGLCVGATLPIRAP 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREV 191
             + + ++ +    + I      EI L       +         + +       L+ RE 
Sbjct: 128 NNL-LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHRER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           E L W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 187 EILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|284045440|ref|YP_003395780.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949661|gb|ADB52405.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 64/240 (26%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +DE     +  L   SD    +                              
Sbjct: 8   PVRVMLVDDDELVRRGLG-LILSSDPTLELAGEAADGDV--------------AVRRAVH 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +         R +           +     +    F      I      
Sbjct: 53  QRPDVVLMDVRMPVLDGIAATRELIAR--------VPAAKVVILTTFEEDDYVIGALRAG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +R  +  +     ++       +                   +  EL
Sbjct: 105 ASGFLLKRSSPEDLRRAIHTVAAGDALLSPSVTRRVI---DRLVEQPVLRPSSDARLSEL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +++G ++ EI   L +   TV +++  ++ K   + R  A+  A  + +V
Sbjct: 162 TPREQEVLLLMAQGLSNREIVDALAVEETTVKSHVRRVLSKLGVRDRVHAVILAYESGLV 221


>gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
 gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP
           102891]
          Length = 205

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 66/234 (28%), Gaps = 34/234 (14%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +       ++ L +  D    +                    G            
Sbjct: 1   MLLVDDHPLMRRGINQLLSFEDEFEVVAEASN---------------GTDAVAQNHEHKP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      D +  +   E       +   T    P      +         + 
Sbjct: 46  DLILLDLNMKGMSGLDTLNALRADE---CDATIVILTVSDSPA-----DIEAIVKAGADG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     +   +   L       +   ++            A      +       ELT R
Sbjct: 98  YLLKDTEPDELIDLLKDSLRGNKAYSQE-----------VATYLAERENTSSVFDELTDR 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E++ L  +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 147 EMQILKEVAKGLRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 200


>gi|291300074|ref|YP_003511352.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569294|gb|ADD42259.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 213

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S       + E  G      ++          D  + +   
Sbjct: 4   ALLIVDDHPVVRDGLRGMLSTQSDFTVVGEAAGGEEALAMLSDHDVDVMLTDLRMPAPSG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+R +A            R   L    + T  + +         Y         +   
Sbjct: 64  AALIRLIAKRH--------PRVRVLVLTTYDTDADVLPAMEAGAVGYLLKDTPRQDLYRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +       +        +  +S      +   L+ RE+E L+ ++ G ++
Sbjct: 116 VRSAADGETALSPSVAARL-------VDRLRSPGPA--RSSALSAREIEVLSLVAAGNSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L IS  TV  ++  I  K     R+ A+A    + ++
Sbjct: 167 KAIAAALFISEATVKTHLLHIYGKLGVNDRAAAVAAGYDSGLL 209


>gi|56459293|ref|YP_154574.1| transcriptional regulator NarL [Idiomarina loihiensis L2TR]
 gi|56178303|gb|AAV81025.1| Nitrate/nitrite response regulator (CheY, HTH domain) [Idiomarina
           loihiensis L2TR]
          Length = 219

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 29/237 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +  +I+L  +       +  L    D +  +                    G    L
Sbjct: 1   MTTEAASIMLVDDHPLLRKGLKQLIAMEDDMTVVAEASN---------------GPDALL 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD  +      + ++ +  S              +   V     + +  
Sbjct: 46  LAVEHDPDLIVLDLNMQGMDGIETLKRLRDSGVT--------SRIIMLTVSDADDDVVAA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   +        ++       +                   +
Sbjct: 98  ITNGADGYLLKDMEPELLLEQIHRAVTGKMVLSEAITEILATALRQ------PTQSTTSQ 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              LT RE E L+ I++G ++  IA  L IS  TV  ++  +++K   ++R  A  +
Sbjct: 152 LSNLTNREHEILSLIAKGMSNKVIARELDISDGTVKVHVKHLLKKLGLRSRVEAAVW 208


>gi|282895907|ref|ZP_06303947.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281199152|gb|EFA74021.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 240

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 76/258 (29%), Gaps = 35/258 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +++I+L  + +     +  +      L  +            +               
Sbjct: 1   MSEISIILIEDHDLTRMGLKTVIQSHPGLKVIGEAANATQGLKLLETT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R     + +           L   +  T    +   A
Sbjct: 49  ---KPDVAVVDIGLPDMDGIELTRRFKRHQTEN---GQNNTKILVLTMDSTEESVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-- 182
              + Y      + ++   +   +     I    +  + L         ++      K  
Sbjct: 103 AGADSYYMKETSINKLTEAINATYAGNSWIDP-AIASVVLRRMRVQAPGEAGSTDRPKMV 161

Query: 183 --------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT RE+E L  I +G ++ +IA  L I+  TV  ++ +I+ K 
Sbjct: 162 KIEGLAIEYEQVLESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKL 221

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A   A+R+ +V
Sbjct: 222 CADDRTQAAVRALRSGLV 239


>gi|160872211|ref|ZP_02062343.1| response regulator UvrY [Rickettsiella grylli]
 gi|159121010|gb|EDP46348.1| response regulator UvrY [Rickettsiella grylli]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+V+  +       +  L      +A +   +                G     LV+  
Sbjct: 2   INVVIVDDHALVRLGMKRLLEDVRDIAVVGEAEN---------------GEDAINLVKET 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +             +   +   VF   P          
Sbjct: 47  KPDVVLMDLKMPGIGGLDATRRLMRVNS--------KLKIIVVTVFSEGPFPDRLVRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +      I  +   ++ L            D       +L+
Sbjct: 99  AGYITKNTSAEELITAIRKVVAGQVYITLEIAQKMALRQV--------SDASKSPFAQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G   + IA  L +S  TVN Y   +  K            A+R  ++
Sbjct: 151 ERELQVMYMVTHGTKVNGIAKKLCLSPKTVNTYRYRLYEKLGVHNDVELTHLALRYGLL 209


>gi|256392927|ref|YP_003114491.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359153|gb|ACU72650.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 236

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 23/240 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +   +VL  + +   + +  +  R+  LA +                    G     + R
Sbjct: 12  EPTRVVLADDQDLVRAGLRLMIDRAPGLAVVGEAAT---------------GHDAVRIAR 56

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +         R +A        + L     L    F            
Sbjct: 57  EARADVVLMDIRMPGLDGLAATRRIAA------DDSLAGVRVLILTTFEVDDYVFEALRS 110

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +     ++        GL+A + +               
Sbjct: 111 GASGFLGKGARPDALIDAIRTVARGDALLSPSATR--GLIARFLSLQDTEPVHPSPLLTT 168

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    +++G ++ +IA  L +S  TV  ++   M K   + R+  +  A +  +
Sbjct: 169 LTDRERELTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGARDRAQLVVLAYQTGL 228


>gi|315501090|ref|YP_004079977.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315407709|gb|ADU05826.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 220

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     +  + E   G +   L R        +D  +     
Sbjct: 3   RLLLADDQTLVRAGFRSILDGEDGIEVVGEAADGTTAVRLTRERRPDVVLMDIRMPLLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F              + +     + A +  G
Sbjct: 63  LAATREIVAGT---------DARVIILTTFDLDDYVYGALRAGASGFLVKDTEPAELIHG 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     +I       +      +      +     +   LT RE E L  ++ G ++
Sbjct: 114 VRVVARGDALIAPAVTRRL----IAEFAARTRHPEPGPRLNALTEREREVLALVAAGLSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           DEIA  L +S  T   +++ IM KT  + R+  +  A  + +
Sbjct: 170 DEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYESGL 211


>gi|256395654|ref|YP_003117218.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361880|gb|ACU75377.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 56/226 (24%), Gaps = 13/226 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + +   G     L          +D  +      
Sbjct: 6   VLLADDQPLSRHGLAMILQAQGDIEVVGQAADGVEAVELAAALQPAIVLMDVRMPRLDGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +                 +    F              + +         +   +
Sbjct: 66  AATRQIIARALP--------TRVIVLTTFDLDDYAFEALRAGASGFLLKNSRPDDLAAAI 117

Query: 145 MLLFPKGRIILRDRLWEI----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +     +I       +           ++              LT RE E    +  G
Sbjct: 118 RAVAAGDAVIAPSTTRRLLDAYADRFTAPSDPPAGASDPSAPLESLTRREREVFDQMVSG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L +S  TV  ++  I+ K A + R  A+ YA     +
Sbjct: 178 LTNKEIAQQLALSETTVKTHVVRILAKLAVRDRVQAVIYAYETGYI 223


>gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 220

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D        +  +S    +  +     G   +  VR        +D  +     
Sbjct: 3   DVLIADDQQVVRQGFELFLSGHPEIRVVGHAKTGVEAYEQVRALRPDVVLMDIRMPHGDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F                +     D   +   
Sbjct: 63  LTATREVLAE--------FPATRVVVITTFDLDEYVFEALDSGAAGFLLKDADPEELSSA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-YDVHWGKDFELTGREVECLTWISEGKT 202
           ++ +   G ++       +  +  +             G D  L+ RE++ +  +S+G  
Sbjct: 115 VLTVAEGGSVLSPRLTSRL--IVEFARRKPAPMSTARSGSDHGLSAREMDVVQLLSQGLG 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++IA  L + ++TV ++I++I +K   +TR   + +A RNN++
Sbjct: 173 NNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAYRNNVI 216


>gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   GA+   L          +D  +     
Sbjct: 4   RVLVVDDQGIVRAGFAAVIDAEEDMAVVGEAADGAAAVRLAGELAPDVVLMDVRMPELDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +            + P  L    F              + +       A +  G
Sbjct: 64  IAATRLITARP--------RAPRVLVLTTFDLDAYVFDALRAGASGFLLKDVHAAELLSG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    A    +             LT RE + L  I+ G T+
Sbjct: 116 IRVVASGESVLAPSATRRLIGHYASGPGVRTPDPEAPAALETLTAREHDVLRLIASGLTN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  LGI+  TV +++ +++RK   + R  A   A    +
Sbjct: 176 AEIAGHLGIAVGTVKSHVNAVLRKLELRDRVQATILAYDLGL 217


>gi|324994067|gb|EGC25981.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327459273|gb|EGF05619.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327490491|gb|EGF22272.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
          Length = 210

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G         D      +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQDDIAEVSEAVNGKEGVEKALADRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|256389895|ref|YP_003111459.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356121|gb|ACU69618.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 234

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 58/194 (29%), Gaps = 5/194 (2%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL----FCPV 112
           G     +VR        +D  +      +  R +         + +  P E         
Sbjct: 37  GEEALRVVRETRPDVVLMDIRMPGMDGLEATRLIMAENAAAITSAIDAPRETPRIIILTT 96

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F              + +         +   + ++     ++       + +       +
Sbjct: 97  FDLDQYVYAAITAGASGFLLKDVSPEHLVAAVHMVRAGDAMLAPAITRRL-VERFAVPTV 155

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +        LT RE E L  +  G ++ E+A    +S  TV  ++A I+ K   + 
Sbjct: 156 NPRTEALHKDLATLTPREREVLGLLGRGLSNAELAARFHLSEATVKTHVARILAKLNLRD 215

Query: 233 RSGAIAYAVRNNIV 246
           R+ A+  A    ++
Sbjct: 216 RAQAVVVAYETGLI 229


>gi|261409608|ref|YP_003245849.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286071|gb|ACX68042.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 24/236 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +D      +  L      +      +                     LL+   
Sbjct: 2   ISVLIADDDPFIRESLKLLVGMDPDIEVSAVAEHGEEALS--------------LLMDGL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +        Y  ++         F      +       
Sbjct: 48  HADVVLMDIRMPVCDGVEGTRRIRE-----RYPDVRVLM---LTTFDDDDYIVEALRNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        RI  G+  +     +I  D   ++  +                + F LT
Sbjct: 100 SGYLLKNIPPDRIIQGIKTVHDGNMLIHPDIARKLTGMLRPTPQPVPRSAEL--EQFGLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             E   +  I+EG ++ EIA  L +S  TV NY+  I+ K   + R+    + ++ 
Sbjct: 158 PAEKRVVALIAEGLSNKEIAAQLYLSEGTVKNYVTEILGKLNLRDRTQIAIFYLKK 213


>gi|291009185|ref|ZP_06567158.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  ++    + +  +    D L  +            +  L               
Sbjct: 16  VTVLLVDDEPLIRTGLRAVIEAEDDLRIVGEAADGAEVLPMVRRL--------------- 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +         +          V   P  +    F              
Sbjct: 61  RPDVVLMDVRMPAVDGIRATTAV-------LDAVADPPAIIVITTFEHDDHVYDALRAGA 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         I   + +      ++    +  +           +           LT
Sbjct: 114 SGFLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLV---------ARRAPAARRPAPTLT 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G ++ EIA  L I   TV  ++ +++ K   + R+ A+ +A  +  V
Sbjct: 165 EREAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFV 223


>gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 226

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 8/224 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L    L     +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEDDMEVIGEASDGAEAVRLAASHLPDVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +         +     + + +   
Sbjct: 64  LAATRHISA------DPALAAVHVVMLTTFEVDEYVVQSLRAGAAGFLGKGAEPSELLGA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKT 202
           +        ++       +      QA            +   LTGRE E L  ++ G +
Sbjct: 118 IRTAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAALTGREREVLVQVAAGLS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 178 NDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 221


>gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
 gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2]
 gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676]
          Length = 199

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 17/209 (8%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   +S    +  + E   G     L          +D ++      +  R +      
Sbjct: 5   GVSAYLSTQPDIEVVGEAENGRKGSELALQLRPDIILMDLVMDEMDGVEATRAIIQEW-- 62

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F    +           Y   T   + I   +   +    ++  
Sbjct: 63  ------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYDGETVLEP 116

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++        +  +        D +LT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 117 KVTGKM-------MSRMRQKKEQPLHD-DLTEREFEILLLIAEGKSNQEIADELFIALKT 168

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 169 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 197


>gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 223

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 27/246 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +     I L  +       +  + +                   ++  L          
Sbjct: 1   MKPTDTKIFLVDDHAILREGLKMILSGQPGFEICGESGDAEKALDQIGKL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                       D  +      DLV+        KYY  ++    +              
Sbjct: 51  -----NPDLVITDISMPGLSGIDLVK-----NLRKYYPNIR---TIILSRHDNKEYVQKL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N Y         +   +  +      +          L+ +  +     D    K
Sbjct: 98  LELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGITT--HFLSGFVGSGKPGEDNQDAK 155

Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E L  ++EG +++ I  IL IS  TV  + A+IM+K      +  + YA
Sbjct: 156 KAFSVLSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYA 215

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 216 IRAGLI 221


>gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 61/241 (25%), Gaps = 23/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++          +  L      +  +                    G       
Sbjct: 1   MEPIRVLIADNHAPFREGLRALLRSEGDIETVGEAAT---------------GREAIARA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S            + L   +F           
Sbjct: 46  ADLQPDVILMDLHMPDGNGIEATHSILASS--------PHISILVLTMFEDDDSVFAALQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       A I   +  +     I        +    A                 
Sbjct: 98  AGARGYLLKGALKAEILRAIRGVSQGEAIFGPTIAKRLMSYFATLKPSAPLPAPPAQAFP 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++  T+ EI   L +S  TV N++++I  K    TR+ AI  A    
Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217

Query: 245 I 245
            
Sbjct: 218 W 218


>gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
 gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 246

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 15/226 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVRC 89
            R++ +D        + A  E       +     + W+L Q+   D +++     + V  
Sbjct: 20  PRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPE-VDG 78

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               E+ +     +    +F        + I       + Y S  FD   +   +  L  
Sbjct: 79  YQFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138

Query: 150 KGRIILRDR---LWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISE 199
           +     ++      +I  LA   A +        G +        +LT RE   L  +++
Sbjct: 139 RRAATRQEAEDGTPDITALAGQIARIENMLKGKTGINLSPSPIKIDLTPREQSVLDLVAQ 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 199 GLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244


>gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +Q+ I++  +D      +    +       +   +                G +     
Sbjct: 7   AEQLRILIVEDDPMMQLGLEQSLSAQPQFQIIGQAED---------------GYAGVAAA 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         + +           L     +      T  E I   +
Sbjct: 52  LSLKPDLVVMDIGLPGLDGIAATQQIKT--------ALPEVHVVMLTSHTTETEVIAALS 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC     V R+   +         +          +A       K    +     
Sbjct: 104 SGADAYCIKGASVDRLLSAIAAAQEGATYLDP-------QIARQVIEHLKP-PSNNNMLG 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE++ L  + EG ++ EIA  L +S NT+  ++  IM K A   R  A   A+R  
Sbjct: 156 QLSQRELDVLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAG 215

Query: 245 IV 246
           +V
Sbjct: 216 LV 217


>gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi]
          Length = 250

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +  +    D ++ S++P + V     +       V+  
Sbjct: 15  IQNYLNRKLKSYGDLKYAYLIMNKKKPT--DVVIISNYPSEWVEIYRSNNYQHIDPVILT 72

Query: 105 PTELFCPVFHTLPENITP------------PAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P        I+                + N Y  +  D       L  +F + R
Sbjct: 73  AINKISPFSWDDNLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFEENR 132

Query: 153 IILRDRL-----WEIGLLAAYQANMFKSY---------DVHWGKDFELTGREVECLTWIS 198
               + +      ++ +L         S          +    +    + RE E L W S
Sbjct: 133 SGELEEIVHNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNLFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+ILGI+ +TV  +I ++++K        AI   V  N++
Sbjct: 193 MGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240


>gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
 gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi
           35000HP]
          Length = 213

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 24/222 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     + +++ L+   +            G     L          LD  +   
Sbjct: 9   LIDDHPLMRQGIRQILELEDNFTIVGEASN-----GNDGIALALDTDPDLIILDLNMKGI 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +R +     D           +         +         + Y     D + +R
Sbjct: 64  SGLDTLRALRKQGVD--------SRIIVLTASDEQSDIFASMDAGVDGYLLKDSDTSELR 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                    +          LT RE + L WI+ G 
Sbjct: 116 ENIRKAVLGETVLSDS-----------IRAHLLNRRPENDPLSVLTDRERDVLQWIATGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 165 SNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATILYLEQ 206


>gi|311899662|dbj|BAJ32070.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 65/222 (29%), Gaps = 10/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA    L          +D  +      
Sbjct: 5   VLLADDEDLMRAGLRMMLDTQPDLRVVGEAADGAQAVRLATELRPDVVLMDVRMPVLDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                 A +E        +         F +              +        ++  G+
Sbjct: 65  A-----ATAELSVRCPGSRVLVLST---FESDAYVFAAVRAGAAGFLLKRTPPEQLLDGI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++       +    A  A    S  V    D  LT RE + L  +  G+++ 
Sbjct: 117 RTVASGEALLSPSVTRRVLAEFARAAPPPPSPAVRAVLD-RLTPREHQVLRLLGRGRSNP 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +   TV  ++  ++ K   + R  A+ +A  + +V
Sbjct: 176 EIAAALYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDHGLV 217


>gi|145296944|ref|YP_001139765.1| hypothetical protein cgR_2844 [Corynebacterium glutamicum R]
 gi|140846864|dbj|BAF55863.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 212

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   ++ +  +  +                 G    L+    
Sbjct: 2   IRVLLADDHEIVRLGLRAVLESAEDIEVVGEVSTAEGAVQAAQEG----GIDVILMDLRF 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q       +D    + R +              P  L    + T  + +       
Sbjct: 58  GPGVQGTQVSTGADATAAIKRNIDN-----------PPKVLVVTNYDTDADILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       + +   +         +         ++A       ++          LT
Sbjct: 107 LGYLLKDAPPSELLAAVRSAAEGDSTLSP-------MVANRLMTRVRT------PKTSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ +I  IL +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 PRELEVLKLVAGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212


>gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 195

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 10/193 (5%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
              G     L    L     +D  +      +  R +                 +    F
Sbjct: 7   RRDGDDAVRLALEHLPDVVLMDIRMPGLDGLEATRRIVA------DRAASHVHVVVVTTF 60

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                      G  + +     +   +   + +      ++       +    +  A+  
Sbjct: 61  ELDEYVTDAIRGGASGFLVKDTEPVDLVRAVRVAARGDALLSPTVTRRL---LSRVADAT 117

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++     G + ELT RE E L  ++ G +++EIA  L +S +TV  +++ +M K   + R
Sbjct: 118 RAVGPVRGVE-ELTPREREVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDR 176

Query: 234 SGAIAYAVRNNIV 246
           +  +  A  + +V
Sbjct: 177 AQLVVAAYESGVV 189


>gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 225

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 30/239 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + IVL  +     S +  L  R      +                    G +    VR
Sbjct: 7   QNIRIVLIDDHTLFRSGIKALLARQSGFEVVGEASD---------------GLTGIKTVR 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +      +          +   V     + +     
Sbjct: 52  QTDPDVVLLDLDMPVMNGRETLAQILSVRPQQC--------VVMLTVSEDGDDLLECMRL 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDF 184
             + +     +   +   +        +   +      ++A    ++ K        +  
Sbjct: 104 GAHGFLLKNINADFLTESIRNAAEGNNVFSPE------MMANMVQSLIKPAKPVEENRLD 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ELT RE+E L +++ G ++  IA  L ++ +TV  Y+ +I+RK    +R  A  YAV++
Sbjct: 158 ELTARELEVLGYLAAGHSNKIIARSLDLAESTVKVYVQNILRKLELTSRVQAAVYAVQH 216


>gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Roseburia intestinalis XB6B4]
          Length = 215

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 30/227 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +       +  L         +      V    ++  +               
Sbjct: 3   VKVMIADDHSMIREGLKQLLELEGDFEVIAEACDGVDCLEKLKTVV-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    ++++ M   +      VL         V + +   +       
Sbjct: 49  -PDILLLDINMPNMNGLEVLQKMKDMKMKVKVLVL--------TVHNEVEYLLKAVDIGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y     + A ++  ++ +      I    +  +        +     D    K   LT
Sbjct: 100 NGYLLKDSESAELKKAILAVVNGEDYIQPSLIPVL-------NSKMLDRDSDSSKIESLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            RE+E L  +S G  + EIA  L IS  TV N++++I +K     R+
Sbjct: 153 RRELEVLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199


>gi|19554120|ref|NP_602122.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391773|ref|YP_227175.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325708|dbj|BAC00329.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41327115|emb|CAF20959.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 212

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   ++ +  +  +                 G    L+    
Sbjct: 2   IRVLLADDHEIVRLGLRAVLESAEDIEVVGEVSTAEGAVQAAQEG----GIDVILMDLRF 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q       +D    + R +              P  L    + T  + +       
Sbjct: 58  GPGVQGTQVSTGADATAAIKRNIDN-----------PPKVLVVTNYDTDTDILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       + +   +         +         ++A       ++          LT
Sbjct: 107 LGYLLKDAPPSELLAAVRSAAEGDSTLSP-------MVANRLMTRVRT------PKTSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ +I  IL +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 PRELEVLKLVAGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212


>gi|328945025|gb|EGG39181.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 210

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G                +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQEDIAEVSEAVNGKEGVEQALASRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|269795459|ref|YP_003314914.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097644|gb|ACZ22080.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 222

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L+ ++  +  +             G     L +        LD  
Sbjct: 2   IRVLVADDQPLVRAGLSALLSAEPDLELVGVA-----SDGLEALELAQTLRPDVACLDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++ R ++  + +    VL          F              + +     D 
Sbjct: 57  MPGLDGIEVTRRLSGPDVEHPVPVL------VLTTFDIDDYVFGALEAGASGFLLKDADP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +      I +     I  L  +              D  LT RE E L  +
Sbjct: 111 DVIVHAVRQVAAGHGTIDQTLTRRI--LREFVDRRSLRPVAAHRADGLLTEREREILLLL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++DEIA  L +  +TV +++A ++ K   ++R  A+ +A +N +V
Sbjct: 169 AQGMSNDEIARELVVEVSTVKSHLARMLPKLGVRSRLQAVVWAYQNRVV 217


>gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           PHL213]
 gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 209

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 34/237 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              I+L  +       +  L       + +                    G     L   
Sbjct: 4   PTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASN---------------GTDGIKLALR 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      D +R +     D           +   V     +        
Sbjct: 49  LEPDVIILDLNMKGLSGLDTLRSLRAQGID--------ARIIVLTVSDEQSDVFALMDAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     D   +   +        ++                    +          L
Sbjct: 101 VDGYLLKDTDTPELLDNIRKAAAGEVVLSETVR-----------QHLLNRQPENDPLSCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE++ L W++ G ++ +IA  L IS  TV  +I +++RK    +R  A    +  
Sbjct: 150 TDRELDVLQWLATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQ 206


>gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     V  + + +  +  +                    GA    LV   
Sbjct: 9   VRVFLLDDHEIVRRGVREVLSDASGIEVVGEAST---------------GAEAAALVPRL 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D+ R +  +  +    +L          +              
Sbjct: 54  RPDVALLDARLEDGSGIDVCRDIHAACPEVGCLIL--------TSYDDDDALFAAIMAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +   G ++                   +           L+
Sbjct: 106 AGYLLKQIRGTDLVGAIRTIAAGGSLLDPAVTAR-------VLARLREGTDVGRASAVLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  I+EG T+ +IA  L +S  TV NY++SI+ K    +R+ A  YA R 
Sbjct: 159 TREREILVLIAEGLTNRQIAGRLHLSEKTVKNYVSSILDKLGLSSRTQAAVYAARR 214


>gi|311894385|dbj|BAJ26793.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 67/245 (27%), Gaps = 26/245 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  ++         +      L  +                    G     L 
Sbjct: 1   MTPIRVLVADDEALLRLAFDTVLGTQPDLLPVGGAAD---------------GTEAVRLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      +  R +                 L    F          A
Sbjct: 46  RELRPDVVLMDVRMPGTDGIEAARRIVRE--------CPGTKVLILTTFDLDEYAFAGLA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMF--KSYDVHWG 181
              + +        ++   +  +     ++       +   +  +       + +     
Sbjct: 98  AGASGFLLKNTRPEQLLAAIRDVAAGDAVLSPRITRRLLEDVRPHLPAAPDHRDHRDLPD 157

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  +  G ++ EIA  L ++  TV +++  I+ K   + R  A+  A 
Sbjct: 158 PSARLSAREHEVLVQVGRGLSNAEIAAALHLAEATVKSHLGRILPKLGLRDRVQAVVLAH 217

Query: 242 RNNIV 246
           R  +V
Sbjct: 218 RAGLV 222


>gi|121053812|gb|ABM47010.1| response regulator [Amycolatopsis orientalis]
          Length = 222

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 71/246 (28%), Gaps = 26/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E+  V IV+  +       ++ L      +  +                    G   
Sbjct: 1   MVEEVPPVRIVIAEDQAAVREGLALLVGTVAGITVVGQAPD---------------GEVA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          +D  +      +  R +           ++         +      +
Sbjct: 46  VRLAGELRPDVVLMDLSMPRCDGVEATRRIKERH-----PEIEIV---VLTTYADDDWVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y + + +   I   +        ++          +         +     
Sbjct: 98  RALEAGALGYLTKSANKHEIGRAVHAAAAGQALLDPQVQRR---VLGAALTSAPASAPPP 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  LT RE   LT I+ G ++ EIA  L +S  TV ++I  I  KT ++ R+ A+ YA
Sbjct: 155 EDDANLTKREAHVLTLIAAGHSNKEIAAELFVSETTVKSHINRIFAKTGSRDRAQAVRYA 214

Query: 241 VRNNIV 246
            +   V
Sbjct: 215 YQAGYV 220


>gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 224

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     M  + E  G A     +     Q   LD  +     
Sbjct: 15  RVFLVDDHAVFRAGVRAELGREADMEVVGEAGGVAEAIAGINALRPQVVLLDVHMPDGGG 74

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             ++  +                 L   V     + I         Y + T   A +  G
Sbjct: 75  VAVLNGIDSGPVC-----------LALSVSDAAEDVIAVIRAGARGYVTKTISGAELADG 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +        +  L ++             +   LT RE+E L  ++ G T 
Sbjct: 124 VRRVAGGDAVFSPRLAGFV--LDSFTGRSNAPEPPLDPELDSLTPRELEVLRLLARGYTY 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 182 REIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 223


>gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 12/226 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +S    +  + E   GA               +D  +     
Sbjct: 4   RVLLADDQQLLRAGFRMVLSAQPDIAVVGEAGDGAEAVERTAQLDPDVVLMDVRMPGVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  +              L    F              + +        ++   
Sbjct: 64  IEATRRIVTAG--------AAARVLILTTFDLDEYAFAGLRAGASGFLLKDVPPEQLTAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           +  +     ++       +    A+                +  ELT RE E L  ++ G
Sbjct: 116 IRAVAGGDAVVAPRVTRALLDTFAHHLPADAAAPVPPHEHPRLSELTAREHEVLLELAAG 175

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +T+ EIA  L +S  TV  ++  I+ K A + R  A+  A +  +V
Sbjct: 176 RTNAEIAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIGLV 221


>gi|256376358|ref|YP_003100018.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920661|gb|ACU36172.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 302

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 57/227 (25%), Gaps = 18/227 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                           ++     +             G     +          +D  + 
Sbjct: 73  VVIADDQALLRGSFEVLVGSAPDLRVLGTAE-----DGERAVAVAARVRPDVVLMDVRMP 127

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    +    +                 L    F              + +       A 
Sbjct: 128 NVDGIEATARI--------CAAQAGVRVLILTTFDLDEYVYAALRAGASGFLLKDTPPAD 179

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++     ++       +           +           +T RE E L  ++E
Sbjct: 180 LLAAIRVVASGEALLSPSVTRRLITEF-----AARPAARPLPALDAVTAREREVLRLVAE 234

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EI   L +SR T+  ++  ++ K   + R+  +  A  + +V
Sbjct: 235 GLSNTEITEALHVSRGTLKTHVGRLLHKLGARDRAQLVIAAYESGLV 281


>gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   G     LV+        +D  +S    
Sbjct: 5   RILLADDHTLLRAGIRSLLEKMPGVEVVGEAADGREALSLVKALQPGVVLMDIAMSGLNG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 +   +       +         Y       A + + 
Sbjct: 65  LEATARIVKE--------FPSSRVIILSMHANEEYVLQTLRAGAAGYLLKDAATAELELA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +       +        +     +       +LT R+ E L  I+EGK++
Sbjct: 117 IQAVSRGDTYLSPAISKRV------IEDYLGRINGQKSPMEQLTPRQREILQLIAEGKST 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A +L +S  TV  +   +M +       G + YA+R  ++
Sbjct: 171 KEMAFLLNLSVKTVETHRTQLMDRLGIHDVPGLVRYAMRMGLI 213


>gi|15603675|ref|NP_246749.1| NarP [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722232|gb|AAK03894.1| NarP [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 209

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 24/228 (10%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           ++ +   +   P     + +++ L                 G+    L          LD
Sbjct: 3   EKMKVLIIDDHPLMRRGIKQLMELAPNFEVVADAGN-----GSEGISLALQTQPDLIILD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      D ++ +     D           L   V     +  T      + Y     
Sbjct: 58  LNMKGLSGLDTLKALRAEGID--------ARILILTVSDLKSDIFTLIDAGADGYLLKDT 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     I+                +      ++    + LT RE++ L 
Sbjct: 110 EPDALLSQIQRIAQGEVILSDS-----------IKDALIERQMNADPIYSLTDREMDVLR 158

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            I+ G ++ +IA  L IS  TV  +I +++RK    +R  A      +
Sbjct: 159 LIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFEH 206


>gi|326773003|ref|ZP_08232287.1| two-component system, regulatory protein [Actinomyces viscosus
           C505]
 gi|326637635|gb|EGE38537.1| two-component system, regulatory protein [Actinomyces viscosus
           C505]
          Length = 243

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 6/190 (3%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L          +D  +      +  R +           L     L   +F   
Sbjct: 57  GARAVTLAAELRPDVVLMDIQMPGLTGIEATRRICA------DPTLAATRVLILTMFEID 110

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         +     D   +   +  +     ++    L  +        +   S 
Sbjct: 111 DYVLGALRAGACGFLLKDADPQSLVDAVRTVHEGQSLLSPQVLARLVARMPSTTSTGTSR 170

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G+   LT R+ E L  I+ G ++ EI V LGI+R T  ++I +++ +   + R+  
Sbjct: 171 STWAGEVEALTPRQREVLLLIARGLSNSEIEVELGITRATCRSHITALLARLGARDRAQL 230

Query: 237 IAYAVRNNIV 246
           +  A    ++
Sbjct: 231 VIAAYEAGLI 240


>gi|312196703|ref|YP_004016764.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228039|gb|ADP80894.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A ++  +  +    +        GA     V         +D  
Sbjct: 5   LRVVVADDQTLVRSGFAALLAAEPDIDVVGQAGT-----GADAVAEVTRTRPDVVLMDIR 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +           L     L    F              + +     + 
Sbjct: 60  MPVLDGIEATRRIRA------DPALAGVQVLILTTFDLDDYVYGALRAGASGFLLKGMEP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L+   G ++       +    A+     +   +    +   T RE E L  +
Sbjct: 114 TALVHAVHLVRDGGALLAPSATRLLIDAQAHAPARRQETSMALAGNV--TEREREVLVLV 171

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG  + +IA  L IS  TV ++++S++ K    TR   +  A  + +V
Sbjct: 172 AEGLANADIADRLSISPLTVKSHLSSLLAKHNLATRVQLVVLAYESGLV 220


>gi|126348327|emb|CAJ90048.1| putative two component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 221

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 64/222 (28%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     +  + E       +         Q    +V  D   
Sbjct: 3   RVLLADDQSLVRAGFRALLDAQPDIEVVGEASDGEAAVRAI-----RQLRPDVVLMDIRM 57

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L+  +A + +      L+    +    F              + +     +   +   +
Sbjct: 58  PLLDGLAATRRITGDAGLRDVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++       +      +           G+   LT RE E +  +  G +++
Sbjct: 118 RAVVAGDALLSPSVTRRL----IAEFAARSKEPAAAGELARLTEREREVMALVGIGLSNE 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 174 EIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|119509629|ref|ZP_01628775.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119465648|gb|EAW46539.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 238

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 35/257 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I L  + +     +     +   +  +            +  L            
Sbjct: 1   MSKIRIALIEDHDLTRVGIRTALLQKSEIEVVGEAANAAEGLKMLKKL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R +                 L   +       +   A
Sbjct: 49  ---QPDIAIIDIGLPDKDGIELTRELKALTHGDDSA----TKVLILTLRDNKEAVLAAFA 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + YC        +   + + +     I    +  I L  A Q    +       ++ 
Sbjct: 102 AGADSYCMKDIKFDNLMEAVRVTYNGNAWIDP-AIARIVLQQAQQNTPLRENVTTVHQNI 160

Query: 184 --------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                         + LT RE+E L  I EG ++ +IA  L I+  TV  ++ +I+ K  
Sbjct: 161 LPNPESEEEENIAAYTLTERELEVLQLIVEGCSNADIAERLYITVGTVKTHVRNILNKLC 220

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 221 ADDRTQAAVRALRSGLV 237


>gi|323497110|ref|ZP_08102130.1| two component LuxR family transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
 gi|323317685|gb|EGA70676.1| two component LuxR family transcriptional regulator [Vibrio
           sinaloensis DSM 21326]
          Length = 209

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +     R D L  +  +        +                   
Sbjct: 2   IKLVLADDHRLMQDGLKSRLEREDNLDILACVGTGSDALEK---------------TLCL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +A S  +           +   +  +    +       
Sbjct: 47  KPDVLLLDINMPQLNGIEVLEELAKSGSE--------TAVIMLSMHDSRDYVVRSVKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         + + +  +      +       +              +    KD  L+
Sbjct: 99  KGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQIN---------EEPEQKDDTLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ G  + EIA  L IS  TV  +   I +K    + +  +  A++  +V
Sbjct: 150 KRESDVLKAIANGACNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLV 208


>gi|297160587|gb|ADI10299.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 237

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + +   G     L R        +D  +     
Sbjct: 13  RVLLADDQTLVRAAFAMLIESAPGMEVVGQAGTGREAVELARTARADLVVMDIRMPDLDG 72

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A        + L     L    + T    +       + +       A +  G
Sbjct: 73  IEATRRIAA------DDDLAGVRILVLTTYDTDDHIVEALRAGASGFLVKDTRPADLLDG 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +               +       L+ RE + LT ++ G  +
Sbjct: 127 IRTVAAGESLLSPGPTARLIARMLRIPAAPPPAALAAAGLGALSDRERQVLTLVARGLNN 186

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S  T   +++ IM K   + R+  +  A    +V
Sbjct: 187 AEIAEALGLSPLTAKTHVSRIMGKLDARDRAQLVIAAYECGLV 229


>gi|312198139|ref|YP_004018200.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229475|gb|ADP82330.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 69/223 (30%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     +VR        +D  +     
Sbjct: 6   RVLLADDQELLRATFRLLLDAAPGIEVVGEAGTGREAVAVVRATNPDVVLMDIRMPD--- 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +A + +      L     L    F T    +       + Y         +   
Sbjct: 63  ---LDGIAATAQITADEALAGVHILVLTTFETDELVLAALRAGASGYLGKGVAPNTLLDA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++         L+  + A+     D       +LT RE E    ++ G ++
Sbjct: 120 IRTVAAGESLLSPTATT--ALVRRFLASPQPRLDARLPAMTDLTAREREITVLVARGLSN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA +L IS  T   ++   M K   + R+  + +A  N ++
Sbjct: 178 EEIAELLVISPATAKTHVNRAMTKVHARDRAQLVVFAYENGLM 220


>gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a]
 gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a]
          Length = 232

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     +     +S    +    E   GA    L          +D  +      
Sbjct: 5   VLLVDDQPLLRLGFRMVLSSQPDLTVAGEAGDGAEAIRLTAELAPDVVLMDVRMPGMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +              L    F              + +       A +   +
Sbjct: 65  EATRQIIAAGGT--------ARILILTTFDLDQYAYAALRSGASGFLLKDVRPADLLSAI 116

Query: 145 MLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
             +     ++       +    A    +          +   LT RE+  L  ++ G ++
Sbjct: 117 RAVAVGDAVVAPSITRRLLDTFAHRLPDPDSPRAPADPRLARLTDRELVVLGEVAAGHSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++  I+ K   + R  A+ +A    +V
Sbjct: 177 AEIAAHLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETGLV 219


>gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 213

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 59/223 (26%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L          +D ++     
Sbjct: 4   RILLVDDHAVVRQGLKMFLGLDPDLQVVGEAENGEEAIRLTGELNPDVVLMDLLMPVMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +                 +           +         Y         +R  
Sbjct: 64  VTAIARIRRD--------FPDTEVIALTSVLEDEAVMKAMRAGAMGYLLKDTQAEELRRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +                              +LT RE + L  ++ G+ +
Sbjct: 116 IKAAAAGQVQLSPRAAA-----------RLMRDVRAPESPEKLTERETDVLRLLALGRAN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I   TV  ++++I+RK    +R+ A  YAVR  +V
Sbjct: 165 KEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIGLV 207


>gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 207

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   + W      + +   G     L+         LD  +     
Sbjct: 3   RVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +++R    S  +           L    + T              Y         +   
Sbjct: 63  IEVMRHTRASAPN--------TRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++  G  +          +AA       +       + EL+ RE++ L  +  G+++
Sbjct: 115 IRSIYEGGAALQSG-------IAARVLKRLATEPA----EDELSQRELDVLQLLVRGESN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA+ L IS NT+ ++++ I  K   ++R+ A+A A++  +V
Sbjct: 164 KAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVALQRGLV 206


>gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC]
 gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC]
 gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 264

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 68/240 (28%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +D      ++           +                 +       +LV  
Sbjct: 47  PVRVLLVDDDAHMRRVIAQELMADQRTLLVAQAAS----VREGRKAIKQHEFD-VMLVDL 101

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +L   +    I            + +S  +    VL                        
Sbjct: 102 NLGDGEGFQLIDYMKSIRPAAEAVIISIMENDDQVLH------------------AFELG 143

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y             ++ +   G  I       +       A           ++ E 
Sbjct: 144 ATGYLVKNSWFGSYPQAVLQVANGGASITPHLARRLLQRFDRAAAPATHEQQQDERETER 203

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A    +
Sbjct: 204 LSQREKEVLRMVASGYTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 263


>gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 236

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            + L R++              L + +G     L        Q     + S++P   +  
Sbjct: 6   HEHLHRLVNESTPQKVFDLAVHLAQDLGMEFMGLKLRIQLAAQAPKLYLYSNYPLAWIER 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
               E  K             PV  T                 G+ + +     D+    
Sbjct: 66  YQRDEFYKQDPAAALSHTSTEPVLWTDELYSEAPDFREQACKHGLRHGWTQSLHDLRHNE 125

Query: 142 IGLMLLFP-KGRIILR--DRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWI 197
             + +  P     I    D+  ++  L     +    +         +++ RE+E L W 
Sbjct: 126 TQVSVARPFGKIDIHELYDKAGQVQWLCHTLHDTICEHHLAKLSSPLKMSDRELEVLKWS 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT    ++GA+A A+   ++
Sbjct: 186 AAGKTAADVACILSLSQSTVNFHIRSVITKTNASNKAGAVAIAMMRGLI 234


>gi|325686912|gb|EGD28936.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 210

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G         +      +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQEDIAEVSEAVNGKEGVEKALAEHPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|300782719|ref|YP_003763010.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792233|gb|ADJ42608.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 25/243 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + + V + L  +     + V            +  +   V       ++ E         
Sbjct: 9   QREPVKVFLVDDHALFRAGVR---------TELDSITDEVRVVGEAGSVAEA-----VAG 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  +      +++R +           L     L   V     + I   
Sbjct: 55  IARTKPQVVLLDVHMPDGGGAEVLRRVR--------PELPDVVFLALSVSDAAEDVIAVI 106

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y + T     +   ++ +     +         G +    A+   S  ++  + 
Sbjct: 107 RAGARGYVTKTISSKELVRAVVRVSDGDAVFSP---RLAGFVLDAFADRPGSAPINDPEL 163

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A   
Sbjct: 164 DLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDR 223

Query: 244 NIV 246
            +V
Sbjct: 224 RLV 226


>gi|326776281|ref|ZP_08235546.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656614|gb|EGE41460.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 222

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     +  S L    D +  +   +                G    L     
Sbjct: 3   IRVLVADDQAVVRTAFSGLLNTQDDIEVVGEAED---------------GEQAVLRAAEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D  R +                 L    F              
Sbjct: 48  RPDVALLDIRMPRLSGIDAARGIVAESGG-------ATRALMLTTFGLDEYVYDALTAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++  +    +      +    +           LT
Sbjct: 101 SGFLLKDATFPELLHAVRVVAGGHALLAPEITGRL----IAEFTRQRVSAPPPRSVDGLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  I+ G ++ +IA  L I+ +TV  +I  +  K   + R+ A+  A    +V
Sbjct: 157 AREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215


>gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 214

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ ++L  + E     +  + +    L  +               L            
Sbjct: 1   MEKIKVLLADDQELILESLHIVLSMEPDLEIVGLARNGEEAVKGCEQL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     +D  +           +           +     +    +  +   +   +
Sbjct: 49  ---MPDMVLMDVNMPVMDGVAATALIKER--------MPATKIIMLTSYKEVEYVLAALS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +  G+ ++   G +I ++       +A+       S       +F
Sbjct: 98  HGAEGYLLKAIHPKDLAAGIRVVQAGGTLISQE-------MASKMIKNMNSATPAKHNEF 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G  + EIA  L +S  TV NYI++I  K   K R  A   A  + 
Sbjct: 151 GLTAREIEVLHKLAAGLRNQEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKARDSG 210

Query: 245 IV 246
           ++
Sbjct: 211 MM 212


>gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
 gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814]
          Length = 223

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +S +    + +     +         +                 +
Sbjct: 2   IKVLIADDQELIRQSLSIVLNTKEGIEVTDTVANGQEVIASVRK---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +      +          +    F              
Sbjct: 47  RPDVILMDIRMPKMDGVQCTKII-KDNYSEI-------KIIILTTFDDDEYVYNALKWGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  ++    +I  D   ++  L +  A      DV   +   LT
Sbjct: 99  SGYLLKGVSMDGLTNAIRTVYSGQAMINPDIATKVVRLFSQMAKADYVVDVDQKRTENLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             E + +  +  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+N
Sbjct: 159 KTEWKIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFRDRTQLAIWAVQN 214


>gi|94496793|ref|ZP_01303368.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58]
 gi|94423806|gb|EAT08832.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58]
          Length = 256

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 16/233 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              DLL  +  +         M  L   +G  HF L+  D    ++ D +   D+P  +V
Sbjct: 11  LADDLLRALRKVASREELAALMTCLASEIGFRHFALIHHDPLAGERPDRVDIRDYPAAIV 70

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLT 134
             +    + +   V++           +  +                   G++       
Sbjct: 71  DRLFDQGQLRRDPVIRGCLFSDGAFLWSDLDKIITFTRQDRHSLEFGAGHGLNEGITVPH 130

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDVHWGKDFELTGREV 191
             +                +    L    +   +     +         G    L  R  
Sbjct: 131 VLLGECIGSCTFAGATDPQLASRYLGFAQITGIFAFQAARRMLLASPLIGPAPRLHPRPR 190

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +C+     G ++ EIA  LG++  TV+ Y+    R      R+  +  AV   
Sbjct: 191 DCVVLAGRGFSNKEIARELGLTPRTVDGYLTEARRLFDAHDRAELVVSAVLAG 243


>gi|326801131|ref|YP_004318950.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551895|gb|ADZ80280.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 223

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 75/246 (30%), Gaps = 27/246 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +     + +  +    D +  +   D  +    R+  L            
Sbjct: 1   MSKITVLLADDHILVRNGIKAMLEADDDIMVIGEADNGMQAIQRVQEL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  ++        +    +   +  T    +    
Sbjct: 49  ---QPDLAIMDIRMPEMNGLEACEAITQNK--------ENTKVVMLSMHDTEDYVLESLR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGK 182
                Y     D       L  +    R         +   LL    ++  +  +     
Sbjct: 98  VGAWGYLLKDTDKNEFIKALKQINNGIRYYSGSVSNVLANQLLGGAGSSSIRVNEAVESN 157

Query: 183 D--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              + L+ RE + L  +  GK + +IA +LG S  T+  +  +IM+K         I  A
Sbjct: 158 TDIYGLSKREKQILGMVINGKHNKDIAEVLGKSVRTIETHRFNIMKKLGVNNAVDMINKA 217

Query: 241 VRNNIV 246
           ++ N++
Sbjct: 218 MKENLI 223


>gi|325977332|ref|YP_004287048.1| response regulator gacA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177260|emb|CBZ47304.1| Response regulator gacA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 9/218 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV------GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D        +  +          GA        +     K D I+       +
Sbjct: 1   MIRVLIADDQELIRESLKIVLSAYPDIKVVGAVSDGTEVLETLPTSKPDVILMDIRMPKM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +      + Y  ++    +    F       +        Y      +  +   ++ 
Sbjct: 61  DGVLCTKAVKENYPNIK---VIILTTFDDDDFIYSALKYGATGYMLKGTSMDDLHDAVVT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +I  D   ++  L +  A    +  V      +++  E   +  I  G ++ EI
Sbjct: 118 ANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKMEWRIIQQIGFGLSNKEI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L +S  TV NY+++I+ K   + R+    +AV+  
Sbjct: 178 AAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|254693131|ref|ZP_05154959.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 3
           str. Tulya]
 gi|261213372|ref|ZP_05927653.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914979|gb|EEX81840.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 26/234 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E + R   V + P   D L  ++     +             GA+    V  ++   
Sbjct: 1   MTNECKIRVLLVDNHPLVLDGLCAVLETYDDIDIA----------GAASNARVALEMALA 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D ++       L+  +   E  K    L     L   +  +     T      + Y 
Sbjct: 51  VNPDVVLMDINMP-LLNGIDAIELFKR--QLPNVCILMLSMHDSREYISTSIMRGASGYI 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G          +              +    +   L+ RE 
Sbjct: 108 LKDVSTNEIVTAIHAVASGGTYFSSGVSEAL-------------LESGEKRSEGLSAREN 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 155 DVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis]
          Length = 245

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 30/233 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D V+    +       V
Sbjct: 12  NEDIKNYIQRRIKAYGNIRYSYLLMNK--KVPLHPAIISNYPLDWVKKYKKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +        P                   N+     + N Y  +  D       L +   
Sbjct: 70  ILTAKGKVAPFAWDDNSVINIKSTDSAVFNLAREYNIVNGYTFVLHDNNNNMATLNVSSG 129

Query: 150 KGRIILRDRLWE-----IGLLAAYQANMFK-----------SYDVHWGKDFELTGREVEC 193
               I  D   E     I +L     +              + +    K    + RE E 
Sbjct: 130 DDDSIFFDESIEVNKEKIQMLLILFHDKMLGLYNKSHHENNTLNKKENKREIFSPRENEI 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W S GKT  EIA+ILGI ++TV  +I +I+RK        AI   +   ++
Sbjct: 190 LYWASVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242


>gi|310640465|ref|YP_003945223.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245415|gb|ADO54982.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 589

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 69/224 (30%), Gaps = 24/224 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E +   V       D L  ++  +            T   G         D      +D 
Sbjct: 382 EIKVLLVDDQLLIRDSLGLLLKNEPDFRIQ------TAEDGNVAVDRCASDPPDVVLMDV 435

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         + +  S  +           +    F  +       A     Y   T D
Sbjct: 436 HMPQMDGITATKLIKESWPNI--------RVIMITTFDDISYATKSLALGAEGYVLKTID 487

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + L+   G +I ++    +          F+         + LT RE+E L  
Sbjct: 488 PRELANTIRLVHHGGTMITQEVAGTL----------FQQMTGTMKNPYGLTERELEILHC 537

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++EG     IA  + +S  TV NYI++I  K   ++R  AI  A
Sbjct: 538 LTEGHRYKAIASKVHLSEGTVRNYISTIYSKMQVQSRDEAIEKA 581


>gi|312200374|ref|YP_004020435.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231710|gb|ADP84565.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             IV+  +D    + +  L T    +  +                    G       +  
Sbjct: 2   TRIVIADDDHLMRAGLVELVTVDPSIQVVGEAAT---------------GREAVTQTQRL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +A          +     L    F              
Sbjct: 47  RPDVVLMDVRMPDLDGIAATRELATR--------VPETRVLILTTFEQDDYVFGALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +                      +LT
Sbjct: 99  SGFLLKRTRPEDLIAAVHTVAAGDALLSPSVTRRVI---DRLTRQPVPDLAGTRALADLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  +++G ++ EIA  L +  +TV  +   ++ K   + R  A+ +A  N I
Sbjct: 156 PREREVLELMAQGLSNREIARHLVVEESTVRTHAKRVLAKLGLRDRIQAVIFAYENGI 213


>gi|239940650|ref|ZP_04692587.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291444087|ref|ZP_06583477.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347034|gb|EFE73938.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 224

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 10/224 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           V     M  + E   GA    L R        +D  +       
Sbjct: 2   LLADDQALLRSAFRVLVDSEPDMEVVGEAADGAQAVELARATGADVVLMDIRMPGTDGLA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R ++          L     +    F      +       + +     +   +   + 
Sbjct: 62  ATRMISA------DPELAAVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPDELLNAIR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKT 202
           +      ++       +      Q    +          +   LTGRE E L  ++ G  
Sbjct: 116 IAAAGEALLSPAATKGLIATFLAQGGSSQEGPDSAEYAERLAALTGREREVLVQVAGGHP 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +D IA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 176 NDRIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLV 219


>gi|227545988|ref|ZP_03976037.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213622|gb|EEI81471.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517050|emb|CBK70666.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
          Length = 296

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 67/301 (22%), Gaps = 71/301 (23%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N     R              A +I     +    +        GA    L        
Sbjct: 1   MNESRSIRVIIADDQELVRAGFAMVIGSQPDMEVVGQA-----PDGAQAVALAESLHPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSE-----------------KDKYYNVLQRPTELFCPVFH 114
             +D  + S    +    +                             +    +    F 
Sbjct: 56  VLMDVRMPSMDGIEATSRITSLSAAPGDAADSASLAADATVSAESADDRPTRVIILTTFD 115

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------------ 162
                +       + +     +   +   +  +F    II       +            
Sbjct: 116 LDEYVMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMQDGYAQH 175

Query: 163 -------------------------GLLAAYQANMFKSYDVHWGKDFE------------ 185
                                    G  A                               
Sbjct: 176 GSLGGETTHSGAVYGSAGGVSGGAAGNGAGSMTGFPSPAGAASDGSNTSRPAYTDPELDL 235

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 236 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 295

Query: 246 V 246
           V
Sbjct: 296 V 296


>gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 226

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + L  + +   +    +      L+ ++           + A             
Sbjct: 1   MAPIAVALIDDQQLVRAGFRMVIDSQPDLSVVVEASDGQQALTELAA------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +             +        F      ++   
Sbjct: 48  --RHVDVVLMDVQMPKMDGIEATRRLLA------DPDAPKVVV--LTTFDNDEYVMSAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +        ++   +  +     +I       +     +   + +          
Sbjct: 98  AGASGFLLKDVPPEQLLDAIRTVHRGDAVIEARATRRL---LQHVGPLLEGSAPESQLPE 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT REVE L  ++ G ++ EIA    +S  TV  ++  ++ KT ++ R  A+ +A +  
Sbjct: 155 ELTPREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|25029338|ref|NP_739392.1| putative two-component response regulator [Corynebacterium
           efficiens YS-314]
 gi|23494626|dbj|BAC19592.1| putative two-component response regulator [Corynebacterium
           efficiens YS-314]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   +D +  +  +    +            G    L+    
Sbjct: 15  IRVLLADDHEIVRLGLRAVLESADDIEVVGEVSTAEAAVQA----AAAGGIDVILMDLRF 70

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q       +D    + R +              P  L    + T  + +       
Sbjct: 71  GPGVQGTQVSTGADATAAIKRNIDN-----------PPKVLVVTNYDTDADILGAIEAGA 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +         ++A       ++          LT
Sbjct: 120 LGYLLKDAPPNELLAAVRSAAEGDSTLSP-------MVANRLMTRVRT------PKTSLT 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI  IL +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 167 PRELEVLKLVAGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 225


>gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
 gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026]
          Length = 238

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M   D        +      +G  +   V         L  +    +P    +       
Sbjct: 13  MQSADSADQLFEIVKNYAHDLGFEYVSYVMSIPSLNGSLKWVRFGAFPDGWEQRYLAQNY 72

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
            +   +L+R       +  +                 G+        +    +   L  +
Sbjct: 73  AEIDPLLRRGVNSIDLLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLSFV 132

Query: 148 FPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEG 200
                +   +      ++ +L                     D  LT RE E L W SEG
Sbjct: 133 RSGPALTPGEISMLRRQLQMLTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWTSEG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 193 KTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 238


>gi|227892373|ref|ZP_04010178.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|227865780|gb|EEJ73201.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 220

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 76/218 (34%), Gaps = 9/218 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFD 85
            + +++  D        +  + +       +    D        +EQ+ D I+      +
Sbjct: 2   FMIKVLIADDQKLIRESLKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPN 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   ++     + Y  ++    +    F       +      + Y         +   + 
Sbjct: 62  MDGTVSTKLVKQSYPHIKI---IILTTFDDDDFIFSALKYGASGYILKGVSPTELHDAIT 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++  G +I  +   ++  L +  A      DV       +T  E   +  +  G ++ E
Sbjct: 119 TVYNGGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVIYQVGRGLSNKE 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I+  L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 179 ISQELFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 216


>gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             ++++ ++L  + +     +  L      L  +   +                G    L
Sbjct: 1   MNMEKIRLLLVDDQQIIRQGLRSLLEAKPDLEVVGEAEN---------------GQQAVL 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            V         +D  +         R +             +   L    F         
Sbjct: 46  QVAALHPDVVLMDVRMPIMDGVAATRLIGQQ--------FPQTRVLVLTTFDDDEYVSRS 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +      +    L +    A     +  +      +
Sbjct: 98  MQLGARGYLLKDTHSDDLAAAIRAVHRGYTQMGPGLLEK----AIAPPAVSSTPPPLPPE 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L+ I  G ++ EIA  L IS  TV N+I+ I+ +   + R+ A  +A R
Sbjct: 154 LAGLTPREREVLSLIVAGASNREIAEALYISERTVKNHISRILSQLHLRDRTQAAMFASR 213


>gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 235

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 22/222 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L+         LD  +     
Sbjct: 6   RVLVADDHPIVRQGLKTFLDIQPDLSVVAEARDGDEALALIAAHEPDVVLLDLNMPGSDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             ++  +A S+         R   +               A     +     D   +   
Sbjct: 66  AKVLTRLAASDH--------RAKVIVLTSVTEAVRVTEAVAAGAAGFLYKDIDPDSLAQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     I  R+ +  +                  G    LT RE E L  ++ G+++
Sbjct: 118 IRSVADGQVIFAREAVTAM-------------TAPAPGPVAALTAREREVLALVAAGRSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++  TV  +++S+ RK     R+ A  YAV + +
Sbjct: 165 REIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAALYAVTHGM 206


>gi|320547831|ref|ZP_08042115.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447591|gb|EFW88350.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 9/218 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDL 86
           + R++  D        +  +         +    D  +        K D I+       +
Sbjct: 1   MIRVLIADDQELIRESLKIVLSAYPDIEVVGAVSDGTEVLETLPTSKPDVILMDIRMPKM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +      ++Y  ++    +    F       +        Y      +  +   ++ 
Sbjct: 61  DGVLCTKAVKEHYPNIK---VIILTTFDDDDFIYSALKYGATGYMLKGTSMDDLHDAVVT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +I  D   ++  L +  A    +  V      +++  E   +  I  G ++ EI
Sbjct: 118 ANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKMEWRIIQQIGFGLSNKEI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L +S  TV NY+++I+ K   + R+    +AV+  
Sbjct: 178 AAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|239931733|ref|ZP_04688686.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440102|ref|ZP_06579492.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342997|gb|EFE69953.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 10/226 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   GA    L R        +D  +     
Sbjct: 4   RVLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVRLAREQRADVVLMDIRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R ++          L     +    F      +       + +     +   +   
Sbjct: 64  LAATRMISA------DPALAAVRVVILTTFEVDDYVVQSLRAGASGFLGKGSEPDELLNA 117

Query: 144 LMLLFPKGRIILRDRLWEIG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           + +      ++       +    L     A           +   LT RE E L  ++ G
Sbjct: 118 IRIAAEGEALLSPAATKGLIARFLAQEVAAGEADRDPARAERLESLTVREREVLVQVAGG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++DEIA  L +S  TV  ++   M K   + R+  +  A  + +V
Sbjct: 178 HSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGLV 223


>gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 215

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 16/227 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L  ++     +             G     L           D  
Sbjct: 3   IRVLIADDQPIVRTGLTMLLDAQPGIDVVGAA-----ADGREAVRLALQLRPDVGLFDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +A  +      ++          F                +       
Sbjct: 58  MPLMDGIEATRLLAGPDVTDPLPIV------VITTFDLDEYVHGALKAGARGFLLKDAGP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +        +I       +       A               LT RE E L  +
Sbjct: 112 ALLTQAIHAAADGDALIAPSVTVRL-----LAAFAQAPTSPPRQPLEPLTAREEEVLVTV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++G+T+ EIA  L I+ +TV  ++AS+MRK   + R     +A    
Sbjct: 167 AQGRTNSEIASQLFITSSTVKAHVASLMRKLGARNRVEVAMWAHETG 213


>gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda
           FL6-60]
          Length = 215

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 34/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       V  L     + + +                    G+    L     
Sbjct: 12  RVMIVDDHPLMRRGVRQLLELDSVFSVVAEASN---------------GSEAIALAERSQ 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     D           +   V     +         +
Sbjct: 57  PDLILLDLNMKGLSGLDTLKALRNEGID--------ARIIILTVSDARSDVYALVDAGAD 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +     L               +         +LT 
Sbjct: 109 GYLLKDSEPEALLAQIRQAAEGRSVFSESVLA-----------YLSTRSEIADPLADLTE 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ L  ++ G ++ +IA  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 158 RELDVLQEVARGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAATVLYLE 211


>gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L + +   C          L + +G  H  L        Q     + S++P + +   
Sbjct: 7   EHLHQFVSERCPRKLFNIAVHLVQDLGMEHLGLNIRIQIATQTPRLYLYSNYPSEWIERY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
              +  K     +       PV  T                 G+ + +     D+     
Sbjct: 67  QRDDFYKQDPAARLSHGQTTPVLWTDELYCEAPQFREAACQHGLRHGWTQSLHDLQHNES 126

Query: 143 GLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            + +  P G+I + +       +  L     ++      D       +++ RE+E L W 
Sbjct: 127 QVSVARPAGQIAINELYEKAASVQWLCHTLHSVLCEHHLDALCPPQPKMSERELEVLRWS 186

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 187 AAGKTAADVASILSLSQSTVNFHIRSVITKTNASNKAGAIAIAALRGWI 235


>gi|121535873|ref|ZP_01667671.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121305538|gb|EAX46482.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 216

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  +     S +  + +  + +  +                    G+    + 
Sbjct: 1   MKKIKVLIVDDHTLMRSGLRLMLSAQEDIEVVGEAAD---------------GSGGIAMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +      + ++ +  ++ D           +   +           A
Sbjct: 46  QKMRPDVVLLDISMPEMSGLECLKTLLANQPD--------LRVILLTMHEDARYVKEGFA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  ++     I          +                   
Sbjct: 98  LGAMGYVLKKAADDVLYQAVRAVYSGEMYIQPS-------ITKAVVAELTERPRADDLRK 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E + L+ I+ G  + EIA  L IS  TV  Y   IM K   K RS  + +A+ N 
Sbjct: 151 PLSDQEKKVLSLIAAGYANREIAEQLVISVKTVETYKYRIMEKLNCKKRSDLVKFALDNG 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|16272666|ref|NP_438884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           Rd KW20]
 gi|145630463|ref|ZP_01786243.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|145632075|ref|ZP_01787810.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145634865|ref|ZP_01790573.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145637737|ref|ZP_01793389.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148827914|ref|YP_001292667.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229844595|ref|ZP_04464734.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260579818|ref|ZP_05847648.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260583177|ref|ZP_05850957.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|319775331|ref|YP_004137819.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|319897771|ref|YP_004135968.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|329122673|ref|ZP_08251251.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
 gi|1171656|sp|P44845|NARP_HAEIN RecName: Full=Nitrate/nitrite response regulator protein homolog
 gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus
           influenzae Rd KW20]
 gi|144983853|gb|EDJ91295.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|144986982|gb|EDJ93512.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           3655]
 gi|145268031|gb|EDK08027.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittAA]
 gi|145269086|gb|EDK09037.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittHH]
 gi|148719156|gb|ABR00284.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittGG]
 gi|229812309|gb|EEP47999.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           6P18H1]
 gi|260093102|gb|EEW77035.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           RdAW]
 gi|260093795|gb|EEW77703.1| nitrate/nitrite response regulator protein narP [Haemophilus
           influenzae NT127]
 gi|301169444|emb|CBW29044.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Haemophilus influenzae 10810]
 gi|317433277|emb|CBY81652.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3031]
 gi|317449922|emb|CBY86134.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           F3047]
 gi|327472547|gb|EGF17977.1| nitrate/nitrite response regulator protein NarL [Haemophilus
           aegyptius ATCC 11116]
          Length = 208

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 24/225 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D+ +   +   P     + +++ LD        + +     G     +          L
Sbjct: 2   QDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSS-----GTEGISVALQTSPDVIIL 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D ++ +     D           L   V     +  T      + Y    
Sbjct: 57  DLNMKGLSGLDTLKGLRAEGVD--------ARILILTVSDAKNDIYTLIDAGADGYLLKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   +   +  +     I+                N+             LT RE+  L
Sbjct: 109 TEPDTLLEQIKRIAQGEVILSDS-----------IKNLLLERTHEDNPLDSLTDREMGVL 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I+ G ++ +IA  L IS  TV  +I +++RK    +R  A   
Sbjct: 158 RQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVL 202


>gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 217

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 27/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G       +  
Sbjct: 3   IRILLIDDHTLFRSGIRALLQRQADFEIVDEAAD---------------GVEGIKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L     +   V     E  T      
Sbjct: 48  RPDVILLDLNMPGLSGLEALQLLVED--------LPDSAVIVLTVSEEAEELATALRRGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +        +I      ++      Q        V      +LT
Sbjct: 100 RGYLLKNIETEALTSAIRRAAAGEPVISEAMTAKL----VQQFRAPAPAPVRQDDTAKLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV   +
Sbjct: 156 AREREIVQGLTRGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERGL 213


>gi|315649798|ref|ZP_07902881.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315274772|gb|EFU38153.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 216

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 14/224 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   + L  ++ +D  +  +       E +     LL          +D  + 
Sbjct: 4   VLIVDDDPFIRESLKLLVGMDPDIEISGVAAHGEEAL----ALLEGGLTADVILMDIRMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +           ++         F      +       + Y        R
Sbjct: 60  VCDGVEGTRRIREQH-----PGIRVLM---LTTFDNDDYIVEALRNGASGYLLKNIPPDR 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I  G+  ++    +I  D   ++  +           DV       LT  E   +  I+E
Sbjct: 112 IIQGIKTVYDGNMLIHPDIARKLTGMLRPAPQSVSQSDVL--GSLGLTPAEKNIVGLIAE 169

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G ++ EIA  L +S  T+ NY+  I+ K   + R+    + ++ 
Sbjct: 170 GLSNKEIAGQLYLSEGTIKNYVTEILGKLNLRDRTQIAIFYLKK 213


>gi|306832609|ref|ZP_07465748.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304425217|gb|EFM28344.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D        +  +       E VGA        +     K D ++       +
Sbjct: 1   MIRVLIADDQELIRESLKIVLSAYPDIEVVGAVSDGTEVLEALPTSKPDVVLMDIRMPKM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +      +++        +    F       +      + Y      +  +   ++ 
Sbjct: 61  DGVLCTKAVKEHFP---NTKVIILTTFDDDDFIYSALKYGASGYLLKGTSMDELHDAVVT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++  D   ++  L +  A    +  V      +++  E   +  I  G ++ EI
Sbjct: 118 VNDGRAMLNPDIATKVFKLFSQMAQSNFAIQVDDALTTDISKMEWRIIQQIGFGLSNKEI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L +S  TV NY++SI+ K   + R+    +AV+  
Sbjct: 178 AAKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 215


>gi|260904804|ref|ZP_05913126.1| response regulatory protein [Brevibacterium linens BL2]
          Length = 206

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  +    D +A +            +  L               
Sbjct: 3   IRVILVDDHPVVRAGLRSVIDAPDHIAVIGEASTGEEALELVDELA-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      + +  + ++++                 F    E +       
Sbjct: 49  ------PDVVLCDLRLGEGIDGIEVTKRLNARPSKPAVL--ILTTFDNDSEIVAALNAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   I   +         +  +       +++      ++          LT
Sbjct: 101 AGYLLKDINPEDISTAIEKASRGETYLPPE-------ISSKVVAAMRNPGPK------LT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  ++ G ++ +IA  L ++  TV +++ ++  K   ++RS AI  A    +V
Sbjct: 148 RRERDVVKLLATGASNAQIAQELFVTEATVKSHLVNVFTKLGVESRSRAIRVAEDQGLV 206


>gi|329928715|ref|ZP_08282564.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937496|gb|EGG33914.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 24/236 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +D      +  L      +      +                     LL+   
Sbjct: 2   ISVLIADDDPFIRESLKLLVGMDPDIEVSAVAEHGEEALS--------------LLMDGL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +        Y  ++         F      +       
Sbjct: 48  HADVLLMDIRMPVCDGVEGTRRIRE-----RYPDVRVLM---LTTFDDDDYIVEALRNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        RI  G+  +     +I  D   ++  +                + F LT
Sbjct: 100 SGYLLKNIPPDRIIQGIKTVHDGNMLIHPDIARKLTGMLRPTPQPVPRSAEL--EQFGLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             E + +  I+EG ++ EIA  L +S  TV NY+  I+ K   + R+    + ++ 
Sbjct: 158 PAEKKVVALIAEGLSNKEIAAQLYLSEGTVKNYVTDILGKLNLRDRTQIAIFYLKK 213


>gi|299068182|emb|CBJ39401.1| response regulator, LuxR family [Ralstonia solanacearum CMR15]
          Length = 210

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++   T              
Sbjct: 2   IRVLIADDHEIVRAGLRQFLSDERDIEVAGEAASGEEVMEQLRTGT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++ +           L        P        I       
Sbjct: 48  -FDVVVLDISMPDRNGIDTLKLVRQRH-----PDLPVLILSTFP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +        +              L+
Sbjct: 99  SGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQ--------TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G++   IA  L +S  TV+ Y   I+ K   K+ +    YA++N +V
Sbjct: 151 KREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209


>gi|302547311|ref|ZP_07299653.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464929|gb|EFL28022.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 220

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 77/239 (32%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + +  +      +  +       +    +  L               
Sbjct: 2   LTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +       V   P  +    F              
Sbjct: 47  RPDVVAMDVRMPLMDGIEATRTVLRT-------VPDPPKIIVVTTFENDEYVYGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A I   + L+     ++    + ++   A+Y  N   +      +   LT
Sbjct: 100 DGFLLKRARPAEIVHAVRLVAEGDSLLFPAAVRQLA--ASYGENDGSAEGRAALERAALT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EIA  L +   TV ++++S++ K   + R+ A+  A  +  V
Sbjct: 158 EREGDVLRLVARGLSNAEIAARLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGFV 216


>gi|218437802|ref|YP_002376131.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218170530|gb|ACK69263.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 12/176 (6%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +  +   D+++ +                 L                    
Sbjct: 58  PHLILLDLELDHESGLDILKYLQTHHSSVI--------TLVLSAHQEENLIFQAMQAGAK 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y      V ++   +  +      +  +          +  N +     +  K+ +LT 
Sbjct: 110 GYIFKINLVQQLGEAVNTVMNDKVYLPPEVATHF----FHYFNTYCDPLSNSDKELDLTK 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L ++ +G ++++IA  L I+  TV  ++ +I  K   K R+ AI  A++ N
Sbjct: 166 REKEVLQYLIQGLSNEQIAKQLYITVATVKAHLTAIFNKLGVKNRTQAIVAALKMN 221


>gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 218

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 69/246 (28%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     ++ ++L  + +   S +  +  R D    +            + A         
Sbjct: 1   MTDPAPEIAVLLVDDQDLVRSGLRRILRRKDGFVIVAECADGDEVPAAIAA--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D +V       +    A         VL          F+      
Sbjct: 52  -----------HRPDVVVMDLRMRRVDGIEATRRLGGRPPVL------ALTTFNEDELLS 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +         +   +  +      +       +            +     
Sbjct: 95  GALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTY-----RKAAPGPRG 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE + LT I +G ++ EIA  L IS  TV ++I  I  K   + R+ AI YA
Sbjct: 150 AAIAELTTRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYA 209

Query: 241 VRNNIV 246
             N IV
Sbjct: 210 YDNGIV 215


>gi|113460191|ref|YP_718248.1| nitrate/nitrite response regulator protein [Haemophilus somnus
           129PT]
 gi|170718227|ref|YP_001785249.1| LuxR family transcriptional regulator [Haemophilus somnus 2336]
 gi|112822234|gb|ABI24323.1| nitrate/nitrite response regulator protein [Haemophilus somnus
           129PT]
 gi|168826356|gb|ACA31727.1| two component transcriptional regulator, LuxR family [Haemophilus
           somnus 2336]
          Length = 209

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 65/238 (27%), Gaps = 34/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +  ++L  +       +  L    +    +                    G+    L  
Sbjct: 3   DKTKVLLIDDHPLMRRGIKQLLELDESFEVIGDAGS---------------GSEGVNLAL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D ++ +     D           L   V     +  T    
Sbjct: 48  QLEPDLIILDLNMKGLSGLDTLKALRTEGID--------ARILILTVSDAKNDIFTLIDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   +   +  +     I+                N+           + 
Sbjct: 100 GADGYLLKDTEPDTLLSQIKRVTQGEVILSES-----------IKNLLLERQHKDDPIYS 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+  L  I+ G  + +IA  L IS  TV  +I +++RK    +R  A     ++
Sbjct: 149 LTDREMNVLALIATGLANKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYFQH 206


>gi|322391432|ref|ZP_08064901.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145515|gb|EFX40907.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 75/219 (34%), Gaps = 9/219 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFD 85
           ++ +++  D        +  +         +    D             D I+       
Sbjct: 1   MMIKVMVADDQSLIRESLKIILSAYSDIEVVATVEDGNHVLSSIPHSHPDLILMDIRMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +A  E  ++Y  ++    +    F       +      + Y         +   + 
Sbjct: 61  MDGVLATKEVKEHYPDIKI---IILTTFDDDEFIYSALKYGASGYLLKGASTEELYEAIK 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++   G +I  D   ++  + +  A    S  V      +L+  E   +  I  G+++ E
Sbjct: 118 VVHQGGAMINPDIASKVFQIFSQMAKSNFSIAVDEDNVKDLSTTEWRIIQEIGYGESNKE 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L +S  TV NY+++I+ K   + R+    ++V+  
Sbjct: 178 IAAKLFLSEGTVRNYLSTILSKLNLRDRTQLAIWSVQTG 216


>gi|301299416|ref|ZP_07205696.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300853022|gb|EFK80626.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 218

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 9/214 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  + +       +    D        +EQ+ D I+      ++   
Sbjct: 4   VLIADDQKLIRESLKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGT 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           ++     + Y  ++    +    F       +      + Y         +   +  ++ 
Sbjct: 64  VSTKLVKQSYPHIKI---IILTTFDDDDFIFSALKYGASGYILKGVSPTELHDAITTVYN 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  L +  A      DV       +T  E   +  +  G ++ EI+  
Sbjct: 121 GGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVIYQVGRGLSNKEISQE 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 181 LFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214


>gi|282860900|ref|ZP_06269966.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564636|gb|EFB70172.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 231

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     R++        +  V        + +        ++  
Sbjct: 14  RVRVVLVDDHRMFRTGVQAEIGRTE--------ETGVEVVGEAADVDQA-----VTVITA 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A         V      L   V     + I    G 
Sbjct: 61  TRPEVVLLDVHLPGGGGVEVLRRCAPMMGAVQDPV----RFLALSVSDAAEDVIGVIRGG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T   + +   +  +     +           LA +  + F S D     +   
Sbjct: 117 ARGYVTKTITGSDLVDSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 229

Query: 245 IV 246
           +V
Sbjct: 230 LV 231


>gi|297191947|ref|ZP_06909345.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723328|gb|EDY67236.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L            L E   G +   L          +D  +      
Sbjct: 13  LIVVDDHPVVRDGLRGMFESAAGFQVLGEAADGTAGVELATRLDPDVVLMDLRMPGGGGV 72

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  ++            R   L    + T  + +         Y         +   +
Sbjct: 73  AAIAELSRRG--------ARSRVLVLTTYDTDSDTLPAIEAGATGYLLKDAPREELFTAV 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++           A+   +  +           L+ RE E L  +++G ++ 
Sbjct: 125 RAAAQGRTVLSPAV-------ASRLVSHVR--APAAPGSEGLSAREREVLELVAKGTSNR 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 176 AIARELFISEATVKTHLTHVFGKLGAKDRAAAVALAYERGIL 217


>gi|288916739|ref|ZP_06411113.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288351813|gb|EFC86016.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G       R        +D  +     
Sbjct: 4   RVLIVDDQALVRGGLAMVLRIHSDIDVVAEAGNGLEAMEAAREHRPDVILMDIRMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 L    F              + +        ++ + 
Sbjct: 64  LEATSRILAEADW-------GVRVLILTTFDPDEYVYEALRAGASAFVLKDIPADQLAVA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G +I       +                   +   LT RE + +  ++ G ++
Sbjct: 117 VRTVADGGALIAPSITRRLI---GRFTERRPVSSTVARRVERLTDRERDVVVAVARGSSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I   TV ++++SI+ K   + R+  + +A  + +V
Sbjct: 174 SEIAKELFIGPATVKSHVSSILTKLGLRDRAQVVVFAYESGLV 216


>gi|242372051|ref|ZP_04817625.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350163|gb|EES41764.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 218

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    + +  +      V    ++                  
Sbjct: 1   MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEY--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++           +  +   K          L   ++              
Sbjct: 46  -----RPDVLILDLSMPPGESGLVATS--KISESFPETKILILTMYDDEEYLFHVLKSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++ + +  ++     I       +      Q+N  +  +        L+
Sbjct: 99  KGYILKNAPDEQLILAVRTVYRGETYIDMKLTTSLVNEFINQSNQ-EEVNYSSDPFKVLS 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + EIA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 158 KRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEYALKKKLL 216


>gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 222

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 70/223 (31%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA+    +         +D  +     
Sbjct: 3   RVALVDDQQLVRAGFRMVIDSQPDLTVVLEASDGAAGVAELERTAADVVLMDVQMPHLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   +             +    F      ++  +   + +         +   
Sbjct: 63  IEATRRLTARDDSP--------KVVVLTTFENDEYVMSAISAGASGFLLKDVPPEELLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I      ++     +   M          + ++T RE+E L  ++ G ++
Sbjct: 115 IRTVHRGDAVIEARSTRKL---LQHVGPMLSDSAAPSLPE-DMTPREIEVLEAMAHGLSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S  TV  ++  ++ KT ++ R  A+ YA +  +V
Sbjct: 171 SEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213


>gi|220914117|ref|YP_002489426.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860995|gb|ACL41337.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 222

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 73/240 (30%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V ++L  +     + +  +    + +A         +    +  L+             
Sbjct: 6   EVRVLLVDDHPVVRAGLRAMLAGFEGIAIAAEASDGRAALKELDRLS----------ALG 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +       +     + +      VL          + T  + +      
Sbjct: 56  EPPDVVLMDLQM-GKGMDGVTATAEIRKLPAPPPVL------ILTTYDTDADILAAVEAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y        ++R  ++     G ++       +              D        L
Sbjct: 109 ASGYMLKDAPPEQLRQAVLQAAAGGTVLAPRAAALL-------------MDRISNPGTAL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T REV+ L  ++ G ++  IA  L +S  TV  ++  I  K     R+ AIA A +  I+
Sbjct: 156 TPREVQLLELLATGLSNRAIAKQLFVSEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 215


>gi|306830368|ref|ZP_07463538.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427393|gb|EFM30495.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 227

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 9/218 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDL 86
           + R++  D        +  +         +    D  +        K D I+       +
Sbjct: 1   MIRVLIADDQELIRESLKIVLSAYPDIEVVGAVSDGTEVLETLPTSKPDVILMDIRMPKM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +      + Y  ++    +    F       +        Y      +  +   ++ 
Sbjct: 61  DGVLCTKAVKENYPNIK---VIILTTFDDDDFIYSALKYGATGYMLKGTSMDDLHDAVVT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +I  D   ++  L +  A    +  V      +++  E   +  I  G ++ EI
Sbjct: 118 ANEGRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKMEWRIIQQIGFGLSNKEI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L +S  TV NY+++I+ K   + R+    +AV+  
Sbjct: 178 AAKLYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|145640801|ref|ZP_01796383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R3021]
 gi|148826630|ref|YP_001291383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229845772|ref|ZP_04465884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
 gi|145274315|gb|EDK14179.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.4-21]
 gi|148716790|gb|ABQ99000.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittEE]
 gi|229810776|gb|EEP46493.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           7P49H1]
          Length = 208

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 24/225 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D+ +   +   P     + +++ LD        + +     G     +          L
Sbjct: 2   QDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSS-----GTEGISVALQTSPDVIIL 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D ++ +     D           L   V     +  T      + Y    
Sbjct: 57  DLNMKGLSGLDTLKGLRAEGID--------ARILILTVSDAKNDIYTLIDAGADGYLLKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   +   +  +     I+                N+             LT RE+  L
Sbjct: 109 TEPDTLLEQIKRIAQGEVILSDS-----------IKNLLLERTHEDNPLDSLTDREMGVL 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I+ G ++ +IA  L IS  TV  +I +++RK    +R  A   
Sbjct: 158 RQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVL 202


>gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR
           [Mycobacterium abscessus ATCC 19977]
 gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR
           [Mycobacterium abscessus]
          Length = 218

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 33/242 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V ++L  + E   + +  +  R D  A +            +                 
Sbjct: 5   EVGVLLVDDQELVRTGLRRILRRKDGFAIVGECADGSEVAAAVSRA-------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +R +  ++             L    F             
Sbjct: 51  -RPDVVIMDLRMKQMSGIEAIRLLHAAQGPP---------ALALTTFDDDELLSGALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              +         +   +  +      +            +   N ++        D + 
Sbjct: 101 AAGFILKDSPAEELVRAVHAVARGEAYLDPAVT-------SRVLNAYRRAPAAVSGDAQD 153

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  I+ G T+ EIA  L IS  TV ++I  I  K   + R+ AI YA  + 
Sbjct: 154 KLTARELDVLALIASGATNSEIAEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHG 213

Query: 245 IV 246
           IV
Sbjct: 214 IV 215


>gi|254382064|ref|ZP_04997426.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340971|gb|EDX21937.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 222

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 68/240 (28%), Gaps = 25/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E   S  + +    + +  +       +    +  L               
Sbjct: 3   IRVVVADDQELVRSGFAMILDAQEDIEVVAEAGDGDAAVEAVDRLA-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R ++                +    F              
Sbjct: 49  -PDVVLLDIRMPVLDGIEACRAISARS---------ACRAVMLTTFDADEYVYEALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFEL 186
           + +         +   + ++     ++       +                    +   L
Sbjct: 99  SGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAATARPAGGPALSAERLEVL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +  G+++ EIA  L +S +TV +++ +++ K   + R  A+  A    ++
Sbjct: 159 TARERETLLHLGRGRSNAEIAAELTVSEHTVKSHVGNVLAKLGLRDRIQAVICAYETGLI 218


>gi|24380308|ref|NP_722263.1| putative response regulator [Streptococcus mutans UA159]
 gi|290579719|ref|YP_003484111.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24378323|gb|AAN59569.1|AE015020_4 putative response regulator [Streptococcus mutans UA159]
 gi|254996618|dbj|BAH87219.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 226

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 72/215 (33%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +       E V A        +  ++ + D ++       +   
Sbjct: 4   VLIADDQELIRESLKIVLSSYKDIEVVDAVDDGFAVLESMKKVQPDLVLMDIRMPKMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +      + Y  ++    +    F              + Y      +  +   ++ +  
Sbjct: 64  LCTKAVKENYPNVK---VIILTTFDDDDFIFKALQYGASGYILKGISMEDLYQAIVTVNK 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I  D   ++  L +  A    +  V       ++  E + +  I  G ++ EIA  
Sbjct: 121 GNAMINPDVATKVVKLFSQMAQSNSAIQVQGNSVENISKAEWKIIQQIGFGLSNKEIAAK 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  T+ NY+++I+ K   + R+    +AV+  
Sbjct: 181 LFLSEGTIRNYLSTILSKLNLRDRTQLAIWAVQTG 215


>gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
 gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +                G+   +      
Sbjct: 6   TIMIVDDHPLMRRGIRQLLELDSNFNVIAEAN---------------CGSDAIIEATKCQ 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     D           +   V     +         +
Sbjct: 51  PDVILLDLNMKGMSGLDTLKALRNEGVD--------ARIIILTVSDARNDVYAMIDAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +       ++   +        A Y ++  +          ELT 
Sbjct: 103 GYLLKDSEPEILLENIRQAAQGEKVFSDEV-------ALYLSSRHEQV----NPFGELTE 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 152 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMFLEN 206


>gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 224

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            +  + +    D       +   +        + E   GA      R        LD  +
Sbjct: 8   PAATTRILLADDHALVRRGVRLILEGEPDFEVVAEAGDGAEAVQAARTHRPDLAILDVAM 67

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R ++  + D           L   ++                Y   +    
Sbjct: 68  PRMTGLQAARELSQLQPD--------LRILMLSMYDNEQYFFQALKAGACGYVLKSVADR 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +             +    +  +        +  +S +        LT RE E L  I+
Sbjct: 120 DLVEACRAAVRGEPFLYPGAVTALI---RNFLDRVRSGEEVSDS--VLTPREEEVLKLIA 174

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG +S EIA  L IS  TV  + A+++ K   + R     YA+R  +V
Sbjct: 175 EGHSSKEIADTLFISIKTVQRHRANLLHKLGLRDRLELTRYAIRAGLV 222


>gi|300785587|ref|YP_003765878.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795101|gb|ADJ45476.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 225

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +     +  +       H L LV         +D  +     
Sbjct: 14  RVVVADDQAAVREGLVTLLDLLPDIAVVGAAADGDHALTLVEQHAPDVVLMDLRMPGVDG 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +            +           ++ +           Y +       I   
Sbjct: 74  IEATRRIHDHH-----PATKIVVLTTYSDDTSILD---ALRAGALGYLTKDAGRDHIAQA 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +    A+  +              LT RE E LT ++ G ++
Sbjct: 126 IRTAAAGQAVLDPTIHARLLAATAHHPD-----TPPSAPPDGLTTRETEVLTQLAAGHSN 180

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  T+   I  I  K     R+ A+ YA ++++
Sbjct: 181 TEIARQLFVSETTIKTRINHIYAKIGAADRAQAVRYAYQHHL 222


>gi|239916849|ref|YP_002956407.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414690|ref|ZP_06246432.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838056|gb|ACS29853.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 227

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 19/235 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +E R       P  S  L  ++     ++    +       G                +D
Sbjct: 3   EELRILIADDQPLMSGALRVLVGSAPGMTCVGVV-----ANGVEAVEACAAIEPDVVLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +  +        ++         F +    +         Y     
Sbjct: 58  MQMPLMDGVEATRRIKDTH-----PAIRVLAITT---FTSEDYLVPALRAGAGGYLLKDA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWGKDFELTGREV 191
           +   I   +  +     ++      ++  LA+ + +       S         +LT RE+
Sbjct: 110 EPPAILGAIQAVHRGESVLSPAVAAKL--LASIERDRPTVGPTSVQPGSPDGSDLTEREL 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L  ++ G+++ EIA  L +S +TV   +  IM K   + R   I  A +  +V
Sbjct: 168 GVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLGLV 222


>gi|84497934|ref|ZP_00996731.1| putative two-component system DNA-binding response regulator
           [Janibacter sp. HTCC2649]
 gi|84381434|gb|EAP97317.1| putative two-component system DNA-binding response regulator
           [Janibacter sp. HTCC2649]
          Length = 238

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 65/240 (27%), Gaps = 17/240 (7%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +VL  +     + V          A +  +         +  + E            
Sbjct: 16  PVRVVLVDDHRMFRTGVRSELAEEAGPA-IEIVGEAPDVEAAVKVIRET----------- 63

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +           +                 L   V     + I      
Sbjct: 64  -RPDVVLLDVHLPGGTGKGGADVINGCFGVDTEAG-APVRFLALSVSDAAEDVIAVIRAG 121

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y + T     +   +  +     +        +       A      D    +   L
Sbjct: 122 ARGYVTKTITARDLGTAVRRVADGDAVFSPRLAGFVLDAFGAAAGEIAEVDEELDR---L 178

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E +  I+ G    E+A  L IS  TV  +++S++RK    +R    A+A+   +V
Sbjct: 179 SAREREVMRLIARGYQYKEVAKELFISVKTVETHVSSVLRKLQLSSRHELTAWAMGRRLV 238


>gi|256824328|ref|YP_003148288.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687721|gb|ACV05523.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 244

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 9/225 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           S +    D           +     M  + E   G S    ++        +D  +    
Sbjct: 3   SRIFLVDDQSLVRAGFRMVLDAQPDMSVVGEAPDGQSAVDQLKTIAADVVLMDIRMPRLD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +   +K         P  +    F              + +         +  
Sbjct: 63  GIEATRVLLGRDKH---PGGAEPKVVVLTTFDMDEYAYAALEAGASGFLLKDAGPEELLA 119

Query: 143 GLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +  +     ++       +       L    A++    +        LT RE E    +
Sbjct: 120 AIRAVASGDAVVAPSTTKRLLERFVPTLTPEVADVASPAEQQEYLREVLTEREYEVFEAV 179

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + G ++ EIA  L ++  T+  +I  ++ K   + R   +  A  
Sbjct: 180 AAGLSNTEIAKELFVAEATIKTHIGRLLFKLGCRDRVQLVITAYE 224


>gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 223

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 27/246 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +     I L  +       +  + +                   ++  L          
Sbjct: 1   MKPTDTKIFLVDDHAILREGLKMILSGQPGFEICGESGDAEKALDQIGKL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                       D  +      DLV+        KYY  ++    +              
Sbjct: 51  -----NPDLVITDISMPGLSGIDLVK-----NLRKYYPNIR---TIILSRHDNKEYVQKL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N Y         +   +  +      +          L+ +  +     D    K
Sbjct: 98  LELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGITT--HFLSGFVGSGKPGEDNQDAK 155

Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E L  ++EG +++ I  IL IS  TV  + A+IM+K      +  + YA
Sbjct: 156 KAFSILSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYA 215

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 216 IRAGLI 221


>gi|17987865|ref|NP_540499.1| transcriptional regulatory protein DEGU [Brucella melitensis bv. 1
           str. 16M]
 gi|23501247|ref|NP_697374.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|148559651|ref|YP_001258379.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|161618323|ref|YP_001592210.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842630|ref|YP_001627034.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|225626863|ref|ZP_03784902.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225851885|ref|YP_002732118.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|254701158|ref|ZP_05162986.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254703704|ref|ZP_05165532.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|254707920|ref|ZP_05169748.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709500|ref|ZP_05171311.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254713082|ref|ZP_05174893.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M644/93/1]
 gi|254716565|ref|ZP_05178376.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M13/05/1]
 gi|256030994|ref|ZP_05444608.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044064|ref|ZP_05446975.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060484|ref|ZP_05450655.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112861|ref|ZP_05453782.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159043|ref|ZP_05456876.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254397|ref|ZP_05459933.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256264603|ref|ZP_05467135.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368799|ref|YP_003106305.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168126|ref|ZP_05754937.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260563426|ref|ZP_05833912.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567044|ref|ZP_05837514.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|261218363|ref|ZP_05932644.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221562|ref|ZP_05935843.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|261315409|ref|ZP_05954606.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317025|ref|ZP_05956222.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261320788|ref|ZP_05959985.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324478|ref|ZP_05963675.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261751695|ref|ZP_05995404.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754348|ref|ZP_05998057.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757583|ref|ZP_06001292.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265988062|ref|ZP_06100619.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990479|ref|ZP_06103036.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994307|ref|ZP_06106864.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997525|ref|ZP_06110082.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|294851727|ref|ZP_06792400.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306842393|ref|ZP_07475048.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|306844978|ref|ZP_07477559.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|17983597|gb|AAL52763.1| two-component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23347130|gb|AAN29289.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|148370908|gb|ABQ60887.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
 gi|161335134|gb|ABX61439.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673353|gb|ABY37464.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|225618520|gb|EEH15563.1| transcriptional regulatory protein DEGU [Brucella ceti str. Cudo]
 gi|225640250|gb|ACO00164.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|255998957|gb|ACU47356.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260153442|gb|EEW88534.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156562|gb|EEW91642.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260920146|gb|EEX86799.1| LuxR family DNA-binding response regulator [Brucella ceti B1/94]
 gi|260923452|gb|EEX90020.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293478|gb|EEX96974.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296248|gb|EEX99744.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300458|gb|EEY03955.1| two component LuxR family transcriptional regulator [Brucella
           neotomae 5K33]
 gi|261304435|gb|EEY07932.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737567|gb|EEY25563.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741448|gb|EEY29374.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744101|gb|EEY32027.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262551993|gb|EEZ07983.1| two component LuxR family transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|262765420|gb|EEZ11209.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001263|gb|EEZ13838.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094966|gb|EEZ18674.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660259|gb|EEZ30520.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294820316|gb|EFG37315.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|306274610|gb|EFM56399.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO1]
 gi|306287481|gb|EFM58951.1| Bacterial regulatory protein, LuxR family [Brucella sp. BO2]
 gi|326408384|gb|ADZ65449.1| LuxR family two component transcriptional regulator [Brucella
           melitensis M28]
 gi|326538098|gb|ADZ86313.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 26/234 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E + R   V + P   D L  ++     +             GA+    V  ++   
Sbjct: 1   MTNECKIRVLLVDNHPLVLDGLRAVLETYDDIDIA----------GAASNARVALEMALA 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D ++       L+  +   E  K    L     L   +  +     T      + Y 
Sbjct: 51  VNPDVVLMDINMP-LLNGIDAIELFKR--QLPNVRILMLSMHDSREYISTSIMRGASGYI 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G          +              +    +   L+ RE 
Sbjct: 108 LKDVSTNEIVTAIHAVASGGTYFSSGVSEAL-------------LESGEKRSEGLSAREN 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 155 DVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 232

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +        + E   G     L R        +D  +     
Sbjct: 12  RLIVVDDHDLIRAGFRLVLEQEPDFEVVGEASSGREAIELCRRLRPDVVVMDLAMPGVDG 71

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +             +   L           +         Y   +  + R+   
Sbjct: 72  LEATRRIKEEH--------PQVAVLVVTALEDPEYMLEALKAGAAGYVLKSSPLPRVISA 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  L      + ++    +                +     ELT RE E L  ++ G+T+
Sbjct: 124 LRRLLSGESPLNQELAARL----IQDLARRPGGGGNPPPAEELTAREREVLVLMARGRTN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ISR T  +++ +I+RK     R+ A+A A    ++
Sbjct: 180 PEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARAFELGLI 222


>gi|297155349|gb|ADI05061.1| two-component system regulator [Streptomyces bingchenggensis BCW-1]
          Length = 237

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 67/244 (27%), Gaps = 24/244 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  +  +++          +S L      L+ +     +                +   
Sbjct: 2   VEGAETTLLIADAHPWTRLGLSALLNAVPGLSVVAQAADSE---------------TACA 46

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D+        + ++ +  ++ +                     +    
Sbjct: 47  LAESAEPDIVIIDTDFPDLGGAETIQRILEADPEN--PPTALLVTSTV----DDNDIYAA 100

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                           ++   +        +     +  +  +  +        +    +
Sbjct: 101 LHAGARGILLKNIPPEQMTAAVTAAARGNMVFSPGVMSRLVDICTH---RTTPVEYDGSR 157

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  +++G  +  +A IL IS  TV  ++   M K    +R+ A+A +  
Sbjct: 158 LATLTMREAEVLKLVAKGYGNSTVAKILHISEATVKTHLNRAMGKLEISSRAQAVALSYE 217

Query: 243 NNIV 246
             +V
Sbjct: 218 FGLV 221


>gi|294788302|ref|ZP_06753545.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
 gi|294483733|gb|EFG31417.1| nitrate/nitrite response regulator protein NarL [Simonsiella
           muelleri ATCC 29453]
          Length = 220

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 28/238 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q++ IVL  +     S +  L +R      +                    G S   LV 
Sbjct: 3   QKIRIVLIDDHNLFRSGIKALLSRQADFDIVGEAAD---------------GLSGVKLVE 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +     ++          +   V     +       
Sbjct: 48  QTKPDIVLLDLDMPVMNGREALAQILSVRSEQN--------VVMLTVSEDSEDLTECMRF 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +     +   +   +        +   +    +        N              
Sbjct: 100 GARGFLLKNINADFLVDSIKRAVDGDNVFSPEMTARLVQSLIRPHN--AGTGSALD---T 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE+E L  ++ G ++  IA  L ++  T+  ++ +I+RK    +R  A  YAV++
Sbjct: 155 LTPRELEILGHLAAGHSNKIIARQLDLAEFTIKVHVQNILRKLELSSRVQAAVYAVQH 212


>gi|300022129|ref|YP_003754740.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523950|gb|ADJ22419.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 223

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 68/232 (29%), Gaps = 29/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       V  + ++      +                    G     L    
Sbjct: 2   IKVVLIDDHPLFRKGVRQMISQDPNFRVVGEA---------------ACGQQGIELALAL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D +R +  +              +   V ++  + I       
Sbjct: 47  NPDIVLIDINMKGMTGIDTLRHLKATHL--------LARYIILTVSNSEDDLIEALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   +   L+       ++       +       + +          +  LT
Sbjct: 99  DGYLLKDMEPEDLCTNLLKASSGATVLQDTLAEVLK------SALLSPVSAGSSGEELLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E L  ++EG  +  IA  LGIS  TV  ++ +++RK    +R  A  +
Sbjct: 153 PREREILECLAEGLNNKTIARKLGISDATVKVHVKNVLRKLNLASRLEAAVW 204


>gi|225163774|ref|ZP_03726073.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224801604|gb|EEG19901.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 227

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 39/241 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q +++++  + +     ++ L   +  +  +                        F LV
Sbjct: 1   MQPISVIIVDDHQLMLEGIASLLRATPDITLVAKAQSAKE---------------AFELV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +         D  +      DL++ +  +              +   +  T        +
Sbjct: 46  KQHNPDIVVADLSMPGVTGLDLIQQIKDAGL--------LTRIIMLTMHRTRLTVHEAFS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N +   +     +   +  +      +    L       A                 
Sbjct: 98  VGANAFVLKSDAFEDLVDIIHRVHEGENTLTSKGLPPYEPACAA---------------- 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L  IS G ++ EI+  L IS  TV  + + IM+K      +  +  A+R+ 
Sbjct: 142 TLSPREKDVLEGISAGLSNKEISRRLAISSKTVETHRSRIMQKLNVTKATELVREAMRSG 201

Query: 245 I 245
           +
Sbjct: 202 L 202


>gi|17545011|ref|NP_518413.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|207727731|ref|YP_002256125.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|17427301|emb|CAD13820.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|206590972|emb|CAQ56584.1| response regulator protein [Ralstonia solanacearum MolK2]
          Length = 210

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++   T              
Sbjct: 2   IRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRTGT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++ +           L        P        I       
Sbjct: 48  -FDVVVLDISMPDRNGIDTLKLVRQRH-----PDLPVLILSTFP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +        +              L+
Sbjct: 99  SGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQ--------TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G++   IA  L +S  TV+ Y   I+ K   K+ +    YA++N +V
Sbjct: 151 KREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209


>gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 216

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 30/243 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   ++++ + +  + E   + +     R D +  +           R+ AL        
Sbjct: 1   MVAAMEKIRVFVLDDHEIVRNGLRQTLARHDDIEVVGEAGLAAEALRRIPAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      D+ R +  +  D    +L          +       
Sbjct: 53  -------HPHVAVLDGRLPDGSGIDVCREVRSALPDVACLIL--------TSYDDDEALF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +        Y         +   +  +     ++                   +      
Sbjct: 98  SAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRR-------VLERLRDGPSED 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y 
Sbjct: 151 PAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYL 210

Query: 241 VRN 243
           ++ 
Sbjct: 211 MKQ 213


>gi|125718640|ref|YP_001035773.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323350296|ref|ZP_08085961.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498557|gb|ABN45223.1| Two-component response transcriptional regulator (CheY-like
           receiver and HTH DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322123481|gb|EFX95152.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991776|gb|EGC23708.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|325697714|gb|EGD39599.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327467206|gb|EGF12710.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 210

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G                +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQEDIAEVSEAVNGKEGVEKALASRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|298241311|ref|ZP_06965118.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554365|gb|EFH88229.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 214

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       +   +     M  + E   G     L          +D  +     
Sbjct: 5   RLLIADDHAFYREGVRTMLRDLPDMEVIGEAASGNETESLAEALQPDVILMDIKMPGING 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  +              L   +F                Y     D   +   
Sbjct: 65  IEATRRILHTS--------PHMKVLVVTMFEDDDSVFAAMRAGARGYLLKDADQDELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     I        +     +  +             +LT RE E L  I++G+++
Sbjct: 117 VKAVSRGEAIFSPAIAQRM----IHYFSALPQTASAIA-FPDLTEREREILLLIAQGESN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA    +S  TV N++++I  K     R+ AI  A    +
Sbjct: 172 AAIAKHFTLSLKTVQNHVSNIFSKLQVADRAQAIVRARDAGL 213


>gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 223

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 70/244 (28%), Gaps = 28/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              ++V +V+  + +     +  L      +  +                    G     
Sbjct: 1   MSGERVRVVVADDHDLFREGLRQLLETVPSVEIVGEAAD---------------GQQAIE 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LV         +D  +           +             R   +   ++      I  
Sbjct: 46  LVANLDPDVVLMDINMPRMDGIRATEFIVKH--------YPRTAVVVLTMYQDDEYAIHA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   + +    G  I       +      +     +       
Sbjct: 98  IRAGAKSYLLKNSRSEEVIEAIHVAASGGSTIDPALAPAL----MREYQRLLT-KTPTNT 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE+  L  ++ G  + +IA  L ++ +TV N ++++ +K   + R+ A+ +A+ 
Sbjct: 153 RQQLTQRELTLLRLLANGYNNRQIAEQLQLAESTVKNNLSALFQKIGVRDRTQAVLFAIS 212

Query: 243 NNIV 246
             +V
Sbjct: 213 QGLV 216


>gi|229818737|ref|YP_002880263.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564650|gb|ACQ78501.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 224

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 72/241 (29%), Gaps = 23/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +QV + +  ++    + ++ +      L  +            +                
Sbjct: 3   EQVRVAVVDDEPLVRAGLAAIVDAEPDLGVVGEAGDGADVRDLVAR-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                  + D ++       L    A +   +  +  +         F      +     
Sbjct: 49  ------TRPDVVLMDVRMPALDGIAATAALTRDADAPRVLVVTT---FENDDYVLDALRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +        RI   + ++     ++  + +  +   +   A    +   H      
Sbjct: 100 GASGFLLKRAHPDRIVEAIRVVARGDAVLFPEAVRRLVAASPAGATPSPADGPHGAAIGR 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G T+ EIA  L +   TV  ++ +++ K   + R  A   A  +  
Sbjct: 160 LTEREEEVLRLVAAGMTNAEIAAQLWLGVETVKTHVGNVLAKLGARDRLQAAIVAYESGF 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|271962774|ref|YP_003336970.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505949|gb|ACZ84227.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +     S V       D +  +   +   S    +  L            
Sbjct: 1   MSTIRVLIVDDHRLFRSGVRAEL--GDSIEVVGEAEDVESAVRTIAEL------------ 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +++R +  S              L   V     + I    
Sbjct: 47  ---QPDVVLLDVHMPGGGGQEVLRRVLGSGSS--------VRFLALSVSDAAEDVIGVIR 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G    Y + T     +   +  +     +        +  L A+ ++     D       
Sbjct: 96  GGARGYVTKTISGRELTDAIRRVADGDAVFSPRLAGFV--LDAFASSEAPPIDPELDS-- 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV  +++S++RK     R     +A    
Sbjct: 152 -LTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARR 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes]
          Length = 236

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 11/221 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +                   VG  H  +V  +  ++ K + I    +P + V     +  
Sbjct: 15  LENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFIHVG-YPTEWVNFYIENNY 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRYCSLTFDVARIRIGLM 145
                ++++   +  P F     NI              G+            R+   + 
Sbjct: 74  IVSDPIIKKSRFMSHPYFWHEIRNINKSEKKIIRDVSEFGIKKGLTIPVHTHDRLIYAIC 133

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             F    +     L+   L   + A   K  +        LT RE ECL W ++GK+S E
Sbjct: 134 FAFTDKNVDQEIELYLRALSNFFIAGYKKLDEPTDMSPPILTPREKECLRWTAKGKSSWE 193

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +I+G+S  TVN +I + + K     R   +  A+   ++
Sbjct: 194 TGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234


>gi|94499636|ref|ZP_01306173.1| response regulator GacA [Oceanobacter sp. RED65]
 gi|94428390|gb|EAT13363.1| response regulator GacA [Oceanobacter sp. RED65]
          Length = 215

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +  L   S+ +  +                    G   F +V+  
Sbjct: 2   IRVLVVDDHDLVRMGIVSLLQGSENIEVIAEASS---------------GEEAFEMVKQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +    +     D           +        P          
Sbjct: 47  DPEVVLMDIRMPGMGGLEATHKLLRHNPD--------LKVVVVTACGEDPYASRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +R  ++ +    R I  +   ++ L                     L+
Sbjct: 99  AGYMTKGASAEEMRRAILKVKSGQRYISPEIAQKMAL-------KPFESQEAACPFDSLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+      EI+  L +S  TVN Y   I  K    +       A+R  IV
Sbjct: 152 DREMQISIMIANCAKVQEISDQLFLSPKTVNTYRYRIFEKLDISSDVELTRLAIRFGIV 210


>gi|300789707|ref|YP_003769998.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799221|gb|ADJ49596.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 221

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 26/237 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +    D +  +                    G          
Sbjct: 2   IRVLLVDDQRLVRAGFRSILDGEDDITVVAEAAD---------------GREALQAAHDH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +A +        +     +    F    +         
Sbjct: 47  HPDVVLMDIRMPE------LDGLAATRHLLEDPGV-STRVVILTTFDLDEDVYGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   + ++     ++       +    A +     +          LT
Sbjct: 100 SGFLVKDTEPEELIHAVRVVARGDALLAPSITRRLIAEFAARGTRPAASPALD----RLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E L+ ++ G ++DEIA  L +S  T   +++ IM KT T  R+  +  A  + 
Sbjct: 156 DREREVLSLVAAGLSNDEIARELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESG 212


>gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V++++  +       V+          R      +      +             + R  
Sbjct: 6   VSVMVVDDHPMWRDGVARDLQERGFEVR----ATSGDAVSALR------------IARTV 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           +     L         + +       
Sbjct: 50  KPDVVLMDLNLGDTSGVEASRQITQE--------IPGTRVLVLSASGEHSDVLEAVKAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   +  V  +   +        +        +  L   +            +  +LT
Sbjct: 102 SGYLVKSASVDELVDAVQRTAAGDAVF----TAGLAGLVLGEYRRMAVTPDSGDRAPQLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  +++G T+ +IA  L IS  TV N++ S +RK     R     YA+ + +
Sbjct: 158 DRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 215


>gi|302524105|ref|ZP_07276447.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433000|gb|EFL04816.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 222

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 76/243 (31%), Gaps = 25/243 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + + V + L  +     + V            +  +   V       ++ E         
Sbjct: 5   QREPVKVFLVDDHALFRAGVR---------TELDSITDEVQVVGEAGSVAEA-----VAG 50

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  +      +++R +           L     L   V     + I   
Sbjct: 51  IARTRPQVVLLDVHMPDGGGAEVLRRVR--------PELPDVVFLALSVSDAAEDVIAVI 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y + T     +   ++ +     +         G +    A+   S  ++  + 
Sbjct: 103 RAGARGYVTKTISSKELVRAVVRVADGDAVFSP---RLAGFVLDAFADRPGSAPINDPEL 159

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A   
Sbjct: 160 DLLTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDR 219

Query: 244 NIV 246
            +V
Sbjct: 220 RLV 222


>gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 26/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  + +     +  +  R D    +            +                
Sbjct: 4   EPIRLLLVDDQDLVRVGLRRILRRRDGFEVVGECADGDEVPAAVAE-------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +          VL          F            
Sbjct: 50  -SRPDVVLMDLRMKRVSGMEATRRLGER--TDAPPVL------VLTTFRDDDLLSAALRA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +         +   + L+     ++       +            +          
Sbjct: 101 GVAGFVLKDSPAEELIRAVRLVAAGEAVLDPAVTGRVLQTYRAARQPATTRAGAVDP--- 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REV+ L  +  G ++D+IA  L IS  TV ++I SI  K   + R+ AI +A  N +
Sbjct: 158 LTAREVDVLGLVGRGLSNDDIAAELVISIVTVKSHIGSIFTKLGVRNRAEAIVWAFDNGV 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|5051409|emb|CAB44989.1| NarL protein [Pseudomonas stutzeri]
          Length = 218

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 28/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I+L  +       +  L    D L  +                    G     L    
Sbjct: 7   TRILLVDDHPMMRRGLRDLLDLEDDLEMVGEAGN---------------GEDAIRLALQI 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  ++ D           +   V       +       
Sbjct: 52  EPDLILMDLNMPGIDGLETTRRMRDADID--------ARIIMFTVSDEQSHVLEALRNGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D  ++   + +       +  +    +           +       +   LT
Sbjct: 104 DGYLLKDMDAEQLIEQIRIAATGRMALSPELTQVLAEAI-----RVRPKPSGQVQFSHLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  I++G+++  IA  LGI+  TV  ++ +++ K   ++R  A  + + N
Sbjct: 159 KREKEVLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWVLEN 214


>gi|70725661|ref|YP_252575.1| hypothetical protein SH0660 [Staphylococcus haemolyticus JCSC1435]
 gi|123748665|sp|Q4L8Q6|NREC_STAHJ RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|68446385|dbj|BAE03969.1| nreC [Staphylococcus haemolyticus JCSC1435]
          Length = 217

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    + +  +           ++                  
Sbjct: 1   MKIVIADDHAVVRTGFSMILNFQEDMEVVATAADGGEAYQKVME---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D ++           +  +   K          L   ++              
Sbjct: 45  ----HKPDVLIMDLSMPPGESGLIATS--KISESFPETKILILTMYDDEEYLFHVLRNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++ + +  ++     +  D      L+  +  +              L+
Sbjct: 99  KGYILKNAPDEQLLLAVRTVYKGETYV--DMKLTTSLVNEFVNHKHSDDVSTNDPFKILS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 157 KRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLDLKSKPELVEYALKKKLL 215


>gi|88800064|ref|ZP_01115634.1| DNA-binding response regulator GacA [Reinekea sp. MED297]
 gi|88777190|gb|EAR08395.1| DNA-binding response regulator GacA [Reinekea sp. MED297]
          Length = 214

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  + +     +  L +  + +  +   D                G     L +  
Sbjct: 2   VEIIVIDDHDLVRFGLVRLLSDVEGIRVVAEGDS---------------GEKAVELAKKF 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +           L     +        P          
Sbjct: 47  EPDVMLMDVRMPGMDGIEATKKIQR--------FLPDVKIIAVTACGEDPFPSRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    + +  +   ++ L           +D       +L+
Sbjct: 99  SGYLTKDASTDEMVQAIKTVMAGQKYLTPEIAQKLALT---------RFDGSDNPFSDLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++  T I   K   EI+  L +S  TVN Y   +  K +  +       A+R+ ++
Sbjct: 150 DREMQIATMICSCKKVQEISDKLCLSPKTVNTYRYRVFEKLSVSSDVELTHLAIRHGLL 208


>gi|297562938|ref|YP_003681912.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847386|gb|ADH69406.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 231

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 14/228 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     +   +     +    E   GA        D      +D  +     
Sbjct: 3   RVGLADDQVLFTAGMAMVIDSQPDLTVAWEAGDGAQALARQHSDPVDVLLMDVQMPGTDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  S              +    F T    +         +         +   
Sbjct: 63  LSATRSLVSSG--------ADCRVVILTTFDTDEYVVEGVEAGAAGFLLKNTPPEELLEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWIS 198
           +  +     +I       +            S  V    D       LT RE E L  ++
Sbjct: 115 VRTVHRGDSVISASSTRRLLGHVRPLLGGPSSRPVPIDGDTRRAVASLTPREQEVLVAVA 174

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G T+ EI   L +S  TV  ++  ++ KT ++ R  A+ +A R  +V
Sbjct: 175 LGYTNTEICERLVLSMPTVKTHVGHVLAKTGSRDRVQAVLFAFRAGLV 222


>gi|68249325|ref|YP_248437.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|145628395|ref|ZP_01784196.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145638479|ref|ZP_01794089.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|68057524|gb|AAX87777.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           86-028NP]
 gi|144980170|gb|EDJ89829.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           22.1-21]
 gi|145272808|gb|EDK12715.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           PittII]
 gi|309751610|gb|ADO81594.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2866]
 gi|309973777|gb|ADO96978.1| nitrate/nitrite response regulator protein [Haemophilus influenzae
           R2846]
          Length = 208

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 24/225 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D+ +   +   P     + +++ LD        + +     G     +          L
Sbjct: 2   QDKLKVLLIDDHPLMRRGIKQLVELDDNFEVVADVSS-----GTEGISVALQTSPDVIIL 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D ++ +     D           L   V     +  T      + Y    
Sbjct: 57  DLNMKGLSGLDTLKGLRAEGVD--------ARILILTVSDAKNDIYTLIDAGADGYLLKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   +   +  +     I+                N+             LT RE+  L
Sbjct: 109 TEPDTLLDQIKRIAQGEVILSDS-----------IKNLLLERTHEDNPLDSLTDREMGVL 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             I+ G ++ +IA  L IS  TV  +I +++RK    +R  A   
Sbjct: 158 RQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVL 202


>gi|225025240|ref|ZP_03714432.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC
           23834]
 gi|224941998|gb|EEG23207.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC
           23834]
          Length = 215

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 63/238 (26%), Gaps = 33/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S L  +      +                    G     L R+ 
Sbjct: 6   IRILLVDDHPLFRRGLSFLLAQEYGFEIVAEATD---------------GLEGVKLARFH 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  M   +             L   +               
Sbjct: 51  RPDLVLLDVEMPVMNGPEALAQMLDFQ--------PGLPVLMLTISEDADNLKKCLELGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +       + +  +       +          +         LT
Sbjct: 103 RGYILKNADTDFLVEAIRQAVAGQQTVSPEMNNAGQSI-------PPEHSAILDS---LT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L +++ G ++  IA  + +S NTV  ++ +I RK     R  A  YA    +
Sbjct: 153 QRERDVLRYVAGGISNKMIARRMFLSENTVKAHMQNIFRKLNIDNRVRAAVYARELGL 210


>gi|29832624|ref|NP_827258.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609744|dbj|BAC73793.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 215

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 55/213 (25%), Gaps = 9/213 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +D    W   +       G                 +    D +V               
Sbjct: 3   VDDHPMWRDAVARDLAESGFDVVATAGDGEQAVRRARAAAPDVLVLDLNLPAKPGVQVCK 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E       L+              + +         Y   +     +   +        +
Sbjct: 63  ELVGANPALRVL---VLSASGEHADVLEAVKSGATGYLLKSASTEELTDAVRRTAVGDPV 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                   +       A+           +  +LT RE E L  +++G +  +IA  L I
Sbjct: 120 FTPGLAGLVLGEYRRLASEPAPATGAGEPRAPQLTDRETEVLRLVAKGLSYKQIAERLVI 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ + + K     R   + YA+   +
Sbjct: 180 SHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 212

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   ++    +    E   G     L R        +D  +     
Sbjct: 8   RLLICDDHPVVRAGLRGMLAGEQDLEVAGEAANGREAVELARSLRPDLVLMDLRMPEMDG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L +   L    + +  + +       + Y         +   
Sbjct: 68  VAATERILAE--------LSQTRVLVLTTYDSDADILRAVEAGASGYLLKDAPREELFAA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +       +               V    +  L+GRE+E L  +++G ++
Sbjct: 120 IRAAMAGESPLDPAVASRLM------------RRVRTPPENALSGREIEVLDLVAQGASN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++  I  K     R+ A+  A++  I+
Sbjct: 168 REIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGII 210


>gi|319942139|ref|ZP_08016457.1| two-component system response regulator NarL [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804349|gb|EFW01233.1| two-component system response regulator NarL [Sutterella
           wadsworthensis 3_1_45B]
          Length = 226

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q  +++  +       V  L +    +  +               L+           
Sbjct: 10  VEQHTVLVVDDHPLFRRGVCELFSLDPTIRVVGEAGTREEALDLAEKLS----------- 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +++     +   +     +        V  +  +  +   
Sbjct: 59  ----PDLIVLDLNMKGSSGVEIL-----TTLKERDPSQRVV---ILTVSDSGEDFFSCIR 106

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +  ++   +         +    +        Y  ++ +       +  
Sbjct: 107 AGADGYFLKDMEPEKVLYCVRESLEGRLTVDPAMVR-------YLTDLLRGKAPKVEETV 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE + L+ I+ G T+  I   L IS  TV  ++  +++K    +R  A  +A   
Sbjct: 160 SLTDREEDVLSCIARGMTNKMIGRELKISDGTVKGHVKHLLKKLGFNSRVEAAVWAAER 218


>gi|152994713|ref|YP_001339548.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150835637|gb|ABR69613.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 213

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       D L   + L+  +         T   G       +        +D  
Sbjct: 8   LRVLLVDDHTLVLDGLQARLELEGNIDII-----ATASNGLEALEKAKELQPDLVLMDVS 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  +     +       ++          +     ++      N Y       
Sbjct: 63  MPILNGLEATKRFKAEQ-----PNVKILMLSM---HNDKEYILSLIQSGANGYVLKDVSS 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G                  ++   S      +  +LT REV  L  +
Sbjct: 115 EELVQAINTVCQGGTYFSSGA-----------SDSLFSLAASPKQSDDLTKREVAVLKAL 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA +L IS  TV  +  ++  K    T +G I YA+ N ++
Sbjct: 164 AAGLSNKEIAQLLNISVRTVETHRQNLKNKLDIHTSAGLIKYALANQLI 212


>gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
 gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter
           sp. NAS-14.1]
          Length = 269

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 21/255 (8%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++ L R  E R   +S     S+  +        +     +  L+   G  +       +
Sbjct: 17  SLHLVRSIEIRYRSMS----LSEDFSSRAKSTPELDLETTLNDLSTLYGLKNITYFSASI 72

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----------PE 118
                 + I+ + +    V      +      VL   +    PV                
Sbjct: 73  PYANDDEHILITTYSTTWVEHYFSLKYQDVDPVLHAGSRSLLPVDWGHLSTTGETSRNFF 132

Query: 119 NITPPAG-MDNRYCSLTFDVARIRIGLML----LFPKGRIILRDRLWEIGLLAAYQANMF 173
                 G  +         +      + L          +  R+ + +    A    +  
Sbjct: 133 GEAKEYGIGETGLTIPVRGMLGEEAMISLNSDLRARDWELFCREMISDFTYFAHLLHDSV 192

Query: 174 --KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                  H     +LT RE + L W + GKT+ E  +ILG++  TV+ Y+ +   K    
Sbjct: 193 TRSRIHQHETDHPQLTKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVA 252

Query: 232 TRSGAIAYAVRNNIV 246
           T++ A+A+AV+  ++
Sbjct: 253 TKTQAVAFAVKERLI 267


>gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 229

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
           A+++ +D        + A  E VG     +        Q L      +V +D     V  
Sbjct: 3   AQLLLVDDEPGIRESVPAYLEEVGGFTVDVASNANDAWQMLQQKTPDLVITDIMMPQVDG 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               +K +     +    +F        + I       + Y S  FD   +   +  L  
Sbjct: 63  YQFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKPFDTDELVAIVENLLE 122

Query: 150 KGRIILRDRLW---------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           +     ++            E+  +    A              + T RE   L  +++G
Sbjct: 123 RRATTAQETAGTADLGNIEKELTAIREMLAQRGNISQTPPPIRIDFTPREQSVLDLVAQG 182

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 183 LMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 227


>gi|259048250|ref|ZP_05738651.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035099|gb|EEW36354.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 216

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D +     L   +  +  +  L     G + F            +D  +     
Sbjct: 6   RLIIADDEMLIRTGLKIMLEASGNVEVLALAENGRAAFEACTIHRPDVVLMDIRMPESNG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + +                 L    F      +       + Y         I  G
Sbjct: 66  IEGTKLIKE--------AFPEVKVLIVTTFQDTEYIVEAVQNGASGYLLKDSSPDAILDG 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++       +           +  +    + + LT REVE +  +++G ++
Sbjct: 118 IKVALSGKVVMDTVISEALLT-----NTSVEKEESFDAEKWGLTTREVELIAQVAKGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV N I++I+ K   + R+  + +A  N +
Sbjct: 173 KEIAQTLFLSEGTVKNNISTILSKLELRDRTQLVIFAYENKL 214


>gi|239930061|ref|ZP_04687014.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438397|ref|ZP_06577787.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341292|gb|EFE68248.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 227

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 9/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     M  + E   GA+   L          +D  +      
Sbjct: 5   VLVVDDQGIVRAGFAAVIDAEEDMTVVGEAGDGAAAVRLAEELAPDVVVMDVRMPELDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +   E          P  L    F              + +       A +  G+
Sbjct: 65  AATRIITGRE--------DAPRVLVLTTFDLDAYVFEALRAGASGFLLKDVHAAELLHGI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +    A  A           +   LT RE   L  ++ G T+ 
Sbjct: 117 RVVAAGESVLAPSATRRLIGHYASGAVTGIGGGSTPRELDGLTARERSVLALVASGLTNA 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   LGI+  TV +++ +++RK   + R  A   A    +
Sbjct: 177 EIGGQLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLGL 217


>gi|148981530|ref|ZP_01816447.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145960831|gb|EDK26164.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 212

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 18/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S V  +    D    +      +     +  +     G     +V+        +D  +
Sbjct: 1   MSEVIRVVIADDHQVVLDGFMARLELEPDISVIGTASNGLEAVEMVKTLRPDVVLMDISM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D    +             +   L   + +     +         Y        
Sbjct: 61  PIMNGIDATHLIKEEN--------PQAKVLMLTMHNNREYIMKVMQSGAVGYMLKEISAE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   +  +              +           +           L+ RE   L  ++
Sbjct: 113 KMVQAIKTVNQGSTYFCEKVTQNL---------FTQPITPSPSVKNPLSRREEAVLKLVA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G++S E+A  L IS  TV  +  +I  K    + +    YAV   +V
Sbjct: 164 KGESSKEVAKALNISYRTVETHRQNIKHKLDIHSTAELAKYAVNCGLV 211


>gi|114320166|ref|YP_741849.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226560|gb|ABI56359.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 219

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 73/230 (31%), Gaps = 18/230 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D +R   V   P     L +++  +  +       +     G     L+         L
Sbjct: 5   ADAKRIFLVDDHPLLRRGLGQLLEAEPDLELAGEAGS-----GEQAMALLPGSGADLVLL 59

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +        +  +  S          +   +   V +   +         + Y    
Sbjct: 60  DLNMRGMGGVRTLEAIRASGM--------KLRVVVLTVSNAAEDVHAALQAGADGYLLKD 111

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   +   L        +I  +    +  +     +             ELT RE E L
Sbjct: 112 MEPEALVAELRRAAGGELVISPELASVLAQVLTRPNH-----SAADELLAELTSRESEIL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             I++G+++  IA  LG+   TV  ++ SI++K    +R  A  +AV++ 
Sbjct: 167 RHIAKGQSNKMIARDLGLMEGTVKVHVKSILKKLRMHSRVEAAVWAVQHG 216


>gi|295838502|ref|ZP_06825435.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197699551|gb|EDY46484.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 234

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 30/243 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLP--TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           V ++L  +     + V           +  +       +    +  L             
Sbjct: 18  VRVLLVDDHRMFRAGVRAEIDHPGEHGVTVVGEAADAEAAVRSVREL------------- 64

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +     LD  +       +++  A    D    V      L   V     + I     
Sbjct: 65  --MPDVVLLDVHLPGGGGLSVLQRCAELVMDVEKPV----RFLALSVSDAAEDVIGVIRA 118

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKD 183
               Y +   +   +   +  +     +           LA +  + F   +      + 
Sbjct: 119 GSRGYVTKAINGTELVAAIHRVKEGDAVFSPR-------LAGFVLDAFSNNTVPPVDEEL 171

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I+ G +  EIA  L IS  TV +++++++RK     R     +A   
Sbjct: 172 DKLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAAR 231

Query: 244 NIV 246
            +V
Sbjct: 232 RLV 234


>gi|262275905|ref|ZP_06053714.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP
           101886]
 gi|262219713|gb|EEY71029.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP
           101886]
          Length = 209

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +       +S L       + +  +                 G         + 
Sbjct: 5   NVLLVDDHPLMRKGLSQLLKYEPEFSFLTEVSN---------------GTDAIAEASRNE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +          V+   T    P      +         +
Sbjct: 50  PDLIILDLNMKGLSGLDTLKALRSDGCT---AVIVILTVSDSP-----SDIHAIVQAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   + + L       +                     +    H      LT 
Sbjct: 102 GYLLKDSEPEELVMQLKSAMTGEKAYSEQVRT-----------YLEKSRDHTSPLSVLTE 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  +++G  + +IA  L IS  TV  ++ ++++K   ++R  A    + +
Sbjct: 151 RERQILRLVAKGLRNKQIAETLYISEATVKVHLKNLLKKLGVESRVAATVLYLEH 205


>gi|302561087|ref|ZP_07313429.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302478705|gb|EFL41798.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 230

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 68/235 (28%), Gaps = 16/235 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R    R   V   P   D +AR    D + +    +    +  G       +       
Sbjct: 7   GRRGPIRVMVVDDHPMWRDAVAR----DLSEAGFEVVATAGD--GDQAVRRAKAAAPDVL 60

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  + +     + + +  +              L         + +         Y  
Sbjct: 61  VLDLNLPAKPGVQVCKEVVAAN--------PAVRVLVLSASGEHADVLEAVKSGATGYLL 112

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGRE 190
            +     ++  +        +        +       A+         G+     LT RE
Sbjct: 113 KSASTEDLQDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAGPAPGDGEPGAPRLTDRE 172

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 173 TEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 227


>gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium
           minutum Pei191]
 gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family
           [Elusimicrobium minutum Pei191]
          Length = 215

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 13/219 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D        + ++ E  G  +  +V      ++ LD  V +      V  +A+
Sbjct: 1   MIRILLADDHALVRDGIKSILERKG-KNISVVAEMGNGKEMLDYAVKNKNIDVYVVDIAM 59

Query: 93  SEKDKYYNVLQRPT------ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +    V +          +   ++                +         I   +  
Sbjct: 60  PILNGIAAVQKLLKINPDAKVIVLSMYDDRASVEKAFKAGARGFVVKVSSADEIIEAIKE 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      +       +                       LT +E + L  I+EG +S EI
Sbjct: 120 VSAGRFYLCSKVSKFV------VQGFLGKASPSKKDPSGLTPKEKQILQLIAEGFSSKEI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A   G+S NTV+ +  +IMRK     ++  + YA++  I
Sbjct: 174 AKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRYAIKEGI 212


>gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 216

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G                +D  +     
Sbjct: 3   RILLADDHALFRQGLRTLLEAEPEFRVIGEAGNGREALRTALATRPDVILMDIQMPELDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +                 +   ++                Y         +   
Sbjct: 63  VQATQEILRE--------FPEARVIMLTMYRQDAYVFEAVKAGARGYLLKDAQAEELIDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   +I      +     +         ELT REV+ L  +++G T+
Sbjct: 115 IRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAA-----ELTEREVQILRLLAQGATN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  LG+S  TV N ++ I  K     R+ A  YA+R  +
Sbjct: 170 QEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211


>gi|312884543|ref|ZP_07744247.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367855|gb|EFP95403.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 214

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      +          +                
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEAESGEDAVKWCRS---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +    A  +  +Y   ++    +   V    P          
Sbjct: 46  ----NHADVILMDMNMPGIGGLEATKKVLRYNPDVK---VIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   + ++    R I  +   ++ L         +          EL+
Sbjct: 99  SGYLTKGAGPDEMVNAIRMVHSGQRYISPEIAQQMAL--------SQFSSASENPFAELS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDISGDVELTHLAIRHGMI 209


>gi|269957384|ref|YP_003327173.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306065|gb|ACZ31615.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 234

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 61/243 (25%), Gaps = 24/243 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + +   +    +      +  +      V     + AL              
Sbjct: 9   PIRVALVDDQQMVRAGFRMVIDSQPDMTVVAEAGDGVEALRVLGAL-------------P 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +              P  +    F      +      
Sbjct: 56  VRADVVLMDVRMPRMDGLTATAALTS--------GADAPRVVVLTTFDIDEYVLEAIRSG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDVHWGKD 183
            + +         +   +  +     +I       +                        
Sbjct: 108 ASGFMLKDAPPEEMLGAIRTVHAGDAVIAPSSTRRLLEHLVTALPTPAPDTPPSPAHAAL 167

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++ G+++ EIA  L ++  TV  ++  I+ K   + R  A+  A   
Sbjct: 168 ATLTDREREVLELMARGRSNTEIAADLFVAEATVKTHVGRILAKLDARDRVQAVVLAYET 227

Query: 244 NIV 246
            +V
Sbjct: 228 GVV 230


>gi|62289334|ref|YP_221127.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699262|ref|YP_413836.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023586|ref|YP_001934354.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|237814824|ref|ZP_04593822.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|254696773|ref|ZP_05158601.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729682|ref|ZP_05188260.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 4
           str. 292]
 gi|260545913|ref|ZP_05821654.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260757346|ref|ZP_05869694.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761170|ref|ZP_05873513.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|62195466|gb|AAX73766.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615363|emb|CAJ10326.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|189019158|gb|ACD71880.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|237789661|gb|EEP63871.1| LuxR family DNA-binding response regulator [Brucella abortus str.
           2308 A]
 gi|260097320|gb|EEW81195.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260667664|gb|EEX54604.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671602|gb|EEX58423.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 213

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 26/234 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E + R   V + P   D L  ++     +             GA+    V  ++   
Sbjct: 1   MTNECKIRVLLVDNHPLVLDGLRAVLETYDDIDIA----------GAASNARVALEMALA 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D ++       L+  +   E  K    L     L   +  +     T      + Y 
Sbjct: 51  VNPDVVLMDINMP-LLNGIDAIELFKR--QLPNVCILMLSMHDSREYISTSIMRGASGYI 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G          +              +    K   L+ RE 
Sbjct: 108 LKDVSTNEIVTAIHAVASGGTYFSSGVSEAL-------------LESGEKKSEGLSAREN 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 155 DVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510]
          Length = 229

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ IVL  +D      ++   T  + +A +   D   +                 L+   
Sbjct: 15  QLTIVLVEDDPPTRDHLAETLTACNGIALLATADTLEAARAACERFL-----PTVLITDL 69

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L      D I      F     M +S      +V+                  T     
Sbjct: 70  QLPDGHGTDLIREVRDRFPATEIMVISVLGDEDSVV------------------TAIRAG 111

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     +   +   +  L      I          +A Y     +       K   L
Sbjct: 112 ASGYILKDSEPVDMVEAVRGLIEGRSPISAS-------IARYIIRRVQDGSFKDRKPAPL 164

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE + L  I++G T ++IA  LG+SR TV +YI +I RK    +RS A+  A+   +
Sbjct: 165 LTPRETDILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKL 224

Query: 246 V 246
           +
Sbjct: 225 I 225


>gi|312132068|ref|YP_003999408.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311908614|gb|ADQ19055.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 204

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 70/242 (28%), Gaps = 38/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +       +  +      +               +  +            
Sbjct: 1   MDKIKILVVDDHPMVLEGMRSMLAGIPFVTVTGLAQNAYQAIEHLKEIL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +    D  +      +L   +        Y  ++         ++          
Sbjct: 50  ----PEIVITDINMPEISGIELSSKIRKE-----YPNVKIIAMST---YNERSYVSQMVQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +     +   ++ +      +  +                        K  
Sbjct: 98  AGASGYLLKSASREEMEEAILTVSSGKLYMSLE---------------LDISREEIKKMP 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EG T+ +IA  L +S +TV+++  +++ K      +G I +A +N 
Sbjct: 143 VLTTREREVLVLIAEGLTNPQIAERLFVSPHTVDSHRKNLLTKFEVNNTAGLIKWAAKNG 202

Query: 245 IV 246
           ++
Sbjct: 203 LI 204


>gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074]
 gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074]
 gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074]
          Length = 219

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 67/232 (28%), Gaps = 20/232 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKL 74
           DE  T     L    D       L   +S    +  + E   G     L          +
Sbjct: 6   DEPPTPAPVRLLLCDDHAVVRAGLRALLSSAPGIEVVAEAGSGEEALALTALHHPDLVLM 65

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      + +  +  + +            L    + T  +           Y    
Sbjct: 66  DLQL-----GEGIGGVETTRRLTTLPDHPP-YVLVLTTYDTDADITRAVEAGATGYLLKA 119

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +         +          +A       +          ELT RE + L
Sbjct: 120 ERPEELFTAIRAAASGRTALSP-------PVAQRVMTHLR------NPQPELTPRERDIL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G  + EIA  L IS  TV  ++  I +K   +TR+GA+A      ++
Sbjct: 167 RHLTQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVAVGKERRLL 218


>gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 213

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+N+++  +       +  L  +   +  +      +     +               
Sbjct: 1   MNQINLLIADDHTMFLQGIISLLEQEPNITIIDKAVNGIEALEIIKK------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     LD  +      +L + +           ++            +        
Sbjct: 48  --GVVDFIILDISMPEMDGIELSKILKKQH-----PNVKILIVST---HSNVMIVSRLIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y         +   +  +         +       L     +     +       
Sbjct: 98  IGVNGYLLKNAAKEELLKAINTIASGENYFAEE-------LEEKHLSNSSKIEKQVSNLT 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE E L  I+    + EIA    IS NTVN +  +++ K   K  +G + YAV N 
Sbjct: 151 ELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAGLVKYAVENG 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|327472699|gb|EGF18126.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 210

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G         D      +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQDDIAEVSEAVNGKEGVEKALADRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSTEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|307711412|ref|ZP_07647828.1| response regulator [Streptococcus mitis SK321]
 gi|307616785|gb|EFN95969.1| response regulator [Streptococcus mitis SK321]
          Length = 210

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L         +  + E   G+    L          +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSYFDLQDDVEVVGEAANGSQGIDLALELRPDVIVMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +        +   +         +    + +         Y   T     +   +
Sbjct: 63  DATLAILKE-----WPEAKILIVSS---YLDNEKIMPVLNAGARGYMLKTSSADELLHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I ++   ++     +                +LT RE + L  I++G  + 
Sbjct: 115 RKVAAGELAIEQEVSKKVEYHRNHIELHE-----------DLTARERDVLQLIAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A  Y+ ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYSFQHHLV 205


>gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1]
 gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
 gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator
           [Pseudomonas aeruginosa 39016]
          Length = 234

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 15/219 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             L + M P+  +      +      +G  ++           +  + V   +P   +  
Sbjct: 5   DGLRSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLER 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIR 141
             +         +         V           +  N     G+             + 
Sbjct: 65  YQMQNYGAVDPAILNGLRSSEMVVWSDSLFDQSRMLWNEARDWGLCVGATLPIRAPNNL- 123

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLT 195
           + ++ +    + I      EI L       +         + +       L+ RE E L 
Sbjct: 124 LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQ 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           W ++GK+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 184 WTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 222


>gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 222

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 8/222 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           V     M  + E   GA    L    L     +D  +       
Sbjct: 2   LLADDQALLRSAFRVLVDSEDDMEVIGEASDGAEAVRLAASHLPDVVLMDIRMPGTDGLA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R ++          L     +    F      +         +     + + +   + 
Sbjct: 62  ATRHISA------DPALAAVHVVMLTTFEVDEYVVQSLRAGAAGFLGKGAEPSELLGAIR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSD 204
                  ++       +      QA            +   LTGRE E L  ++ G ++D
Sbjct: 116 TAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSARLAALTGREREVLVQVAAGLSND 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 176 EIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAYETGLV 217


>gi|229490673|ref|ZP_04384511.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229322493|gb|EEN88276.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 227

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 16/233 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQK 73
              ++   +    L R++ +D        + ++ E       VG +  L     +  +  
Sbjct: 5   RPVITRGASPVQGLVRIVLVDDHAILRQGLRSVLERESDLEIVGEASSLAEALAVVDKVG 64

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D ++             L+   +  +       L    F      +         Y   
Sbjct: 65  PDIVLMDLKLSASSDYEGLTLCGQLSSAHPGLGLLVLTTFLDDQLVVRAVHAGARGYVVK 124

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             D   +   +  +              +           +S +        LT RE+E 
Sbjct: 125 DVDTTELVRAIRAVSRGESAFDSRSASAV----------VRSLNGQSSSKERLTDRELEV 174

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ +I   L IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 175 LRLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 227


>gi|86148053|ref|ZP_01066355.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|85834186|gb|EAQ52342.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
          Length = 212

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S V  +    D    +      +     +  +     G     +V+        +D  +
Sbjct: 1   MSEVIRVVIADDHQVVLDGFMARLELEPDISVIGTASNGLEAVEMVKDLRPDVVLMDISM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D    +             +   L   + +     +         Y        
Sbjct: 61  PIMNGIDATHLIKEE-----DP---QAKVLMLTMHNNREYIMKVMQSGAVGYMLKEISAE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   +  +              +           +           L+ RE   L  ++
Sbjct: 113 KMVQAIKTVNQGSTYFCEKVTQNL---------FTQPITPTQSVKNPLSRREEAVLKLVA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G++S EIA  L IS  TV  +  +I  K    + +    YAV + +V
Sbjct: 164 KGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVSSGLV 211


>gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
 gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18]
          Length = 199

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 17/209 (8%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   +S    +  + E   G     L          +D ++      +  R +      
Sbjct: 5   GVSAYLSTQPDIEVVGEAENGRKGSELALQLRPDIILMDLVMDEMDGVEATRAIIQEW-- 62

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    F    +           Y   T   + I   +   +    ++  
Sbjct: 63  ------PEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYDGETVLEP 116

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++        +  +        + ELT RE E L  I+EGK++ EIA  L I+  T
Sbjct: 117 KVTGKM-------MSRMRQKKEQPLHE-ELTERESEILLLIAEGKSNQEIADELFIALKT 168

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  ++++I+ K     R+ A+ YA R+ +
Sbjct: 169 VKTHVSNILNKLNVSDRTQAVIYAFRHQL 197


>gi|229821191|ref|YP_002882717.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567104|gb|ACQ80955.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 230

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 59/223 (26%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D     + L   +     +  + E   G +     R        +D  +     
Sbjct: 11  RLLVADDQPTIRLGLRMILDNEPDLTVVAEADDGEAAVAAARELRPDVVLMDVRMPRVDG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     +    F                +         +   
Sbjct: 71  IQAAARLTA------DPELAGVRTIVLTTFDDDAYVYGALRAGAAGFLLKDVGPDALVDA 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +       A+              LT RE E L  ++ G ++
Sbjct: 125 VRRVHAGDSLLDPSVTRRVIERYVELAD-AAPVLPGAAAAARLTRREHEVLLAVARGSSN 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +S  TV +++ S++ K    +R   + +A    +V
Sbjct: 184 REIGAALDVSEATVKSHVRSLLAKLGLASRVQLVIFAYSEGLV 226


>gi|327462458|gb|EGF08783.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|332362992|gb|EGJ40781.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332364570|gb|EGJ42339.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
 gi|332366354|gb|EGJ44105.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 210

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +     +  ++E V G                +D ++      
Sbjct: 3   ILLVDDHQMVRLGLKSYLELQDDIAEVSEAVNGKEGVEQALASRPDVIIMDIVMPEMNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    +    +         + Y   T     I   +
Sbjct: 63  EATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAHGYMLKTSSAEEILRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 115 KKVAKGEFAIETEVSKKVEYHRNHIELHE-----------DLTARERDILGLLAKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|239989357|ref|ZP_04710021.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446370|ref|ZP_06585760.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349317|gb|EFE76221.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 229

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 67/246 (27%), Gaps = 28/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  + + V +++  ++    + V  +  R   +  +                    G   
Sbjct: 6   MTSDSRPVRVLVADDEALVRAGVRAILARDPQIEVVAEAAD---------------GREA 50

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LVR        LD  +        V  +                 +    F       
Sbjct: 51  IALVRQHRPDVVLLDIQMPGLDGLTAVARLHREPTP--------VGVIMLTTFGQDAYVT 102

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +     D   +  G+  +   G  +       +                  
Sbjct: 103 RALEEGADGFLLKADDPRELLNGVRAVGAGGAYLSPRVAGRVI-----AGMRAHRAAHPH 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LTGRE E L  I  G ++ EIA  L +   TV  ++++++ K   + R  A   A
Sbjct: 158 RPLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKAHVSAVLAKLGVRNRVEAAIAA 217

Query: 241 VRNNIV 246
               ++
Sbjct: 218 HEAGLL 223


>gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 226

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 12/223 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVRC 89
           A ++ +D        + A  E  G S          W+L Q+Q  D +  +D     V  
Sbjct: 3   AHLLLVDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQTPDLV-ITDIMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               ++ +      R   +F        + I       + Y +  FD   +   +  +  
Sbjct: 62  YQFLQQLRDDPRYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNILR 121

Query: 150 KGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +           +  LA+  A                     +LT RE   L  +++G  
Sbjct: 122 QRTNQQSSESTNLADLASQIAEIRSILTKQNALERNITPIKIDLTPREQSVLDLVAQGLM 181

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L  S   +  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 NKEIARHLNTSVRNIEKYVSRLFSKTGTNSRTELVRFALEHGL 224


>gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 214

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 72/238 (30%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  ++         L   +  L  +           ++  L               
Sbjct: 2   IKVAVFEDNAHLRESFRLLLQEAKGLECVATFSNANDAVEQLRNL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  +     Y  +    +    +F              
Sbjct: 47  DCHVILMDISMPGRSGVEATKLIKEA-----YPDINIVIQS---IFDDDEYIFKAICNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     + A     +  ++  G  +       +  L                +DF LT
Sbjct: 99  SGYLLKNAEPATYVKAIEEVYEGGSPMTPGIARRVLQLFREGY-----TPPTPKEDFNLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E + L ++  GK+   IA +L IS  TV  ++ +I  K    + + A+A A+++ I
Sbjct: 154 EQERKVLHYLVAGKSYKMIADVLFISLETVKTHLRNIYLKLQVHSGTEAVAKALKHKI 211


>gi|300782900|ref|YP_003763191.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792414|gb|ADJ42789.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 62/223 (27%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L    L     +D  +     
Sbjct: 3   RVLLADDQPLIRSGFRALLDVEDDIEVVAEAGDGGEAVRLALEHLPDIALVDVQMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +                +             
Sbjct: 63  IEATRRIAAH------PALAAVHVVILTNYGLDEYVFEALRAGAAGFLVKDIQPEDFLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++      ++  +  Y                ELT RE E ++ ++ G ++
Sbjct: 117 VRVAARGDALLAPSITRKL--IDRYVTQPLVPGAGLA----ELTNREREAVSLVARGLSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  + IS  T   ++   M K   + R+  + +A  + +V
Sbjct: 171 EEIAGRMVISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLV 213


>gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 218

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 77/238 (32%), Gaps = 22/238 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L  +       +  L  ++D L  +   +       ++  L                  
Sbjct: 1   MLVDDHSIVRDGIRLLLEQADGLEIIDEANDGEEVLDKLKVL---------------QPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              L  ++  D     +  +  ++      + +    L   + +     +         Y
Sbjct: 46  PSLLPDLILMDISLPGMSGIQTTQV--ISRLYKNVRVLMLSMHNNEDYILRSVEAGAYGY 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTG 188
                    +   +  +    +           ++ +      K  D      +  +L+ 
Sbjct: 104 ILKDSSSDEMIKAIRTIASGEKYYSS---PVASIILSGYMQQLKKGDRHGRAERQSKLSN 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E E L ++ +G +S EIA  L +S  TV+N+ A++MR+   +  +  +  AV + ++
Sbjct: 161 KEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQVRNAAELVRMAVEDKLI 218


>gi|84393114|ref|ZP_00991879.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84376271|gb|EAP93154.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 212

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +               ++ +      +     + +L               
Sbjct: 5   IRVVIADDHQVVLDGFMARLELEPDISVIGTASNGLEAVEVVKSL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D    +                 L   + +     +       
Sbjct: 50  RPDVVLMDISMPIMNGIDATHLIKEE-----DP---EAKVLMLTMHNNREYIMKVMQSGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +  +              +           +           L+
Sbjct: 102 VGYMLKEISAEKMVQAIKTVNQGSTYFCEKVTQNL---------FTQPITPTQSVKNPLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  +++G++S EIA  L IS  TV  +  +I  K    + +    YAV + +V
Sbjct: 153 RREEAVLKLVAKGESSKEIAKGLNISYRTVETHRQNIKHKLDIHSTAELAKYAVNSGLV 211


>gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 210

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 73/223 (32%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +  +  M  + E   G +   L+         LD  +     
Sbjct: 3   RVLLVDDQTLVRQGIRSLLELSPEMQVVGEAADGEAALGLIAETAPDVVLLDLRMPKLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             ++R +A             P  L    F      +         Y      + ++   
Sbjct: 63  LGVLRALA-----------HPPPTLILTTFDDDALVLDGLRAGAKGYLLKDVSLEQLVTA 111

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L   G ++       +        +              LTGRE E +  ++ G ++
Sbjct: 112 VRTLAAGGTLVQPAVTERV----LRGLSGVPRDYPSLETPDPLTGREREVVRLMAGGYSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA+ L IS+ TV N+++S++ K   + R+ A+  A+    V
Sbjct: 168 REIALALHISQGTVKNHVSSVLSKLGVRDRTRAVLKALELGYV 210


>gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
 gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           202]
          Length = 209

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 26/225 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     + +++ L+                G+    L          LD  +   
Sbjct: 9   LIDDHPLMRQGMRQILELETDFVVVGEASN-----GSDGVALALELNPDLIILDLNMKGI 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +R +   + D           +   V     + +       + Y     D A + 
Sbjct: 64  SGLDTLRALRAKDVD--------ARIVVLTVSDEQSDIVALMDAGVDGYLLKDSDTAELV 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                     +         LT RE + L WI+ G 
Sbjct: 116 ENIQKAARGETVLSDAVRK-----------HLLEHRPQADPLATLTDRERDVLQWIATGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA--YAVRNN 244
           ++ +IA  L IS  TV  +I +++RK    +R  A     A +  
Sbjct: 165 SNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLAQQKG 209


>gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 218

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 18/234 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++  +      V   P   D +AR    D   +       +                   
Sbjct: 1   MSEHESPTVMVVDDHPIWRDAVAR-DLSDDGFAVVATADGVA----------TAQRRAAI 49

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            K D +V      D     A +E  K     +              + +         Y 
Sbjct: 50  VKPDVVVMDMRLADGDGVQATTEVLKVSPATRVL---VLSASDEREDVLEAVKAGATGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +   A +   +        +        +  L   +                LT RE 
Sbjct: 107 VKSASKAELADAVRATAAGRAVFTPS----LAGLVLGEYRRIAQTADSSQDRPSLTERET 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 163 EILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216


>gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 18/232 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKL 74
           +E  T  V  L    D       L    S       L E   G +   LVR        +
Sbjct: 3   EEPATRRVITLALVDDHPVVRDGLRGMFSSAPGFEVLGEAADGVAAVELVRRVDPDVVLM 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +        +  +             R   L    + T  + +         Y    
Sbjct: 63  DLRMPGGGGVAAIAELTRLG--------ARSRVLVLTTYDTDSDTLPAIEAGATGYLLKD 114

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +        ++       +           +           L+ RE E L
Sbjct: 115 APREELFTAVRAAADGRTVLSPAVASRLIT---------RVRTPAAPGGEALSTREREVL 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G ++ EIA +L IS  TV  ++  +  K   K R+ A+A      I+
Sbjct: 166 ALVAKGTSNREIAAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGIL 217


>gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
 gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp.
           SKA58]
          Length = 248

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 17/237 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D  A    +    + +  M  +T+ +G  H+ LV   +  +  + S+   D+P D
Sbjct: 5   LGQVQDFCAVAGAIKDATALSDLMAEITKAMGFRHYALV-HHVDLKPAVRSVHIVDYPQD 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCS 132
            V             + +           +  +                  AG+ + +  
Sbjct: 64  WVERFQARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTV 123

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGR 189
                  +          G ++   +L  + L+ ++     +          E   LT R
Sbjct: 124 PAHIPGELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTER 183

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EC+  ++ GKT  EI+ ILGI + TV  ++     +     R+     A+    +
Sbjct: 184 QAECVALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 240


>gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 211

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 22/221 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   D L  +I L+             E +       ++        +D  + 
Sbjct: 6   VLIVDDNPAVLDGLKIIIELEN-FEVVSLCTNAKEAIEF-----LKMWHADVVLMDIRMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + +  +                 +    F          +   + Y   + D   
Sbjct: 60  VMDGIEGIFNIKTK--------FPNVKVIILTTFCEEDYIEKSLSFGADGYILKSSDAKH 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWIS 198
           I   ++ +     ++ ++       +A Y +++  ++      K   LT RE+E    IS
Sbjct: 112 IVNSILSVLDGKVVMDKE-------IALYISDVLKRTSKQLLEKTQNLTERELEIAKLIS 164

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +G ++ EIA +L IS  TV NYI SI++K   K R+    Y
Sbjct: 165 QGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|289425275|ref|ZP_06427052.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289154253|gb|EFD02941.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|313792254|gb|EFS40355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313838624|gb|EFS76338.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|315078129|gb|EFT50180.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|327453031|gb|EGE99685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 218

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q +      V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQGS-----TVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|195978655|ref|YP_002123899.1| TCS response regulator YvqC-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975360|gb|ACG62886.1| TCS response regulator YvqC-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 197

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 20/210 (9%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            L   ++    +  + E   G     L          +D ++      +    +      
Sbjct: 2   GLKSFLNLQQDVDVIGEASNGREGVELALELRPDVVVMDLVMPELGGVEATLEILSKW-- 59

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                 +    L    +    +           Y   T   A I   +  +      I  
Sbjct: 60  ------KEARVLVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVAKGELAIET 113

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +                K++D       ELT RE + L  +++G  +  IA  L IS  T
Sbjct: 114 E-----------VDKKIKAHDQQPDLHEELTAREYDILHLLAKGYDNQTIADELFISLKT 162

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++I+ K     R+ A+ YA R+++V
Sbjct: 163 VKTHVSNILAKLQVDDRTQAVVYAFRHHLV 192


>gi|170728075|ref|YP_001762101.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169813422|gb|ACA88006.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 206

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 24/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + L   + +D       +        G      +   +     +D  
Sbjct: 1   MRIFIVDDHPIFREGLIARLSMDDDFVIVGQA-----ANGKEALEKMPNLMPDIVLMDIS 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D                ++                ++        Y       
Sbjct: 56  MPEMNGMDAAEIFKDKF-----PEIKILILSM---HDDKEYVLSVLNRGVRGYALKDISA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L ++   G    R             +++         K+  LT RE   L  +
Sbjct: 108 AEMFYALRVIHNGGIYYSRA-----------ISDLLVQSSQEPDKNTVLTTREQTVLRLL 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G  + E+A  L IS  T+  +  +I  K A KT +G + YA+ + +
Sbjct: 157 ASGLNNKELARELDISVRTIETHRRNIKDKLAIKTSAGLVRYAIDHGL 204


>gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16]
 gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 218

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 72/238 (30%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G       +  
Sbjct: 3   IRILLIDDHTLFRSGIRALLQRQADFEIVDEAAD---------------GVEGIKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L R   +   V     E      G  
Sbjct: 48  RPDVILLDLNMPGLSGLEALQLLVED--------LPRTAVIVLTVSEEAEELAAALRGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +  G+        +I      ++    A              +   LT
Sbjct: 100 RGYLIKNIETEALIAGIRRAAAGEPVISDSMTAKL---VAQFRAPAPVAAARQDEAPRLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 157 AREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214


>gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 222

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G                +D  +     
Sbjct: 3   RILLADDHALFRQGLRTLLEAEPEFRVIGEAGNGREALRTALATRPDVILMDIQMPELDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +                 +   ++                Y         +   
Sbjct: 63  VQATQEILRE--------FPEARVIMLTMYRQDAYVFEAVKAGARGYLLKDAQAEELIDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +   +I      +     +         ELT REV+ L  +++G T+
Sbjct: 115 IRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAA-----ELTEREVQILRLLAQGATN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  LG+S  TV N ++ I  K     R+ A  YA+R  +
Sbjct: 170 QEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211


>gi|290958054|ref|YP_003489236.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647580|emb|CBG70685.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 297

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 28/242 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRW 66
           V +VL  +     + V     ++D                 +  + E         ++  
Sbjct: 81  VRVVLVDDHRMFRTGVQAEIGQTDRT--------------GVEVVGEAPDVDQAVSVITS 126

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  +    D    V      L   V     + I    G 
Sbjct: 127 TRPEVVLLDVHLPGGGGVEVLRRCSALMADAEQPV----RFLALSVSDAAEDVIGVIRGG 182

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 183 ARGYVTKTITGTDLVDSIFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 235

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 236 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARR 295

Query: 245 IV 246
           +V
Sbjct: 296 LV 297


>gi|83748520|ref|ZP_00945541.1| transcriptional regulator/response regulator, LuxR [Ralstonia
           solanacearum UW551]
 gi|207742131|ref|YP_002258523.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|300705355|ref|YP_003746958.1| response regulator, luxr family [Ralstonia solanacearum CFBP2957]
 gi|83724824|gb|EAP71981.1| transcriptional regulator/response regulator, LuxR [Ralstonia
           solanacearum UW551]
 gi|206593519|emb|CAQ60446.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|299073019|emb|CBJ44376.1| response regulator, LuxR family [Ralstonia solanacearum CFBP2957]
          Length = 210

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++                  
Sbjct: 2   IRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRT---------------G 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++ +           L        P        I       
Sbjct: 47  AFDVVVLDISMPDRNGIDTLKLVRQRH-----PDLPVLILSTFP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +        +              L+
Sbjct: 99  SGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQ--------TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G++   IA  L +S  TV+ Y   I+ K   K+ +    YA++N +V
Sbjct: 151 KREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209


>gi|254718531|ref|ZP_05180342.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|265983502|ref|ZP_06096237.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306838339|ref|ZP_07471185.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
 gi|264662094|gb|EEZ32355.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306406630|gb|EFM62863.1| Bacterial regulatory protein, LuxR family [Brucella sp. NF 2653]
          Length = 213

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 26/234 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E + R   V + P   D L  ++     +            +               
Sbjct: 1   MTNECKIRVLLVDNHPLVLDGLRAVLETYDDIDIAGVASNARVALEM-----ALAVNPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      D +              L     L   +  +     T      + Y 
Sbjct: 56  VLMDINMPLLNGIDAIELFKRQ--------LPNVRILMLSMHDSREYISTSIMRGASGYI 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G          +              +    +   L+ RE 
Sbjct: 108 LKDVSTNEIVTAIHAVASGGTYFSSGVSEAL-------------LESGEKRSEGLSAREN 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 155 DVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|57234510|ref|YP_181438.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57234583|ref|YP_181405.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224958|gb|AAW40015.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
 gi|57225031|gb|AAW40088.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 224

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  +          L  R   +  +                    G     +  
Sbjct: 5   QMIKVLLADDHVIVREGTRELIQRESGMMVVGEASD---------------GVEAVEMSM 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  + +           L     L    + +    +     
Sbjct: 50  KVHPDVVVMDIAMPRLNGIEATKQIKQL--------LPTTAILILTAYESEQYILAILEA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +        ++   +  ++    ++       +      +A   +           
Sbjct: 102 GAASFLLKNVKGTQLLEAIRAVYAGESVLQPSTTRRVIDQLINKATKTEEVSAVNP---- 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L   + G ++ +IA  L +S  T+  ++++I +K +  +R+ AI Y ++   
Sbjct: 158 LTDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRGW 217


>gi|259505660|ref|ZP_05748562.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259166742|gb|EEW51296.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
          Length = 212

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   +D +  +  +    +            G    L+    
Sbjct: 2   IRVLLADDHEIVRLGLRAVLESADDIEVVGEVSTAEAAVQA----AAAGGIDVILMDLRF 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q       +D    + R +              P  L    + T  + +       
Sbjct: 58  GPGVQGTQVSTGADATAAIKRNIDN-----------PPKVLVVTNYDTDADILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +         ++A       ++          LT
Sbjct: 107 LGYLLKDAPPNELLAAVRSAAEGDSTLSP-------MVANRLMTRVRT------PKTSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI  IL +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 PRELEVLKLVAGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 212


>gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 249

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 71/245 (28%), Gaps = 30/245 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L         +                                
Sbjct: 12  TVLIVDDHPLFRQGLRRLIEEGGAFKVVAEATSGHEAIRE---------------ADIHR 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      ++ R +       +         +   +               +
Sbjct: 57  PSIALIDIQLPGVTGLNVARILKKQHPSMH--------IIILSMHVDDERLFEAVRAGAS 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRL-------WEIGLLAAYQANMFKSYDVHWG 181
            + +   +   +   L  +    ++I  + +         +        +  ++      
Sbjct: 109 AFLTKDIEAQELISSLDRVVQGEQLINLEVMSRPELAWRVLSEFRQLTGDDGEAGPASDP 168

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ REVE L  +++G ++ EIA  L I+  TV N++ S++RK     R  A+  AV
Sbjct: 169 KRLPLSVREVEVLDCVAQGLSNKEIAEALFITEQTVKNHMTSVLRKLQVNDRVQAVLCAV 228

Query: 242 RNNIV 246
           RN  V
Sbjct: 229 RNGWV 233


>gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 209

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 67/214 (31%), Gaps = 17/214 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        + +L       E VG +    V  +   E + D I+       +
Sbjct: 1   MIRVMLVDDQGIVREGLSSLLNTKPDLEVVGEAENGQVALEKALEIQPDIILMDMRMPVM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A     +    +          F                Y         +   +  
Sbjct: 61  DGVAATQAIRQQAPQINIL---VLTTFDDEDYVSQAMRLGAKGYLLKDTPSDELAEAIRA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +             ++                   +  ELT RE E L  I+EG+++ EI
Sbjct: 118 VHKGYTHFGPGLFEKMITATPTVEE--------PPELAELTPRETEVLALIAEGQSNREI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           A  L IS  TV N++ SI+++   + R+ A   A
Sbjct: 170 AEALYISERTVKNHVNSILKRLNVRDRTQAAILA 203


>gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa]
 gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa]
          Length = 241

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 15/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L     L + M P+  +      +      +G  ++           +  + V   +P  
Sbjct: 8   LLWWDGLRSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKA 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDV 137
            +    +         +         V           +  N     G+           
Sbjct: 68  WLERYQMQNYGAVDPAILNGLRSSEMVVWSDSLFDQSRMLWNEARDWGLCVGATLPIRAP 127

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREV 191
             + + ++ +    + I      EI L       +         + +       L+ RE 
Sbjct: 128 NNL-LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHRER 186

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           E L W ++GK+S EIA+IL IS +TVN +  +I +K     +
Sbjct: 187 EILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNK 228


>gi|17549201|ref|NP_522541.1| nitrate/nitrite response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431453|emb|CAD18131.1| probable nitrate/nitrite response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 222

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 72/240 (30%), Gaps = 25/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G     L +  
Sbjct: 3   IRILLIDDHTLFRSGIRLLLQRQPDFEVVDEAAD---------------GLEGIKLAKRH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +A          L     +   V     E         
Sbjct: 48  RPDVILLDLNMPGLSGLETLQLLAQD--------LPDTAVVMLTVSEEADELKAALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             Y     +   +  G+        +I      ++     A  +A               
Sbjct: 100 RGYLVKNIEADTLVAGVRRAAAGEPVISESMTAKLVAHFRAPEKAAPAAPAAAASVSADR 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  ++ G+++ EIA  L ++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 160 LTPREREIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVEHGL 219


>gi|223934475|ref|ZP_03626396.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896938|gb|EEF63378.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 231

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 10/218 (4%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV------GASHFLLVRWDLFQEQKLDSIVSSD 81
            R +   ++  ++        + ++ +        GA    +         + D ++   
Sbjct: 14  RRVNKTIQVALVEDDAGVRANLASMIDCAPGFQCRGAYPDAMTALKGIPANRPDVVLMDI 73

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               ++    +S        L         V+    +           Y        ++ 
Sbjct: 74  NMPGMLGTECVSRLKNVAPTLPVLM---LTVYDDSEQIFKSLMAGATGYLLKRTPKDKLL 130

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G  + R     +           K       +   LT RE + L  +S+G 
Sbjct: 131 EAIREIASGGAPMSRQIARRVVQFFQEIKQEPKEI-TRAPEIKSLTEREEQVLALLSKGH 189

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              EIA +L IS  TV  ++ +I  K    +R+ A   
Sbjct: 190 AYKEIADLLNISFETVRTHVRTIYDKLHVHSRTEATLK 227


>gi|310287962|ref|YP_003939221.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
 gi|309251899|gb|ADO53647.1| response regulator of two-component system [Bifidobacterium bifidum
           S17]
          Length = 277

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 72/219 (32%), Gaps = 9/219 (4%)

Query: 35  RMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R+  +D            +      VG +  +     +  + + D ++            
Sbjct: 61  RVAVVDDHEMFRAGVIATLQPYFHIVGQAADVEGSIAMIADIRPDVVLLDVHVPGGEGGG 120

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                 K   +      L   V  +  +  +        Y + T     +   +  +   
Sbjct: 121 GAEILAKSQPLSPASAFLALSVSDSPQDVGSVIRAGARGYVTKTITGDDLISSIKQVHEG 180

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
             +        +  L+A+Q           G+D EL   +GRE E +  I+ G T  E+A
Sbjct: 181 YAVFSPKLAGFV--LSAFQGAPMDGAGGERGRDEELDLLSGREQEVMRLIARGYTYKEVA 238

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV  ++++++RK     R+    +A    IV
Sbjct: 239 AELFISIKTVETHMSNVLRKLQLSNRTELTRWAADRRIV 277


>gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB]
 gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB]
          Length = 215

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 32/241 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     +  L      +  +   +                G     L +  
Sbjct: 3   ITVILADDHKIIRDGLRTLIESQQGMQVIAEAEN---------------GRETIKLAKEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +  S        +     +   +           +   
Sbjct: 48  QPNVVIMDISMPDLNGIDATREIVNS--------IPGVKVIALSMHSDRRFVSGMLSAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFE 185
           + Y         +   +  +      +         +++      +  KS +        
Sbjct: 100 SGYLLKDCAFEELAKAIRTVVTNHTYLSP-------MISDIVVKSYINKSPETTTENAPS 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG T+ EIA  L +S  TV  +  +I +K      +  I YA+R  +
Sbjct: 153 LTAREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLNINRAAELIKYAIREGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + +  L      +  +   +                GA         
Sbjct: 2   IRVVVADDQPLVRAGLRTLLETEPDIEVVAVAED---------------GAKAVEQALAL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +   +      VL          F              
Sbjct: 47  RPDVVCMDIRMPGRDGISATRELCGPDVADPIPVL------VLTTFDIDDYVFGALEAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     D   I   +  +      +       +  L                    LT
Sbjct: 101 SGFLLKDADPDAIVAAVRSVAAGHGTLDTSLTRRV--LREVVTRRRTQPVTAARGSELLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  ++EG +++EIA  L +  +TV +++A +M K   K+R  A  +A ++ ++
Sbjct: 159 TRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLARMMPKLGVKSRLQAAVWAYQSGLI 217


>gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor owensensis OL]
 gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor owensensis OL]
          Length = 213

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 75/209 (35%), Gaps = 11/209 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D        +  + E        L        +  +++  D ++       +    
Sbjct: 6   ILIVDDNKDVLYGLKIILELENFEVAGLCTNAKEAIEFLEKRHADVVLMDIRMPVMDEIE 65

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                   +  ++    +    F          +   + Y   + D   I   +  +   
Sbjct: 66  GTFNIKVRFPSVR---VIILTTFCEEDYIKKSLSFGADGYILKSSDAQHIIDTIHAVLDG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +I ++       +A      F+++ ++  K   L+ RE+E    I++G ++ +I+ IL
Sbjct: 123 KVVIDKETA---LFVANSLKKDFQNHSINENKLKNLSERELEIARLIAQGYSNKDISKIL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IS  TV NYI+SI+ K   K R+    Y
Sbjct: 180 FISEGTVRNYISSILEKLELKNRTQIAVY 208


>gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
 gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
          Length = 202

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     + +++ LD                G    +           LD  +  
Sbjct: 1   MIVDDHPLMRRGIKQLLELDSIFDVVAEANN-----GGEAIIEAVKHQPDVILLDLNMKG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + ++ +     D           +   V     +         + Y     +   +
Sbjct: 56  MSGLETLKTLRNEGID--------ARIIVLTVSDARSDVYAVIDAGADGYLLKDSEPEIL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +   +            A    S         ELT RE++ L  ++ G
Sbjct: 108 LENIRQAAAGENVFSNE-----------VAQYLSSRHEQVNPFSELTERELDVLQEVARG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 157 MSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMYIEN 199


>gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 61/231 (26%), Gaps = 17/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R                ++  D                G      VR        +D
Sbjct: 3   EPLRVVVADDQALVRTGFRMILTADGMDVVAEA------ANGTEAIAAVRRTRPDVVLMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +     D           +    F          +   + +     
Sbjct: 57  IRMPELDGLEAARRILAGGGD--------TRVVILTTFDLDHYVYAALSAGASGFLLKDV 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + ++     ++       +                       LT RE+E L 
Sbjct: 109 SPEHLVAAVRMVRDGDALLAPSITRRL---VERFVGRDGDTTAIHRDLAALTPRELEVLR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ E+A  L +S  TV  ++A I+ K   + R  A+  A    +V
Sbjct: 166 LLAQGLSNAELAARLHLSEATVKTHVARILAKLQLRDRVQAVIVAYETGLV 216


>gi|218886123|ref|YP_002435444.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757077|gb|ACL07976.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 216

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               V  L    + L  ++      S            G     +V   +     +D  +
Sbjct: 4   TVVLVEDLDIVREGLKALLGAYPAFSIVGEA-----PDGIQALKIVEKHMPDIVLMDLTL 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + +R +            +R   L               +   + Y        
Sbjct: 59  PLMDGTEAIREIKRR--------CERTKVLALTAHKKDSLIYRTLSAGADGYVLKNVSSD 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +    R I  +    +  +  +  +  +           L+ RE + L  ++
Sbjct: 111 ILVQAMETVLSGRRYISPEISELL--IEDFLRHGRRESGSLLD---LLSDREKQVLKLVA 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG  +  IA  L IS  TV  + A++ RK    + +  +++A+ + +
Sbjct: 166 EGHGNKMIADKLCISHKTVEKHKANLKRKLGADSTAELVSFAIEHGL 212


>gi|22536505|ref|NP_687356.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|76788056|ref|YP_329044.1| LuxR family transcriptional regulator [Streptococcus agalactiae
           A909]
 gi|76797803|ref|ZP_00780068.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|77405005|ref|ZP_00782106.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410572|ref|ZP_00786932.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|22533337|gb|AAM99228.1|AE014206_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|76563113|gb|ABA45697.1| DNA-binding response regulator, LuxR family [Streptococcus
           agalactiae A909]
 gi|76586817|gb|EAO63310.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|77163287|gb|EAO74238.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176444|gb|EAO79212.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 213

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 75/242 (30%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ IVL  + E     +                         + A  E +G +   L 
Sbjct: 1   MDKIKIVLVDDHEMVRLGLKSFL--------------------NLQADVEVIGEASNGLE 40

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 E + D +V      ++    A     K +             +    +      
Sbjct: 41  GIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAIL---VLTSYLDNEKIYPVIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +                 +        K++D       
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVSRGE-----------QAIENEVDKKIKAHDKCPALHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +++
Sbjct: 147 GLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 211

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  ++      ++ L   ++ L  +            +                  
Sbjct: 2   IRIALVDDEAIVRDTIAFLLETTENLTLVGSFASAREAQQSL---------------PQC 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       L+R +           L     L   VF      +       
Sbjct: 47  APDVILVDIGLPDASGLTLIRALR--------PQLPHAEFLVLTVFDDNQHILEAIQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   + ++   G  +          L  +Q     +         +LT
Sbjct: 99  SGYLLKRDLPEHLISAIRIVHQGGSWMSAGVARRALELFRHQLAPAAALQ-------QLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  ++ G ++ EIA  L +S  TV  +I  I RK   + R+ A++  ++N
Sbjct: 152 PREQEVLHLLARGLSNAEIAERLYLSIETVRTHIRHIYRKLQARNRAEAVSRLLQN 207


>gi|322390996|ref|ZP_08064501.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321142300|gb|EFX37773.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 210

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +S    +  + E   G     L   +      +D ++      
Sbjct: 3   VLLVDDHEMVRLGLKSFLSMQTDIEQVLEAQNGQKGVELALKEKPDVIIMDIVMPELNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 +    +    +           Y   T     I   +
Sbjct: 63  DATLAILKEW--------PEAKIVILTSYLDNEKIYPVLDAGAKGYILKTSSATEILQAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +            +   KS   H     +LT RE + L  +++G  + 
Sbjct: 115 RKVAKGEFAIETE-----------VSQKVKSRKNHAELHDDLTARERDILALLTKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFRHHLV 205


>gi|218438401|ref|YP_002376730.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171129|gb|ACK69862.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 249

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 74/266 (27%), Gaps = 42/266 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++++VL  + +     +     ++  +  +            + A             
Sbjct: 1   MNKISVVLVEDHDLSRVGLCAALQQNQEIGVIGEAANGQEALRVIRAT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      ++ + +             R   L   +  T    +   A
Sbjct: 49  ---QPDVAVVDIGLPDIDGIEVTQTLKHLATQGEE---LRSKILILTMHKTEDSVMAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW----------EIGLLAAYQANMFK 174
              + Y      +  +   +         I                    +A        
Sbjct: 103 AGADSYALKDISLDNLVQAIKATHEGNAWIDPAIARIVLKQAKNDALATSIAPKVPETVP 162

Query: 175 SYDVHWGKDFE--------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             + H  +  E              LT RE++ L  I  G  + +IA  L I+  TV  +
Sbjct: 163 PQNSHQTRVIESVDPEYQQLLESDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTH 222

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I+ K     R+ A   A+R+ +V
Sbjct: 223 VRNILNKLCVNDRTQAAVRALRSGLV 248


>gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 249

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 16/240 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV---RWDLFQEQKL 74
            R   V  +     + A+++ +D        +       G +  +           +Q  
Sbjct: 12  LRVVGVKEV----AMSAKLLLVDDEPGVREAVKEYLAEFGFTVQVASNANDAWQMLQQNT 67

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             +V SD     V      ++ +     +    +F        + I       + Y    
Sbjct: 68  PELVISDIMMPKVDGYQFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKP 127

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLW--EIGLLAAYQANMFKSYD-------VHWGKDFE 185
           FD   +   +  L  +      D +   E+  +A   A +    D              +
Sbjct: 128 FDPDELVAIVQNLLERRAASSEDSVGSTELEKIAKQVAEIRAMLDQKNGIVQTPPPLRID 187

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  +++G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 188 FTAREQSVLDLVAQGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRYALEHGL 247


>gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 216

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G                +D  +     
Sbjct: 9   RVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGEEGVARAEELRPDVILMDVKMPGTDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +   +             L    F      +         Y     D   +   
Sbjct: 69  VEALRRLRGLDNP--------ARVLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  +    +           +      G+   LT RE E L  I++G+++
Sbjct: 121 IRSVHAGHVLLQPEVALALL--------SQEEAGGGQGRGGSLTEREREVLALIADGRSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 173 REIARALILSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 214


>gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 230

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 84/234 (35%), Gaps = 24/234 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL------------VRWDLFQEQK 73
           LPT S L + ++ ++       R+ ++   +G +   L            +         
Sbjct: 7   LPTESILPSPLLVVEDEPLIRNRLESILRGLGYADDALIFCATLKQARAQLAEHPVAMAL 66

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCS 132
           +D  +      DL+  +  +        +            +  + I +      N Y  
Sbjct: 67  VDLGLPDGSGIDLISQLRAA-----DPGMGILVISA----WSTEDAILSALRAGANGYVL 117

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              D   + + +  +   G  I       I  +A  Q             +  L+ RE++
Sbjct: 118 KERDDLEVTLSIRSVLRGGAPIDPFIARRI--IAELQPAQPTEAHKAMPPEAVLSTRELQ 175

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++G T+ EIA  L +SR TV  ++ +I RK A  +R+ A++ A    ++
Sbjct: 176 ILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 229


>gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 224

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     M  + E  G A     +     Q   LD  +     
Sbjct: 15  RVFLVDDHAVFRAGVRAELGREADMEVVGEAGGVAEAIAGINALRPQVVLLDVHMPDGGG 74

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             ++  + L               L   V     + I         Y + T   A +  G
Sbjct: 75  VAVLNGIDLGPVC-----------LALSVSDAAEDVIAVIRAGARGYVTKTISGAELADG 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +        +  L ++             +   LT RE+E L  ++ G T 
Sbjct: 124 VRRVAGGDAVFSPRLAGFV--LDSFTGRSNAPEPPLDPELDSLTPRELEVLRLLARGYTY 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 182 REIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 223


>gi|329944904|ref|ZP_08292931.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529715|gb|EGF56611.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 240

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 8/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D     +     +     +  + E   G +   L+         +D  +     
Sbjct: 4   RLILVDDQEMYRLGFRMLLETQEGVEVVGEAEDGRAAVDLIERVEADIVLMDVRMPRMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  +    F              + +      +  +   
Sbjct: 64  IEATRTITRGGAG-------GPRVIVLTTFDLDEYAYEAIRAGASGFLLKDASLEELMAA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +    A    +    D  +    +LT RE E L  ++ G ++
Sbjct: 117 IHHVHGGDAVMAPSTTRRLIEHFALPPPVVDDGDDRFRALADLTAREREVLARVARGLSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + IA  L ++  TV  +++ I+ K   + R+ A+  A  + +V
Sbjct: 177 EAIAHDLCVAEGTVRVHVSRILGKLGLRDRAQAVVLAYESGLV 219


>gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 211

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 33/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             I+ +++++  +       +  L + ++ +          S    +             
Sbjct: 1   MSIKHISLLIVDDHPVVLEGMKALLSDNESVTVKACCHDGESALRFLAE----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      LD  +      DL + +       +         +    ++        
Sbjct: 50  ----NNIDVILLDINLPDISGIDLCKQIKQLHPHIH--------IIGISNYNERSMITKM 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N Y         I   +  +  K      +    +   A +              
Sbjct: 98  LQNGANGYVLKNASAEEIINAIQSVVNKKLYFSPEVQQSLFEAALHDPMNLPK------- 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  I+EGKT+ EI   L IS +TV  +  ++M+K      +  I  A +
Sbjct: 151 ---LTRREQEVLRCIAEGKTTVEIGETLFISPHTVETHRRNLMQKFEVSNAAALIRVATQ 207

Query: 243 NNIV 246
             ++
Sbjct: 208 YQLI 211


>gi|296113282|ref|YP_003627220.1| LuxR family transcriptional regulator [Moraxella catarrhalis RH4]
 gi|295920976|gb|ADG61327.1| LuxR family transcriptional regulator [Moraxella catarrhalis RH4]
 gi|326560270|gb|EGE10658.1| LuxR family transcriptional regulator [Moraxella catarrhalis 7169]
 gi|326561965|gb|EGE12298.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           46P47B1]
 gi|326563646|gb|EGE13898.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           103P14B1]
 gi|326565275|gb|EGE15460.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566412|gb|EGE16562.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC1]
 gi|326570220|gb|EGE20265.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC8]
 gi|326570957|gb|EGE20981.1| LuxR family transcriptional regulator [Moraxella catarrhalis BC7]
 gi|326573253|gb|EGE23221.1| LuxR family transcriptional regulator [Moraxella catarrhalis
           101P30B1]
 gi|326575846|gb|EGE25769.1| LuxR family transcriptional regulator [Moraxella catarrhalis CO72]
 gi|326576930|gb|EGE26836.1| LuxR family transcriptional regulator [Moraxella catarrhalis O35E]
          Length = 213

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     ++ +      +  +                    G S  + VR  
Sbjct: 3   IKVLVVDDHDLVRMGITRMLDDDPNIEVIGEAID---------------GDSAVIQVRAI 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +  R +           ++             P          
Sbjct: 48  SPDVVLLDVNMPNINGVEATRRIKQFN-----PNIKVLAVSSLTA---QPYPSMLLKAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +    +  +   +  +    R    D   ++              +        L+
Sbjct: 100 NGYITKGTPLDEMIRAIKKVHAGSRYFSHDVAEQLA--------ETVLGEQKESPFDALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +   +++ +IA  L +S  TVN Y   I  K    +       A+R+ +V
Sbjct: 152 EREKQVAMMVVNCQSTQQIADQLFVSAKTVNTYRYRIFDKLGIDSDVKLTHLAIRHGLV 210


>gi|329726465|gb|EGG62928.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU144]
          Length = 218

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 9/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +++   M  +     G   +  V         LD  +    P    
Sbjct: 6   ADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHQPDVLILDLSM----PPGES 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A S   K          L   +F                Y        ++ + +  +
Sbjct: 62  GLIATS---KISESFPETKILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +       + +      +              L+ RE+E L  I++G  + +IA
Sbjct: 119 YQGETYVDMKLTTSL-VNEFVNQSQMDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIA 177

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 178 EKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|90961071|ref|YP_534987.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820265|gb|ABD98904.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 218

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 9/214 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  + +       +    D        +EQ+ D I+      ++   
Sbjct: 4   VLIADDQKLIRESLKIVLDTYQDIQVIDTVGDGKQVLESIEEQEPDVILMDIRMPNMDGT 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           ++     + Y  ++    +    F       +      + Y         +   +  ++ 
Sbjct: 64  VSTKLVKQSYPHIKI---IILTTFDDDDFIFSALKYGASGYILKGVSPTELHDAITTVYN 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  L +  A      DV       +T  E   +  +  G ++ EI+  
Sbjct: 121 GGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVIYQVGRGLSNKEISQE 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 181 LFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214


>gi|289768783|ref|ZP_06528161.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698982|gb|EFD66411.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 332

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 12/233 (5%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQK 73
            +  +   V       D           ++    +  + E   GA   L           
Sbjct: 99  AEPAKEPRVIRTLVADDQAVVRTGFVNLLNTQEDIEVVAEAEDGAQAVLSAGETRPDLVL 158

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      +  R +  +              L    F          A     +   
Sbjct: 159 LDIRMPHKNGIEAAREILAASGG-------ATKILMLTTFGLDEYVYDALAAGAGGFLLK 211

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   + ++     ++  +    +  +A +         V    D  LT RE E 
Sbjct: 212 DATFPELLHAVRVVAGGNALLSPEITKRL--IAEFVHARGSRLPVPAAGD--LTARETEV 267

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LT I+ G ++ EIA  L I+ +TV  +I  +  K   + R+ A+  A    +V
Sbjct: 268 LTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 320


>gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brevibacterium linens BL2]
          Length = 207

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 70/213 (32%), Gaps = 12/213 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
                   +     M  +     G+    LVR        +D  +      D  R +   
Sbjct: 2   VRQGFGALLDAQPDMSVVGSAEDGSQVVDLVRRTAPDVILMDIRMPKLNGLDATRAVFSM 61

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                    + P  +    F       +      + +         +   + ++     +
Sbjct: 62  PG-------EHPKIIMLTTFDADEYVFSALRAGASGFLLKDATAEDMITAVRVVAEGQSL 114

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +       +  ++ Y +    + D       +LT RE++ +T +++G  + E+A  L ++
Sbjct: 115 LAPSVTRRL--ISEYVSGPKIAKDTAV--LGQLTDREIDVMTLVAKGHANAEVAEHLFLA 170

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  +++ I+ K   + R+  +  A  + +V
Sbjct: 171 EQTVKTHVSRILSKLGLRDRTQIVVAAYESGLV 203


>gi|603069|gb|AAA66240.1| VsrD [Ralstonia solanacearum]
 gi|133854394|gb|ABO39206.1| VsrD [Ralstonia solanacearum]
          Length = 210

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++                 +
Sbjct: 2   IRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRT---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++ +           L        P        I       
Sbjct: 47  AFDVVVLDISMPDRNGIDTLKLVRQRH-----PDLPVLILSTFP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +        +              L+
Sbjct: 99  SGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQ--------TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G++   IA  L +S  TV+ Y   I+ K   K+ +    YA++N +V
Sbjct: 151 KREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209


>gi|37525945|ref|NP_929289.1| response regulator [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785374|emb|CAE14321.1| Transcription regulator [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 221

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     V  +      +  +   +C         A                
Sbjct: 2   INVLLVDDHELIRVGVKRILDDVKGITVVGEANCGEDAIKWCRA---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K+D ++       +    A     +Y   ++    +   ++   P  +       
Sbjct: 46  ----NKVDIVLMDMNMPGIGGLEATKRILRYCPDVR---VIMLTIYTENPLPMKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  RGYLSKASTPQDMVNAIRAVNAGQRYIAPDIAQQMALSQI--------SPQQDNPLSCLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R  +
Sbjct: 151 DRELQIMLMITKGQKVSDISEQLNLSPKTVNSYRYRMFSKLNINGDVELTHMAIRYGL 208


>gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 217

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V ++L  +D      ++ +      +  +   +                G +   L   
Sbjct: 4   RVRVLLVEDDPLFRMGLAMVLRHQPQIELVAEAED---------------GETALALANR 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              Q   LD  +        +  +     +           L                  
Sbjct: 49  HRPQLVLLDIGLPGLDGRQTLVRLKQEHPEI--------RVLVLTSREEAGLVQAMLQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + YC       R+   +  +           L ++    A   +   +          L
Sbjct: 101 ADGYCLKGIGPDRLLTVIREVSAGNGWFDAKVLAQVRSAFAVAPSEPPANAAA------L 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L WI+ G ++ EI   L IS  TV  ++ +I+RK     R+ A   A+   ++
Sbjct: 155 TEREREVLGWIARGASNPEIGRQLHISSGTVRVHVHAILRKLGATDRTQAAVLALEKGLI 214


>gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 226

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  + ++++++L  ++E+    +  L     + + +      V       ++ + +  + 
Sbjct: 1   MANDSKKLSVLLVDDEERFRQGLRTLLNFYSINSAL-----PVEVIGDADSVEQVLKFTA 55

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +       ++  +  +              L            
Sbjct: 56  -----QKCPDLILLDMQLKGCDGITVLASLKETAYT--------GKVLVLSAHQEDDWIF 102

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y        ++   +  +      +  +               +    +  
Sbjct: 103 RAMQAGAAGYVFKNRVATQLCEAIDTVTRAEIYLPSEVASRF----FRFFQAYSDSCLKA 158

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT RE E L W+++G +++EIA  L ++  TV  ++ SI  K    +R+ AI  A
Sbjct: 159 CHEVHLTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAA 218

Query: 241 VRNNIV 246
           ++  +V
Sbjct: 219 LKLGLV 224


>gi|327443251|gb|EGE89905.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
          Length = 218

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVPMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q        V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQG-----GTVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 213

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT  V       + L  ++  D  +       +       +    +         +D  
Sbjct: 5   IRTVLVDDHALLREGLRSLLGRDADLEVVGEAGSF-----DAALAEIAHTAPDVVVVDLK 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +++   ++ +R +                 L    F      +         Y     D 
Sbjct: 60  LTAGTEYEGLRLIRE-----IARRHPGVASLVLTTFLDDDVVVRAVRAGAKGYVVKDVDT 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G          +           ++          LT RE E L  +
Sbjct: 115 TELIRAIRTVSNGGSAFDPRSAAIV----------LRTVSGEQESTATLTDREHEVLKLL 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++GK++ E+   L IS +TV  +I +++RK     R+ A+  A +  ++
Sbjct: 165 ADGKSNAEVGRALFISESTVKFHIRNVIRKLGVTKRTDAVYVASKRGLI 213


>gi|291455021|ref|ZP_06594411.1| two component system response regulator [Streptomyces albus J1074]
 gi|291357970|gb|EFE84872.1| two component system response regulator [Streptomyces albus J1074]
          Length = 297

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 67/221 (30%), Gaps = 10/221 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               +       L    + T       E   G +   L R        +D+ +      +
Sbjct: 2   LLADEQPLVRGGLRALFAATPSFRIEGEAENGDALVELARLHAPDVVLMDAALPGPRVLE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +VR +A  +       +        P        +             +     I  G+ 
Sbjct: 62  VVRHLARDQPHPI--GVVLLVSEQGPADT---WVLEAARAGARGLLLKSGGQEAILSGVR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSD 204
            +   G  +  +    +  +     + +        +D  L T RE++    +S+G T+ 
Sbjct: 117 DVAAGGIAMSTE---FVSQILKALHSAYLPAAERPFRDISLLTPREMQVFRLVSQGLTNQ 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +I+  L +S  TV ++   I  K   + R  A+  A    I
Sbjct: 174 QISNRLVLSEATVKSHFNRICHKLDLRNRVDAVILAYETGI 214


>gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 224

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 38/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       +  L      +  +                    G     +   
Sbjct: 20  KIRLLVVDDHPPMRMGLIALIKSQPGMDVIAEASD---------------GEEAIEVYDD 64

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     +D  +      + +  +     D           +    +    +        
Sbjct: 65  VLPDIVMMDLRMPGMGGVEAILSICKKHPD--------AKVIVLSTYDWDEDIHRAIQSG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y      V  I   +  +      + R     +                   K  +L
Sbjct: 117 AKSYLLKDMSVEEIASTVREVHEGISSLPRQVAERL---------------EERSKRQQL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L ++ +G+++ EIA  L +S  TV +++ S+  K   + R+ A   A+R+ IV
Sbjct: 162 TERERDVLEYLIKGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDRTEAAIEAIRHGIV 221


>gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans
           2-40]
          Length = 227

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 32/248 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       VS +  R D    + P                  GA  F L +  
Sbjct: 1   MKVLLVEDHLLFRDGVSLILERLDPNTEITPCGT---------------GADAFALAQQH 45

Query: 68  L-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    LD  +      + +  +          ++           +         A  
Sbjct: 46  ADFSLVLLDYNLPDTTGLNCLAQIQAHLPTT--PIV------MLSAENKAELIQQVLAAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA--------YQANMFKSYDV 178
              + + T     +   + L+   G  I ++ +  + +           + A+       
Sbjct: 98  ARGFITKTSPSDVMISAIKLVLSGGVYIPQEMISALNMPFTAHSSDGITHAASPAPQTAP 157

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               D +LT R++  L  + +G ++ EIA  L +S +TV  ++A+I+R+   K R+ A+A
Sbjct: 158 PATGDHQLTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAILREFNVKNRTQAVA 217

Query: 239 YAVRNNIV 246
           +A + NI+
Sbjct: 218 HARQKNII 225


>gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 17/232 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D  A    +    + +  M  +T+ +G  H+ LV   +  +  + S+   D+P D
Sbjct: 5   LGQVQDFCAVAGAIKDATALSDLMAEITKAMGFRHYALV-HHVDLKPAVRSVHIVDYPQD 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCS 132
            V             + +           +  +                  AG+ + +  
Sbjct: 64  WVERFQARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTV 123

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGR 189
                  +          G ++   +L  + L+ ++     +          E   LT R
Sbjct: 124 PAHIPGELNGSCSFAMAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSEWPSLTER 183

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + EC+  ++ GKT  EI+ ILGI + TV  ++     +     R+     A+
Sbjct: 184 QAECVALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRAL 235


>gi|313764565|gb|EFS35929.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313807407|gb|EFS45894.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313816106|gb|EFS53820.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818453|gb|EFS56167.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820216|gb|EFS57930.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313822975|gb|EFS60689.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827995|gb|EFS65709.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|314915562|gb|EFS79393.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918484|gb|EFS82315.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919972|gb|EFS83803.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314925444|gb|EFS89275.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931985|gb|EFS95816.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955854|gb|EFT00254.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958335|gb|EFT02438.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314960110|gb|EFT04212.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314978316|gb|EFT22410.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314987819|gb|EFT31910.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990039|gb|EFT34130.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315084426|gb|EFT56402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315085766|gb|EFT57742.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315088816|gb|EFT60792.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315098426|gb|EFT70402.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101218|gb|EFT73194.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315108440|gb|EFT80416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327332048|gb|EGE73785.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327453760|gb|EGF00415.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328753578|gb|EGF67194.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
          Length = 218

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q        V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQG-----GTVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|300692737|ref|YP_003753732.1| response regulator, LuxR family [Ralstonia solanacearum PSI07]
 gi|299079797|emb|CBJ52474.1| response regulator, LuxR family [Ralstonia solanacearum PSI07]
          Length = 210

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++                  
Sbjct: 2   IRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRT---------------G 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +F    LD  +      D ++ +           L        P        I       
Sbjct: 47  VFDVVVLDISMPDRNGIDTLKLVRQRH-----PDLPVLILSTFP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +        +              L+
Sbjct: 99  SGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQ--------TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G++   IA  L +S  TV+ Y   I+ K   K+ +    YA++N +V
Sbjct: 151 KREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209


>gi|295839399|ref|ZP_06826332.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|295827445|gb|EDY46841.2| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 226

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 60/228 (26%), Gaps = 15/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   D +AR       +         T   G          L     LD  +
Sbjct: 9   RVMVVDDHPMWRDAVAR------DLEAAGFAVVATAGDGPQAVRRASAALPDVLVLDLNL 62

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 ++ + +       +         L         + +         Y   +    
Sbjct: 63  PGLPGVEVCKRLVRERSGPH--------VLVLSASGEHQDVLEAVKSGATGYLLKSASTE 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWI 197
            +   +        +        +       A                LT RE E L  +
Sbjct: 115 ELIDAVRRTALGEAVFTPGLAGLVLGEYRRLAAESAPKAAGARPGTPRLTDRETEVLRLV 174

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 175 AKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 222


>gi|254507039|ref|ZP_05119177.1| transcriptional regulator [Vibrio parahaemolyticus 16]
 gi|219550034|gb|EED27021.1| transcriptional regulator [Vibrio parahaemolyticus 16]
          Length = 212

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +               +  +      +    R+  L               
Sbjct: 5   IKVVIADDHQVVLDGFMARLQMEPEIEVIGTASNGLEAVERVKQL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +             +   L   +       +       
Sbjct: 50  KPDVVLMDVSMPIMNGIEATNMIREEN--------PQAKILMLTMHDNREYIMKVMQVGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +  +              +           +       K   L+
Sbjct: 102 VGYMLKEISADKMVQAIKTVNQGSTYFCESVTQTL---------FSQDVVPASQKPNPLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  +++G +S ++A +L IS  TV  +  +I  K    + +    YAV   +V
Sbjct: 153 RREEAVLKLVAQGHSSKKVAAMLNISYRTVETHRQNIKHKLDLHSTAELAKYAVERGLV 211


>gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0205]
          Length = 243

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 13/232 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSIVSSDWPF 84
                 AR++ +D        + A  E  G    +           ++ L  +V SD   
Sbjct: 11  LTPAAPARLLLVDDEPGLRTAVQAYLEDEGFVVTTAVDGEDGWAKAQELLPDVVISDVMM 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +    L  K +    L     +F        + I       + Y    FD   +   +
Sbjct: 71  PRLDGYGLLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDELVARV 130

Query: 145 MLLFPKGRIILRDRLW----EIGLLAAYQ---ANMFKSYDVHWGKDF---ELTGREVECL 194
             +  +   +L +       +IG +A       ++  +            E T RE   L
Sbjct: 131 HNVVKRQERLLTEAARFADADIGQMAKQITEIRSLLATGGSKQPTAAVKHEFTPREASVL 190

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N +V
Sbjct: 191 QLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYALENGLV 242


>gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 228

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 15/219 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           ++ +D  +     +    E  G              +   +       D ++     F+ 
Sbjct: 4   ILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNPPDLVISDVMMPHMDGFEF 63

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +  S   +    +    +        L   +   +   + Y    F    I   +  
Sbjct: 64  CRRLRSSRLGQLVPFIFLSGQG------ELESKVEGHSIGGDDYLVKPFQPKEILAKVKG 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +   I  + +  +      Q  +         +   LT  E      + +G T+ +I
Sbjct: 118 QLERSHRIHAEIVRLLQNSGVEQVKIPPPTVTPESQPLPLTPAEERVFWEVIQGYTNKQI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  L IS  TV  +++SI  K   + RS  + +A+    
Sbjct: 178 SDRLFISPRTVQAHLSSIFSKLQLENRSQLVRFALEGGY 216


>gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 229

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L R        +D ++     
Sbjct: 4   RVLIADDHAVVRQGLRMILGLDNEIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           +     +           +         +     +   +R  
Sbjct: 64  VSATAEIRQD--------IPEVEVVALTSSLDDAMVMGAVRAGAIGFLLKNAEADDLRNA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +    +           +             +LT RE E LT ++ GK +
Sbjct: 116 VKAAAAGQIHVSPAAI-----------SRLMGQVREPSGPEQLTERETEVLTMLARGKAN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I + TV  Y++ I+ K    +R+ A  YAV++ +V
Sbjct: 165 KEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207


>gi|25010384|ref|NP_734779.1| hypothetical protein gbs0310 [Streptococcus agalactiae NEM316]
 gi|77408096|ref|ZP_00784843.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77413304|ref|ZP_00789499.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|23094736|emb|CAD45955.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160618|gb|EAO71734.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77173280|gb|EAO76402.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 213

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 75/242 (30%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ IVL  + E     +                         + A  E +G +   L 
Sbjct: 1   MDKIKIVLVDDHEMVRLGLKSFL--------------------NLQADVEVIGEASNGLE 40

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 E + D +V      ++    A     K +             +    +      
Sbjct: 41  GIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAIL---VLTSYLDNEKIYPVIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +  +                 +        K++D       
Sbjct: 98  AGAKGYMLKTSSAAEILNAIRKVARGE-----------QAIENEVDKKIKAHDKCPALHE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA +++
Sbjct: 147 GLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHH 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|229168156|ref|ZP_04295884.1| Response regulator receiver [Bacillus cereus AH621]
 gi|228615400|gb|EEK72497.1| Response regulator receiver [Bacillus cereus AH621]
          Length = 596

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 77/238 (32%), Gaps = 22/238 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDL 68
           +  +  L   S+   R+  +D        ++ + +             G     L     
Sbjct: 369 SCALPRLVQLSNEPIRLCIVDDHSFIRESLHTILDGQDGLQVVGMAEDGEQAVELCERLK 428

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +S+       + +        +  ++         F              +
Sbjct: 429 PDLVLMDLEMSNLNGIRATKIIKGK-----WPEIRVLILST---FQDTKRAKEIIRNGAD 480

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   + D   +   + L++  G +I +D   +  +                GK++ LT 
Sbjct: 481 GYLLKSIDSRELAESIRLIYRGGTMIDQDLFHK--MWDGNDEEESVELKS-DGKEYGLTK 537

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  +S+G     IA  L +S  TV NY +++  K   K R  A+  A    ++
Sbjct: 538 RELEVLNLLSQGIRYKTIASKLYLSNGTVRNYASTLYDKLEVKNREEAVKKARDTGLL 595


>gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 22/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         L  ++     +             G         D      +D  +
Sbjct: 5   RVVIVDDHALVRQGLRLILHGVAGIEVVGEC-----SCGEDALKAAVKDRPDVMLMDVHM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
               P  L          +    ++    +   +F              +       D +
Sbjct: 60  ----PQGLDGITTARHLRQIAPQVR---VIMLTMFDDRVHVEKMLDAGVSGIVFKHDDSS 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +    P    + R           +                 L+ RE E L  ++
Sbjct: 113 EIVAAIQHGQPGHPYLSRR----------WGQRANAETVSPSRTAERLSPRETEVLVLLA 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T+ E+A  L IS  TV  +   IMR+    +R+  + YA +N +V
Sbjct: 163 QGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGLV 210


>gi|269957500|ref|YP_003327289.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306181|gb|ACZ31731.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 223

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   V+    +  + E   G +   + +        LD  +     
Sbjct: 3   RVLIADDQPLVRAGLTALVNLEPDLEVVGEAGDGVTALAMAQDLRPDIACLDIRMPGLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             + R +   + +    VL          F              + +     +   I   
Sbjct: 63  IAVARRLCGPDVEAPIPVL------VLTTFDLDDYVFGALEAGVSGFLLKDAEPETITTA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I +     I  L  +              +  LT RE E L  +++G ++
Sbjct: 117 IRQVAAGNGTIDQTLTRRI--LREFVQRRSLQPVSTSRGNGVLTSREQEILLLLAQGMSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L +  +TV +++A ++ K   ++R  A+ +A +N  V
Sbjct: 175 DEIARTLVVELSTVKSHLARMLPKLGVRSRLQAVVWAYQNRFV 217


>gi|109898606|ref|YP_661861.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700887|gb|ABG40807.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 215

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 25/234 (10%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           + E   R   V   P     L+  +     +           + G               
Sbjct: 5   HSEQPIRLLLVDDHPMVQGGLSACLSFYDDIEIVG-----MTHDGKDALEKALDLKPDVI 59

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  + S    D    +  S        L     L   +  +     +      + Y  
Sbjct: 60  LMDISMPSMNGIDATEIITDS--------LDDTKVLIFSMHDSPEFVTSSIQAGASGYIL 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +              +                      +LT RE  
Sbjct: 112 KDTTSEEVYYAIKAVAKGQTHFSSSIAKMLI------------DKPIKDTSQKLTTREQL 159

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT +++GK+S EIA IL IS  TV  +  ++  K   ++ +  I YAV + +V
Sbjct: 160 ILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHGLV 213


>gi|226315376|ref|YP_002775272.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098326|dbj|BAH46768.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 593

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 14/254 (5%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLA---RMIPLDCTVSWTMRMYALTE----- 54
            E  Q  + ++  DE   + +  LP    + +   R++ +D        +  + +     
Sbjct: 341 LEALQGRLSIHCMDEGGVTVICSLPAMQAVPSAGIRILIVDDQPFVRESLQLVLQNQQDL 400

Query: 55  -YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
             VG +   L+  D+  ++K D ++       +     +    + +  ++    +    F
Sbjct: 401 QVVGVAENGLMALDIIPKEKPDVVLLDVQMPVMDGAKTIQAIRERWPDMR---VIMLTTF 457

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                         N Y   +     +   + ++     +I       +      Q    
Sbjct: 458 EETALAAETLGRGANGYLLKSVSPVELVEAIRVVHQGEALINHKIAEVLFKEMRLQQEEL 517

Query: 174 KSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                  G+D  + LT RE   L  + EG     IA  + +S  TV N    I  K   K
Sbjct: 518 NGLRQKQGRDCPYGLTERERGILASLVEGLRMKTIAEKIFLSEGTVRNCTTVIYAKLGVK 577

Query: 232 TRSGAIAYAVRNNI 245
            R  A+  A    +
Sbjct: 578 NREEAVKKARDEGL 591


>gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 211

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 39/245 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +I  + +++  +       +  +  +   +  +                    G   
Sbjct: 1   MDLDIP-IRVLVAEDHNIVRQGIVAILNQQAQITVIAEAKN---------------GVEA 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +          +D  +      + +  +                 +    + T  +  
Sbjct: 45  VEMHALHQPDITLMDLRMPQMEGLEAINRIRE--------ATPAACIIILTTYDTDEDIY 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +    R I  +                +  D   
Sbjct: 97  RGLQAGARGYLLKDTTAEDLATAVRQVHHGKRYIPIEV-------GIRLTERIQESD--- 146

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  ++EGK++ EIA  L IS  TV  +I +I+ K     R+ A+  A
Sbjct: 147 -----LTDRELEVLGELTEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITA 201

Query: 241 VRNNI 245
           +R  I
Sbjct: 202 LRRGI 206


>gi|326331183|ref|ZP_08197479.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325951078|gb|EGD43122.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 30/243 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E + + + L  + E     ++ L    D +A +            +  +        
Sbjct: 1   MLTETRTIRVYLLDDHEVVRQGLTTLLDSHDDIAVVGQGGTAAQAREDIDRI-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD+ +      ++ R +  +  D    +L          +       
Sbjct: 53  -------QPDVCVLDARLPDGSGIEVCREVRAAYPDMLALIL--------TSYDDDEALF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +        Y         +   +  +   G ++         L+ A      ++ D   
Sbjct: 98  SAIMAGAKGYVLKDIRGNDLVEAIRTVSGGGSLLDP-------LMTAKVMEKMRNPDGES 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT +E   L  I EG T+ EIA  + ++  TV NY++SI+ K   + R+ A   A
Sbjct: 151 PQMQALTPQEKRLLALIGEGLTNREIAGRMFLAEKTVKNYVSSILAKLGVQRRTQAALMA 210

Query: 241 VRN 243
              
Sbjct: 211 KEL 213


>gi|302538423|ref|ZP_07290765.1| response regulator [Streptomyces sp. C]
 gi|302447318|gb|EFL19134.1| response regulator [Streptomyces sp. C]
          Length = 223

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 66/230 (28%), Gaps = 14/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
           E+    +  +    D       L   +  T     + E   G      V         +D
Sbjct: 2   EEEDRTIPRVLIVDDHPLFREGLRAALESTRGAVVVAEAETGGEVPDAVDRHRPDVVVMD 61

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +A +              L   +       +         Y     
Sbjct: 62  LSLPDVSGIEATRRLAGTH--------PGLPVLMLTMSDDDGSLLAALQAGARGYVVKGA 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   L  +   G +I  +    +  L        +     +     LT REVE L 
Sbjct: 114 GSEEVLHALRTVAAGGAVIGSEIAARLSELL--AGGRRRDAGQLFPS---LTSREVEVLE 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+ G  +  IA  L +S  TV N+I  +  K    +R+ A+A A    +
Sbjct: 169 LIARGHDNRRIARELVLSEKTVRNHITHVFEKLQVTSRAEAVARARDAGL 218


>gi|307150361|ref|YP_003885745.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306980589|gb|ADN12470.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 224

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 24/245 (9%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N  +  + I+L  +       +  L   +     +      +        L         
Sbjct: 4   NKTLTPIRILLVDDHNLMRRGLKGLFALNPDYEVIGEATDGLQAIELQEQL--------- 54

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       +D  +         + +   +             L    +    + + 
Sbjct: 55  ------KPDIILMDIDLPLLDGISATQRIKRDDT--------ATKILALSAYDHDTQVLG 100

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             A   + YC    +   + + + L+   G  +      ++  L     +     +    
Sbjct: 101 MLASGADGYCLKNIEWEELLVIIRLISHGGVYLDPRIAHKVSHLLKS-GSFAVETNTTPK 159

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE   L  I+EG ++ +IA  L +S  T+ +Y+  ++ K +   R  A A AV
Sbjct: 160 AVTVLSERERLILKLIAEGFSNKKIAEQLFLSPGTIKSYVRMLLNKLSVDDRVQAAAKAV 219

Query: 242 RNNIV 246
           R  ++
Sbjct: 220 REGLI 224


>gi|271969439|ref|YP_003343635.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512614|gb|ACZ90892.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +S +  +  + E   G       R        +D  +      
Sbjct: 5   VLLADDQALVRAGFRSLLSRSKELTVVGEAATGDEAVRQARSTEPDVILMDIRMPGMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +                 +    F T            + + +     A +R  +
Sbjct: 65  EATRRILAER--------PATKVVILTTFDTDEHVFAALRAGASGFLTKEVAPAELRHAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +    A+     +   V       LT RE E +  ++EG ++D
Sbjct: 117 AVVAAGEALLSPSVTRRVVQQFAH-----RPAPVSGDGLAVLTVREREVVRLVAEGLSND 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L IS  T   ++   + K   + R+  +  A    +V
Sbjct: 172 QIAAKLVISPLTAKTHVTRALMKLNARDRAQLVILAYETGLV 213


>gi|256396944|ref|YP_003118508.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363170|gb|ACU76667.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 231

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 20/231 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           ++R++  D        + +L       + VG +        +    + D ++       L
Sbjct: 1   MSRILIADDQALLRASLRSLVNGYDDCQVVGEAANGAQAVHMAAGLRPDLVLMDVRMPVL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A          ++         F              + +       A +   + +
Sbjct: 61  DGIEATRRITAADPGVRVL---ILTTFDLDEYVYEGLLAGASGFLLKDSPPADLVTAIEV 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYD-----------VHWGKDFELTGREVECLT 195
           +     ++       +                                  LT RE E LT
Sbjct: 118 IRSGEALLTPAATRRLITEFVRSRRTPNRATATAATTANAIAPPDPALDGLTAREREVLT 177

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ GK++ EI+  L +S +TV  ++++++ K   + R+  +  A    +V
Sbjct: 178 LVARGKSNTEISTELFVSMSTVKTHMSALLAKLGARDRAQLVIRAYEGGLV 228


>gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 24/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     I    T++    M  + E   G     + R        +D  +     F
Sbjct: 9   VMIVDDHFVMRIGFKTTINMQPDMQVVAEAGTGNEALDVYRQHQPDVVLMDLRLPGMSGF 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +  +                 +    +    +           Y   +     +   +
Sbjct: 69  EAIAALTKE--------FPSAQAIAISTYEGEEDIYRALQLGARTYLPKSVLEKELAEAI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +       +     +                EL+ RE+E L  I +G ++ 
Sbjct: 121 RAIHGGGSYVPPLVAARLAERTHH---------------RELSEREIEVLQRIVKGLSNK 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TV  ++ +I+ K   + R+ A   A++  IV
Sbjct: 166 EIAGHLFITEATVKLHVGNILTKLGVQDRTQASTVAIQRGIV 207


>gi|320105355|ref|YP_004180945.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319923876|gb|ADV80951.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 217

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 28/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E R   V   P   D +A  +     +             G    +     L     +D 
Sbjct: 14  EIRILCVDDHPLIRDGIAFALQFQKDMKLVGEAK-----HGEEAVMQFERLLPDVTLMDI 68

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D +  +          V  R   +    +    +         + Y   +  
Sbjct: 69  QMPGMNGIDAIHAIRK--------VSPRAKIVVLTTYAGDVQAARALEAGASGYLLKSML 120

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + + +  ++   R I  +    +                      +L+ RE E L  
Sbjct: 121 RTELVVTIREVYEGRRRISPEISATL---------------SEHLSANDLSPRETEVLRS 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G+++ +IA  L IS +TV  ++ SIM K     R+ A+  A++   +
Sbjct: 166 VAQGRSNRQIADALLISEDTVKGHMKSIMAKLDAGDRTQAVIIAMKRGFL 215


>gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 241

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 21/223 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +       S    +      +  S F  +     +    +  + S++P +          
Sbjct: 12  LAANGDANSLRTVLADAGAALDLSCFAYLSMSPRRGGVPE--LISNYPVEWTDHYLREHY 69

Query: 96  DKYYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFDVARIRI 142
           ++   V+        P                    +     G+   +     D      
Sbjct: 70  ERVDPVIAVALAGTEPFEWGQEFAAKRLSKSQCALLDEAAQFGIRCGFTVPIHDSRGPVA 129

Query: 143 GLMLLFPKGRIILRDRLWE----IGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTW 196
            +     + R   +  + +    + L+A Y     +             L+ RE ECL W
Sbjct: 130 AVTFAADERRPTFQRCIEQNRSVLQLMAMYFHAHARRRLSINRVIDGVALSPREFECLEW 189

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++GK++ EI  +L ISR T   ++ +   K   +T   A+A 
Sbjct: 190 AAQGKSAWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVAK 232


>gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 215

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 63/223 (28%), Gaps = 18/223 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  + E   G     L          +D  +      
Sbjct: 6   VLIVDDHQFFRDGVRALLDAQSDMEYVGEATTGEEAIRLSAEMQPDVVLMDVHMPGMGGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D     A  +  K    ++         F                Y         +   +
Sbjct: 66  D-----ATHQIMKNSPQIRVLVVTM---FEDDHLVFAAMRAGARGYLLKGVRHEDMVRAI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
             +     I           +A    + F +           EL+ RE E L  +++G  
Sbjct: 118 RAVGNGDAIFSPA-------IATKLVSYFSTLQPAHLAPVFPELSQREREILALLAQGCK 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L +S  +V NY+++++ K     R+ AI  A    +
Sbjct: 171 NAEIAERLVVSPKSVRNYVSNVISKLQVADRAQAILRAKDAGL 213


>gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 224

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 32/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +  ++  + E     +S      + +  +            +                 
Sbjct: 2   PIRTLIVDDHELVRRGLSTYLMTEEGIEVVGEAANGKEALASIRKT-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +  R            +      +    +    +        
Sbjct: 48  -RPDVVLMDLVMEEMDGVEATREAVQ--------IHPGIRVIVLTSYINDDKVFPALEAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T     I   +         +       +           +          +L
Sbjct: 99  AFSYLLKTARAEEITAAIRSAHRGESTLEPKVSARLL---------KRVRKPQPLPHEDL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  + + KT+ +IA IL I   TV  ++++I+ K   + R+ A  YAV++ +
Sbjct: 150 TIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLEDRTQAAVYAVKHGL 208


>gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 221

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 76/244 (31%), Gaps = 26/244 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +V+  +     S +  +      +  +       +    +  L            
Sbjct: 1   MTKITVVICDDQPLILSSLKLILETDPHIHVIGTASNGQAGLEMVREL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  + +A +          +   +    F+          
Sbjct: 49  ---NPTVALMDIQMPQMDGIEATKLIASTT---------QTKVIVLTTFNRDDYLFDAMD 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + +     +   +   +  +     ++  +   ++       A    S         
Sbjct: 97  AGASGFLLKNAEPELLATAVHQVAAGNGLLSPEVTLKLIQRNTGAAQSTPSAAATAEAQL 156

Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  ++ GK + EIA +LG+S  TV  ++++++ K   + R   + +A R
Sbjct: 157 LEALTERERQVLGELATGKNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHR 216

Query: 243 NNIV 246
             ++
Sbjct: 217 AGLI 220


>gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 231

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 70/235 (29%), Gaps = 21/235 (8%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++++  ++    + +S +      +      D           L              
Sbjct: 14  PISVLVVDDEPVIRAGLSAILDSQADITVAGTADDGEQAVEACARL-------------- 59

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +        +  +             R   L    F             
Sbjct: 60  -RPDVLLMDIRMPRRDGLWALAELGRRGLL----GPGRSRVLMLTTFDLDAYVDDALTAG 114

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +        ++   +         +       I  +  + +   +  D    +  +L
Sbjct: 115 ASGFLLKNSSYEQLTEAVRAAAAGHSALSPAVTRRI--IEGHLSGRPRPSDQELARLRDL 172

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T REV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A 
Sbjct: 173 TEREVDVLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 227


>gi|258651492|ref|YP_003200648.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554717|gb|ACV77659.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 219

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 28/243 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLP--TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           Q V++ +  +     + V         D +A +                   VG +   +
Sbjct: 3   QPVSVFVVDDHALFRTGVKAELAGLGDDRIAVVGEAGS--------------VGEAVVRI 48

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                      D ++      D      L +       +     L   V     + I   
Sbjct: 49  TSNPP------DVVLLDVHMPDGGGRSVLEQVHSKLPDV---VFLALSVSDAAEDVIAVI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y + T     +   ++ +     +         G +    ++      +   + 
Sbjct: 100 RAGARGYVTKTISGRELADAIVRVSAGDAVFSP---RLAGFVLDAFSDRGSPAPITDPEL 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A   
Sbjct: 157 DLLSPREREVLKLLARGYAYKEIAAQLFISIKTVETHVSSVLRKTQKSNRYELSRWASDR 216

Query: 244 NIV 246
            +V
Sbjct: 217 RLV 219


>gi|186685215|ref|YP_001868411.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467667|gb|ACC83468.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 239

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 34/257 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I L  + +     +     + D +  +            +  +            
Sbjct: 1   MSKIRIALIEDHDLTRVGIRTALIQKDEIEVVGEAANAAEGLKMLKMV------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R +  +   +          L   +       +   A
Sbjct: 49  ---QPDIAIVDIGLPDKDGIELTREVKSTANGQQ----LATKVLILTLRDNKEAVLAAFA 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-------QANMFKSYD 177
              + YC        +   + + +     I       +   A              K+  
Sbjct: 102 AGADSYCMKDIKFDNLLEAVRVTYNGNAWIDPAIARIVLQQAQQNPQKLESAFVDAKTIA 161

Query: 178 VHWG--------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +          + + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K  
Sbjct: 162 SNPDYVENLEGIQPYTLTERELEVLQLIVEGCSNALIAERLYITVGTVKTHVRNILNKLC 221

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 222 ADDRTQAAVRALRSGLV 238


>gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus
           sp. MC-1]
          Length = 206

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 73/223 (32%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S    +  + E   G     L+R        LD  +     
Sbjct: 3   RIIMADDHTIFRQGLAHLLSAHQELEIVGEAGRGDDALQLIRDLNPDVALLDISMPGLNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D+V+ +   +        +    L   +       I         Y       + +   
Sbjct: 63  LDVVKRVVEEK--------RPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ +    R +               A      +       +L+ RE E +  +++G+T+
Sbjct: 115 ILAVAAGKRFVSEV-----------VAEKVNELERLDDLPVQLSPREKEVVRLVADGQTN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LGIS  TV+ +   +MRK    T +  + YA+R  +V
Sbjct: 164 KEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRMGLV 206


>gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 217

 Score =  118 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 79/241 (32%), Gaps = 28/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   +V+  +       +  +    + ++ +  +   +     +               
Sbjct: 1   MKACRVVIADDHAMLRRGICQVIETQEGVSVVGEVGDGIELLNLL--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +  + +  +     Y  ++     F  +           +
Sbjct: 46  STQPADLVILDISMPKMSGIEAAKKIRAT-----YPGIKIL---FLSMHKRNEYLYHAFS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y         I   +  +      +      ++  +         S+        
Sbjct: 98  AGANGYLLKEDTDTEILTAMDTILEGKAFLSSIFTKDMPDILTDMVKNGSSFPGG----- 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E LT ++EGK++ +IA IL IS  TV ++ ASIM++   +T +  I YA+R+ 
Sbjct: 153 TLSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKYAIRHG 212

Query: 245 I 245
            
Sbjct: 213 Y 213


>gi|254688650|ref|ZP_05151904.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 6
           str. 870]
 gi|256256897|ref|ZP_05462433.1| Bacterial regulatory protein, LuxR family [Brucella abortus bv. 9
           str. C68]
 gi|260754126|ref|ZP_05866474.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260883151|ref|ZP_05894765.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297247749|ref|ZP_06931467.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|260674234|gb|EEX61055.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872679|gb|EEX79748.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297174918|gb|EFH34265.1| two-component system, NarL family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 213

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 26/234 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E + R   V + P   D L  ++     +             GA+    V  ++   
Sbjct: 1   MTNECKIRVLLVDNHPLVLDGLRAVLETYDDIDIA----------GAASNARVALEMALA 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D ++       L+  +   E  K    L     L   +  +     T      + Y 
Sbjct: 51  VNPDVVLMDINMP-LLNGIDAIELFKR--QLPNVCILMLSMHDSREYISTSIMRGASGYI 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G          +              +    +   L+ RE 
Sbjct: 108 LKDVSTNEIVTAIHAVASGGTYFSSGVSEAL-------------LESGEKRSEGLSAREN 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG ++ EIA  LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 155 DVLVLVAEGGSNREIAARLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 226

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 68/241 (28%), Gaps = 26/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ ++L  + E   S +  +  R D    +            +                
Sbjct: 4   PEIRVLLVDDQELVRSGLRRILRRKDGFVIVGECADGAEVPGAV---------------V 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +         R +            Q P  L    F            
Sbjct: 49  EHTPDVVLMDLRMKKVDGIRATRDLRS--------GAQPPPVLVLTTFDDDELLSGSLRA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +         +   +  +   G  +       +       A    S D       E
Sbjct: 101 GAAGFILEDSPAEDLIRAVRTVAEGGACLDPAVTGRVLATYRTVA---PSSDGGRNHLTE 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L  I  G ++ EI   LGIS  TV +++  I  K   + R+ AI YA  + I
Sbjct: 158 LTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGI 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 211

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 + K D I+       +     + +        Q        VF    +  +  A
Sbjct: 42  ALPKLAKDKPDVILMDINLGGMSGIECVRQLKPKIPTTQIVM---LTVFEDTEKIFSALA 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y       +++   +  +   G  +      ++        ++  +         
Sbjct: 99  AGASGYLLKRMPPSKLLDAIREVNEGGSPMSAPIARKV------VESLQATRPPKPDDTA 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EL+ RE E L  ++EG    +IA  LG+S +TV NYI  I  K   ++ S A+A   R+
Sbjct: 153 ELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRRIYEKLHVRSSSQAVARYYRH 211


>gi|182435647|ref|YP_001823366.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464163|dbj|BAG18683.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 222

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     +  S L    D +  +   +                G    L     
Sbjct: 3   IRVLVADDQAVVRTAFSGLLNTQDDIEVVGEAED---------------GEQAVLRAAEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D  R +                 L    F              
Sbjct: 48  RPDVALLDIRMPRLSGIDAARGIVAESGG-------ATRALMLTTFGLDEYVYDALTAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++  +    +      +    +           LT
Sbjct: 101 SGFLLKDATFPELLHAVRVVAGGHALLAPEITGRL----IAEFTRQRVSAPPPRSVDGLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  I+ G ++ +IA  L I+ +TV  +I  +  K   + R+ A+  A    +V
Sbjct: 157 AREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215


>gi|126735912|ref|ZP_01751656.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. CCS2]
 gi|126714469|gb|EBA11336.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. CCS2]
          Length = 210

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 26/228 (11%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P  ++ +  ++     +     +       G                +D  +
Sbjct: 4   RVLIVDDHPMVAEGIRSLLESYDDLEIVGTLGN-----GQDAVDQAIALGPDVILMDLNM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                      +   + D           +   +  +     T  +     Y        
Sbjct: 59  PGLSGLAATEMILEKQPD--------TRIVILSMHDSPEYISTALSHGARGYILKDVPTE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +   G  +       +                       LT RE   L  ++
Sbjct: 111 EIHTAIETVMGGGEYLCTGAKGSLQ-------------PKISDGRETLTSREQTILLELA 157

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G+++ ++A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 158 QGQSNKDVANTLNISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 205


>gi|332306797|ref|YP_004434648.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174126|gb|AEE23380.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 215

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 70/241 (29%), Gaps = 35/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q   ++L  +       +S   +  D +  +           +  AL             
Sbjct: 8   QPTRLLLVDDHPMVQGGLSACLSFYDDIEIVGMTHDGKDALEKALAL------------- 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  + S    D    +  S        LQ    L   +  +     +    
Sbjct: 55  --KPDVILMDISMPSMNGIDATEIITDS--------LQDTKVLIFSMHDSPEFVTSSIQA 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y         +   +  +              +                      +
Sbjct: 105 GASGYILKDTTSEEVYYAVKAVAKGQTHFSSSIAKMLI------------DKPARDTSQK 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   LT +++GK+S EIA IL IS  TV  +  ++  K   ++ +  I YAV + +
Sbjct: 153 LTTREQLILTHVAQGKSSKEIARILNISFRTVEAHRRNMKSKLNIESLAELICYAVDHGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|238059115|ref|ZP_04603824.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880926|gb|EEP69754.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 220

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 12/220 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           VS    M  + E   G++   L R        +D  +      
Sbjct: 4   IVLADDQTLVRAGFRSIVSGEPDMAVVGEAADGSAAVRLARELRPDVILMDIRMPVTDGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +         + L     +    + +            + +     +   +  G+
Sbjct: 64  AATREICA------DDSLAAVKVIILTTYESDDHVYGAIRAGASGFLLKDAEPVDLIRGV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     ++       +           +           LT REVE +  +++G +++
Sbjct: 118 RVVAAGDALLAPSVTRRLISEV-----AARRTPPPAPDLASLTNREVEIMDLVAQGLSNE 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L IS  T   +++ I+ K   + R+  + +A  + 
Sbjct: 173 EIAGRLEISHATTKTHVSRILTKLGLRDRAQLVVWAYESG 212


>gi|256380392|ref|YP_003104052.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924695|gb|ACU40206.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 225

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 9/224 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D           +     +  + E V G     L R        +D  +    
Sbjct: 3   TRVLLADDQPLIRAGYRMILDSEPDLEVVGEAVNGREAVFLARTTRADVVLMDIRMPEVD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +A          L     L    F      +         +       A +  
Sbjct: 63  GIEATRRIAA------DEDLAGVRILVLTTFEEDENVLRAVRAGAAGFLGKNVGPAELLH 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     I+         L+    A+              LT RE E +   + G +
Sbjct: 117 AVRTVASGDSILSPAATK--ALVRHVLAHPESDPPQAPAPLELLTDREREVVVLAAHGLS 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +D IA  L +S  T   ++   M K  T+ R+  +  A R  +V
Sbjct: 175 NDRIAEHLHLSPLTAKTHVNRAMSKLNTRDRAQLVVLAYRTGLV 218


>gi|239983191|ref|ZP_04705715.1| two component LuxR family transcriptional regulator [Streptomyces
           albus J1074]
          Length = 326

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 74/251 (29%), Gaps = 14/251 (5%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVS----HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV 56
           M   +    +   R    R    +     L    +       L    + T       E  
Sbjct: 1   MRDALGPAAVASVRHRALRQDATASATMTLLLADEQPLVRGGLRALFAATPSFRIEGEAE 60

Query: 57  -GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
            G +   L R        +D+ +      ++VR +A  +       +        P    
Sbjct: 61  NGDALVELARLHAPDVVLMDAALPGPRVLEVVRHLARDQPHPI--GVVLLVSEQGPADT- 117

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               +             +     I  G+  +   G  +  +    +  +     + +  
Sbjct: 118 --WVLEAARAGARGLLLKSGGQEAILSGVRDVAAGGIAMSTE---FVSQILKALHSAYLP 172

Query: 176 YDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 +D  L T RE++    +S+G T+ +I+  L +S  TV ++   I  K   + R 
Sbjct: 173 AAERPFRDISLLTPREMQVFRLVSQGLTNQQISNRLVLSEATVKSHFNRICHKLDLRNRV 232

Query: 235 GAIAYAVRNNI 245
            A+  A    I
Sbjct: 233 DAVILAYETGI 243


>gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
 gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor
           NM305]
          Length = 209

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 65/225 (28%), Gaps = 26/225 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     + +++ L+                G+    L          LD  +   
Sbjct: 9   LIDDHPLMRQGMRQILELETDFVVVGEASN-----GSDGVALALELNPDLIILDLNMKGI 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +R +   E D           +   V     + +       + Y     D A + 
Sbjct: 64  SGLDTLRSLRAKEVD--------ARIVVLTVSDEQSDIVALMDAGVDGYLLKDSDTAELV 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                     +         LT RE + L WI+ G 
Sbjct: 116 ENIQKAARGEMVLSDAVRK-----------HLLEHRPQADPLATLTDRERDVLQWIATGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA--YAVRNN 244
           ++ +IA  L IS  TV  +I +++RK    +R  A     A +  
Sbjct: 165 SNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLAQQKG 209


>gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 210

 Score =  118 bits (296), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 75/240 (31%), Gaps = 31/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D      +    +       +   +                G +        
Sbjct: 1   MRILIVEDDPLMQLGLEQALSEHPNFEIIGQAED---------------GYTGVQQALEL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +   + + +         +         E +   +   
Sbjct: 46  KPDLVVMDIGLPRLDGIAATKQIKEQQPNIH--------VVMLTSHTLQTEVVAALSSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + YC     + R+   +         +          +A    +  K       ++  L 
Sbjct: 98  DAYCIKGASLERLLAAIEAAQDGATYLDP-------QIARLVLDNLKPPTPEPNQNIALL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 151 SERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210


>gi|226365530|ref|YP_002783313.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244020|dbj|BAH54368.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 16/237 (6%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLF 69
           V ++    R + V  L    D       L   +     +  + E   +     +V     
Sbjct: 7   VRDQTGSARPTSVVKLVLVDDHAILRQGLRSVLEREPDLEVVGEASSSSEALAVVGDVAP 66

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +S+   ++ +   A            +   L    F      +         
Sbjct: 67  DVVLMDLKLSAASDYEGLALCAQL-----SAADGKMGLLVLTTFLDEQLVVRAIHAGARG 121

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     D   +   +  +              +           +S +        LT R
Sbjct: 122 YVVKDVDTTELVRAIRAVSRGESAFDSRSASAV----------IRSLNGQTTPREGLTER 171

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++G ++ +I   L IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 172 ELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228


>gi|83646746|ref|YP_435181.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634789|gb|ABC30756.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 219

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 77/240 (32%), Gaps = 33/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +S +    D +  +                    G     +VR  
Sbjct: 2   IRVLIVDDHELVRAGLSRMLKDEDGIEVVAEARS---------------GEEAVSIVRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +      +    ++      C      P          
Sbjct: 47  PIDIILMDIRMPGIGGLEAMRRI-----HRIDESVKVVAVTAC---EDDPFPSRVMKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + Y +   D+  +   + ++    R I  D   ++ L         + +D   G  FE L
Sbjct: 99  SAYITKGADITEMVKAIRVVHAGQRYISPDIAQKMAL---------RPFDAEEGDVFESL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++    I       EI+  L +S  TVN+Y   I  K    +       A+R+ ++
Sbjct: 150 SEREMQIAMMIVNCHKVQEISDKLCLSPKTVNSYRYRIFEKLNINSDVELTLLAIRHGML 209


>gi|302550833|ref|ZP_07303175.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468451|gb|EFL31544.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 215

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 58/213 (27%), Gaps = 9/213 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL-----VRCMALS 93
           +D    W   +       G              ++  + V      DL            
Sbjct: 3   VDDHPMWRDAVARDLAESGFEVVATAGDGEQAVRRAKAAVPEVLVLDLNLPGKPGVQVCK 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E       L+              + +         Y   +     +R  +        +
Sbjct: 63  EVVAADPALRVL---VLSASGEHADVLEAVKSGATGYLLKSASTEELRDAVRSTAVGDPV 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                   +       A+      D    K   LT RE E L  +++G +  +IA  L I
Sbjct: 120 FTPGLAGLVLGEYRRLASEPAPAPDADEPKAPRLTDRETEVLRLVAKGLSYKQIAERLVI 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ + + K     R   + YA+   +
Sbjct: 180 SHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212


>gi|291440146|ref|ZP_06579536.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343041|gb|EFE69997.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 201

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 54/190 (28%), Gaps = 10/190 (5%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           AS     R        LD  +       + + +  +              L         
Sbjct: 17  ASGVRRARSTAPDVLVLDLNLPGKPGVRVCKEVVAAN--------PALRVLVLSASGEHA 68

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + +         Y   +     ++  +        +        +       A+      
Sbjct: 69  DVLEAVKSGATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAGPA 128

Query: 178 VHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 K   LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R  
Sbjct: 129 QGDDGSKAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVE 188

Query: 236 AIAYAVRNNI 245
            + YA+   +
Sbjct: 189 LVRYAIERGL 198


>gi|209964999|ref|YP_002297914.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
 gi|209958465|gb|ACI99101.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
          Length = 214

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 24/231 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +  L T+ D  A                                 
Sbjct: 1   MNILIGDDHLLFREGLCRLLTQLDADANFFEAGTFDEVMELCQ----------------- 43

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              +Q  D I+             + +  +                 +  +         
Sbjct: 44  --GDQDFDLILMDLQMPSWPGFPGIQQICEIQAGTPVVIVS---ASESQSDVRAALDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   +  V  +   L L+F  G  +    +   G  +   A               LT
Sbjct: 99  SGYIPKSSSVKIMLSALNLVFSGGIYVPPAAIQGEGQSSGSAAQGGGHASGPGMPA--LT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ + L  + EGK++ +IA  LG+S  TV  ++ ++MR    + R+ A+ 
Sbjct: 157 QRQRDVLRCLREGKSNKQIAYELGLSEGTVKIHVTAVMRSLGVRNRTQAVI 207


>gi|289706045|ref|ZP_06502418.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557247|gb|EFD50565.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 227

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 77/245 (31%), Gaps = 29/245 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ I++  +    +  +  L   +  +  +  +   V       A+             
Sbjct: 3   EELRILIADDQPLMSGALRVLVDSAPGMTCVGVVANGVEAVEACAAI------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +  +        ++         F +    +     
Sbjct: 50  --EPDVVLMDMQMPLMDGVEATRRIKDTH-----PAIRVLAITT---FTSEDYLVPALRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----SYDVHWG 181
               Y     +   I   +  +     ++      ++  LA+ + +       S      
Sbjct: 100 GAGGYLLKDAEPPAILGAIQAVHRGESVLSPAVATKL--LASIERDRPTVGPTSVQPGSP 157

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE+  L  ++ G+++ EIA  L +S +TV   +  IM K   + R   I  A 
Sbjct: 158 DGSDLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAA 217

Query: 242 RNNIV 246
           +  +V
Sbjct: 218 QLGLV 222


>gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 199

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 70/212 (33%), Gaps = 17/212 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
             + +   +     +  + + V G                +D ++      +  + +  +
Sbjct: 2   VRLGISTYLGVQDDLEVVDQAVNGQEGVEKALALRPDAILMDLVMPEMDGIEATKTILKA 61

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                     +   +    F    +           Y   T     I   +        +
Sbjct: 62  W--------PQAKIIILTSFIDDEKVYPAIEAGAASYILKTSTAGEIANTIRKTTAGQSV 113

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +  +   ++     +QA      D        LT RE E L  +++G+++ EIA  L I+
Sbjct: 114 LEPEVTNKMMNRMTHQAETKLYED--------LTNREREVLGLVAKGRSNQEIADELFIT 165

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV  ++++I+ K     R+ A  YA+++ +
Sbjct: 166 LKTVKTHVSNILAKLQVDDRTQAAIYAIKHQL 197


>gi|238060490|ref|ZP_04605199.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237882301|gb|EEP71129.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 226

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     M  + E   G     L R        +D  +     
Sbjct: 4   RVVLADDQALLREAFRLLVDSADDMTVVGEAADGREAVRLTRELRPDVVIMDIRMPEVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L+    +    + T            + +         +   
Sbjct: 64  LTATAEICA------DPELRTARVVILTTYETDEYVAQALRAGASGFIGKGIGAEDLLDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +  +A + A   +    H  +   LT RE E +  ++ G ++
Sbjct: 118 VRTIAAGDTLLSPAATRSL--VARFLATPDEPAHQHPEQLGVLTAREREMVALVATGLSN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  + +S  TV  ++   M K   + R+  +  A +  +
Sbjct: 176 QEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYQTGL 217


>gi|219848672|ref|YP_002463105.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219542931|gb|ACL24669.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 219

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 10/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   ++    +  + +   G     LV         +D ++     
Sbjct: 4   RVLIVDDQALIRTGIATLLARKPDIEVVGQAGNGREALNLVAQLDPDIVLMDVMMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R ++            RP  +    F      +   A     Y     D   +   
Sbjct: 64  VEATRHLSARG--------PRPAVIMLTTFPDDERVLQSIAAGARGYLLKDVDHRVLADS 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLTWISEGKT 202
           +  +   G +I      ++    +  A    S           LT RE + L  +++G T
Sbjct: 116 IRTVAGGGALIHPQITAQLLPRLSQLATPTTSLPTPSAEPSIALTPRERDILRLLAQGYT 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EI   L +S  TV N+++ I  K A + R+ A  +A  +
Sbjct: 176 NQEIGEALALSIGTVKNHLSVIFAKLAVRDRTQAALWAREH 216


>gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 211

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 78/210 (37%), Gaps = 16/210 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D   +    +  + E        L        +  + + +D ++       +    
Sbjct: 6   VLIVDDNPAVLDGLKIILELENFDVVSLCTNAKEAIEFLENRHVDVVLMDIRMPVMDGIE 65

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                   +  ++    +    F          +   + Y   + D   I   ++ +   
Sbjct: 66  GTFNIKTKFPNVK---VIILTTFCEKDYIEKSLSFGADGYILKSSDAKHIVNSILSVLDG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             ++ ++       +A Y +++  ++    + K   L+ RE+E    IS+G ++ EIA +
Sbjct: 123 KVVMDKE-------IALYVSDVLKRTSKQLFEKTQNLSERELEIAKLISQGYSNKEIARM 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L IS  TV NYI SI++K   K R+    Y
Sbjct: 176 LFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|42519536|ref|NP_965466.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583825|gb|AAS09432.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 224

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     +  +   +D  +    +         +                 +
Sbjct: 2   IKILIADDQQLIRDSIKIILESNDDFSVTDTVANGKEALNSIEK---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       +       +             +    F       +      
Sbjct: 47  KPDVILMDVRMPVMDGT-VCTKYVKEKYPDI-------KVIILTTFDDDDFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       A +   +  +   G +I  D   ++  L +  A    +  V+  +  + +
Sbjct: 99  SGYLLKGGSPADLFTAIRTVAQGGAMINPDITEKVFRLFSKMAQANYTISVNDQETKDFS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E   +  +  G ++ EI+  L +S  TV NYI+ I+ K   + R+    +AV+  
Sbjct: 159 KSEWCVIQQVGLGLSNKEISTKLFLSEGTVRNYISKILEKLNLRDRTQLAIWAVQTG 215


>gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
          Length = 279

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L   +              L + +   +  L        Q     + S++P + +   
Sbjct: 51  EYLRAFVSERSPQKLFDIAVHLAQDLDMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERY 110

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
              +  K             PV  T            +    G+ + +     D      
Sbjct: 111 QRDDFYKQDPAANLSHSSTMPVLWTDELYKEAPQFREMACLYGLRHGWTQSLHDQQHNES 170

Query: 143 GLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            + +  P G I   +       +  L      +      +       +++ RE+E L W 
Sbjct: 171 QISVARPNGPIDEVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSERELEVLKWS 230

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 231 AAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 279


>gi|309813018|ref|ZP_07706746.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308433090|gb|EFP56994.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 258

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 70/267 (26%), Gaps = 50/267 (18%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  +   V      S   + ++ ++  +         T   GA    + R        +D
Sbjct: 2   DALKVVIVDDQKMVSSGFSLILSVEDDIDVV-----ATATNGAQALDVAREVRPDVTLMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R                   +    F       +      + +     
Sbjct: 57  VQMPVMDGIEATRRFVDEGL---------GRVVILTTFDRDDYLFSALDAGASGFLLKNA 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG-------------------------------- 163
           D   +   +  +     ++  +    +                                 
Sbjct: 108 DADDLADAVRAVGHGHALLAPEVTRRVIERRVQDGSLGAGSEAARAADDGPGNVGPTTSA 167

Query: 164 -LLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
              A+   +         G   +  +LT RE E L  +  G ++ EIA  L +   TV  
Sbjct: 168 WPFASSAHSTPSLSPSRTGDGGRLDDLTPREREVLGLLGRGLSNAEIAAALFVGEATVKT 227

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++++ K   + R  A+  A    +V
Sbjct: 228 HVSNVLMKLGLRDRVQAVVAAYETGLV 254


>gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 294

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 16/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK-LDSIVSSDWPFDLVRC 89
           D L R+ P    ++ T  +  +    G SH  ++      +      ++ S+W     + 
Sbjct: 64  DRLNRLAPPWDEIALTQLLGDVATDFGFSHAAVLSVPSTDDGGTATRLLLSNWSESFGQA 123

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGM-DNRYCSLTFD 136
                  +   V+        P    +            P                    
Sbjct: 124 YEQLGLHRSKLVVGALKTDPMPFVWDIDTLYGADEPDPSPAARMLMEAEYLAGAFFPVHG 183

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLT 195
           +      L         +  + + E+ L A     M  +      + +  L+ RE +CL 
Sbjct: 184 LTAFNGALSFAGRSCA-LPAEAIRELHLFAFALFGMLAAARFEENRRNNPLSVRERDCLK 242

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               GKTS EI +IL +S  T++ Y+ +  RK     R+ A+A A +   +
Sbjct: 243 LAMLGKTSSEIGIILSLSEYTISQYLTAAQRKLDASNRTHAVALAAQLGYL 293


>gi|228474840|ref|ZP_04059571.1| transcriptional regulatory protein DegU [Staphylococcus hominis
           SK119]
 gi|314935685|ref|ZP_07843037.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
 gi|228271503|gb|EEK12871.1| transcriptional regulatory protein DegU [Staphylococcus hominis
           SK119]
 gi|313656250|gb|EFS19990.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis
           subsp. hominis C80]
          Length = 217

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 10/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +++   M  +     G   +  V         +D  +    P    
Sbjct: 6   ADDHAVVRTGFSMILNFQEDMEVVATAADGVEAYQKVMEYKPDVLIMDLSM----PPGES 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A S   K          L   ++                Y        ++ + +  +
Sbjct: 62  GLIATS---KISESFPETKILILTMYDDEEYLFHVLRNGAKGYILKNSPDEQLILAVRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     I       +       +N  +           L+ RE+E L  I++G  + EIA
Sbjct: 119 YKGETYIDMKLTTSLVNEFVNVSNQDEKATN--DPFKILSKRELEILPLIAKGYGNKEIA 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 177 EKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 215


>gi|297582617|ref|YP_003698397.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141074|gb|ADH97831.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 218

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 64/223 (28%), Gaps = 13/223 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHF-LLVRWDLFQEQKLDSIVSSD 81
           + +    D       L   +     +    E   G     LL          LD  +   
Sbjct: 3   TQILLAEDQSLVRQGLKMMIETAPDLRVTAEANNGEEALRLLAAKPAITLAILDIRMPVM 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L + +                 L    F+     I         Y     D   + 
Sbjct: 63  NGLELAKAIQEHH--------PHVMTLMLTTFNDDDYAIEALRHGARGYLLKDADPDALI 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+      G  +       +  L   +      +        ++T RE   +  +  G 
Sbjct: 115 RGIRTCLEGGLALEPHVAANVVPLLMNKPETKPEFPALPE---DITERETTVIACVGRGL 171

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ EI+  L +S  TV N I+ I+ K   + R+    YA+R+ 
Sbjct: 172 SNKEISEELYLSVGTVKNLISVILHKLELRDRTQLAIYAIRSG 214


>gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 188

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             GA    L          +D  +      D +R +   E             L    F 
Sbjct: 12  ADGAEGVALAGELAPDVILMDVKMPGMDGVDALRRLRELEHP--------ARVLVVTSFT 63

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                +         Y     D   +   +  +     ++  +    +           +
Sbjct: 64  EQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALL--------SQE 115

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G+   LT RE E L  I++G+ + EIA  L +S  TV  ++++I+ K     R+
Sbjct: 116 EAGPGTGRAGALTEREREVLGLIADGRANREIARALVLSEKTVKTHVSNILMKLDLADRT 175

Query: 235 GAIAYAVRNN 244
            A  +AVR+ 
Sbjct: 176 QAALWAVRHG 185


>gi|256833722|ref|YP_003162449.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256687253|gb|ACV10146.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 230

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 66/246 (26%), Gaps = 25/246 (10%)

Query: 1   MNFEIQ-QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           MN     Q  I++  +D    + +  +      +  +                    G  
Sbjct: 1   MNTAAPTQRRIIIVDDDALVRAGLRMILGGDPGITVVAE---------------GTHGEE 45

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
              L          +D  +         + +                 L    F T    
Sbjct: 46  AVSLYAAHQPDVVLMDIRMPVRDGLSATKDIVTRW--------PHANVLVLTTFDTDEFI 97

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         +         +   + L       +      ++    + + +  +     
Sbjct: 98  VKALRAGARGFLLKDTSPPDLVRAVNLAGDGHPTLSPSVTAQLIAKVSEEPDTGRQRQAR 157

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +LT RE++    I++GK++ EI+  L +S  TV  +I+ I  K     R      
Sbjct: 158 RMVE-QLTERELDVAQQIAQGKSNQEISQTLYMSIPTVKTHISRIFTKFDVDNRVQIAIR 216

Query: 240 AVRNNI 245
               ++
Sbjct: 217 MHDAHL 222


>gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 213

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + L  +I  +   +            G +   L          +D  + 
Sbjct: 4   VLIVDDHLVVREGLKLLIETNDHYTIIGEAEN-----GKAAVRLADELKPDIILMDLYMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + ++ +                 +    ++     I         Y         
Sbjct: 59  EMSGLEAIKLIKEQHDIPI---------IILTTYNEDHLMIEGIELGAKGYLLKDTSSET 109

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        ++  D L  +  +                 D +LT +EV  L  I++
Sbjct: 110 LFHTMDAAIRGNVLLQPDILKRLQEIRL-------EQMKKQSSDTQLTEKEVIVLKAIAK 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S  IA  LG+S  TV + + SI  K    +R+ A+  A++  I+
Sbjct: 163 GFKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGIL 209


>gi|297561144|ref|YP_003680118.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845592|gb|ADH67612.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 218

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  ++    + ++ L    D +      D        +                  
Sbjct: 2   IAINLVDDEALIRAGLAALINAEDDMRVTGQADDGADVPDLVRRT--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D ++          +     P  +    F              
Sbjct: 47  RPDLVLMDVRMP---RLDGIQATRTLHTTLTHP----PRVIVLTTFDNDDYVWGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         I   + L      ++    L  +       A    +          LT
Sbjct: 100 HGFLLKRTPPEDILAAIRLAHRGDTLLFPTALRHLA------ATQPAAPTPAARAVATLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + LT +++G T+ EIA  L +   TV  +++ I+ K   + R+ A+  A  + ++
Sbjct: 154 QRESQTLTLMAQGLTNAEIADRLFLGTETVKTHVSHILTKLGVRDRTQAVIAAYDSGLI 212


>gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.]
          Length = 229

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 73/244 (29%), Gaps = 33/244 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  +V+  +       +  L    D L  +                    G      V+
Sbjct: 13  EKKKVVIAEDHTLLRQGICVLLNSHDNLEVVGEAGD---------------GLDAIRCVK 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       +++ +  S         +    +   +       I     
Sbjct: 58  KHNPAIILLDLNMPKMNGISVIKEIKSS-----CPATKI---IVLTMHTKEEYIIEAFKS 109

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               YC  +     + I +  +    + +  +       ++      +        +D  
Sbjct: 110 GAEGYCLKSSSQEELLIAINAVLSGKKYVCPE-------ISGKILEGYIEGQKTIKQDSS 162

Query: 186 ---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  + EG  + EIA  L IS  TV  + A+IM K    T S   AY++ 
Sbjct: 163 WDMLTQREKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIE 222

Query: 243 NNIV 246
             +V
Sbjct: 223 RGLV 226


>gi|317125093|ref|YP_004099205.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589181|gb|ADU48478.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 238

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 59/232 (25%), Gaps = 11/232 (4%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +   R       P   D +AR   ++            T   G       R        
Sbjct: 12  DQGPIRVVVADDHPMWRDAVAR-DLVEAGFDVV-----ATADDGHGAVNRTRATEPDVLV 65

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      ++   +A   +        R   L         + +         Y   
Sbjct: 66  LDLHLPGLTGAEVCARLAQGSR----PGRPRTRILILSASGDSKDVLEAVKAGALGYLVK 121

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +         +        +        +        +             ELT RE E 
Sbjct: 122 SAGREEFLAAVRSTAAGEPVFTARLAGLVLGEFRRVRSEAADSASRRA-VPELTDRETEI 180

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +++ G    EIA  L +S  TV N++ +I  K     R     +A    I
Sbjct: 181 LKYVATGMGYKEIAAALFLSHRTVQNHVQNIFGKLHLNNRVELARFAYERGI 232


>gi|260578669|ref|ZP_05846577.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603166|gb|EEW16435.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 200

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 62/229 (27%), Gaps = 31/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++  +  +             G     L          LD  
Sbjct: 3   IRVLLAEDQSLVRGALIALLNAEPDIEVVAEC-----ATGTEAVALALEQPIDVALLDIE 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  + +A +          R   L    F              + +       
Sbjct: 58  MPGMNGIDAAKELAGN----------RCRCLIVTTFGKAGYVKRAMEVGVDGFIVKDTPP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R+I      E  L                  D  L+ RE E    +
Sbjct: 108 EELADAIRRVHAGLRVIDPTLAQESLL----------------TPDNPLSERETEVCQQL 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EGK+S  IA  L +S  TV N+I+SIM KT    R  A   A  N  +
Sbjct: 152 FEGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200


>gi|241661775|ref|YP_002980135.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240863802|gb|ACS61463.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 210

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++                  
Sbjct: 2   IRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEAMEQLRT---------------G 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++             L        P        I       
Sbjct: 47  AFDVVVLDISMPDRNGIDTLKLARQRH-----PDLPVLILSTFP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +        +              L+
Sbjct: 99  SGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQ--------TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G++   IA  L +S  TV+ Y   I+ K   K+ +    YA++N +V
Sbjct: 151 KREFQIFCKLARGQSVSVIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209


>gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 222

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 69/240 (28%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +       +  L  R      +           +  AL              
Sbjct: 5   PIRILLADDHRMFRQGLRELLERKGGFIIVGEASTGREVLAQAAAL-------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       + R +A +  D           +   ++             
Sbjct: 51  -RPDIVLLDIQMPEIDGVAVARQLAQTHPD--------VKVIMLTMYRQDQHLFEAIKAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +   +  +      +                + F+   +    + +L
Sbjct: 102 ARAYLLKDADADELIDVIERVHRGEAALDPTVT-------LRVFDEFRRLSIDQDAE-QL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + LT ++EG  +  IA  L +S  TV N ++ I +K     R+ A   AV+  ++
Sbjct: 154 TERERDILTLLAEGHDNRTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRGLI 213


>gi|239979006|ref|ZP_04701530.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291450884|ref|ZP_06590274.1| two-component system regulator [Streptomyces albus J1074]
 gi|291353833|gb|EFE80735.1| two-component system regulator [Streptomyces albus J1074]
          Length = 237

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 63/230 (27%), Gaps = 16/230 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           ++ R   V   P   D +AR       ++        T   G       R        LD
Sbjct: 10  EQVRVMVVDDHPMWRDAVAR------DLAEAGFAVVATAGDGPQAVRRARATRPDVLVLD 63

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +       + + +A  +             L         + +         Y   + 
Sbjct: 64  LNLPGLPGARVCQEVAGEDGP---------RVLVLSASGEHTDVLEAVKAGATGYLVKSA 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        +        +       A               LT RE E L 
Sbjct: 115 GTEELIDAVHRTARGDAVFTPGLAGLVLGEYRRLAAGPAPTRGKPDAP-RLTARETEVLR 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 174 LVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 223


>gi|171915509|ref|ZP_02930979.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 209

 Score =  118 bits (296), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 75/240 (31%), Gaps = 38/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       ++   +    +  +                    G     L R 
Sbjct: 4   KIRVLVVDDHAMMRLGLTEAISGERDMILVGEASN---------------GTQAIQLYRE 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      ++ + + L               +   VF    +        
Sbjct: 49  HQPDVVTMDFKMPGQDGAEITKQLRLE--------FPDARVVLLTVFEGEEDIWRAVQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y S + +V  +   +  +F   +    +   ++    A  A               L
Sbjct: 101 ASGYVSKSAEVEELLEVVRRIFAGEQYFSPNVAAKLAARQARNA---------------L 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L  I  G ++ EIA  L +S  TV  +I++ + K     R+ A   AV+  IV
Sbjct: 146 TPRELQVLRHIVAGYSNKEIAAKLHMSEATVKLHISNTLDKLNVADRTQAAIEAVKRGIV 205


>gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 209

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  + +     +  L    D+   +   +           L               
Sbjct: 3   VRILIAEDQQLVRQGLVALLAVDDVTI-VGEAEDGKGAIEMARTLA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V  +   L   V +         A   
Sbjct: 48  -PDVVLMDLSMPELDGVEATRRIKQ--------VAPQVRVLVLTVANCERRVAEALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +      +      ++           +  D+  G    LT
Sbjct: 99  DGYALKKLGHGELMAAINAVCAGKTYLGPGLSEDL------VKEYLEGSDMGGGS---LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G  + EIA  LGI+  TV  +   IM+K      +   AYA+R  ++
Sbjct: 150 AREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGLI 208


>gi|223934338|ref|ZP_03626259.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896801|gb|EEF63241.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 236

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 66/242 (27%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q++ ++L  +       +  L      +  +   D                G     L 
Sbjct: 11  VQRITVLLADDHTVVRQGLKALLIVEGDIEIVGEADT---------------GRHAVQLA 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +  L     +D  +      +  R +           +     L    +           
Sbjct: 56  KKLLPDVVVMDIAMPLLNGLEATRQITKQ--------VPSSKVLILSSYSEDEYVQQLTE 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +   +             +          F S      ++ 
Sbjct: 108 AGAAGYLVKQTAANDLLKAIREAYKGNAFFSPSIAKRLR---DQCREAFVSGQPVRKRND 164

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EG+ + +IA  L IS  TV  +   +M K      +G   +A+   
Sbjct: 165 YLTTREAEVLQLIAEGQANKQIAAELCISIKTVEKHRQQVMNKLNIHDVAGLTRHAISKG 224

Query: 245 IV 246
           I+
Sbjct: 225 II 226


>gi|319947541|ref|ZP_08021771.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746229|gb|EFV98492.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 211

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D     + L   +S    +  + E   G     L   +      +D ++      
Sbjct: 4   LLLVDDHEMVRLGLKSYLSMQDGVDQVLEASDGQEGVELALQERPDVIIMDIVMPHMTGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +     D           L    +    +           Y   T     I   +
Sbjct: 64  EATLAILKDWPD--------AKILILTSYLDNEKIYPVLDAGAKGYMLKTSSAEEILRAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +   ++     +                +LT RE + L  +++G  + 
Sbjct: 116 HKVEQGELAIETEVSQKVEYRKNHVELH-----------DDLTARERDILALLTKGYENQ 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 165 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 206


>gi|239944642|ref|ZP_04696579.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991106|ref|ZP_04711770.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448106|ref|ZP_06587496.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351053|gb|EFE77957.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     +  S L    D +  +   +           L               
Sbjct: 3   IRVLVADDQAVVRTAFSGLLNTQDDIEVVGEAEDGEQAVAGAAEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D  R +  +              L    F              
Sbjct: 48  RPDVALLDIRMPRLGGIDAAREIVAASNG-------ATRALMLTTFGLDEYVYDALTAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++  +    +      +    +           LT
Sbjct: 101 SGFLLKDATFPELLHAVRVVAGGHALLAPEITGRL----IAEFARQRVSAPPKRSIEGLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G ++ +IA  L I+ +TV  +I  +  K   + R+ A+  A    +V
Sbjct: 157 AREAEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215


>gi|329733822|gb|EGG70146.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU028]
          Length = 218

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    + +  +      V    ++                  
Sbjct: 1   MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLE---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++           +  +   K          L   +F              
Sbjct: 45  ----HRPDVLILDLSMPPGESGLIATS--KISESFPETKILILTMFDDEEYLFHVLKSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++ + +  ++     +       + +      +              L+
Sbjct: 99  KGYILKNSPDEQLILAVRTVYQGETYVDMKLTTSL-VNEFVNQSQTDEVSPSSDPFKILS 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 158 KRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|239932624|ref|ZP_04689577.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440983|ref|ZP_06580373.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343878|gb|EFE70834.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +       +    +  L              
Sbjct: 2   PVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +       V + P  L    F             
Sbjct: 48  -RPDVVAMDVRMPLLDGIEATRALLRT-------VEEPPKILVVTTFENDEYVYEALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    +  +   A Y  +          +   L
Sbjct: 100 ADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRRLA--AEYGDDGGNRAARDVLERARL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +S  TV +++++++ K   + R+ A+  A  +  V
Sbjct: 158 TEREAEVLRLMARGLSNAEIAARLVVSTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|187927253|ref|YP_001897740.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|309780047|ref|ZP_07674800.1| response regulator transcription regulator protein [Ralstonia sp.
           5_7_47FAA]
 gi|187724143|gb|ACD25308.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|308921217|gb|EFP66861.1| response regulator transcription regulator protein [Ralstonia sp.
           5_7_47FAA]
          Length = 210

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++                  
Sbjct: 2   IRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRT---------------G 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++             L        P        I       
Sbjct: 47  AFDVVVLDISMPDRNGIDTLKLARQRH-----PDLPVLILSTFP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +        +              L+
Sbjct: 99  SGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGGLEKPTDQPLHQ--------TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G++   IA  L +S  TV+ Y   I+ K   K+ +    YA++N +V
Sbjct: 151 KREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMKSNADLTYYAIKNGLV 209


>gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 220

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 75/241 (31%), Gaps = 28/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ IV+  +       ++ L      +  +            +               
Sbjct: 1   MNRIRIVIVDDHALVRMGLTTLICDRPDMQVVGEASNLTQALRVIEET------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   +D  +  +   +  R +             +   +    +      +    
Sbjct: 49  ---QPQIVLMDIRMPGESGIEATRQIVQR--------FPQTRVIILTSYSDDELVMRAIH 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     D   +   +  +     ++       +     +   M +  + +  +D 
Sbjct: 98  AGASGYVLKQADNDVLLDAIQTVARGESLLDPATTTRL---LHFVREMERKAEQNAFRD- 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+  L  +++GKT+ EI   L +S  TV N+++ I+ K     R     YAV ++
Sbjct: 154 -LSERELSVLAELAKGKTNAEIGRTLHLSEKTVRNHVSVILEKLHLSNRVELATYAVEHH 212

Query: 245 I 245
           I
Sbjct: 213 I 213


>gi|254485722|ref|ZP_05098927.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           GAI101]
 gi|214042591|gb|EEB83229.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp.
           GAI101]
          Length = 239

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 21/237 (8%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
            T   +LA +   D          AL  ++G +H +    D   +Q         +  + 
Sbjct: 5   LTLDQILAALEKTDTLDGLQTATEALRTFLGVAHIVYHWVDSAGDQYG----CGTYSPEW 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----------ITPPAG-MDNRYCSLTF 135
                     +   V+    + F PV     +                G  +  +     
Sbjct: 61  RSRYLDQNYLRVDPVVSGCFQRFHPVDWKRLDWSSKAARALLTEAIDHGVGNQGFTVPIR 120

Query: 136 DVARIRIGLML----LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGR 189
                     +         +   +    ++ L+A Y       ++     +    L+ R
Sbjct: 121 GPNGQFALFTVNDNCTDDAWQAFTQANRRDLILIAHYFNQKALEFEPGRTPEVAQALSPR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ +T ++ G    ++A  L IS +T+  YI S   K      + A+A A+   ++
Sbjct: 181 EIDAMTLLAIGYNRAQVADSLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLI 237


>gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 223

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     +  + E   GA    + R +      LD  +    
Sbjct: 11  TRILLADDHALVRRGVRLILDGEPDLQVVAEAGDGAEAIEMARSERPDLAVLDIAMPRLT 70

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +          V+     L   ++              + +   +     +  
Sbjct: 71  GLQAAREL--------SRVMPELRILMLTMYDNEQYFFEALKAGASGFVLKSVADRDLVE 122

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      +    +  +        +  +       +    T RE E L  ++EG +
Sbjct: 123 ACRAAMRDEPFLYPGAVTALI---RNYLDRVRDGGDVPDRAI--TEREEEILKLVAEGHS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EIA +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 178 SKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 221


>gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 191

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 14/188 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G +   L    +     +D ++      + +R +          V  R   +    +H  
Sbjct: 8   GENATDLAAELVPDIVLMDLVMPGISGVEAIRMIKQ--------VSPRSQVIVLTSYHED 59

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y     +  ++   +        I+       +         +    
Sbjct: 60  EYIFPALRAGAISYVLKDIEPNQLVETVRRGVQGESIMHPRVAARV------VNEIRAMK 113

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   EL+ RE+E L  I+ G T+ EIA  L IS  TV  ++++I+ K     R+ A
Sbjct: 114 QASPDPFSELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKA 173

Query: 237 IAYAVRNN 244
             +A    
Sbjct: 174 AVFAWEQG 181


>gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1]
          Length = 228

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 69/241 (28%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+ ++L  + E   + +  +    D    +            +                
Sbjct: 12  EQIRVLLVDDQELIRTGLRRILRVRDGFDIVGECADGSEVLAGIAE-------------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  + +         +            + P  L    F            
Sbjct: 58  -HRPDIVVMDLRMRNIDGITATTMVQSLR--------EPPPVLVLTTFDDDVLLSRVLRA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +         +   +  +   G  +       +           ++         E
Sbjct: 109 GAAGFILKDSPAEALIWAVRAVVRDGAFLDPAVTERV------LQGFRRAGREQVPVAPE 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G+T+ EIA  LGIS  TV +++  I  K   + R+ AI YA  + +
Sbjct: 163 LTDRESDVLRLIARGQTNTEIASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYAFDHGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +       +    +  L              
Sbjct: 2   PVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +           P  L    F             
Sbjct: 48  -RPDVVAMDVRMPLLDGIEATRALLRT---VDDP----PRILVVTTFENDEYVYEALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    + ++   A Y             +  +L
Sbjct: 100 ADGFLLKRARPAEIVHAVRLIAEGDSLLFPASVRQLA--AEYGDEGGNRAARAAMERAQL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 158 TEREAEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 231

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 79/249 (31%), Gaps = 33/249 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q NI+L  ++      V        D   ++                        + +++
Sbjct: 4   QANILLVDDEPGVRESVQAYLEYADDFQVQVASHANQ-----------------AWEILQ 46

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +       D ++     +  ++ +    + +   V+               + I     
Sbjct: 47  KNPPDLVISDIMMPEVDGYQFLKKLRDDPRYEAIPVVFLTARGMTT------DRIQGYNA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILR---------DRLWEIGLLAAYQANMFKSY 176
             + Y S  FD   +   +  L  + +   +         +   +I  +     +     
Sbjct: 101 GCDAYLSKPFDPEELEAIVKNLLERRKATSQANTDASQLAEIAQDIREIKKKLGDSESLA 160

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  
Sbjct: 161 TTPPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTEL 220

Query: 237 IAYAVRNNI 245
           + +A+++ +
Sbjct: 221 VRFALKHGL 229


>gi|297191286|ref|ZP_06908684.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718427|gb|EDY62335.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     + +  + T ++ +  +                    GA    L    
Sbjct: 3   IRVVLADDQPLVRAALQMVITEAEGIEVVGEARD---------------GAEAVALAEEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       +         +    F              
Sbjct: 48  RPDVVVMDIRMPGTDGIEATRQITERHDGTH--------VIVLTTFDDDDCVYGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  I   + ++     +I       +      +     +      +   +T
Sbjct: 100 AGYLVKDMALDDILAAVRVVAAGDGLISPAVTRRL----IREFAGRPAGAGPKRELAGIT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +  G ++ EIA  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 156 DREREVLTLVGSGLSNSEIAEALFISVATAKTYVTRLLSKLGARDRVRLVIIAYETGLV 214


>gi|300214009|gb|ADJ78425.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 218

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 9/214 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  + +       +    D        +EQ+ D I+      ++   
Sbjct: 4   VLIADDQKLIRESLKIVLDTYQDIQVIDTVGDGKQVLESIKEQEPDVILMDIRMPNMDGT 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           ++     + Y  ++    +    F       +      + Y         +   +  ++ 
Sbjct: 64  VSTKLVKQSYPHIKI---IILTTFDDDDFIFSALKYGASGYILKGVSPTELHDAITTVYN 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  L +  A      DV       +T  E   +  +  G ++ EI+  
Sbjct: 121 GGSMINPNIAAKVVKLFSKMAQSDFEIDVDKEGAALITDAEWRVIYQVGRGLSNKEISQE 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S  TV N+++ I+ K   + R+    +AV+N
Sbjct: 181 LFLSEGTVRNHLSHILSKLNLRDRTQLAIWAVQN 214


>gi|239816565|ref|YP_002945475.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803142|gb|ACS20209.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 235

 Score =  118 bits (295), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 82/239 (34%), Gaps = 25/239 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +D      +SH+      LA +      ++W   + A  E +GA  F +       
Sbjct: 18  LVVEDDPAMRERLSHV------LATLSHAAPQIAWADSIAAAKELLGAQSFGIA------ 65

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      +L+  M          V+                           Y
Sbjct: 66  --LVDIGLPDGSGVELIGWMQAQHPKVPAVVISAFRTEDVIF--------AALRAGAIGY 115

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGK--DFELT 187
                D   + I L  +   G  I        +G LAA Q +                LT
Sbjct: 116 LLKDRDDLELGIALRSIEQGGSPIDPAIARHILGWLAAQQPSPPAVSAADAPAALPVALT 175

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  +++G ++ ++A  L ISR TV  +  +I RK A  +R+ A+  A R+ ++
Sbjct: 176 PRERRILELVAQGLSNRDMAESLSISRLTVECHTKNIYRKLAVSSRTEAVYQARRHGLL 234


>gi|315646683|ref|ZP_07899799.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
 gi|315277889|gb|EFU41212.1| two-component response regulator yhcZ [Paenibacillus vortex V453]
          Length = 213

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 16/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D L  +  L   +     +  + + + G                +D ++      
Sbjct: 5   VLIVDDHLVVLRGLRYFLQTQPMIEIVDQALNGREALAKAEMLQPDVVLMDLMMPEMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 +    F      +         Y     +   +   +
Sbjct: 65  EATKRITSE--------FPHIKVIILTSFADRDSVLPAIKAGAIGYQLKDIEPKVLVETI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +      R++      ++            +          LT RE   L  I+ G+++ 
Sbjct: 117 VAAVNGNRMLHPQVTNQLI-------AHVATDGEAAKGIDILTKREQHVLEQITMGRSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIAV L I+  TV  +I  I+ K   + R+ A  YA+RN+ 
Sbjct: 170 EIAVELHITEKTVKTHITHILGKMEVQDRTQAALYAIRNHW 210


>gi|315080757|gb|EFT52733.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 228

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q        V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQG-----GTVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|302869854|ref|YP_003838491.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
 gi|302572713|gb|ADL48915.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029]
          Length = 225

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 7/204 (3%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 +    E VG +  +            D ++      D      L    + +  +
Sbjct: 29  AGVRAELGTRVEVVGEASSVAEAVTRIAATAPDVVLLDVHMPDGGGRAVLEAMRRTHPQV 88

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +        V     + I         Y + T     +   +  +     +        +
Sbjct: 89  RFL---ALSVSDAAEDVIGLIRAGARGYVTKTISPEELTGAIRRVADGDAVFSP----RL 141

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                          V   +  +LT RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 142 AGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 201

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     R     +A    +V
Sbjct: 202 NVLRKLQMSNRYELSRWAADRRLV 225


>gi|329903906|ref|ZP_08273628.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548191|gb|EGF32899.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 214

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + L R++     +             G      VR   F    LD  
Sbjct: 2   IRLLIADDHTIMREGLKRILEGADDIDVVGEA-----VDGFEVLAQVRKGGFDLLMLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+R +             R   L   +       I         Y +     
Sbjct: 57  MPGRSGVELIRQIKDEA--------PRLPILILTMHEEEQYAIRAIRAGARGYLTKESAG 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  +      I  +   ++ + A                  +L+ RE E  + +
Sbjct: 109 TQLLSAIRKVASGRPYISNEVAEQLAMDAM--------PSDDDYPHKKLSDREFEVFSLL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GKT  +IA +L +S  TV+ +   I+ K    + +  + YAV   ++
Sbjct: 161 VSGKTITDIADMLHLSAKTVSTHKTRILHKMGMSSLAELVQYAVACRLL 209


>gi|289644902|ref|ZP_06476947.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289505287|gb|EFD26341.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 222

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V + L  + E     +  +   +  +  +           R+               
Sbjct: 1   MDPVRVFLLDDHEIVRRGIREVLEDTGEIRVVGEASSVSEALRRI--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD+ +      D+ R +  +       +L          +           
Sbjct: 46  PASNPQVALLDARLEDGSGIDVCRDIRSAHPQVGCLIL--------TSYDDDDALFASIM 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +     ++      +            +       +  
Sbjct: 98  AGAAGYLLKQIKGTDLVGAIHTIASGRSLLDPAVTQK-------VLARLREGPAEDSRLA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE E L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  YA + 
Sbjct: 151 TLSEREREILLLIAEGLTNRQIASRIHLSDKTVKNYVSAILDKLELTSRTQAAVYATKL 209


>gi|172039086|ref|YP_001805587.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700540|gb|ACB53521.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 265

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 71/270 (26%), Gaps = 47/270 (17%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            ++ ++++VL  + +     +     + + +  +                    G     
Sbjct: 16  LKMSKISLVLVEDHDLTRVGLLAALKQVEQIEVLGEAAN---------------GHQGVK 60

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +++ +      +   +      ++ + +      K          L         + +  
Sbjct: 61  IIKEENPDLAIVALNLPDIDGIEVTQRL------KNDPHTHSTRILILTNTTQEKDVLAA 114

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +  ++   +         I  +    +                    
Sbjct: 115 FVAGADSYLLKDIEFTQLIEAIKNTHEGNSWIDPNIANIVLQQIKKPVTAKAELSSVSVN 174

Query: 183 D--------------------------FELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                                        LT RE + L  I  G  + +IA  L I+  T
Sbjct: 175 HSSNNNHSVQLEETTCIEEDPQHLFEISPLTDREFDVLELIVGGCNNADIAEKLCITVGT 234

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++ +I+ K     R+ A   A+R+ +V
Sbjct: 235 VKTHVRNILNKLCVDDRTQAAVRALRSGLV 264


>gi|307327036|ref|ZP_07606226.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887334|gb|EFN18330.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 229

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 10/224 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G      VR        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEIVAEAGDGVEALQAVRSTEVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   E             +    F       +        +       A +   
Sbjct: 64  VEATRLICEREGAP--------KVIILTTFDLDEYAFSALKAGAGGFMLKDVPPAELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +     ++       +    A        S      +   LT RE E +  +++G +
Sbjct: 116 IRAVHSGDAVVAPSTTRRLLDRFAPMLPGGGGSGGRVRPELERLTDREREVVLLVAQGLS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 176 NGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 219


>gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 233

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 19/232 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D++   +      ++   +  L   +G                       ++P       
Sbjct: 2   DIIDLSVVASDDANFLEYLDQLCARLGFDFASYATTSPMTGAVQGYA---NYPDSWKMHY 58

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM----------DNRYCSLTFDVARI 140
                 +    + +      PV     E       +                        
Sbjct: 59  MRRNLHRVDPTIHKSALSIAPVDWARFERDERFRAVFFAAEDFGITPQGLTVPVRGPYGD 118

Query: 141 RIGLMLLFP----KGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECL 194
           R  L +           + R  + ++ + A +  +     D      +   L+ RE+E L
Sbjct: 119 RGLLSVTRRCPRSDWDKLKRAAIGDLQVAAVHLHDAVMRSDVISRALRQPRLSTREIEVL 178

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W++ GK+  +I  ILGIS  TV  ++ S   K  T +   A+  A+   +V
Sbjct: 179 QWVAAGKSQMDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLGLV 230


>gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 68/230 (29%), Gaps = 24/230 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
              + +  +    D       +   ++    M  + E   G       +        +D 
Sbjct: 1   MTLAPILRILVVDDHPLMRSGIAGEINGQPDMRVVAEASDGEEAIAAFKLHRPDVTLMDL 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + +R +                 +         + +         Y      
Sbjct: 61  RMPGIGGIEAIRRIRTD--------FPISRFVVLTSSAGDVQVMRAFQAGATGYLLKNLL 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++    R +  +       +A Y                  + RE+E L  
Sbjct: 113 RTELIDTIRVVHAGRRRMPPELA---QQIAEYAMEDAV------------SPRELEVLQE 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S GK++  +A  L IS +TV N++ SI+ K     R+ A+  A+R   +
Sbjct: 158 VSRGKSNKIVAGDLNISEHTVKNHLKSILSKLDASDRTDAVVIAIRRGYI 207


>gi|302869712|ref|YP_003838349.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503806|ref|YP_004082693.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302572571|gb|ADL48773.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410425|gb|ADU08542.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 215

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 17/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + +AR +               T   G     +          LD  
Sbjct: 3   IRVMVVDDHPMWREGVARDLTEAGHQVVA------TSGEGRQAVRVAAAARPDLVVLDLQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++R +           L     L           +         Y   +   
Sbjct: 57  LPDISGVEVIRGLRA--------ALPDVRVLMLSASGEPQGVLDAVKAGATGYLIKSAAP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A     +        +         GL+      +             LT RE E L  +
Sbjct: 109 AEFLDAVRRTAAGEPVFTP---GLAGLVLGEYRRLAAEPPAPHDDAPRLTERETEVLRLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G +  +IA  L +S  TV N++ + + K     R     YA+   +
Sbjct: 166 AKGLSYKQIADRLSLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 213


>gi|256822428|ref|YP_003146391.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256795967|gb|ACV26623.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 212

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S       + E   G            Q   +D  +     
Sbjct: 3   RVMLADDHTILRQGLVSLLSKDADCTVVAEASNGLEAVEKALETRPQVAVIDISMPELNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++V+ +           L     L   +       I       + Y         +   
Sbjct: 63  MEVVKRIHDK--------LPECKILVLTMHEEQEYVIHMVRAGASGYLLKDSASEELIDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L        +     +           +           LT RE E    + +GKT+
Sbjct: 115 VKALATGKTYYSQYAASVLAT------QYSQPDKEWQDPYKNLTQREREVFHLVVDGKTT 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS  T  N+   ++ K      +  + YA ++N++
Sbjct: 169 KDIARTLDISVKTAENHRGKVLDKLGVSNTAELVRYAAKHNLL 211


>gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 226

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 26/229 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE---------YVGASHFLLVRWDL--FQEQKL 74
           LP  +D+  ++  ++   +    +                G++   LV+          +
Sbjct: 9   LPEHADVSTKIAIVEDNATLRQYLAEFVAGAPGNRCVCACGSAEEALVKIPSLNPDVVLM 68

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +  +        +           L     +   V+                Y    
Sbjct: 69  DIHLPGESGIVCTARLREK--------LPNLQVIMLTVYKDTKMIFQALKAGACGYVLKR 120

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   I   +  +   G  +  +       +A      F +      +  +L+GRE E L
Sbjct: 121 SDDKEILEAIAEVRAGGAPMTSE-------IARMVVRSFIADTPEKDETGQLSGREQEIL 173

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             ++EG ++ EI   L IS  TV  ++  I  K   + R+ A A  +R+
Sbjct: 174 ALLAEGLSNKEIGSKLNISFTTVRTHLMHIYEKLHVRCRTEAAAKYLRS 222


>gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 231

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 17/228 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           A+++ +D        +    +  G     +      WDL Q+   D +  SD     V  
Sbjct: 3   AQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLV-ISDVMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL-MLLF 148
               ++ +     Q    +F        + I       + Y    FD   +   +  LL 
Sbjct: 62  YQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLLT 121

Query: 149 PKGRIIL-----------RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +                 +   +I  + A                 +LT RE   L  +
Sbjct: 122 RRNSKPPKTTEEGETPDIAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLV 181

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 AEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|269961706|ref|ZP_06176067.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
 gi|269833571|gb|EEZ87669.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
          Length = 212

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++V+  + +               +AR+  L+  +         T   G     + + 
Sbjct: 4   PISVVIVDDHQVVL---------DGFMARL-ELEPDIDVIG-----TASNGLEAIEVSKV 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +                 L   +       +      
Sbjct: 49  LNPDVILMDISMPIMNGIEATGMIKEER--------PESKILMLTMHDNREYIMKVMQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        ++   +  +              +           +       K   L
Sbjct: 101 AVGYMLKEISADKMVQAIKTVNQGSTYFCESVTQTL---------FTQDVVPAAQKPNPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA    ++
Sbjct: 152 SRREEAVLKLVAQGNSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAFETGLI 211


>gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
 gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans']
          Length = 240

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           ++    ++F+     + ++    + + SD+P   +         K   V+      F P 
Sbjct: 31  SDLFTFAYFM-----MNKDDGQPAFMISDYPAGWLNQYRNYGYQKIDPVMLIACRKFTPF 85

Query: 113 FH----TLPEN----ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--- 161
                  +P+     ++    +DN Y     D       L +   K   +  D + +   
Sbjct: 86  SWKNNPNMPDQNFYKMSSDYALDNGYTFTLHDPDNNLATLTISQMKQNAVFYDIIEKEKD 145

Query: 162 -IGLLAAYQAN--------MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              +L                +       +   L+ RE E L W S GKT +EI+ IL I
Sbjct: 146 KFQMLLITTHEKVIRFFDARKEQGSESEEEPCRLSPREKEVLFWASVGKTYNEISTILSI 205

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              TV  +I +I+ K        AI  A+   ++
Sbjct: 206 REGTVKFHIRNIINKLGVANAKHAITRAMELKLL 239


>gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 209

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 33/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     VS   +  + L                       G     L    
Sbjct: 2   IQVLIVDDHETVRMGVSAFLSTQEDLHVAGEAAN---------------GEEGVKLALQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  + +  +          +   +    F    +         
Sbjct: 47  KPDVILMDLVMDGMDGIEATKQIKANW--------PQAKIVVVTSFVDSDKLRPVLEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T    +I   +   +    ++         +++A+ AN+             LT
Sbjct: 99  TSYVLKTSSAMQIAEAIRKTYNGESVLDAKVQG--QMISAFTANVPLHQA--------LT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +SEGKT+ +I+  L I+  TV  +++ I+ K   + R+ A+ YA++  +
Sbjct: 149 KRELEILKLMSEGKTNQQISEELYITIKTVKTHVSHILAKLEVEDRTQAVIYALKEKL 206


>gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 210

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D      +    +  D L  +   +                G S        
Sbjct: 1   MRILIVEDDPLMQLGLEQALSDHDDLEIVGQAED---------------GYSGVQKALEL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +           L     +         E +   +   
Sbjct: 46  NPDLIVMDIGLPRLDGIAATKQIKEE--------LPHVHVVMLTSHTQQTEVVAALSSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC     + R+   +         +       +        N+         K   L+
Sbjct: 98  DAYCVKGASLDRLMAAIDAAKDGATYLDPQIARLV------LGNLKAPAPQQNLKISNLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 152 ERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210


>gi|300863456|ref|ZP_07108411.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338519|emb|CBN53553.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 244

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 75/258 (29%), Gaps = 31/258 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++++ L  +     + +       + L  +                    G     L+
Sbjct: 1   MNKISVALIEDHHLTRAGIKAALEDCEELQFIGEAAN---------------GLQGITLL 45

Query: 65  RWDLFQEQKLDSIVSS-DWPFDLVRCMAL-SEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                    +D  +       +L +      +  +  +V  +P  L   +       +  
Sbjct: 46  EKTRPDVAIVDIGLPGLIDGIELTKRFKEYIQTAQTQSVDNQPKVLILTMQDNEESVLAA 105

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A   + YC       ++   ++        I       +            +       
Sbjct: 106 FAAGADSYCMKDVSFEKLVEAVVETNAGENWIDSSIARIVLARMNNPFKEAVNSATISTV 165

Query: 183 DF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT RE E +  I EG +++EI   L IS  TV  ++ +I+ K 
Sbjct: 166 SINGVEPEYSHLLMANPLTEREKEVIELIVEGCSNEEICKQLYISLGTVKTHVRNILNKL 225

Query: 229 ATKTRSGAIAYAVRNNIV 246
           +   R+ A   A+R  +V
Sbjct: 226 SCDDRTQAAVRALRAGLV 243


>gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family
           [Leptospirillum ferrodiazotrophum]
          Length = 219

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 11/228 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P     L   +     ++      +  E + A            E+  D +V
Sbjct: 3   RVFLVEDHPLMRQGLVAALGQVPEIAILGEAESGEEALAALLPPEGETPPPAERTPDVVV 62

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L               L+        +   +    +      + YC    ++ 
Sbjct: 63  MDIGLPGLSGIETTRRLKAARPDLRILMFTVHQLEGEIFGAFSS---GADGYCLKDSELD 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            + +G+  +      +             + A            +  L+ RE E L  ++
Sbjct: 120 SLILGIQAVALGSLYVDPRIA--------HLAIRRILSSPAPETETPLSARETEVLRLLA 171

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG+++ +IAV LGIS +TV  +I SI+ K +  TR+ A   A R   +
Sbjct: 172 EGQSNRDIAVALGISVSTVKAHIQSILVKLSAATRADAAVKAFRKGWI 219


>gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 234

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 78/240 (32%), Gaps = 23/240 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +  L   ++  A +  +         +  + E  G          
Sbjct: 16  LNIMIVDDHPVVRVGLQALIETAEDAAGIDVVASIADPDEAVVQVRELQGTEQ------- 68

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 +D          +L      ++         +        + T  + +   +  
Sbjct: 69  EIDVVLMDLRFGEGPAGTELAGGARATQAICAIPDGPQVLV--VTNYSTDQDVVGAVSAG 126

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       +++  G+        ++  + + ++                       L
Sbjct: 127 AVGYLLKDAPPSKVLDGIRRAARGESVMAPEIMGKL-------------MGQMTNPTEAL 173

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  + EGK++ +IA  L ++  TV ++++ + RK     R+ A+A A +  I+
Sbjct: 174 TPRELEVLALVGEGKSNRDIARHLVLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGII 233


>gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 262

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 80/260 (30%), Gaps = 18/260 (6%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLA--RMIPLDCTVSWTMRMYALTEYVGASHFL 62
           ++ V+   + +D+ R    S            R+       S           +G  H++
Sbjct: 1   MKHVSRRRSNDDQHRPPPTSGRAQGGAPAPAMRLAYATDITSLVESFGHEAGKLGFPHYM 60

Query: 63  LVRWDLFQEQKLDSIVSSD----WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-- 116
           + R    +               +P D VR     +      V +       P       
Sbjct: 61  ISRVTRSRSTSTRRTALEMIGARYPQDWVRYYQRRDYASTDPVHRAAFLQSAPFRWHDII 120

Query: 117 --------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                     +    AG+               +   L  P   +          L++  
Sbjct: 121 GLSKAERRLLDEAGEAGLRAGLSIPVHQSDGSILLFNLSGPLRSVNDTINSRLAYLISVQ 180

Query: 169 QANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                    +   +     LT R++ECLTW++ GKTS EI  ILG SR TV  +I   M 
Sbjct: 181 FHYELHRLALIPSRRMAHLLTARQLECLTWVARGKTSAEIGEILGRSRYTVEFHIKEAMD 240

Query: 227 KTATKTRSGAIAYAVRNNIV 246
               ++R+ A  +A    I+
Sbjct: 241 ALNIRSRTAAAVHATVQGII 260


>gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 191

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 61/211 (28%), Gaps = 22/211 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++     +             G     L          +D  +      +  R +  +  
Sbjct: 2   ILGAQADMEIVGEA-----ANGREAVELAEQLRPDVVVMDVAMPELNGIEATRRLVAAN- 55

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +   +                 Y         +   +  +      + 
Sbjct: 56  -------AHAKVIALSMHKDSVYVREILRAGARGYLLKDSGAGELVTAIRAVAGGESYLT 108

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                     +    + ++           L+ RE E L  ++EGKT+ EIAV+L +S  
Sbjct: 109 PAV-------SNAVLDDYRK--HVTNPIDLLSSREREVLQMLAEGKTNKEIAVVLNLSVY 159

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV+ +   IM K    + +  + +AVRN +V
Sbjct: 160 TVDAHRGRIMEKLNLHSINELVRFAVRNGLV 190


>gi|15894734|ref|NP_348083.1| two-component system regulatory protein [Clostridium acetobutylicum
           ATCC 824]
 gi|15024399|gb|AAK79423.1|AE007657_3 Two-component system regulator (CheY domain and HTH-like
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325508872|gb|ADZ20508.1| Two-component system regulator (CheY domain and HTH-like
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 225

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 75/218 (34%), Gaps = 10/218 (4%)

Query: 36  MIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +       E VG +       +  ++ K D I+      ++   
Sbjct: 4   VLIADDQELIRQSLKIVLSANKDIEIVGTACNGNEVVESVRKYKPDVILMDVRMPEMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                  + Y  ++    +    F              + Y      +  +   +  +  
Sbjct: 64  QCTKVIKESYPNIKI---IVLTTFDDDEYIFNALKYGASGYLLKGVSMDELVRAIHTVVN 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
            G +I  D   ++  L +  A    S      K+ + +   E   +  +  G ++ EIA 
Sbjct: 121 GGAMINPDITAKVFKLFSQMAQGDISIQAGTKKNTDDICDAEWNIIKCVGFGLSNKEIAK 180

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV NY+++I+ K   + R+    +AV+  ++
Sbjct: 181 KLRLSEGTVRNYLSNILNKLNFRDRTQLAIWAVQTGVI 218


>gi|256378098|ref|YP_003101758.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922401|gb|ACU37912.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 225

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 73/246 (29%), Gaps = 25/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   + V +V+  +     + +  +    + +  +   +        + A+        
Sbjct: 1   MSVVGRPVRVVIVDDQPLIRAGLGMVLGAQEDIEVVGEAEDGARALEVLSAV-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +  R ++                L    F T  +  
Sbjct: 53  -------RADVVIMDIRMPVLDGVEATRRLSALPDSP--------KVLVLTTFDTDEDAF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +             + ++     ++       +  L  +   +  +     
Sbjct: 98  AALRAGASGFLLKNSPPEDTLNAIRVIAAGDAVVAPRVTRRL--LDRFAGRLDTAPAPAD 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E L  ++ G ++ E+A  + ++  TV  ++  ++ K   + R  A+  A
Sbjct: 156 DRLDVLTEREREVLVLVARGLSNVELAERMHVAEATVKTHLGRVLTKLGLRDRVQAVVLA 215

Query: 241 VRNNIV 246
               +V
Sbjct: 216 YELGLV 221


>gi|322688905|ref|YP_004208639.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460241|dbj|BAJ70861.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 299

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 69/301 (22%), Gaps = 71/301 (23%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N     R              A +I     +    +        GA    L        
Sbjct: 4   MNESRSIRVIIADDQELVRAGFAMVIGSQPDMEVVGQA-----SDGAQAVALAESLHPDV 58

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKY-----------------YNVLQRPTELFCPVFH 114
             +D  +      +    +                             +    +    F 
Sbjct: 59  VLMDVRMPGMDGIEATSRITSLSAAPDNAADSASPAADATVSAESADDRPTRVIILTTFD 118

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY------ 168
                +       + +     +   +   +  +F    II       +            
Sbjct: 119 LDEYVMAAINAGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMQDGYAQH 178

Query: 169 ----------------------------------------QANMFKSYDVHWGKDFEL-- 186
                                                    A+   +       D EL  
Sbjct: 179 GSLTGDVARSGAVYGSAVGVSGGAAGNGAGSMTGIPSPAGAASDGSNTSRPAYTDPELDL 238

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N +
Sbjct: 239 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 298

Query: 246 V 246
           V
Sbjct: 299 V 299


>gi|297197789|ref|ZP_06915186.1| two component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197716622|gb|EDY60656.1| two component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +    E   G +    VR        +D  +     
Sbjct: 3   RVLLADDQSLVRAGFRALLDAQPDIEVAGEAPDGEAALRKVRELRPDIVLMDIRMPLLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L+    +    F              + +     +   +   
Sbjct: 63  LAATRRITE------DTALKEVKVVMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +      +           G    LT RE E +  +  G ++
Sbjct: 117 VRAVVDGDALLSPGVTRRL----IAEFAARSKEPEAEGALAGLTEREREVMALVGIGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 173 EEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 214

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + +  + E   + +     R D +  +           R+ AL            
Sbjct: 4   MEKIRVFVLDDHEIVRNGLRQTLARHDDIEVVGEAGLAAEALRRIPAL------------ 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D+ R +  +       +L          +       +   
Sbjct: 52  ---HPHVAVLDGRLPDGSGIDVCREIRSALPGVACLIL--------TSYDDDEALFSAIM 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +     ++                   +          
Sbjct: 101 AGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRR-------VLERLRDGPHEDPAMA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ 
Sbjct: 154 TLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 212


>gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676]
 gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676]
          Length = 214

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 13/211 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +I +   +             G     +    +     +D  +           MA    
Sbjct: 16  IIEMQDDMEIVGECKD-----GKEAIKIALETVPDMVIMDIQMPDISGI-----MATKNI 65

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                  +         F      +         Y     +   +   +  +     I  
Sbjct: 66  MSILPNTKVVL---LTTFDVQQYVLDGIRAGAVGYILKDTETEEMLDSIRAMNRGAMIYN 122

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                +       Q N +   D        LT RE++ L  ++ GK + EIA IL +S  
Sbjct: 123 STTANQAFTHFIKQENDYNLADEELEYKEALTKREIDVLQLLAYGKQNHEIAKILFVSDG 182

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  +I +I++K     R+ A   A+R  IV
Sbjct: 183 TVKTHIHNILQKLDVTDRTQAAVMAIRKKIV 213


>gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 216

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +       +  L +    +  +                    G +   L 
Sbjct: 1   MDNIRVLLADDHAVVREGLKALISAEPGMELVGEASD---------------GRAAVTLT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      ++   +     D+          L   V            
Sbjct: 46  TELDPDVVVVDVSMPELNGAEVTAHLRAERPDR--------KVLALTVHEDRGYMRRLLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       + +   +  +   G  +         L     + +        G   
Sbjct: 98  AGAAGYVLKRAAPSELVQAIRAVAGGGTYLDP------ALATGELSEVNDPARDAGGTGA 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E +  I+ G ++ EIA  L +S  TV  Y    M K   +TR   + YA R  
Sbjct: 152 DLSERETEVVRLIALGYSNKEIAGRLKLSVKTVETYKTRSMEKLGVRTRVDIVQYAARRG 211

Query: 245 IV 246
            +
Sbjct: 212 WL 213


>gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 251

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 28/238 (11%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCMA 91
           +          +++A T  +G    +     + +  + + I  S     + P D+ R   
Sbjct: 12  LRETTVDGAFDQLFAQTSRLGFDALIYDYTPVPRSLEGELITPSLLRMCNVPGDMQRLWL 71

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENI------------------TPPAGMDNRYCSL 133
            +   +   V     E   P   +                            M +     
Sbjct: 72  ENGYYQVDPVQHYALESCAPFVWSYQRPDNTSLQNRLSDLNKPVTHYMCDNNMPSGATVP 131

Query: 134 TFDVARIRIGLMLL--FPKGRIILRDRLWEIGLLAAYQANM---FKSYDVHWGKDFELTG 188
                   + +  +       + + D L E+ LLA              +   +   L+ 
Sbjct: 132 LHLPNGGFVTVTGIHTGAGHELDIHDVLAELSLLALTFQECVFPLFDSSILTCRHVRLSK 191

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE ECLTW +EG T+ EIA  L  S  TV  ++ +  RK     R  A+  A+   ++
Sbjct: 192 RERECLTWAAEGLTAKEIARKLNRSIATVTLHLNTAARKLGASNRVQAVVRAMHYRLL 249


>gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 204

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 31/232 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + E     VS   +    +  +   +       R  AL                     
Sbjct: 2   DDHEMVRIGVSAYLSAQPDITVVGEAENGQEAVERALAL---------------KPDIIL 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D+++      +    +  +     +   +         F    +           Y   
Sbjct: 47  MDNVMPIMTGAEATAEILAA-----WPEAKIMMVTS---FLDDDKVYPALEAGAVSYILK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T +  +I   +        ++  +         +   +  ++ +     + +LT RE+E 
Sbjct: 99  TSNAKQIAEAIRKTMGGETVLEPEVT-------SKMMHRMRNGNNTPLYE-QLTDREMEV 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +++GK + EIA  L I+  TV  ++++I+ K   + R+ A+ YA +N +
Sbjct: 151 LLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 202


>gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens
           GS-15]
          Length = 246

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 80/238 (33%), Gaps = 16/238 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL--VRWDLFQEQKLDSIVSSD 81
                  +L+                ++L + +     +    R+D         I++  
Sbjct: 7   REAVRLLELIDASRSCADMERLKRLFHSLNDLLSFDMAVCGTARFDGAGTMNAQQIINIS 66

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----------ITPPAGMDNRYC 131
           +P + +   A  +      V++     F     +              +    G+   Y 
Sbjct: 67  YPEEWLSLYAEHDFAAVDPVVRAHIADFSAKPWSEAYLKWGRPQPFLSLAEDFGIRKGYS 126

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTG 188
                       +  L    +  +      + +LA Y     +              LT 
Sbjct: 127 FGVLSSNDRTASIFSLCVSEKYPVHT-PQILDILAPYFHEALRRTVQTDLPSACLATLTP 185

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E ++W++ GK   EI+VILGIS  TV  + ++I++K     RS A+A A+   ++
Sbjct: 186 REIEVISWLANGKNYWEISVILGISERTVKFHTSTIVQKLGAANRSHAVAIAISTGLI 243


>gi|296268635|ref|YP_003651267.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091422|gb|ADG87374.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 212

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 77/244 (31%), Gaps = 34/244 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V +++  +     + V     R++L   +  +         + A+ E          
Sbjct: 1   MKTVRVLIVDDHRLFRAGV-----RAELGPSIQVVGEAGDVDSAVKAIEEL--------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +++R +  +              L   V     + I    
Sbjct: 47  ---RPDVVLLDVHMPGGGGLEVLRRVREAGIP--------TRFLALSVSDAAEDVIGVIR 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GK 182
           G    Y + T     +   +  +     +           LA +  + F S        +
Sbjct: 96  GGARGYVTKTISGPELTDAIHRVADGDAVFSPR-------LAGFVLDAFASTPAPPIDPE 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  I+ G    EIA  L IS  TV  +++S++RK     R     +A  
Sbjct: 149 LDSLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWASA 208

Query: 243 NNIV 246
             +V
Sbjct: 209 RRLV 212


>gi|226305274|ref|YP_002765232.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184389|dbj|BAH32493.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 210

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 16/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        + ++ E       VG +  L     +  +   D ++        
Sbjct: 1   MVRIVLVDDHAILRQGLRSVLERESDLEIVGEASSLAEALAVVDKVGPDIVLMDLKLSAS 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                L+   +          L    F      +         Y     D   +   +  
Sbjct: 61  SDYEGLTLCGQLSTAHPGLGLLVLTTFLDDQLVVRAVHAGARGYVVKDVDTTELVRAIRA 120

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +              +           +S +        LT RE+E L  ++ G ++ +I
Sbjct: 121 VSRGESAFDSRSASAV----------VRSLNGQSSSKERLTDRELEVLRLLANGLSNIKI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 171 GERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 210


>gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 242

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 29/246 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q++ +++  +       +      +  +  +   +           L+            
Sbjct: 3   QRIRVLIIDDHPLFRQGIRWSLEEAGDMEVVGEAENGQEAIKLAERLS------------ 50

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      ++ R +   E         R   +   V+    +       
Sbjct: 51  ---PDVVLVDINLPGLNGLEVARVIKRRE--------PRVGLIVISVYEDDEQLFQAIKV 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
               Y S       +   +  +     +I    + +   +A    + F+       +   
Sbjct: 100 GAAAYSSKDVHPRDLVRMIREVARGKYLINDSVIAKPH-VATRVLHQFRELAATEDERTS 158

Query: 185 ----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA
Sbjct: 159 ALFAPLTSREIEILDCIARGLSNKEIATQLSISGQTVKNHITSILSKLQVNDRTMAVIYA 218

Query: 241 VRNNIV 246
           ++   +
Sbjct: 219 IQRGWI 224


>gi|261251088|ref|ZP_05943662.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260937961|gb|EEX93949.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 209

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +     R D L  +  +                 G          
Sbjct: 2   IRLILADDHRLMQDGLKSRLEREDNLDIIACVGT---------------GTEALEATLEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +++  +A +            + +   +  +    +       
Sbjct: 47  KPDVLLLDINMPNLNGIEVLEQLAKTSS--------ATSVIMLSMHDSRDYVVRSVKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         + + +  +      +       +              +    KD  L+
Sbjct: 99  KGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQIN---------EAPEEKDDTLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ G  + EIA  L IS  TV  +   I +K    + +  +  A++  +V
Sbjct: 150 KRESDVLKAIANGAGNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLV 208


>gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx,
           regulates anaerobic respiration and fermentation
           (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424]
 gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX,
           regulates anaerobic respiration and fermentation
           (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424]
          Length = 217

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G       +  
Sbjct: 3   IRILLIDDHTLFRSGIRALLQRQADFEIVDEASD---------------GVEGIKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L +   +   V     E      G  
Sbjct: 48  RPDVILLDLNMPGLSGLEALQLLVED--------LPQTAVIVLTVSEEAEELAAALRGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +  G+        +I      ++    A       +  +       LT
Sbjct: 100 RGYLIKNIETEALIAGIRRAAAGEPVISDSMTAKL---VAQFRAPVPAVALRQDDAPRLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 157 AREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214


>gi|332669021|ref|YP_004452029.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338059|gb|AEE44642.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 222

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 13/235 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +DE R   V         LA ++     +    +        G     L        
Sbjct: 1   MTSDDEIRVLLVDDQELFRAGLAVIVDAQDGMRVVGQAGD-----GLEAVRLADDLEPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  ++     +  R + L   ++     +    L    F              + + 
Sbjct: 56  VLMDLRMADMDGVEATRQLFL--PERAARRTRPLRVLVLTTFDLDDRAAAAIRHGASGFL 113

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A +R  +  +     ++          L+      F++          L+ +E 
Sbjct: 114 LKDTTPAMLRDAIRTVHAGNAVLAP------QDLSTLLEGRFRTPTPAPPGYLALSDKER 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E    ++ G ++ EIA  +  S +TV  ++ SI+RK A + R   + +A  + +V
Sbjct: 168 EVFEAVARGLSNTEIAQAVLASESTVKTHVGSILRKLALRDRVQVVVFAHEHGLV 222


>gi|224283771|ref|ZP_03647093.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 277

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 5/217 (2%)

Query: 35  RMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R+  +D            +      VG +  +     +  + + D ++            
Sbjct: 61  RVAVVDDHEMFRAGVIATLQPYFHIVGQAADVEGSIAMIADIRPDVVLLDVHVPGGEGGG 120

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                 K   +      L   V  +  +  +        Y + T     +   +  +   
Sbjct: 121 GAEILAKSQPLSPASAFLALSVSDSPQDVGSVIRAGARGYVTKTITGDDLISSIKQVHEG 180

Query: 151 GRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             +       + +        +          +   L+GRE E +  I+ G T  E+A  
Sbjct: 181 YAVFSPKLAGFVLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAE 240

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++++++RK     R+    +A    IV
Sbjct: 241 LFISIKTVETHMSNVLRKLQLSNRTELTRWAADRRIV 277


>gi|282854131|ref|ZP_06263468.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583584|gb|EFB88964.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|313813050|gb|EFS50764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|314923106|gb|EFS86937.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314966874|gb|EFT10973.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981217|gb|EFT25311.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091787|gb|EFT63763.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315103290|gb|EFT75266.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327327699|gb|EGE69475.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 218

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 70/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     + 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNAEA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q +      V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQGS-----TVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 207

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWP 83
            +    D       +   +        + +      + L+          +D  +     
Sbjct: 3   RIVLVDDHPILRHGMRTLLDTQEDFEVVGDCGDPEEYRLLLKSARPDIVLMDLAL----G 58

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D       +                   + +  + +       + Y         +   
Sbjct: 59  GDTDGVALTAHTRATSPSTAVLVFTT---YDSDADFVRSLDAGASGYLLKDSTPVELFAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  +       +              D        LT RE+E L  ++ G+T+
Sbjct: 116 IRTARDGGSALSPAVASRL-------------MDRMRAPQESLTPREIEVLALLATGRTN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++   L +S  TV  ++  I  K    TR+ A++ A++  ++
Sbjct: 163 RQVGERLFVSETTVKTHVNHIFTKLGVDTRAAAVSRAMKEGLI 205


>gi|325000399|ref|ZP_08121511.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 219

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 65/237 (27%), Gaps = 30/237 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +DE   + +  +      L  +            +  L                 
Sbjct: 5   LLLVDDDELVRTGLRAVLDADPALTVLGEATDGAETPGLVARL---------------RP 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +         R +                 L    F                
Sbjct: 50  DVVLMDIRMPGVDGITATRDLVRRPDPP--------RVLVLTTFGHDRYVYDALRAGATG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +         I   +  +     ++    L  +          F        +D  LT R
Sbjct: 102 FLLKRTPPRDIVRAVHTVAAGESLLFPAALRGLA-------AGFAPDGGDHLQDAGLTAR 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G ++ EIA  L +   TV  ++A ++ KT ++ R+ A+  A  +  V
Sbjct: 155 EGEVLALMARGLSNAEIARELYLGVETVKTHVAGVLAKTGSRDRTQAVVAAYESGFV 211


>gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 235

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L   +              L + +   +  L        Q     + S++P + +   
Sbjct: 7   EYLQAFVSERSPQKLFDIAVHLAQDLDMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
              +  K             PV  T            +    G+ + +     D      
Sbjct: 67  QRDDFYKQDPAANLSHSSTMPVLWTDELYKEAPQFREMACLHGLRHGWTQSLHDQQHNES 126

Query: 143 GLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            + +  P G I   +       +  L      +      +       +++ RE+E L W 
Sbjct: 127 QISVARPNGPIDEVELYDKAGSVQWLCHALHAVLGEHHLNALCPPQPKMSERELEVLKWS 186

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 187 AAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|239942897|ref|ZP_04694834.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 224

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 67/246 (27%), Gaps = 28/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  + + V +++  ++    + V  +  R   +  +                    G   
Sbjct: 1   MTSDSRPVRVLVADDEALVRAGVRAILARDPQIEVVAEAAD---------------GREA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LVR        LD  +        V  +                 +    F       
Sbjct: 46  IALVRQHRPDVVLLDIQMPGLDGLTAVARLHREPTP--------VGVIMLTTFGQDAYVT 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +     D   +  G+  +   G  +       +                  
Sbjct: 98  RALEEGADGFLLKADDPRELLNGVRAVGAGGAYLSPRVAGRVI-----AGMRAHRAAHPH 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LTGRE E L  I  G ++ EIA  L +   TV  ++++++ K   + R  A   A
Sbjct: 153 RPLERLTGREREVLAGIGTGLSNAEIAGRLHLVEGTVKAHVSAVLAKLGVRNRVEAAIAA 212

Query: 241 VRNNIV 246
               ++
Sbjct: 213 HEAGLL 218


>gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC
           27678]
 gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium
           ATCC 27679]
 gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 230

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 28/252 (11%)

Query: 1   MNFEIQQ-VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           MN + +Q + I +  + E   + V            +  L    +   +   +       
Sbjct: 1   MNEQQEQPIRIAVVDDHEMFRAGV------------IATLQPHFNIVGQAPDV-----EG 43

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
              ++         LD  V           +  S       V    +    P      + 
Sbjct: 44  SVAMIAQTKPDVVLLDVHVPGGEGGGGAEILTRSRAYSPNTVFLALSVSDSP-----QDV 98

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV- 178
            +        Y + T     +   +  +     +        +        +   +    
Sbjct: 99  GSVIRAGAQGYVTKTISGDDLISSIKQVHEGYAVFSPKLAGFVLSAFQSAPSGGMAAGGA 158

Query: 179 ----HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
               H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+
Sbjct: 159 NGPIHDDELDRLSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRT 218

Query: 235 GAIAYAVRNNIV 246
               +A    IV
Sbjct: 219 ELTRWAADRRIV 230


>gi|29833613|ref|NP_828247.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610737|dbj|BAC74782.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 220

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 78/240 (32%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +                    GA+   LVR 
Sbjct: 2   PVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAAD---------------GAAVIPLVRQ 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +       V + P  L    F             
Sbjct: 47  LRPDVVAMDVRMPLMDGIEATRAVLRT-------VDRPPKILVVTTFENDEYVYEALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    + ++   A +             +   L
Sbjct: 100 ADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLA--AEHGDGGGNRAARAVMERAAL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 158 TDREGEVLRLMARGLSNAEIAGQLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|317483987|ref|ZP_07942923.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924776|gb|EFV45926.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 218

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V+IV+  +     S +  L    + L  +                    G     +    
Sbjct: 3   VSIVIAEDHALFRSGLKQLLLLGEGLEVIGEAGD---------------GFEAVTVTVAG 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +            +           T            
Sbjct: 48  RPDLLLLDLSMPGRDGLEVIAHIRKE-----CPDTRILIISM---HATSMHIRAAFKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T D       +  +    R +  +    +           +  +       +LT
Sbjct: 100 HGYLLKTADRQEFLFAIQSVLRGNRYVSTELTGTMIDWCV-----GEQTEEIASPLAQLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++EG ++ EIA  L ++  TV  +  + MRK   +       +A+   ++
Sbjct: 155 QREREILKLVAEGCSNKEIAARLSVAEKTVVTHRTNFMRKLGLRNVREVTMFALECGLI 213


>gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 219

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 19  RTSFVS---HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKL 74
            TS V     +    D       +   +S    M  + E  G A     +         L
Sbjct: 1   MTSLVPPPYRVFLVDDHAVFRSGVRAELSRETDMDVVGEAGGVAEAIAGINSTKPHVVLL 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       ++R +                 L   V     + I    G    Y + T
Sbjct: 61  DVHMPDGGGVAVLRGIDSGPVC-----------LALSVSDAAEDVIAVIRGGARGYVTKT 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              + +  G+  +     +        +  L ++             +   LT RE+E L
Sbjct: 110 ISGSELAEGVRRVAGGDAVFGPRLAGFV--LDSFTGRSNAPEPQLDPELDSLTPRELEVL 167

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 168 RLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218


>gi|213964996|ref|ZP_03393195.1| two component transcriptional regulator, LuxR family
           [Corynebacterium amycolatum SK46]
 gi|213952532|gb|EEB63915.1| two component transcriptional regulator, LuxR family
           [Corynebacterium amycolatum SK46]
          Length = 235

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 11/236 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V  +    D           +    +M  +   VG     +          +D  +  
Sbjct: 1   MGVIRVLVAEDQALIRQSFAQLIDAHPQMKVIG-AVGDGAEAVRLASGADVVVMDIRMPV 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +A             P  L    F      +         +     +   +
Sbjct: 60  MDGIEATRQIAQGAPSGGAARASSPKVLVLTTFREEDLVLGALEAGAAGFLLKDSNPREL 119

Query: 141 RIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKS------YDVHWGKDFELTGRE 190
              +M +     +I        L  +   A +      +               + T RE
Sbjct: 120 LSAIMRIHRGEGVIDPKVTPMVLRHVSPRAPHSGRPASASSTHGAGSDPTDAGTQFTPRE 179

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  + +G ++DEIA  L ++  TV  ++ +++ KT +++R   + +A +N ++
Sbjct: 180 QEILNLVCQGLSNDEIARRLVVATTTVKTHVKALLTKTGSRSRVDLVIWAAKNGLL 235


>gi|57865448|ref|YP_189537.1| DegU family transcriptional regulator [Staphylococcus epidermidis
           RP62A]
 gi|251811904|ref|ZP_04826377.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875194|ref|ZP_06284067.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367099|ref|ZP_06613771.1| LuxR family DNA-binding response regulator [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81673409|sp|Q5HLK6|NREC_STAEQ RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|57636106|gb|AAW52894.1| transcriptional regulatory protein DegU, putative [Staphylococcus
           epidermidis RP62A]
 gi|251804583|gb|EES57240.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295959|gb|EFA88480.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318829|gb|EFE59203.1| LuxR family DNA-binding response regulator [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329734541|gb|EGG70852.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU045]
          Length = 218

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 67/219 (30%), Gaps = 9/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +++   M  +     G   +  V         LD  +    P    
Sbjct: 6   ADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHRPDVLILDLSM----PPGES 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A S+  + +   +        +F                Y        ++ + +  +
Sbjct: 62  GLIATSKISESFPDTKIL---ILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +       + +      +              L+ RE+E L  I++G  + +IA
Sbjct: 119 YQGETYVDMKLTTSL-VNEFVNQSQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIA 177

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 178 EKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 207

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 37/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + I++  +       +S +         +                          L 
Sbjct: 1   MEGIRILVADDHPMLREGLSAVLGTRPGFEVVGEAGDGEEVLR---------------LA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +++R +   +      V            +     +    
Sbjct: 46  SGLRPDVVLLDLEMPGTGGVEVLRRLRGLDDPPKVVVF---------TAYDDERLLEALR 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                          I   +  +   G +I  +    +                  G+  
Sbjct: 97  EGARGCLLKGASRTEIFDAVRTVHAGGSVIPPEITARV-------------LKEMRGESE 143

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G T+ E+A  L IS  TV  +++S++ K   + R+ A+A A    
Sbjct: 144 PLTPRELEVLRLVARGLTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIARERG 203

Query: 245 IV 246
           ++
Sbjct: 204 LL 205


>gi|320333696|ref|YP_004170407.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754985|gb|ADV66742.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 214

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 68/218 (31%), Gaps = 13/218 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLV 87
           + R++  D    +   + +L E  G                  +   D I+      +L 
Sbjct: 1   MIRVLLADDHALFRQGLKSLLESEGMRVIGEAANGREAIRYAADTHPDVILMDIQMPELD 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A     +          +   ++                Y     D + +   +  +
Sbjct: 61  GVKATQSILEIDP---NAKVIMITMYRQDRYVFEAVKAGARGYVLKDADASTLLDAIQRV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  D    +           K   +   K  +L  RE   L  +++G ++ +IA
Sbjct: 118 AGGEALLDADMAQNVLDDF-----RDKREVLPSEKHADLNERETTILKLLAQGYSNQDIA 172

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 173 LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|170782105|ref|YP_001710438.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156674|emb|CAQ01832.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 228

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 12/229 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + V         +  +I     + +           G     L R +      +D 
Sbjct: 5   PIRVALVDDQALFRTGVRMLISSQPDLEFAGEA-----ANGQEAVELARTERPDVILMDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D +   A   +    +  + P  L    F              + +     D
Sbjct: 60  RMPVM---DGIHATAEVLRTADASGERPPRVLVLTTFDLDESAARAIRAGASGFVLKDAD 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +     +I      ++        +      V       LT RE E    
Sbjct: 117 PEFLLAAIRTVHAGNSVIAASATRQL----LEHFDPGSRPRVAPPAFASLTSREREIFVL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + G ++ EIA    +S  TV  +++ I+ K + + R   + +A  + +
Sbjct: 173 AARGLSNAEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221


>gi|332535898|ref|ZP_08411613.1| BarA-associated response regulator UvrY [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332034714|gb|EGI71261.1| BarA-associated response regulator UvrY [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 216

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +         +                    G       R  
Sbjct: 2   INVLLVDDHELVRTGIKRILDDVRGFKVIGEAKT---------------GEEAVQFCRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +      +Y   ++    +   V    P          
Sbjct: 47  APNIVLMDMNMPGMGGLEATKKI-----CRYCPDVKI---IVLTVNCEDPFPSKVMQIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +       +   +  +    R I  +       +A   A    +          L+
Sbjct: 99  HGFLTKGAGSDEMVRAIRCVHAGQRYIAPE-------IAQQIALAQVTGRTDENPFQSLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+ +  IA  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 152 ERELQIMLMITKGEKAQNIAERLNLSSKTVNSYRYRMFEKLNVGGDVELTHLAIRHKMI 210


>gi|271968535|ref|YP_003342731.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511710|gb|ACZ89988.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     +     +     M  + E   G     L R        +D  +     
Sbjct: 4   RILLADDEPLLRMAFTMVLEAQPDMEVVGEAGDGMEAVRLARRFRPDVVLMDVRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +  +         ++   L    F              + +         +   
Sbjct: 64  IEATGRIVRT--------CRQTRVLILTTFDLDEYAFAGLKAGASGFLLKNALPEELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +       +    A+Q            +   LT RE E L  ++ G ++
Sbjct: 116 IRNVAAGDAAVSPRITRRLLENFAHQLPTG-GAPASAERLQRLTPREREVLIEVARGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  ++  I+ K   + R  A+ +A    ++
Sbjct: 175 TEIAAGLHLAEATVKTHLGRILLKLELRDRVQAVVFAYEARLI 217


>gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 66/241 (27%), Gaps = 28/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ I+L  +       V  +  R   L  +              A              
Sbjct: 46  SKIRILLADDHALVRRGVRLILDREPDLEVVAEAGDGAEAIDMARA-------------- 91

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                  + D  V       L    A  E       L+        +             
Sbjct: 92  ------HEADLAVLDIAMPRLTGLQAARELAALKPGLRILM---LTMHDNEQYLFQALKS 142

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   +     +             +    +  +      +    +    H      
Sbjct: 143 GACGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRHGEETSDHI----- 197

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++EG +S EIA IL IS  TV  + A++++K   + R     YA+R  +
Sbjct: 198 LTPREEEVLKLVAEGHSSKEIAEILFISIKTVQRHRANLLQKLGLRDRLELTRYAIRAGL 257

Query: 246 V 246
           +
Sbjct: 258 I 258


>gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 219

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    L R        +D  +     
Sbjct: 4   RVVVADDQALVRTGFRMIIDAREDLEVVGEAADGAEAVRLTRELTPDVVLMDVRMPVLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A +          R   L    +      +       + +         +   
Sbjct: 64  IGATRRIAEAGS--------RARILVLTTWDVDAHVVDALRAGASGFLLKDIRPGELVEA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L      ++    L  +      +               EL+GRE E LT I    ++
Sbjct: 116 IRLTARGEALLAPTVLTRV----LDRFLRTLPDPEPPPSLRELSGREREVLTLIGRALSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV N++ +++RK   + R  A+  A  + +V
Sbjct: 172 AEIAARLCLSEATVKNHVTAVLRKLGLRDRVQAVVTAYDHGLV 214


>gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 221

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +        + E   G                LD  +     
Sbjct: 3   RVLLADDHAMFCSGMRALLDTQPDFTCVGEACDGREAVAETARLRPDVAVLDVRMPRLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  +  +           L    +              + +   +     +   
Sbjct: 63  LAATEAILAAPGND-------TRVLVLTTYDADEYVYRALRAGASGFLLKSLAPEELVAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      +I       +    A  A + +       +   LT RE E L  ++   ++
Sbjct: 116 MRVAARGDALIDPSVTRRL---VAKFATVLEPAAAEPPELARLTSREREVLLLLAGACSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  +++ ++ K     R  A+ YA R+ +V
Sbjct: 173 AEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKLV 215


>gi|300784747|ref|YP_003765038.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794261|gb|ADJ44636.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  ++    + +  +      L+ +            +  L               
Sbjct: 3   VRVLLVDDEPLIRAGLRAIVDSEAGLSVVGEAADGAEVPGLVARL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +         +  +       V + P  +    F              
Sbjct: 48  RPDVVLMDVRMPAVDGIRATTHLMST-------VDEPPKVIVVTTFENDDYVYDALVAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         I   +  +     ++    +  +       A    +          LT
Sbjct: 101 SGFLLKRARPEEIVAAIRTVVAGESLLFPAAIRRLA------AQHAPAPAGDGLASAGLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 155 ERERDVLRLVAAGLSNVEIASELYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFV 213


>gi|226357105|ref|YP_002786845.1| response regulator NarL [Deinococcus deserti VCD115]
          Length = 216

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLV 87
           + R++ +D    +   + +L E  G                  +   D I+      +L 
Sbjct: 3   MIRVLLVDDHALFRQGLRSLLESEGMRVIGEASNGREAIRYAADTHPDVILMDIQMPELD 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A     +          +   ++                Y     D A +   +  +
Sbjct: 63  GVKATQSILEIDP---NARVIMITMYRQDRYVFEAVKAGARGYILKDADAATLIDAITRV 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  D    +           K  ++   K  +L  RE   L  +++G ++ +IA
Sbjct: 120 AAGEALLDADMAQNVLDDF-----RDKREELPSEKHADLNERETMILKLLAQGFSNQDIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 175 LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 212


>gi|295836038|ref|ZP_06822971.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197695120|gb|EDY42053.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 223

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 59/229 (25%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V   P     L  +I     +             G     L          +D  
Sbjct: 3   IRVALVDDQPLIRTALEMVIDGTDDLEVVGHA-----ANGEEAIRLAAGTRPHVMVMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 L    F                +      +
Sbjct: 58  MPGMDGIEATRRITERGDGP--------KVLVLTTFDEDDHVYGALRAGACGFLVKDMAL 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   + ++     +I       +      +       +        LT RE E L  +
Sbjct: 110 DAILDAVRVVAAGDALIAPTVTRRL----ISEFAHRAEAEPPTPVPTGLTNREREVLVLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G ++ E+A  + IS  T   Y++ ++ K   + R   +  A    +V
Sbjct: 166 GQGLSNTELAHHMHISTATAKTYVSRLLTKLGARDRVQLVITAYEMKLV 214


>gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2]
 gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
 gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 15/208 (7%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
            +      +      +G  ++           +  + V   +P   +    +        
Sbjct: 6   DSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAVDP 65

Query: 101 VLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +         V           +  N     G+             + + ++ +    +
Sbjct: 66  AILNGLRSSEMVVWSDSLFDQSRMLWNEARDWGLCVGATLPIRAPNNL-LSVLSVARDQQ 124

Query: 153 IILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            I      EI L       +         + +       L+ RE E L W ++GK+S EI
Sbjct: 125 NISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSSGEI 184

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRS 234
           A+IL IS +TVN +  +I +K     ++
Sbjct: 185 AIILSISESTVNFHHKNIQKKFDAPNKT 212


>gi|206890511|ref|YP_002248221.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742449|gb|ACI21506.1| response regulator UvrY [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 213

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 77/240 (32%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       +  +   +  +                       G     ++  
Sbjct: 4   RLKVLIVDDHTLFRKGLKEILLDTPYIKECKEAKS---------------GYEAIDILSK 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           + F    LD  +S     + ++ +        Y   +       P        I      
Sbjct: 49  ESFDIVFLDIAMSDINGIETLKKI-----KILYPETKILMLSMYP---EEQYAIRSLKCG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y + + D   +   +  +   G+ +      ++          +           +L
Sbjct: 101 ASGYLTKSADPEELLKAVDKIIKGGKYLPHTFSEKLL--------HYIDKSEDIPPHEKL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE +    I++GK+  EI+  L IS  TV+ Y A I+ K   +  +  I YA+++ ++
Sbjct: 153 SEREFQVFLMIAKGKSLIEISKELSISIKTVSTYRARILEKLGLENNAEIINYAIKHGLI 212


>gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 216

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 67/224 (29%), Gaps = 18/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           RT  V         +  ++  D             E +          +     + D ++
Sbjct: 4   RTFIVDDNRRARQAVRAILGGDSFFEVVGEAENAREAL----------ERIPGLRPDLVL 53

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +                ++        V H   + +         Y   + D +
Sbjct: 54  MDIRMPETDGIALTRVLKDRLPEIKIV---ILTVSHDPADLLRAVRVGAQGYLVKSLDPS 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                L  +      I  +    +    A  A               LT RE E L  I+
Sbjct: 111 DWISYLRAVADGASPIAEEVAARLVTTLAAPAQ-----GSAAEVAKRLTPREREILGLIA 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            G+++ EIA  L IS NTV N++ +IM K   K R+   A AVR
Sbjct: 166 RGRSNREIAQALTISENTVKNHLKNIMAKLDVKNRAQLAALAVR 209


>gi|159044888|ref|YP_001533682.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157912648|gb|ABV94081.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 36/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +  +V+  +       +  +    D L  +  L        ++  L             
Sbjct: 9   PRTKVVIVDDHPMVAEGIEAILETYDDLQVIGRLCNGRELVEQVETLA------------ 56

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D I+      ++    A     +     +           +     T  + 
Sbjct: 57  --------PDVILLDLNMPEINGLSATEMVLEKCPDTRILILSM---HDSAEYISTAMSH 105

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         IR+ +  +      +               A+     +   G++  
Sbjct: 106 GARGYILKDVLTDEIRLAIEAVMRGETYM------------CTGASASLEPNTADGRE-P 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  ++ GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 153 LTSREQTILLQLASGKSNKEVAATLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G                +D  +     
Sbjct: 4   RVLLADDQALVRAGFRSLLGRAKTLTVVGEAASGEEAVRQAALLEPDVVLMDIRMPGMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 +    F T            + + +   + A +R  
Sbjct: 64  IEATRRVLAER--------PATRVIILTTFDTDEHVFEALRAGASGFLTKEVEPAELRRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++                  F            LT RE E +  ++EG+++
Sbjct: 116 VEIVAAGDSLLSPGVTRR-------VIERFAHRPRPAAALHALTARENEVVRLVAEGRSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L IS  T   +I+  + K   + R   +  A  + +V
Sbjct: 169 DEIAAALVISPLTAKTHISRAITKLGLRDRVQLVITAYEHGLV 211


>gi|311895574|dbj|BAJ27982.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D +AR       ++        T   G       R    Q   LD  
Sbjct: 1   MRVMVVDDHPMWRDGVAR------DLAEAGFAVVATAGDGEEAVRRARASTPQVVVLDLN 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + S    ++ R +  +        ++              + +         Y   +   
Sbjct: 55  LPSLSGAEVCRQVVAA-----DPAVRVL---VLSASGEHADVLEAVKSGATGYLVKSAGR 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +        +  L  ++    +          +LT RE E L  +
Sbjct: 107 EELLDAVRRTAVGDPVFTPGLAGLV--LGEFRRLATEPGTSAEPAAPQLTPRETEVLRLV 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G +  +IA  L +S  TV N++ + + K     R   + YA+   +
Sbjct: 165 AKGLSYRQIADRLVLSHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 212


>gi|302544370|ref|ZP_07296712.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461988|gb|EFL25081.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 232

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 16/230 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         ++    M  + E   G      VR        +D  +     
Sbjct: 4   RVMLVDDQVLLRTGFRMVLAAQPDMEVVAEAGDGLEALEAVRSAEVDVVLMDVRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   E             L    F       +      + +         +   
Sbjct: 64  VEATRRICEQEGSP--------RVLILTTFDLDEYAFSALKAGASGFMLKDVPPGELLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIG-------LLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +  +     ++       +           A      +S      +   LT RE E +  
Sbjct: 116 IRAVHSGDAVVAPSTTRRLLNRFAPMLPGTAGGGIGGRSGAAGRPELERLTEREREVMML 175

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 176 VAQGLSNGEIAGRLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETGLV 225


>gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           + + D+++   V       + L  +   +                G    +L+       
Sbjct: 1   MRKMDKRKILVVDDHLVVREGLKLIFETEEEYEVIGEAEN-----GEKALVLIEQLKPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      + +R +   +             +    F+         A     Y 
Sbjct: 56  VLMDLNMPRRSGLEAIRALKEKKNP--------VPIIILTTFNDENLIREGLALGARGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGRE 190
                   +   +        ++  +       ++       K         +  +T RE
Sbjct: 108 LKDSTREELIRTVEAAIRGELLLQPE-------ISGIIFGAKKESKESNNTFNAGITERE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L  ++ G TS EIAV +GI+  TV  ++ +I  K   ++R  A+A A+   I+
Sbjct: 161 LFVLQAVARGCTSKEIAVDMGIAERTVKAHLTNIYSKLKVESRPQAVAVAIEQGII 216


>gi|328754436|gb|EGF68052.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 218

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +        ++ +   V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVI-----ARSVQQGGTVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|323500078|ref|ZP_08105032.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323314934|gb|EGA67991.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 212

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +               +AR+  ++  +         T   G     +V+  
Sbjct: 5   IKVVIADDHQVVL---------DGFMARLQ-MEPEIDVIG-----TASNGLEAVEVVKEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 L   +       +       
Sbjct: 50  NPDVVLMDVSMPIMNGIEATSMIREDN--------PEAKVLMLTMHDNREYIMKVMQVGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       +++   +  +              +           +       K   L+
Sbjct: 102 VGYMLKEICASKMVQAIKTVNQGSTYFCESVTQTL---------FSQQVIPAAQKPNPLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  +++G +S ++A +L IS  TV  +  +I  K    + +    YAV   +V
Sbjct: 153 RREEAVLKLVAQGHSSKKVASMLNISYRTVETHRQNIKHKLDIHSTAELAKYAVEQGLV 211


>gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 67/251 (26%), Gaps = 47/251 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  +     S V    + +  +  +            +                  
Sbjct: 3   VKVFLVDDHSVFRSGVRAELSAAPGIKIVGDAGTVADAVTGI------------------ 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              + + D ++      D                 Q        V     + I       
Sbjct: 45  --GDTQPDVVLLDVHMPDGGGL----AVITRAPGPQYL---ALSVSDAAEDVIALIRAGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y +   D   +   +  +                 LA +  + F S  V      E  
Sbjct: 96  RGYVTKNIDGPELAEAITQVHGGDAYFSPR-------LAGFVLDAFASGGVVEDPAGEPE 148

Query: 186 -----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT T  R 
Sbjct: 149 KAGEDEAVVDKLTRRELEVLRLLARGYTYKEIASELFISVKTVETHASNVLRKTQTSNRH 208

Query: 235 GAIAYAVRNNI 245
               +A    +
Sbjct: 209 QLTRWASERAL 219


>gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 262

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +D      ++           +                 +       +LV  
Sbjct: 45  PVRVLLVDDDAHMRRVIAQELMSDQRTLLVAQATS----VREGRKAIKQHEFD-VMLVDL 99

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +L   +     +  D+                  V      +   +     + +      
Sbjct: 100 NLGDGEGF---MLIDYMKS---------------VRPTAEAIVISIMQNDEQVLHAFELG 141

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y             ++ +   G  I  +    +                   ++ E 
Sbjct: 142 ATGYLVKNSWFGSYPQAVLQVANGGASITPNLARRLLQRFDPSGAAAPHAQRRVEQETER 201

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A    +
Sbjct: 202 LSQREKEVLRMVASGYTSAEIGNRLFISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 261


>gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 65/230 (28%), Gaps = 20/230 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            T     L    D       L   +          E   G     L    +     +D  
Sbjct: 1   MTRARLRLLIADDHAVVRAGLRALLEGEEGFEVAGEASSGEDAVRLAGQLVPDVVLMDLR 60

Query: 78  VSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +  +   D V  +           +          +    + +         Y      
Sbjct: 61  FAGVNQGIDGVEAI--RRLAIAAPGVPVVM---LTSYAGRADAVRALGAGARGYVLKAGP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +      G  +  + +  +                    D +LT RE+E +  
Sbjct: 116 PEELFRAVRSAAAGGLGLAPEIVDGL-------------VGQVVSPDPDLTTREIEVIRL 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G+++  IA  L +S  TV  ++  I RK     R+ A++ AVR  ++
Sbjct: 163 LASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEAVRRGLL 212


>gi|302545305|ref|ZP_07297647.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462923|gb|EFL26016.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 209

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 64/241 (26%), Gaps = 36/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q++ ++L  +       +S +   +D +  +                    G    +   
Sbjct: 4   QEIRVLLADDHPVVREGLSAMLESADGITVVGQAGS---------------GEEAVVQAM 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      +    +                 +    +    + +     
Sbjct: 49  ALRPDIILLDLRMGGMDGVEATTQILRKA--------PACKVVIVTTYEDDSDILRAVEA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +        ++      ++                   +   
Sbjct: 101 GAAGYLLKGSSRQELIGAVQTAARGETVLTPSLAGKL-------------LRTRVAEPSP 147

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+GRE E L  + +G T+ EI   L ++  TV  ++    +K     R+ A+  A+   +
Sbjct: 148 LSGRECEVLRLVGQGLTNAEIGAKLFVAEATVKTHLLRSFKKLGVSDRTAAVMTAMERGL 207

Query: 246 V 246
           +
Sbjct: 208 L 208


>gi|251789457|ref|YP_003004178.1| transcriptional regulator NarL [Dickeya zeae Ech1591]
 gi|247538078|gb|ACT06699.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 215

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L + +  L  +                    G    +L     
Sbjct: 7   TVLLIDDHPMLRNGVKQLLSMAPDLCVVGEA---------------SQGEQGVVLAEQLD 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + +  +  +       V          V +   + I+   G  +
Sbjct: 52  PDLILLDLNMPGMNGLETLARLRETSLSGRIVVF--------TVSNHEEDVISAFKGGAD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            Y     +   + + L        ++       +           +       +D  +LT
Sbjct: 104 GYLLKDMEPEDLLVALHQAAAGKMVLSDTLTPVLA-------ASLRETRSSDTRDIQQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I++G  +  IA  L I+ +TV  ++  +++K   ++R  A  + V+  I
Sbjct: 157 PREKDILKLIAQGLPNKVIARKLTITESTVKVHVKHLLKKMKLRSRVEAAVWVVQEKI 214


>gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 219

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 66/220 (30%), Gaps = 11/220 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFD 85
           D   R++ +D    W   +       G          +         + D ++      D
Sbjct: 3   DAPLRVMVVDDHPMWREGVARDLTEEGFDVVATADGCVSAAARAAAVRPDVVLMDMQMPD 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +A +              L         + +         Y   +   + +   + 
Sbjct: 63  GSGAVATAAVLD---AHPCAHVLVLSASDERDDVLEAIKAGATGYLVKSAQRSELVAAVR 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  +         GL+      + +S          LT RE E L  +++G +S +
Sbjct: 120 ATGDGQAVFTP---GLAGLVLGEYRRIARSPGEADAAVPTLTQRETEVLRHVAKGLSSRQ 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV N++ + +RK     R     YA+ + +
Sbjct: 177 IATRLEISPRTVENHVGAALRKLQLGNRVELTRYAIEHGL 216


>gi|225028039|ref|ZP_03717231.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353]
 gi|224954639|gb|EEG35848.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353]
          Length = 223

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +   ++ +      +        +                  
Sbjct: 2   IKVLIADDQELIRESLKIVLGANEDMEVTGIAENGEQVLSEIKK---------------K 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D Y         +    F              
Sbjct: 47  KPNVILMDIRMPGIDGVECTRLVKEKYPDIY--------IIVLTTFDDDEYIFGALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +     +I  +   +I  L  + A    +  V      ELT
Sbjct: 99  SGYLLKGISMKNLAEAIRTVVSGKAMINPEITDKIVKLFNHMAQSSYAIQVDNELTEELT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E   +  I  G ++ EIA  L +S  TV NY++S++ K   + R+    +AV+  
Sbjct: 159 KTEWRVIQKIGCGMSNKEIASELALSEGTVRNYLSSVLSKLELRDRTQLAIWAVQTG 215


>gi|134097553|ref|YP_001103214.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910176|emb|CAM00289.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 66/237 (27%), Gaps = 31/237 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  ++    + +  +    D L  +            +  L                 
Sbjct: 1   MLLVDDEPLIRTGLRAVIEAEDDLRIVGEAADGAEVLPMVRRL---------------RP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  + +         +          V   P  +    F              + 
Sbjct: 46  DVVLMDVRMPAVDGIRATTAV-------LDAVADPPAIIVITTFEHDDHVYDALRAGASG 98

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +         I   + +      ++    +  +           +           LT R
Sbjct: 99  FLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLV---------ARRAPAARRPAPTLTER 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  +++G ++ EIA  L I   TV  ++ +++ K   + R+ A+ +A  +  V
Sbjct: 150 EAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFV 206


>gi|92109679|ref|YP_571965.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91802761|gb|ABE65133.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis
           X14]
          Length = 234

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 62/232 (26%), Gaps = 22/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+  +       S    +   T   G   +  +               +D+P +      
Sbjct: 8   LIDAVDVAQDERSIHNAIKNFTVASGFDRYAYIHVHAGDGVG-----FTDYPVEWQNIYL 62

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTFDV 137
                    V+            +  +              +     G+ +         
Sbjct: 63  EKRYTVIDPVVTTAKRTMKMFAWSAEDPTVWRGSREIKQFYSEATDFGIRSGVSVPIRTS 122

Query: 138 ARIRIGLMLLFPKGRI---ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                 + L   + ++           + L   +      S       +  L+ +E   L
Sbjct: 123 YGRTAMITLASDRRQVELPPWDPMQAALALAYIHIHLSLASASSLKVGEVSLSAQEATSL 182

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +W S GK+ + IA +LGI   TV  Y+ +   K        A+  A+   ++
Sbjct: 183 SWSSHGKSMNVIADLLGIKPRTVQFYLDNARDKLGASNLQQAVRIAMEKKLI 234


>gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 84/250 (33%), Gaps = 33/250 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + V ++L  ++      ++ +   S  +  +                        + L+
Sbjct: 11  AKPVGVILVEDEPATQDHLTRVIDSSPHMKLLGVASTVQD---------------AYSLL 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   +D  +      +++  ++  + +    V+          F      +    
Sbjct: 56  FMTNPKVALIDLGLPDSSGIEVIEWLSKHKPETECLVI--------TAFGDEDHVVRSLE 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------GLLAAYQANMFKSY 176
              + Y    +    +   ++ +   G  I      ++         + A Y  N  +  
Sbjct: 108 AGASGYLLKDYSNEELIEHILEVANGGSPISPLIARQLLSKMQTPRTVDAEYPQNKAEQD 167

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    K   +T RE++ +  ++ G T+ EIA  +GIS +TV  ++  I +K    +RS A
Sbjct: 168 ESQ--KACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVHSRSEA 225

Query: 237 IAYAVRNNIV 246
           +  A    ++
Sbjct: 226 VYEATLLGLL 235


>gi|320534062|ref|ZP_08034606.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133731|gb|EFW26135.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 251

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 17/242 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V  +    D    +      V+    M  + E V G      +            +V  
Sbjct: 7   GVIRVAVVDDQPLLVSAFSALVAAQPDMEVVLEAVDGRQAVEGLTARATGHHGAVDLVLM 66

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D    ++  ++   + +          L    F      +       + +     +   +
Sbjct: 67  DLRMPVLDGVSAIRELRAAPATASLRVLVLTTFDDEDLVLAALGAGAHGFLLKDAEPMTL 126

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS----------------YDVHWGKDF 184
              + ++   G  +       +                                  G   
Sbjct: 127 LEAIRVVARGGSWLDPAVTGTVLAHLDAGTEPGAPQSPASPSGPTDGAVPVVGAPSGPYE 186

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE   L  + +G ++  I   L ++ +TV +++ +I+ KT  + R   + YA+   
Sbjct: 187 ALTGREDAVLALVCQGLSNARIGERLHVAESTVKSHVKTILGKTGCRNRVELVIYALTTG 246

Query: 245 IV 246
           +V
Sbjct: 247 LV 248


>gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 208

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 64/241 (26%), Gaps = 36/241 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  + E   + +       D    +                    G       
Sbjct: 1   MERIKLLIVDDHEMVRTGLRTFLELEDDFEIVAEASD---------------GQEAIDKA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D ++      D    +A                     F           
Sbjct: 46  NETRPDIILMDLLMDGMSGIDATAKLAPEGYKII----------VLTSFLDDDMLFPVLD 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T   A I   +   F                                 K  
Sbjct: 96  AGAFSYLLKTSTAADIADAIRKAFRGEP-----------TFQGKVTTKMYRRFQERPKHD 144

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  + EGK++ EIA  L I+  TV  +++ I+ K   + R+ A  YA ++ 
Sbjct: 145 VLTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDLQDRTQAAIYANKHQ 204

Query: 245 I 245
           +
Sbjct: 205 L 205


>gi|326334144|ref|ZP_08200369.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325948061|gb|EGD40176.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 215

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 35/246 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V +V+  +     + V    +RS ++  +   +   +    +               
Sbjct: 1   MSEVKVVIVDDHAMFRTGVRAELSRSPVIRIVGEAEDVDTAVKAIAE------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE-LFCPVFHTLPENITPP 123
                    LD  +      +++R             +      L   V     + I   
Sbjct: 48  --GKPDVVLLDVHLPGGGGVEVMRK---------APAVDGSPRYLALSVSDAAEDVIGTI 96

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G    Y + T   + +   +  +     +           LA +  + F         D
Sbjct: 97  RGGARGYVTKTITGSELVAAIQRVSGGDAVFSPR-------LAGFVLDAFAGTIAIADID 149

Query: 184 FEL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +L   T RE E +  I+ G +  E+A  L IS  TV  ++++++RK    +R     +A
Sbjct: 150 EDLDRLTEREREVMRLIARGYSYKEVAGELFISIKTVETHMSNVLRKLQLSSRHELTRWA 209

Query: 241 VRNNIV 246
               ++
Sbjct: 210 NDRRLL 215


>gi|302549213|ref|ZP_07301555.1| two-component system regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466831|gb|EFL29924.1| two-component system regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     LVR        +D  +     
Sbjct: 3   RVLLVDDQPLIRSGFRALLDLEDDVEVVAEAADGEEGLALVREQRPNVALIDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +                +         +   
Sbjct: 63  IEATRRIAA------DPSLAGVHVVMLTNYGMDEYVFEALRAGAAGFLVKDIVPEDLLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++      ++  +  Y      +         ELT RE E +   + G ++
Sbjct: 117 VRVAARGEALLAPSITRKL--IHRYVTQPPPTTSAALE---ELTSREREAVALAARGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           D+IA  + IS  T   +I   M K     R+  +  A  + +V
Sbjct: 172 DQIAGHMVISPMTAKTHINRAMTKLHAHDRAQLVVLAYESGLV 214


>gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 225

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 63/242 (26%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +     + +  L    D  A             R                
Sbjct: 4   VSDVRVLLADDQPLIRAGLRVLLETEDGYAVAAEAADGAEAVRRARET------------ 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      D +  +           L     +    F           
Sbjct: 52  ---RPDVALMDVRMPGTDGLDALSAITG------DPELAGTRVIVLTTFDLDDYVYRALR 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +     D   +   + L+     ++       +       A    +      +  
Sbjct: 103 SGASGFLLKDTDPVALLRAIDLVHAGEALLAPSVTRRLIT---EFARHGPAAPPGTDRLA 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E L  +  G T+ EIA  L IS  T   ++  ++ K   + R   +  A    
Sbjct: 160 VLTGREREVLALVGRGHTNGEIAAQLVISPATARTHVGRLLTKLGARDRVQLVVIAHETG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|251798920|ref|YP_003013651.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546546|gb|ACT03565.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 225

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 61/218 (27%), Gaps = 11/218 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  +   ++       + E   G                +D  +      
Sbjct: 5   ILLADDHQIVLKGISFFLAMQPDFELVGEAHNGKEAVEKAGELQPDIVLMDLNMPIMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L    F      +         Y     +  ++   +
Sbjct: 65  EASALIKEQH--------PHIKVLVLTSFADQSHIVPALQTGAIGYMLKDVEPDQLAEAI 116

Query: 145 MLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
              +     +  D    +        +      +         LT RE+E L  +++G +
Sbjct: 117 RSAYKGNIQLHPDISRALLSRPEPEPRPEPVIQHSNRDKSLEALTPRELEVLELLTKGLS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + +IA  L ++  TV  +++SI+ K     R+ A  +A
Sbjct: 177 NKDIAQTLIVAEKTVKTHVSSILSKLDLSDRTQAALFA 214


>gi|134093850|ref|YP_001098925.1| putative two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737753|emb|CAL60798.1| putative two-component system response regulator LuxR family
           [Herminiimonas arsenicoxydans]
          Length = 232

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 77/231 (33%), Gaps = 22/231 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-------DSIVS 79
           P  S LLA ++ ++       R+  L   +G S   LV      E +           + 
Sbjct: 12  PPESTLLAPVLLVEDEPLIRRRLEGLLLQLGYSSDALVMTGSLAEARACMVNQPIALALV 71

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVA 138
                D      ++E       L            +  + I          Y     D  
Sbjct: 72  DLGLPDGSGIDLIAEMHMADPALPILVISA----WSTEDAILAALRAGATGYVLKERDDM 127

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLT 195
            + + +  +   G  I          +A    +  +   +   K   +  L+ RE E L 
Sbjct: 128 EVALSIRSVLRGGAPIDP-------FIARRIIDELRPKTMPHEKAPNNETLSPRESEILG 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G  + EI+  L +SR T+  +I  I RK A  +R+ AI  A    ++
Sbjct: 181 LVAQGLANREISEQLHLSRYTIECHIKHIYRKLAVSSRTKAIHEARSRGLL 231


>gi|145596642|ref|YP_001160939.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305979|gb|ABP56561.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 235

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 62/238 (26%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S +  +    D +      +                G     L R  
Sbjct: 3   IEVLVVDDQPLVRSALRMVVAEVDDMVIAGEAET---------------GEEAVRLTREL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 L    F              
Sbjct: 48  KPDVVLMDLRMPGMGGIEATGQIVRLS--------PETRVLVLTTFDEDDHVFGALQAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +      +  I   +  +     ++       +     +  +   +  V       +T
Sbjct: 100 AGFLIKNMSLDDILDAVRTVAHGNGLLAPSVTRRLI---KHVVDTRTAPTVPRRPLSGIT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E LT +  G ++ EIA  L +S  TV  YI  ++ K   + R   +  A    +
Sbjct: 157 EREREVLTLVGRGLSNSEIADELRLSHATVKTYITRLLSKLGARDRVHLVIAAYEAGL 214


>gi|86134557|ref|ZP_01053139.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
 gi|85821420|gb|EAQ42567.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
          Length = 217

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 62/177 (35%), Gaps = 5/177 (2%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +   +D ++      ++    A       Y  ++    +   V               N 
Sbjct: 46  ENHNIDVVLMDIQMPEMDGIKATGLVKNKYPQIK---VIMLTVVDDDEYIFNAIKAGANG 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     D   +   ++ +   G  +       +  L   +     +  +      +LT R
Sbjct: 103 YLLKEIDAENLYKSIIEVTEGGAPMSPSIA--LKTLNLLRNPTIATEKIEESDTIKLTKR 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  +S+G   + I+  L IS +TV  +I +I +K    ++  A+  A + N++
Sbjct: 161 ETEILIQLSKGLNYNSISDNLIISPSTVRKHIENIYKKLQVHSKMEAVMKAQKRNLI 217


>gi|271962179|ref|YP_003336375.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505354|gb|ACZ83632.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 58/221 (26%), Gaps = 11/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L R         D  +     
Sbjct: 4   RVIVADDQEIARTGLVMILDAQPGIEVVGEAADGRRAVELARRLRPDVCLFDIRMPGLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V+          F                +         +   
Sbjct: 64  IEATRSLAGPNVADPLAVV------VITTFDLDDYVYAALRAGARGFLLKNAGAEMLSQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +                       LT RE + L  ++ G+T+
Sbjct: 118 IHAAANGDALIAPSITARL----LSAFAGSGPVSPPAKPVETLTDREEQILATVARGRTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA    IS +TV ++IAS+M K   + R     +A   N
Sbjct: 174 SEIADEFYISLSTVKSHIASLMAKLGARNRVEIAMWAYETN 214


>gi|242243808|ref|ZP_04798252.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242232744|gb|EES35056.1| transcriptional regulator [Staphylococcus epidermidis W23144]
          Length = 218

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 9/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +++   M  +     G   +  V         LD  +    P    
Sbjct: 6   ADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHQPDVLILDLSM----PPGES 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A S   K          L   +F                Y        ++ + +  +
Sbjct: 62  GLIATS---KISESFPETKILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +       + +      +              L+ RE+E L  I++G  + +IA
Sbjct: 119 YQGETYVDMKLTTSL-VNEFVNQSQTDEVSPSSDPFKILSKRELEILPLIAKGYGNKDIA 177

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 178 EKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 244

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 67/229 (29%), Gaps = 27/229 (11%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    + VG   F                + S++P   +      E      +
Sbjct: 2   DHEIHSFIKRKLKGVGDVWFSYFMMSKTSTSHP--YIISNYPEAWMNEYLKKEMFLSDPI 59

Query: 102 LQRPTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFP 149
           +        P      + +T                + + Y  +  D       L +   
Sbjct: 60  IVASLARITPFSWDDNDLVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANH 119

Query: 150 KGRIILRDRL----WEIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTW 196
                    +     ++ +L                 ++      ++  L+ RE E L  
Sbjct: 120 LEDADFEKCMKSHENDLQMLLVNVHEKVMAYQRAIKDQAKPPDSSRNALLSPRETEVLFL 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 180 VSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|315271311|gb|ACO47091.2| putative response regulator, NarL [Deinococcus deserti VCD115]
          Length = 214

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLV 87
           + R++ +D    +   + +L E  G                  +   D I+      +L 
Sbjct: 1   MIRVLLVDDHALFRQGLRSLLESEGMRVIGEASNGREAIRYAADTHPDVILMDIQMPELD 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A     +          +   ++                Y     D A +   +  +
Sbjct: 61  GVKATQSILEIDP---NARVIMITMYRQDRYVFEAVKAGARGYILKDADAATLIDAITRV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  D    +           K  ++   K  +L  RE   L  +++G ++ +IA
Sbjct: 118 AAGEALLDADMAQNVLDDF-----RDKREELPSEKHADLNERETMILKLLAQGFSNQDIA 172

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 173 LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|288904336|ref|YP_003429557.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|288731061|emb|CBI12607.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
          Length = 227

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE------QKLDSIVSSDWPFDLVRC 89
           ++  D        +  +         +    D  +        K D I+       +   
Sbjct: 4   VLIADDQELIRESLKIVLSAYPDIEVVGAVSDGTEVLETLPTSKPDVILMDIRMPKMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +      + Y  ++    +    F       +        Y      +  +   ++    
Sbjct: 64  LCTKAVKENYPNIK---VIILTTFDDDDFIYSALKYGATGYMLKGTSMDDLHDAVVTANE 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I  D   ++  L +  A    +  V      +++  E   +  I  G ++ EIA  
Sbjct: 121 GRAMINPDIATKVFKLFSQMAQSNFAIQVDDDLVHDISKMEWRIIQQIGFGLSNKEIAAK 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  TV NY+++I+ K   + R+    +AV+  
Sbjct: 181 LYLSEGTVRNYLSNILSKLNLRDRTQLAIWAVQTG 215


>gi|239943689|ref|ZP_04695626.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990140|ref|ZP_04710804.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447153|ref|ZP_06586543.1| two-component system DNA-binding response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291350100|gb|EFE77004.1| two-component system DNA-binding response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 231

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     R++        +  V        + +        ++  
Sbjct: 14  RVRVVLVDDHRMFRTGVQAEIGRTE--------ETGVEVVGEAADVDQA-----VTVITA 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A         V      L   V     + I    G 
Sbjct: 61  TRPEVVLLDVHLPGGGGVEVLRRCAPLMGTAENPV----RFLALSVSDAAEDVIGVIRGG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 117 ARGYVTKTITGTDLVDSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 229

Query: 245 IV 246
           +V
Sbjct: 230 LV 231


>gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
 gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
          Length = 273

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 78/248 (31%), Gaps = 14/248 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF--- 69
                 + S             R++ +D        + A  E  G +       +     
Sbjct: 25  ASGHAAQDSAQDSTQASPPAPVRLLLVDDEPGLRTAVKAYLEDEGFAVTTANDGEEGWEK 84

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
            ++ L  +V SD          L  K +    L     +F        + I       + 
Sbjct: 85  AQELLPDVVISDVMMPCCDGYGLLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDD 144

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDV 178
           Y    FD   +   +     +   +L +              +I  + +  A   ++   
Sbjct: 145 YIPKPFDPDELVARVRNAVRRQERLLAEAARFADADIGQMARQITEIRSLLATGGQAKKP 204

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               D   T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + 
Sbjct: 205 AGSTDLVFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFIKTGTASRTELVR 264

Query: 239 YAVRNNIV 246
           YA+ + +V
Sbjct: 265 YALEHGLV 272


>gi|300698157|ref|YP_003748818.1| nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
 gi|299074881|emb|CBJ54450.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CFBP2957]
          Length = 217

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + +  L  R      +                    G       +  
Sbjct: 3   IRILLIDDHALFRTGIRLLLQRQPDFEVVDEASD---------------GLEGIKRAQQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L     +   V     E         
Sbjct: 48  RPDVILLDLNMPGLSGLETLQLLVQD--------LPEAAVVVLTVSEEADELKATLREGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +  G+        +I      ++    A+     K           LT
Sbjct: 100 RGYLVKNIEADALVAGVRKAAAGEPVIAESMTAKL---VAHFRAPEKPAQPEAVPVERLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  +  G ++ EIA  L ++ +TV  ++ +I++K    +R     YAV N +
Sbjct: 157 SRERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214


>gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 231

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 63/240 (26%), Gaps = 30/240 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +V+  +       V  L      +  +            +               
Sbjct: 1   MDSIRLVIADDHRLFRDGVKKLLEYESDIEVIGEAGDGEEALKVVRE------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +       LVR +                 +               +
Sbjct: 48  --KKPDILLFDINMPKKDGIQLVRELNSLSHGI--------KFVAVSAKDDEDSLSALSS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         +   +         +           A      F        + +
Sbjct: 98  VGVLGFVLKASGRVELLSAIRSANRNQPYVDPQV-------AGKLLTSFSRRKEENDQLY 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L W+++G ++ E+A  + +S  TV N+++ +++K   + R+ A   A R  
Sbjct: 151 ELTPREKEILYWLAQGLSNSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWRIG 210


>gi|241764572|ref|ZP_04762589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365975|gb|EER60596.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 237

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 71/250 (28%), Gaps = 37/250 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V +++  +       +  L  +   L  +                          L 
Sbjct: 6   LRPVTLLVVDDHNLFRRGLVALLGQDPGLQVVGEAGDAAQAMR---------------LA 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      D +R +          V      L   V     +  T   
Sbjct: 51  PALRPDVILLDNHLPGVTGVDAIRGLRE--------VSPSSRVLMLTVSEDAQDLATALR 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL----------AAYQANMFK 174
                Y   T D   +   +        ++  + + ++             A    +  +
Sbjct: 103 NGAQGYLLKTIDGDLLAQAIRRAAAGEPVVSPELMGKLVAAFQSQGAPEADALEPGSAER 162

Query: 175 SYDVHW----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           S              L+ RE E L  I  G ++ EIA +L I+  TV  ++  I+RK   
Sbjct: 163 SQPPAAFDVGDASTPLSPREEEVLREIVRGASNKEIARVLDIAETTVKIHVQHILRKLGL 222

Query: 231 KTRSGAIAYA 240
            +R  A  YA
Sbjct: 223 SSRVQAAVYA 232


>gi|220906489|ref|YP_002481800.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863100|gb|ACL43439.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 236

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 70/256 (27%), Gaps = 35/256 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + IVL  + +     +     R   +  +            + +             
Sbjct: 1   MNPIRIVLVEDHDLTRVGMRMTLQRQGHVTVVGEAANGTEGLKLIESFL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      ++ R +             +   L   +       +   A
Sbjct: 50  ----PDVAIVDIGLPDVDGIEVTRQIKRK------PETSKTKVLILTLRDNEQVVLAAFA 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVH 179
              + YC        +   +         I               + +      +     
Sbjct: 100 AGADSYCMKDVSSEHLVEAIQATNEGHNWIDPAIAGIVLRQTRQSIDSEMGIELQETVNI 159

Query: 180 WGKDFE---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              + E         LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K   
Sbjct: 160 RATEPEYSQILEASPLTERELEVLQLIVEGDSNALIAEKLFITVGTVKTHVRNILNKLCA 219

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A   A+R+ ++
Sbjct: 220 DDRTQAAVRALRSGLI 235


>gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica]
          Length = 249

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +      +G+  +         +   D ++ S +P + V     +       V+  
Sbjct: 15  LRDHIDRKLSSLGSPEYAYTVVRK--KNPSDVLIISSYPDEWVDLYCANNFQLTDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
             +   P        +                 + N +  +  D       L ++     
Sbjct: 73  AFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIASNG 132

Query: 153 I-----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWI 197
                  L      + +L                   +           T RE E L W 
Sbjct: 133 QEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWA 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA I GIS +TV  ++ +I+ K        AI   V   ++
Sbjct: 193 SMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|312868047|ref|ZP_07728251.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096451|gb|EFQ54691.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
          Length = 228

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 74/215 (34%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +         +    D         +   D I+       +   
Sbjct: 5   VMVADDQALIRESLKIILSAHPDIEVVATVEDGNHVLSSIPQTHPDLILMDIRMPGMDGV 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A  E  ++Y  ++    +    F       +      + Y         +   + +++ 
Sbjct: 65  LATKEVKEHYPDIKI---IILTTFDDDEFIYSALKYGASGYLLKGASTEELYEAIKVVYQ 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  + +  A    S  V      +L+  E   +  +  G+++ EIA  
Sbjct: 122 GGAMINPNIASKVFQIFSQMAKSNFSIAVDEDNVKDLSTTEWRIIQEVGYGESNKEIAAK 181

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  TV NY+++I+ K   + R+    ++V+  
Sbjct: 182 LFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQTG 216


>gi|299069373|emb|CBJ40639.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           CMR15]
          Length = 221

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R      +                    G     L +  
Sbjct: 3   IRILLIDDHTLFRSGIRLLLQRQPDFEVVDEAAD---------------GLEGIKLAKRH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +A          L     +   V     E         
Sbjct: 48  RPDVILLDLNMPGLSGLETLQLLAQD--------LPDTAVVMLTVSEEADELKAALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186
             Y     +   +  G+        +I      ++     A +     +          L
Sbjct: 100 RGYLVKNIEADTLVAGVRRAAAGEPVISESMTAKLVAHFRAPEKAAPAAPAAASVSADRL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE + +  ++ G+++ EIA  L ++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 160 TPRERDIVRGLARGESNKEIARALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVEHGL 218


>gi|298249257|ref|ZP_06973061.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547261|gb|EFH81128.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 62/228 (27%), Gaps = 9/228 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D           +       A+     G     +      +    D ++     
Sbjct: 6   HVLIVDDQRLLREGFRKLIEMEPDFEAVGMAGDGEEALAVAERLHAERTAPDVVLMDVRM 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +    A     + +   +         F                Y        ++   
Sbjct: 66  PRMDGIAATRAFKERWPESRIV---ILTTFDDSELIHAGLQAGALGYVLKDITAEQLATS 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWIS 198
           +        ++  D   ++    +                      +LT RE E L  ++
Sbjct: 123 IRAAAQGQVLLHPDIASKVIASLSSVPTETAVTPATPPSIGGSDLAQLTEREREILALLA 182

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ EI+  L I+  TV N++++I+ K   + R+ A   A     +
Sbjct: 183 HGASNREISEALYITGGTVKNHLSNILGKLGVRDRTQAALKARELGWM 230


>gi|319401681|gb|EFV89890.1| transcriptional regulatory protein degU [Staphylococcus epidermidis
           FRI909]
          Length = 218

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 9/219 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +++   M  +     G   +  V         LD  +    P    
Sbjct: 6   ADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHQPDVLILDLSM----PPGES 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A S   K          L   +F                Y        ++ + +  +
Sbjct: 62  GLIATS---KISESFPETKILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           +     +       + +      +              L+ RE+E L  I++G  + +IA
Sbjct: 119 YQGETYVDMKLTTSL-VNEFVNQSQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIA 177

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 178 EKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 210

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 64/223 (28%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +          E   G     L     F    LD  +     
Sbjct: 3   RILLAEDQVMVRQGLKMMIETEPEFQVTGETDNGKEAIALCEKMQFDIAILDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +        +  ++         F      +       + Y     D   +   
Sbjct: 63  LKAAKIIQS-----RWPHIKILM---LTTFDDDNYVMEALRIGVSGYILKNGDTDSLLRS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  I           AA               D  LT RE   L  I EG ++
Sbjct: 115 IRSALKGGLSIEEGV-------AAKVVPQLMKQQDTKEPDPSLTPRERAILKCIGEGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L IS  TV N  + I+ K   + R+    YA+R+N+V
Sbjct: 168 NEIAERLAISTGTVKNNTSQILTKLDLRDRTQLAIYAIRHNLV 210


>gi|238926539|ref|ZP_04658299.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
 gi|238885485|gb|EEQ49123.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
          Length = 209

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 18/226 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V         +  ++      + T    +     G     L+         +D  +  
Sbjct: 1   MIVDDHLLIRAGIKLLLKNTSAYTVTAEAES-----GEEALRLLAQQPIDLVIMDISMPG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                 +R +       +Y  ++                          Y   T     +
Sbjct: 56  MGGLACIREIRA-----HYPAVKILVLSM---HEDEEYIYKAMQYGAMGYLPKTSADNEL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L +L    R +  +    +  +    A               LT RE E    +  G
Sbjct: 108 FDALQVLSQGRRYLSPNAQQSLMDIMFRPAEEAA-----DDPRSVLTAREREVFDELIHG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T  EIA  L +S  TV+ +   I  K     RS  +  A+RN ++
Sbjct: 163 YTITEIAEQLHLSVKTVDTHKKHIYEKLHCSRRSELVTLALRNGLL 208


>gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 22/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         L  ++     +             G         D      +D  +
Sbjct: 5   RVVIVDDHALVRQGLRLILHGVAGIEVVGEC-----SCGEDALKAAVKDRPDVMLMDVHM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
               P  L          +    ++    +   +F              +       D +
Sbjct: 60  ----PQGLDGITTARHLRQIAPQVR---VIMLTMFDDRAHVEKMLDAGVSGIVFKHDDSS 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +    P    + R           +                 L+ RE E L  ++
Sbjct: 113 EIVAAIQHGQPGRPYLSRR----------WGQRANAETVSPSRTAERLSPRETEVLVLLA 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T+ E+A  L IS  TV  +   IMR+    +R+  + YA +N +V
Sbjct: 163 QGYTNREVADALHISVKTVETHRQHIMRRIGLHSRAALVRYAYQNGLV 210


>gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
 gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22]
          Length = 234

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 10/223 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             +    D+          ++            G      VR        +D  +     
Sbjct: 5   PRVVIADDMALVRTGFRMILAADGMDVVAEAADGVEAVDAVRRTRPDVVLMDIRMPELDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  +    F          +     +         +   
Sbjct: 65  LEATRRILAD-------TGHAPRVVILTTFDLDRYVYAALSAGAAGFLLKDTTPEHLVAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L+     ++       +       A               LT RE + L  ++ G  +
Sbjct: 118 VRLVRSGDALLAPAITRRL---VERFARQDAPATPRHRDLAALTPRERDVLRLLAGGLNN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  LG+S  TV  ++A I+ K   + R  A+  A R  +V
Sbjct: 175 AELADHLGLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGLV 217


>gi|297201836|ref|ZP_06919233.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717312|gb|EDY61346.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 241

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 78/241 (32%), Gaps = 26/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  +     + V     R++        +  V        + +        ++   
Sbjct: 25  VRVVLVDDHRMFRTGVQAEIGRTE--------ETGVEVVGEAADVDQA-----VTVITAT 71

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      +++R  A    D    V      L   V     + I    G  
Sbjct: 72  RPEVVLLDVHLPGGGGVEVLRRCAPLMADAEQPV----RFLALSVSDAAEDVIGVIRGGA 127

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
             Y + T     +   +  +     +           LA +  + F S D     +    
Sbjct: 128 RGYVTKTITGTDLVDSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLDR 180

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    +
Sbjct: 181 LTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRL 240

Query: 246 V 246
           V
Sbjct: 241 V 241


>gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
 gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           217]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 19/217 (8%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
              +  L +     H      +              +  D       ++  +    L + 
Sbjct: 8   RQFLDDLRDRFELDHVAYAGMNPISGASHG---HMTYGEDWTAHYLQNKYYEIDPTLLKA 64

Query: 106 TELFCPVFHTLPEN---------ITPPAGMD-NRYCSLTFDVARIRIGLML----LFPKG 151
                PV     E               G+                 GL +       + 
Sbjct: 65  RHSIAPVDWHRLERGAEFQTIFRDARDFGISDRGLTIPIHGPYGDVGGLSINRDCSDREW 124

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVI 209
            +++ + + ++   A +  +M    D          L+ RE+E L W + GK+  +I  I
Sbjct: 125 HLLISEIIGDLQSAAVHMHDMVIQADPLTRMLNSPSLSTREIEILQWTAAGKSQQDIGDI 184

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++ S  +K    T   AI  A+   ++
Sbjct: 185 LSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221


>gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 218

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 15/227 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   + +AR    +                G     +V         LD  +
Sbjct: 5   RVMVVDDHPMWREGVAR-DLAEAGHQVVASCGE-----GRQAVRVVAAARPDVVVLDLQL 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +++R +  +          +   L           +         Y   +  +A
Sbjct: 59  PDVSGVEVIRGLRAAW--------PQVRVLMLSASGEQQGVLDAVKAGATGYLLKSAALA 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +        +     L  + L    +       +        LT RE E L  ++
Sbjct: 111 EFLDAVRRTAAGEPVFTPG-LAGLVLGEYRRLAAAGGPEPGQDTAPRLTERETEVLRLVA 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G +  +IA  LG+S  TV N++ + + K     R     YA+   +
Sbjct: 170 KGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 216


>gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 215

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 9/183 (4%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G +    +         +D  +      + V  +  +              L   ++   
Sbjct: 37  GEAALQQLPGAAPDLVLVDINLPHMSGIEFVSRIKETTPGLLC--------LMLTMYEES 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P            Y         I  G++     G  +      ++        +   + 
Sbjct: 89  PLIFDALKAGACGYLLKRTPPREIVAGIVQAHAGGSPMSPQVARQVVSFFHRVTDT-ATT 147

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   L  RE E L  +S+G    EIA  LGIS +TVN++I  I  K   ++R+ A
Sbjct: 148 APPDPEMSALAEREREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQA 207

Query: 237 IAY 239
           +A 
Sbjct: 208 VAK 210


>gi|114764851|ref|ZP_01444033.1| autoinducer-binding transcriptional regulator LuxR [Pelagibaca
           bermudensis HTCC2601]
 gi|114542737|gb|EAU45760.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           HTCC2601]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 61/225 (27%), Gaps = 21/225 (9%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +            + + +G  H +         Q         +  D +         + 
Sbjct: 1   MQRLEDLQHITEQMRDCLGVDHLVYHWIGAQGAQYG----CGTYTPDWLARYVAQGYLRV 56

Query: 99  YNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             V+Q   + F PV     +           +       +  +               + 
Sbjct: 57  DPVIQGCFQRFHPVDWKALDWSSKAARAFLKDALRHGLGNQGFTVPIRGPNGQFALFTVN 116

Query: 148 FPKGRIILRDRLW----EIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGK 201
                 +    +     E+ L A                     L+ RE++ +  ++ G 
Sbjct: 117 HGCEDALWSSFIAQWRAELILAAHGINAKALELMPGPASQAPVALSPRELDAMRLLASGL 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++A  L IS +TV  YI     K      + A+A A+   ++
Sbjct: 177 SRAQVAAELNISEHTVRVYIEGARFKLGALNTTHAVARAMSCGLI 221


>gi|21220239|ref|NP_626018.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788647|ref|ZP_05527078.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289772542|ref|ZP_06531920.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|5531455|emb|CAB50960.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702741|gb|EFD70170.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     +  + E   G                +D  +     
Sbjct: 4   RLLIVDDQELIRTGFRLFLQTQNDLEVVGEADDGHGALAQAAALRPDVVLMDIRMPRMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +  S+             L    +              + +        R+   
Sbjct: 64  VEATSRLTASDSPP--------RVLILTTYDLDEYVFGALRAGASGFLLKDASRDRLLEA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +       A               LT RE E L  ++ G ++
Sbjct: 116 IRVVHAGEALLSPSITRRLI---EDYATRAAPVRPREAVLAGLTPREREILLLVARGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV +++ S+  K   + R+ A+ +A  N IV
Sbjct: 173 PEIAARLVVTEATVKSHVGSMFAKLHLRDRAQAVVFAYENAIV 215


>gi|304404077|ref|ZP_07385739.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304347055|gb|EFM12887.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 220

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 18/231 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + +  ++ LD  +             G + + +   +      +D  
Sbjct: 2   IRLLLVDDDPFIRESMQVILGLDPELEVVGTC-----ADGRAAYEMALQNEIDVVVMDMR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +      +    +     L    F              N Y       
Sbjct: 57  MPGCDGVEGTRLLK---LMERPPAV-----LVLTTFDDDEYIAAAIRNGANGYMLKNVSP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----DFELTGREVE 192
           +RI  G+  +     +I  D   ++  +    A+                 F LT  E  
Sbjct: 109 SRIVSGIKTIHEGTLLIHPDVARKLAGMIGNGASRPAPEAQAVEPKRELAPFGLTAAEQS 168

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +  I++G ++ EIA  L +S  TV NYI+ I+ K   + R+    + ++ 
Sbjct: 169 IVRHIADGLSNKEIAASLFLSEGTVKNYISDILNKLELRDRTQIAIFYLKL 219


>gi|27468887|ref|NP_765524.1| response regulators of two-component regulatory [Staphylococcus
           epidermidis ATCC 12228]
 gi|81842572|sp|Q8CN75|NREC_STAES RecName: Full=Oxygen regulatory protein nreC; AltName:
           Full=Nitrogen regulation protein C
 gi|27316435|gb|AAO05610.1|AE016750_215 response regulators of two-component regulatory [Staphylococcus
           epidermidis ATCC 12228]
          Length = 218

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    + +  +      V    ++                  
Sbjct: 1   MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLE---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++           +  +   K          L   +F              
Sbjct: 45  ----HRPDVLILDLSMPPGESGLIATS--KISESFPETKILILTMFDDEEYLFHMLKSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++ + +  ++     +       + +      +              L+
Sbjct: 99  KGYILKNSPDEQLILAVRTVYQGETYVDMKLTTSL-VNEFVNQSQTDEVSSSSDPFKILS 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 158 KRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216


>gi|302542220|ref|ZP_07294562.1| nitrate/nitrite response regulator protein NarL [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459838|gb|EFL22931.1| nitrate/nitrite response regulator protein NarL [Streptomyces
           himastatinicus ATCC 53653]
          Length = 258

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  ++L  +       ++      D    +    C                         
Sbjct: 45  QWRVLLVDDHPLFREGLAAALNLDDAFTVVGQAACADEAVAEAGRAA------------- 91

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +              +   +       +      
Sbjct: 92  --PDLVVMDLGLPGRSGLEATRRILCAR--------PGARVMVMTMSEDDDSLLAAVRAG 141

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         I   L  +   G +        +G+L                    L
Sbjct: 142 ARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGVLLG-----ASGAASAKEAFPTL 196

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  ++ G    +IA  L ++  TV N++ SI  K     R+ AI  A    +
Sbjct: 197 TAREREVLDLLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVHDRAQAIVRAREAGL 255


>gi|296877022|ref|ZP_06901064.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296431966|gb|EFH17771.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 210

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + L   +S    +  + E   G     L   +      +D ++      
Sbjct: 3   ILLVDDHEMVRLGLKSFLSMQTDIEQVLEAQNGQEGVELALKERPDVIIMDIVMPELNGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 +    +    +           Y   T     I   +
Sbjct: 63  DATLAILKEW--------PEAKIVILTSYLDNEKIYPVLDAGAKGYILKTSSATEILHAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +            +   +S   H     +LT RE + L  +++G  + 
Sbjct: 115 RKVAKGEFAIETE-----------VSQKVESRKNHAELHDDLTARERDILALLTKGYENQ 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 164 RIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFRHHLV 205


>gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
 gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator
           protein [Reinekea sp. MED297]
          Length = 217

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 33/245 (13%)

Query: 5   IQQV--NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
           ++Q   +++L  +D +    ++ +   SDL   +   +        +             
Sbjct: 1   MEQTLYSVMLVEDDAEIRERLAAIIFSSDLFQLVYQGEDATGSIAALKR----------- 49

Query: 63  LVRWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       D  +   +   D+++ +     D    V+          F       +
Sbjct: 50  ----HKPDILLTDLCLSKDESGIDIIQAIDKLNLDTQAMVI--------TGFQDEHLVFS 97

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y         I   +  +   G  I         ++A      F        
Sbjct: 98  ALQAGAKGYLLKHDPEQNILEAINTMLNGGAPISP-------IIARLMLQKFHRNTPTPK 150

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT R+V+ LT++S+G +S EIA  L +S +TV  +I +I  K    +R+ A+  A 
Sbjct: 151 TPETLTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKNIYAKLQVNSRTEALHEAA 210

Query: 242 RNNIV 246
           +  I+
Sbjct: 211 KLGIL 215


>gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 63/231 (27%), Gaps = 12/231 (5%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R   V            ++  D                G      VR        +D
Sbjct: 3   SPPRVVIVDDQALVRSGFRMILAADGIDVVAEAAD------GGQAVDAVRRTCPDVVLMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +              P  +    F              + +     
Sbjct: 57  IRMPEMDGLEATRRILGGRPIDAAAA---PRVIILTTFDLDRYVYAALTAGASGFLLKDV 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + L+     ++       +       A+              LT RE+E L 
Sbjct: 114 SPEHLVAAVRLVRMGDALLAPAITRRL---VERFASRDSGAARLHRDLSALTPRELEVLE 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++G ++ E+A    +S  TV  ++A I+ K   + R+ A+  A    ++
Sbjct: 171 FLAQGLSNAELAARFQLSEATVKTHVARILAKLQVRDRAQAVIVAYETGLI 221


>gi|326801202|ref|YP_004319021.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551966|gb|ADZ80351.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 216

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 9/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       +   +     +  + E       L +     + Q +D+IV      D
Sbjct: 4   IILVDDHHIVRQGIRTLLEIESDITVVGETDQQEELLFLLN---ERQTVDAIVMDINMPD 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                        Y  +     +   +                 Y         +   + 
Sbjct: 61  TDGITLTKHIKNLYPGIHI---IVLSMMDHEKYVSQAFEAGATAYLIKNVSRDELLFAIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   I  +  +++   A        S       D ++  RE+E L   ++G T+ E
Sbjct: 118 FAAQGEPYICAEISFKLLRQAMKVV---PSSASANATDLQINNREMEVLALTADGFTNQE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L  S+ TV  Y  S++ KT  +  +  I YA +N I+
Sbjct: 175 IAERLFTSKRTVEGYRQSLIEKTGVRNTAALIKYAYQNGIL 215


>gi|332708630|ref|ZP_08428603.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352586|gb|EGJ32153.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 211

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 19/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S    +  + E   G     L          +D  +     
Sbjct: 3   RLLLADDQPIFRQGLAALLSLEDDLEVVGEANHGEEAIALTERLQPDIILMDVRMPICDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 L    F                Y   +    ++   
Sbjct: 63  VQATREIHTRYPWI--------RILVLTTFDNDDYVFQSLQAGALGYLLKSTPAPKVAAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEG 200
           +  L      +          +A    +   +      K     +   RE++ L  + +G
Sbjct: 115 IRSLHQGYSQLGP-------TIAPKVFSQLNNTQPEREKTDYHAQFNQRELQILKLLGQG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           K++ EIA  L ++  T+ N++ +I  +   + R+ A  +A ++
Sbjct: 168 KSNREIAAALNLTEGTIKNHLTNIFCELDVRDRTQAALWAHQH 210


>gi|330721944|gb|EGG99887.1| Nitrate/nitrite response regulator protein [gamma proteobacterium
           IMCC2047]
          Length = 217

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 29/235 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +I+L  +       V+ L                                    L     
Sbjct: 8   SIILVDDHPLFRKGVAQLVEDDKHFTLAGEASNAKD---------------GIALAEQLN 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      + +  +                 +   V +   + +       +
Sbjct: 53  PDVILMDLNMKEMNGIEALTELRARGIT--------AVVVIFTVSNHEKDILAAMKAGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L L      ++      E+  +  +      +          LT 
Sbjct: 105 GYLLKDCEPEDLMEKLRLAATGKSVLDD----ELVQIVTHALRE--NKPTPPSSKNLLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++  K++  IA  LGI+  TV  ++ +++RK   K+R  A  +A+ N
Sbjct: 159 RERDILDLLAACKSNKVIANELGITDGTVKVHVKNLLRKLNLKSRIEAAVWALEN 213


>gi|315126223|ref|YP_004068226.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315014737|gb|ADT68075.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 216

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +         +                    G       R  
Sbjct: 2   INVLLVDDHELVRTGIRRILDDIRGFKVIGEAKT---------------GEEAVQFCRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +     A  +  +Y   ++    +   V    P          
Sbjct: 47  APNIVLMDMNMPGMGGLE-----ATKKVCRYCPDVKI---IVLTVNCEDPFPSKVMQIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +       +   +  +    R I  +       +A   A    +          L+
Sbjct: 99  HGFLTKGAGSDEMVRAIRCVHAGQRYIAPE-------IAQQIALAQVTGRTDENPFQSLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+ + +IA  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 152 ERELQIMLMITKGEKAQDIAERLNLSSKTVNSYRYRMFEKLNVGGDVELTHLAIRYKMI 210


>gi|269102848|ref|ZP_06155545.1| BarA-associated response regulator UvrY [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162746|gb|EEZ41242.1| BarA-associated response regulator UvrY [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 214

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  L      +  +   D          A               +
Sbjct: 2   INVFLVDDHELVRTGIRRLLEDVRGIKVVGEADSGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   V    P          
Sbjct: 47  HADIILMDMNMPGIGGLEATRKILRFNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   + ++    R I  +   ++ L         +          +L+
Sbjct: 99  SGYLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMAL--------SQFASNSENPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHGML 209


>gi|116626889|ref|YP_829045.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230051|gb|ABJ88760.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 215

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 57/230 (24%), Gaps = 17/230 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  ++             +     G       R        +D 
Sbjct: 2   AVRILLADDHTMMRQGLRHILESRPDFDIVAEASS-----GIEAVEAARTHKPDVAIVDV 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +          +      L   ++      +         Y      
Sbjct: 57  AMKELNGIEATAQILK--------ISPHTAVLILSMYSDERYVLRAVKAGARGYVLKNSA 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +                 +        +       +   LTGRE +    
Sbjct: 109 GDELIQAIHAVQRGLAFFSPAVAR----IFQDGVARLQDAREVSDRFESLTGRERQVYQL 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG ++ EIA  L +S +TV  +   IM K    + +  +  AVR  +V
Sbjct: 165 LAEGNSNKEIANRLNLSLHTVETHRWHIMEKLDLHSTAELVLSAVRRGLV 214


>gi|296877165|ref|ZP_06901205.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|322390755|ref|ZP_08064267.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|296431685|gb|EFH17492.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|321142582|gb|EFX38048.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 74/215 (34%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +         +    D         +   D I+       +   
Sbjct: 5   VMVADDQALIRESLKIILSAHPDIEVVATVEDGNHVLSSIPQTHPDLILMDIRMPGMDGV 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A  E  ++Y  ++    +    F       +      + Y         +   + +++ 
Sbjct: 65  LATKEVKEHYPDIKI---IILTTFDDDEFIYSALKYGASGYLLKGASTEELYEAIKVVYQ 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  + +  A    S  V      +L+  E   +  +  G+++ EIA  
Sbjct: 122 GGAMINPNIASKVFQIFSQMAKTNFSIAVDEDNVKDLSTTEWRIIQEVGYGESNKEIAAK 181

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  TV NY+++I+ K   + R+    ++V+  
Sbjct: 182 LFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQTG 216


>gi|328884518|emb|CCA57757.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 236

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 77/243 (31%), Gaps = 28/243 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVR 65
           +V +VL  +     + V     R++                 +  + E         ++ 
Sbjct: 19  RVRVVLVDDHRMFRTGVQAEIGRTE--------------VTGVEVVGEAADVDQAVTVIT 64

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   LD  +      +++R  A         V      L   V     + I    G
Sbjct: 65  ATRPEVVLLDVHLPGGGGVEVLRRCASLMSATEDPV----RFLALSVSDAAEDVIGVIRG 120

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
               Y + T     +   +  +     +           LA +  + F S D     +  
Sbjct: 121 GARGYVTKTITGTDLVDSIFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDM 173

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A   
Sbjct: 174 DRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATAR 233

Query: 244 NIV 246
            +V
Sbjct: 234 RLV 236


>gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 211

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 16/210 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D   S    +  + E        L        D+ +++  D ++       +    
Sbjct: 6   VLIVDDDKSVLDGLKIILELENFEVVGLCTNAKDAMDIVKQKNPDVVLMDIRMPVMDGIE 65

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                   +  ++    +    F          +   + Y   + D   I   ++ +   
Sbjct: 66  GTFNIKTKFPNVK---VIILTTFCEEDYIEKSLSFGADGYILKSSDAKHIVNSILSVLDG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVI 209
             ++ ++       +A Y +++ K     + +  + LT RE+E    IS+G ++ EIA +
Sbjct: 123 KVVMDKE-------IALYISDVLKRTSKQYFEKTQNLTERELEIAKLISQGYSNKEIARM 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L IS  TV NYI SI++K   K R+    Y
Sbjct: 176 LFISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|239934239|ref|ZP_04691192.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291442685|ref|ZP_06582075.1| two-component system regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345580|gb|EFE72536.1| two-component system regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S    L    D +  +                    G+    L R  
Sbjct: 2   IRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAAD---------------GSEGLDLAREH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      +  R +A          L     +    +              
Sbjct: 47  LPDVALVDIRMPVVDGIEATRRIAA------DPALAGVHVVILTNYGLDEHVFDALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +             + +      ++      ++  +  Y A    +      +   LT
Sbjct: 101 AGFLVKDVVPEDFLHAVRVAARGDALLAPSITRKL--INRYVAQPPPTGTGAGLE--GLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +++G ++DEIA  + IS  T   ++   M K   + R+  +  A  + +V
Sbjct: 157 DREREAVALVAQGLSNDEIAGRMVISPLTAKTHVNRAMTKLRVRDRAQLVVLAYESGLV 215


>gi|332851497|ref|ZP_08433494.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332866803|ref|ZP_08437207.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332874937|ref|ZP_08442788.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|332729950|gb|EGJ61281.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332734411|gb|EGJ65531.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332736880|gb|EGJ67856.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     +VR  
Sbjct: 18  ITVLVVDDHELVRTGICRMLEDHADVEVIGQAES---------------GEEAIAIVRQQ 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  +              +        P          
Sbjct: 63  HPQVVLLDVNMPGIGGVETTRRLLQTA--------PETKVIAVSGLAEEPYPSLLLKAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 115 KGYITKGAPIAEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDSLS 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K    +       A+R  ++
Sbjct: 167 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLI 225


>gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 221

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 6/223 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +     M  + +   G      VR        +D  +     
Sbjct: 4   RVLLVDDQVLVRAGLAMVIDSQDDMRVVAQAENGREAVEAVRAHAVDVVLMDIRMPVLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +           +   T +    F T    +T      + +         +   
Sbjct: 64  LSATQEIVALGDAGALPQVP--TIIVLTTFDTDDYALTALRSGASGFLLKDARPEVLLDS 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G +I       +              D H  K   LT RE E    ++ GK++
Sbjct: 122 IRQAHVGGAVIAPTTTRRL---LETVVAAPTVPDEHAQKLERLTAREREVFELVARGKSN 178

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  +++ I+ K   + R  A+ +A    +V
Sbjct: 179 AEIAGELFMAGPTVKTHVSHILTKLEVRDRIHAVIFAYEAGVV 221


>gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa]
          Length = 241

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 15/214 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
            M P+  +      +      +G  ++           +  + V   +P   +    +  
Sbjct: 17  EMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQN 76

Query: 95  KDKYYNVLQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                  +         V           +  N     G+             + + ++ 
Sbjct: 77  YGAVDPAILNGLRSSEMVVWSDRLFDQSRMLWNEARDWGLCVGATLPIRAPNNL-LSVLS 135

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEG 200
           +    + I      EI L       +         + +       L+ RE E L W ++G
Sbjct: 136 VARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADG 195

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           K+S EIA+IL IS +TVN +  +I +K     ++
Sbjct: 196 KSSGEIAIILSISESTVNFHHKNIQKKFDAPNKT 229


>gi|297194274|ref|ZP_06911672.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152196|gb|EDY64473.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 256

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +    E   GAS   LVR        +D  +      
Sbjct: 45  VLLVDDEPLVRAGLRAVLEAQPDIEVAGEAADGASVIPLVRQLRPDVVAMDVRMPLMDGI 104

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +           P  L    F              + +       A I   +
Sbjct: 105 EATRAVLRT---VDDP----PKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAV 157

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L+     ++    +  +   A Y  +  ++          LT RE   L  ++ G ++ 
Sbjct: 158 RLVAEGESLLFPAAVRSLA--AEYGNSAARTAMERAA----LTEREAAVLRLMARGLSNS 211

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 212 EIAAQLFVGTETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 253


>gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 17/228 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
           A+++ +D        +    +  G     +        + +      +V SD     V  
Sbjct: 3   AQLLLVDDEPGLREAVKEYLQESGFG-VRVASNAREGWELIQQNTPDLVISDIMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL----- 144
               ++ +    L     +F        + I       + Y S  FD   +   +     
Sbjct: 62  YQFLKQLRDDPRLASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLLE 121

Query: 145 -----MLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                  +  +    +       EI  +                   +LT RE   L  +
Sbjct: 122 KRISQTTVAGEDSENMEIAKLAHEIAKIKDLLTPRTGISQTPPPFTIDLTPREQSVLNLV 181

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 AQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|59712234|ref|YP_205010.1| response regulator [Vibrio fischeri ES114]
 gi|197335434|ref|YP_002156448.1| response regulator UvrY [Vibrio fischeri MJ11]
 gi|34978694|gb|AAQ83589.1| GacA [Vibrio fischeri ES114]
 gi|59480335|gb|AAW86122.1| DNA-binding response regulator in two-component regulatory system
           with GacS [Vibrio fischeri ES114]
 gi|197316924|gb|ACH66371.1| response regulator UvrY [Vibrio fischeri MJ11]
          Length = 214

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E   + +  +      +  +   D                          +
Sbjct: 2   IKVFLVDDHELVRTGIRRILEDVRGIKVVGEADSGEDAVKWCRT---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   +    P          
Sbjct: 47  QADIVLMDMNMPGIGGLEATKKILRFNPD--------VKVIVLTIHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R +  +   ++ L         +          EL+
Sbjct: 99  AGYLTKGAGPDEMVNAIRMVQSGQRYLSPEIAQQMAL--------SQFTPDAENPFKELS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMMMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLNISGDVELTHLAIRHGIL 209


>gi|71068215|gb|AAZ23070.1| possible response regulator [Streptomyces fradiae]
          Length = 241

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 66/241 (27%), Gaps = 27/241 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V+  + E   +    L   +  +  +            +  L                
Sbjct: 10  RVVIADDQELVRTG-FRLILSARGIDVVGEAGDGAEAVAAVRRL---------------R 53

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R +                 +    F          A   +
Sbjct: 54  PDVVLMDIRMPVMDGLEAARRVLAQA--------ADCRVIMLTTFDLDHYVYAALAAGAS 105

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFE 185
            +       A +   + L+     ++       +       A       +          
Sbjct: 106 GFLLKDVTPAHLAAAVRLVGTGDALLAPSITRRLVERFTSGARGTGTGAATPAVHRDLAA 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT +  G ++ E+A  L +S  TV  +++ I  K A + R+ A+  A    +
Sbjct: 166 LTPREREVLTLMGRGLSNAELARELTLSEATVKTHVSRIFAKLALRDRAQAVVLAYETGL 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
          Length = 191

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 16/189 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G +   L    +     +D ++      + +R +          V  R   +    +H  
Sbjct: 8   GENATDLAAELVPDIVLMDLVMPGISGVEAIRMIKQ--------VSPRSQVIVLTSYHED 59

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y     +  ++   +        I+           AA   N  ++ 
Sbjct: 60  EYIFPALRAGAISYVLKDIEPNQLVETVRRGVQGESIMHPRV-------AARVVNEIRAM 112

Query: 177 DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  F EL+ RE+E L  I+ G T+ EIA  L IS  TV  ++++I+ K     R+ 
Sbjct: 113 KQASPYPFSELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTK 172

Query: 236 AIAYAVRNN 244
           A  +A    
Sbjct: 173 AAVFAWEQG 181


>gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 221

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 23/240 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +       +    +  L              
Sbjct: 2   PVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +       V + P  +    F             
Sbjct: 48  -RPDVVAMDVRMPLMDGIEATRAVLRT-------VERPPKIVVVTTFENDEYVYEALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    + ++                   +  +L
Sbjct: 100 ADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAQYG-GDEDGNRAARAAMERAQL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV ++++ ++ K   + R+ A+  A  +  V
Sbjct: 159 TEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESGFV 218


>gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 218

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R   +              R  A                 
Sbjct: 5   RILIVDDHPLFREGLKTILRRDAGIVIAGEAGSATEAVRRARACA--------------- 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +       LVR +           L                 I       N
Sbjct: 50  PDVALLDISLPDRSGMQLVRELRALL-----PDLGILMVSMHTKVD---YIIEAVKAGAN 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +      ++   L  +      +      E+           K+          LT 
Sbjct: 102 GYVTKDAAADQLLEALRQVGRGAFYLDPTISQEVS--RELLVGSPKAQAAPANAYDNLTA 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E +  + EG T+ E+A  L IS  T  ++  ++MRK   +     + YA R  ++
Sbjct: 160 REREVMRMVVEGLTTKEVAEALAISVKTAEHHRCNLMRKLGLQNSVELVRYASRLGLI 217


>gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 244

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 78/246 (31%), Gaps = 16/246 (6%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L              P  S LLA ++ ++       R+ ++   +G     +     
Sbjct: 6   RVALASTRFLYYMAADTFPPESSLLAPVLLVEDEPLIQRRLDSMLRQLGYQRDAIAFAAS 65

Query: 69  FQEQKLDSI-------VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI- 120
            ++ +           +      D      ++E       L            +  + I 
Sbjct: 66  LKQARAHLANQPFALALVDIGLPDGSGIDLIAEMHAADAALPILVISA----WSTEDAIL 121

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y     D   + + +  +   G  I       I      + ++  S     
Sbjct: 122 AALRAGATGYVLKERDDMEVVLSIRSVLRGGAPIDPFIARRI----IDEFHLGSSQQAQT 177

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L+ RE E L  +++G  + EIA  L +SR TV  +I  I RK A  +R+ A+  A
Sbjct: 178 QQCETLSPREGEILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAVHEA 237

Query: 241 VRNNIV 246
               ++
Sbjct: 238 RSRGLL 243


>gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 153-1]
          Length = 230

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 67/243 (27%), Gaps = 31/243 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDSGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A    ++ 
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQ 221

Query: 244 NIV 246
            I+
Sbjct: 222 RII 224


>gi|150389373|ref|YP_001319422.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949235|gb|ABR47763.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 212

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 33/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E + V I+L  +       +  L  R+D L              ++  L          
Sbjct: 1   MEKKSVTILLVDDHAIVRYGIRSLIERNDGLKVCGEAGTLQEAYHKVSDL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +         R +           +     +    +      +  
Sbjct: 51  -----KPDIVLLDIKLPDGDGAAGCREIKKR--------VPDVKVIILTAYAEDSIILEA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     D   I   +  +      +  + + ++                +   
Sbjct: 98  VKAGAEGYLLKDIDSKNIITAIRNVVGGKTSLANEAISKV----------LNEVKQNCSG 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +LT ++   L  IS+GK++ +IA  + +S  TV N  + I +K     R+ A  Y  +
Sbjct: 148 EDDLTSQDKSILELISQGKSNKDIAKEIYVSEKTVRNNASRIFKKINAGNRTEAAIYWSK 207

Query: 243 NNIV 246
             I+
Sbjct: 208 RKIL 211


>gi|298249284|ref|ZP_06973088.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547288|gb|EFH81155.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 216

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 17/223 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +        + E   G    LL          +D ++      
Sbjct: 7   ILIVDDHAVVRRGVQAFLEAQPDFAVVGEAGSGGEAVLLATDLAPDVVLMDLVMPGMDGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +                 +    +H               Y      +  +   +
Sbjct: 67  QATRLVKQKSPGSQ--------VIVLTSYHEDEHIFPAIRAGALSYLLKDIGLPDLADAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTS 203
                   ++          +AA                F +L+ RE E L  I+EG ++
Sbjct: 119 RKAACGEVVMHPH-------IAARVVQELDGASHPDMASFAQLSEREREVLRLIAEGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV +++ +I+ K     R+ A  +A R  ++
Sbjct: 172 AAIADRLVLSEKTVKSHVRNILGKLHLVDRTQAAIFAWRQGLM 214


>gi|237746871|ref|ZP_04577351.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
 gi|229378222|gb|EEO28313.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
          Length = 214

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       +  +   ++ +                       G S    VR  
Sbjct: 2   IRIVIADDHTLMREGLKRILEGNEEITVAGEAVD---------------GFSVLAQVRKG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      DL+R +             +   L   ++      +       
Sbjct: 47  GFDVLLLDLSMPGRSGIDLIRQIRTEA--------PKLPVLVLTMYEEEQYAVRSIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     +++   +  +      I  +    + L                    +L+
Sbjct: 99  QGYLTKESAGSQLVTAIKRVASGRPYISMEVAERLALDIMTPEKEL--------PHKQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++ GK+  +IA  L +S  TV+ + + I+ K    + +  + YA+ +N++
Sbjct: 151 NREFEIFNMMASGKSITDIATQLHLSVKTVSTHKSRILAKMDMHSLAEIVQYAIAHNLL 209


>gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 17/228 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           A+++ +D        +    +  G     +      WDL Q+   D +  SD     V  
Sbjct: 3   AQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLV-ISDVMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF- 148
               ++ +     Q    +F        + I       + Y    FD   +   +  L  
Sbjct: 62  YQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLLI 121

Query: 149 -----------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                            + +   +I  + A                 +LT RE   L  +
Sbjct: 122 RRNSKPQKTTEEGETPDIAELANQIAQIKALLTQRNAISQSPAPFKIDLTPREQSVLNLV 181

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 AEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 233

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 14/226 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
           A ++ +D   S    + A  EY G     +        + L      ++ SD     V  
Sbjct: 6   ATILLVDDEPSVRESVQAYLEYSGNLTVKVASNATNAWEILQTIIPDVIISDIMMPEVDG 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               EK +     Q    +F        + I       + Y    FD   +   +  L  
Sbjct: 66  YQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKPFDPEELEAIVNNLLE 125

Query: 150 KGRI--ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--------LTGREVECLTWISE 199
           + ++         ++  +A     + +                   LT RE   L  ++E
Sbjct: 126 RRKVNGKAGSDSAKLEEIAQEIRELKEQLGQQQNNLTTTPPPIKIDLTPREQSVLDLVAE 185

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 186 GLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 231


>gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 234

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 66/241 (27%), Gaps = 23/241 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R           + +  ++ L   ++            G     LV         +
Sbjct: 3   DGPIRVVVADDQTVVREGIVMLLGLLPGITVVGSA-----PDGEEALRLVAEHAPDVVLM 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  R +                 +    +       +        + +  
Sbjct: 58  DLRMPRCDGVEATRRIRA--------GHPGTEVVVLTTYADDDSLFSALQAGARGFLTKD 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEI----------GLLAAYQANMFKSYDVHWGKDF 184
                I   +  +      +       +             A                  
Sbjct: 110 AGAEEIARAVADVRSGAAGLSPQVQLRLLERLAGPAAAPEPAPVATEAAPEAVRRPSLPD 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G ++ EIA  L +S  TV  +I ++  KTA + R+ A+AYA R+ 
Sbjct: 170 GLTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTAVRDRAQAVAYAFRHG 229

Query: 245 I 245
           I
Sbjct: 230 I 230


>gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 211

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 60/212 (28%), Gaps = 12/212 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-----KLDSIVSSDWPFDLVRCMALS 93
           +D    W   +       G +            +     K D +V      D     A +
Sbjct: 3   VDDHPIWRDAVARDLAEGGFTVVATADGVAAAGRRAAVVKPDVVVMDMQLPDGNGAQATA 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                    +              + +         Y   +   + +   +        +
Sbjct: 63  AVLAASPSTRVL---VLSASDEREDVLEAVKAGATGYLVKSASKSELAQAVTATAAGRAV 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                   +  L   +                LT RE E L ++++G ++ +IA+ L +S
Sbjct: 120 FTP----GLAGLVLGEYRRIAQSKDDGPARPSLTERETEVLRYVAKGLSAKQIAMKLSLS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV N++ +  RK     R     YA+ + +
Sbjct: 176 HRTVENHVQATFRKLQVANRVELARYAIEHGL 207


>gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 211

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S       + E   G     +          +D  +     
Sbjct: 5   RILIADDHPIVRAGLVGLLSTQEGFQVVGEASSGLEAVQMADALRPNVVLMDLRMPGMGG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 L    + T  E +         Y         +   
Sbjct: 65  TAATRAIRSR--------FPEVQVLVLTTYDTDTEIVRAIEAGAIGYLLKDVPREELYKA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +               +    D  L+ RE+E L+ +++G ++
Sbjct: 117 IYASAHGESVLSPPVAARLL------------GRMRAPSDESLSTRELEVLSLVAKGLSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++     K     R+ A+  A+   I+
Sbjct: 165 KEIARELKISEATVKTHLLHTFGKLGVDDRTAAVTVALERGIL 207


>gi|50842410|ref|YP_055637.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50840012|gb|AAT82679.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315105495|gb|EFT77471.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 218

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +++        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVLKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     + 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNAEA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q +      V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQGS-----TVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|320009015|gb|ADW03865.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 231

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     R++        +  V        + +        ++  
Sbjct: 14  RVRVVLVDDHRMFRTGVQAEIGRTE--------ETGVEVVGEAADVDQA-----VTVITA 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A         V      L   V     + I    G 
Sbjct: 61  TCPEVVLLDVHLPGGGGVEVLRRCAPMMGAVENPV----RFLALSVSDAAEDVIGVIRGG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 117 ARGYVTKTITGTDLIDSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 229

Query: 245 IV 246
           +V
Sbjct: 230 LV 231


>gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti]
          Length = 241

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 21/230 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
                LL ++      V +   +           F  +        K    + S++    
Sbjct: 3   LVFETLLEQLSLSVDEVDFHNALANAAGAFDIPAFAYLSLVSDGVTKPR--LISNYHSGW 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSL 133
                  + ++   V++R     CP                    +     G+       
Sbjct: 61  TSHYLRHQYERIDPVIERARCSECPFQWGRGFGHAGISKREQQLFDEAAEFGICCGLTIP 120

Query: 134 TFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAA--YQANMFKSYDVHWGKDFELT 187
             D       +     +       I       + ++A   +     K           LT
Sbjct: 121 LVDRRGGVAAMTFAADRLDPSFMRIAEQYEQALEIMATCFHIGVRRKLSGGLAVDGVSLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T++ A+
Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|68535964|ref|YP_250669.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
 gi|68263563|emb|CAI37051.1| two-component system response regulator TcsR2 [Corynebacterium
           jeikeium K411]
          Length = 200

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 63/229 (27%), Gaps = 31/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++  +  +             G     L +        LD  
Sbjct: 3   IRVLLAEDQSLVRGALIALLNAEPDIEVVAEC-----ATGTEAVALAQEQPIDVALLDIE 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  + +A +          R   L    F              + +       
Sbjct: 58  MPGLNGIDAAKELAGN----------RCRCLIVTTFGKAGYVKRAMEVGVDGFIVKDTPP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R+I      E  L                  D  L+ RE E    +
Sbjct: 108 EELADAIRRVHAGLRVIDPTLAQESLL----------------TPDNPLSERETEVCQQL 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EGK+S  IA  L +S  TV N+I+SIM KT    R  A   A  N  +
Sbjct: 152 FEGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200


>gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
 gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395]
          Length = 221

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 65/237 (27%), Gaps = 23/237 (9%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  +     S V         L  +            +  L                
Sbjct: 7   RVFLVDDHGVFRSGVRAELAGEAGLEVVGDAGNVPESVAGIVEL---------------R 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +       ++R            V    +           + I        
Sbjct: 52  PDVVLLDVHMPGGGGVAVLRG-VTDALGSDAPVFLALSVS-----DAATDVIATIRAGAR 105

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y + T D   +   +  +     +        +  L ++             +   LT 
Sbjct: 106 GYVTKTIDGGELADAVRRVAEGDAVFSPRLAGFV--LDSFTGRSPVPEPQLDPELDSLTR 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +AV   I
Sbjct: 164 REMEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRNALTRWAVNRQI 220


>gi|260905348|ref|ZP_05913670.1| two-component system response regulator [Brevibacterium linens BL2]
          Length = 224

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 73/242 (30%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  +++ +  + +   +  + L      ++  +          ++ A             
Sbjct: 1   MNDISVAIADDHQLVRAGFASLLDAEPGISVSVQASGGEELLEKLAAT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +A          L     +    F      +    
Sbjct: 49  ---PVDVVLMDIRMPDGDGLWATEAIAA------DPDLGHVRVVLVTTFGLDEYIVRAVR 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +     +   +   + ++     ++  +       L +  +   ++         
Sbjct: 100 AGASGFLLKDTEPVDLIRAVRVVAEGEALLSPEVTR---YLLSRMSLGLRAEPAKH--LD 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  + +G ++DEIA  L +S  T   +++ IM K A + R   +  A  + 
Sbjct: 155 VLTQREREVLALVGQGLSNDEIAAQLVLSPLTAKTHVSRIMSKVAARDRVHLVVLAYESG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|218549608|ref|YP_002383399.1| transcriptional regulator NarP [Escherichia fergusonii ATCC 35469]
 gi|218357149|emb|CAQ89784.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia fergusonii ATCC 35469]
 gi|325498005|gb|EGC95864.1| transcriptional regulator NarP [Escherichia fergusonii ECD227]
          Length = 216

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 32/244 (13%)

Query: 1   MNF-EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           MN  E     +++  +       +  L         +                    GAS
Sbjct: 1   MNMPETTPFQVLIVDDHPLMRRGIRQLLELDPAFEVVAEAGD---------------GAS 45

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
              L          LD  +      D +  +                 +   V  +  + 
Sbjct: 46  AIDLANRLDLDLILLDLNMKGMSGLDTLNALRRDGVT--------AQIIIITVSDSASDI 97

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                   + Y     +   +   +      G++            + Y     + +   
Sbjct: 98  YALIDAGADGYLLKDSEPESLLAAIQKGANGGKVFSARV-------SEYLRERER-FGSK 149

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE++ L  +++G ++ +IA  L IS  TV  +I +++RK   ++R  A   
Sbjct: 150 DDPFSTLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAATIL 209

Query: 240 AVRN 243
            +++
Sbjct: 210 FLQH 213


>gi|330467583|ref|YP_004405326.1| two component system response regulator [Verrucosispora maris
           AB-18-032]
 gi|328810554|gb|AEB44726.1| two component system response regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  L      +  +                    G     +    
Sbjct: 2   IRVMLADDQTLVRAGLRALLQSEPDIEFVGEAAD---------------GEQTLRVAAQV 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A          L     +    F              
Sbjct: 47  RPDVLLMDIRMPRMDGIEATRRIAAR------PELSDIRIVILTTFEHDQYIFRSLRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     + A +   + ++     ++       +  +A Y A              +LT
Sbjct: 101 SGFLVKDIEPAALLQAVRVVAAGEALLAPSVTRRL--IAEYAAR--SHEPPASPGLDQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G T+ E+A  +  S  T   +++ +M K   + R   +  A    +V
Sbjct: 157 AREREVLMLIARGLTNQELAERMSCSVATAKTHVSRVMMKLGARDRVQVVVLAYEWGLV 215


>gi|319952905|ref|YP_004164172.1| two component transcriptional regulator, luxr family [Cellulophaga
           algicola DSM 14237]
 gi|319421565|gb|ADV48674.1| two component transcriptional regulator, LuxR family [Cellulophaga
           algicola DSM 14237]
          Length = 223

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 68/244 (27%), Gaps = 26/244 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + IVL  +       +  L    + L  +  +                 G     +V 
Sbjct: 3   QTIRIVLADDHSLVRDGIRALLEEEEDLVVVAEVSN---------------GKEAIDMVN 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D V  +                 +   +  +    +     
Sbjct: 48  EKKPDLLIIDIRMPIMNGIDAVEILNRQGTT--------TKTIILSMHDSEEYILKSVNA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGK 182
             N Y             +  +   G+    D    +    L  +   +           
Sbjct: 100 GANGYLLKDTGKTEFIKAIRTVQHGGKYFSGDISNVLVNNLLSGSKPISEKLKPTKSNDN 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            F+LT +E++ L  I  G T+ +I+  L  S+ TV  +  ++MRK   K        A  
Sbjct: 160 PFDLTSKELQILELILSGLTNKQISEKLANSKRTVETHRFNLMRKMDVKNLIDLSKKAQE 219

Query: 243 NNIV 246
            N+V
Sbjct: 220 FNLV 223


>gi|315093205|gb|EFT65181.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 218

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     + 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNAEA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q +      V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQGS-----TVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ +IA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAQIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 221

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 65/228 (28%), Gaps = 16/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
           T+ +S +    D       +   +        + E   GA     +         LD  +
Sbjct: 7   TTRISRVLLADDHTLLRQGMKMMLDPQPDFTVVAEAADGAQALDRINHGDIDLAILDITM 66

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  + R ++  +             L   +                 Y   +    
Sbjct: 67  PRMTGLQVAREVSQRKLP--------TPMLILSMHDNEQYLFEALKAGAAGYVHKSMADR 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +             +    +       +     +         D  LT RE E L  I+
Sbjct: 119 DLLHACRAAVRGEPFLYPGAM-------STIIREYVQRGQANEGDRLLTPREEEILKLIA 171

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG +  EIA +L IS  TV  + A+++ K   K R     YA+R  ++
Sbjct: 172 EGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIRVGLI 219


>gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 70/242 (28%), Gaps = 28/242 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     + L  +     S V     R   +  +            + A +          
Sbjct: 5   ETPPYRVFLVDDHAVFRSGVRAELGREADMEVVGEAGGVAEAVSGINATS---------- 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +       ++R +                 L   V     + I   
Sbjct: 55  -----PHVVLLDVHMPDGGGVAVLRGIESGPVC-----------LALSVSDAAEDVIAVI 98

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y + T   A +  G+  +     +        +  L ++             + 
Sbjct: 99  RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRLAGFV--LDSFTGRSNAPEPQLDPEL 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R 
Sbjct: 157 DSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRR 216

Query: 244 NI 245
            I
Sbjct: 217 RI 218


>gi|282860668|ref|ZP_06269734.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282564404|gb|EFB69940.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 220

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     +     +     M  + E   G     L R        +D  +     
Sbjct: 4   RILIADDEALLRMAFSTVLETQPDMAPVGEAADGVQAIRLARDLRPDVVLMDVRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +          +  +   L    F       T      + +         +   
Sbjct: 64  IEATRQVIR--------ISPQSRVLILTTFDLDEYAFTALKAGASGFLLKNTRPEELLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       + L          S          L+ RE E L  +  G ++
Sbjct: 116 IRSVAAGDAVVSPRITRRL-LENLRPHIPDGSSADRDEWLSRLSAREREVLIKVGCGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV +++  I++K   + R  A+ +A  + ++
Sbjct: 175 TEIAATLYLAEATVKSHLGRILQKLELRDRIQAVIFAYESRLI 217


>gi|307155198|ref|YP_003890582.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306985426|gb|ADN17307.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 248

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 71/267 (26%), Gaps = 45/267 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +VL  + +     +     ++  +  +                    G     ++
Sbjct: 1   MDKIRVVLVEDHDLSRVGLCAALQQNQDITLVGEAAN---------------GREALKVI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT--ELFCPVFHTLPENITP 122
           R        +D  +      +                 +      L   +  T    +  
Sbjct: 46  RATQPDVAVVDIGLPDIDGIE-----VTQNLKHSSPEGEELRSKVLILTMHKTEDSVMAA 100

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A   + Y      +  +   +         I       +   A   A    +       
Sbjct: 101 FAAGADSYALKDVSLDNLVQAIKATHEGNTWIDPAIARIVLKQARRDALTSATVQKVPET 160

Query: 183 -----------------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                                  +  LT RE++ L  I  G  + +IA  L I+  TV  
Sbjct: 161 VPAEPQKSVKIEGVDDEYAKLIENDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKT 220

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I+ K     R+ A   A+R+ +V
Sbjct: 221 HVRNILNKLCVNDRTQAAVRALRSGLV 247


>gi|29830013|ref|NP_824647.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607123|dbj|BAC71182.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 28/242 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRW 66
           V +VL  +     + V     +++                 +  + E         ++  
Sbjct: 27  VRVVLVDDHRMFRTGVQAEIGQTERT--------------GVEVVGEAADVDQAITVITA 72

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A    D    V      L   V     + I    G 
Sbjct: 73  TRPEVVLLDVHLPGGGGVEVLRRCAPLMADAEQPV----RFLALSVSDAAEDVIGVIRGG 128

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 129 ARGYVTKTITGTDLVNSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 181

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 182 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 241

Query: 245 IV 246
           +V
Sbjct: 242 LV 243


>gi|254228131|ref|ZP_04921560.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262393907|ref|YP_003285761.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25]
 gi|151939204|gb|EDN58033.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262337501|gb|ACY51296.1| transcriptional regulator LuxR family protein [Vibrio sp. Ex25]
          Length = 212

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 63/239 (26%), Gaps = 32/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++V+  + +               +AR+  L+  +         T   G     + + 
Sbjct: 4   PISVVIVDDHQVVL---------DGFMARL-ELEPDIEVVG-----TASNGLEAIEVAKH 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +                 L   +       +      
Sbjct: 49  LQPDVILMDISMPIMNGIEATGVIKEER--------PESKILMLTMHDNREYIMKVMQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        ++   +  +              +           +       K   L
Sbjct: 101 AVGYMLKEISAEKMVQAIKTVNQGSTYFCESVTQTL---------FTQEVVPATQKTNPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA    +
Sbjct: 152 SRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETGL 210


>gi|253990045|ref|YP_003041401.1| response regulator [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253781495|emb|CAQ84658.1| response regulator uvry [Photorhabdus asymbiotica]
          Length = 231

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     V  +      +     ++C                          
Sbjct: 12  INVLLVDDHELVRVGVKRILDDVKGITVAGEVNCGEEAIKWCR----------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D ++       +    A     +Y   ++    +   ++   P  I       
Sbjct: 55  ---VNKADIVLMDMNMPGIGGLEATKRILRYCPDIR---VIMLTIYTENPLPIKVMQAGA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 109 RGYLSKASTPQDMINAIRTVNAGQRYIAPDIAQQMALSQI--------NPQKDNPLSCLS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R  +
Sbjct: 161 DRELQIMLMITKGQKVSDISEQLNLSPKTVNSYRYRMFSKLNIGGDVELTHMAIRYGL 218


>gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 242

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 73/239 (30%), Gaps = 17/239 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI- 77
            T  V+ +  +  L                +      +G   F+L       +  +D + 
Sbjct: 1   MTCGVAEVAMQVALAVE--RATTLAGVQDALRPFAMRLGYDRFVLFSVRAVADALIDRVY 58

Query: 78  -VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---------PENITPPAGMD 127
            V  DW  D  + +          V +   E   P F T               P     
Sbjct: 59  WVEGDWWGDG-QAIDARTYLTRCPVTRHVLEARAPFFWTKTCDEKGERYRVVRRPAGAGV 117

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFE 185
           +      F    +   + L          +    + ++A    +  +            +
Sbjct: 118 HGLQLPVFGPQGLEGAMSL-GGARIDSSPEARLMLAMVATAAFHTARRLLQPPLAASATQ 176

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE E L W + G    +IA  LG+S  TV N++ +  R+    T + AI  A+ N 
Sbjct: 177 LSAREREVLRWTAAGSRQADIAATLGLSERTVENHLRAARRRLGVATTAQAIKIALHNG 235


>gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured
           bacterium 70]
          Length = 210

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 37/244 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
               ++ ++L  +          +    + +  +                    G     
Sbjct: 1   MSEAKITVLLADDHALVRRGFRRILEDDEAIDVVGEAAN---------------GDEAIA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L +        +D  +         + +     D           L   +          
Sbjct: 46  LAKSLKPAVIVMDVAMPGTNGLAATKKILADNPD--------VAVLMLSMHSEETLVRQS 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +     ++                   K   +   +
Sbjct: 98  LDNGARGYILKNALDLDLAGAVKRVAAGETVVDPSV--------------DKPPSLKGER 143

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  I  G ++ EIA  LG+S NTV  + A+IM        +  + YA+ 
Sbjct: 144 THGLTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKTAELVVYAIS 203

Query: 243 NNIV 246
           N +V
Sbjct: 204 NGLV 207


>gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 230

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 19/211 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           ++   +G  +            K D    +++P +                L +      
Sbjct: 17  SVCNELGFDYASYATTHP---VKGDVQGYANYPDEWKLHYGSQGYHHLDPTLYQAALSIA 73

Query: 111 PVFHTLP---------ENITPPAGMD-NRYCSLTFDVARIRIGLML----LFPKGRIILR 156
           PV  +                  G+                  L +       + + + R
Sbjct: 74  PVDWSRFNHDEKFNAVFRDAHDFGITDRGLTVPVRGPYGECGMLSVTKDCSDTEWKKLKR 133

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISR 214
             + ++ + A    +      V     +   L+ RE E L W++EGK+  +I  IL IS 
Sbjct: 134 HVMGDLQMAAVQAHDTVMQSGVLAKALYLPSLSRREREILQWVAEGKSQQDIGDILSISH 193

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TV  ++ S   K    T + AI  A+   +
Sbjct: 194 RTVEVHLRSGREKLGALTTAQAIGRAIGLGL 224


>gi|309799837|ref|ZP_07694044.1| transcriptional regulatory protein DegU [Streptococcus infantis
           SK1302]
 gi|308116553|gb|EFO54022.1| transcriptional regulatory protein DegU [Streptococcus infantis
           SK1302]
          Length = 227

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 73/215 (33%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +         +    D         +   D I+       +   
Sbjct: 4   VMVADDQALIRESLKIILSAHSDIEVVATVEDGNHVLSSIPQTHPDLILMDIRMPGMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A  E  ++Y  ++    +    F       +      + Y         +   + ++  
Sbjct: 64  LATKEVKEHYPDIKI---IILTTFDDDEFIYSALKYGASGYLLKGASTEELYEAIKVVHQ 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  + +  A    S  V      +L+  E   +  +  G+++ EIA  
Sbjct: 121 GGAMINPNIASKVFQIFSQMAKSNFSIAVDEDNVKDLSTTEWRIIQEVGYGESNKEIAAK 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  TV NY+++I+ K   + R+    ++V+  
Sbjct: 181 LFLSEGTVRNYLSTILAKLNLRDRTQLAIWSVQTG 215


>gi|300784675|ref|YP_003764966.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794189|gb|ADJ44564.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 62/223 (27%), Gaps = 14/223 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             +    D       L   +             G      VR        +D  +     
Sbjct: 3   PTVLLADDEPLVRTGLRALLEQQGVPVVGEAADGGEVLAAVRRTRPDVVLMDVRMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  +  D        P  L    F              + +         I   
Sbjct: 63  IEATRQVLAALADP-------PKILVVTTFDNDDYVHEALLAGASGFLLKRARKEEIAHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  + +  + +  A      ++          LT RE E L  I+ G ++
Sbjct: 116 VRTVAAGESLLFPEAIRRLVIGRAAGGKHTRAAK-------TLTRREAEVLRLIATGLSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV  ++  I  K     RS A+  A    +V
Sbjct: 169 QDIAAALVVSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVV 211


>gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 232

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L R        +D ++     
Sbjct: 7   RVLIADDHAVVRQGLRMILGLDNEIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     +           +         +     +   +R  
Sbjct: 67  VSATAEIRQD--------LPEVEVVALTSSLDDAMVMGAVRAGAIGFLLKNAEADDLRNA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +    +           +             +LT RE E LT ++ GK +
Sbjct: 119 VKAAAVGQIHVSPAAI-----------SRLMGQVREPSGPEQLTERETEVLTMLARGKAN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I + TV  Y++ I+ K    +R+ A  YAV++ +V
Sbjct: 168 KEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 210


>gi|148656116|ref|YP_001276321.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148568226|gb|ABQ90371.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 220

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ I+L  +       +  L  R      +           ++ AL             
Sbjct: 3   SEIRILLADDHRMFRQGLRELLERKAGFVIVGEASTGREVLAQVAAL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       + R +A S              +   ++            
Sbjct: 50  --QPDIVLLDIQMPEIDGVAVARQLAQSH--------PEVKIIMLTMYRQDQHLFEAIKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     D   +   +  ++     +                + F+   V    + +
Sbjct: 100 GARAYLLKDADADELIDVIERVYRGEAALDPTVT-------LKVFDEFRRLSVDQDAE-Q 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + LT ++ G  +  IA  L +S  TV N ++ I +K     R+ A   AV+  +
Sbjct: 152 LTERERDILTLLAAGYDNRTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRGL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|313801796|gb|EFS43030.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|314962915|gb|EFT07015.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
          Length = 218

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q +      V   K  +LT RE+E     
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQGS-----TVTGSKAEQLTAREIEVAKLG 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A A  + ++
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210


>gi|293415492|ref|ZP_06658135.1| two-component system [Escherichia coli B185]
 gi|291433140|gb|EFF06119.1| two-component system [Escherichia coli B185]
          Length = 225

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHEREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|256396913|ref|YP_003118477.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256363139|gb|ACU76636.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 227

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 66/222 (29%), Gaps = 12/222 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALT-----EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            R++  D  V        +      E  G +   L   +     K D ++      +L  
Sbjct: 3   PRVLIADDQVLVRTGFRMILTANGIEVAGEASDGLEAVEAAARLKPDVVLMDIRMPNLDG 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A          ++         F          A   + +         +   + L+ 
Sbjct: 63  LEAARRILAADPAIRILM---LTTFDLDKYVYDALAAGASGFLLKDVTPEHLVASVRLVD 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
               ++       +    A          K+          LT RE E L  +  G ++ 
Sbjct: 120 TGDALLAPSITRRLVEKFAAPPAEDAGGAKASPAVHRDLAALTPREREILALMGRGLSNT 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  L +S  TV  ++A I  K + + R+ A+  A    +V
Sbjct: 180 ELAARLVLSEATVKTHVAHIFTKLSLRDRAQAVVVAYETGLV 221


>gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 246

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 15/226 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVRC 89
            R++ +D        + A  E       +     + W+L Q+   D +++     + V  
Sbjct: 20  PRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPE-VDG 78

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               E+ +     +    +F        + I       + Y S  FD   +   +  L  
Sbjct: 79  YQFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138

Query: 150 KGRIILRDR---LWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWISE 199
           +     ++      +I  LA   A +        G +        +LT RE   L  +++
Sbjct: 139 RRAATRQEAEEGTPDITALAGQIARIENMLKGKTGINLSPSPIKIDLTPREQSVLDLVAQ 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 199 GLMNKEIASRLETSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 244


>gi|329948449|ref|ZP_08295174.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522072|gb|EGF49192.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 240

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 7/223 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  +     GA    L          +D  +     
Sbjct: 21  RVLIAEDQALLRTTLAALLEAEPGMSVVGLAEDGARAVALAAELRPDVILMDIQMPGLTG 80

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +           L     L   +F      +         +         +   
Sbjct: 81  IEATTRICA------DPALAATRVLILTMFEIDDYVLGALRAGACGFLLKDTAPQALVDA 134

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++    L  +     +      S          LT R+ E L  I+ G ++
Sbjct: 135 VRTVHEGQSLLSPQVLARLMARMPHTVAAGASDGSWAEDVEALTPRQREVLLLIARGLSN 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   LGI+R T  ++I +++ +   + R+  +  A    ++
Sbjct: 195 SEIEAELGITRATCRSHITALLARLDARDRAQLVIAAYETGLI 237


>gi|311741323|ref|ZP_07715147.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303493|gb|EFQ79572.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 217

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 72/237 (30%), Gaps = 23/237 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +VL  ++      +  +   +  ++ +                    G     L+
Sbjct: 1   MSEIRVVLVDDEPLLRHGLRMILEGAPGISVIGEAGN---------------GKEGVELI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  +      +    +      +   V+          F T    +    
Sbjct: 46  LAEEPDVVLMDIRMPVMDGIEATAQLHSLAGARDIPVV------MLTAFDTDEFILHALR 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T     +   +       + +    L  +  LAA      +      G   
Sbjct: 100 AGAVGFLLKTTAPEALVASVRAAAQGQQQLSPTVLENLVGLAATPPQPEQEMIQPSG-LA 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EL+ RE E    +++G ++ EIA  L IS  TV  ++  I+ K     R   IA AV
Sbjct: 159 ELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAV 214


>gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 232

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 14/226 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
           A ++ +D   S    + A  EY G     +        + L      ++ SD     V  
Sbjct: 5   ATILLVDDEPSVRESVQAYLEYSGDLTVKVASNATDAWRILEKITPDVIISDIMMPEVDG 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               EK +     Q    +F        + I       + Y    FD   +   +  L  
Sbjct: 65  YQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGCDAYLPKPFDPEELEAIVKNLLE 124

Query: 150 KGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFE--------LTGREVECLTWISE 199
           + +   +      ++  +A     + +                   LT RE   L  ++E
Sbjct: 125 RRKTNEKTATDSAKLEEIAQEIRELKQQLGQQQNTLTTTPSPIKIDLTPREQSVLDLVAE 184

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 185 GLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230


>gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 321

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVSSDWP 83
             + L    +      S       ++  +G   F + R          +     + + +P
Sbjct: 85  RWAPLATAFLNTVDLSSLLKLFGDVSASLGFPRFAISRVSRRHAGNGRAMSVETLCARYP 144

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----------ITPPAGMDNRYCSL 133
              V   A  +      V +       P                      AG+ +     
Sbjct: 145 DHWVAHYAQRDYGPVDPVHRMAFARATPYRWADIRGLNRIEQRVLGEARDAGLTSGVSIP 204

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREV 191
             +     + + L  P   I     +    L+ A               +   EL+ R+ 
Sbjct: 205 LREANGDILLVNLASPSPEIKTEVHMRLASLIGALFHQELHRLMKPHRPEPALELSPRQQ 264

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W++ GK+S  IA I+GIS +TV+ +IA  M+     +R+ A  +AV   ++
Sbjct: 265 ECLAWVARGKSSWAIAAIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 319


>gi|21219768|ref|NP_625547.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289773037|ref|ZP_06532415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9368908|emb|CAB99140.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289703236|gb|EFD70665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 76/240 (31%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +                    GA+   LVR 
Sbjct: 2   PVRVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAAD---------------GAAVVPLVRQ 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +       V   P  L    F             
Sbjct: 47  VRPDVVAMDVRMPLLDGIEATRALLRT-------VADPPKILVVTTFENDEYVYEALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    + ++   A Y                 L
Sbjct: 100 ADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLA--AEYGDGGGNRAARAELARARL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 158 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 217


>gi|302036525|ref|YP_003796847.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604589|emb|CBK40921.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 13/217 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY----VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           L R++  D           L +     VG         +   E K D ++       L  
Sbjct: 3   LPRVLLADDHTLVLEGFRRLLDDQCELVGTVGDGRALLEAIPELKPDIVILDISMPVLNG 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A       +  ++     F  +               + Y         +   +  + 
Sbjct: 63  IDAARVLKVKFPQVKVV---FITMHADPAYVRAAFEAGASAYLLKRCVGEELGQAIRAVR 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                +      ++        +M +  D       ELT R+ E L  ++EG T  +IA 
Sbjct: 120 SGNFYVTPLVTKDV------VESMLRGIDGGAPSGPELTTRQREVLQLLAEGHTVKDIAG 173

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L IS  TV  +   IM +    T    + YA+   +
Sbjct: 174 TLNISPRTVEFHKGQIMEQLNLHTTVELVKYALAQGL 210


>gi|322833700|ref|YP_004213727.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168901|gb|ADW74600.1| two component transcriptional regulator, LuxR family [Rahnella sp.
           Y9602]
          Length = 218

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C                          
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCRT---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++       +    A  +  ++   ++    +   ++   P          
Sbjct: 46  ----NDVDIVLMDMNMPGIGGLEATKKIVRFSPDIKI---IMLTIYTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + Y S       +   + L+    R I  D   ++ L            +      F+ L
Sbjct: 99  SGYLSKGAAPQEVVNAIRLVDSGQRYIASDIAQQMAL---------SQIEPQSETPFDSL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 245

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 30/233 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D ++    +       V
Sbjct: 12  NEDIKNYIQRRIKAYGDLRYSYLVMNK--KTPLHPAIISNYPLDWIKEYKKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +    +   P                   N+     + N Y  +  D       L +   
Sbjct: 70  ILTAKDKVAPFAWDDNSVINKKSTDSAVFNLAREYNIINGYTFVLHDNNHNMATLNISNG 129

Query: 150 KGRIILRDRLWEI-----GLLAAYQANMF-----------KSYDVHWGKDFELTGREVEC 193
               I  D   EI      +L     +             K       +    + RE E 
Sbjct: 130 NDDSIYFDESIEINKEKIQMLLILTHDKMLGLYQKNNNENKELGRSAAEREIFSPRENEI 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W S GKT  EIA+ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 190 LYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242


>gi|170758988|ref|YP_001788912.1| transcriptional regulatory protein DegU (protease production
           enhancerprotein) [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405977|gb|ACA54388.1| transcriptional regulatory protein DegU [Clostridium botulinum A3
           str. Loch Maree]
          Length = 219

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 78/241 (32%), Gaps = 26/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  + +     ++ + +  + +  +   +                     +L+   
Sbjct: 2   INVIVADDQKIVRDGITMILSLYEEINIIGEAENGKEL---------------IMLLEKS 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      +  + +            +    +    F+       P     
Sbjct: 47  LPDVILMDIRMPIMDGVEATKIVKEK--------YKNVKVIILTTFNEDEYIFKPIKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           + Y         I   +  ++    ++  +   ++           +S+       +EL 
Sbjct: 99  DGYLLKDAGSEYIIEAIKSVYNGAMLLDPEVTVKVVKAFNSITEKTQSFTNFNKIKYELD 158

Query: 187 --TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE E    +S+GK++ +I  IL ++  TV NY+  I+ K     R+    +  ++ 
Sbjct: 159 ALTPREREVAKLVSQGKSNKDICNILFLTEGTVKNYVTRILEKLELNNRTELALFINQDG 218

Query: 245 I 245
           +
Sbjct: 219 L 219


>gi|148272754|ref|YP_001222315.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830684|emb|CAN01624.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 228

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 12/229 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + V         +  +I     + +           G     L R +      +D 
Sbjct: 5   PIRVALVDDQALFRTGVRMLISSQPDLEFAGEA-----ANGQEAVELARAERPDVILMDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D ++  A   +       + P  L    F              + +     D
Sbjct: 60  RMPVM---DGIQATAEVLRAADARGERPPRVLVLTTFDLDESAARAIRAGASGFVLKDAD 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +     +I      ++        +      V       LT RE E    
Sbjct: 117 PEFLLAAIRTVHAGNSVIAASATRQL----LEHFDPGSRPRVAPPAFMSLTSREREIFVL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + G ++ EIA    +S  TV  +++ I+ K + + R   + +A  + +
Sbjct: 173 AARGLSNAEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221


>gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
 gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946]
          Length = 206

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 24/228 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V       D L   +  +  +       +  E         +         +D  +
Sbjct: 3   RVFIVEDHAFTRDGLRVAVGREPDLQVVGEARSAEEG-----IEQLAHTSADVVLMDIGL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +                 +   V     E +       + YC  + D A
Sbjct: 58  PGMDGIEATKLVKER---------FGVRVVVLTVHQLEAEVLAAMTAGADAYCLKSTDPA 108

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            + + +         +                 +     V  G   +L+ RE+E L  I+
Sbjct: 109 SLLLAIRAAAIGSTYLDPQI----------AHIVLGQLSVLSGGQAQLSPRELEVLRLIA 158

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG ++ EIA  LGIS +TV  +I  ++ K +   R+ A   AVR  ++
Sbjct: 159 EGLSNKEIAQRLGISLSTVKTHIEELLAKLSASDRTQAAIKAVRQGLL 206


>gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 68/238 (28%), Gaps = 22/238 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L  +I +   +  +          G     +V   +     +D  
Sbjct: 10  IRVVLVDDQTMIRQGLGYVIKMQKDMEVSGEASN-----GEEAVKIVGEIIPDVVLMDVQ 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    D  R +                 L    F T    +         Y     D 
Sbjct: 65  MPNMSGIDATREITRLH--------PSVKVLILTTFDTYDYIVDGIRAGAVGYMLKDSDS 116

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---------TG 188
             +   +        +       +               D     D  L         T 
Sbjct: 117 QDMLDLIRRAHQGEALFYTATAAKALAEVLQFQQKNYEPDSDADCDSTLPPLVMFDQLTD 176

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  +S GK +D+IA  L IS  TV  +I  I++K   + R+ A+A A+R  IV
Sbjct: 177 RERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQAVAKAIRYKIV 234


>gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121]
 gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121]
          Length = 219

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +S    M  + E  G A     +         LD  +     
Sbjct: 10  RVFLVDDHAVFRSGVRAELSREADMDVVGEAGGVAEAIAGINSTKPHVVLLDVHMPDGGG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             ++R +                 L   V     + I    G    Y + T   + +  G
Sbjct: 70  VAVLRGIDSGPVC-----------LALSVSDAAEDVIAVIRGGARGYVTKTISGSELAEG 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +        +  L ++             +   LT RE+E L  ++ G T 
Sbjct: 119 VRRVAGGDAVFGPRLAGFV--LDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTY 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 177 REIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRRQI 218


>gi|15805459|ref|NP_294155.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458112|gb|AAF10009.1|AE001902_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 214

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 64/222 (28%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +  +  M  + E   G                +D  +     
Sbjct: 3   RVLLADDHALFRQGLRSLLE-SEGMRVIGEAANGREAVRYAADTQPDVILMDIQMPELDG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +             +   +   ++                Y     D   +   
Sbjct: 62  VKATQSILEIN--------PQARVIMITMYRQDRYVFEAVKAGARGYILKDADAGTLIDA 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  D    +           K  ++   K  +L  RE   L  +++G ++
Sbjct: 114 ITRVAAGEALLDADMAQNVLDDF-----RDKREELPSEKHADLNERETMILKLLAQGFSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA+ L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 169 QDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC
           27126]
          Length = 214

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L  +       +  L    D +  +   +                          
Sbjct: 2   KTRLILVEDQMLVREGIKSLLGLDDSVEVVGEYENGQQLIDS---------------ENG 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D +  +          VL          F             
Sbjct: 47  THCDVILMDIRMPKLSGIDTLLALRDRGIKT--PVL------MLTTFDDHELVNGAMRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y      +  +   +  +     +I      ++          F+S++        L
Sbjct: 99  AKGYLLKDVSLETLVDTITQIKNGKTLIQPAVTEKVLQGLKGLNVEFESFENPEP----L 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +EVE L  I+ G ++ EIA  +  S  T+ N ++SIM K   + R+ A+  A+   ++
Sbjct: 155 TEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKLGVRDRTRAVLKALEQGVI 214


>gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae
           BGR1]
 gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1]
          Length = 273

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 74/235 (31%), Gaps = 16/235 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPL--DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           D+ R S   H+      LA       D   S    +  +   +G ++             
Sbjct: 26  DKARVSAQLHVIGGGYRLAAAARERGDTPESLLDAVLPIARRLGFAYLEYFFNTSLPVSA 85

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAG 125
              +V  ++P    R     E  +   ++ R      P+               +   AG
Sbjct: 86  PRKLVIGNFPPAWSRREGADEVSEANPIIARCKSSMMPMAWDEASFASHPDFRAMLARAG 145

Query: 126 MDNRYCSLTFDVARIRIGL---MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           +   +  L  D A     L            +  +   ++  LA    +           
Sbjct: 146 IGGGWSQLVRDGAGNWGVLTVARTACRYAGAMEVEAEAQLLWLAHIVHSRLCQMLRPPMT 205

Query: 183 ---DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 LT  E   L W  +GKTS E+A IL +S  TVN ++ +I+ K  T  ++
Sbjct: 206 GANRVLLTEMEKTILRWTVDGKTSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260


>gi|126348513|emb|CAJ90237.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 220

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 75/240 (31%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +                    GA+   LVR 
Sbjct: 2   PVRVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAAD---------------GAAVIPLVRQ 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +       V   P  L    F             
Sbjct: 47  VRPDVVAMDVRMPLLDGIEATRALLRT-------VTDPPKILVVTTFENDEYVYEALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    +  +   A Y                 L
Sbjct: 100 ADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRRLA--ARYGDGGGDRAARAESTRARL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 158 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 217


>gi|91790134|ref|YP_551086.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91699359|gb|ABE46188.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 214

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + L R+I     +          E +       VR   F    LD  
Sbjct: 2   IRIVIVDDHAIVREGLKRIISSADDMEVAGEAANGAEAMQR-----VRELAFDVLMLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L++ +   +         +   L   +   L   +       + Y +     
Sbjct: 57  MPGRSGMELIKLVRAEK--------PKLRILVLSMHQELQYAVRAIKSGASGYLTKESAP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A++   +  +   G  I  +   ++ L A                   L+ RE E    +
Sbjct: 109 AQLEQAIRKIAAGGAFISAEVAEQLALGAM--------PGSEVAAHGSLSDREFEVFRLL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G +  EIA  L +S  TV+ + A++M K     +S  I YA+R+ +
Sbjct: 161 VAGVSVTEIAGRLNLSVKTVSTHKANLMHKMGLHNQSELIRYAMRHGL 208


>gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 217

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 62/230 (26%), Gaps = 18/230 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D      V   P   D +AR    D           +                    + D
Sbjct: 4   DRTSVMVVDDHPIWRDAVAR-DLADDGFDVVATADGVASA----------KRRAAVVRPD 52

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V      D     A +E        +              + +         Y   + 
Sbjct: 53  VVVMDMRLGDGDGAQATTEVLAVSPSSRIL---VLSASDERDDVLEAVKAGATGYLVKSA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        +        +  L   +    +           LT RE E L 
Sbjct: 110 SKQELGDAVRATAQGRAVFTP----GLAGLVLGEFRRIEQSSPAGADGPTLTERETEILR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 166 YVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQVGNRVELARYAIEHGL 215


>gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 211

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 14/209 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD----SIVSSDWPFDLVRCMA 91
           ++ +D   +    +  + E        L        + L+     +V  D    ++  + 
Sbjct: 6   VLIVDDNPAVLDGLKIILELENFEVVSLCTNAKEAIEFLEKKHADVVLMDIRMPVMDGI- 64

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                           +    F          +   + Y   + D   I   ++ +    
Sbjct: 65  -EGTFNIKTKFPNVKVIILTTFCEEDYIKKSLSFGADGYILKSSDAKHIVNSILSVLDGK 123

Query: 152 RIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            ++ ++       +A Y +++  ++      K   LT RE+E    IS+G ++ EIA +L
Sbjct: 124 VVMDKE-------IALYISDVLKRTSKQLLEKTQNLTERELEIAKLISQGYSNKEIARML 176

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IS  TV NYI SI++K   K R+    Y
Sbjct: 177 FISEGTVRNYITSILQKLNLKNRTQIAVY 205


>gi|329940979|ref|ZP_08290259.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300273|gb|EGG44171.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 255

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 62/234 (26%), Gaps = 19/234 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D +AR    +            T   G       R        LD 
Sbjct: 33  PIRVMVVDDHPMWRDAVAR-DLAESGFDVV-----ATAGDGEQAVRRARAVAPDVLVLDL 86

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            + +     + + +  ++             L         + +         Y   +  
Sbjct: 87  NLPAKPGVQVCKELVGAQPAP--------RVLVLSASGEHADVLEAVKSGATGYLVKSAS 138

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-----VHWGKDFELTGREV 191
              +   +        +        +       A                +   LT RE 
Sbjct: 139 TEELVDAVRRTAAGDPVFTPGLAGLVLGEYRRLAAEPAPAPESGEAGETARAPRLTERET 198

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 199 EVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 252


>gi|256787147|ref|ZP_05525578.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289771044|ref|ZP_06530422.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289701243|gb|EFD68672.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  + T    +  +                    G     L R  
Sbjct: 2   IRVLLADDETIIRAGVRSILTTEPGIEVVAEASD---------------GREAVELARKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           M  +  D           +    F              
Sbjct: 47  RPDVALLDIRMPEMDGLTAAGEMRTTNPD--------TAVVVLTTFGEDRYIERALDQGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     D   +  G+  +   G  +       +        +          +   LT
Sbjct: 99  AGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSG--ERTTLLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ EIA  L +   T+  Y+++I  +   + R  A   A    +V
Sbjct: 157 KREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAGLV 215


>gi|182436531|ref|YP_001824250.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777153|ref|ZP_08236418.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465047|dbj|BAG19567.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326657486|gb|EGE42332.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 231

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     R++        +  V        + +        ++  
Sbjct: 14  RVRVVLVDDHRMFRTGVQAEIGRTE--------ETGVEVVGEAADVDQA-----VTVITA 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A         V      L   V     + I    G 
Sbjct: 61  TRPEVVLLDVHLPGGGGVEVLRRCAPLMGAAENPV----RFLALSVSDAAEDVIGVIRGG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 117 ARGYVTKTITGTDLVNSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 229

Query: 245 IV 246
           +V
Sbjct: 230 LV 231


>gi|256380511|ref|YP_003104171.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924814|gb|ACU40325.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 216

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  +     + V          A +  +   V       ++ E         +   
Sbjct: 3   VRVFLVDDHALFRAGVR---------AELDSITDDVEVVGEAGSVGEA-----VAGIGRH 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++R +           L     L   V     + I       
Sbjct: 49  RPDVVLLDVHMPDGGGAEVLRQVRK--------ALPEVVFLALSVSDAAEDVIAVIRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + T     +   ++ +     +         G +    A+   +  +   +   LT
Sbjct: 101 RGYVTKTISSQELVRAVVRVAEGDAVFSP---RLAGFVLDAFADRPGAAPISDPELDLLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A    +V
Sbjct: 158 PRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 216


>gi|239831204|ref|ZP_04679533.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823471|gb|EEQ95039.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 213

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 68/234 (29%), Gaps = 26/234 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E + R   V + P   D L  ++     +            +      L        
Sbjct: 1   MTNECKIRVLLVDNHPLVLDGLRAVLETYDDIDVAGAASNARAAL-----ELALAVNPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      D +              ++           +     T      + Y 
Sbjct: 56  VLMDINMPLLNGIDAIELFKKQF-----PGIRILMLSM---HDSREYISTSIMRGASGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A I   +  +   G          +              D    K   L+ RE 
Sbjct: 108 LKDVSTAEIVAAIHAVASGGTYFSSGVSEAL-------------LDSGERKSEGLSVREN 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG ++ EIA+ LGIS  TV  +  +I +K    + +G   YA+ N +
Sbjct: 155 DVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTRYAIENRL 208


>gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 225

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 14/228 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
                 +L  ++   + + +       L   +           LF +      V   +  
Sbjct: 2   DKLRLFELSNQLRCAESSDAIHAWFGELQNEIDFE---FSILGLFGDDYAPDPVCYGFSP 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D        +  +   ++    +    +   +  +  P  G       L       +  +
Sbjct: 59  DQFANCFSKKTAESDPLIAALQQSNHGIMALMDSHTHPDYGKR----LLLAGYHGDKKAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQA-------NMFKSYDVHWGKDFELTGREVECLTWI 197
            L     R    + +  + LL  +         +     +     + +LT RE E L W+
Sbjct: 115 YLTSFGDRQPSSEEIDALYLLTPHLYMASSYVCDRNIRVETLPAPESQLTTRECELLPWL 174

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             GK++ EI+ +L IS  TV  ++ +I RK     R+ A++ A+    
Sbjct: 175 KLGKSNWEISRLLNISERTVKYHLQNIYRKLDVHNRTHAVSKAIELGW 222


>gi|257068341|ref|YP_003154596.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256559159|gb|ACU85006.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 225

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V            ++     +         T   GA    +V         +D 
Sbjct: 7   AVRVLIVDDQSMIRGGFEALLGAQEGIEVVG-----TAADGAGIVDVVARTRPDVVLMDI 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +              P  +    F              + +      
Sbjct: 62  RMPHVGGLEATREVLEMPG-------AVPRIIMLTTFDADEYVFAALRAGASGFLLKDST 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++     ++         L+A + A   +S          LT RE+E L  
Sbjct: 115 PEELVHAVRVVADGQSLLAPPVTR--ALIADFVARPERSAGADAS-LAVLTERELEVLRG 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G  + EIA  L ++  TV  +++ I+ K   + R+  +  A  + +V
Sbjct: 172 VARGLANREIAAELVMAEQTVKTHVSRILGKLMLRDRTQLVVAAYESGLV 221


>gi|238895472|ref|YP_002920207.1| response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|238547789|dbj|BAH64140.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 218

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 69/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                        A     G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRIL---------------EDIKGIKVAGEACCGEDAVKWCRAN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S        +     +   V    P          
Sbjct: 47  SADVVLMDMNMPGIGGLEATRKIARS--------VAGTKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L            D        L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRCVASGQRYIASDIAQQMALSQI-------EPDKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
 gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                V   P     + +++ LD                G+   +           LD  
Sbjct: 5   HTIMIVDDHPLMRRGIRQLLELDSNFDVVTEAN-----CGSDAIIEAARYQPDVILLDLN 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D ++ +     D           +   V     +         + Y     + 
Sbjct: 60  MKGMSGLDTLKALRNEGID--------ARIIILTVSDARNDVYAMIDAGADGYLLKDSEP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +       ++   +        A Y ++  +          ELT RE++ L  +
Sbjct: 112 EILLENIRQAALGEKVFSDEV-------ALYLSSRHEQV----NPFGELTERELDVLQEV 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 161 ARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMFLEN 206


>gi|269956425|ref|YP_003326214.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305106|gb|ACZ30656.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 241

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 63/240 (26%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V++++  + +   +    L      +  +           ++ AL              
Sbjct: 20  EVSVLVVDDQDLVRAG-FRLILERAGIEVLGEAADGAQAVEQVAAL-------------- 64

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +                 +    F             
Sbjct: 65  -RPDVVLMDVRMPHLDGIEATRRILARAGT-------AVRVIVLTTFDLDEYVYGAIRAG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +  +     ++    L     +         +          L
Sbjct: 117 ASGYLLKDVSPRGLVTAVRAVADGEAMLSPAVLTR---MLDQYVARPPAGVALPPAIAAL 173

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E    ++ G ++ +IA  L +S  TV  Y++ ++ K   + R      A    +V
Sbjct: 174 TDREREVARNVARGLSNAQIAARLFLSEATVKTYVSRLLTKLGLRDRVQIAVLAYETGLV 233


>gi|284030284|ref|YP_003380215.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809577|gb|ADB31416.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 11/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ L    D     I           +  + E   G     + R        +D  +   
Sbjct: 1   MTRLLLVDDQPMLRIGFRMVFETQPDIEVVGEAGDGERAVAMTRALSPDVVLMDVRMPVV 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +  +              L    F              + +         + 
Sbjct: 61  DGIQATRRIVETGS--------AARVLVLTTFDLDEYVFAALRAGASGFLLKDVPPEDLL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     ++       +  L A+ A +  +      +  +LT RE E L  +++G+
Sbjct: 113 GGIRAVAAGDAVVAPRVTRRL--LDAFAARLPGAAPDPDPRIGQLTDREREVLVEVAKGR 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV  ++  I+ K   + R   +  A    +V
Sbjct: 171 SNAEIAGELMVSAATVKAHVGRILTKLELRDRVQIVVLAYETGVV 215


>gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5]
 gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI
 gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis]
 gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5]
          Length = 213

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + L  +I  +   +            G     L          +D  + 
Sbjct: 4   VLIVDDHLVVREGLKLLIETNDQYTIIGEAEN-----GKVAVRLADELEPDIILMDLYMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + ++ +                 +    ++     I         Y         
Sbjct: 59  EMSGLEAIKQIKEKHDTPI---------IILTTYNEDHLMIEGIELGAKGYLLKDTSSET 109

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        ++  D L  +  +        K        + +LT +EV  L  I++
Sbjct: 110 LFHTMDAAIRGNVLLQPDILKRLQEIQ---FERMKKQRN----ETQLTEKEVIVLKAIAK 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S  IA  LG+S  TV + + SI  K    +R+ A+  A++  I+
Sbjct: 163 GLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGIL 209


>gi|238061732|ref|ZP_04606441.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883543|gb|EEP72371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 221

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 55/219 (25%), Gaps = 11/219 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L R         D  +     
Sbjct: 5   RVVIADDQAIIRTGLRIMLDVQPDIEVVGEASDGREAVRLARDLRPDVCLFDIRMPVLDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          +          F                +         +   
Sbjct: 65  LEATRQLA--GPGVADPFVVVVITT----FDLDEHVYGALRAGARGFLLKDAGPELLVQA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +                       +T RE + L  ++ G T+
Sbjct: 119 VRSAADGQALIAPSVTVRL----LQAFADVPVGRPMTQPVVPVTAREEDVLIAVARGLTN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EIA  L IS +TV  ++AS+M K   + R     +A  
Sbjct: 175 VEIADALHISLSTVKTHLASLMGKLGVRNRVEIAMWAYE 213


>gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
 gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator
           [Burkholderia glumae BGR1]
          Length = 241

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 17/184 (9%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH------------TLPENITPPAGM 126
            S +P  L +        +   V+    +   P               +  + +    G+
Sbjct: 52  LSSYPIRLQQEYRRRALHRVDPVVLHAIQSVAPFSWAEAFRQQRVPDPSEFDALRREFGL 111

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE----IGLLAAYQANMF-KSYDVHWG 181
            + Y     D  +    L      GR   R  +      + L      +           
Sbjct: 112 HDGYVFTVHDPYQYVGMLSFFNRGGRPEFRAEIERVKGAMQLALVLFHSRINAKPPDSRH 171

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE   L W + GK+  EIA I GI   TV  ++A++++K    T   A+  A 
Sbjct: 172 RVESLTLRERTVLKWAAMGKSYSEIADICGIRERTVKYHMANVVQKLDVSTAKQAVIVAS 231

Query: 242 RNNI 245
           R  +
Sbjct: 232 RLGL 235


>gi|111023025|ref|YP_705997.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822555|gb|ABG97839.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 16/237 (6%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           V ++    R + V  L    D       L   +     +  + E       L V  D+  
Sbjct: 7   VRDQAGSARPTSVVKLVLVDDHAILRQGLRSVLEREPDLEVVGEASSMQEALAVVGDVAP 66

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-FCPVFHTLPENITPPAGMDNR 129
           +     +V  D                  +       L     F      +         
Sbjct: 67  D-----VVLMDLKLSAASDYEGLALCAQLSAADGTMGLLVLTTFLDEQLVVRAIHAGARG 121

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     D   +   +  +              +           +S +        LT R
Sbjct: 122 YVVKDVDTTELVRAIRAVSRGESAFDSRSASAV----------IRSLNGQTTPRDGLTER 171

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++G ++ +I   L IS  TV  ++++IMRK     R+ A+  A +  ++
Sbjct: 172 ELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228


>gi|161724871|emb|CAO85746.1| rR protein [Pseudomonas putida]
          Length = 240

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 20/214 (9%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            +           +     + ++ I+ S++P   V+    ++      +++       P 
Sbjct: 27  LQLCDVKDLKYAYYAATHNRNVEPIIISNYPPSWVKSYKDNKSYLIDPIIKHGLREITPF 86

Query: 113 FHTLPENITPPAG-----------MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW- 160
                   + P G           + +       D +     L +     ++    R+  
Sbjct: 87  SWHEALANSGPEGVDFFRRATRYRICSGTTFTLRDASGTFCALSVCDAGSQVDFDRRMAK 146

Query: 161 ---EIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGI 212
              ++ +L     +   +            D  L+ RE+  L  +  GKT  EIA   GI
Sbjct: 147 QQSQLQMLLIKFHSWLMTSRKTDQLFSSAADGPLSTRELGVLQLVMRGKTYREIATDCGI 206

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++++I  K        A+  A R  I+
Sbjct: 207 SERTVKFHMSNISGKLQVGNAKQAVYEAKRQGII 240


>gi|119471719|ref|ZP_01614079.1| response regulator [Alteromonadales bacterium TW-7]
 gi|119445342|gb|EAW26630.1| response regulator [Alteromonadales bacterium TW-7]
          Length = 216

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +         +                    G +     R  
Sbjct: 2   INVLLVDDHELVRTGIRRILDDVRGFKVVGEAKD---------------GEAAVQFCRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +      +Y   ++    +   V    P          
Sbjct: 47  TPNIVLMDMNMPGMGGLEATKKI-----CRYCPDVKI---IVLTVNCEDPFPSKVMQIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +       +   +  +    R I  +       +A   A    +          L+
Sbjct: 99  HGFLTKGAGSDEMVRAIRSVHAGQRYIAPE-------IAQQIALAQVTGRTDENPFQSLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+ + +IA  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 152 ERELQIMLMITKGEKAQDIAERLNLSSKTVNSYRYRMFEKLNVGGDVELTHLAIRHKMI 210


>gi|91787064|ref|YP_548016.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696289|gb|ABE43118.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 213

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + L R+I     +          E +       VR   F    LD  
Sbjct: 2   IRIVIVDDHAIVREGLKRIISSADDMEVAGEAANGAEAMQR-----VRELAFDVLMLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L++ +   +         +   L   +   L   +       + Y +     
Sbjct: 57  MPGRSGMELIKLVRAEK--------PKLRILVLSMHQELQYAVRAIKSGASGYLTKESAP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A++   +  +   G  I  +   ++ L A               +   L+ RE E    +
Sbjct: 109 AQLEEAIRKIAAGGAFISAEVAEQLALGAM--------PGSEAPRHDCLSNREFEVFRLV 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +G T  +IA  L +S  TV+ +  ++M K     +S  I YA+++ +
Sbjct: 161 VDGMTLTDIAAQLHLSVKTVSTHKVNLMHKMGLHNQSELIRYALKHGL 208


>gi|323130577|gb|ADX18007.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
          Length = 238

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 26  EVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGD---------------GASAIDL 70

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 71  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 122

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++              Y     + +       
Sbjct: 123 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVN-------EYLRERER-FGAQEDPF 174

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 175 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 230


>gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 212

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +  + +  +           + + L               
Sbjct: 6   IKVLFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKEAIEKAHEL--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L     +    F    E         
Sbjct: 51  KPDLILMDLLMDDMDGVEATTEIKKD--------LPHIKVVMLTSFIEDKEVYRALDAGV 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    +   + L ++        N  K     +     LT
Sbjct: 103 DSYILKTTSASDIAEAVRKTYQGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 153 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 211


>gi|213850302|ref|ZP_03381200.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 217

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 31/235 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 3   EVTPFQVLIVDDHPLMRRGIRQLLELDPAFYVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++              Y     + +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVN-------EYLRERER-FGAQEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A  
Sbjct: 152 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATI 206


>gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 240

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 31/249 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       +     +   +  +   +                GA    L 
Sbjct: 1   MELIRVLIIDDHPLFRQGICWSLGQEKDIEVIGQAEN---------------GAEAIKLT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      ++ R +             R   +   +     +      
Sbjct: 46  ETLSPNVVLLDINLPGLNGLEVARVLKRRA--------PRMGIIVLSIHDDDEQLFNAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
                Y S   D  ++   +  +     +I    + +   +A    N F+          
Sbjct: 98  AGAAAYASKEIDPTQLVGMIRDVAHGRYVINESVMSKPH-VATRVLNQFRELSNVANNSE 156

Query: 184 ------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+
Sbjct: 157 DTSSMFAPLTSREIEILDCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAV 216

Query: 238 AYAVRNNIV 246
            +A++   +
Sbjct: 217 IHAIQQGWI 225


>gi|239942450|ref|ZP_04694387.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988915|ref|ZP_04709579.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445905|ref|ZP_06585295.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348852|gb|EFE75756.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 221

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 24/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +   +      L    D +  +                    G     LV   
Sbjct: 2   TTVLLADDQPMQRFGFRMLLESQDDMTVVGEAAN---------------GTEAVHLVARH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S          R   L    F              
Sbjct: 47  HPDVVLMDIRMPGLDGIEATRRIIASG--------ARTRILIVTTFDLDEYAYDGLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + +         +  G+  +     ++       +     +   +              L
Sbjct: 99  SGFLVKDALPEELLAGIRAVAAGDAVVAPTLTRRLLDAYVHHLPVVPGARATSDPRITAL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT I +G ++ EIA  L ++ +TV  ++  I+ KT  + R  A+  A    +V
Sbjct: 159 TEREREILTVIGQGWSNTEIAARLHLAESTVKTHVTRILAKTGARDRVQAVILAYDTRLV 218


>gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus]
 gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus
           cytotoxicus NVH 391-98]
          Length = 200

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 70/239 (29%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L    D +  +   +                G   F L+   
Sbjct: 2   IRIILAEDQRMLRGALGALLDLEDDMEVVGQAEN---------------GEEAFTLIEKL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  QPDVSIMDIEMPIQSGLDVAETLQKKKSS--------CKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I  + ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEELAEAIRNVMKGKREISPELMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT+++IA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREREVLLLAKEGKTTNDIAKALYLSPGTVRNYISEVLTKLNAKNRIEAITIAEEKGWI 200


>gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 215

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  + E   G      +         LD  +     
Sbjct: 3   RVALVEDQTLVRQGLRSMLDLAGDMQVIGEAEDGVQATERLPELRPDVVLLDLRMPHLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +++ ++                L    F      +         Y      + ++   
Sbjct: 63  LGVLQRLSAHGTLP--------PTLVLTTFDDDELILECVQAGARGYLLKDVALPQLLQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   GR +       +  L   +A    +          LT RE + L  ++ G ++
Sbjct: 115 IRTVAGGGRWLQPAVTQRV--LRGLEAFRPAAEPFTPCDAVTLTDRECDVLRLLAGGYSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L  +  TV +Y+++++ K   + R+ A+  A+   ++
Sbjct: 173 REIAGALRTTEGTVKSYVSNVLSKLGVRDRTRAVLKALELGVL 215


>gi|312867898|ref|ZP_07728103.1| putative oxygen regulatory protein NreC [Streptococcus
           parasanguinis F0405]
 gi|311096653|gb|EFQ54892.1| putative oxygen regulatory protein NreC [Streptococcus
           parasanguinis F0405]
          Length = 210

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +    +    + +++                   G     L   +
Sbjct: 1   MKVLLVDDHEMVRLGLKSFLSMQTDIEQVLEAKN---------------GQEGVELALKE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      D    +                 +    +    +         
Sbjct: 46  RPDVIIMDIVMPELNGIDATLAILKEW--------PEAKIVILTSYLDNEKIYPVLDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +  +      I  +            +   +S   H     +LT
Sbjct: 98  KGYILKTSSATEILQAVRKVAKGEFAIETE-----------VSQKVESRKNHAELHDDLT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +++G  +  IA  L IS  TV  ++++I+ K     R+ A+ YA R+++V
Sbjct: 147 ARERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFRHHLV 205


>gi|322436606|ref|YP_004218818.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164333|gb|ADW70038.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 240

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       V ++         +   +                G          
Sbjct: 23  IRIVVADDHPVVRFGVKNMLMNEPGFEVVGEAED---------------GDVAIQQALEL 67

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +R +             R   +      +  + I       
Sbjct: 68  EPDILLLDLNMPRLPGLEAMRAIMTKS--------PRVKIILLTATISTQQIIEALQIGA 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                       +   L  +      I  +R+  +                   K + LT
Sbjct: 120 RGIVLKDAVSGDLSEALRAVLSGDYWIGGERVANLLKALHELMQKAAQVPER--KTYGLT 177

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I EG ++ ++A    IS  TV  ++++I  KT   TR     +A+ + +V
Sbjct: 178 PRELEVVQCIVEGCSNKDVAKQFTISEETVKRHLSNIFDKTGVSTRLELALFAIAHKLV 236


>gi|223940647|ref|ZP_03632489.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890693|gb|EEF57212.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 243

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 16/214 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-GASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRC 89
           +  ++           L +     +   +         +    + D I+   +   +   
Sbjct: 29  VALVEDQPKVRESWCRLIDSFPDFTCVCVCGSGEEALRVIPGVRPDVILMDIFLPRMSGI 88

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                        Q                        + Y       A +R  L+ +  
Sbjct: 89  ECTVRLKAQCPETQIV---ILTAMDDQELVFMALEAGADGYLLKRTKPADLRCALLDVLG 145

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  +          +A      F+    +  +   L+ RE + L  +S+G ++  IA  
Sbjct: 146 GGAPMTS-------QIARRVIESFRRKAKNPNEYAHLSMREEQILRLLSQGYSNKLIADK 198

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S +TV +++  +  K    +R+ A+   + +
Sbjct: 199 LELSIDTVCSHLKRVFEKLHVSSRTEAVVRYMES 232


>gi|91775298|ref|YP_545054.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91775442|ref|YP_545198.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91709285|gb|ABE49213.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
 gi|91709429|gb|ABE49357.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
 gi|167042465|gb|ABZ07191.1| putative Response regulator receiver domain protein [uncultured
           marine microorganism HF4000_ANIW133B20]
 gi|167042877|gb|ABZ07593.1| putative Response regulator receiver domain protein [uncultured
           marine microorganism HF4000_ANIW137K11]
          Length = 210

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 70/225 (31%), Gaps = 17/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D       L   +     +    E   G     LVR + +    +D  +   
Sbjct: 1   MKKILLVDDHNIVRQGLRNLIELESDLEVTGEAASGLEAIKLVRSNQYDAIVMDIAMPDK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +          V      L    +      +         Y S   D   I 
Sbjct: 61  NGVDTLHDLRH--------VAPELPVLILSGYGEEQYALNLMRSGCKGYLSKDADSEEII 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R I  +       LA    N   +       +  L+ RE +    ++ G 
Sbjct: 113 KAIRTVANGKRYISAE-------LAELMTNELSNPSEKLLHET-LSDREFQVFFKLASGL 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI   L IS  TV+ Y   IM K + KT +    YA++N ++
Sbjct: 165 SATEIGEELCISVKTVSTYRTRIMEKMSLKTNADLTYYAIKNQLI 209


>gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 216

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 65/228 (28%), Gaps = 19/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++  +  +     +       G +   +          +D +
Sbjct: 2   IRVMVADDHQIVRKGLVMLLEAEKNIDIVAEV-----SDGRAAVDIAEELRPHVAVMDIV 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +          V+             +             +       
Sbjct: 57  MPGMGGIEATRRLRKLGV----AVVALSMHSDRHFVVEMF------RAGARAFLLKDCAT 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +       +G+  +    +    D       ELT RE E L  +
Sbjct: 107 DELVGAIRAVVEGEAYLGPSIERGLGMDLSSLDYLIAEEDQR----MELTPREWEILQLV 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG+++ EIA  L +S  TV N+  S+M K      +    YA+R  +
Sbjct: 163 AEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIRCGL 210


>gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
 gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 76/215 (35%), Gaps = 13/215 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            T  +    + +    + L         +  + + S++P + +      +  +   VL+ 
Sbjct: 26  ITRVIEQQLKELELDFYSLFIRHPVPFTRPKTFLYSNYPQNWLEHYWREDFYQLDPVLKI 85

Query: 105 PTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RI 153
            +           +        +     G+ +          R    L +         +
Sbjct: 86  CSVPGKVWLWDDEDLSSGQRVFDDARIHGIYHGISCSVMASNRSVGILSMSTANALKNIV 145

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           +  +   +I  ++          +         +L+ RE+E L W +EGKTS EI++IL 
Sbjct: 146 LTPEIELKIQYISELTMAALIDINDISMATTKLDLSERELEVLKWTAEGKTSAEISLILS 205

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS+NTVN +   + ++     ++   +YA    ++
Sbjct: 206 ISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 214

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 31/241 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + +  +      +  +            +                 +
Sbjct: 2   IKIILAEDHNIVRNGIKSILDNEADMEVVFEAKNGNEVLSWL--------------AEGN 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L++ M  +                  +       I       
Sbjct: 48  SATLILTDMNMPGLNGLGLIKEMKANMPTVI-----------LSMLDHENYVIEAITAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFE 185
           + Y   + +   +  GL  +   G+ I      E+      + + +   +         E
Sbjct: 97  HGYLLKSINKDELLFGLRHVADGGKYI----CMELTFKLLDKLSGYSPINEPHKTIIAIE 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ISEG T++EIA  L  SR TV  +  +++ KT  K     I +A++N +
Sbjct: 153 LSEREKEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQNGL 212

Query: 246 V 246
           +
Sbjct: 213 I 213


>gi|269103218|ref|ZP_06155915.1| nitrate/nitrite response regulator protein [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163116|gb|EEZ41612.1| nitrate/nitrite response regulator protein [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 208

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 34/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +    I++  +       ++ L +       +                    G     L 
Sbjct: 1   MSNWQIIIVDDHPLMRRGINQLLSFEPEFNVIGEASN---------------GVDAVALA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D +  M               T +   V  +  +     A
Sbjct: 46  LETNPDLILLDLNMKGMSGLDTLTAMRNEGIS--------STIVVLTVSDSRADIKALVA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L      G                Y ++      +      
Sbjct: 98  AGADGYLLKDTEPDELIALLHQALAGGEAYSSIVK-------EYLSDDLAQDSLLS---- 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K   K+R+ A    + +
Sbjct: 147 TLTDRELQILQEVAKGHRNKQIADTLFISESTVKVHMKSLLKKLQVKSRTAATVLYLES 205


>gi|186470747|ref|YP_001862065.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197056|gb|ACC75019.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 215

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 20/228 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
                 +         +A++I ++ +   T    +     G     +          +D 
Sbjct: 3   PHTVLLIDDHALFRKGVAQLIQMNPSFEVTGEATS-----GQDGIEMAVRLKPDVVLIDL 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + +  M  +  D           +   V     + +       + Y     D
Sbjct: 58  NMPRMNGIETLEGMRQAGVD--------ARFIMLTVSDNERDVVAALRAGAHGYLLKDMD 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + + L        ++       +     +  +  +          +LT RE+E   +
Sbjct: 110 PEDLCVSLQKALKGTAVLSESVTGSL----VHALSGGQRIPAAQN---DLTARELEVFDY 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  G  +  IA  L IS  TV  ++  ++RK    +R  A+ +   + 
Sbjct: 163 LVAGLCNKAIARKLDISVGTVKVHVKHVLRKLDLHSRLEAVLWQQEHG 210


>gi|297192611|ref|ZP_06910009.1| two-component system DNA-binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151436|gb|EFH31165.1| two-component system DNA-binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 28/243 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVR 65
           +V +VL  +     + V     +++                 +  + E         ++ 
Sbjct: 12  RVRVVLVDDHRMFRTGVQAEIGQTERT--------------GVEVVGEAADVDQAVTVIT 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   LD  +      +++R  A         V      L   V     + I    G
Sbjct: 58  ATRPEVVLLDVHLPGGGGVEVLRRCASLMAAPENPV----RFLALSVSDAAEDVIGVIRG 113

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
               Y + T   + +   +  +     +           LA +  + F S D     +  
Sbjct: 114 GARGYVTKTITGSDLVDSVFRVQDGDAVFSPR-------LAGFVLDAFASTDAPPVDEDL 166

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A   
Sbjct: 167 DRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATAR 226

Query: 244 NIV 246
            +V
Sbjct: 227 RLV 229


>gi|213966347|ref|ZP_03394528.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium amycolatum SK46]
 gi|213950996|gb|EEB62397.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium amycolatum SK46]
          Length = 217

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 33/240 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +D    S +     ++  +  +            +               
Sbjct: 1   MSDIKVLIVDDDPLVLSTLRTYFKKAPHITVVDEASDGHEALNIIAR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  + +    +L+  +   E             +    F T    +   +
Sbjct: 48  --GGVDVVLTDIHMPNMDGVELLERIKKVENPP--------KFIAITSFDTDETMLKILS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y   T     +   +  +F  G +I       +           K+        +
Sbjct: 98  LGGNGYILKTARPESVIGTIEDVFQGGTVISPISATRL----------IKTLPSRNISSY 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T  E E L  I  GK++ +IA  LG S  T+  +++S+  K    +R      A+   
Sbjct: 148 KITQAEREVLGLICRGKSNHDIAKELGKSPGTIKKHLSSMFNKFGATSRLDLALKAIDAG 207


>gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136]
          Length = 216

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 24/229 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
           R + +  +    D +  +  L+  ++    M  +     G+    L +        +D  
Sbjct: 9   RPASLIRVLIADDHVTVLEGLNVIINRNEDMQVVAAAADGSKAVALWQQHRPDVTLVDIR 68

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       ++  +   +             +      T  E           Y       
Sbjct: 69  MPGLDGVAVIEEIRRLDSS--------ARVVVLTTCDTDNEIYRAVKAGARAYLLKDGPR 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +    + ++                    +  LT RE E L  +
Sbjct: 121 EELVDTIRRVHRGETCLAPSLVEKLA---------------ASVSNEPLTRREQEVLELL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+++ EIA  L IS  TV  ++ S+  K    +R+ AIA A R  +V
Sbjct: 166 ARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASRKGLV 214


>gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 68/244 (27%), Gaps = 21/244 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASH 60
           +N   +   S   H     D   R++  D        +  + +             G   
Sbjct: 1   MNAGRDAGGSVAPHAGGNPDPDIRVVVADDQEIVRTGLRMILDAQPGIVVVGVAVDGRRA 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L R        +D  +           +A         V+          F       
Sbjct: 61  VELARRLRPDVCLIDIRMPVMDGIQATLALAGPGVADPLAVV------VITTFDLDEYVY 114

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +         +   +        +I  +    +  LA +  +         
Sbjct: 115 AALRAGARGFLLKDAGPDLLAQAVHAAACGDALIAPNVTARL--LATFAGSGPAPVPAQ- 171

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  ++ G+T+ EIA  L IS +TV  +IAS+M K   + R     +A
Sbjct: 172 -PVEALTDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGARNRVEIALWA 230

Query: 241 VRNN 244
            +  
Sbjct: 231 YQTG 234


>gi|94984423|ref|YP_603787.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554704|gb|ABF44618.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 214

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLV 87
           + R++ +D    +   + +L E  G                  +   D I+      +L 
Sbjct: 1   MIRVLLVDDHALFRQGLRSLLESEGMRVIGEAANGREAIRYAADTHPDVILMDIQMPELD 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A     +      R   +   ++                Y     D A +   +  +
Sbjct: 61  GVKATQSILEIDP---RARVIMITMYRQDRYVFEAVKAGARGYVLKDADAATLLDAIRRV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++  D    +           K  ++   K  +L  RE   L  +++G ++ +IA
Sbjct: 118 ASGEALLDADLAQNVLDDF-----RDKREELPSEKHADLNERETMILKLLAQGFSNQDIA 172

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L IS  TV N ++ I  K     R+ A  YA+R  I
Sbjct: 173 LRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210


>gi|282865368|ref|ZP_06274420.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559841|gb|EFB65391.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A ++  +  +             G     L          +D  
Sbjct: 3   IRVLIADDQAMVRAGFAMILGAEDDIDVVGEA-----VDGLHAVELAERHRPDVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +          V+          F              + +       
Sbjct: 58  MPRMDGLEALRRLTRPGTVYPPKVV------VVTTFDDDEYVQRALGEGASGFLIKDSGP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +        ++       +         +  +          L+ RE + +  +
Sbjct: 112 ALLVEAIRAAASGEALVSPAITVRL------LRRLNNAVPTSREPHTALSEREKDLVRLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T+ EIA  L IS  TV  ++ ++  K + + R    A+A  + +V
Sbjct: 166 ARGLTNAEIATELTISVGTVKTHLGNVQTKLSARNRVEIAAWAWESGLV 214


>gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 250

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 20/218 (9%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV----SSDWPFDLVRCMALSEKDKYYNV 101
              +  L E  G +   L+            +           +       ++      +
Sbjct: 36  AKTLQNLLEVDGVALITLMIRPDHSINIERVVSSGFGFEAKSAEWGNIYQKNKFQYIDPI 95

Query: 102 LQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
           +     +      T                      G+       +F    I   L +  
Sbjct: 96  VSCSKSIRSSFNWTSVPSMMSLSESQLNFLEQAEEMGLKEGASIGSFSSRHIYKELNITS 155

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             GR +  ++L  + L+    A              ELT RE E L W SEGK+S EI +
Sbjct: 156 VSGRSLNSEQLATLELINTVSAQAMTRL---TNPVEELTKREREILAWSSEGKSSWEIGM 212

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I  I+  TV  ++ +I +K   + R+ AI  A+R  ++
Sbjct: 213 ICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRQGLI 250


>gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 229

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 15/226 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
           A+++ +D        +    +  G S   +          +      +V SD     V  
Sbjct: 3   AQLLLVDDEPGLREAVSDYLQESGFS-VQVASNAREGWDWMQQNTPDLVISDVMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               ++ +     Q    +F        + I       + Y    FD   +   +  L  
Sbjct: 62  YQFLKQLREDPRFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLLS 121

Query: 150 KG----------RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +            I + +   +I  + A                 +LT RE   L  ++E
Sbjct: 122 RRLTKATGEESETIDIAELANQIAQIKALLTQRSAISQSPAPFKIDLTPREQSVLNLVAE 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 GLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 227


>gi|315501316|ref|YP_004080203.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315407935|gb|ADU06052.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 225

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 7/204 (3%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 +    E VG +  +            D ++      D      L    + +  +
Sbjct: 29  AGVRAELGTRVEVVGEASSVAEAVTRIAATAPDVVLLDVHMPDGGGRAVLEAMRRTHPQV 88

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +        V     + I         Y + T     +   +  +     +        +
Sbjct: 89  RFL---ALSVSDAAEDVIGLIRAGARGYVTKTISPEELTDAIRRVADGDAVFSP----RL 141

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                          V   +  +LT RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 142 AGFVLDAFASRPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 201

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     R     +A    +V
Sbjct: 202 NVLRKLQMSNRYELSRWAADRRLV 225


>gi|288934571|ref|YP_003438630.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889280|gb|ADC57598.1| two component transcriptional regulator, LuxR family [Klebsiella
           variicola At-22]
          Length = 218

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                        A     G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRIL---------------EDIKGIKVAGEACCGEDAVKWCRAN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S        +     +   V    P          
Sbjct: 47  SADVVLMDMNMPGIGGLEATRKIARS--------VAGTKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRCVASGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|325068789|ref|ZP_08127462.1| two component system response regulator [Actinomyces oris K20]
          Length = 251

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 73/245 (29%), Gaps = 17/245 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
           RT+ V  +    D    +      V+    M  + E V G      +       +    +
Sbjct: 4   RTTGVIRVAVVDDQPLLVSAFSALVAAQPDMEVVLEAVNGRQAVEGLTARASGSRGEADL 63

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V  D    ++  ++   + +          L    F      +       + +     + 
Sbjct: 64  VLMDLRMPVLDGISAIRELRAAPATASLRVLVLTTFDDEDLVLAALGAGAHGFLLKDAEP 123

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI----------------GLLAAYQANMFKSYDVHWG 181
             +   + ++   G  +       +                   +A             G
Sbjct: 124 TTLLEAIRVVAGGGSWLDPAVTGTVLAHLDAGTGPGAPPSSASPSAPTDGAVPVVGAPSG 183

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE   L  + +G ++  I   L ++ +TV +++ +I+ KT    R   + YA+
Sbjct: 184 LYEALTVREDAVLALVCQGLSNASIGERLHVAESTVKSHVKTILGKTGCHNRVELVIYAL 243

Query: 242 RNNIV 246
              +V
Sbjct: 244 TTGLV 248


>gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 81/248 (32%), Gaps = 31/248 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q +I+L  ++      V       D    +            +                 
Sbjct: 4   QASILLVDDEPGIRESVQAYLEYGDEFQ-VQVASNAHQAWDFLQK--------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +       D ++     +  ++ +  +++ +   V+      F        + I      
Sbjct: 48  NPPDLVISDIMMPEVDGYQFLKKLRENQRYETIPVV------FLTARGMTSDRIQGYNAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYD------- 177
            + Y S  FD   +   +  L  + ++  +    + ++  +A     + +          
Sbjct: 102 CDAYISKPFDPEELEAIVKNLLERRKVNSQGNADVAQLAEIAQDIREIKEKLGHTENLTT 161

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  ELT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 162 TPPPIKIELTPREQSVLDLVAEGLMNKEIAARLDTSVRNVEKYVSRLFSKTGTNSRTELV 221

Query: 238 AYAVRNNI 245
            +A+++ +
Sbjct: 222 RFALKHGL 229


>gi|158318837|ref|YP_001511345.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114242|gb|ABW16439.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 214

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 60/228 (26%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A ++     +             G     L R        +D  
Sbjct: 2   IRILLADDQTLVRGAFALLVNSADDMEVVGEAGT-----GDEALTLTRDLRPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + S    +  R +   +      VL          F T    +         +       
Sbjct: 57  MPSTDGIEATRQIVADDGASGSRVL------ILTTFETDTNVLRGLRAGACGFLPKDTRP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++       +   A    +          +   LT RE E L  I
Sbjct: 111 DALLDAIRTIAAGEALLSPGATRAVITRALSHPDA-----PAPERLASLTAREREVLRLI 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G+++ EIA  L +S  T   ++  I+ K   + R   +  A    +
Sbjct: 166 AAGRSNQEIADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAGL 213


>gi|314934456|ref|ZP_07841815.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae
           C87]
 gi|313652386|gb|EFS16149.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae
           C87]
          Length = 220

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 72/240 (30%), Gaps = 25/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V IV+  +     +  S +    + +  +      V    ++                  
Sbjct: 3   VKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEY--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D ++           +  +   K          L   ++              
Sbjct: 48  -----KPDVLILDLSMPPGESGLVATS--KISESFPETKILILTMYDDEEYLFHVLKSGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFEL 186
             Y        ++ + +  ++     +  D      L+  +   +  +           L
Sbjct: 101 KGYILKNAPDEQLILAVRTVYKGETYV--DMKMTTSLVNEFINQSHQEEVSYSSDPFKIL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 159 SKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEYALKKKLL 218


>gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
 gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia
           rohdei ATCC 43380]
          Length = 237

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 69/235 (29%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L         +   +                G+   +      
Sbjct: 34  TIMIVDDHPLMRRGIRQLLELDSSFTVVAEANS---------------GSDAIVKAAQYQ 78

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     D           +   V     +         +
Sbjct: 79  PDVILLDLNMKGMTGLDTLKALRNEGID--------ARVIILTVSDARSDVYAMIDAGAD 130

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +       ++   + +        Y ++  +          ELT 
Sbjct: 131 GYLLKDSEPEILLDNIRHAAKGEKVFSNEVV-------IYLSSRHEQV----NPFAELTE 179

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 180 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMFLEN 234


>gi|296134693|ref|YP_003641935.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|295794815|gb|ADG29605.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 211

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 32/236 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCT-----VSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           DE R   +       + LAR +  +             M ++ +              + 
Sbjct: 2   DELRVLIIDDHALLGESLARFLGSNDMQAVWCGDLVEAMQSIRDR------------SWS 49

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      DL++ + L         L        P        +    G    Y
Sbjct: 50  VVLLDLSMPRGNGLDLLKRIKLMH-----PDLPVLILSMHP---EQQFALRALRGGAAGY 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +       +   +  +   GR +           A   AN     +        L+ RE
Sbjct: 102 LTKGCSPDVLVEAIQKVVHGGRYLTPGV-------AEQLANYMNEGEAAEEPHARLSDRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++    + EGK+ +++A  L IS  TV+ +   +M K A    +  + YA+   IV
Sbjct: 155 MQVFMRLVEGKSVNQVADELHISCKTVSTHKTRLMHKLALDNDADLVRYAMHQGIV 210


>gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 218

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 17/230 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R   V   P   D +AR +               T   GA    +          +D
Sbjct: 4   EAIRVLVVDDHPMWRDAVARDLGEAGIEVVG------TAGDGAKALRIAPAARPTLAVVD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +L   +                 L         + +         Y   + 
Sbjct: 58  LHLPDMSGVELTAGLVALSPPP--------RVLVLSASGASDDVLAAVKAGATGYLVKSA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     +         GL+      +  +      +  ELT RE E L 
Sbjct: 110 GREELLDAVRRVHAGEAVYTP---GLAGLVLGEYRRLSSADRSREPEAPELTPRETEVLR 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++G    +IA  LGIS  TV N++ + + K     R   + YA+   +
Sbjct: 167 LVAKGLAYKQIAQRLGISHRTVQNHVQNTLTKLHLHNRVELVRYAIDRGL 216


>gi|148262835|ref|YP_001229541.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146396335|gb|ABQ24968.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 217

 Score =  116 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + +     + H+         +                    G     + 
Sbjct: 1   MTPIRVLLADDHQLFREGLRHICEAVGEFEVVGEAAT---------------GTEAVTMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +           +     D           +   ++           
Sbjct: 46  RDLNPDVVLMDIQMPEMDGVRATAAITCERPD--------ARVIILTMYRQDTYVFEAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +   G I+  D    +  L   +       +     D 
Sbjct: 98  AGARGYLLKDGSGDDVVAAVRSVAQGGVILPPD----MASLVFEEFRRLAGDEQDGVPDE 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E++ L  I++G  + +IA  L ++  TV N ++ I  K   K R+ A   A+R  
Sbjct: 154 RLTPGEMDVLLRIAQGDDNRQIAAALNVTTKTVANRLSEIFSKLHVKNRTQAALTALRKG 213

Query: 245 I 245
            
Sbjct: 214 W 214


>gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 74/246 (30%), Gaps = 27/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + +VL  ++    + +  L      +  +     T +                
Sbjct: 1   MTTSADALRVVLADDEALVRAGLRMLIDGEPDMQVVGEAGDTAAV--------------- 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +V         +D  +      +  R +A            +   +    F       
Sbjct: 46  VAVVGRTRPDVVLMDVRMPGGGGIEATRRLAAQS--------PQVRVIVLTTFDEDAAID 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +   T     +   +  +   G  +    +  +  +A Y A          
Sbjct: 98  GALRLGAAGFLLKTSPPEMLLDAIRRVAAGGGQLDPMVVPRV--IAGYAA--APRMGERA 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E L  ++ G  + EIA +L +   TV  ++  ++ K   + R+ AIA+A
Sbjct: 154 PELDRLTPRETEVLQLVARGHNNAEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIAFA 213

Query: 241 VRNNIV 246
             + +V
Sbjct: 214 YDSGLV 219


>gi|297157878|gb|ADI07590.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 222

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + +  +   +      L    D +A +   +                G++   L    
Sbjct: 2   TTVAIADDQAMQRFGFRMLLESQDDMALVGEAET---------------GSAAVRLCAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S          R   L    F              
Sbjct: 47  QPDVVLMDIRMPGLDGIEATRRIVASGG--------RTRVLILTTFDLDEYAHAGLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFE 185
           + +         +  G+  +     ++       +    A+   A    + D    +   
Sbjct: 99  SGFLVKDARPEELLAGIRAVATGDAVVAPALTRRLLDRYAHHLPAPDASTADGTDPRLAA 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E LT I  G T+ EIA  L ++ +TV  ++  I+ K   + R  A+ +A    +
Sbjct: 159 LTGREREVLTAIGRGWTNGEIAQRLVVAESTVKTHVGRILAKIGGRDRVQAVIFAYDTRL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 231

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 17/228 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
           A+++ +D        +    +  G     +        + +      +V SD     V  
Sbjct: 3   AQLLLVDDEPGLREAVKEYLQESGFG-VRVASNAREGWELIQQNTPDLVISDVMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM---- 145
               ++ +          +F        + I       + Y    FD   +   +     
Sbjct: 62  YQFLKQLRDDPRFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLLE 121

Query: 146 -LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWI 197
             +     +       EI  LA   A +        G          +LT RE   L  +
Sbjct: 122 KRVTQTTVVGEDSENIEIAKLAHEIAKIKDLLSPKIGISQTPPPFAIDLTPREQSVLNLV 181

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 AQGLMNKEIARKLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 237

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 76/246 (30%), Gaps = 30/246 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D   ++ ++        +  M      VS    +                 +
Sbjct: 12  IRVMLVEDDPATSARLTSALASVPGIHVMATCQNRVSACEWLT---------------VN 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D++R            V+         +F      +   +   
Sbjct: 57  TPDVVLCDLGLPDGSGIDVIRFARRRHPHCECMVI--------TMFGDEANVLASISAGA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD-------RLWEIGLLAAYQANMFKSYDVHW 180
             Y         +R  +  L   G  +          RL +  + A        +  +  
Sbjct: 109 TGYLLKDASDEDLRASVRELRAGGSPMSPVIARRVINRLRDANIPAPRAVRAEPATPLLP 168

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E L  ++ G T  EIA  L IS NTV  +I +I  K A  +RS A+  A
Sbjct: 169 EAVVALSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVNSRSEAVFEA 228

Query: 241 VRNNIV 246
            +  ++
Sbjct: 229 HKLGLL 234


>gi|308272248|emb|CBX28854.1| hypothetical protein N47_B20000 [uncultured Desulfobacterium sp.]
          Length = 225

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 66/247 (26%), Gaps = 35/247 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             +  +++  +       +  L  +      +                    G    L V
Sbjct: 2   ASKKTVLIVDDHPLFRQGIKALLDKQPEYEVIDEAGS---------------GKEAILKV 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      D  R +           L     +   +   +        
Sbjct: 47  KKFEPDIVVMDISLPDQSGIDATREIIG--------FLPETHIMILSMHSKIDYIAEAFQ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y      V  +  GL ++      +          L+    N          K  
Sbjct: 99  AGALGYVVKESAVDGLIKGLDIIAKGEYFLDSS-------LSCEVVNRLMETPTKKTKAK 151

Query: 185 EL-----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L     T RE E L  ++EG     I   L IS  TV N+ A+IM K    +    + Y
Sbjct: 152 DLAYGALTPREQEVLRLLAEGMAPKAIGEKLFISPKTVENHRANIMSKLDLHSILDLVRY 211

Query: 240 AVRNNIV 246
           A +  ++
Sbjct: 212 AAKVGLI 218


>gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 245

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 30/233 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D ++    +       V
Sbjct: 12  NEDIKNYIQRRIKAYGDLRYSYLVMNK--KTPLHPAIISNYPLDWIKKYKKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +    +   P                   N+     + N Y  +  D       L +   
Sbjct: 70  ILTAKDKVAPFAWDDNSVINKKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNISNG 129

Query: 150 KGRIILRDRLWE-----IGLLAAYQANMFK-----------SYDVHWGKDFELTGREVEC 193
               I  D   E     I +L     +                          + RE E 
Sbjct: 130 NDDSIYFDESIEVNKEKIQMLLILTHDKMLGLYQKNINENNELGKVPNGREIFSPRENEI 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W S GKT  EIA+ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 190 LYWASVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242


>gi|134097815|ref|YP_001103476.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005549|ref|ZP_06563522.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910438|emb|CAM00551.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   P     L  ++     V             GA+    V     +   +D
Sbjct: 3   DPIRVVVVDDEPMVCAHLRTILGSAEDVEVVGDAQ-----DGAAGVEAVVRLRPRVVLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +        +  +A          +          F      +       + +   + 
Sbjct: 58  LRMPGVDGLTAIERIAKL---PEAPAVV-----ALTTFDADQYVLRALRAGASGFLVKST 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   + +      ++  +    +   +A +     S  V      +LT RE E L 
Sbjct: 110 PPEDLIGLVRVAADGHTVLSLEATRRLVAASADEHGQRASALVR-----DLTEREREVLA 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EG ++ +IA  L +S  TV  +++  M K     R+ A   A    +V
Sbjct: 165 CLGEGLSNAQIAERLFLSEATVKGHVSRTMTKLRCTNRTQAGLLAYDAGLV 215


>gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator
           [Pseudomonas sp. M18]
          Length = 215

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 15/204 (7%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +      +G  ++           +  + V   +P   +    +         +  
Sbjct: 1   VFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAVDPAILN 60

Query: 105 PTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                  V           +  N     G+             + + ++ +    + I  
Sbjct: 61  GLRSSEMVVWSDSLFDQSRMLWNEARDWGLCVGATLPIRAPNNL-LSVLSVARDQQNISS 119

Query: 157 DRLWEIGLLAAYQANMF------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
               EI L       +         + +       L+ RE E L W ++GK+S EIA+IL
Sbjct: 120 FEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSSGEIAIIL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRS 234
            IS +TVN +  +I +K     ++
Sbjct: 180 SISESTVNFHHKNIQKKFDAPNKT 203


>gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 221

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
                 V   P   D +AR    +   +       +T                   + D 
Sbjct: 7   PTTVMVVDDHPIWRDAVAR-DLAESGFAVVATADGVT----------AAQRRAGVVRPDV 55

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +V      D     A +              L         + +         Y   +  
Sbjct: 56  VVMDMQLPDGDGAQATAAVLAVSPS---SRVLVLSASDERDDVLQAVKAGAAGYLVKSAS 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   +        +        +  L   +                LT RE E L +
Sbjct: 113 KAELAQAVTDTAAGRAVFTPS----LAGLVLGEYRRIAQSKDDGPTRPRLTDRETEVLRY 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 169 VAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|292487899|ref|YP_003530774.1| putative 2-component transcriptional regulator UvrY [Erwinia
           amylovora CFBP1430]
 gi|292899120|ref|YP_003538489.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291198968|emb|CBJ46079.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291553321|emb|CBA20366.1| putative 2-component transcriptional regulator UvrY [Erwinia
           amylovora CFBP1430]
          Length = 219

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +   +C                          
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGIQVVGEANCGEDAVKWCRT---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++       +    A  +  +Y         +   +    P          
Sbjct: 46  ----HRTDVVLMDMNMPGIGGLEATRKIIRYAP---DCKIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMAL-------SQLEPQKSESPFCCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K +          A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLSISGDVELTHLAIRHGL 209


>gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 191

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 14/188 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G +   L    +     +D ++      + +R +          V  R   +    +H  
Sbjct: 8   GENATDLAAELVPDIVLMDLVMPGINGVEAIRMIKQ--------VSPRSQVIVLTSYHED 59

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y     +  ++   +        I+       +         +  + 
Sbjct: 60  EYIFPALRAGAISYVLKDIEPNQLVETVRRGVQGESIMHPRVAARV------VNEIRATK 113

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   EL+ RE+E L  I+ G T+ EIA  L IS  TV  ++++I+ K     R+ A
Sbjct: 114 QASPDPFSELSERELEVLRLIARGLTNAEIAESLFISGKTVKGHVSNILSKLHMLDRTKA 173

Query: 237 IAYAVRNN 244
             +A    
Sbjct: 174 AVFAWEQG 181


>gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 211

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 70/238 (29%), Gaps = 32/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            IVL  +     + +  L  R      +        +   +  L                
Sbjct: 4   KIVLVDDHSLFRNGLRGLLERCAGCRVVGEAASGEEFLAMLPGL---------------E 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +                 D           +   +F               
Sbjct: 49  TDVVFMDFAMPGLDGAQTTERALARRPD--------LRIITLSMFGEESYYSRMVQAGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     D+  +   +  +   G       L  +           ++ D     D +L+ 
Sbjct: 101 GFLLKDSDIGDVIEAIDAVMSGGSYFSPQLLSSLT-------GRMRTRDDV--PDEQLSV 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  +  G ++ EIA  L IS+ TV+ + A+I+ KT  K  +  + YA+RN IV
Sbjct: 152 REREILVAVCRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 209


>gi|297197553|ref|ZP_06914950.1| luxR family two-component system response regulator [Streptomyces
           sviceus ATCC 29083]
 gi|197715575|gb|EDY59609.1| luxR family two-component system response regulator [Streptomyces
           sviceus ATCC 29083]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 61/236 (25%), Gaps = 26/236 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + + L  + E     ++ L      ++ +                         +  
Sbjct: 10  QDPIRVFLLDDHEVVRRGITDLLDAEPDISVVGDAGTVE---------------HALVRG 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +       + R +     +           L    F      +    
Sbjct: 55  PALRPDVAVLDVRLPDGDGITVCRELRNQMPELAC--------LMLTSFDDEDALLDAIM 106

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y       + +   +  +     ++       +                   +  
Sbjct: 107 AGASGYVLKQIRGSDLVSAVRTVASGQSMLDPATTARL---MRSLRADPAETPAMAPELA 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ RE + L  I +G T+ EI   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 164 SLSPRERDILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLA 219


>gi|309792191|ref|ZP_07686663.1| two-component transcriptional regulator, LuxR family protein
           [Oscillochloris trichoides DG6]
 gi|308225732|gb|EFO79488.1| two-component transcriptional regulator, LuxR family protein
           [Oscillochloris trichoides DG6]
          Length = 204

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 18/217 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +     L   ++    +  + E   G S +  +         LD  +        ++ + 
Sbjct: 1   MVLREGLKTLIAAQPDIEVVGEAESGDSAWAQIEICQPDVITLDISMPHGDGIQTMKRIK 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +    +         L   V           A   + Y   +     +   + ++   G
Sbjct: 61  EAYPWIH--------VLILSVHDDASNLRQALAAGASGYILKSTAANALIQAIRIVAANG 112

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVI 209
             +         LL  +  + +             EL+ RE E +  + EG ++ +IA+ 
Sbjct: 113 FYLDP-------LLTPHVVSQYVQRSPATTNLLGSELSEREREVVQRVVEGYSNKDIALQ 165

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  TV  Y A  + K     R+  + YA+    +
Sbjct: 166 LNLSIKTVETYRARALDKLGLSGRAELVRYAIEQGWM 202


>gi|284046302|ref|YP_003396642.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950523|gb|ADB53267.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 244

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 63/240 (26%), Gaps = 21/240 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R +              ++  +                G     L R        +D 
Sbjct: 10  PIRVALADDQALVRAGFRMLLDAEDGFDVVGEA-----ADGEQAVELARASRPDVVLMDV 64

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       ++  +A + +      L     L    F              + +     +
Sbjct: 65  RMP------VLDGIAATRQISGDPALDSVRVLMLTTFELDEYVFEALRAGASGFLLKDVE 118

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD----------VHWGKDFEL 186
              +   L L+     ++       +    A  A                     +   L
Sbjct: 119 PVELLRALELIAAGEGLLAPSVTRRLIARFAALAPPPADAAGTADDGAAALPAAERLEVL 178

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E +  +  G T+ E+A  L IS  T   +++  M K   + R+  +  A  + +V
Sbjct: 179 TDREREVVALVGAGLTNHELAERLVISPATAKTHVSRAMGKLDARDRAQLVVLAYESGLV 238


>gi|161502599|ref|YP_001569710.1| transcriptional regulator NarP [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863946|gb|ABX20569.1| hypothetical protein SARI_00645 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 214

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+  V +++  +       +  L         +                    GAS   L
Sbjct: 3   EVTPVQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++                    + +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSERV--------NEYLRERERFGAQEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|332530117|ref|ZP_08406067.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332040590|gb|EGI76966.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 211

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L + +  +               +                 +
Sbjct: 2   IRVMIADDHAIVRGGLRQLLSLAPDIEVQAEAVDGAQVLEGLRR---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +      DL+  +          +L         V               
Sbjct: 47  LPDLLLLDVNMPGLSGPDLIARVKS--HWPTLPILVLSMHNEGQV------AARVLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   ++  +   +  +   G+ I+ +       LA                   L+
Sbjct: 99  SGYVTKDSEMEVLLAAIRKVAGGGKYIVPE-------LAEKLVFDVSLGSGDRLPHETLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +  G+  +EIA  L IS  TV+ +   +M K    + +  + YA+++ ++
Sbjct: 152 DREMEVFRLLLAGQGVNEIAEQLCISNKTVSTHKTRLMEKLNLGSTAELVRYAMQHGLL 210


>gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 213

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 17/222 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +        + E   G +   LV         LD  +      +
Sbjct: 5   IIADDHEIVRRGLRTVLESDGGCQVVAEAADGLAAVQLVEKHKPTVLILDLNMPRLHGIE 64

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++R    S              +   + +  P  I         Y     +   I   L 
Sbjct: 65  VLRQTRTSS--------PHTRVIILSMHNDEPYVIETLRAGAMAYILKGSESQEIVHALK 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSD 204
            +    R +          L+ +  N   +    +      +T RE   L   +EG ++ 
Sbjct: 117 EVLAGRRFLS-------APLSEWAINALVTKPADNSDPLQSITPRERMVLQLAAEGASNS 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  T   +  +++RK   +T++  + +A+R  ++
Sbjct: 170 EIAEKLFISPRTAETHRTNLLRKLGLQTQTDLVRFAIRKGLI 211


>gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein
           [Mycobacterium avium 104]
 gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104]
          Length = 221

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 60/215 (27%), Gaps = 12/215 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D    W   +       G +                  + D +V      D     
Sbjct: 10  VMVVDDHPIWRDAVARDLAESGFAVVATADGVATAQRRAGVVRPDVVVMDMQLPDGDGAQ 69

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A +              L         + +         Y   +   A +   +      
Sbjct: 70  ATAAVLAVSPS---SRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAVTDTAAG 126

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +        +  L   +                LT RE E L ++++G ++ +IA  L
Sbjct: 127 RAVFTPS----LAGLVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKL 182

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV N++ +  RK     R     YA+ + +
Sbjct: 183 SLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|84496167|ref|ZP_00995021.1| putative two-component system regulator [Janibacter sp. HTCC2649]
 gi|84382935|gb|EAP98816.1| putative two-component system regulator [Janibacter sp. HTCC2649]
          Length = 232

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 4/214 (1%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++  D    W   +       G              ++  +        DL       ++
Sbjct: 10  VLVADDHPLWLGALERDLAQAGLDVVATAADGPSTVRRTRATRPDVLVLDLNLPGMRGDE 69

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       L         + +         Y   +     I   ++       +  
Sbjct: 70  VCRALGDLETRVLILSASGEQLDVLAAIKAGATGYLVKSASSEDIVAAVLATARGEAVFT 129

Query: 156 RD----RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                  L E   +AA       +         ELT RE E L  ++ G +  EIA  L 
Sbjct: 130 SGLAGLVLGEFRRMAADDGEAVAAPQTADRPIPELTDRETEVLRLVATGMSYKEIAAELF 189

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S  TV N++ + + K     R   + +A+   +
Sbjct: 190 LSHRTVQNHVQNTLGKLHLHNRVELVRFALARGL 223


>gi|255323701|ref|ZP_05364829.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
 gi|255299191|gb|EET78480.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
          Length = 217

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 72/237 (30%), Gaps = 23/237 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +VL  ++      +  +   +  ++ +                    G     L+
Sbjct: 1   MSEIRVVLVDDEPLLRHGLRMILEGAPGISVIGEAGN---------------GKEGVELI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  +      +    +      +   V+          F T    +    
Sbjct: 46  LAEEPDVVLMDIRMPVMDGIEATAQLHSLAGARDIPVV------MLTAFDTDEFILHALR 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T     +   +       + +    L  +  LAA      +      G   
Sbjct: 100 AGAVGFLLKTTAPEALVASVRAAAQGQQQLSPKVLENLVGLAATPPQPEQEMIQPSG-LA 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EL+ RE E    +++G ++ EIA  L IS  TV  ++  I+ K     R   IA AV
Sbjct: 159 ELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IAIAV 214


>gi|271970494|ref|YP_003344690.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513669|gb|ACZ91947.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E      S +      +A +                    GA     VR  
Sbjct: 3   IRVVVADDQELVRGGFSMILDAQPDIAVVAEAGD---------------GAEAVAAVREH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +                 L    F              
Sbjct: 48  RPDLLLLDIRMPRMDGIAAARVVCEET---------DTKVLMLTTFDQDDYVYDALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +      +     +          LT
Sbjct: 99  SGFLLKDVRRDDLVQAVRVVAGGESLLAPSVTRRLIDDMVRRRARPPAPAAALD---MLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ EIA  + +S +TV  ++++++ K   + R  A+  A    ++
Sbjct: 156 ARERETLELLGRGLSNAEIAATMVVSEHTVKTHVSNVLTKLGLRDRVQAVITAYETGLI 214


>gi|144900206|emb|CAM77070.1| transcriptional activator protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 237

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           S++   ++ ++   S    +  L +      F             +    + +P + +  
Sbjct: 6   SEMTEELLWVEDISSAQDSLRRLAKLANVDFFAYGNSRP---GLENPYWDATYPTEWMEH 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHT--------------LPENITPPAGMDNRYCSLTF 135
              +       V+        P                  L        G+ + +     
Sbjct: 63  YFANRYQFIDPVVLEAQRSHLPFAWRFLLNRPGAMSPEQKLLFAEAAKYGIRDGFTIPFH 122

Query: 136 DVARIRIGLMLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                   +   F     +         + LLA Y     +        D EL+  E +C
Sbjct: 123 SDNGCIAAMSFAFRSRAEMEHFANMQPRLKLLALYYHTAIERLLEVEIPDDELSAMERQC 182

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LT++++G++  EI+ +L    + V + + S   K    T + A+  A+   ++
Sbjct: 183 LTFLADGRSLWEISGLLHRPESDVTSSLRSARDKLGAATTAQAVHKAIAEGLI 235


>gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
           +R++ +D        +    E  G   F+ V  +      +     ++ SD         
Sbjct: 15  SRILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDVMMPRANGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           AL EK +    L     +F        +         + Y S  FD   +   +  +  +
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 151 GRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISE 199
              +L++       ++  +A     +          + E        T RE   L  ++E
Sbjct: 135 QERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKINLPSFTPREASVLQLVAE 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ NN+V
Sbjct: 195 GLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNLV 241


>gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942]
 gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942]
          Length = 199

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 61/218 (27%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   ++    M  + +   G       + +      +D  +      +  
Sbjct: 7   AEDQQMLLGALGSLLNLEDDMEVVGKGTSGQDAVDFAKKNQPDVCIMDIEMPGKNGLEAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +                 +    F              + Y         +   +  +
Sbjct: 67  EELKDLG----------CKIIILTTFARSGYFQRAIKAGVSGYLLKDSPSEELASAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   + + +I   A                   LT RE E L  +++GK + EIA
Sbjct: 117 MDGKRIYAPELMEDIYSEAN-----------------PLTEREKEVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI+ I+ K   K R  AI  +     
Sbjct: 160 NELSIKSGTVRNYISMILDKLEVKNRIEAITRSKEKGW 197


>gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 224

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 30/235 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  + + +  +  +           R+ A                
Sbjct: 17  VRVFLLDDHEIVRRGIREMLSENGDIEVVGEASTAAEALRRIPAT--------------- 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D+ R +  +  +    +L          +              
Sbjct: 62  RPDVAVLDARLEDGNGIDVCRDLRSAHPEIGCLIL--------TSYDDDDALFAAIMAGA 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++                   +       K   L 
Sbjct: 114 AGYLLKQIRGTDLVGAIRTIAAGRSLLDPAVTQR-------VLTRLREGPAEDRKLATLG 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  YA R
Sbjct: 167 ERERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 221


>gi|294628886|ref|ZP_06707446.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
 gi|292832219|gb|EFF90568.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
          Length = 222

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 59/233 (25%), Gaps = 19/233 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D +AR    +            T   G                LD  
Sbjct: 1   MRVMVVDDHPMWRDAVAR-DLAESGFEVV-----ATAGDGEQAVRRALAAAPDVLVLDLN 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       + + +                 L         + +         Y   +   
Sbjct: 55  LPVKPGVQVCKELVAHN--------PALRVLVLSASGEHADVLEAVKSGATGYLLKSAST 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDFELTGREVE 192
             +   +        +        +      L A          D        LT RE E
Sbjct: 107 QELLDAVRRTAAGDPVFTPGLAGLVLGEYRRLAAEPAPAAGAGTDGPEPGAPRLTERETE 166

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+   +
Sbjct: 167 VLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 219


>gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 67/219 (30%), Gaps = 12/219 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-----EQKLDSIVSSDWPFDLV 87
           + R++ +D          AL +       +    D  +           +V  D     V
Sbjct: 1   MIRVLVVDDQEMVREGFSALLDAQPDITVVGAAGDGAEGVAKVRALRPDVVLMDVRMPGV 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  +              L    F              + +         +   + ++
Sbjct: 61  DGIEATGMLADDP----ARVLVLTTFDLDDYVYEALRAGASGFLLKHAPARELLDAVRVV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++       +  +  +         V       LTGRE E L  ++ G ++ E+A
Sbjct: 117 ARGDALLAPSITKRL--IEDFVRARPARA-VRPPALTALTGRETEVLLMVARGLSNAEVA 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  TV  +++ ++ K   + R+ A+  A  + +V
Sbjct: 174 RGLNVAEQTVKTHVSRVLTKLGLRDRAQAVIAAYESGLV 212


>gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 216

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 16/224 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +             G     L R        +D  +      
Sbjct: 2   RVIIADDHALFRDGLRSLLEARGVEVVAEARNGREAVELARQLRPDIVLMDLTMPVMGGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R ++          L     +         +           +     +  +    L
Sbjct: 62  EATRLISAE--------LPDVNVVVLTASEDDADLFEAVKSGAEGFLPKNLEAEQFFDLL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT- 202
             +      +      ++           +       +  E LT RE E L  + +G T 
Sbjct: 114 QGVTEGQPALTPGLARKV------LNEFARPAAPRPERTAEELTEREREVLELLVQGVTS 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++A  L +S NTV  ++ +I+ K   + R+  IAYA+R+ +V
Sbjct: 168 NKDLADRLFVSENTVKYHLRNILNKLHLQNRAQVIAYALRHGLV 211


>gi|153835526|ref|ZP_01988193.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
 gi|148867896|gb|EDL67113.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
          Length = 212

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 63/239 (26%), Gaps = 32/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++V+  + +               +AR+  L+  +         T   G     + + 
Sbjct: 4   PISVVIADDHQVVL---------DGFMARL-ELEPDIDVIG-----TASNGLEAIEVSKL 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +                 L   +       +      
Sbjct: 49  LNPDVILMDISMPIMNGIEATGMIKEER--------PESKILMLTMHDNREYIMKVMQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        ++   +  +              +           +       K   L
Sbjct: 101 AVGYMLKEISAEKMVQAIKTVNQGSTYFCESVTQTL---------FTQDVVPAAQKPNPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA    +
Sbjct: 152 SRREEAVLKLVAQGHSSKKIATLLDISYRTVETHRHNIKHKLDLHSTAELAKYAFETGL 210


>gi|18413618|dbj|BAB84309.1| putative nitrate/nitrite response regulator [Halomonas
           halodenitrificans]
          Length = 221

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +       +   P     L R             + A           L R        L
Sbjct: 7   DHPATILLIDDHP-----LLRRGVSQLLELEDDLLLAGETGEPEDGIRLARELDPDMVLL 61

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      + ++ +                 +   V     + +       + Y    
Sbjct: 62  DLNMPGMDGIETLKRLRSGGF--------AGRVVMFTVSDHEEDVVNALQSGADGYLLKD 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   +   L        +I       +        N   + D+H      LT RE E L
Sbjct: 114 MDPDEMVRQLRQASLGRMVISESLTALLAEALRSHRNQPAAPDIHS-----LTQREREIL 168

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ G ++  IA  L I+  TV  ++  +++K   ++R  A  +AV+  I
Sbjct: 169 RELAAGLSNKMIARKLEITEGTVKVHVKHLLKKLNLRSRVEAAVWAVQEGI 219


>gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
 gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium
           ulcerans Agy99]
          Length = 218

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 18/234 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++  +      V   P   D +AR    D   +       +                   
Sbjct: 1   MSEHESPTVMVVDDHPIWRDAVAR-DLSDDGFAVVATADGVA----------TAQRRAAI 49

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            K D +V      D     A +E  K     +              + +         Y 
Sbjct: 50  VKPDVVVMDMRLADGDGVQATTEVLKVSPATRVLVLST---SDEREDVLEAVKTGATGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +   A +   +        +        +  L   +                LT RE 
Sbjct: 107 VKSASKAELADAVRATAAGRAVFTPS----LAGLVLGEYRRIAQTADSSQDRPSLTERET 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L ++++G ++ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 163 EILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQLANRVELTRYAIEHGL 216


>gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
 gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas
           paucivorans DSM 12260]
          Length = 211

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 37/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +    TR      +       +    M                  
Sbjct: 3   ITLILADDHPLTREGLRAYLTREPEFRLLGDYADGDAAWKAMVEF--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +       L R +               T L    +   P  +       
Sbjct: 48  KPRVALLDVRMPGQDGVSLARRIKQEGLP--------VTALMLTSYDAQPYVLASLKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     +   + ++   G  +  +    +                       ++
Sbjct: 100 RGYVLKTSPAETLCRAIRVVAQGGLFLDSEVAEAM--------------GGDAFVPEPIS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G +S EIA  L IS  TV  ++ASI  K   K ++ A+  A+R  +V
Sbjct: 146 PREREVLVQAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYGLV 204


>gi|307330023|ref|ZP_07609174.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884284|gb|EFN15319.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 216

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 63/241 (26%), Gaps = 28/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q  ++L  +       ++      D  A +    C                       
Sbjct: 1   MPQWRVLLVDDHPLFREGLAAAVNLDDAFAVVGQAACADGAIAEAVRTG----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +     +           L   +       +    
Sbjct: 50  ----PDLVVMDLGLPGRSGLEATRRILCDHPEI--------RVLVMTMSEDDDSLLAAVR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         I   L  +   G +        +G L     +             
Sbjct: 98  AGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGALVGASGSASAKEAFP----- 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G    +IA  L ++  TV N++ SI  K   + R+ AI  A +  
Sbjct: 153 TLTAREREVLDLLAAGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRARQAG 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 221

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 72/245 (29%), Gaps = 31/245 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             +  + I++  +D      +            +   +                G     
Sbjct: 7   LLLNPMRILIVEDDPLMQLGLEQALGEHPNFEIVGQAED---------------GYIGVQ 51

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +         + +           +         +     E +  
Sbjct: 52  KALELKPDLVVMDIGLPRLDGIAATKQIKEQL-----PDIHVVMLTSHTLQT---EVVAA 103

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +   + YC     + R+   +         +          +A    +  K       +
Sbjct: 104 LSSGADAYCIKGASLERLLAAIEAAQDGATYLDP-------QIARLVLDNLKPPTSEPNQ 156

Query: 183 DFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  L + RE+E L  I EGK++++IA  L +S NT+  ++  IM K A   R  A   A+
Sbjct: 157 NISLLSERELEVLKLIVEGKSNNQIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVAL 216

Query: 242 RNNIV 246
           R+ +V
Sbjct: 217 RSGLV 221


>gi|118136465|gb|ABK62855.1| transcriptional regulator [Halomonas anticariensis]
          Length = 217

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +        + E   G     L R        +D  +      
Sbjct: 4   VLVADDHHLVRTSIARMLDAEEGFAVVGEAADGEEAIALARRHRPDIVLMDIRMPGVSGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +          V+          F              + + S   ++  +   L
Sbjct: 64  EATRKI-TKGMSDIKVVV-------LTAFLEENFAERLLNAGASGFISKGTELGDMVAAL 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F   R I  +    + L            D        L+ RE++    I   +T  
Sbjct: 116 RAVFSGQRYISPEIAQRVVL---------AKVDAQDNPFDTLSHRELQVAMMIVNCQTVS 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S  TVN Y   I  K    +        +R+ +V
Sbjct: 167 DISDRLFLSPKTVNTYRYRIFEKLGVHSDVELTHLGLRHGLV 208


>gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 216

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    +    D +  +   +                G          
Sbjct: 2   IRVLLVDDQSMVRTGFRTILESEDGITVVGEAEN---------------GQVAIDRALDL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 L    F          A   
Sbjct: 47  APDVICMDVQMPVMDGLESTAEIVRRG--------AAGAVLILTTFDRDDFLFQALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   T +  ++   +  L     ++  +    +           +S      +   LT
Sbjct: 99  SGFLLKTAEAEQLIDAVTALAGGDGLLSPEVTRRVI---ERSVRSPESTTPAAPELELLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE+E L  ++ G ++ EIA  L +   TV  ++++++ K   + R   + +A +N +V
Sbjct: 156 GRELEVLHLVAGGLSNSEIAGRLFVGEATVKTHVSNLLTKLDIRDRIHVVIFAYQNGVV 214


>gi|319949743|ref|ZP_08023770.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
 gi|319436589|gb|EFV91682.1| two component transcriptional regulator, LuxR family protein
           [Dietzia cinnamea P4]
          Length = 226

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 64/240 (26%), Gaps = 19/240 (7%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  +     S V         +  +            +                    
Sbjct: 1   MFLVDDHAVFRSGVRAELAGQSAIEVVGEAGSVGEAVAGIGRA---------------HP 45

Query: 70  QEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTE-LFCPVFHTLPENITPPAGMD 127
               LD  +       ++R  +                  L   V     + I       
Sbjct: 46  DVVLLDVHMPDGGGVAVLRSVLGADPGGVADPARAPEPTFLALSVSDAAEDVIAVIRAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE- 185
             Y + T     +   +  +     +       + +   A       +  +     + + 
Sbjct: 106 RGYVTKTITGDDLADAVRRVADGDAVFSPRLAGFVLDAFARAAPGPEERGEPVHDPEVDS 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  ++ G T  EIA  L IS  TV  + ++++RKT    R     +A   ++
Sbjct: 166 LTPREKEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRHALTRWAQSRHL 225


>gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 218

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 60/223 (26%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +             G     L R        +D  +      
Sbjct: 2   RVLIADDHALFRDSLRTLLEARGVEVVGEAETGKEAVELARELRPDVVLMDLKMPGMDGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R             +     +         +           Y        +    L
Sbjct: 62  AATR--------MISAEMPEVKVVVLTASEDDEDLFEAVKSGALGYMFKDVRSDQFFELL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT-S 203
                           ++         M K       +   LT RE E L  + +G T +
Sbjct: 114 EAASRGEPAFTPGLARKL------LREMSKPAGRAEREPEVLTEREQEILELLVQGVTSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  L +S NTV  ++ +I+ K   + R+  +AYA+++ +V
Sbjct: 168 KELAERLILSENTVKYHLRNILDKLHLQNRTQVVAYALQHGLV 210


>gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
 gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13]
          Length = 249

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +      +G+  +         +   D ++ S +P + V     +       V+  
Sbjct: 15  LRDHIDRKLSSLGSPEYAYTVVRK--KNPSDVLIISSYPDEWVDLYRANNFQLTDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
             +   P        +                 + N +  +  D       L ++     
Sbjct: 73  AFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIANNG 132

Query: 153 I-----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWI 197
                  L      + +L                   +           T RE E L W 
Sbjct: 133 QEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWA 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA I GIS +TV  ++ +I+ K        AI   V   ++
Sbjct: 193 SMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|302544568|ref|ZP_07296910.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462186|gb|EFL25279.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 240

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 75/245 (30%), Gaps = 26/245 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E ++  +VL  +     + V                   V        + +        +
Sbjct: 20  EARRCRVVLVDDHRMFRTGVQAEIG--------ETARTGVEVVGEAADVDQA-----VTV 66

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     +   LD  +      +++R  A         V      L   V     + I   
Sbjct: 67  ITATRPEVVLLDVHLPGGGGVEVLRRSAALMAATERPV----RFLALSVSDAAEDVIGVI 122

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G    Y + T     +   +  +     +           LA +  + F S D     +
Sbjct: 123 RGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPR-------LAGFVLDAFASTDAPPVDE 175

Query: 184 F--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A 
Sbjct: 176 DMDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWAT 235

Query: 242 RNNIV 246
              +V
Sbjct: 236 ARRLV 240


>gi|284031285|ref|YP_003381216.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283810578|gb|ADB32417.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +    D +  +                    GA    LV+  
Sbjct: 2   IRVLLADDEAMVRAGVRAILGSDDSIEVVAEAGD---------------GAEAVELVQKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +  +              +    F              
Sbjct: 47  RPDVAVLDIRMPRMDGLAAGAEIRRTA--------PGTAVVILTTFSEDAYIAKALGDGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
           + +   + D   +  GL  +      +       +   L A               +   
Sbjct: 99  SGFLLKSGDPRELIAGLKAVAEGAAYLSPKVAQRVIAELGAGTGGGRMARAAAAKDQVDV 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+ +  G ++ EIA  L +   TV  Y+++++ +   K R  A   A    +
Sbjct: 159 LSPRELEVLSLVGAGLSNAEIAARLFLVEGTVKAYVSAVLTRLGVKNRVQAAIIAYEAGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|302525941|ref|ZP_07278283.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434836|gb|EFL06652.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 214

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 18/227 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             V  L    + L R   L   V     +  + E   GA    LV         +D  + 
Sbjct: 1   MSVRVLLVDDERLIR-AGLRAIVDSEPDLTVVGEAADGAEVPGLVGQLRPDVVLMDVRMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +         +  +           P  +    F              + +         
Sbjct: 60  AVDGIRATEHLLST---VEDP----PKVIVVTTFENDDYVYDALLAGASGFLLKRARPEE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I  G+  +     ++    +  +           +           LT RE + L  ++ 
Sbjct: 113 IVAGIRTVLAGDSLLFPAAIRGMA---------ARRSPGAAAPLDFLTERERDVLRLMAA 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 164 GLSNGEIAAELYLGLQTVKTHVGNVLSKLGARDRTQAVIRAYESGFV 210


>gi|238919142|ref|YP_002932656.1| nitrate/nitrite response regulator protein NarP [Edwardsiella
           ictaluri 93-146]
 gi|238868710|gb|ACR68421.1| nitrate/nitrite response regulator protein NarP [Edwardsiella
           ictaluri 93-146]
          Length = 215

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 34/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       V  L     + + +                    G+    L     
Sbjct: 12  RVMIVDDHPLMRRGVRQLLELDSVFSVVAEASN---------------GSEAIALAGRSQ 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     D           +   V     +         +
Sbjct: 57  PDLILLDLNMKGLSGLDTLKALRSEGID--------ARIIILTVSDARSDVYALVDAGAD 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +                +    +         +LT 
Sbjct: 109 SYLLKDSEPEALLAQIRQAAEGRSVFSES-----------VSAYLSTRSEIADPLADLTE 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ L  +  G ++ +IA  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 158 RELDVLQEVVRGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAATVLYLE 211


>gi|188534205|ref|YP_001908002.1| response regulator [Erwinia tasmaniensis Et1/99]
 gi|188029247|emb|CAO97124.1| Response regulator protein [Erwinia tasmaniensis Et1/99]
          Length = 219

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +   +C         A                
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGIQVVGEANCGEDAVKWCRA---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  STDVVLMDMNMPGIGGLEATRKIIRYAPD--------CKIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQEVISAIRSVNAGQRYIASDIAQQMALSQI-------EPQRAESPFSCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|87122320|ref|ZP_01078202.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
 gi|86162463|gb|EAQ63746.1| transcriptional regulatory protein degu [Marinomonas sp. MED121]
          Length = 206

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 36/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q + ++L  +       +       D +  +   +  +    +   L            
Sbjct: 1   MQTIKVLLVDDHMLVLDGLKARLELEDNIKVIGIANNGIEALEQSKKL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  +     + DK          L   +       ++   
Sbjct: 49  ---DPDVVLMDVSMPVLNGIEAAKRFQTEQPDK--------KVLMLSMHQDKEYILSIIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y       A + + +  +   G          +  +                +  
Sbjct: 98  TGASGYVLKDVPAAELVLAIETVIRGGSYFSSGASQALYQV-------------QEDEKE 144

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE+  L  ++ G  +  IA  L IS  TV  +  ++ +K    + +G   YA+ + 
Sbjct: 145 ELTKRELAVLKELASGAANKTIANNLSISVRTVETHRQNLKQKLGIHSAAGLTKYAIEHK 204

Query: 245 IV 246
           ++
Sbjct: 205 LI 206


>gi|331699089|ref|YP_004335328.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953778|gb|AEA27475.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 227

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  +     + V          A +      V       ++ E         +R  
Sbjct: 14  ISVFLVDDHGLFRAGVR---------AELDRGVPDVEVVGEAGSVDEA-----VAAIRHL 59

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++R +                 L   V     + I       
Sbjct: 60  RPDVVLLDVHMPDGGGAEVLRRIR--------PECPDVVFLALSVSDAAEDVIAVIRAGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + T     +   +  +     +         G +    ++   +      +   LT
Sbjct: 112 RGYVTKTISGRDLADAVRRVHGGDAVFSP---RLAGFVLDVFSDRPGAAPPGDPELDLLT 168

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G    EIA  L IS  TV  +++S++RKT    R     +A    +V
Sbjct: 169 RRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 227


>gi|262202778|ref|YP_003273986.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086125|gb|ACY22093.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 220

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +     + +  L    D +  +              A+               
Sbjct: 12  LSVVLADDHAIVRAGLRALLAHHDDIRVVAEATTADEAVRLCTAVL-------------- 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                ++D ++      D    +  + + +               + T  + +       
Sbjct: 58  ---GTRVDVVLMDLRFGDGRGGVEATRQIRESPNAPSVLV--LTNYDTDADILAAIEAGA 112

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +         +       +               +    D  LT
Sbjct: 113 SGYLLKDTPPEELVSAVRGAAAGESALSPAVASRLL------------SRMRTPPDTVLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  ++ G+++ +IA  L +S  TV +++     K    +R+ A+A A R  ++
Sbjct: 161 PREIEIIAEVATGRSNRQIARELMLSEMTVKSHLVHAFTKLGVGSRTAAVAEARRRGVI 219


>gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 212

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 22/227 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   + +AR +              +   +G     +          +D  +
Sbjct: 3   RVMIVDDHPMWREGVARDLGSR-GYDVCATASDVAGAIG-----IALATRPDVVVMDLQL 56

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D  R +           L     L         + +       + Y   +  + 
Sbjct: 57  GDGSGVDATREITA--------ALPDTRVLVLSASAEQSDVLAAVKNGASGYLVKSASLD 108

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +        +           LA      ++          +LT RE E L  ++
Sbjct: 109 EFDDAVRRTAEGDAVFS-------AGLAGLLLGEYRRLGAGPE-VPQLTERETEVLRLVA 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G T+ +IA  L +S  TV N++ + +RK     R+  + YA+ N I
Sbjct: 161 RGLTAKQIAQRLVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENGI 207


>gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica]
          Length = 249

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +      +G+  +         +   D ++ S +P + V     +       V+  
Sbjct: 15  LRDHIDRKLSSLGSPEYAYTVVRK--KNPSDVLIISSYPDEWVDLYRANNFQLTDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
             +   P        +                 + N +  +  D       L ++     
Sbjct: 73  AFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIASNG 132

Query: 153 I-----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWI 197
                  L      + +L                   +           T RE E L W 
Sbjct: 133 QEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWA 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA I GIS +TV  ++ +I+ K        AI   V   ++
Sbjct: 193 SMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|124003337|ref|ZP_01688187.1| transcriptional regulator, LuxR family [Microscilla marina ATCC
           23134]
 gi|123991435|gb|EAY30866.1| transcriptional regulator, LuxR family [Microscilla marina ATCC
           23134]
          Length = 219

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE--QKLDSIVSSDW 82
           +    D    +  L+  +  T  +  +     G   F L+  +        LD  +    
Sbjct: 9   VIIADDHHMVLEGLEALIKVTNDIEVIGLAYNGHHAFKLLELNQLDVDIAVLDVDMPVQD 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +     +           L   + +         A   + Y       + +  
Sbjct: 69  GLETTRKIRTEYPNI--------KVLILTMHNNESYIKEIIAAGASGYILKNRGASELVN 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  ++       +     +        ++ +S         +LT RE E L  I +G T
Sbjct: 121 AIRTIYAGEEYFSKAVTDTL------IKSIQESKKAKPNPQVKLTKREKEVLALIGKGMT 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EI+  L I+  TV  +  +++ K   K     I Y  +N
Sbjct: 175 TKEISKQLFIADTTVETHRRNLIDKLEVKNSKELILYVAKN 215


>gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 212

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 14/224 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +++L    D       L   +     ++ + E   G          L     +D  + S 
Sbjct: 1   MANLLLAEDQHLVRQGLKMMIEQDETLHVIAEASNGQEAVEAYERYLIDLVLMDVRMPSK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  + +                 L    F      +         Y     D  R+ 
Sbjct: 61  TGLEATKEIRARH--------PEAKILILTTFADDEYALEALKYGACGYLLKDADADRLI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +      G  +      ++     +     +       +   LT RE+  +  + EGK
Sbjct: 113 HSIKSALNGGMSLDDTVAAKVLPRLLH-----QQTGEVEERTARLTKRELAVVKLVGEGK 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L +S  TV NYI+  + K   + R+    YAV+  +
Sbjct: 168 SNQEIADALFLSVGTVKNYISQALDKLELRDRTQLAIYAVKQQL 211


>gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 212

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 12/221 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           +     +  + E   G     L R        +D  +       
Sbjct: 2   LIADDQALVRAGFRLILDGEPDIEVVGEAADGDQAVRLARQLRPDVTLMDIRMPGVDGLR 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +A  +      V +    +    F                +         +   + 
Sbjct: 62  ATELLAGPD------VPEPLRVVMVTTFGLDENVHAALRAGACGFLLKDAGPNLLVEAVH 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  ++       +  LA Y     +        +  LT RE++ +  ++ G+T+DE
Sbjct: 116 AAAHGEALVSPAITTRL--LAHYARRAPRRVTP---PESPLTPRELDVVKAVARGETNDE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L +S  TV  +I +  RK   + R+    +A  + +V
Sbjct: 171 ICRSLVVSMPTVKTHIGAAKRKLGVRNRTEIAIWAWESGLV 211


>gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai]
          Length = 243

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 17/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   +        +  L   +   ++L    +     K D  +  ++P    +     + 
Sbjct: 11  LRLSENDNDLNACLTKLALLLDCEYYLFAILNPVSIFKSDLYILDNYPSCWKKYYNDEKL 70

Query: 96  DKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDVARIRIG 143
             Y  ++      + P+  ++ E                 + + + +             
Sbjct: 71  IDYDPIIDYSASNYAPIIWSMLEQSKWDKNKTNVIEEAKNSNLKSGFSFPVHTKNNSFGV 130

Query: 144 LMLLFPKG-----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +             +      + + +L     +  +          +LT RE ECL WIS
Sbjct: 131 ISFANSNNEKTLISLHSNSYSYVLLVLPELLDSHQRINKNIGNTCTQLTPREKECLAWIS 190

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EGKT+ EI+ IL  S  TV+ +I ++  K  T  RS +I+ ++   
Sbjct: 191 EGKTTWEISKILDCSERTVSFHITNLQTKLGTNNRSQSISKSILTG 236


>gi|332712354|ref|ZP_08432281.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332348828|gb|EGJ28441.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 243

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 76/258 (29%), Gaps = 32/258 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + L  + +     +     ++  +  +            +               
Sbjct: 1   MGKIRVALIEDHDLTRMGLRTALQQNGEIELVGEAANAAEGLKLLAE------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPVFHTLPENITP 122
                    +D  +      +L R     +  +  +             +       +  
Sbjct: 48  --SRPDIGIVDIGLPDMDGTELTRQFKEFQAKQDDSKQDDFPTKIMVLTLQDDEEAVLAA 105

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A   + YC       ++   L + +     I    +  I L     +   +  +    +
Sbjct: 106 FAAGADSYCMKNITFDQLVEALKVTYEGNAWIDP-AIARIVLEQIKPSQETQPTEASETR 164

Query: 183 D--------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                          + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K 
Sbjct: 165 AIHAAPNEYNQMIEAYPLTERELEVLRLIVEGCSNALIAERLYITVGTVKTHVRNILNKL 224

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A   A+R+ +V
Sbjct: 225 CADDRTQAAVRALRSGLV 242


>gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 223

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 62/215 (28%), Gaps = 10/215 (4%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRC 89
           R++  D           +    G              D  +  + D ++      +L   
Sbjct: 6   RVVIADDQALVRAGFRMILSGHGIDVVAEATDGTEAVDAVRRTRPDVVLMDIRMPELDGL 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A             P  +    F              + +         +   + L+  
Sbjct: 66  EATRRIMTGAA--DEPRVIMLTTFDLDQYVYAALTAGASGFLLKDVSPEYLVAAVRLVRS 123

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++       +       A               LT RE+E L  ++EG ++ E+A  
Sbjct: 124 GDALLAPAITRRL---VERFARRDTDTPAIHRDLSALTARELEVLRLLAEGLSNAELAER 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  TV +++A I+ K   + R  A+  A R  
Sbjct: 181 LHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTG 215


>gi|331696674|ref|YP_004332913.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951363|gb|AEA25060.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 66/240 (27%), Gaps = 32/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++E   + +  +      +  +            +  L               
Sbjct: 9   IGVLLVDDEELVRTGLRAILDSEPGIRVLGEAADGAEVPGLVARL--------------- 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +       R +                 L    F              
Sbjct: 54  RPAVVLMDVRMPTVDGITATRALLARPDPP--------RVLVLTTFGNDGHVYEALRAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186
             +       A I   +  +     ++    + E+   +     +              L
Sbjct: 106 TGFLLKRARPADIVSAVRTVASGESLLFPAAVRELVAAVGPDTGDRLAGRG--------L 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 158 TDRESEVLRGMARGLSNAEIAAELVLGVETVKTHVGNVLAKLGVRDRTQAVVAAFESGFV 217


>gi|313896828|ref|ZP_07830375.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974275|gb|EFR39743.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 217

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 60/226 (26%), Gaps = 18/226 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             +         +  ++        T    +  E +      L+         LD  +  
Sbjct: 5   MIIDDHLLIRAGIKLLLKNARDYRVTAEAGSAEEAL-----TLLAETPVDLVILDISMPG 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                 +R +        Y  ++                          Y   T     +
Sbjct: 60  MGGLAAIRAIGAQ-----YPAVKILVPSM---HEDEEYIYKAMQSGAMGYLPKTSADDEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  L    R +  +    +       A   +  D        LT RE E    +  G
Sbjct: 112 FDALHALAEGRRYLSPNAQQSL-----LAAMFSRPGDAEEDPRARLTEREKEVFDRLIRG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T  E A  L +S  TV+ +   I  K     RS  +A A+R+ ++
Sbjct: 167 YTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHGLL 212


>gi|255325408|ref|ZP_05366512.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
 gi|255297494|gb|EET76807.1| transcriptional response regulator, receiver domain
           [Corynebacterium tuberculostearicum SK141]
          Length = 219

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 73/241 (30%), Gaps = 23/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +     + +S +    D +  +   +                G+      
Sbjct: 1   MPKIRVLLADDQAMLVAALSTILNAQDDIEVVATANT---------------GSEAVTAA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +         + +           +     +    F+         A
Sbjct: 46  LSHRTDVAILDIRMPGMDGIAAAQAILSR--------VPECRIIMLTTFNEEELVAQSIA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +     D   +   +  +     ++       +           +          
Sbjct: 98  AGAHGFLLKDADPEVLAGAVRDVAKGESVLASQVTGPVLEAYRTALTRGQLSAQERQGLS 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE+E L+ I+ G T+ EIA  + I+  TV  +++S+M K A + R   + +A R  
Sbjct: 158 LVTRREMEVLSLIARGATNSEIAAEMVIAETTVKTHVSSLMSKLAARDRVALVLFAQRAG 217

Query: 245 I 245
           I
Sbjct: 218 I 218


>gi|209695582|ref|YP_002263511.1| response regulator [Aliivibrio salmonicida LFI1238]
 gi|208009534|emb|CAQ79826.1| response regulator VarA [Aliivibrio salmonicida LFI1238]
          Length = 214

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E   + +  +      +  +   D                          +
Sbjct: 2   IKVFLVDDHELVRTGIRRILEDVRGIKVVGEADSGEDAVKWCRT---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   +    P          
Sbjct: 47  QADIVLMDMNMPGIGGLEATKKILRFNPDM--------KVIVLTIHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R +  +   ++ L         +          EL+
Sbjct: 99  AGYLTKGAGPDEMVNAIRMVQSGQRYLSPEIAQQMAL--------SQFTPDSENPFKELS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMIMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLDISGDVELTHLAIRHGIL 209


>gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 244

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + +  + E   + +     R D +  +           R+ AL            
Sbjct: 33  MEKIRVFVLDDHEIVRNGLRQTLARHDDIEVVGEAGLAAEALRRIPAL------------ 80

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D+ R +  +  D    +L          +       +   
Sbjct: 81  ---HPHVAVLDGRLPDGSGIDVCREVRSALPDVACLIL--------TSYDDDEALFSAIM 129

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +     ++                   +          
Sbjct: 130 AGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRR-------VLERLRDGPSEDPAMA 182

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y ++ 
Sbjct: 183 TLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYLMKQ 241


>gi|318058792|ref|ZP_07977515.1| two-component system DNA-binding response regulator [Streptomyces
           sp. SA3_actG]
 gi|318075476|ref|ZP_07982808.1| two-component system DNA-binding response regulator [Streptomyces
           sp. SA3_actF]
 gi|333026609|ref|ZP_08454673.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746461|gb|EGJ76902.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 218

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 30/243 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLP--TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           V +VL  +     + V           +  +       +    +  L             
Sbjct: 2   VRVVLVDDHRMFRAGVRAEIDHPGEHRVTVVGEAADADAAVRSVREL------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +     LD  +       +++  A    D    V      L   V     + I     
Sbjct: 49  --MPDVVLLDVHLPGGGGLSVLQRCADLVMDTERPV----RFLALSVSDAAEDVIGVIRA 102

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKD 183
               Y +   +   +   +  +     +           LA +  + F   +      + 
Sbjct: 103 GSRGYVTKAINGTELVAAIHRVNEGDAVFSPR-------LAGFVLDAFSNNTVPPVDEEL 155

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I+ G +  EIA  L IS  TV +++++++RK     R     +A   
Sbjct: 156 DKLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNRHELTRWAAAR 215

Query: 244 NIV 246
            +V
Sbjct: 216 RLV 218


>gi|239996122|ref|ZP_04716646.1| two component LuxR family transcriptional regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 214

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +   + +  +    D    +                    G    LL R +
Sbjct: 2   IKIILADDHDLVRTGIRRILEDVDDFTILAEAKN---------------GEDAVLLCRKN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +      +   V+        P+       +       
Sbjct: 47  APDVVLMDVNMPGIGGLEATKKIV--RMSENTRVICVSMHKESPI------PMQVMDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   +   +   +  +    + + ++    I +         K          EL+
Sbjct: 99  YGFLTKDAEPDEVIRAIHKVAAGQKYVDQEVANSIAI--------GKLLPSSDNPFDELS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+     ++EG    +IA  L I+  TVN Y   + +K    +       A R+ ++
Sbjct: 151 SRELTIAMRLTEGHKVPDIARELSINSKTVNTYRYRMFQKLGVNSDVELTHLAYRHKLI 209


>gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 237

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
              +L  +           ++ +  + +G  +        +   +   +V S++P    R
Sbjct: 5   MEQILYEIEATHSEHEAFGKIASAVKEIGFEYSAYCLQTPWPLSRRKVLVFSNFPEPWQR 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
               +       +L+R  + + PV  +                 G+   Y         +
Sbjct: 65  RYHDARYIDVDPLLRRGRQSYAPVIWSDAVFEGTPQLWEEAQAHGLRYGYSLAAVSNCGV 124

Query: 141 RIGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              + +      + +R+       +  +   A           +    D ELT REVE L
Sbjct: 125 SGMMSMARSHTPLTVRELQQQELKMRWLVNAAHLAITRAVLPKLSPEGDIELTDREVEVL 184

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            W+++GKT+ EI++I+ IS  TVN ++ + + K  T  
Sbjct: 185 KWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNTSN 222


>gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 218

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 13/221 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   ++    +  +     G     L          +D  +      
Sbjct: 4   LLICDDQAVVRDGLSIMLNLAPDLEVIAVASNGREAVQLSATWQPDLILMDLKMPIMNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R        +          L    +                Y       + +   +
Sbjct: 64  EATR--------QISAAQPLVKILVLTTYDDDEWLFEAIRAGAAGYLLKDMAHSDLVSAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +  +    +      Q    ++          LT RE+  L  I+ G T+ 
Sbjct: 116 RGTVSGKAYVDPNVTARL----LSQVATSRNQPPASQLTGRLTERELAVLNLIATGHTNA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L +S  TV N++++I+ K     R+ A   AV + +
Sbjct: 172 SIAEQLRLSEGTVRNHVSTILSKLDVADRTQAALLAVEHGL 212


>gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 242

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 29/246 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q++ +++  +       +      +  +  +   +           L             
Sbjct: 3   QRIRVLIIDDHPLFRQGIRWSLEEAGDMEVVGEAENGQEAIKLAERLV------------ 50

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      ++ R +   E      V+         V+    +       
Sbjct: 51  ---PDVVLVDINLPGLNGLEVARVIKRREPRIGLIVI--------SVYEDDDQLFQAIKV 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
               Y S       +   +  +     +I    + +   +A    + F+       +   
Sbjct: 100 GAAAYSSKDVHPRDLVRMIREVARGKYLINDSVIAKPH-VATRVLHQFRELAATEDERTS 158

Query: 185 ----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  I+ G ++ EIA  L IS  TV N+I SI+ K     R+ A+ YA
Sbjct: 159 ALFAPLTSREIEILDCIARGLSNKEIASQLSISGQTVKNHITSILSKLQVNDRTMAVIYA 218

Query: 241 VRNNIV 246
           ++   +
Sbjct: 219 IQRGWI 224


>gi|253998442|ref|YP_003050505.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200518|ref|YP_004039176.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985121|gb|ACT49978.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439834|gb|ADQ83940.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 214

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S +  L  +   +  +   +                G   + +    
Sbjct: 6   IRVLLVDDHTVVRSGLCRLLEQHSGIKVVAEAES---------------GEQAYQVFGEY 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      + +R +            +    L   +       +       
Sbjct: 51  LPDVTVMDLSMPGMGGLEAMRRILAR--------YRTARVLIFSMHENAAFAMQTLKSGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + T     +   ++ +      I      +I L         ++         +L+
Sbjct: 103 RGYVAKTGSFDELVKAVVEVARGKSYISTSIAQKIAL---------QTVIGDGDLISQLS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E     +EGK ++EIA +L IS+ TV NY   + +K         + +A+++ ++
Sbjct: 154 PREFEVFRLFAEGKNAEEIAEVLKISQKTVANYHTLVKQKLGLSNPVEMVRFAIKHGLI 212


>gi|260774409|ref|ZP_05883323.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14]
 gi|260610536|gb|EEX35741.1| transcriptional regulator UhpA [Vibrio metschnikovii CIP 69.14]
          Length = 209

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S  + L    D +  +                      + FL +   
Sbjct: 2   ITVALVDDHAVVRSGFAQLLNVEDDIQVVGEYGDAQ---------------AAFLALSKK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +    L+  +                 +   ++ +            
Sbjct: 47  PVDVVIMDISMPDESGLSLLARLKTLH--------PHFKAIILSIYDSASFVSKAIDSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S     + +   + ++    R +  D L+ +            S         ELT
Sbjct: 99  SGYLSKRCGPSELVDAIRMVARGHRYLCADALFNL------------SNPQEKNVLMELT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    + +GK + EI  +L +S  TV+ + A+I+ K         I +A+++ ++
Sbjct: 147 KREREIFFLLIQGKDAKEIGQVLFLSYKTVHVHRANILNKLGLSNIVDLIRFAIQHRLL 205


>gi|325697781|gb|EGD39665.1| two component system response regulator [Streptococcus sanguinis
           SK160]
 gi|332358540|gb|EGJ36364.1| two component system response regulator [Streptococcus sanguinis
           SK1056]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +    +  +  +        +++ +               
Sbjct: 2   IKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKLHRV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D I+       +   +      + Y  ++    +    F       +      
Sbjct: 47  -----RPDVILMDIRMPVMDGVLCTKAVKEQYPDVKI---IILTTFDDDEFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  ++  G +I  +   ++  + +  A    +  V      +++
Sbjct: 99  SGYILKGVSTEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  
Sbjct: 159 RTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTG 215


>gi|302865544|ref|YP_003834181.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568403|gb|ADL44605.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 216

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 74/227 (32%), Gaps = 16/227 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             +  L    D L R+  L   V     +  + E   GA    LV     +   +D  + 
Sbjct: 1   MTIDVLIVDDDELIRV-GLRAIVDAQPDLRVVGEAADGAQVPPLVAKLRPRVVLMDVRMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +       R +  +  D        P  L    F                +       A 
Sbjct: 60  AIDGIQATRRLLAASADP-------PRVLVVTTFANDEYVYEALRAGAAGFLLKRARPAE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++     ++    + ++        + +   D    +   LT RE E L  ++ 
Sbjct: 113 VVQAIRVVAAGDSLLFPAAIRQL-------VDTYGRRDGDRLRAARLTEREAEVLRLMAA 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 166 GLSNPEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212


>gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905]
          Length = 203

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 67/224 (29%), Gaps = 34/224 (15%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSD 81
           + R++  +        + +L               G    +LV+        +D  +   
Sbjct: 1   MIRIVIAEDQGMLLGALRSLLSMEEDMEVVGLAKNGEEALMLVKEHQPDICVMDIEMPVK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D    M  S  D           +    F                Y      +  + 
Sbjct: 61  TGLDAAEEMHGSGLD--------CKVIILTTFARPGYFERARKASVRGYLLKDSPIEELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    RI   +       L  +              +  LT RE + LT ++EGK
Sbjct: 113 SAIRTIMDGKRIYAPE-------LVDFVYE--------DDSENPLTERESQVLTLVAEGK 157

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA  L +S  TV NYI++I+ K     R  AIA       
Sbjct: 158 TTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 201


>gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 22/237 (9%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  ++ +    +  L +             T         + + +      L+     
Sbjct: 9   ILLVDDELRFRQGLRTLLSFYS-----ATGTTTFEIVGEAATVDQAL-----TLIHSQRP 58

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  ++     +L+  +  S              L                   + 
Sbjct: 59  ALVLLDLELAQGDGVELLTRLRGSAF--------AGKVLVLSAHQEDDWVFRAMQSGASG 110

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   T   A++   +  +      +  +   +   L  Y A               LT R
Sbjct: 111 YVFKTHLAAQLCAAITTVLRDEIYLPPEVATQFFRLFHYYAGHTVQSRSRI----HLTER 166

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W+  G ++DEIA  L I+  TV  ++++I  K    +R+ AI  A++  +V
Sbjct: 167 EQEVLHWLVRGASNDEIARNLYITIATVKAHLSAIFEKLQVTSRTQAIVAALKLGLV 223


>gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 234

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           S+ + +++              +++ +G  +  L        Q    I+ +++P +    
Sbjct: 6   SEDIQQLLEERNPQRMFEIAVTMSQALGMEYLGLSLHLHIAAQNPQVILYNNYPREWNEH 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIR 141
                      ++    +   P   +                 G+ + +    FD     
Sbjct: 66  YRQGNFLTIDPIVSMCHKTLKPQIWSDELYCEVPHFRESAMRFGITHGWTQSVFDQRHNE 125

Query: 142 IGLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWI 197
             L +   K  I +++      ++  L          +          L+ RE+E L W 
Sbjct: 126 SQLSVCRGKRPIKVKEVYDKASQVMWLCNTLHAALSEHHLEKLSPTPNLSERELEVLKWS 185

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S +TVN +I S++ KT    ++GAIA A    ++
Sbjct: 186 AGGKTAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVAFLRGLL 234


>gi|329938142|ref|ZP_08287593.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302631|gb|EGG46521.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 246

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 80/243 (32%), Gaps = 28/243 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVR 65
           +V +VL  +     + V          A +   + T      +  + E         ++ 
Sbjct: 29  RVRVVLVDDHRMFRTGVQ---------AEIGQTETT-----GVEVVGEAADVDQAVSVIT 74

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   LD  +      +++R  A    D    V      L   V     + I    G
Sbjct: 75  ATRPEVVLLDVHLPGGGGVEVLRRCAPLMADAEQPV----RFLALSVSDAAEDVIGVIRG 130

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
               Y + T   + +   +  +     +           LA +  + F S D     +  
Sbjct: 131 GARGYVTKTITGSDLVASIFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDL 183

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A   
Sbjct: 184 DRLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATAR 243

Query: 244 NIV 246
            +V
Sbjct: 244 RLV 246


>gi|300787361|ref|YP_003767652.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796875|gb|ADJ47250.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 65/244 (26%), Gaps = 28/244 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +       ++ L   +D LA                      G     LVR  
Sbjct: 3   VRVLLVDDQPLMLVGLAILIGDTDDLAVAGEAGD---------------GREALRLVREL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R                   L    F              
Sbjct: 48  RPDVVVMDIRMPGMDGIEATRRATAEPHPP--------KVLVLTTFDDDEYVYGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186
           + +   +  +  I   + ++     +I       +    A          D     D  L
Sbjct: 100 SGFLLKSMALNAILDAIRVVAAGDALIAPSVTRRLIADFAGTAGPAAPEPDTEPAADSGL 159

Query: 187 ----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               T RE E L  + +G ++ EIA  L IS  T   ++A +  K   + R      A  
Sbjct: 160 LAEITDREREVLALVGQGLSNTEIAERLVISAATAKTHVARLFAKLEARDRVHLAIIAFE 219

Query: 243 NNIV 246
             +V
Sbjct: 220 AGLV 223


>gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 239

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 80/229 (34%), Gaps = 16/229 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           DL+  +                T+ +   +    R         ++ + + +P   ++  
Sbjct: 12  DLIEPLRRSTTASELRAAFVRATKSISDCYIASGRVKGGAPVNAETALVT-YPDAWLKHY 70

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRYCSLTFDVARI 140
              +       +      + P      ++I+             G+              
Sbjct: 71  HERKYLDIDPTIVNAGRSYVPYRWEALQDISVKQRQMFLDIAETGIKGGITMSLHTPD-- 128

Query: 141 RIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVECLTWI 197
           R   +  F   + +  DR L  +G + +               G     + RE ECL W+
Sbjct: 129 RAAFVTSFAFTKAVSEDRDLVALGFINSQYYETLSKLSEAELPGPVPTFSRREKECLLWV 188

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT+ +I+VILGIS NT+N Y+ +++ K     R  A+  A+  N++
Sbjct: 189 SRGKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLI 237


>gi|157150357|ref|YP_001451161.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075151|gb|ABV09834.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +    +  +  +        +++ +               
Sbjct: 2   IKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKLHRV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D I+       +   +      + Y  ++    +    F       +      
Sbjct: 47  -----RPDVILMDIRMPVMDGVLCTKAVKEQYPDVKI---IILTTFDDDEFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  ++  G +I  +   ++  + +  A    +  V      +++
Sbjct: 99  SGYILKGVSTEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENVEDMS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  
Sbjct: 159 RTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTG 215


>gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
 gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp.
           TM1035]
          Length = 224

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 63/217 (29%), Gaps = 19/217 (8%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
              +  L       H      +    Q         +  D        +  +    L + 
Sbjct: 8   RQFLDDLRNRFELDHVAYAGMNPISGQSHG---HMTYGADWTSHYLQHKYYEIDPTLLKA 64

Query: 106 TELFCPVFHTLPE---------NITPPAGMD-NRYCSLTFDVARIRIGLML----LFPKG 151
                PV     E               G+                 GL +       + 
Sbjct: 65  RHSIAPVDWNRLERGAEFQTIFQAARDFGISDRGLTIPIHGPYGDVGGLSINRDCSEREW 124

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVI 209
           ++++   +  +   A +  +M    D          L+ RE+E L W + GK+  +I  I
Sbjct: 125 QLLISGIIGNLQAAAVHMHDMVIQSDPLTRMLNTPSLSTREIEILQWTAAGKSQQDIGDI 184

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++ S  +K    T   AI  A+   ++
Sbjct: 185 LSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221


>gi|330470066|ref|YP_004407809.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
 gi|328813037|gb|AEB47209.1| regulatory protein LuxR [Verrucosispora maris AB-18-032]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 67/242 (27%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q++ + L  +     + V               L   V        + E V        
Sbjct: 16  AQRLRVFLVDDHAMFRAGVR------------AELGTHVEVVGEASTVAEAV-------- 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D ++      D      L    + +  ++        V     + I    
Sbjct: 56  --SRIAATEPDVVLLDVHMPDGGGRAVLEAMRRSHPQVRFL---ALSVSDAAEDVIGLIR 110

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + T     +   +  +     +        +               V   +  
Sbjct: 111 AGARGYVTKTISPDELAAAIRRVADGDAVFSP----RLAGFVLDAFAARPDAPVADPELD 166

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G    EIA  L IS  TV  ++++++RK     R     +A    
Sbjct: 167 QLTNREREVLRLLARGYAYKEIARELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRR 226

Query: 245 IV 246
           +V
Sbjct: 227 LV 228


>gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 237

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 18/232 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDS 76
            R +    +    D +     L   +     +  + E   G S   L          +D 
Sbjct: 17  ARPAKAISVLLVDDHVLFRQALRHLLEAEPDIRVIGEAGDGRSAQQLAERFHPDVILMDI 76

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +           +     +   +F      I       + Y     +
Sbjct: 77  SMPGVDGVTATRDLKA--------GIPNTKIIILTMFAEDGHVIRAIRAGADAYLLKNSE 128

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECL 194
            +++   +  +     +I          LA    N F+       ++    LT RE++ L
Sbjct: 129 SSKVIDAIRAVARGESVIEP-------QLATKLLNEFRRISEFREEETVAGLTEREIQLL 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++ EIA  L ++ +TV N ++ +  K   K R+ A  YA+ + ++
Sbjct: 182 RLVASGMSNKEIAAELSLAESTVKNRLSLLFEKLDVKDRTQAAIYALSHGLI 233


>gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 21/230 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   +       +  AR++              L+E +   H              D 
Sbjct: 15  PVRVLLLEDDTPLRERFARILGDWPGGELVAACATLSEALDRLH-----RQPVDLLMADL 69

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + ++ +      +   ++                 +         Y     D
Sbjct: 70  NLPDGHGIEAIQLLRRL-YPEADAMVISAL-------ADDETVLGAIEAGAVGYLLKDAD 121

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  L      I       +                      ELT RE E L  
Sbjct: 122 SLELVEAIQELRAGRSPISSSIARILV--------RRMGGSTPATPTPELTPRETEILRG 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G T  E+A  LGISR+TV  +I +I RK A   RS A+  A +  ++
Sbjct: 174 IAKGFTYTELAEWLGISRHTVPVHIKNIYRKLAANNRSEAVYEASKRGLI 223


>gi|311745162|ref|ZP_07718947.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
 gi|126577683|gb|EAZ81903.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
          Length = 220

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 72/245 (29%), Gaps = 28/245 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +    IVL  + E     +  L         +                    G     ++
Sbjct: 1   MNPTQIVLADDHELVRDGIKSLLENESGFQVIDEASD---------------GIEALKVI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +    ++VR +        Y  +++          +    +    
Sbjct: 46  SKRQPDLLIVDIRMPNMNGIEVVRKLTAE-----YPEIKKLVLSM---HDSEEYVLESIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWG 181
              + Y       +     L  +   G+    D      ++  +     K     +    
Sbjct: 98  AGADGYLLKGSSKSEFLKALNSIKDGGKYFSGDV--SAIIINNFVGGTPKPKQKKEPVSE 155

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE + L  I +GK ++EIA  L IS+ T   +  ++M+K   K        + 
Sbjct: 156 ELAALTNREKQILDLILKGKGNNEIADELKISKRTAEVHRFNLMKKLNVKNLVELTNKSK 215

Query: 242 RNNIV 246
             +++
Sbjct: 216 ELHLI 220


>gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
 gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 115-1]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAKEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|91227214|ref|ZP_01261673.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967094|ref|ZP_06181162.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|91188742|gb|EAS75030.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269828353|gb|EEZ82619.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
          Length = 212

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 32/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++V+  + +               +AR+  L+  +         T   G     + + 
Sbjct: 4   PISVVIVDDHQVVL---------DGFMARL-ELEPDIEVVG-----TASNGLEAIEVAKH 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +  +              L   +       +      
Sbjct: 49  LQPDVILMDISMPIMNGIEATGVIKEAR--------PESKILMLTMHDNREYIMKVMQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        ++   +  +              +           +       K   L
Sbjct: 101 AVGYMLKEISAEKMVQAIKTVNQGSTYFCESVTQTL---------FTQEVVPATQKTNPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE   L  +++G +S +IA +L IS  TV  +  +I  K    + +    YA    +
Sbjct: 152 SRREEAVLKLVAQGNSSKKIATLLNISYRTVETHRHNIKHKLDLHSTAELAKYAFETGL 210


>gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
 gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis
           ATCC 14580]
 gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580]
 gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2]
          Length = 212

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + L  +I  +                G +   L          +D  + 
Sbjct: 4   VLIVDDHLVVREGLKLLIETNDHYIIIGEAEN-----GKAAVRLADELKPDIILMDLYMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + ++ +                 +    ++     I         Y         
Sbjct: 59  EMSGLEAIKLIKEKHDIPI---------IILTTYNEDHLMIEGIELGAKGYLLKDTSSET 109

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        ++  D L  +  +                 D +LT +EV  L  I++
Sbjct: 110 LFHTMDAAIRGNVLLQPDILKRLQEIQL-------ERMKKQSSDTQLTEKEVIVLKAIAK 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S  IA  LG+S  TV + + SI  K    +R+ A+  A++  ++
Sbjct: 163 GLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVL 209


>gi|39996395|ref|NP_952346.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983275|gb|AAR34669.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 216

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +     +  L +    +  +   D   + T  +  L               
Sbjct: 3   IRVVIVDDHKIMREGLKSLLSMEKDIQVVGEADNGRAATQCVKDL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +A       Y  ++                    +   
Sbjct: 48  DPDIVLMDLTMPEMNGIDATRRIAAD-----YPSVRVLALSM---HSDRRFIEEALSAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +      +       +  +  Y     +           LT
Sbjct: 100 QGFLLKDCAFDELVNAIHEVVADRFYLSPRITGVV--IKDYLGRRGRPESA---SSIRLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK + E+A  L +S  TV +    IMRK  T + +    +A+R  +
Sbjct: 155 PREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADLTKFAIREGL 212


>gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 33/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L  +D      +  +  +S +   +                    G     L   
Sbjct: 4   KTRVLLIEDDPVFRVGLRVIFEQSGVAELVGEA---------------GEGEIALALCLQ 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +             ++   + +  ++             P         
Sbjct: 49  MQPDVVLLDLGLPGAMGA----REIVTSLKERHPGIKIL---ALTSHADGPSVQQLLQAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + YC    +  ++   ++ +                      A   +S      +D++L
Sbjct: 102 IDGYCVKGIEPEQLLQAILQVRSGHVWWD-----------GRVAAYLRSGPEPERRDYQL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ++ G ++ +I   L IS  TV  ++ +I+RK   + R+ A   A++  ++
Sbjct: 151 TPRERQVLGLLANGLSNQQIGRQLFISVGTVQVHVHTILRKLGARDRTQAAILALQEGLM 210


>gi|297161212|gb|ADI10924.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 9/224 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V     M  + E   GA    + R        +D  +      
Sbjct: 5   VLLADDQALLRSAFRVLVDSEPDMEVVGEASDGAEAVEIARDRGADVVLMDIRMPGTDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +           L+    +    F      +       + +     +   +   +
Sbjct: 65  AATRMITQ------DPRLEDVRVVMLTTFEVDEYVVESLRAGASGFLGKGAEPDELLAAI 118

Query: 145 MLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +      ++       +    LA       +S      +   LTGRE E L  ++ G +
Sbjct: 119 RIAAAGEALLSPVATKGLIAKFLAQGGGRDGESGAYDAARLDALTGREREVLVQVAGGLS 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +DEIA  L +S  TV  ++   M K   + R+  +  +    +V
Sbjct: 179 NDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVISYETGLV 222


>gi|239502065|ref|ZP_04661375.1| response regulator [Acinetobacter baumannii AB900]
          Length = 211

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     +VR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDHADVEVIGQAES---------------GEEAIAIVRQQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  +              +        P          
Sbjct: 47  HPQVVLLDVNMPGIGGVETTRRLLQTA--------PETKVIAVSGLAEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPIAEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I    ++ EIA  L +S  TVN Y   I  K    +       A+R  ++
Sbjct: 151 EREMQVAMMIVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLI 209


>gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 207

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L  + D L  +            +  L               
Sbjct: 2   IRILLVDDHPVVRLGLRALFDQEDDLTVVGEAGTPEEAVAAVREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++             +++  +               + T  + I       
Sbjct: 47  -----QPDLVLMDLQLGRAGNGADVTQAIRSGPDAPPVL--ILTNYDTDGDIIRSIEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         + + +         +          +A+      ++          L+
Sbjct: 100 SGYLLKGAPPDELLLAVRSAAAGESALAP-------PIASRLLERLRT------PQTSLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G+++ EIA  L I+  TV +++  I  K    +R+ A++ A    I+
Sbjct: 147 PREIEVLERVAAGRSNGEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGIL 205


>gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 214

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  + +     +       D +  +           R   L              
Sbjct: 6   RIRVLLVDDHQVVRRGLRTFLQVQDDIEVVGEASDGEEGVARAEEL-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +R +   +             L    F      +      
Sbjct: 52  -RPDVVLMDVKMPGLDGIEALRTLRGLDNP--------ARVLIVTSFTEKRTVVPALRAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +   +  +     ++  +    +           +      G+   L
Sbjct: 103 AAGYVYKDVDPEALARAIRSVHSGHVLLQPEVALALL---------SQDEGGGQGRGGSL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I++G+++ EIA  L +S  TV  ++++I+ K     R+ A  +AVR+ I
Sbjct: 154 TEREREVLALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212


>gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99036997|gb|ABF63609.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 26/230 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P  ++ +  ++     +     + +     G          +     +D 
Sbjct: 23  PIRVLIVDDHPMVAEGIQSILESYGDIEVVGAVSS-----GREAIARAEALVPDVILMDL 77

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +           ++           +     T  +     Y      
Sbjct: 78  NMPDVGGLSATEIIQE-----RCPEIRVLILSM---HDSPEYITTALSHGAVGYVLKDVQ 129

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I+  +  +    + +       +                       LTGRE   L  
Sbjct: 130 PEEIKTAIDAVMRGEQYLCTGAAGSL-------------SPQSQTSREALTGREQTILLE 176

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 177 LAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 226


>gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a]
          Length = 235

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 16/230 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL              R+      +   +       +F E+K   ++ +++P    R
Sbjct: 5   QDDLLMITDLKLSESQIVKRIQEAATMLEFEYCAYGLQVIFPEEK--VVMFNNYPRQWQR 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       ++ +  +   P+                   AG+   +   + + A  
Sbjct: 63  RYDTENYLAIDPIVAQGRQSQTPIIWADSVSREAPIFWEEARAAGLKVGWSQSSINAAGA 122

Query: 141 RIGLMLLFPKGRIILRDR------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              L L      I  ++       +  +  +A    +   S  +    + +LT RE E L
Sbjct: 123 ASMLSLSRSSQPITRQELDANEIKMRWLVNVAHLALSNRISTRLANPYEVKLTSREKEVL 182

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            W   GKTS EI+ +L IS NTVN +I + + K +   ++ A+  A    
Sbjct: 183 KWTGSGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQAFLTG 232


>gi|196233724|ref|ZP_03132564.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222238|gb|EDY16768.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 208

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 67/233 (28%), Gaps = 30/233 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I +  +D      ++ L  R++ L  +                              
Sbjct: 2   PIRISIVEDDRITRESLAALIARAENLECLDTYANAEEALHH---------------APE 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     +D  +      + V  +             R   L    +             
Sbjct: 47  RLPDVLLVDINLPGRSGIECVAALKT--------AHPRLNVLMLTTYDDTENIFASLRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       A I   +  +   G  +          +A    + F        +   L
Sbjct: 99  ASGYLLKRTPSAEIITAIREVHAGGSPMS-------MHIARKVVSHFHLARPANPEMQTL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE E LT ++ G    EIA  LGIS +TV  ++ +I  K   ++R+ A+  
Sbjct: 152 TPREHEILTLLARGLHYKEIADQLGISTSTVRAHLHTIYGKLHVQSRTEAVVK 204


>gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 223

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +D      +S   T+                       T   G     L   + 
Sbjct: 3   RVLVVDDDPLSLKVLSRHLTQHGY-----------------RVCTGASGVEGLRLFAQEQ 45

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D ++     F+  R +      +    +   +         L + +       +
Sbjct: 46  PDVVVSDVVMPEMDGFEFCRQLRQQRGGELVPFIFLSSRS------ELDDRVQGYEWGAD 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y    F+   +   +     + R    + L    L+        ++       D  LT 
Sbjct: 100 DYIIKPFEPLELVAKIEAQIERARRTQLEILR---LIQQQTQAKAEAAPRPTLADLPLTP 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E      +  G T+ +I   L IS  TV  ++ +I+ K + + RS  + +A     +
Sbjct: 157 AEERVFREVIRGLTNKQIGEKLFISPRTVQTHLTNILSKLSLENRSQLVRFAYERGYI 214


>gi|318061446|ref|ZP_07980167.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318077421|ref|ZP_07984753.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 229

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 15/236 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQ 70
           + R+   R      L    D       L    +       + E  G              
Sbjct: 1   MPRDSVLRAPAPLTLLIADDHPVVRDGLRGMFAADAGFRVVGEAAGGREAVDRTLALDPD 60

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +        +  +             R   L    + +  + +         Y
Sbjct: 61  VVLMDLRMPEGGGVAAIAALRARG--------ARARVLVLTTYDSDTDTLPAIEAGATGY 112

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +        ++       +        ++             L+ RE
Sbjct: 113 LLKDAPREELFAAVRATADGRSVLAPAVASRL------VTSLRAPGADETPPRTPLSARE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++ EIA  L +S  TV  ++  +  K     R+ A+A      I+
Sbjct: 167 REVLALVARGTSNREIARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 222


>gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 216

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 63/222 (28%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     M    E   GA    L R +      +D  +      
Sbjct: 5   ILIADDHAIVRQGLRALIDKEEDMMVGAEAGTGAEAIRLTRQERPDVIVMDISMPDVNGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +                 L   +       +       N Y       + +   +
Sbjct: 65  DATRGITAE--------FPEVKVLALSMESDRRFVVEVLKAGANGYVLKDAAFSELATAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
             +      +       +           +         +E L+ RE E L  I++G  +
Sbjct: 117 RAVAAGETYLPPRVTTLL------IKEYLQRIPDEVPATYENLSAREREILQLIADGSNA 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA   G+S  TV N   SIM+K    + +    YAVR  +
Sbjct: 171 KEIAFAFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212


>gi|182437703|ref|YP_001825422.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778339|ref|ZP_08237604.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466219|dbj|BAG20739.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658672|gb|EGE43518.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 221

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 67/226 (29%), Gaps = 10/226 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D   +       +     M  + E   G     LV         +D  +   
Sbjct: 1   MTTVLIADDQPMQRFGSRMLLESQDDMTVVGEAANGNEAVGLVARHRPDVVLMDIRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +  S              L    F              + +         + 
Sbjct: 61  DGIEATRRIIASG--------AGTRILIVTTFDLDEYAYDGLRAGASGFLVKDALPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            G+  +     ++       +      +      +      +   LT RE E LT I +G
Sbjct: 113 AGIRAVAAGDAVVAPTLTRRLLDAYVHHLPATPGAPAAADPRITALTEREREILTVIGQG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L ++ +TV  ++  I+ KT  + R  A+  A    +V
Sbjct: 173 WSNSEIAARLHLAESTVKTHVTRILAKTGARDRVQAVILAYDTRLV 218


>gi|150019634|ref|YP_001311888.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906099|gb|ABR36932.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 218

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 20/226 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTE-----------YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           + R+I  +           + E             G   + L +  +     +D  +   
Sbjct: 1   MTRVIIAEDQKLLRESFKNIIENNSDIKVVACATNGNEAYDLCKEYMPDVVLMDLSMPIC 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  + +           L     L     +   +     +   + Y         + 
Sbjct: 61  NGTEATKLIKAE--------LPSVKVLVLTASNDKSDVTDAISNGADGYILKDISTEELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           + +  +     II +D L  + L L        K      G +  LT RE++ ++ I +G
Sbjct: 113 LSIKSISLGLGIITKDILSPMILNLRKENKKAKKKIIDINGINISLTERELKIVSMIVDG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K + EIA  L I+  TV N I  I+ K + + R+    YAV+N +V
Sbjct: 173 KDNKEIASSLFIAEGTVKNIITEIISKLSLRDRTQLAVYAVKNGLV 218


>gi|297538080|ref|YP_003673849.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257427|gb|ADI29272.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 212

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  +N++L  +          L      +  +   +       R                
Sbjct: 1   MSLINVMLVDDHAVVRMGFKMLLESDSDIKVIAEAESGEQAIQRFVEF------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + +  +   +      VL    +   P             
Sbjct: 49  ---KPHVVVMDITMPGIGGLEAIERILAKDSSAKILVLSAHEDSVHP--------KRVLN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   + ++    + +      ++           +          
Sbjct: 98  AGAMGYLTKRSAAEEMIKAIRVVATGKKYLEASVAQQMA---------IQQLSGDQNPVD 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E    +++GKT++EIA  L +S  TV  ++ +I +K      +     A+R+ 
Sbjct: 149 VLSPREFEVFMALAKGKTTNEIAETLFLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSG 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|170019748|ref|YP_001724702.1| response regulator [Escherichia coli ATCC 8739]
 gi|169754676|gb|ACA77375.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
          Length = 218

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 71/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +    C         A               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              +   V    P          
Sbjct: 47  AVDVVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S +     +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKSAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|123442872|ref|YP_001006848.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122089833|emb|CAL12689.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 209

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 28/229 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--LDSI 77
            + +          A+++ L+  +       +  E                     +D  
Sbjct: 4   VALIDDHIVVRSGFAQLLSLEKDIRIIGEYGSAAEAW-------ANLPNTDVHVAVMDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +           +     +   ++ T     +      + Y +     
Sbjct: 57  MPDESGLSLLKRLRQK--------MPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +   G  +  D L  +           +       +   LT RE E    +
Sbjct: 109 DELVQALRTVHGGGLYLCADALRAL-----------RHMPQQPQQLAILTPREKEVFQLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G +   IA  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 158 INGISVKSIAEQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|330446242|ref|ZP_08309894.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490433|dbj|GAA04391.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  L      +  +              +               +
Sbjct: 2   INVFLVDDHELVRTGIRRLLEDVRGIKVVGEAVSGEEAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  HADIILMDMNMPGIGGLEATRKILRFNPD--------VKIIVLTIHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L         +          EL+
Sbjct: 99  AGYLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMAL--------SQFASNSENPFKELS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHGML 209


>gi|313201365|ref|YP_004040023.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|312440681|gb|ADQ84787.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 213

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 65/241 (26%), Gaps = 32/241 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  +          L   +  +  +   +                G     L  
Sbjct: 3   EPIKVMLVDDHAVVRMGFKMLLESASDIKVIAEAEN---------------GEKGIKLYM 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      + +  +   +             L                 
Sbjct: 48  EHHPDVVVMDITMPGIGGLEAIERIMAKDSS--------AKVLVLSAHEDSVHPKRVLNA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y +       +   +  +    R +      ++           +           
Sbjct: 100 GAMGYLTKRSAAEELIKAIRTVAGNKRYLEATVAQQMA---------IQQLSGEANPVDV 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    +++GKT+++IA  L +S  TV  ++ +I +K      +     A+R+ +
Sbjct: 151 LSDREFEVFIALAKGKTTNDIAETLSLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 222

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 14/221 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHF-----LLVRWDLFQEQKLDSIVSSDWPF 84
            D   R++ +D    W   +    E  G +       +     +    +   ++      
Sbjct: 10  DDAAIRVLVVDDHPMWRDAVARDLEARGFTVAGTADSVAAAGRIAGAVQPTVVLMDMSLP 69

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D       +   ++     +   L         + +         Y   +     +   +
Sbjct: 70  DGDGAAGTTLVLQHAP---QAAVLILSASDEREDVVEAVKAGACGYLVKSASAEELVAAV 126

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +        +       A   +          +LT RE E L  +++G ++ 
Sbjct: 127 RATAAHQPVFTPGLAGLVLGEFRRMAAEPEPAGP------QLTPRETEVLRLVAKGLSAK 180

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L +S  TV N++ + +RK     R     YA+ N +
Sbjct: 181 QIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENGL 221


>gi|295395258|ref|ZP_06805465.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971893|gb|EFG47761.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 226

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 74/245 (30%), Gaps = 25/245 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E   + + L  ++   T+ ++ +      ++ +                    GA    
Sbjct: 1   MEAAMITVGLADDEPLFTAGLAMILDAQPDMSVLWQAID---------------GADAIR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      LD  + +       + +  +          +   +    F T    +T 
Sbjct: 46  QHNHEAPDILLLDIQMPTLDGLATTQHLITAGT--------QSKIIILTTFDTDEYVLTA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +         +   +  +     +I       +      +     +       
Sbjct: 98  IESGASGFLVKNTAPNDVVAAIRTVHDGDAVISPGPTRRLFTTFRKRPGGPAACPSPTDS 157

Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE + L  I+ G+T+ EI   L ++  T+  +I ++  KT  + R   + +A
Sbjct: 158 RLADELTPRERDILALIARGRTNQEICDELWLTMPTIKTHIGNLRAKTQARDRVQLVLFA 217

Query: 241 VRNNI 245
           +R  I
Sbjct: 218 LRVGI 222


>gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     M  + E   GA    + R        +D  +      
Sbjct: 5   VLIVDDHTIVRQGLRVLIDKEQDMEVIAEAATGAEAIRIAREKRPDVTVMDITMPDLNGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +             +   L   +       +       N Y       A +   +
Sbjct: 65  DATRAIVAEW--------PQARVLALSMESDRRFVVEVLKAGANGYVLKDSAFAELATAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
             +      +       +           +         +E L+ RE E L  I++GK +
Sbjct: 117 RAVASGETYLPSRVTTLL------IKEYLQRIPDEVPATYENLSLREREILQLIADGKNA 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA   G+S  TV N   SIM+K    + +    YAVR  +
Sbjct: 171 KEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212


>gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1]
 gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1]
          Length = 219

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 70/242 (28%), Gaps = 28/242 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     + L  +     S V     R   +  +            + A +          
Sbjct: 5   ETPPYRVFLVDDHAVFRSGVRAELGREADMEVVGEAGGVAEAVAGINATS---------- 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +       ++R +                 L   V     + I   
Sbjct: 55  -----PHVVLLDVHMPDGGGVAVLRGIESGPVC-----------LALSVSDAAEDVIAVI 98

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y + T   A +  G+  +     +        +  L ++             + 
Sbjct: 99  RAGARGYVTKTISGAELADGVRRVAGGDAVFSPRLAGFV--LDSFTGRSNAPEPQLDPEL 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R 
Sbjct: 157 DSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRR 216

Query: 244 NI 245
            I
Sbjct: 217 RI 218


>gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 211

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 69/238 (28%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S V    +R   L  +            + A                
Sbjct: 1   MRVFLVDDHAVFRSGVRAELSREADLEVVGEAGGVAEAIAGIKAT--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++  +                 L   V     + I       
Sbjct: 46  EPDVVLLDVHMPDGGGVAVLSGIEDGPVC-----------LALSVSDAAEDVIAVIRAGA 94

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + T   A +  G+  +     +        +  L ++             +   LT
Sbjct: 95  RGYVTKTISGAELADGIRRVAGGDAVFSPRLAGFV--LDSFTGRSPVPEPPLDPELDSLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A R  I
Sbjct: 153 PRELEVLRLLARGYTYREIAETLFISVKTVETHASNVLRKTQQSNRNALTRWAHRRRI 210


>gi|312172019|emb|CBX80276.1| putative 2-component transcriptional regulator UvrY [Erwinia
           amylovora ATCC BAA-2158]
          Length = 219

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +   +C                          
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGIKVVGEANCGEDAVKWCRT---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++       +    A  +  +Y         +   +    P          
Sbjct: 46  ----HRTDVVLMDMNMPGIGGLEATRKIIRYAP---DCKIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMAL-------SQLEPQKSESPFCCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K +          A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLSISGDVELTHLAIRHGL 209


>gi|298491629|ref|YP_003721806.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233547|gb|ADI64683.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 238

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 76/256 (29%), Gaps = 33/256 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ IVL  + +     +     +   +  +            +  L            
Sbjct: 1   MSKIRIVLIEDHDLTRVGIRTALLQKKDIDVVGEAVNAAEGLKMLKKL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R +  + +D+          L   +       +   A
Sbjct: 49  ---RPDIAVVDIGLPDKDGIELTRELKATAEDED----LDTKVLILTLHDNREAVLAAFA 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + YC        +   + + +     I       +   A       +        D 
Sbjct: 102 AGADSYCMKDIRFDNLLDAVRVTYNGNAWIDPAIARIVLQQAQQNPIKPEPISFREHTDI 161

Query: 184 -------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                        + LT RE+E L  I EG ++  IA  L I+  TV  ++ +I+ K   
Sbjct: 162 DAESAENEQPIEPYSLTERELEVLQLIVEGYSNAVIAQRLFITIGTVKTHVRNILNKLCA 221

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A   A+R+ IV
Sbjct: 222 DDRTQAAVRALRSGIV 237


>gi|254422719|ref|ZP_05036437.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190208|gb|EDX85172.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 235

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 80/255 (31%), Gaps = 35/255 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I+++++ L  + +     +     ++ L  R +    +              G     L+
Sbjct: 2   IEEISVALVEDHDLTRMGLRAAFRQAGL--RFLGEADS--------------GNKGLSLI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      ++++ +     D           L   +  +    +   A
Sbjct: 46  AEMRPDVAVVDVGLPDIDGIEMIQRLKKENPDVT------TKILMLTMHDSEKAVLAAFA 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDV 178
              + YC+   D + +   +         I       +              N       
Sbjct: 100 AGADSYCTKEIDTSDLISAIKETQAGNSWIDPTIASLVLSQVKPATAVGESFNTKTVEIR 159

Query: 179 HWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
               ++E       LT RE+E L  I  G ++ +IA  L ++  TV  ++ +I+ K    
Sbjct: 160 AVDPEYEQIIEAYPLTERELEILECIVSGCSNAQIAEKLFVTVGTVKTHVRNILNKLGAS 219

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A+R  ++
Sbjct: 220 DRTQAAVRALRAGLI 234


>gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 247

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 22/240 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFL-LVRWDL---FQEQKL 74
           ++ V+ L    D       +   +S    +  + E   G      L + D         +
Sbjct: 4   STVVAKLLIVDDHPLFRQGVHWALSHESGIQIVGETANGEETLRWLAQVDPSLEPNVVLV 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +L R +   +      V          +                 Y S  
Sbjct: 64  DLNLPGMSGLELTRQI-RRQYASIAVV-------MLSMHENDEAAFNALRAGAAAYRSKD 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--------FEL 186
              A +   +  +     +I  D L E   +A    + F++                  L
Sbjct: 116 IKPAALADIIRRVARGEYVIN-DVLMEEPRIAGRILSQFRNLPEVQTLADDLGIQIFTPL 174

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I+ G ++ EIA  LGIS  TV N+I+SI+RK +   R+ A+ +A+R   +
Sbjct: 175 SEREIEVLERIAAGSSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 234


>gi|297538580|ref|YP_003674349.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257927|gb|ADI29772.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 212

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 29/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
             ++++  +       VS + +       +                    GA   LL   
Sbjct: 4   PTSVIIIDDHALFRRGVSQMISADPAFVVIGEAAS---------------GAEGLLLAEQ 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +  +  ++ +           +   V     + +      
Sbjct: 49  LKPDLALIDLNMKGMNGIETLSRIKEAKLESKC--------IVLTVSDAEADLLEALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     +   +   L        ++       +         +         ++  L
Sbjct: 101 ADGYLLKDMEPEDLCDNLKKAMSGVTVLHESLTEILK------NALISPSLSRSEEEVSL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE E L  ++ G  +  IA  LGIS  TV  +I  ++ K    +R  A  +A R 
Sbjct: 155 TEREREILECLANGLNNKTIARSLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRK 211


>gi|21221661|ref|NP_627440.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|1293660|gb|AAB08053.1| AbsA2 [Streptomyces coelicolor]
 gi|4490635|emb|CAB38597.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
          Length = 222

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  + T    +  +                    G     L R  
Sbjct: 2   IRVLLADDETIIRAGVRSILTTEPGIEVVAEASD---------------GREAVELARKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           M  +  D           +    F              
Sbjct: 47  RPDVALLDIRMPEMDGLTAAGEMRTTNPD--------TAVVVLTTFGEDRYIERALDQGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     D   +  G+  +   G  +       +        +          +   LT
Sbjct: 99  AGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSG--ERTTLLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ EIA  L +   T+  Y+++I  +   + R  A   A    +V
Sbjct: 157 KREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAGLV 215


>gi|256423166|ref|YP_003123819.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038074|gb|ACU61618.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 215

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 67/218 (30%), Gaps = 12/218 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK------LDSIVSSDWPFDLVR 88
           R+   D   +    +  L +   +   + V  D             D ++      ++  
Sbjct: 4   RVAIFDDNKNIRNSIRLLLDTAPSIEVVGVFSDARNCVNDVLNCSADIVLMDIEMPEISG 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A+ +  K    +Q   +    VF              + Y        R+   +  L 
Sbjct: 64  IEAIKQLKKEVPHVQILIQ---TVFEDDDRVFDSICAGASGYILKNHLNTRLIDAIQELQ 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +          +                  + LT RE E LT I  G++   IA 
Sbjct: 121 TGGSPMSPSIARR---VLNLLQKSAVQKPEPNNDSYNLTAREKEVLTCIVNGQSYKMIAS 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV +++  I  K    + + A+A A+   IV
Sbjct: 178 DLNISYETVRSHVKKIYEKLHVASLTEAVALAINQRIV 215


>gi|85711562|ref|ZP_01042620.1| two-component system regulatory protein [Idiomarina baltica OS145]
 gi|85694714|gb|EAQ32654.1| two-component system regulatory protein [Idiomarina baltica OS145]
          Length = 212

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L T SD L               + ++               
Sbjct: 2   IRVLLVDDQTLIRQGLESLLTMSDALTICGQASDGEEAINVIDSV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +          +   L    F      I   A   
Sbjct: 47  QPDVVLMDIRMPRMDGIEATRHLRQTH--------PQLPILILTTFDDHELIIKAIAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  L   G  +       I     +  N      +       LT
Sbjct: 99  KGYLLKDVSLETLVDAIRALVDGGTWLQPAITERIVNSLTHNTNKTAPVLIEP-----LT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+  L  ++ G ++ EIA  L  S  T+ N ++SIM K     R+ A+  A+   ++
Sbjct: 154 DKELAVLRLMAAGLSNQEIADSLFKSTGTIKNQVSSIMAKLGVHDRTRAVLKAIDLGVL 212


>gi|323977906|gb|EGB72992.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 218

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +    C         +               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              +   V    P          
Sbjct: 47  AVDVVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|206578416|ref|YP_002237711.1| response regulator UvrY [Klebsiella pneumoniae 342]
 gi|290508771|ref|ZP_06548142.1| response regulator [Klebsiella sp. 1_1_55]
 gi|206567474|gb|ACI09250.1| response regulator UvrY [Klebsiella pneumoniae 342]
 gi|289778165|gb|EFD86162.1| response regulator [Klebsiella sp. 1_1_55]
          Length = 218

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                        A     G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRIL---------------EDIKGIKVAGEACCGEDAVKWCRAN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S        +     +   V    P          
Sbjct: 47  SADVVLMDMNMPGIGGLEATRKIARS--------VAGTKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRCVASGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|297567226|ref|YP_003686198.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851675|gb|ADH64690.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 212

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 69/241 (28%), Gaps = 34/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +V ++L  +       +         +  +   +       ++  L             
Sbjct: 5   PKVRVLLVDDHGVVRQGMKLYLAADSSIEVVGEANNGQEALTQVEKL------------- 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++        +R +           ++              + +     
Sbjct: 52  --EPNVVIMDLLMPVMDGISAIREIKKRF-----PEVEIVAVTS---VLEDKKVVDAVQA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     D A +   +         +  +    +           +       ++  
Sbjct: 102 GAMGYLLKDTDAAALSEAIHAASRGEVRLHPEAAKRL----------MREVRTPEMRES- 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G ++  IA    +   TV  +++SI+ K    +R+ A  +A++  +
Sbjct: 151 LTPRETEILKLLAQGHSNKHIARETKVEERTVKAHVSSILAKLGLSSRTQAALFALKEGL 210

Query: 246 V 246
           V
Sbjct: 211 V 211


>gi|323700520|ref|ZP_08112432.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. ND132]
 gi|323460452|gb|EGB16317.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans ND132]
          Length = 216

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 15/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++    +  + E   GA    L R        +D  +    
Sbjct: 5   TTLLIVDDHRVVIAGIRSLLAPKADIEIVGEATDGAEAVALSRELAPDIVIMDISMPEMD 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +    +          V  R   +   +       +       + +       A +  
Sbjct: 65  GVEATGLIRQ--------VSPRTRIIIYTMHSDQRFILELFKAGISGHVLKEGPPADLCA 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +              +         +             L+ RE+E    +++G T
Sbjct: 117 AVEAVMAGKTYFTTIDPAAL------LRQLSPERSGREDLFDHLSPRELEVFRLLADGLT 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E A  L IS  TV  +  ++M K    T       A+R+ ++
Sbjct: 171 VKEAAAELHISPKTVETHKYNLMEKLEVGTIPDLTKLAIRHGLI 214


>gi|315502094|ref|YP_004080981.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408713|gb|ADU06830.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 216

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L   V     +  + E   GA    LV     +   +D  + +   
Sbjct: 4   DVLVVDDDELIRVGLRAIVDAQPDLRVVGEAADGAQVPPLVAKLRPRVVLMDVRMPAIDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  +  D        P  L    F                +       A +   
Sbjct: 64  IQATRRLLAASADP-------PRVLVVTTFANDEYVYEALRAGAAGFLLKRARPAEVVQA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++    + ++        + +   D    +   LT RE E L  ++ G ++
Sbjct: 117 IRVVAAGDSLLFPAAIRQL-------VDTYGRRDGDRLRAARLTEREAEVLRLMAAGLSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 170 PEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212


>gi|253999276|ref|YP_003051339.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|253985955|gb|ACT50812.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
          Length = 213

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 65/241 (26%), Gaps = 32/241 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  +          L   +  +  +   +                G     L  
Sbjct: 3   EPIKVMLVDDHAVVRMGFKMLLESASDIKVIAEAEN---------------GEQGIKLYM 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      + +  +   +             L                 
Sbjct: 48  EHHPDVVVMDITMPGIGGLEAIERIMAKDSS--------AKVLVLSAHEDSVHPKRVLNA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y +       +   +  +    R +      ++           +           
Sbjct: 100 GAMGYLTKRSAAEELIKAIRTVAGNKRYLEATVAQQMA---------IQQLSGEANPVDV 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    +++GKT+++IA  L +S  TV  ++ +I +K      +     A+R+ +
Sbjct: 151 LSDREFEVFIALAKGKTTNDIAETLSLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSGL 210

Query: 246 V 246
           +
Sbjct: 211 I 211


>gi|256395183|ref|YP_003116747.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361409|gb|ACU74906.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +    E    +    L          +D  +     
Sbjct: 3   RVLLADDQALVRAGFRALLEVQDGIEVAGEAADGAEAHRLAAELAPDVILMDIRMPGTDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +   EK      L     L    F              + +     + A +  G
Sbjct: 63  LEATRLITADEK------LSGVRILILTTFELDEYVFEAIRAGASGFLLKDTEPADLLRG 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           L  +     ++       +  +A +     ++      +  + LT RE E L  ++ G +
Sbjct: 117 LRAVAAGEALLAPSVTRRL--IAEFAVRSKRTGPNPAAEQIKALTEREREVLALVAAGLS 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++EIA  L +S  T   +++  M K   + R+  +  A  + +
Sbjct: 175 NEEIADRLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYESGL 217


>gi|196229776|ref|ZP_03128640.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226102|gb|EDY20608.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 212

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 13/191 (6%)

Query: 51  ALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
                 G++   L     +      +D  +      +  R +           L +   +
Sbjct: 29  RCISDYGSAEAALAGLVKEPPDFVLMDINLPGKSGIECTRELKRR--------LPKLEIV 80

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              +F              + Y       A +   L  L   G  +      ++      
Sbjct: 81  MLTMFDDRDNLFEALRAGASGYLLKRTSPAGLLEALNQLKAGGSPMSPQIARQVVHFFRQ 140

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                ++      K   L+ RE E L  ++EG+   EIA  L +S +TV  YI     K 
Sbjct: 141 NEPAAEANGAVIEK---LSARENEILRCLAEGRHYKEIADQLNLSMDTVRTYIRRTYEKL 197

Query: 229 ATKTRSGAIAY 239
              +R+ A+  
Sbjct: 198 HVHSRTEAVVK 208


>gi|125717095|ref|YP_001034228.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|262283716|ref|ZP_06061480.1| two-component response transcriptional regulator [Streptococcus sp.
           2_1_36FAA]
 gi|323353591|ref|ZP_08088124.1| two component system response regulator [Streptococcus sanguinis
           VMC66]
 gi|125497012|gb|ABN43678.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           sanguinis SK36]
 gi|262260562|gb|EEY79264.1| two-component response transcriptional regulator [Streptococcus sp.
           2_1_36FAA]
 gi|322121537|gb|EFX93300.1| two component system response regulator [Streptococcus sanguinis
           VMC66]
 gi|324990443|gb|EGC22381.1| two component system response regulator [Streptococcus sanguinis
           SK353]
 gi|324992278|gb|EGC24200.1| two component system response regulator [Streptococcus sanguinis
           SK405]
 gi|324994360|gb|EGC26274.1| two component system response regulator [Streptococcus sanguinis
           SK678]
 gi|325688533|gb|EGD30550.1| two component system response regulator [Streptococcus sanguinis
           SK72]
 gi|325689555|gb|EGD31560.1| two component system response regulator [Streptococcus sanguinis
           SK115]
 gi|325693874|gb|EGD35793.1| two component system response regulator [Streptococcus sanguinis
           SK150]
 gi|327459586|gb|EGF05932.1| two component system response regulator [Streptococcus sanguinis
           SK1]
 gi|327466995|gb|EGF12509.1| two component system response regulator [Streptococcus sanguinis
           SK330]
 gi|327473049|gb|EGF18476.1| two component system response regulator [Streptococcus sanguinis
           SK408]
 gi|327490831|gb|EGF22612.1| two component system response regulator [Streptococcus sanguinis
           SK1058]
 gi|328945374|gb|EGG39527.1| two component system response regulator [Streptococcus sanguinis
           SK1087]
 gi|332358394|gb|EGJ36219.1| two component system response regulator [Streptococcus sanguinis
           SK49]
 gi|332364228|gb|EGJ42003.1| two component system response regulator [Streptococcus sanguinis
           SK1059]
 gi|332364532|gb|EGJ42303.1| two component system response regulator [Streptococcus sanguinis
           SK355]
          Length = 227

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +    +  +  +        +++ +               
Sbjct: 2   IKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKLHRV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D I+       +   +      + Y  ++    +    F       +      
Sbjct: 47  -----RPDVILMDIRMPVMDGVLCTKAVKEQYPDVKI---IILTTFDDDEFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  ++  G +I  +   ++  + +  A    +  V      +++
Sbjct: 99  SGYILKGVSTEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  
Sbjct: 159 RTEWKIIQQIGFGISNKEIAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTG 215


>gi|294630991|ref|ZP_06709551.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292834324|gb|EFF92673.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 244

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     R++        +  V        + +        ++  
Sbjct: 27  RVRVVLVDDHRMFRTGVQAEIGRTE--------ETGVEVVGEAADVDQA-----VSVITA 73

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A    D    V      L   V     + I    G 
Sbjct: 74  ARPEVVLLDVHLPGGGGVEVLRRCAALMADSERPV----RFLALSVSDAAEDVIGVIRGG 129

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T   A +   +  +     +           LA +  + F S D     +   
Sbjct: 130 ARGYVTKTITGADLVDSIFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 182

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 183 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 242

Query: 245 IV 246
           +V
Sbjct: 243 LV 244


>gi|297193492|ref|ZP_06910890.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718233|gb|EDY62141.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 224

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 66/243 (27%), Gaps = 27/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +   +      L    D +A +                    G          
Sbjct: 2   TTVLIVDDQPMQRFGFRMLLESQDDMAVVGEAGN---------------GTDAVRQTAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S          R   L    F              
Sbjct: 47  HPDVVLMDIRMPGLDGIEATRRIVASG--------ARTRVLIVTTFDLDEYAYKGLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG----KD 183
           + +         +  G+  +     ++       +            +          + 
Sbjct: 99  SGFLIKDAMPEELLSGIRAVAAGDAVVAPSLTRRLLDTYVQHLPESTAAGTVEPVPDERL 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E LT I +G T+ EIA    ++ +TV  +++ I+ KT  + R  A+  A   
Sbjct: 159 ARLTEREREILTVIGQGWTNTEIASRFHLAESTVKTHVSRILAKTGARDRVQAVILAYDT 218

Query: 244 NIV 246
            +V
Sbjct: 219 RLV 221


>gi|171915529|ref|ZP_02930999.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 234

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 28/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +D+   +F+  L  + +     +           +  L               
Sbjct: 19  LRVAVVEDDKVVRTFIERLLGKPEHNCEFVGA--WADAESALREL------------PAS 64

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L+  ++              T    P                
Sbjct: 65  EPDVVVVDLELPLMSGAELISVLSRK---MISAAFVVLTVHDDPAK-----VFAALRAGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I  G+      G  + ++    +        +  +           LT
Sbjct: 117 HGYLLKGSKPEDIVGGIRSASEGGAPLSQEIARLL------IQSFQEPPKTEKPPIPGLT 170

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE + L  +++G    E+A  L +S  TV +Y+  + +K   ++R+ A+   +++N
Sbjct: 171 PRETQILERLAQGMVPKEVAFELSLSYETVRDYLKGVYQKLHVRSRTEAVIKFLQHN 227


>gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas
           entomophila L48]
          Length = 235

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 80/227 (35%), Gaps = 15/227 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCM 90
           + ++            + ++   +G   F+L   +  +++ ++ I  V  DW  D +R  
Sbjct: 10  VQQIEQATTLALIQSAVRSVARPLGYDRFVLFSANAARDEVVERIHWVEGDWFGDGLRV- 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPE---------NITPPAGMDNRYCSLTFDVARIR 141
                 ++  V +       P F +  E            P     +      F  A + 
Sbjct: 69  DAQTYIRHCPVNRHLLTAREPFFWSKREGEGGERYHVVRAPVGTGVHGLQVPVFGPAGLE 128

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISE 199
             + L               + LLA    +  +         +   L+ RE + L W + 
Sbjct: 129 GAMSL-GGLHIDASPATRMCLALLANAAFHAARRLLEAPVGQEVGVLSERERQVLAWTAA 187

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+   +IA  LG+S  TV N++ +  R+    T + AI  A+ + ++
Sbjct: 188 GQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGVL 234


>gi|262374576|ref|ZP_06067850.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
 gi|262310572|gb|EEY91662.1| nitrate/nitrite response regulator [Acinetobacter junii SH205]
          Length = 219

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 21/226 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
                R   V   P     +A ++ L+  +S   +     E +       +  +      
Sbjct: 8   ETSPARLLLVDDHPLLRRAVAELLSLESDLSVVGQASNGQEALDF-----LAKNDVDLVI 62

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      + ++ +     +           +   V  +  +         + Y   
Sbjct: 63  LDHKMPILTGMETLKEIKARNFN--------TKTILFTVSDSGEDIQEALKLGVDGYLLK 114

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             +   I   + ++     +I       +  +                    LT RE++ 
Sbjct: 115 DIEPELIITDIRIILRGELVISPSLAPILAQIL--------RTPSIEDISSNLTSRELQV 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  ISEG ++  IA  L I+ +TV  ++  I+ KT  +TR  A  +
Sbjct: 167 IQMISEGLSNKMIAHKLSITESTVKVHVKHILNKTGLRTRVEAAVW 212


>gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 218

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   +    +    + +  +  +   V    R   L               
Sbjct: 2   IRVLIADDQDMVRAGFRMILGAQEDIEVVADVSDGVEAVRRAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +A         V      +    F           G  
Sbjct: 47  RPDVCLLDIRMPGLDGLEVTRQLAGPG------VADPLKVVVVTTFDLDEYVHAALQGGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +        ++       +           K       +  ELT
Sbjct: 101 SGFLLKDAGPTLLIEAVRAAARGDALVSPQVTVRLLRHFGR-----KQRPDRSTRAKELT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE++ +   + G T+ EI   L +S +TV  ++AS+ +K   + R    A+A RN I+
Sbjct: 156 GRELDVVRAAARGLTNSEIGAELYLSLSTVKTHLASVQQKLGVRNRVEIAAWAWRNGIM 214


>gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
 gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis
           str. MC2 155]
          Length = 220

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 73/241 (30%), Gaps = 28/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLV 64
             V +VL  + E     +  +                 +++ R+  + + VGA     +V
Sbjct: 5   SPVRLVLVDDHEMVIEGLKAML---------------AAFSDRVLVVGQAVGAEKAVSVV 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +      DL + +     ++          +   V+           
Sbjct: 50  EELDPDIVLCDVRMQGVSGLDLCQTLLERNPER--------KVVMLSVYDDEQYLFQALR 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   +     +   L         I           AA             G   
Sbjct: 102 VGAAGYLLKSISSDDLVHQLEFAHSGETAIDPVMAARAAGTAARLQRDEFWPGARQG--- 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L+++  G ++  IA  L I   TV  ++ SI RK     R+GA+A A+R  
Sbjct: 159 -LTQRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSDRAGAVATALREG 217

Query: 245 I 245
           I
Sbjct: 218 I 218


>gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     L   +     +    E   G     L    +F    LD  +      
Sbjct: 4   VLLAEDQVMVRQGLKAMIETDEDIKVTGEADDGRKALRLCETHVFDVAILDIRMPEMDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + M L               L    F      +       N Y     D   +   +
Sbjct: 64  EAAKMMRLRYPKM--------KILMLTTFDDHQYVVESLKLGVNGYMLKNGDTESLIRSI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                 G  +           AA               D  LT RE   LT I EG  + 
Sbjct: 116 KSTINGGLSLEDQV-------AAKVVPTLLQNQEEPSIDPSLTPRERAILTCIGEGLNNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LG+S  TV N  + I  K A + R+    YA+R+ +V
Sbjct: 169 EIAERLGLSVGTVKNQTSHIFDKLALRDRTQLAIYAIRHRLV 210


>gi|255264823|ref|ZP_05344165.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium
           sp. R2A62]
 gi|255107158|gb|EET49832.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium
           sp. R2A62]
          Length = 258

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            +  +            +  L +     H +        EQ         +    V+   
Sbjct: 8   FIEELEQATSLNHLQDSISDLRDLYKIDHIVYHWVSSDGEQYG----CGTYDRSWVQRYV 63

Query: 92  LSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAG-MDNRYCSLTFDVARI 140
             +  +   V+    + F PV               +     AG     Y          
Sbjct: 64  EQDYLRIDPVVVGCFQRFHPVDWKRLDWSSKAARTFQAEAIEAGVGIQGYSIPIRGPNGQ 123

Query: 141 RIGLMLLFPKGRII----LRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECL 194
                                   ++ L+A         ++ +   +    L+ REV+ +
Sbjct: 124 FALFSASHNCDDDWWANWTEANRRDLILIAHTFNQKGLEFEKNRVPEAAKGLSPREVDAM 183

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+++ G +  ++A  L IS +T+  YI S   K      + A+A A+ + ++
Sbjct: 184 TFLAMGYSRAQVANTLSISEHTLRAYIESARFKLGALNTTHAVARAMAHGLI 235


>gi|256786173|ref|ZP_05524604.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289770068|ref|ZP_06529446.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700267|gb|EFD67696.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 9/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D  A   PL   +     +  +     G      V         +D  +      
Sbjct: 13  VIVADDQAAVREPLAAVLGLAEDIDVVAAAADGTEVLAAVAAGPVDVVLMDLRMPVLDGI 72

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +                 +    F      +         Y +       I   +
Sbjct: 73  ETTRRLTEEH--------PEVAVVVLTTFADDESILGALGAGARGYLTKNAGRQDITRAI 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +       ++ R+    +   A  +A              +LT RE E L  I +G ++ 
Sbjct: 125 LAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLSNR 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L IS  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 185 GIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225


>gi|163744256|ref|ZP_02151616.1| Transcriptional activator protein RaiR, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161381074|gb|EDQ05483.1| Transcriptional activator protein RaiR, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 239

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 65/237 (27%), Gaps = 21/237 (8%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P    +  R+   D   +      AL ++ G  H +    D   EQ         +    
Sbjct: 5   PHLEQIWERLAQADGQAALGQVSEALRDHYGILHVVYHWIDTAGEQYG----CGTYGALW 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTF 135
                     +   V+      F PV     +  +  A             +  +     
Sbjct: 61  SDRYHEHNYLRIDPVVSGCYRRFEPVDWKDLDWTSRAARKFRRDASDHGVGNQGFSVPVR 120

Query: 136 DVARIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGR 189
                                        ++   A        +       G    L+ R
Sbjct: 121 GPHGQFALFTTNHSCTDALWSSFTARHRRDLIWAAHCFNEKALALAPNRRPGAVQALSPR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EV+ +T ++ G    ++A  L IS +T+  Y+ S   K      + A+A A+   ++
Sbjct: 181 EVDAMTLLAVGYNRAQVAQRLSISEHTLRAYVESARFKLGASNTTHAVARALSRGLI 237


>gi|319939666|ref|ZP_08014025.1| response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811255|gb|EFW07561.1| response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 210

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D     + L   +     +  + E   G                +D ++     
Sbjct: 2   HILLVDDHEMVRLGLKGYLDLQDDVDVVAEASNGREGVEKALELRPDVIMMDIVMPEMSG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 L    +    +           Y   T     I   
Sbjct: 62  IEATLTILKEW--------PEAKILILTSYLDNEKIYPVLDAGAKGYMLKTSSADDILRA 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I  +   ++     +                +LT RE + L  +++G  +
Sbjct: 114 VRKVAKGELAIETEVSQKVEYHRNHIELHE-----------DLTARERDILGLLAKGYEN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 163 QRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 65/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D     + +         +  + E   GA     V     Q   +D  +     
Sbjct: 5   RLMLVDDHEVVRLGMRAAFELEPDITIVGEASNGAEAVAKVGVLAPQVILMDVRMEKMSG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           +             +           + Y       A +   
Sbjct: 65  IEACREIKS-----RDPQVNILMITSYTDERAIL---ASTLAGASGYLLKNVSRAELLKA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++   +  +    A                   +T RE E L  ++ G T+
Sbjct: 117 IRRVATGASLLDPKQRQQALTTA-----------TANAPKEAITEREREVLALVARGYTN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  T  N+++ I+ K     RS A  YAV +N+V
Sbjct: 166 KQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAVYAVEHNLV 208


>gi|262373940|ref|ZP_06067217.1| response regulator [Acinetobacter junii SH205]
 gi|262310951|gb|EEY92038.1| response regulator [Acinetobacter junii SH205]
          Length = 211

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     LVR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDHPDVDVIGQAES---------------GEEAIALVRQK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  S  D           +        P          
Sbjct: 47  HPQVVLLDVNMPGIGGVETTRRLLQSAPD--------TKVIAVSGLAEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    ++ +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPISEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K    +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLI 209


>gi|262376982|ref|ZP_06070208.1| response regulator [Acinetobacter lwoffii SH145]
 gi|262308020|gb|EEY89157.1| response regulator [Acinetobacter lwoffii SH145]
          Length = 211

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     LVR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDHAEVQVIGQAES---------------GEEAISLVRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +  S         +             P          
Sbjct: 47  HPDVVLLDVNMPGIGGVETTRRLLQS-----APETKVLAVSGL---AEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    ++ +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPISEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K    +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLNIDSDVKLTHLAMRYGLI 209


>gi|15802349|ref|NP_288375.1| response regulator [Escherichia coli O157:H7 EDL933]
 gi|15831906|ref|NP_310679.1| response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|26248179|ref|NP_754219.1| response regulator [Escherichia coli CFT073]
 gi|82776406|ref|YP_402755.1| response regulator [Shigella dysenteriae Sd197]
 gi|91211133|ref|YP_541119.1| response regulator [Escherichia coli UTI89]
 gi|157161385|ref|YP_001458703.1| response regulator [Escherichia coli HS]
 gi|168751837|ref|ZP_02776859.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4113]
 gi|168758223|ref|ZP_02783230.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4401]
 gi|168777336|ref|ZP_02802343.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4196]
 gi|168790332|ref|ZP_02815339.1| response regulator UvrY [Escherichia coli O157:H7 str. EC869]
 gi|191173273|ref|ZP_03034803.1| response regulator UvrY [Escherichia coli F11]
 gi|195939217|ref|ZP_03084599.1| response regulator [Escherichia coli O157:H7 str. EC4024]
 gi|208810653|ref|ZP_03252529.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4206]
 gi|208816650|ref|ZP_03257770.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4045]
 gi|208819040|ref|ZP_03259360.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4042]
 gi|209396376|ref|YP_002271026.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4115]
 gi|215487119|ref|YP_002329550.1| response regulator [Escherichia coli O127:H6 str. E2348/69]
 gi|217329053|ref|ZP_03445134.1| response regulator UvrY [Escherichia coli O157:H7 str. TW14588]
 gi|218558772|ref|YP_002391685.1| response regulator [Escherichia coli S88]
 gi|218689907|ref|YP_002398119.1| response regulator [Escherichia coli ED1a]
 gi|218699522|ref|YP_002407151.1| response regulator [Escherichia coli IAI39]
 gi|218705409|ref|YP_002412928.1| response regulator [Escherichia coli UMN026]
 gi|227885660|ref|ZP_04003465.1| response regulator [Escherichia coli 83972]
 gi|237705869|ref|ZP_04536350.1| response regulator UvrY [Escherichia sp. 3_2_53FAA]
 gi|254793564|ref|YP_003078401.1| response regulator [Escherichia coli O157:H7 str. TW14359]
 gi|260855894|ref|YP_003229785.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O26:H11 str. 11368]
 gi|261227592|ref|ZP_05941873.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255822|ref|ZP_05948355.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O157:H7 str. FRIK966]
 gi|291283091|ref|YP_003499909.1| Response regulator uvrY [Escherichia coli O55:H7 str. CB9615]
 gi|293405400|ref|ZP_06649392.1| response regulator [Escherichia coli FVEC1412]
 gi|293410273|ref|ZP_06653849.1| two component transcriptional [Escherichia coli B354]
 gi|293415223|ref|ZP_06657866.1| response regulator uvrY [Escherichia coli B185]
 gi|298381044|ref|ZP_06990643.1| two-component system [Escherichia coli FVEC1302]
 gi|300899166|ref|ZP_07117445.1| response regulator UvrY [Escherichia coli MS 198-1]
 gi|300904799|ref|ZP_07122627.1| response regulator UvrY [Escherichia coli MS 84-1]
 gi|300928944|ref|ZP_07144448.1| response regulator UvrY [Escherichia coli MS 187-1]
 gi|300935888|ref|ZP_07150845.1| response regulator UvrY [Escherichia coli MS 21-1]
 gi|300951537|ref|ZP_07165371.1| response regulator UvrY [Escherichia coli MS 116-1]
 gi|300956572|ref|ZP_07168852.1| response regulator UvrY [Escherichia coli MS 175-1]
 gi|300982241|ref|ZP_07175953.1| response regulator UvrY [Escherichia coli MS 200-1]
 gi|300993976|ref|ZP_07180623.1| response regulator UvrY [Escherichia coli MS 45-1]
 gi|301018237|ref|ZP_07182752.1| response regulator UvrY [Escherichia coli MS 69-1]
 gi|301050733|ref|ZP_07197591.1| response regulator UvrY [Escherichia coli MS 185-1]
 gi|301305254|ref|ZP_07211351.1| response regulator UvrY [Escherichia coli MS 124-1]
 gi|306814262|ref|ZP_07448428.1| response regulator [Escherichia coli NC101]
 gi|312967115|ref|ZP_07781333.1| response regulator [Escherichia coli 2362-75]
 gi|331647506|ref|ZP_08348598.1| response regulator UvrY [Escherichia coli M605]
 gi|331657959|ref|ZP_08358921.1| response regulator UvrY [Escherichia coli TA206]
 gi|331673432|ref|ZP_08374200.1| response regulator UvrY [Escherichia coli TA280]
 gi|54039838|sp|P66798|UVRY_ECO57 RecName: Full=Response regulator uvrY
 gi|54042601|sp|P66797|UVRY_ECOL6 RecName: Full=Response regulator uvrY
 gi|12516012|gb|AAG56929.1|AE005414_6 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|26108583|gb|AAN80786.1|AE016762_39 UvrY protein [Escherichia coli CFT073]
 gi|13362120|dbj|BAB36075.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|81240554|gb|ABB61264.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|91072707|gb|ABE07588.1| putative 2-component transcriptional regulator [Escherichia coli
           UTI89]
 gi|157067065|gb|ABV06320.1| response regulator UvrY [Escherichia coli HS]
 gi|187767375|gb|EDU31219.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4196]
 gi|188014180|gb|EDU52302.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4113]
 gi|189354916|gb|EDU73335.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4401]
 gi|189370219|gb|EDU88635.1| response regulator UvrY [Escherichia coli O157:H7 str. EC869]
 gi|190906390|gb|EDV65999.1| response regulator UvrY [Escherichia coli F11]
 gi|208725169|gb|EDZ74876.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4206]
 gi|208730993|gb|EDZ79682.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4045]
 gi|208739163|gb|EDZ86845.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4042]
 gi|209157776|gb|ACI35209.1| response regulator UvrY [Escherichia coli O157:H7 str. EC4115]
 gi|209767048|gb|ACI81836.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767050|gb|ACI81837.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767052|gb|ACI81838.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767054|gb|ACI81839.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209767056|gb|ACI81840.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|215265191|emb|CAS09580.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217318400|gb|EEC26827.1| response regulator UvrY [Escherichia coli O157:H7 str. TW14588]
 gi|218365541|emb|CAR03268.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli S88]
 gi|218369508|emb|CAR17275.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli IAI39]
 gi|218427471|emb|CAR08367.2| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli ED1a]
 gi|218432506|emb|CAR13399.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli UMN026]
 gi|222033655|emb|CAP76396.1| Response regulator uvrY [Escherichia coli LF82]
 gi|226900626|gb|EEH86885.1| response regulator UvrY [Escherichia sp. 3_2_53FAA]
 gi|227837233|gb|EEJ47699.1| response regulator [Escherichia coli 83972]
 gi|254592964|gb|ACT72325.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli O157:H7 str. TW14359]
 gi|257754543|dbj|BAI26045.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O26:H11 str. 11368]
 gi|281178976|dbj|BAI55306.1| two-component response regulator [Escherichia coli SE15]
 gi|284921827|emb|CBG34900.1| response regulator [Escherichia coli 042]
 gi|290762964|gb|ADD56925.1| Response regulator uvrY [Escherichia coli O55:H7 str. CB9615]
 gi|291427608|gb|EFF00635.1| response regulator [Escherichia coli FVEC1412]
 gi|291432871|gb|EFF05850.1| response regulator uvrY [Escherichia coli B185]
 gi|291470741|gb|EFF13225.1| two component transcriptional [Escherichia coli B354]
 gi|294489952|gb|ADE88708.1| response regulator UvrY [Escherichia coli IHE3034]
 gi|298278486|gb|EFI20000.1| two-component system [Escherichia coli FVEC1302]
 gi|300297550|gb|EFJ53935.1| response regulator UvrY [Escherichia coli MS 185-1]
 gi|300307311|gb|EFJ61831.1| response regulator UvrY [Escherichia coli MS 200-1]
 gi|300316619|gb|EFJ66403.1| response regulator UvrY [Escherichia coli MS 175-1]
 gi|300357225|gb|EFJ73095.1| response regulator UvrY [Escherichia coli MS 198-1]
 gi|300399824|gb|EFJ83362.1| response regulator UvrY [Escherichia coli MS 69-1]
 gi|300403313|gb|EFJ86851.1| response regulator UvrY [Escherichia coli MS 84-1]
 gi|300406422|gb|EFJ89960.1| response regulator UvrY [Escherichia coli MS 45-1]
 gi|300449212|gb|EFK12832.1| response regulator UvrY [Escherichia coli MS 116-1]
 gi|300458938|gb|EFK22431.1| response regulator UvrY [Escherichia coli MS 21-1]
 gi|300463098|gb|EFK26591.1| response regulator UvrY [Escherichia coli MS 187-1]
 gi|300839460|gb|EFK67220.1| response regulator UvrY [Escherichia coli MS 124-1]
 gi|305852421|gb|EFM52872.1| response regulator [Escherichia coli NC101]
 gi|307553927|gb|ADN46702.1| response regulator UvrY [Escherichia coli ABU 83972]
 gi|307626609|gb|ADN70913.1| response regulator [Escherichia coli UM146]
 gi|312288579|gb|EFR16481.1| response regulator [Escherichia coli 2362-75]
 gi|312946506|gb|ADR27333.1| response regulator [Escherichia coli O83:H1 str. NRG 857C]
 gi|315257256|gb|EFU37224.1| response regulator UvrY [Escherichia coli MS 85-1]
 gi|315286613|gb|EFU46046.1| response regulator UvrY [Escherichia coli MS 110-3]
 gi|315290294|gb|EFU49672.1| response regulator UvrY [Escherichia coli MS 153-1]
 gi|315296529|gb|EFU55826.1| response regulator UvrY [Escherichia coli MS 16-3]
 gi|320191887|gb|EFW66534.1| response regulator [Escherichia coli O157:H7 str. EC1212]
 gi|320194374|gb|EFW69005.1| response regulator [Escherichia coli WV_060327]
 gi|320641761|gb|EFX11149.1| response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320647121|gb|EFX15954.1| response regulator [Escherichia coli O157:H- str. 493-89]
 gi|320652404|gb|EFX20702.1| response regulator [Escherichia coli O157:H- str. H 2687]
 gi|320658006|gb|EFX25768.1| response regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658578|gb|EFX26272.1| response regulator [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668476|gb|EFX35303.1| response regulator [Escherichia coli O157:H7 str. LSU-61]
 gi|323152755|gb|EFZ39027.1| response regulator [Escherichia coli EPECa14]
 gi|323940423|gb|EGB36614.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323952409|gb|EGB48282.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323956311|gb|EGB52054.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323968330|gb|EGB63737.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|324007282|gb|EGB76501.1| response regulator UvrY [Escherichia coli MS 57-2]
 gi|324013557|gb|EGB82776.1| response regulator UvrY [Escherichia coli MS 60-1]
 gi|326342320|gb|EGD66101.1| response regulator [Escherichia coli O157:H7 str. 1044]
 gi|326344827|gb|EGD68574.1| response regulator [Escherichia coli O157:H7 str. 1125]
 gi|327253043|gb|EGE64697.1| response regulator [Escherichia coli STEC_7v]
 gi|330911721|gb|EGH40231.1| barA-associated response regulator UvrY ( GacA SirA) [Escherichia
           coli AA86]
 gi|331043230|gb|EGI15368.1| response regulator UvrY [Escherichia coli M605]
 gi|331056207|gb|EGI28216.1| response regulator UvrY [Escherichia coli TA206]
 gi|331069630|gb|EGI41017.1| response regulator UvrY [Escherichia coli TA280]
 gi|332089647|gb|EGI94749.1| response regulator [Shigella boydii 5216-82]
          Length = 218

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +    C         A               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              +   V    P          
Sbjct: 47  AVDVVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|167554141|ref|ZP_02347882.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442551|ref|YP_002041509.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198244741|ref|YP_002216317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857666|ref|YP_002244317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194401214|gb|ACF61436.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197939257|gb|ACH76590.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205321582|gb|EDZ09421.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|206709469|emb|CAR33813.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 215

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 3   EVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++                    + +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRV--------NEYLRERERFGAQEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|289705344|ref|ZP_06501740.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557859|gb|EFD51154.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 230

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 13/227 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   V     +  + E   G      V         +D  +     
Sbjct: 10  RVALVDDQALIRSGLAMLVDSQPDLTVVAEAGSGREAVASVSVAGADVVLMDVRMPEMDG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  +    F              + +         +   
Sbjct: 70  IEATRALLRRP--------DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAA 121

Query: 144 LMLLFPKGRIILRDRLWEIGL-LAAYQAN---MFKSYDVHWGKDFELTGREVECLTWISE 199
           +  +     +I       +   +A    +        +        LT RE E L  +++
Sbjct: 122 IRTVHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQ 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L +S  TV  ++  ++ K   + R  A+  A R  +V
Sbjct: 182 GAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228


>gi|91774800|ref|YP_544556.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91708787|gb|ABE48715.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 212

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 65/236 (27%), Gaps = 26/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       V  +     L   +      +    R   L               
Sbjct: 2   LKVFLIDDHALFRKGVGQMIAADPLFEVVGEASSGLEGLERAPGLA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R               R   +   V     + +       
Sbjct: 48  -PDIVLIDLNMKGVDGLETLRRFKAGSL--------RARFVVLTVSDAEDDLLEALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +  ++   L  +     +I         +L                    LT
Sbjct: 99  DGYLLKDMEPEQLCDSLKKIAEGVTVIQDRLT---EVLRQALQEQGSKPGPATPDQVSLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L ++++G ++  IA  LGIS  TV  ++  ++ K    +R  A  +A R 
Sbjct: 156 DREQEILQFLADGLSNKAIARKLGISDTTVKVHVKHLLSKLRLTSRLEAAVWAHRQ 211


>gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 219

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D L R        +      A     G    L  R        +D  +       
Sbjct: 2   LLADDDGLVRSGLRALLDAEPDICVAAEAATGEEAVLAARSYRPDVVLMDVRMPRRDGVW 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +             RP  L    F          A   + +        ++  G+ 
Sbjct: 62  ATSQIT-------SWPHPRPRVLVLTTFDVDKVVEDALAAGADGFLLKRATPEQLIDGIR 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++     ++       + +     A           +  +LT RE E L  ++EG+++ E
Sbjct: 115 VVAGGDALVAPAVTRRLLVT---LARRRVPDRELLTRADQLTDREAEVLRALAEGRSNTE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L +S  TV  ++  I+ K   + R+ A+ +A R   V
Sbjct: 172 IAAVLNLSVETVRTHVKRILSKLGVRDRTQAVVWAYRAGFV 212


>gi|28898719|ref|NP_798324.1| response regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|260877284|ref|ZP_05889639.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034]
 gi|269967056|ref|ZP_06181124.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|28806937|dbj|BAC60208.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|269828315|gb|EEZ82581.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|308090311|gb|EFO40006.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034]
          Length = 214

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      D          +               +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVVLMDMNMPGIGGLEATKKILRVNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  SGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE--------NPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGML 209


>gi|330830188|ref|YP_004393140.1| GacA-like protein [Aeromonas veronii B565]
 gi|328805324|gb|AEB50523.1| GacA-like protein [Aeromonas veronii B565]
          Length = 214

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +  +                    G +     R  
Sbjct: 2   INVFLVDDHELVRTGIRRILEDVRGIKVVGEAQS---------------GETAVTFCRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  HPDVILMDMNMPGIGGLEATRKILRIRPD--------VRIIVLTIHSENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + L+    R I  +   ++ L     A+              L+
Sbjct: 99  AGYLTKGAAPDEMIQAIRLVHSGQRYISPEIAQQMALSQFASADE--------NPFKSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLGINGDVELTHLAIRYGML 209


>gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 214

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 66/231 (28%), Gaps = 26/231 (11%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   P  ++ +  ++     +     +       G                +D
Sbjct: 3   DTTRVLIVDDHPMVAEGIQSILESYDDIQVVGTLGN-----GQEAIEQAPDLRPDVILMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +           L +   L   +  +     T  +     Y     
Sbjct: 58  LNMPGMGGLSATEIILER--------LPQTRILILSMHDSPEYISTALSHGAKGYILKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I+  +  +    R +       +                       LTGRE   L 
Sbjct: 110 PTDEIKQAIDAVMRGERYLCTGASGSLE-------------PKGDSTREALTGREQTILL 156

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 157 ELAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42]
 gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42]
          Length = 199

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   ++    M  + +   G      V+        +D  +      +  
Sbjct: 7   AEDQQMLLGALGSLLNLEEDMTVVGQGTSGQDAIDFVKKHAPDICLMDIEMPGVSGLEAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  S                   F              + Y         +   +  +
Sbjct: 67  EELKDSGVKII----------ILTTFARSGYFQRALKAGVSGYMLKDSPSDELVSAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R+   + + +I                 + ++  LT RE E L  +++GK + EIA
Sbjct: 117 MKGRRVYAPELMEDI-----------------YSEENPLTEREKEVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NY++ I+ K   K R  AI  +     
Sbjct: 160 NALSIKSGTVRNYVSMILDKLEVKNRIEAITRSKEKGW 197


>gi|149925601|ref|ZP_01913865.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149825718|gb|EDM84926.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 237

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 77/242 (31%), Gaps = 26/242 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D++    +         L  +            +  L               
Sbjct: 14  IRVMLVDDDDRIQQALRLAIETHPELNLVGQAYTLKDAMAVVEEL--------------- 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +L+  +           +     +   VF      I+      
Sbjct: 59  QPEVVLVDLGLPDGSGLELIAHIHQH--------MPGCESMVLTVFGDESHVISSIEAGA 110

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
             Y +     A I   L  L   G  I       +          +   +      ++F 
Sbjct: 111 TGYLTKDTRTADILDRLKQLRAGGSPISPVIARRLLNRFRGVATPDQLPTSKTAVNQEFT 170

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L  +++G    EIA ILG+S NT++ YI  I +K A  +R+ A+  A    
Sbjct: 171 PLSEREQQVLEMVAKGFMQAEIADILGVSINTISTYIKRIYKKLAVNSRTSAVHRANALG 230

Query: 245 IV 246
           ++
Sbjct: 231 LI 232


>gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 203

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 64/238 (26%), Gaps = 36/238 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +     + +  L         +           +   L               
Sbjct: 1   MRILIADDHRVVRTGLRMLLESHPDFEVVGEASSGPETVQKAQEL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +        +R ++                L   +               
Sbjct: 46  RPELVILDLSMPDGNGLLYLRQLSEM-----------TRVLVLTMHDDPAYVRQVIQAGG 94

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +      I      ++           +       K   L+
Sbjct: 95  SGYVLKEAADVELFSAIRAVLSGQTYIYPTLAAKL----------VEEKAGGERKSVPLS 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  ++ G T+ EIA+ L +S  TV  Y   I  K    TRS  + YA+ + +
Sbjct: 145 PRELEVLRLVALGHTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYALEHKL 202


>gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 64/229 (27%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L  ++  +  +             G      V         +D  
Sbjct: 3   IRVVVADDQPIARQGLRMILESEPDLEVVGEA-----VDGLDAIGQVERRRPDLVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +           +     +    F      +         +       
Sbjct: 58  MPRMDGLEATRRLRA---------VTGVEVIVVTTFDLDEYVLDALRAGAVGFLVKDSAP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            RI   +  +     +I  +    +      Q               ELT RE + L  I
Sbjct: 109 ERIVDAVRSVARGDALISPEVTRRL----LEQFVSAAPARAGDATLAELTPRERDVLLGI 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+++ EIA +L +  +TV  ++  ++ K    +R  A+ YA    +V
Sbjct: 165 AAGRSNAEIAALLQLEESTVKGHVGRMLAKLGLHSRVQAVIYAYETGLV 213


>gi|218548549|ref|YP_002382340.1| response regulator [Escherichia fergusonii ATCC 35469]
 gi|218356090|emb|CAQ88707.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia fergusonii ATCC 35469]
 gi|324113632|gb|EGC07607.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325496966|gb|EGC94825.1| response regulator [Escherichia fergusonii ECD227]
          Length = 218

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +                    G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEA---------------CCGEDAVKWCRSN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   V    P          
Sbjct: 47  TVDVVLMDMSMPGIGGLEATRKIARSSADI--------KVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|170769412|ref|ZP_02903865.1| response regulator UvrY [Escherichia albertii TW07627]
 gi|170121736|gb|EDS90667.1| response regulator UvrY [Escherichia albertii TW07627]
          Length = 218

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +    C         A               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              +   V    P          
Sbjct: 47  TVDVVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|166366585|ref|YP_001658858.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088958|dbj|BAG03666.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 237

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 76/255 (29%), Gaps = 32/255 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V +++  + +     +       + +  +      +     +               
Sbjct: 1   MDKVRVIVVEDHDLTRMGLVVALQHREGIQVVGEAISGLQGLKLLEET------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +LVR    +              L   +  T  + +   +
Sbjct: 49  ---KPDVAIIDIGLPMIDGIELVRRFQQNR--GEDP--LATKILMLTMHKTQEQVLAAFS 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---- 180
              + YC     + ++   +         +       +         +  +         
Sbjct: 102 AGADSYCMKDISIDKLIEAIYSTHEGNHWLDPAIANIVLQQVRQNVPVGAAAGTKTVIIQ 161

Query: 181 --GKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +++        LT RE E L  I  G ++ EIA  L I+  TV  ++ +++ K +  
Sbjct: 162 GVDREYHQLLENAPLTAREREILDLIVAGCSNAEIAKRLYITIGTVKTHVRNVLNKLSVD 221

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A+R+ +V
Sbjct: 222 DRTQAAVLALRSGLV 236


>gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 236

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ I++  +D      +         L  +   +                G       
Sbjct: 26  APRLRILIVEDDPMMQLGLEQSLMAHPQLEIVGQAED---------------GYLGVQAA 70

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         + +           L     +      T  E I   +
Sbjct: 71  LALKPDLVVMDIGLPRLDGIATTQQIKA--------ALPETHVVMLTSHKTETEIIAALS 122

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC     + R+   +         +          +A    +  K          
Sbjct: 123 SGADAYCIKGASIERLLNAIAAAVDGAAYLDP-------QIARQVIDHLKPPSAKGNT-A 174

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE+E L  + EG ++ EIA  L +S NTV  ++  IM K A   R  A   A+R+ 
Sbjct: 175 NLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSG 234

Query: 245 IV 246
           +V
Sbjct: 235 LV 236


>gi|284029334|ref|YP_003379265.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808627|gb|ADB30466.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 228

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 25/246 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +     S +  L    D +  +              AL            
Sbjct: 1   MSAIRVLVVDDQLMIRSGLRALLETGDGIEVVGEAADGQRAVSMARALV----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +  +          V      L    F T    +    
Sbjct: 50  ----PDVVLLDLRMPVLDGVGAIAQLRA------DPVTAGIGILVLTTFDTDENVLAALK 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHW 180
              N +   + D   +R  +  +      +           +   A   +   ++     
Sbjct: 100 AGANGFLGKSADYEELRQAVGRVAAGDASLSAVATNTVVGHLASTARKPSVHEQASAEEL 159

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E +T ++ G ++D IA  L IS  T   ++   M K     R+  +  A
Sbjct: 160 RRVDSLTSREREVVTLVARGLSNDVIAEHLFISPMTAKTHVNRAMSKLHVSDRAQLVVAA 219

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 220 LRAGLL 225


>gi|307726840|ref|YP_003910053.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587365|gb|ADN60762.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 223

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 65/234 (27%), Gaps = 25/234 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E +Q+ +++  +       V  L         +           R               
Sbjct: 3   EQKQIRVLVVDDHTLLRRGVIALLMADPRFLVVAEAGDAGEAYRRAAET----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD+ +      D +  +                 L   V     +     
Sbjct: 52  ----QPDIILLDNHLPGVKGVDALAGLKE--------AAPEARVLMLTVSEDANDLAAAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWG 181
            G    Y   T D   +   ++        I  +   ++        N  K         
Sbjct: 100 RGGARGYLLKTVDSDAMTTAIVRTMAGESAISPEMTGKLVSAFNALQNGVKVDEGRPEQN 159

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +L+ RE E L  I++G+T+ EIA  L I+  TV  ++  I+RK    +R  
Sbjct: 160 PIRDLSVREAEILEHIAQGRTNKEIARALNIAEATVKIHVQHILRKLKLSSRVQ 213


>gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 210

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 35  RMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++ ++      + +          E VG +           + K D IV       L  
Sbjct: 2   RILIVEDDPLMQLGLEQALSEYPDFEIVGQAEDGYGGIQKALDLKPDLIVMDIGLPRLDG 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A  +  +    +         +     E +   +   + YC     + R+   +    
Sbjct: 62  IAATKQIKEQLPDIHIVMLTSHTLQT---EVVAALSSGADAYCIKGASLERLLAAIEAAK 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIA 207
                +          +A    +  K       ++   L+ RE+E L  I EGK+++EIA
Sbjct: 119 DGATYLDP-------QIARLVLDNLKPPTPEPNQNLALLSERELEVLKLIVEGKSNNEIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S NT+  ++  IM K A   R  A   A+R+ +V
Sbjct: 172 EDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210


>gi|158520046|ref|YP_001527916.1| two component LuxR family transcriptional regulator [Desulfococcus
           oleovorans Hxd3]
 gi|158508872|gb|ABW65839.1| two component transcriptional regulator, LuxR family [Desulfococcus
           oleovorans Hxd3]
          Length = 214

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 14/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  +     G     L R        +D  +      
Sbjct: 4   VLVADDHKIIREGLCNMLDAEPDLKVVGAASNGREALALARKLSPDVVIMDISMPELNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +             +   +   ++      +         Y         +   +
Sbjct: 64  EATRQIRAEA--------PQAAVIALSMYADKRYVLGMLKAGVAGYLIKDCAFEELARAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +++      +       +  +   + +          +  ELT RE + L  I+EG  + 
Sbjct: 116 VVVHRGETYLSPAIADTVRKVLVTRIDQ-----DPLTRVEELTERERQVLQMIAEGIKTK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L IS  TV  Y +SIM+K    + +    +AVR  I
Sbjct: 171 DIAESLHISVKTVETYRSSIMQKLGLFSVAELTKFAVREGI 211


>gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 221

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D       +   +     +  + E   GA    L R        LD  +   
Sbjct: 8   VIRILLADDHALVRRGVRLILDREPDLEVVAEAGDGAEAIALARGTEVDLAVLDIAMPRM 67

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +     D           L   +               + Y   +     + 
Sbjct: 68  TGIQAARELTALRPD--------LRVLILTMHDNEQYFFQSLKAGASGYVLKSVADRDLV 119

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                       +    +  +        +  +  +     +  LT RE E L  ++EG 
Sbjct: 120 AACRAAMRDEPFLYPGAVTALI---RNYLDRVRHGEEP--PEQILTPREEEVLKLVAEGH 174

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S EIA +L IS  TV+ + A+++ K   + R     YA+R  ++
Sbjct: 175 SSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219


>gi|296140116|ref|YP_003647359.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028250|gb|ADG79020.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 215

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 65/225 (28%), Gaps = 16/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  +    D        +  +     +  +    G   +  V         LD  +    
Sbjct: 1   MVRIVVVDDEALVRRGFELMLGHASDLEVVAAVSGGEAYDTVSRLAPDVVLLDIRMPDVD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L+             V+          F +              +     D   +  
Sbjct: 61  GLTLLDKFTR---MPSPPVVA-----MLTTFDSDEYIAHALRRGAAGFLVKDTDPDHLVQ 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            +  L   G ++           A+   + F           E L+ RE E L  +++G 
Sbjct: 113 LVRSLAEGGVVLSPKV-------ASQVVSGFLGGVAVDDLGTERLSPREREVLVLLADGL 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI   + +S  TV +++++++ K     R  A   A R  ++
Sbjct: 166 SNLEIGRTMHLSVGTVKDHVSALLAKLGVANRVQAALVAQRAGLL 210


>gi|83745537|ref|ZP_00942595.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551]
 gi|207722406|ref|YP_002252842.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738930|ref|YP_002257323.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83727614|gb|EAP74734.1| Hypothetical Protein RRSL_04596 [Ralstonia solanacearum UW551]
 gi|206587585|emb|CAQ18167.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592301|emb|CAQ59207.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 217

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + +  L  R      +                    G       +  
Sbjct: 3   IRILLIDDHALFRTGIRLLLQRQPDFEVVDEASD---------------GLEGIKRAQQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L     +   V     E         
Sbjct: 48  RPDVILLDLNMPGLSGLETLQLLVQD--------LPEAAVVVLTVSEEADELKATLREGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +  G+        +I      ++    A+     K           LT
Sbjct: 100 RGYLVKNIEADALVAGVRKAAAGEPVIAESMTAKL---VAHFRAPEKPVQPEAVPVERLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  +  G ++ EIA  L ++ +TV  ++ +I++K    +R     YAV   +
Sbjct: 157 LRERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVEKGL 214


>gi|149189578|ref|ZP_01867861.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Vibrio shilonii AK1]
 gi|148836557|gb|EDL53511.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Vibrio shilonii AK1]
          Length = 226

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 67/241 (27%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + +  L      L  +                    G       
Sbjct: 10  AEASTILLIDDHPMLRNGIKQLLNTRKHLTVVAEASN---------------GLQGVDYA 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        ++ +                 +   V +   +      
Sbjct: 55  IDYEPDLILLDINMPELDGLKTLKLLRDKHIS--------SKIIIFTVSNYDEDVSKAIK 106

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   +        +I  +      +L        +    +   D 
Sbjct: 107 LGADGYLLKDMEPEELLASIENACLGKTVISPELT---SILVGNLREKKQEKLTNVSIDV 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I+ G ++  IA  L IS +TV  ++ SI++K   ++R  A  +  +  
Sbjct: 164 -LSTREQEILKNIAIGLSNKMIANKLFISESTVKVHVKSILKKLQLRSRVEAAVWVHQEK 222

Query: 245 I 245
           I
Sbjct: 223 I 223


>gi|320012105|gb|ADW06955.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 216

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +    D +  +                    GA+   LV  
Sbjct: 2   PVTVLLVDDEPLVRAGLRAVLEAQDDIEVVGEAAD---------------GAAVIPLVNR 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  +       V   P  L    F             
Sbjct: 47  LRPDVVAMDVRMPLMDGIEATRVVLRT-------VTDPPKILVVTTFENDEYVYEALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    + ++       A    S          L
Sbjct: 100 ADGFLLKRARPAEIVNAVRLVAEGETLLFPAAVRQLA------AEYGTSKAHAAMDRAAL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  ++ G ++ EIA  L +   TV  +++S++ K   + R+ A+  A  +  V
Sbjct: 154 TTREAAVLRLMARGLSNSEIAAELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213


>gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 60/223 (26%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     M    E V GA               +D  +     
Sbjct: 3   RVVIADDQALVRAGVRMLLQAAGEMEVCGEAVDGAQAVQQAELLRPDVLLMDLRMPRMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  S              +    F                +     +  R+   
Sbjct: 63  LEATRRILGSW--------PAARIVILTTFAEDENVYAALRAGAIGFLVKDDEPERMVDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++    L  +   A                   LT RE+E L  +  G ++
Sbjct: 115 VRRAAAGEPLLAPSVLRRVVERALAAEEQAAVQVPA-----GLTDRELEVLALVGVGLSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  ++++ M K   + R+ A   A R  +V
Sbjct: 170 AEIADALHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIGLV 212


>gi|317124103|ref|YP_004098215.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588191|gb|ADU47488.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 73/240 (30%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  +D      V +L + +  +  +  +         + A               
Sbjct: 23  PIRVMLVDDDPIVRMGVRNLLSVAKDIEIVAEVSDGDEVLGGVQA--------------- 67

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  ++     + +R +            Q P  L   V+             
Sbjct: 68  HHPDVIVLDVRMARIGGLEAIRSVKARP--------QAPKILMFTVWDQDDVAERAIEAG 119

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +   T     IR G+  +      +      ++       A   +  D        L
Sbjct: 120 ADGFLLKTASPEEIRSGIRNVAAGLGAVSPKTAAQLFTRLRDDAGSAQRLDAARL-VGTL 178

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ++ G ++ E+A  L +S  TV  ++ S   K     R+ A   A R  ++
Sbjct: 179 TERERDVLAGLARGLSNAELARELFVSETTVKTHLGSAFAKLGVDNRAQAAVLADRAGLL 238


>gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 16/231 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +++ RT  V       + L R+I  +  +    +  +     G      ++        L
Sbjct: 3   DNKIRTIVVDDHALIREGLNRIISFEEDLIICGQFRS-----GEELLNNMKNYNPDVILL 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      + ++          Y  ++        V +     +       + Y    
Sbjct: 58  DINMPGKNGIETLKT-----LKILYPDIKVVM---LTVENDKKTIMESIDIGADAYILKE 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              + I   +  ++   + I +  +     +     +     +        LT RE+  L
Sbjct: 110 SAGSEIVNAIRNVYLGEKYIDKSLIKA---IFLDIKSDVACKNKEIESLKLLTNRELNIL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IS+G  + EIA  L +S  TV NYI SI +K   + R  A  YA+RNNI
Sbjct: 167 YEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIRNNI 217


>gi|16765574|ref|NP_461189.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62180821|ref|YP_217238.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613039|ref|YP_001587004.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167992577|ref|ZP_02573674.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168242357|ref|ZP_02667289.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261744|ref|ZP_02683717.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466061|ref|ZP_02699931.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194449116|ref|YP_002046301.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197265746|ref|ZP_03165820.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|200388108|ref|ZP_03214720.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238913787|ref|ZP_04657624.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|16420784|gb|AAL21148.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|62128454|gb|AAX66157.1| response regulator in two-component regulatory system with NarQ (or
           NarX) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362403|gb|ABX66171.1| hypothetical protein SPAB_00746 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407420|gb|ACF67639.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195631360|gb|EDX49920.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197244001|gb|EDY26621.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|199605206|gb|EDZ03751.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205329245|gb|EDZ16009.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205338346|gb|EDZ25110.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205349503|gb|EDZ36134.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261247456|emb|CBG25283.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994331|gb|ACY89216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158805|emb|CBW18318.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913237|dbj|BAJ37211.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224903|gb|EFX49966.1| Nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715299|gb|EFZ06870.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|332989180|gb|AEF08163.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 215

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 3   EVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++                    + +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRV--------NEYLRERERFGAQEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|311064838|ref|YP_003971564.1| two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313140925|ref|ZP_07803118.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|310867158|gb|ADP36527.1| Two-component system response regulator [Bifidobacterium bifidum
           PRL2010]
 gi|313133435|gb|EFR51052.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 5/217 (2%)

Query: 35  RMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R+  +D            +      VG +  +     +  + + D ++            
Sbjct: 22  RVAVVDDHEMFRAGVIATLQPYFHIVGQAADVEGSIAMIADIRPDVVLLDVHVPGGEGGG 81

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                 K   +      L   V  +  +  +        Y + T     +   +  +   
Sbjct: 82  GAEILAKSQPLSPASAFLALSVSDSPQDVGSVIRAGARGYVTKTITGDDLISSIKQVHEG 141

Query: 151 GRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             +       + +        +          +   L+GRE E +  I+ G T  E+A  
Sbjct: 142 YAVFSPKLAGFVLSAFQGAPMDGAGGARGRDEELDLLSGREQEVMRLIARGYTYKEVAAE 201

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++++++RK     R+    +A    IV
Sbjct: 202 LFISIKTVETHMSNVLRKLQLSNRTELTRWAADRRIV 238


>gi|254465085|ref|ZP_05078496.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium Y4I]
 gi|206685993|gb|EDZ46475.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium Y4I]
          Length = 251

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 68/234 (29%), Gaps = 21/234 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
             +L  +   +      + +  + E  G  H + +  +              +       
Sbjct: 20  DRILEALDATETLEGLQLIVEQVCEVFGVDHAMYLWVETAGNHYY----FGTYSEAWTGR 75

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLTFDVA 138
                  +   V+    + F PV     +           +       +  Y        
Sbjct: 76  YLDKAYSRVDPVVVGCYQRFHPVDWKRLDWNPKPAREFLKDAMEHGVGNQGYAIPIRGPN 135

Query: 139 RIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVE 192
                  L    G       +     +  L+A Y        +     +    L+ REV+
Sbjct: 136 GQFALFTLSHNCGDAAWEKLVAKYNRDFILVAHYFNRKVLELEPSRTAEHAQPLSPREVD 195

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LT ++ G +  ++A  L IS +T+  YI S   K      + AIA AV   ++
Sbjct: 196 ALTLLAIGYSRAQVAQTLAISEHTLRVYIESARFKLGAINTTHAIARAVSLGLI 249


>gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR
 gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica]
 gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica
           W22703]
          Length = 244

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D V+    +       V
Sbjct: 12  NEDIKNYIQRRIKTYGDLCYSYLVMNK--KTPLHPTIISNYPLDWVKKYKKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +    +   P                    +     + N Y  +  D +     L +   
Sbjct: 70  ILTAKDKVAPFAWDDNSVINKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNG 129

Query: 150 KGRIILRDRLWEI-----GLLAAYQANMF-----KSYDVHWGKDFE-----LTGREVECL 194
               I  D   EI      +L              + D +  ++ +      + RE E L
Sbjct: 130 SDDSISFDERIEINKEKIQMLLIITHEKMLGLYQSNSDKNENRNTQIERDIFSPRENEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W S GKT  EI++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 190 YWASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL
           F2-208]
          Length = 127

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGK 182
           Y     D   +   + ++   G  I      ++     + A+                  
Sbjct: 1   YLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMP 60

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A++
Sbjct: 61  LHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIK 120

Query: 243 NNIV 246
           +  V
Sbjct: 121 HGWV 124


>gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 193

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 51/190 (26%), Gaps = 14/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L +        LD  +         R +          +          +    
Sbjct: 17  GQEAVDLCQALQPDLALLDIRMPQLDGLAATRLIRQ--------IAPHTRVAIVTMHENP 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y             +         I      ++    A         
Sbjct: 69  DYLVEALRAGVVGYVLKDSTRRTFVAAVRQALRGETFINGSMTVQLLQRLATTHE----- 123

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE E L  I++GKT+ EI  +L IS  TV  ++  I+ K     R+ A
Sbjct: 124 -SSSPPRIQLTRREQEVLQLITQGKTNREIGQLLNISVGTVKIHVEHIIAKLGVSDRTQA 182

Query: 237 IAYAVRNNIV 246
              A+   ++
Sbjct: 183 AVRAIDLGLL 192


>gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 233

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + L  + E     +  L      +  +           ++ AL              
Sbjct: 23  KITVYLLDDHEIVRLGLKDLLESDGDIEVIGESGSVSHALAQIPAL-------------- 68

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              Q   LD  +      D+ R +           ++         F             
Sbjct: 69  -RPQVAVLDGRLPDGSGIDVCREVRSRN-----PEIRAL---ILTSFDDDEALFAAIMAG 119

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       + +   +  +     ++                   +           L
Sbjct: 120 AAGYVLKQIRGSDLVDSVRRVAAGQSLLDPAVTAR-------VLERVRKGPELDPALAPL 172

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T +E   L  I EG T+ +IA  + ++  TV NY++S++ K   + R+ A  +A ++++
Sbjct: 173 TEQERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQRRTQAALFAAKHHL 231


>gi|224583267|ref|YP_002637065.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467794|gb|ACN45624.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 26  EVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGD---------------GASAIDL 70

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 71  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 122

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++              Y     + +       
Sbjct: 123 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVN-------EYLRERER-FGAQEDPF 174

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 175 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRIAATIL 230


>gi|167570554|ref|ZP_02363428.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           oklahomensis C6786]
          Length = 233

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 68/246 (27%), Gaps = 31/246 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S V  L  R      +                    G       +  
Sbjct: 3   IRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASD---------------GVEGVKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           +     +   V     E  T      
Sbjct: 48  QPDVILLDLNMPGLSGLETLQLLVQD--------VPSAHVVILTVSEDAEELTTALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYDVHWGKDF- 184
             +     D   +  G+        +I      +    L A   A               
Sbjct: 100 CGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPQAATRLAQAAAPAPVAHA 159

Query: 185 -----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE + +  ++ G ++ EIA    ++ +TV  ++ +I++K    +R     Y
Sbjct: 160 SVDPDQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKLNLTSRVQIAVY 219

Query: 240 AVRNNI 245
           AV   +
Sbjct: 220 AVERGL 225


>gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5]
 gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR
 gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis]
 gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5]
          Length = 199

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 61/218 (27%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   ++    M  + +   G      V+        +D  +      +  
Sbjct: 7   AEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  +              +    F                Y         +   +  +
Sbjct: 67  EELKDTG----------CKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   + + ++   A                   LT RE E L  +++GK + EIA
Sbjct: 117 MNGKRIYAPELMEDLYSEAN-----------------PLTDREKEVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI+ I+ K   K R  AI  +     
Sbjct: 160 QELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197


>gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 242

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 79/228 (34%), Gaps = 14/228 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRC 89
           L R++ +D        + A  E  G +    +  +      +Q +  +V SD        
Sbjct: 14  LPRILLVDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKAQQIVPDVVISDVMMPRCDG 73

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             L ++ +    L     +F        +         + Y    FD   +   +  +  
Sbjct: 74  YGLLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELIARVRNVVK 133

Query: 150 KGRIILRDRLW----EIGLLAAYQAN--MFKSYDVHWGKDFEL-----TGREVECLTWIS 198
           +   +L +       ++  +A          +         +L     T RE   L  ++
Sbjct: 134 RQERLLTEAARFADTDVSQMAKQITEIRSMLTQGDKNNSKKDLIIPNFTPREESVLQLVA 193

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ NN+V
Sbjct: 194 EGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNLV 241


>gi|330720530|gb|EGG98815.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [gamma proteobacterium IMCC2047]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 74/243 (30%), Gaps = 26/243 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           +N +   + IV+  +       +  L   + L A +I  +        +           
Sbjct: 8   LNIDQSNLRIVVADDHALVRGGLVLLIEMATLNAEIIEANSFDQALEAL----------- 56

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
               + +      LD ++        +  +  +        +         V   +    
Sbjct: 57  ---SQQNPIDLMLLDLMMPGMEGDRGISRLCTAH-----PGVPIIIVS---VNEDIDTIR 105

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSY 176
              A     Y   T         + L+   G  +    L +  +         +   +  
Sbjct: 106 KALAAGAMGYIPKTSSPDVTVSAIKLVLAGGIYVPPHILKQATVQPASNEVQPSEALQKK 165

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   L+ R++E L  I  GK++  IA  LG++  TV  +++ I +K     R+ A
Sbjct: 166 VADAAQISSLSRRQLEVLGLIISGKSNQAIAEELGLTTPTVKMHVSGIFKKLNVSNRTEA 225

Query: 237 IAY 239
           +A 
Sbjct: 226 VAK 228


>gi|307327124|ref|ZP_07606313.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887205|gb|EFN18202.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 216

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 65/221 (29%), Gaps = 12/221 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +S    M  + E   GAS   L R        +D  +     
Sbjct: 4   RILVADDQHLVRAGFRMVLSAESDMEVVAEAADGASALSLARETRPDVCLVDIRMPPPDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R +A         V+          F       T  +   + +       A +   
Sbjct: 64  LEVTRRLAGGGHPGAPKVV------VVTTFDLDEYVYTALSNGASGFLLKDAGPALLTEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +                       LT RE E +  I+ G T+
Sbjct: 118 VRAAVRGDAMVAPQITLRLLQ-----HFTKARRRGASEPAEPLTDREEEVIQGIARGLTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L I+ +TV  ++ S+  K   + R    A+A R+ 
Sbjct: 173 PEIAAELYIAPSTVKTHLGSVQAKLGLRNRVEVAAWAFRSG 213


>gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 199

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   ++    M  + +   G      V+        +D  +      +  
Sbjct: 7   AEDQQMLLGALGSLLNLEDDMEVVGKGTNGKDAVDFVKKHQPDVCIMDIEMPGKTGLEAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  +              +    F                Y         +   +  +
Sbjct: 67  EELKDTG----------CKIIILTTFTRPGYFQRAIKAGVKGYLLKDSPSEELASAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   + + +I   A                   LT RE E L  +++GK + EIA
Sbjct: 117 MNGKRIYAPELMEDIYSEAN-----------------PLTDREKEVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI+ I+ K   K R  AI  +     
Sbjct: 160 QELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197


>gi|260868506|ref|YP_003234908.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O111:H- str. 11128]
 gi|257764862|dbj|BAI36357.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O111:H- str. 11128]
          Length = 218

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +  + C                         +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEVSCGEDAVKWCRT---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              +   V    P          
Sbjct: 47  AVDVVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein
           [Pseudonocardia sp. P1]
          Length = 222

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         +  ++ L   V             GA    +V         LD  +
Sbjct: 4   RVCLVDDQTLVRHGIRSLLGLADDVEVVAEAG-----DGAEGVAMVVEHRPDVVLLDLRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +  +     D           L    F      +         Y      + 
Sbjct: 59  PRHDGMWALGELRARGLD--------VPVLVLTTFDDDELVLQALRAGARGYLLKDVTLE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   +  L   G +I       +        +   +         EL+GRE+E L  ++
Sbjct: 111 QLVGAVRTLAAGGTLISPAITERL----LRAVHGVPAPPDDGAPLQELSGRELEVLRLLA 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G  + EIA +L ++  TV N++++++ K  T+ R+ A+  A+ + ++
Sbjct: 167 AGYANREIAQVLVLAEGTVKNHVSNVLLKLGTRDRTRAVLRALHHGLL 214


>gi|302387360|ref|YP_003823182.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197988|gb|ADL05559.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 222

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +      +               +                 +
Sbjct: 2   IKVLIADDQELIRQSLQIVLNSRQDMTVTDVAADGQEVIRCVRK---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +         + +  S     Y  ++    +    F              
Sbjct: 47  VPDVILMDVRMPKMDGVQCTKIIKES-----YPQIKI---IILTTFDDDEYVYNALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  ++    +I  D   ++    +  A    +  V      ELT
Sbjct: 99  SGYMLKGVSMDELVGAITTVYNGWAMINPDIAAKVLRFFSQMAQADDTISVREKDMEELT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  + +G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+ N
Sbjct: 159 RTEWKIIAQVEKGASNKEIAKNLNLSEGTVRNYLSTILNKLDLRDRTQLAIWAVQTN 215


>gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
 gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas
           testosteroni S44]
          Length = 239

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 70/224 (31%), Gaps = 13/224 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVRCMA 91
              +       +    + A+   +G   F+L        +            F     + 
Sbjct: 13  ALAIEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDWFGTGAPVD 72

Query: 92  LSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIRI 142
                ++  V +   E   P F              +  P G   +      F +  +  
Sbjct: 73  AETYVRHCPVTRHILETNQPFFWTKTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEG 132

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEG 200
            + L   +           + L+A       +       ++    L+ RE E L W + G
Sbjct: 133 AMSL-GGERIDASPQARLALELIAQTAFRTARRLLELPAQEELGPLSDREREVLAWTAAG 191

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +   EIA  LG+S  TV N++  I ++    T + AI  A+RN 
Sbjct: 192 RRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNG 235


>gi|21222754|ref|NP_628533.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|10129764|emb|CAC08319.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 226

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 9/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D  A   PL   +     +  +     G      V         +D  +      
Sbjct: 13  VIVADDQAAVREPLAAVLGLAEDIDVVAAAADGTEVLAAVAAGPVDVVLMDLRMPVLDGI 72

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +                 +    F      +         Y +       I   +
Sbjct: 73  ETTRRLTEEH--------PEVAVVVLTTFADDESILGALGAGARGYLTKNAGRQDITRAI 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++ R+    +   A  +A              +LT RE E L  I +G ++ 
Sbjct: 125 RAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPLPDDLTPREREVLALIGQGLSNR 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L IS  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 185 GIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIGAGL 225


>gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 209

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  + +     +  L    D+   +   +           LT              
Sbjct: 3   VRILIAEDQQLVRQGLVALLAVDDVTI-VGEAEDGKVAIEMARTLT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V      L   V +             
Sbjct: 48  -PDVVLMDLSMPELDGVEATRRIKQ--------VAPHVRVLVLTVANCERRVAEALTAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +      +      ++           +  D+  G    LT
Sbjct: 99  DGYALKKLGHGELMAAINAVCAGKTYLGPGLSEDL------VKEYLEGSDLGGGA---LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G  + EIA  LGI+  TV  +   IM+K      +   AYA+R  ++
Sbjct: 150 AREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGLI 208


>gi|332702953|ref|ZP_08423041.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553102|gb|EGJ50146.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +   P   + L  ++  D        + +     G     L R    +   LD  +
Sbjct: 6   RLLVIDDHPLFREGLKAIVSRDP-----RYVVSAEAGSGVEALQLARSVKPEIILLDLSL 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 DL+      +   +   +             L             Y        
Sbjct: 61  PDGSGLDLIE-----QFKTHLPTVHIVVVSM---HAKLDLIAAAFKAGAEGYLVKESTAE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R+   L  +  + + +      ++       +               LT RE + +  ++
Sbjct: 113 RLLQALDAVTREQQYLDSAISPKVVQKLLEFSTRRAQMTDSAYGS--LTQREQQIMRLLA 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G TS  IA  L I+R TV N+ A+IM K   K  +  + YA R  ++
Sbjct: 171 DGWTSSAIAGKLFITRKTVENHRANIMSKLGLKNLADLVRYAARLGLI 218


>gi|323493301|ref|ZP_08098425.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323312464|gb|EGA65604.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 214

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      +          +               +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEAESGEEAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVILMDMNMPGIGGLEATKKILRFNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHGMI 209


>gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 203

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 65/224 (29%), Gaps = 34/224 (15%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSD 81
           + R++  +        + +L               G    +LV         +D  +   
Sbjct: 1   MIRIVIAEDQGMLLGALRSLLSMEEDMEVVGLAKNGEEALMLVEEHQPDICVMDIEMPVK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D    M  +              +    F                Y      +  + 
Sbjct: 61  TGLDAAEEMHSTGS--------GCKVIILTTFARPGYFERARKASVRGYLLKDSPIEELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    RI   +       L  +              +  LT RE + LT ++EGK
Sbjct: 113 SAIRTIMDGKRIYAPE-------LVDFVYE--------DDSENPLTERESQVLTLVAEGK 157

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA  L +S  TV NYI++I+ K     R  AIA       
Sbjct: 158 TTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 201


>gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 206

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 27/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       + +  ++  + T+ W          +       ++        +D  +   
Sbjct: 9   VVDDHYMVIEGIRSLLQNEKTLDWMGHATNAASCLSF-----LKLHEPDVILMDVNLPDK 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              DL + +   +      VL   T     +   + +         + Y         + 
Sbjct: 64  SGIDLCKEV--KQLYPSVAVLGLSTFNQQAIIKNMID------NGASGYVLKNATKEELL 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +        ++               F S  +       +T RE E L  I+EG 
Sbjct: 116 EAINAVSKGKVYYSQEA--------------FSSLRIPAPDQLLITRREKEVLLLIAEGL 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L IS  TVN +  S++ K   K  +  I  A++  ++
Sbjct: 162 TNAEIAEKLFISIPTVNTHRKSLIEKFNVKNTAMLIGKAIKLGLI 206


>gi|156975022|ref|YP_001445929.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|269959627|ref|ZP_06174007.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
 gi|156526616|gb|ABU71702.1| hypothetical protein VIBHAR_02748 [Vibrio harveyi ATCC BAA-1116]
 gi|269835550|gb|EEZ89629.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3]
          Length = 214

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      D          +               +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEEAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVVLMDMNMPGIGGLEATKKILRVNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  SGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE--------NPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGML 209


>gi|153007788|ref|YP_001369003.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559676|gb|ABS13174.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 213

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 26/234 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E + R   V + P   D L  ++     +            +      L        
Sbjct: 1   MTNECKIRVLLVDNHPLVLDGLRAVLETYDDIDIAGAASNARAALE-----LALTVNPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      D +              ++           +     T      + Y 
Sbjct: 56  VLMDINMPLLNGIDAIELFKKQL-----PGIRILMLSM---HDSREYISTSIMRGASGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G          +              D    K   L+ RE 
Sbjct: 108 LKDVSTTEIVAAIHAVASGGTYFSSGVSEAL-------------LDSGDRKSEGLSVREN 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  ++EG ++ EIA+ LGIS  TV  +  +I +K    + +G   Y + N +
Sbjct: 155 DVLVLVAEGGSNREIAIRLGISEATVETHRKNIKKKLGIASTAGLTRYVIENRL 208


>gi|146312147|ref|YP_001177221.1| response regulator [Enterobacter sp. 638]
 gi|145319023|gb|ABP61170.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 218

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 68/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                        A     G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRIL---------------EDIKGIKVAGEACCGEDAVKWCRSN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A                +   V    P          
Sbjct: 47  SADVVLMDMNMPGIGGLEATRKIAR--------AFVDTKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLTKGAAPQEVVNAIRSVYAGQRYIASDIAQQMALSQI-------EPEKTGSPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|310767245|gb|ADP12195.1| response regulator [Erwinia sp. Ejp617]
          Length = 219

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +   +C                          
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGIQVVGEANCGEDAVKWCRT---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  STDVVLMDMNMPGIGGLEATRKIIRYAPD--------CKIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQEVVSAIRSVNSGQRYIASDIAQQMAL-------SQLEPQKSESPFCCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K +          A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLSISGDVELTHLAIRHGL 209


>gi|256396070|ref|YP_003117634.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362296|gb|ACU75793.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 66/242 (27%), Gaps = 26/242 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +       +  L   +D L  +                    G     LVR  
Sbjct: 3   VRVLLVDDQPLMLVGLGILIGDTDDLEVVAQAAN---------------GREAVRLVREL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R                   L    F              
Sbjct: 48  HPDVVVMDIRMPGMDGIEATRQATAEPDPP--------KILVLTTFDDDEYVYGALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH---WGKDF 184
           + +   +  +  I   + ++     +I       +           K +        +  
Sbjct: 100 SGFLLKSMALDAILDAIRVVAAGDALIAPSVTRRLIADFTATPTTPKPHPEPLEHPHQIA 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE E L  + +G ++ EIA  L IS  T   ++A +  K   + R      A  + 
Sbjct: 160 QITDREREVLALVGQGLSNAEIAERLIISAATAKTHVARLFAKLEARDRVHLAIIAFESG 219

Query: 245 IV 246
           +V
Sbjct: 220 LV 221


>gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 12/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P      + ++     +             G     L +        +D  
Sbjct: 3   IRVVIADDQPLLRTGFSALVGSAPDLEVVGEAG-----DGREAVRLAKAAQADVVLMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       ++  +A +        L     L    F              + +   + + 
Sbjct: 58  MP------VLDGLAATRLITGDEDLAGVKVLILTTFEIDEYVFEALRAGASGFLGKSAEA 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTW 196
             +   +  +     ++       +           +  D    G    LT RE +   +
Sbjct: 112 DELLAAIRTVERGDALLSPAATKALISRFLTTPVAPRQLDQAQRGALDALTDRERQITGF 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++EG ++DEIA  L +S  TV  ++   M K   + R+  + +A R+ +
Sbjct: 172 VAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGARDRAQLVVFAHRSGL 220


>gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
 gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937]
          Length = 326

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 76/262 (29%), Gaps = 35/262 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVS-------WTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           TS   +   R +  AR+   D              ++Y     +G    +     + +  
Sbjct: 65  TSASRNAAMRGEPAARLAAHDSDHRGAAAFEPAFEQLYDEVRRLGFDALIYDYTPVPRSL 124

Query: 73  KLDSIVSS-----DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------- 120
           + + I  S     + P D+V     S   +   V     +   P   +            
Sbjct: 125 EGELITPSLLRTRNVPDDMVSLWCQSGYYQVDPVQIHALDSCAPFTWSYCRPENTSLRRV 184

Query: 121 -----------TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAA 167
                           M               + +  +             L  IGLLA 
Sbjct: 185 LNEQHRPVSHYMQNHNMRCGVTVPLHLPKGGFVTVTAIHTGLDTDNEIETVLARIGLLAH 244

Query: 168 YQANMFKSYDVH---WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                            +   L+ RE ECL W +EG T+ EIA  L  S  TVN ++ + 
Sbjct: 245 TFQEHVFPLFDEAWYHCRHVHLSPREQECLAWSAEGLTAKEIARKLHRSLATVNLHLNNA 304

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK     R  A+  A+   ++
Sbjct: 305 ARKLGASNRVQAVVRAMHYRLL 326


>gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 221

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 60/229 (26%), Gaps = 16/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V         LAR++                   G      +         +D  
Sbjct: 2   IRVALVDDQAIVRAGLARILSPADGFDVVAEC-----ADGQEAVERLPALRPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +              L    F                +       
Sbjct: 57  MPRLDGIAATARLRDA----DDP----AAVLVLTTFGEDDVLWGAIEAGAAGFVLKDSSA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G             +  +   +         +   LT RE + L  +
Sbjct: 109 EELIAAVRAVAGGGAWFDPGVAPR---VLDHYRRLVAPAAREGTRLELLTEREHDVLRLM 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T+ EIA  L ++  TV  ++ SI  K   + R+ AI YA  + ++
Sbjct: 166 ARGATNAEIAATLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGVI 214


>gi|312194246|ref|YP_004014307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311225582|gb|ADP78437.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 245

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 24/195 (12%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A +              L    F      +       
Sbjct: 48  SPDVVVMDVRMPGVDGIEATRRIAAAGG--------VSRVLILTTFDLDQYVLAGLRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDF-- 184
           + +       A +   +  +     ++  +    +    A +  +   S D    +    
Sbjct: 100 SGFLLKDVPPADLLTAIRTVAAGDAVVAPNVTRRLLDAFAHHLPDPDASADGGPDRPAGR 159

Query: 185 -------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + L  ++ G ++ EIA  L +S  TV  ++  I+ K   +
Sbjct: 160 VANRRTAGTDRLDRLTDRERDVLGEVAAGLSNAEIAARLVLSEATVKTHVGRILAKLELR 219

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ +A    ++
Sbjct: 220 DRVQAVVFAYETGLI 234


>gi|152970956|ref|YP_001336065.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|330001009|ref|ZP_08303869.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|150955805|gb|ABR77835.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|328537813|gb|EGF64008.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 235

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                        A     G       R +
Sbjct: 19  INVLLVDDHELVRAGIRRIL---------------EDIKGIKVAGEACCGEDAVKWCRAN 63

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S        +     +   V    P          
Sbjct: 64  SADVVLMDMNMPGIGGLEATRKIARS--------VAGTKVIMLTVHTENPLPAKVMQAGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L            +        L+
Sbjct: 116 AGYLSKGAAPQEVVNAIRCVASGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 168

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 169 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 226


>gi|304437977|ref|ZP_07397921.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368931|gb|EFM22612.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 212

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 59/226 (26%), Gaps = 18/226 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V         +  ++      + T    +     G     L+         +D  +  
Sbjct: 4   MIVDDHLLIRAGMKLLLKNTSAYTVTAEAES-----GEEALRLLAQQPIDLVIMDISMPG 58

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                 +R +          V++                          Y   T     +
Sbjct: 59  MGGLACIREIRARF-----PVVKILVLSM---HEDEEYIYKAMQYGAMGYLPKTSADNEL 110

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  L    R +  +    +  +    A               LT RE E    +  G
Sbjct: 111 FDALQALSQGRRYLSPNAQQSLMDIMFRPAEEAA-----DDPRSVLTAREREVFDELIHG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T  EIA  L +S  TV+ +   I  K     RS  +  A+RN ++
Sbjct: 166 YTITEIAERLHLSVKTVDTHKKHIYEKLHCSRRSDLVTLALRNGLL 211


>gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 211

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 75/239 (31%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +     ++  +      +        +             + R  
Sbjct: 2   IRVFLVEDHALMRAGLKKTLEKTPGITFAGEAESAEEALRTL-------------VDRKA 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +      R +  +              +   V     E  +  +   
Sbjct: 49  PVDVVVMDIGLPGESGISATRVLRQAR--------PEVRVVMYTVHRVEAEIFSSFSAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC     V  + + +         +          +A    N  +        D  L+
Sbjct: 101 DGYCLKDTTVDSLLLAIRAADMGSVYLDPA-------IAHLALNRIRLPGHPEN-DNPLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +S+G ++ EI  I GIS +TV  +I SI+ K +  TR+ A   A++  ++
Sbjct: 153 PRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIKKGLI 211


>gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
 gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
          Length = 245

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 13/227 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRC 89
             R++ +D        + A  E  G      V  +      +Q L  +V SD     +  
Sbjct: 18  APRLLLVDDEPGLRTAVQAYLEDEGFDVATAVDGEEGFTKAQQMLPDVVISDVMMPRLDG 77

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             L +K +    L     +F        +         + Y    FD   +   +  +  
Sbjct: 78  YGLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQ 137

Query: 150 KGRIILRDRLW----EIGLLAAYQ---ANMFKSYDVHWGKDFE---LTGREVECLTWISE 199
           +   +L++       ++G +A       ++    +    KD      T RE   L  ++E
Sbjct: 138 RQHRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKDPVVHSFTPREASVLQLVAE 197

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 198 GLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|302867410|ref|YP_003836047.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506180|ref|YP_004085067.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570269|gb|ADL46471.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412799|gb|ADU10916.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 227

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 65/231 (28%), Gaps = 15/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R       P        ++  +  +             G     L R  L     +D
Sbjct: 8   RPVRILLADDQPLLRTGFRMVLGAEDDLDVVGEAGD-----GVEAVELSRRLLPDVVLMD 62

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         R +  +              L    F      +         + +   
Sbjct: 63  IRMPRLDGVAATRAIVSARLP--------VRVLVLTTFEQDEHVVGSLRAGAGGFLTKDV 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   G ++    L  +  L  +   +             LT RE E LT
Sbjct: 115 PAEDLVAAIRTVAAGGAVMSPRILRRL--LDRFAQVLPDPAAAPARALEPLTDREREVLT 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++ EIA +L +S  TV  ++  ++ K   + R  A+  A    +V
Sbjct: 173 HMARGLSNAEIARLLSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYETGLV 223


>gi|16761174|ref|NP_456791.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141132|ref|NP_804474.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412856|ref|YP_149931.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|168229605|ref|ZP_02654663.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168236420|ref|ZP_02661478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168818030|ref|ZP_02830030.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194471476|ref|ZP_03077460.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736026|ref|YP_002115321.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197250575|ref|YP_002147204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197361787|ref|YP_002141423.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213028722|ref|ZP_03343169.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213051724|ref|ZP_03344602.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213418242|ref|ZP_03351308.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426294|ref|ZP_03359044.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213622209|ref|ZP_03374992.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649802|ref|ZP_03379855.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812587|ref|ZP_06543216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289824610|ref|ZP_06544153.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298773|pir||AD0787 nitrate/nitrite response regulator protein NarP STY2472 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503473|emb|CAD07478.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136758|gb|AAO68323.1| nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127113|gb|AAV76619.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194457840|gb|EDX46679.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711528|gb|ACF90749.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197093263|emb|CAR58709.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214278|gb|ACH51675.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197290466|gb|EDY29821.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|205335871|gb|EDZ22635.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344893|gb|EDZ31657.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|322615257|gb|EFY12179.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617847|gb|EFY14743.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624558|gb|EFY21389.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626991|gb|EFY23787.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634176|gb|EFY30912.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635631|gb|EFY32341.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640233|gb|EFY36897.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646344|gb|EFY42856.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649311|gb|EFY45747.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656431|gb|EFY52720.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661159|gb|EFY57386.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665703|gb|EFY61887.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667229|gb|EFY63396.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671234|gb|EFY67362.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675125|gb|EFY71202.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680733|gb|EFY76768.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686908|gb|EFY82885.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192673|gb|EFZ77900.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198895|gb|EFZ83994.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323205094|gb|EFZ90072.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208137|gb|EFZ93081.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211120|gb|EFZ95970.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215837|gb|EGA00580.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221856|gb|EGA06256.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223671|gb|EGA07980.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231283|gb|EGA15398.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233716|gb|EGA17808.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237788|gb|EGA21848.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245769|gb|EGA29763.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246491|gb|EGA30470.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252610|gb|EGA36449.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255334|gb|EGA39107.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259569|gb|EGA43204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266066|gb|EGA49559.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272760|gb|EGA56164.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 215

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 3   EVTPFQVLIVDDHPLMRRGIRQLLELDPAFYVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++              Y     + +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVN-------EYLRERER-FGAQEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|307131286|ref|YP_003883302.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Dickeya dadantii 3937]
 gi|306528815|gb|ADM98745.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Dickeya dadantii 3937]
          Length = 215

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 21/231 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D      +   P   + + +++ +   +             G     L          LD
Sbjct: 4   DAATVLLIDDHPMLRNGVKQLLSMAPDLRVVGEA-----SHGEQGVTLAEQLDPDLILLD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + +  +  +       V          V +   + I+      + Y     
Sbjct: 59  LNMPGMNGLETLARLRETPLSGRIVVF--------TVSNHEEDVISAFKSGADGYLLKDM 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
           +   + + L        ++       +           +       +D + LT RE + L
Sbjct: 111 EPEDLLVALHQAAAGKMVLSDALTPVLA-------ASLRETRSSDTRDIQQLTPREKDIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I++G  +  IA  L I+ +TV  ++  +++K   ++R  A  + V+  I
Sbjct: 164 KLIAQGLPNKVIARKLTITESTVKVHVKHLLKKMKLRSRVEAAVWVVQEKI 214


>gi|170767404|ref|ZP_02901857.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
 gi|170123738|gb|EDS92669.1| nitrate/nitrite response regulator NarP [Escherichia albertii
           TW07627]
          Length = 215

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 66/240 (27%), Gaps = 31/240 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLGLDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDIFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVSQYLHEREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A    +++
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQH 211


>gi|254381144|ref|ZP_04996509.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340054|gb|EDX21020.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 219

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  + T +  +  +                    GA    L    
Sbjct: 3   IRVLLTDDQPLVRAALQMVITDTADIEVVGEAGD---------------GAEAVRLTEEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 +    F              
Sbjct: 48  APDVVVMDLRMPGMDGIEATRLITTR--------TGSARVVVLTTFDDDDYVYGALHAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +      +  I   + ++     +I       +            +      +   +T
Sbjct: 100 SGFLVKDMALEDILSAIRIVAAGDALIAPAVTRRLI---KEFTARPAASPPRRAELGAIT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +  G ++ EIA  L IS  T   Y+  ++ K   + R   +  A    +V
Sbjct: 157 AREREVLTLVGRGLSNTEIAGELCISIATAKTYLTRLLAKLDARDRVQLVILAYEAGLV 215


>gi|256789144|ref|ZP_05527575.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 216

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 10/221 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +     +  + E   GA+   LVR        +D  +      +
Sbjct: 2   LLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVVPLVRQVRPDVVAMDVRMPLLDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +  +       V   P  L    F              + +       A I   + 
Sbjct: 62  ATRALLRT-------VADPPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVR 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           L+     ++    + ++   A Y                 LT RE E L  ++ G ++ E
Sbjct: 115 LIAEGESLLFPASVRQLA--AEYGDGGGNRAARAELARARLTEREGEVLRLMARGLSNAE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 173 IAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 213


>gi|126660738|ref|ZP_01731836.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126617979|gb|EAZ88750.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 245

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 79/262 (30%), Gaps = 38/262 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +VL  + +     +     + + +  +                    G   + ++
Sbjct: 1   MSNIRVVLIEDHDLTRIGLHAALEQINEIEVVGEAAN---------------GRKGWQVL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L + +  S   K  + L     L   +  +    +   A
Sbjct: 46  EETQPDVAIIDVGLPDIDGIELSQRLKQS---KNDSGLSNTKILILTMNTSKDTVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW---------EIGLLA--------- 166
              + Y     ++  +   + +       I               ++  LA         
Sbjct: 103 AGADSYSIKDVNLETLVNAIKVTHEGNAWIEPTVARVVLEQVQSGQLPELAVNIDTTEQN 162

Query: 167 --AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
               + +              LT +E+E L  I  G  + +IA  L ++  TV  ++ SI
Sbjct: 163 HQMREIDALDEDTQQMINSSSLTPKELEVLELIVAGCNNAQIAERLFVTVGTVKTHVRSI 222

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     R+ A   A+R+ +V
Sbjct: 223 LNKLCANDRTQAAVRALRSGLV 244


>gi|94311025|ref|YP_584235.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93354877|gb|ABF08966.1| transcriptional regulator, luxR family [Cupriavidus metallidurans
           CH34]
          Length = 217

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 72/238 (30%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S V  L  R      +                    G       +  
Sbjct: 3   IRILLIDDHTLFRSGVRALLQRQSDFEVVDEAAD---------------GVEGIKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L     +   V     E  +      
Sbjct: 48  RPDVILLDLNMPGLSGLEALQLLTED--------LPECAVIVLTVSEEGEELASALRSGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +        +I      ++  +  ++A       +  G    LT
Sbjct: 100 RGYLIKNIETEALTSAIRRAAAGEPVISDTMTAKL--VQQFKAPAAAPALLERGDAAPLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  +  G+++  IA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 158 ARERDIVRGLVRGESNKMIARALGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 215


>gi|323961963|gb|EGB57562.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
          Length = 218

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +    C         A               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              +   V    P          
Sbjct: 47  AVDVVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|320530995|ref|ZP_08032027.1| putative response regulator UvrY [Selenomonas artemidis F0399]
 gi|320136744|gb|EFW28694.1| putative response regulator UvrY [Selenomonas artemidis F0399]
          Length = 217

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 61/226 (26%), Gaps = 18/226 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             +         +  ++        T    +  E +      L+R        LD  +  
Sbjct: 5   MIIDDHLLIRAGIKLLLKNAREYRVTAEAGSAEEAL-----ALLRETPVDLVILDISMPG 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                 +R +        Y  ++                          Y   T     +
Sbjct: 60  MGGLAAIRAIGAQ-----YPAVKILVLSM---HEDEEYIYKAMQSGAMGYLPKTSADDEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  L    R +  +    +       A   +  D        LT RE E    +  G
Sbjct: 112 FDALHALAEGRRYLSPNAQQSL-----LAAMFSRPGDAEEDPRARLTEREKEVFDRLIRG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T  E A  L +S  TV+ +   I  K     RS  +A A+R+ ++
Sbjct: 167 YTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHGLL 212


>gi|308178154|ref|YP_003917560.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745617|emb|CBT76589.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 35  RMIPLDCTVSWTMRMYALT----EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R++ +D    +   + A      E  G +  +     +  EQ+ D ++            
Sbjct: 11  RVVLVDDHAIFRSGLRADLAHDIEIAGEAGTVEEAIKVIHEQQPDVVLLDVHLPGGRGGG 70

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                     +L     L   V     + +T        Y + +   A I   +  +   
Sbjct: 71  GAEVLKGCTGLLGSTRFLALSVSDAAQDVVTVIRSGARGYVTKSISGAEISDAVRRVAGG 130

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEGKTSDEIA 207
             +           LA +  + F S       D EL   + RE++ +  I+ G +  E+A
Sbjct: 131 DAVFSPR-------LAGFVLDAFGSSTPVAEIDEELDLLSDRELQVMRLIARGYSYKEVA 183

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV +++++++RK     R     +AV   I+
Sbjct: 184 KELFISVKTVESHVSNVLRKLQLSNRHELTRWAVDRKIL 222


>gi|15802746|ref|NP_288773.1| transcriptional regulator NarP [Escherichia coli O157:H7 EDL933]
 gi|15832336|ref|NP_311109.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749599|ref|ZP_02774621.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|168754943|ref|ZP_02779950.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|168764687|ref|ZP_02789694.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|168767816|ref|ZP_02792823.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|168773087|ref|ZP_02798094.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|168780045|ref|ZP_02805052.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|168789011|ref|ZP_02814018.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|168802408|ref|ZP_02827415.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|195935573|ref|ZP_03080955.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807826|ref|ZP_03250163.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208812712|ref|ZP_03254041.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208820974|ref|ZP_03261294.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209398167|ref|YP_002271605.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|217326666|ref|ZP_03442749.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254794092|ref|YP_003078929.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223349|ref|ZP_05937630.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259101|ref|ZP_05951634.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283444|ref|YP_003500262.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|12516525|gb|AAG57328.1|AE005452_1 nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362551|dbj|BAB36505.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. Sakai]
 gi|187771336|gb|EDU35180.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4196]
 gi|188016073|gb|EDU54195.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4113]
 gi|189002090|gb|EDU71076.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4076]
 gi|189357613|gb|EDU76032.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4401]
 gi|189362901|gb|EDU81320.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4486]
 gi|189365348|gb|EDU83764.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4501]
 gi|189371341|gb|EDU89757.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC869]
 gi|189375588|gb|EDU94004.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC508]
 gi|208727627|gb|EDZ77228.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4206]
 gi|208733989|gb|EDZ82676.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4045]
 gi|208741097|gb|EDZ88779.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4042]
 gi|209159567|gb|ACI37000.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. EC4115]
 gi|209765848|gb|ACI81236.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765850|gb|ACI81237.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765852|gb|ACI81238.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765854|gb|ACI81239.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|209765856|gb|ACI81240.1| nitrate/nitrite response regulator NarP [Escherichia coli]
 gi|217319033|gb|EEC27458.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7
           str. TW14588]
 gi|254593492|gb|ACT72853.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763317|gb|ADD57278.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7
           str. CB9615]
 gi|320192180|gb|EFW66825.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|320641261|gb|EFX10739.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           G5101]
 gi|320646534|gb|EFX15450.1| transcriptional regulator NarP [Escherichia coli O157:H- str.
           493-89]
 gi|320651905|gb|EFX20280.1| transcriptional regulator NarP [Escherichia coli O157:H- str. H
           2687]
 gi|320657630|gb|EFX25428.1| transcriptional regulator NarP [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663086|gb|EFX30399.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667986|gb|EFX34889.1| transcriptional regulator NarP [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339547|gb|EGD63358.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1125]
 gi|326344008|gb|EGD67769.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1044]
          Length = 215

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHEREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|302557670|ref|ZP_07310012.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475288|gb|EFL38381.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
          Length = 222

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +      +  +   +           L               
Sbjct: 3   IKVLLADDQAMIRRGLRLILEDQPDITVVGEAEDGAEAIAMARRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++ R +A                +    F           G  
Sbjct: 48  RPDVCLVDIRMPKLDGIEVTRALA--GPKAADP----MRVIVVTTFDLDEYVYGALRGGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A +   +        ++       +     +             +  EL+
Sbjct: 102 AGFVLKDAGPALLIEAVRAACNGEALVSPSVTLRL---LKHLNESQAMPRGGAARSSELS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GR +E +  I+ G+T+ EIA  L IS +TV ++++ I  K   + R+    +A  N +V
Sbjct: 159 GRALEVVQAIARGRTNQEIAAELFISLSTVKSHLSGIQTKLGVRNRTEIAVWAWENRVV 217


>gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 209

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       ++ L    D +  +                    GA+   L R  
Sbjct: 6   IRILLVDDHAILREGLAALLNGVDGMQVIGQAGD---------------GATAIDLYRNL 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L      D  +      ++   +                 +    + T  E         
Sbjct: 51  LPDVVICDLRMVPMDGTEVTSTIRAE--------FPAARVILLTTYDTDEEVFRGLRAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     + A++   +  ++   + I      ++   A + A+              LT
Sbjct: 103 SSYLLKDVEPAQLIDTVHAVYAGRKAIDPSIAAKL---AEHVASDA------------LT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R++E L  ++EG+++ EIA  L IS  TV  +I +I++K   + R+ A+   ++  ++
Sbjct: 148 ARQLEVLRSLAEGRSNIEIANTLYISEGTVKAHIKAILQKLGARDRTQAVTIGIKRGLI 206


>gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli GR56]
          Length = 233

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 15/226 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDL 86
            +S L A +        +   +  ++   G SH  L+     ++  L  ++  S  P   
Sbjct: 6   RQSLLSAELAVAGTRGLFAQALGRVSAAFGLSHATLMHAPSPEDLLLKPLLIESSLPAAY 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLT 134
           VR    +   +      R  E   P+   L               +     +       T
Sbjct: 66  VRDFDRANMMRGCPFGLRLRESAVPLAWHLNDAVNGQAFPAELRALMLHHAIPAGVAMPT 125

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVEC 193
             V   R+       +   + +  + E+ ++  +  + + +   +       L+ RE+E 
Sbjct: 126 IAVDGRRLVFWFCG-ERAALGQSEVNELAIIILHALDAYNTVRRNEESVHNALSARELEV 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A 
Sbjct: 185 VRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 230


>gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6]
          Length = 215

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRTGAKGNKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|326793852|ref|YP_004311672.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326544616|gb|ADZ89836.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 217

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 20/236 (8%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + LNR ++Q    V ++    D L  +  L   +     +      VG ++  L   +  
Sbjct: 1   MTLNRNNKQ----VINIMLVDDHLLVLDGLYARLDLEDYI----NIVGTANNGLEALEKA 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +E K D ++       L    A    +      +          H     ++      + 
Sbjct: 53  KELKPDVVLMDVSMPVLNGLEAAKRFNAEQPNTKILMLSM---HHDREYILSLLQSGASG 109

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      V  +   +  ++  G          + +    +++              LT R
Sbjct: 110 YVLKDVSVNELITAIETVYQGGTYFSAGASQSLFVAVEKESDTQAEA---------LTKR 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  ++ G+ + E+A  L IS  TV  +  +I  K    T +G   YA+   +
Sbjct: 161 ETDVLVELASGRANKEVARSLNISVRTVETHRQNIKNKLNIHTTAGLTKYAIDKGL 216


>gi|284008488|emb|CBA74985.1| two-component system, NarL family, nitrate/nitrite response
           regulator [Arsenophonus nasoniae]
          Length = 206

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 34/232 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +   +I+L  E       +  L   +   + +  +   +                   + 
Sbjct: 1   MSNHSIMLVDEHPLIRHSLKQLIKAAHEFSVVAEVSNGIDVIN---------------IA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +S+ +  +++R +             +   L         +      
Sbjct: 46  NQLKPDIIMMDINISNMYGPEVIRQIRKEGI--------KSYILILSFSANRIDVYNAID 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y     ++  +   L                 + + +        +   +     
Sbjct: 98  AGANGYLLKNCELDMLVNSLKSAANG-----------LPVFSNQIHQYLNNRHQYQDPLS 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            LT RE E L  I+ G  + EI+  L IS  TV  +I ++++K   ++R  A
Sbjct: 147 SLTKREFEVLREIANGLKNREISKYLFISEETVKVHIRNLLKKLNVRSRLEA 198


>gi|258622635|ref|ZP_05717656.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
 gi|258585091|gb|EEW09819.1| transcriptional regulator, LuxR family [Vibrio mimicus VM573]
          Length = 227

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D                           
Sbjct: 15  ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRT---------------- 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++       +    A  +  +    ++    +   V    P          
Sbjct: 59  ----NHADVVLMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 112 AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 164 ERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 222


>gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C]
 gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C]
          Length = 220

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 58/219 (26%), Gaps = 11/219 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    +  + E   G     L R         D  +     
Sbjct: 4   RVLVADDQTIVRTGLRIMLNAQPGIEVVGEAADGREAVRLARELRPDVCLFDIRMPGLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V+          F                +         +   
Sbjct: 64  LEATRLVAGPGVADPLAVV------VITTFDLDEYVYGSLRAGARGFLLKDTGPDLLAQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +            +          +T RE + L  ++ G T+
Sbjct: 118 VRSASDGEALIAPSVTVRL----LRAFADLPAGRPVAQPVSPVTAREEQVLLAVARGLTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EIA  L IS +TV  ++AS+M K   + R     +A  
Sbjct: 174 TEIADALRISLSTVKTHLASLMAKLGARNRVEIAMWAYE 212


>gi|16129861|ref|NP_416424.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. MG1655]
 gi|24113291|ref|NP_707801.1| response regulator [Shigella flexneri 2a str. 301]
 gi|30063358|ref|NP_837529.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|74311740|ref|YP_310159.1| response regulator [Shigella sonnei Ss046]
 gi|82543618|ref|YP_407565.1| response regulator [Shigella boydii Sb227]
 gi|89108749|ref|AP_002529.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. W3110]
 gi|157156123|ref|YP_001463217.1| response regulator [Escherichia coli E24377A]
 gi|170081562|ref|YP_001730882.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683562|ref|YP_001743330.1| response regulator [Escherichia coli SMS-3-5]
 gi|187731168|ref|YP_001879702.1| response regulator [Shigella boydii CDC 3083-94]
 gi|188492627|ref|ZP_02999897.1| response regulator UvrY [Escherichia coli 53638]
 gi|191168291|ref|ZP_03030084.1| response regulator UvrY [Escherichia coli B7A]
 gi|193066390|ref|ZP_03047438.1| response regulator UvrY [Escherichia coli E22]
 gi|193071129|ref|ZP_03052053.1| response regulator UvrY [Escherichia coli E110019]
 gi|194429924|ref|ZP_03062434.1| response regulator UvrY [Escherichia coli B171]
 gi|194439584|ref|ZP_03071657.1| response regulator UvrY [Escherichia coli 101-1]
 gi|209919335|ref|YP_002293419.1| response regulator [Escherichia coli SE11]
 gi|218554497|ref|YP_002387410.1| response regulator [Escherichia coli IAI1]
 gi|218695520|ref|YP_002403187.1| response regulator [Escherichia coli 55989]
 gi|238901123|ref|YP_002926919.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli BW2952]
 gi|253773134|ref|YP_003035965.1| response regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|256017889|ref|ZP_05431754.1| response regulator [Shigella sp. D9]
 gi|256022428|ref|ZP_05436293.1| response regulator [Escherichia sp. 4_1_40B]
 gi|260844318|ref|YP_003222096.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O103:H2 str. 12009]
 gi|293446296|ref|ZP_06662718.1| two-component system [Escherichia coli B088]
 gi|300818663|ref|ZP_07098871.1| response regulator UvrY [Escherichia coli MS 107-1]
 gi|300822315|ref|ZP_07102456.1| response regulator UvrY [Escherichia coli MS 119-7]
 gi|300917355|ref|ZP_07134024.1| response regulator UvrY [Escherichia coli MS 115-1]
 gi|300925005|ref|ZP_07140929.1| response regulator UvrY [Escherichia coli MS 182-1]
 gi|301029364|ref|ZP_07192461.1| response regulator UvrY [Escherichia coli MS 196-1]
 gi|301327703|ref|ZP_07220909.1| response regulator UvrY [Escherichia coli MS 78-1]
 gi|301645569|ref|ZP_07245498.1| response regulator UvrY [Escherichia coli MS 146-1]
 gi|307138580|ref|ZP_07497936.1| response regulator [Escherichia coli H736]
 gi|309795977|ref|ZP_07690390.1| response regulator UvrY [Escherichia coli MS 145-7]
 gi|312973876|ref|ZP_07788048.1| response regulator [Escherichia coli 1827-70]
 gi|331642535|ref|ZP_08343670.1| response regulator UvrY [Escherichia coli H736]
 gi|331653320|ref|ZP_08354325.1| response regulator UvrY [Escherichia coli M718]
 gi|331668607|ref|ZP_08369455.1| response regulator UvrY [Escherichia coli TA271]
 gi|331677798|ref|ZP_08378473.1| response regulator UvrY [Escherichia coli H591]
 gi|331683465|ref|ZP_08384066.1| response regulator UvrY [Escherichia coli H299]
 gi|332278916|ref|ZP_08391329.1| DNA-binding response regulator in two-component system response
           regulatory system with BarA [Shigella sp. D9]
 gi|83288180|sp|P0AED5|UVRY_ECOLI RecName: Full=Response regulator uvrY
 gi|83288181|sp|P0AED6|UVRY_SHIFL RecName: Full=Response regulator uvrY
 gi|551848|gb|AAA24755.1| 24 kD protein (ttg start codon) [Escherichia coli]
 gi|581252|emb|CAA28982.1| unnamed protein product [Escherichia coli]
 gi|1736573|dbj|BAA15734.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K12 substr. W3110]
 gi|1788222|gb|AAC74981.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. MG1655]
 gi|24052298|gb|AAN43508.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30041610|gb|AAP17338.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|73855217|gb|AAZ87924.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
 gi|81245029|gb|ABB65737.1| putative 2-component transcriptional regulator [Shigella boydii
           Sb227]
 gi|157078153|gb|ABV17861.1| response regulator UvrY [Escherichia coli E24377A]
 gi|169889397|gb|ACB03104.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521280|gb|ACB19458.1| response regulator UvrY [Escherichia coli SMS-3-5]
 gi|187428160|gb|ACD07434.1| response regulator UvrY [Shigella boydii CDC 3083-94]
 gi|188487826|gb|EDU62929.1| response regulator UvrY [Escherichia coli 53638]
 gi|190901663|gb|EDV61419.1| response regulator UvrY [Escherichia coli B7A]
 gi|192925975|gb|EDV80621.1| response regulator UvrY [Escherichia coli E22]
 gi|192955524|gb|EDV86003.1| response regulator UvrY [Escherichia coli E110019]
 gi|194412013|gb|EDX28325.1| response regulator UvrY [Escherichia coli B171]
 gi|194421493|gb|EDX37507.1| response regulator UvrY [Escherichia coli 101-1]
 gi|209912594|dbj|BAG77668.1| two-component response regulator [Escherichia coli SE11]
 gi|218352252|emb|CAU98008.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli 55989]
 gi|218361265|emb|CAQ98849.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli IAI1]
 gi|238860856|gb|ACR62854.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli BW2952]
 gi|253324178|gb|ACT28780.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|257759465|dbj|BAI30962.1| DNA-binding response regulator UvrY in two-component regulatory
           system with BarA [Escherichia coli O103:H2 str. 12009]
 gi|260448969|gb|ACX39391.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|281601356|gb|ADA74340.1| Response regulator uvrY [Shigella flexneri 2002017]
 gi|291323126|gb|EFE62554.1| two-component system [Escherichia coli B088]
 gi|299877790|gb|EFI86001.1| response regulator UvrY [Escherichia coli MS 196-1]
 gi|300415401|gb|EFJ98711.1| response regulator UvrY [Escherichia coli MS 115-1]
 gi|300418840|gb|EFK02151.1| response regulator UvrY [Escherichia coli MS 182-1]
 gi|300525198|gb|EFK46267.1| response regulator UvrY [Escherichia coli MS 119-7]
 gi|300528835|gb|EFK49897.1| response regulator UvrY [Escherichia coli MS 107-1]
 gi|300845747|gb|EFK73507.1| response regulator UvrY [Escherichia coli MS 78-1]
 gi|301076101|gb|EFK90907.1| response regulator UvrY [Escherichia coli MS 146-1]
 gi|308120427|gb|EFO57689.1| response regulator UvrY [Escherichia coli MS 145-7]
 gi|309702209|emb|CBJ01525.1| response regulator [Escherichia coli ETEC H10407]
 gi|310332471|gb|EFP99706.1| response regulator [Escherichia coli 1827-70]
 gi|313650131|gb|EFS14544.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|315061214|gb|ADT75541.1| DNA-binding response regulator in two-component regulatory system
           with BarA [Escherichia coli W]
 gi|315136551|dbj|BAJ43710.1| response regulator [Escherichia coli DH1]
 gi|320176083|gb|EFW51151.1| response regulator [Shigella dysenteriae CDC 74-1112]
 gi|320178184|gb|EFW53161.1| response regulator [Shigella boydii ATCC 9905]
 gi|320198607|gb|EFW73207.1| response regulator [Escherichia coli EC4100B]
 gi|323378209|gb|ADX50477.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323948205|gb|EGB44193.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323972723|gb|EGB67924.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324017949|gb|EGB87168.1| response regulator UvrY [Escherichia coli MS 117-3]
 gi|324118968|gb|EGC12857.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331039333|gb|EGI11553.1| response regulator UvrY [Escherichia coli H736]
 gi|331049418|gb|EGI21490.1| response regulator UvrY [Escherichia coli M718]
 gi|331063801|gb|EGI35712.1| response regulator UvrY [Escherichia coli TA271]
 gi|331074258|gb|EGI45578.1| response regulator UvrY [Escherichia coli H591]
 gi|331079680|gb|EGI50877.1| response regulator UvrY [Escherichia coli H299]
 gi|332096759|gb|EGJ01750.1| response regulator [Shigella boydii 3594-74]
 gi|332101268|gb|EGJ04614.1| DNA-binding response regulator in two-component system response
           regulatory system with BarA [Shigella sp. D9]
 gi|332343639|gb|AEE56973.1| response regulator [Escherichia coli UMNK88]
          Length = 218

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +    C                         +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRT---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S              +   V    P          
Sbjct: 47  AVDVVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca
           acetoxidans DSM 11109]
          Length = 222

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   +++  +       +  +   +  L  +      V     +               
Sbjct: 1   MKPYTLIIADDHVMFRQGIRKIINANPALKIIGEASNGVELLEMLKQTV----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +  + +             +   L   +  +        +
Sbjct: 50  ----PDLILLDISMPQIQGLEAAKEIKKR--------YPKLKILILTMHKSNEYLNYALS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +  +G  I      ++  L           D     + 
Sbjct: 98  VGADGYLLKEDADTELFSAIDTIRQQGTYISPLLSPQLKDLLL----RKYREDRSQFPED 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EGK+S EI  +L IS  TV ++ A++MRK   +  +  + YA++  
Sbjct: 154 PLTKREKEILRLIAEGKSSKEIGAVLFISSRTVEHHRANMMRKLGCRKIAELVRYAIQKG 213

Query: 245 I 245
            
Sbjct: 214 Y 214


>gi|325964186|ref|YP_004242092.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470273|gb|ADX73958.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 229

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 76/243 (31%), Gaps = 31/243 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V +V+  +     S +         +  +                          ++ 
Sbjct: 16  QPVRVVIVDDHAIFRSGLKADL--DPSIQVVGEAATVEQ---------------AVAVIA 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +  +   LD  +           +A S       +L     L   V     + +     
Sbjct: 59  QERPEVVLLDVHLPGGLGGGGREVIAGS-----AALLPTTRFLALSVSDAAEDVVAVIRA 113

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKD 183
               Y + T   A I   +  +     +           LA +  + F     D+   + 
Sbjct: 114 GARGYVTKTISGAEITDAVYRVAGGDAVFSPR-------LAGFVLDAFGTAPADIADDEL 166

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ RE+E +  I+ G +  E+A  L IS  TV  ++++++RK    +R     +A   
Sbjct: 167 DKLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRKLQLSSRHELTKWAAER 226

Query: 244 NIV 246
            ++
Sbjct: 227 RLL 229


>gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 235

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 18/195 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +         R +                 L    F         
Sbjct: 42  LALDLRPDIVLMDVRMPETDGVQATRRICAERPG-------HTRILMLTTFDLDEYVYAS 94

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-----------AAYQAN 171
                + +       A +   +  +     ++       +                    
Sbjct: 95  LRAGASGFLLKDTLAADLLSAIRTVAAGDAVVAPSVTRRLLERFVGTNTAGASPTGTTGT 154

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          LT RE E L  ++ G ++ EIA  + I   TV  +++ I+ K   +
Sbjct: 155 TGTASLASALAADTLTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAKLDLR 214

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+ YA  + +V
Sbjct: 215 DRVQAVVYAYESGLV 229


>gi|74317417|ref|YP_315157.1| transcriptional regulator NarL [Thiobacillus denitrificans ATCC
           25259]
 gi|74056912|gb|AAZ97352.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 219

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 19/227 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D Q    V   P     + ++I       +           G     L          LD
Sbjct: 5   DPQTILIVDDHPLFRKGVIQLIQAAPEFRFVGEA-----ASGGEGLTLAHRLHPDMILLD 59

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      ++++ +     D           +   V     + I       + Y     
Sbjct: 60  LNMKDMNGVEVLKAIKDEGLD--------SRVIMLTVSDQAEDLIAALQAGADGYLLKDM 111

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   L         I       +       +++ +        D  LT +E   L 
Sbjct: 112 EPEDLMQQLAEAARGKITISEGLTQLL------VSSLREKTRPTSLADAGLTEQENRILD 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +GK++  IA  +GI+  TV  ++  +++K   ++R  A  +A R
Sbjct: 166 HLVDGKSNKLIARDMGIAEGTVKVHVKHLLKKLNLRSRVEAAVWADR 212


>gi|72162981|ref|YP_290638.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916713|gb|AAZ56615.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 233

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 66/225 (29%), Gaps = 16/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D       +         +  + E         ++         LD  +   
Sbjct: 24  IPRIVIVDDHHLFRSGVR--GELGDTVDVVGEAGDVDEAVRVISEQRPDLVLLDVHLPGG 81

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++R +                 L   V     + I         Y + T     + 
Sbjct: 82  GGIEVLRRIL--------PKHPEIRFLALSVSDAAEDVIGVIRAGARGYVTKTISGTELA 133

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++ +     +        +  L A+ A      D    +   LT RE E L  I+ G 
Sbjct: 134 DAIVRVADGDAVFSPRLAGFV--LDAFAATDAPPVDPELDR---LTQREREVLRLIARGY 188

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              E+A  L IS  TV  +++S++RK     R     +A    +V
Sbjct: 189 AYKEVARELFISVKTVETHVSSVLRKLQLSNRHELSRWATARKLV 233


>gi|169634637|ref|YP_001708373.1| response regulator [Acinetobacter baumannii SDF]
 gi|169797497|ref|YP_001715290.1| response regulator [Acinetobacter baumannii AYE]
 gi|184156579|ref|YP_001844918.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213155689|ref|YP_002317734.1| response regulator [Acinetobacter baumannii AB0057]
 gi|215484933|ref|YP_002327172.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|260551084|ref|ZP_05825288.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260556389|ref|ZP_05828608.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|301346538|ref|ZP_07227279.1| response regulator [Acinetobacter baumannii AB056]
 gi|301512072|ref|ZP_07237309.1| response regulator [Acinetobacter baumannii AB058]
 gi|301594838|ref|ZP_07239846.1| response regulator [Acinetobacter baumannii AB059]
 gi|169150424|emb|CAM88321.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Acinetobacter baumannii AYE]
 gi|169153429|emb|CAP02566.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Acinetobacter baumannii]
 gi|183208173|gb|ACC55571.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Acinetobacter baumannii ACICU]
 gi|193076104|gb|ABO10711.2| response regulator [Acinetobacter baumannii ATCC 17978]
 gi|213054849|gb|ACJ39751.1| response regulator [Acinetobacter baumannii AB0057]
 gi|213987818|gb|ACJ58117.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|260405851|gb|EEW99339.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260410444|gb|EEX03743.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|322506466|gb|ADX01920.1| gacA [Acinetobacter baumannii 1656-2]
 gi|323516345|gb|ADX90726.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
          Length = 211

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     +VR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDHADVEVIGQAES---------------GEEAIAIVRQQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  +              +        P          
Sbjct: 47  HPQVVLLDVNMPGIGGVETTRRLLQTA--------PETKVIAVSGLAEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPIAEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K    +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLI 209


>gi|301328679|ref|ZP_07221739.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
 gi|300844929|gb|EFK72689.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 78-1]
          Length = 216

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 31/235 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A  
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATI 216


>gi|271500030|ref|YP_003333055.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270343585|gb|ACZ76350.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 218

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      L  +    C                         +
Sbjct: 2   ISVFLVDDHELVRAGIRRILDDIKGLKVVGEAQCGEDAVRWCR---------------NN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       +   ++    +   ++   P          
Sbjct: 47  SVDVVLMDMNMPGIGGLEATRKIVR-----FSPEIK---VIMLTIYTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + Y S       +   +  +    R I  D   ++ L            +       E L
Sbjct: 99  SGYLSKGATPEEVICAIRSVHAGKRYIASDIAQQMAL---------SQLEPQTETPLECL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMIMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIRHGL 208


>gi|239941299|ref|ZP_04693236.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239987762|ref|ZP_04708426.1| two component system response regulator [Streptomyces roseosporus
           NRRL 11379]
 gi|291444739|ref|ZP_06584129.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347686|gb|EFE74590.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 222

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +  T  +  + E   GA     VR        +D  +     
Sbjct: 4   RVVLADDQTVVRAGFRALLDLTDDLVVVAEAADGARAVEAVRTTRPDVVLMDIRMPGVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L +   +    +                +     +   +R  
Sbjct: 64  LEATRRIAG------DRSLDQVRVVMLTTYQVDAYVFEALRHGAAGFLLKDIEPDDLRSA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +       A +         +   LTGRE E +  ++ G ++
Sbjct: 118 IRTVAAGRSLLAPAVTRRVI---EEFARLKAPEAAGAERLAVLTGREREVMALVAAGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EI   L +S  T   +++  M K   + R+  +  A    +V
Sbjct: 175 EEIGRALIMSPLTAKTHVSRTMTKLGARDRAQLVVMAYETGLV 217


>gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 215

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     M  + E   G     L R    Q   LD  +      
Sbjct: 5   VLIADDQQMVRAGFRMIIDSQPDMRVVAEARDGVEAVALARRLRPQVCLLDIRMPRMDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +A                +    F           G    +       A +   +
Sbjct: 65  EATRLLA--GPQVPDP----LRVVIVTTFDLDEYVYAALRGGATGFLLKDSRPALLVEAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +       A++ +           LT RE++ +  ++ G+T++
Sbjct: 119 RAAVRGDALVSPSVTVRL------LAHLTRPQRPARRPAEPLTERELQVVRLVARGRTNE 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S +TV  ++ ++ RK A + R    A+A  + IV
Sbjct: 173 EIAGELFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWESGIV 214


>gi|326559661|gb|EGE10074.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 46P47B1]
 gi|326559921|gb|EGE10320.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 103P14B1]
 gi|326561209|gb|EGE11574.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 7169]
 gi|326566300|gb|EGE16451.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 12P80B1]
 gi|326567904|gb|EGE18001.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC1]
 gi|326569517|gb|EGE19577.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC8]
 gi|326572718|gb|EGE22704.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis BC7]
 gi|326573892|gb|EGE23844.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis 101P30B1]
 gi|326577343|gb|EGE27230.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis O35E]
          Length = 218

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 17/219 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D       L   +S    +  + E   G     ++  ++     LD  +    
Sbjct: 12  ARLLLVDDHPMLRRGLADLLSLEKDVQVIAEANHGMEALDILNQEIVDLVILDHTMPILN 71

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +             +   L   V     +         + Y     +  +I  
Sbjct: 72  GIETLKKIRELGI--------QTKVLLFTVSDNSKDVQDALHLGVDGYLLKDMEPEQIIT 123

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     +I       +               V      ELT RE++    I++G +
Sbjct: 124 DIRKILCGELVISPSLAPILA--------QAMRKPVKTDSSHELTEREIQVAKMIAQGMS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  I   LGI+ +TV  ++  I+ K   +TR     +AV
Sbjct: 176 NKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214


>gi|262274271|ref|ZP_06052082.1| BarA-associated response regulator UvrY [Grimontia hollisae CIP
           101886]
 gi|262220834|gb|EEY72148.1| BarA-associated response regulator UvrY [Grimontia hollisae CIP
           101886]
          Length = 214

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  L      +  +   +          +               +
Sbjct: 2   ISVFLVDDHELVRTGIRRLLEDERGVKVVGEAESGEEAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  HADIILMDMNMPGIGGLEATRKLLRYNPD--------AKIIVLTIHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    R I  +   ++ L         +           L+
Sbjct: 99  AGYLTKGAGANEMVNAIRAVSSGQRYISPEIAQQMAL--------SQFSPAQENPFKNLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLGINGDVELTHLAIRHGML 209


>gi|264678688|ref|YP_003278595.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262209201|gb|ACY33299.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 223

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 71/241 (29%), Gaps = 24/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V + L  +D      ++           +                 +       ++  
Sbjct: 7   QPVRVFLVDDDSHIRRVIAQDLMGDSRTLLVGHACS----LREARKSIQQHDFDVLMI-- 60

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      DL+  +  +              +   V     +       
Sbjct: 61  ---------DLNLGDGEGLDLLELVQGTH--------PHVQSIIVSVTERDEKVFQAFEK 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y             ++ +   G  I      +I  L +              K+ +
Sbjct: 104 GAVGYLLKNSWFGDYAQAVLQVANGGASITPSLAKKILSLVSRSQTYVVPASNL-SKEEK 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I+ G +S EI+  L IS  TV+ ++ ++ RK   KTR+ A+  A    +
Sbjct: 163 LSEREIEILKLIACGYSSPEISTQLKISTMTVSTHVKNMYRKLQAKTRAHAVKAASLRGL 222

Query: 246 V 246
           +
Sbjct: 223 I 223


>gi|237731960|ref|ZP_04562441.1| response regulator [Citrobacter sp. 30_2]
 gi|283832686|ref|ZP_06352427.1| response regulator UvrY [Citrobacter youngae ATCC 29220]
 gi|226907499|gb|EEH93417.1| response regulator [Citrobacter sp. 30_2]
 gi|291072362|gb|EFE10471.1| response regulator UvrY [Citrobacter youngae ATCC 29220]
          Length = 218

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +  +                    G       R +
Sbjct: 2   INVFLVDDHELVRAGIRRILEDIKGIKVVGEA---------------CCGEDAVKWCRSN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   V    P          
Sbjct: 47  SVDVVLMDMNMPGIGGLEATRKIARSTADI--------KVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|222152374|ref|YP_002561549.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113185|emb|CAR40638.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 226

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 76/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  + +    +     +         +                  
Sbjct: 2   IKVMIADDQELIRESLKIVLSTHKDIVVTASVSDGFQVLEALEK---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               +  D I+       +   +   E  K Y  ++    +    F       +      
Sbjct: 46  ----ELPDVILMDIRMPKMDGVVCTKEVKKRYPTIKI---IILTTFDDDEFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +F  G +I  D   ++    +    +  +  V   +   L+
Sbjct: 99  SGYLLKGVSMEELHQAIQTVFNGGAMINPDIAIKVFKAFSELPTLNNTIKVFEDEVESLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  +  G ++ EIA  L +S  TV NY+++++ K   + R+    ++V+  
Sbjct: 159 KAEWKIIQQVGFGLSNREIAQKLFLSEGTVRNYLSNVLAKLQLRDRTQLAIWSVQTG 215


>gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 214

 Score =  115 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 23/232 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           +     V       + L  +I    +              G      +         +D 
Sbjct: 2   KHNVLIVDDHFVVREGLKLIIETSDSFQIIGEA-----ANGEEALSFIEKKKPDVILMDL 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + +  +   +             +    ++     +         Y     D
Sbjct: 57  NMPKMSGLETIEALNKKQN--------HTPIIILTTYNEDELMLKGIELGAKGYLLKDTD 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECL 194
              +   L        ++  + + +I          +K  +VH  K  E  LT +E+  L
Sbjct: 109 RENLFRTLEAAIRGEILLQPNIMEKIV--------KYKRKEVHADKVAENNLTDKELFVL 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ G  + EIA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 161 KAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 212


>gi|291482971|dbj|BAI84046.1| hypothetical protein BSNT_00932 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 213

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + L  +I  +   +            G     L          +D  + 
Sbjct: 4   VLIVDDHLVVREGLKLLIETNDQYTIIGEAEN-----GKVAVRLADELEPDIILMDLYMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + ++ +                 +    ++     I         Y         
Sbjct: 59  EMSGLEAIKQIKEKHDTPI---------IILTTYNEDHLMIEGIELGAKGYLLKDTSSET 109

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        ++  D L  +  +        K        + +LT +EV  L  I++
Sbjct: 110 LFHTMDAAIRGNVLLQPDILKRLQEIQ---FERMKKQRS----ETQLTEKEVIVLKAIAK 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S  IA  L +S  TV + + SI  K    +R+ A+  A++  I+
Sbjct: 163 GLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGIL 209


>gi|300361177|ref|ZP_07057354.1| two component system response regulator [Lactobacillus gasseri
           JV-V03]
 gi|300353796|gb|EFJ69667.1| two component system response regulator [Lactobacillus gasseri
           JV-V03]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 10/196 (5%)

Query: 51  ALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           ++T+ VG    +L   +        +D  +       +       +             +
Sbjct: 31  SVTDTVGNGKEVLASIEKNKPDIILMDVRMPIMDGT-VCTKYVKEKYPDI-------KVI 82

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F       +      + Y       A +   +  +   G +I  D   ++  L + 
Sbjct: 83  ILTTFDDDDFIFSALKYGASGYLLKGGSPADLFTSIRTVAQGGAMINPDITEKVFRLFSK 142

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    +  V+  +  + +  E   +  +  G ++ EIA  L +S  TV NYI+ I+ K 
Sbjct: 143 MAQSNYAISVNDKETKDFSKSEWCVIQQVGLGLSNKEIAAKLFLSEGTVRNYISKILEKL 202

Query: 229 ATKTRSGAIAYAVRNN 244
             + R+    +AV+  
Sbjct: 203 DLRDRTQLAIWAVQTG 218


>gi|226305790|ref|YP_002765750.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226184907|dbj|BAH33011.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 212

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 13/219 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L    +    M    E   G     L          +D  +      
Sbjct: 4   VLIVDDQRLVRAGLRMLCAAAEDMAVAGEASNGVEAVALAAELDPDVILMDLRMPGLDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +  +         +R   L    F          A   + +     + A +   +
Sbjct: 64  GATQQIVKAG--------RRARILVLTTFDDDDHLYPALAAGASGFFVKDTEPAELLGAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +   + L  +   A          D    +   LT RE + L  ++EGK++ 
Sbjct: 116 RRVAEGEMVFTPELLRRVVDRAVIGG----IADTAVTESVPLTDRESQVLALVAEGKSNQ 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L +   TV  ++A++M KT    R     Y ++N
Sbjct: 172 EIADTLHLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210


>gi|254383084|ref|ZP_04998438.1| two-component system DNA-binding response regulator [Streptomyces
           sp. Mg1]
 gi|194341983|gb|EDX22949.1| two-component system DNA-binding response regulator [Streptomyces
           sp. Mg1]
          Length = 235

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 77/245 (31%), Gaps = 26/245 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E ++V +VL  +     + V                   V        + +        +
Sbjct: 15  EARRVRVVLVDDHRMFRTGVQAEIG--------ETARTGVEVVGEAADVDQA-----VTV 61

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     +   LD  +      +++R  A       + V      L   V     + I   
Sbjct: 62  ITATRPEVVLLDVHLPGGGGVEVLRRCAPLMSAAEHPV----RFLALSVSDAAEDVIGVI 117

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G    Y + T     +   +  +     +           LA +  + F S D     +
Sbjct: 118 RGGARGYVTKTITGTDLVDSVFRVQDGDAVFSPR-------LAGFVLDAFASTDAPPVDE 170

Query: 184 F--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A 
Sbjct: 171 DLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWAT 230

Query: 242 RNNIV 246
              +V
Sbjct: 231 ARRLV 235


>gi|89092858|ref|ZP_01165810.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
 gi|89082883|gb|EAR62103.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
          Length = 214

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 63/219 (28%), Gaps = 18/219 (8%)

Query: 29  RSDLLARMIPLDCTV-SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           + +       L    G   + L + D      +D  +      +  
Sbjct: 6   ADDHAVVRQGYASLLSAMLAPCEVLEAGNGDQAYSLCQSDSPDVVIMDVNMQGISGIEAT 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +   +        +         +  +P            Y + +     +   +  +
Sbjct: 66  RRILQKK-----PDTRILFFSM---YDEIPVVTQALEAGAKGYITKSCTPEILIEAVKKV 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +  +    + +            +    +  E+T RE E    +++G    EI+
Sbjct: 118 SAGQLYVEHELAMRLAV---------SRPEQKDKRLKEMTQREFEIFVMLAQGSNVKEIS 168

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV+NY A +  K    + +  +  A+   +V
Sbjct: 169 EQLCISSKTVSNYTAILKSKLNIGSTAELVHLAIETGLV 207


>gi|304413478|ref|ZP_07394951.1| UvrY transcriptional regulator [Candidatus Regiella insecticola
           LSR1]
 gi|304284321|gb|EFL92714.1| UvrY transcriptional regulator [Candidatus Regiella insecticola
           LSR1]
          Length = 222

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 33/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                              G       R  
Sbjct: 2   INVLLVDDHELVRTGIRRIL---------------EDIKGIKVKGETQCGEDAVKWCRNH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  PVDIVLMDMNMPGIGGLEATRKVVRFSPD--------TKVIMLTIHTEDPLPKKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + Y S    +  +   +  +    R I  D   ++ L                   F+ L
Sbjct: 99  HGYLSKGAALQEVVNAIRAVHAGQRYIASDIAQQMAL---------SQLQPQAEAPFDCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE++ +  I++GK  +EIA  L +S  TVN+Y   +  K            A+R+ 
Sbjct: 150 SDRELQIMLMITKGKKVNEIAEQLHLSPKTVNSYRYRMFEKLKINGDVELTHLAIRHG 207


>gi|170749447|ref|YP_001755707.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655969|gb|ACB25024.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 222

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 17/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R +     P     +  ++  D  +       + +E +   H             +D
Sbjct: 3   DRIRVALADDHPIVLAGIRTLLNADPEIELVGEATSGSEALPMIHAA-----DPDVAVVD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +L   +A S          R   L   V                 Y     
Sbjct: 58  VSMPGLNGLELTERVAGS--------CPRTRVLVLTVHEDAAYVQPLLKAGARGYLLKRS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   G  +           A                   L+ RE + L 
Sbjct: 110 AAEDLLRAVRAVAAGGIYLDPSVASH----AMAHPATPTQGGDTEPSAEALSPRETDVLR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I++G ++ EIA    +S  ++  Y A    K   +TR+  I YA  +  +
Sbjct: 166 LIAQGFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIRYAAAHGWL 216


>gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A]
          Length = 241

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 21/230 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
                LL ++      V +   + +         F  +     +  K    + S++    
Sbjct: 3   LVFETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVSDRVTKPR--LISNYHSGW 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSL 133
                  + ++   V++       P                    +     G+       
Sbjct: 61  TSHYLRHQYERIDPVIEWARCSEYPFQWGPDFGHAGISTRQQQLFDEAAEFGICCGLTIP 120

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW------EIGLLAAYQANMFKSYDVHWGKDFELT 187
             D       +     +                EI  +  +     K           LT
Sbjct: 121 LVDRRGGVAAMTFAADRLDPTFLRVAEKYEQALEIMAMCFHIGVRRKLSCGLAVDGVSLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T++ A+
Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|77360848|ref|YP_340423.1| response regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76875759|emb|CAI86980.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 216

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +         +                    G       R  
Sbjct: 2   INVLLVDDHELVRTGIRRILDDVRGFKVVGEAKT---------------GEEAVQFCRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +      +Y   ++    +   V    P   T      
Sbjct: 47  SPNIVLMDMNMPGIGGLEATKKI-----CRYCPDVKI---IVLTVNCEDPYPSTVMQLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +       +   +  +    R I  +       +A   A    S          L+
Sbjct: 99  HGFLTKGAGSDEMVRAIRCVHAGQRYIAPE-------IAQQIALAQVSGRTDESPFQSLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+ +  IA  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 152 ERELQIMLMITKGEKAQSIAERLNLSSKTVNSYRYRMFEKLNVSGDVELTHLAIRYKMI 210


>gi|89073041|ref|ZP_01159588.1| response regulator [Photobacterium sp. SKA34]
 gi|90578924|ref|ZP_01234734.1| response regulator [Vibrio angustum S14]
 gi|89051259|gb|EAR56715.1| response regulator [Photobacterium sp. SKA34]
 gi|90439757|gb|EAS64938.1| response regulator [Vibrio angustum S14]
          Length = 214

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 33/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
           +N+ L  + E   + +  L                      +  + E + G       R 
Sbjct: 2   INVFLVDDHELVRTGIRRLLED----------------VRGIKVVGEAISGEEAVKWCRS 45

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +      +  R +     D           +   +    P         
Sbjct: 46  NHADIILMDMNMPGIGGLEATRKILRFNPD--------VKIIVLTIHTENPFPTKVMQAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +       +   + ++    R I  +   ++ L         +          EL
Sbjct: 98  AAGYLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMAL--------SQFASNSENPFKEL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 150 SERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHGML 209


>gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG]
 gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 167

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L    F       +      + +       + +   +  +     ++       +  L
Sbjct: 21  RVLILTTFDLDEYAFSALRAGASGFMLKDVPPSELVAAIRAVHSGDAVVAPSTTRRL--L 78

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
             +   +  +      +   LTGRE E +  +++G ++ EIA  L +S  TV  ++  ++
Sbjct: 79  DRFAPMLPGTGPATHPELDRLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVL 138

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R   +  A    IV
Sbjct: 139 TKLGLRDRVQVVVLAYETGIV 159


>gi|295099967|emb|CBK89056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium cylindroides T2-87]
          Length = 217

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 66/215 (30%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-GASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  + +         +V       +  +  K D ++       +   
Sbjct: 4   ILIADDQQLIRESLKIILDTDKDFDVIDVVGNGKDALESIEANKPDVVLMDVRMPQMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                  + Y  +   + +    F              + Y         +   +  +  
Sbjct: 64  ECTRIIKQKYPEI---SVIILTTFDDDEYIYDAIKNGASGYLLKGCSFDELSKSIRSVLN 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G I   +   ++    +  AN  +          +L+  E + +  I  G ++ EIA +
Sbjct: 121 GGAIFNPNVAKKLTSFFSQMANNPEHLSWDKDGLPDLSENEWKIIEQIGHGLSNKEIASL 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  S  T+ NY++ I+ K   + R+    + ++  
Sbjct: 181 LQFSEGTIRNYLSVILDKLGLRDRTQLAIWYLKKG 215


>gi|302555046|ref|ZP_07307388.1| luxR family two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472664|gb|EFL35757.1| luxR family two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 233

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 16/230 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            E   R   +         LA ++  +  +S       +   +     +           
Sbjct: 9   EEHPIRVFLLDDHEVVRRGLADLLDAEADISVVGDAENVEHAL-----VRGPALRPDVAV 63

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +       + R +     +           L    F      +       + Y   
Sbjct: 64  LDVRLPDGDGITVCRELRSRMPELAC--------LMLTSFDDEEALLDAIMAGASGYVLK 115

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               + +   +  +     ++  +    +                   +   L+ RE E 
Sbjct: 116 QIRGSDLVSAVRTVASGRSMLDPETTARL---MRSLRADPAEEPGLAPELASLSPREREI 172

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  I +G T+ EI   L +S  TV N+I+ ++ K   + R  A   A + 
Sbjct: 173 LALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLASQL 222


>gi|148653231|ref|YP_001280324.1| two component LuxR family transcriptional regulator [Psychrobacter
           sp. PRwf-1]
 gi|148572315|gb|ABQ94374.1| two component transcriptional regulator, LuxR family [Psychrobacter
           sp. PRwf-1]
          Length = 211

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +S +      +  +   D   +    + AL+              
Sbjct: 2   IKVLVVDDHDLVRMGISRMLADDPEIEVIGEADSGEAAIRMVKALS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +  + +       +   ++           + P          
Sbjct: 48  -PDVVLLDVNMPNIGGVETTKRLRQ-----FDEKVKILAVSSVS---SQPYPSMLLKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +    +  +   +  ++   +    D   ++  +           D        L+
Sbjct: 99  NGYITKGTPLDEMIKAIKKVYQGSKYFSSDVAEQLADMLL--------TDNEESPFDRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +   ++  +IA  L +S  TVN Y   I  K    +       A+R+ ++
Sbjct: 151 EREKQVAMMVVNCQSPQQIADQLFVSVKTVNTYRYRIFEKVGVDSDVKLTHLAMRHGLI 209


>gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 244

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 27/229 (11%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    + VG   F           +    + S++P   ++     E      +
Sbjct: 2   DHEIHSFIKRKLKGVGDVWFSYFMMSKNSTSQP--YIISNYPEAWMKEYIKKEMFLSDPI 59

Query: 102 LQRPTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFP 149
           +        P      + +T                + + Y  +  D       L +   
Sbjct: 60  IVASLARITPFSWDDNDLVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANH 119

Query: 150 KGRIILRDRL----WEIGLLAAYQANMFKSYDVHWG---------KDFELTGREVECLTW 196
                    +     ++ +L         +Y              ++  L+ RE E L  
Sbjct: 120 LEDANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINVQDNPPDNSRNALLSPRETEVLFL 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 180 VSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 11/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     +  + E   GA    LV         +D  +      
Sbjct: 4   VVLVDDQAVVRAGFRVILDSEDDLRVVGEAADGAGAVDLVARLKPDVVCMDVRMPGGDGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +  +       VL          F              + +     D   +   +
Sbjct: 64  TATRRITTT-LADPPPVL------VVTTFDLDEYVFGALEAGASGFVLKDCDPEDLVSAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L     ++ +     +       A       V    +  LT RE E +  ++EG+++ 
Sbjct: 117 RRLAAGQGLLDQAVTRRVI---GEFARRAPLPAVDPAVEDLLTAREKEVVVLLAEGRSNV 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L I  +TV +++   M K   + R   + +A +N +
Sbjct: 174 EIAEALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNGL 214


>gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
 gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1]
          Length = 226

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 13/212 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIEFQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLL---FPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           W +EGKTS EIA+IL IS NTVN +  ++ +K
Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKK 221


>gi|296112985|ref|YP_003626923.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|295920679|gb|ADG61030.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis RH4]
 gi|326574060|gb|EGE24009.1| two-component system nitrate/nitrite response regulator NarL
           [Moraxella catarrhalis CO72]
          Length = 218

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 17/219 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D       L   +S    +  + E   G     ++  ++     LD  +    
Sbjct: 12  ARLLLVDDHPMLRRGLADLLSLEKDVEVIAEANHGMEALDILNQEIVDLVILDHTMPILN 71

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +             +   L   V     +         + Y     +  +I  
Sbjct: 72  GIETLKKIRELGI--------QTKVLLFTVSDNSKDVQDALHLGVDGYLLKDMEPEQIIT 123

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     +I       +               V      ELT RE++    I++G +
Sbjct: 124 DIRKILCGELVISPSLAPILA--------QAMRKPVKTDSSHELTEREIQVAKMIAQGMS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  I   LGI+ +TV  ++  I+ K   +TR     +AV
Sbjct: 176 NKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWAV 214


>gi|296101738|ref|YP_003611884.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056197|gb|ADF60935.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 218

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                        A     G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRIL---------------EDIKGIKVAGEACCGEDAVKWCRTN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A +  D           +   V    P          
Sbjct: 47  SADVVLMDMNMPGIGGLEATRKIARTFVD--------TKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +F   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRSVFAGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|269796274|ref|YP_003315729.1| two component transcriptional regulator, LuxR family [Sanguibacter
           keddieii DSM 10542]
 gi|269098459|gb|ACZ22895.1| two component transcriptional regulator, LuxR family [Sanguibacter
           keddieii DSM 10542]
          Length = 234

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 57/228 (25%), Gaps = 26/228 (11%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R       P     +  M+ ++  +             G     L R         D  +
Sbjct: 30  RVVVADDHPVVRAGIVGMLGVESDIEVVGEAE-----DGRQAVDLARTLSPDVVITDLRM 84

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R +                 +    + T  E +         Y       A
Sbjct: 85  PVLDGVGATREIVALPGT--------VRVVVLTTYETDGEILRAVEAGATGYLLKDTPRA 136

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  G+        ++       +                   +   LT REVE L  ++
Sbjct: 137 ELVAGIREAARGQTVLTPSVATRL-------------VSQVGSRADRLTPREVEVLRAVA 183

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++  +   L IS  TV  ++     K     R+ A+  A    ++
Sbjct: 184 RGLSNAAVGHELFISETTVKTHLIRAFGKLGVNDRTHAVTVATDRGLL 231


>gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9902]
 gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9902]
          Length = 245

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 82/227 (36%), Gaps = 13/227 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRC 89
             R++ +D        + A  E  G      V  +      +Q L  +V SD     +  
Sbjct: 18  APRLLLVDDEPGLRTAVQAYLEDEGFDVTTAVDGEEGFTKAQQMLPDVVISDVMMPRLDG 77

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             L +K +    L     +F        +         + Y    FD   +   +  +  
Sbjct: 78  YGLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQ 137

Query: 150 KGRIILRDRLW----EIGLLAAYQ---ANMFKSYDVHWGKDFE---LTGREVECLTWISE 199
           + + +L++       ++G +A       ++    +    KD      T RE   L  ++E
Sbjct: 138 RQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKDPVAHSFTPREASVLQLVAE 197

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 198 GLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|296138380|ref|YP_003645623.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026514|gb|ADG77284.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 212

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 63/223 (28%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  + E   G     LVR    Q   +D  + +   
Sbjct: 3   RVGVVDDQAMFRSGLSMLIDSQADMENIGEAADGVEACALVRDKRPQVLLMDVRMPNIDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +           +     +    F                +         +   
Sbjct: 63  IEATAQIMTE---PDPPAI-----IMLTTFDHDEAVARAMEAGAAGFLLKESQPQFVLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +     +      +      +   LT RE +     +EG ++
Sbjct: 115 IRDVAAGNMVVAASAARHL-----FAHPRPSTAPHRPVEFGRLTEREQQIFVRAAEGLSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    ++  TV  +++ ++ K   + R   + YA R+ +V
Sbjct: 170 AEIAEKEFLAETTVKTHVSRVLTKLGLRDRVQLVVYAHRHGLV 212


>gi|223042639|ref|ZP_03612688.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus capitis SK14]
 gi|222444302|gb|EEE50398.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Staphylococcus capitis SK14]
          Length = 218

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 25/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     +  S +    + +  +      V    ++                  
Sbjct: 1   MKIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEY--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D ++           +  +   K          L   ++              
Sbjct: 46  -----KPDVLILDLSMPPGESGLVATS--KISESFPETKILILTMYDDEEYLFHVLKSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFEL 186
             Y        ++ + +  ++     +  D      L+  +   +  +           L
Sbjct: 99  KGYILKNAPDEQLILAVRTVYKGETYV--DMKMTTSLVNEFINQSHQEEVSYSSDPFKIL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I++G  + +IA  L +S  TV  +   IM K   K++   + YA++  ++
Sbjct: 157 SKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEYALKKKLL 216


>gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302]
 gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412]
 gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302]
 gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 175-1]
 gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 198-1]
 gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 69-1]
 gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 84-1]
 gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 182-1]
 gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 116-1]
 gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 21-1]
 gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 187-1]
 gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 119-7]
 gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 107-1]
 gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 124-1]
 gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 146-1]
 gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 145-7]
 gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 85-1]
 gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 117-3]
 gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H736]
 gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA280]
 gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H591]
 gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9]
          Length = 225

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|226363249|ref|YP_002781031.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226241738|dbj|BAH52086.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 276

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 21/210 (10%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D        + AL E+      VG +        L     +D ++        
Sbjct: 1   MIRLLLADDHAIVRAGLRALLEHEDDIEVVGEAATADAAVALCATTPVDLVLMDLRFGPG 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +  +   +               + T  + +   A     Y         +   +  
Sbjct: 61  TSGVDATRNLRSLPNPPHVLV--VTNYDTDADILDAVAAGAAGYLLKDTPPPELLAAVRA 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 ++      ++                       L+ RE++ LT ++ G+++ EI
Sbjct: 119 ASAGDSVLSPAVASKL-------------MTRVRRPATSLSPREIQVLTLVAAGRSNREI 165

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGA 236
              L +S  TV +++  I  K   K+R+ A
Sbjct: 166 GKELFLSETTVKSHLVHIFGKLGVKSRTSA 195


>gi|133757303|ref|YP_001096222.1| hypothetical protein pLEW279a_p23 [Corynebacterium sp. L2-79-05]
 gi|110084187|gb|ABG49341.1| hypothetical protein [Corynebacterium sp. L2-79-05]
          Length = 221

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 77/244 (31%), Gaps = 25/244 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      V +++  +D    + +  +      +  +           ++ A         
Sbjct: 1   MTATEAPVRVLVADDDPLVRTGIVGILDTDPAIEVVAQAADGAEALRKIDA--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      D ++ +           +          F       
Sbjct: 52  ------HRLDVALFDIQMPGMSGLDALQRLRSDGSALPCLFV--------TTFGEDDYIA 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +   + D  ++  G+  +  +G          +  L +  +  +  Y    
Sbjct: 98  EAIRLDADGFVLKSGDPRQLIAGVHAVAGRGAFFSPSVARRL--LDSGVSTTYTQYASAV 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E L  +S+G+T+ EIA  L ++  TV  ++++I+RKT  + R  A   A
Sbjct: 156 ERFERLTAREREILIRLSQGETNAEIAKALHLAPGTVKVHVSAILRKTEARNRVEAALIA 215

Query: 241 VRNN 244
           +R  
Sbjct: 216 LRAG 219


>gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 210

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 17/223 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  +    D       L   +    R   +    G     L    +     +D  +    
Sbjct: 1   MKTILLAEDQQIVRQGLKMMIEHRQRYQVIEAENGQEAVDLAGRHVIDLVLMDVRMPVMT 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  + +           ++         F      I         Y     D+  +  
Sbjct: 61  GIEATKRLIE-----RDPNVKIVM---LTTFIDERYAIEALKAGAKGYILKDADMESLFA 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEG 200
            +        ++        G +AA        +     K+    L  RE E +  + +G
Sbjct: 113 TIEKALLGELVLD-------GQVAAKVMPKLLQHSAPQEKEQIPPLAEREKEIIRLVGQG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + + EIA  L +S  TV NYI+ +  K   + R+    +AV++
Sbjct: 166 RNNAEIAAELYLSVGTVKNYISQLFIKLGVRDRTQLAIFAVKH 208


>gi|54309406|ref|YP_130426.1| response regulator [Photobacterium profundum SS9]
 gi|90413708|ref|ZP_01221697.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
 gi|46913842|emb|CAG20624.1| putative transcriptional regulator, LuxR family [Photobacterium
           profundum SS9]
 gi|90325329|gb|EAS41823.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
          Length = 214

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  L      +  +   D          A                
Sbjct: 2   INVFLVDDHELVRTGIRRLLEDVRGIKVLGEADSGEEAVKWCRA---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q  D ++       +    A  +  ++   ++    +   +    P          
Sbjct: 46  ----QHADIVLMDMNMPGIGGLEATRKILRFNPDIKI---IVLTIHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L         +          +L+
Sbjct: 99  AGYLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMAL--------SQFAPDSENPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDIGGDVELTHLAIRHGML 209


>gi|218780409|ref|YP_002431727.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761793|gb|ACL04259.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 212

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 72/223 (32%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   +  +  +  + E   G     L          +D  +     
Sbjct: 3   RVLLADDHVIVRAGLRRIIEDSEDIKVIVEASNGKEAIDLTLEHCPDVAVVDISMPGIDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++V  +           L     L   +       +         Y +      ++   
Sbjct: 63  LEVVSRLHAE--------LPDLPMLILTMHEEEQYVVRAIEAGAMGYMTKKSAPEQLVTA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L    R +  +    + L  +  +      D        L+ RE++ L  ++ G T+
Sbjct: 115 IRKLHSGSRFLTEEAAELLALRVSRWSKGGSLLDS-------LSKRELQVLRHLASGHTN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    IS  TV+ Y A +++K   +  +    +A++NN++
Sbjct: 168 REIADSYHISVKTVDTYRARLLKKLNLRNNADISRFAIQNNLI 210


>gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
 gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda
           ATCC 23685]
          Length = 202

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 24/222 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     + +++ LD          +     G+    L          LD  +  
Sbjct: 1   MIVDDHPLMRRGIRQLLELDPLFDVAAEASS-----GSEAIALAERIQPDLILLDLNMKG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D ++ +     D           +   V     +         + Y     +   +
Sbjct: 56  LSGLDTLKALRNEGVD--------ARIIILTVSDARSDVYALVDAGADGYLLKDSEPETL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +     L           N   +         +LT RE++ L  ++ G
Sbjct: 108 LAQIHQAAEGHNVFSEAVL-----------NYLGTRSEIADPLADLTERELDVLQEVARG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++ +IA  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 157 MSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAATVLYLE 198


>gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 232

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            +  + +    D       +   +     +  + E   GA    + R +      LD  +
Sbjct: 16  PAAPTRILLADDHALVRRGVRLILDGEPDLTVVAEAGDGAEAIEMARAERPDLVILDIAM 75

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R +          V+     L   ++                Y   +    
Sbjct: 76  PRLTGLQAAREL--------SRVMPGLRILMLTMYDNEQYFFEALKAGAAGYVLKSVADR 127

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +             +    +  +        +  K  +    +    T RE E L  ++
Sbjct: 128 DLVEACRAAMRDEPFLYPGAVTALI---RNFLDRAKDGEDLPARAI--TEREEEILKLVA 182

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG +S EIA +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 183 EGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230


>gi|239918654|ref|YP_002958212.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839861|gb|ACS31658.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 230

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 13/227 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   V     +  + E   G      V         +D  +     
Sbjct: 10  RVALVDDQALIRSGLAMLVDSQPDLTVVAEAGSGREAVASVSVAGADVVLMDVRMPEMDG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +              P  +    F              + +         +   
Sbjct: 70  IEATRALLRRP--------DAPRVVVLTTFDLDEYAFDAIEAGASGFLLKDAPPEELLAA 121

Query: 144 LMLLFPKGRIILRDRLWEIGL-LAAYQAN---MFKSYDVHWGKDFELTGREVECLTWISE 199
           +  +     +I       +   +A    +        +        LT RE E L  +++
Sbjct: 122 IRTVHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQAAVASLTPREREVLVLMAQ 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L +S  TV  ++  ++ K   + R  A+  A R  +V
Sbjct: 182 GAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIAHRAGLV 228


>gi|320106469|ref|YP_004182059.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924990|gb|ADV82065.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 210

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 70/246 (28%), Gaps = 38/246 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E + + +++  +       ++ +      +  +                        
Sbjct: 1   MEKEAKAIRVLIVDDHPIMRVGIAAIINAQGNMQVVGEAGTASEAIR------------- 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L    L     +D  +      + +R +                 +    +    +  
Sbjct: 48  --LHAKLLPDITLMDLRLPDGNGAEAIRVI--------CAASPSARIIVLTTYEGDEDIH 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +    R +         +++   ++     +   
Sbjct: 98  QAMEAGARGYLIKGMPHDALIRAMHRVHTGHRFLP-------QVISEALSSRVPGSN--- 147

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E L  +  GK++ EIA  L I   TV  +++ I+ +   + R+ A+   
Sbjct: 148 -----LSQREQEVLQLLFAGKSNREIAEELQIKETTVKTHVSVILMRLNVEDRTQAVVEG 202

Query: 241 VRNNIV 246
           ++  +V
Sbjct: 203 LKRGLV 208


>gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 219

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 31/236 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           NI+L  +       +  +   +D    +                    G S   LV    
Sbjct: 4   NIILIDDHTLFRRGIRSVLDEAD-YEVIGEAAD---------------GLSGVKLVEQLR 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + +  +  S  ++          +   V     E I       +
Sbjct: 48  PDLVLLDLDMPVMNGREALGQILSSNPEQ--------KVVMLTVSEDGDELIECMKQGAH 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            +     +       +        +   +      + A    ++              LT
Sbjct: 100 GFLLKNINADFFIEAVGKALNGDNVFSPE------MTAHLVKSLISPIQPQSDAHIGTLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  ++ G ++  IA  L ++ +TV  Y+ SI+RK    +R  A  YA+++
Sbjct: 154 PRERETLHHLAIGHSNKVIAKKLNLAESTVKAYVQSILRKLGLSSRVQAAVYAIQH 209


>gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 227

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 13/223 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVRCM 90
            ++ +D        + A  E  G +  +       W+L Q++  D ++S     + V   
Sbjct: 4   HLLLVDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELLQQRIPDLVISDIMMPE-VDGY 62

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
               + +      R   +F        + I       + Y S  FD   +   +  L  +
Sbjct: 63  QFLAQLREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLLTR 122

Query: 151 GRIILRDRLWEIGLLAAYQAN--------MFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                 +   +I  LA   A                      + T RE   L  ++ G  
Sbjct: 123 KEAKDANATTDIADLANQVAEIRAILMNRAPLPTQNTPTVKIDFTPREQSVLDLVAVGLM 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L  S   V  Y++ +  KT T +R+  + +A+ N +
Sbjct: 183 NKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALENGL 225


>gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103]
 gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis]
 gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103]
 gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355]
          Length = 249

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 31/230 (13%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +       G+  +        ++   + ++ S +P + VR    +       V+  
Sbjct: 15  LQTYIQRKLSSFGSPEYAYTVV--SKKNPSNVLIISSYPDEWVRLYRANNFQLTDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLL--FPK 150
             +   P        +                 + N +  +  D       L ++     
Sbjct: 73  AFKRTSPFAWDENITLMSDLRFTKIFSLSKQYNIVNGFTYVLHDHMNNLALLSVIIKGND 132

Query: 151 GRIILRDRLWEIGL--------------LAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + +    E G               LA  +A    + + +  K    + RE E L W
Sbjct: 133 QAALEQRLASEQGTMQMLLIDFNEQMYRLAGAEAERAPTVNQNADK-TIFSSRENEVLYW 191

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S GKT  EIA I GIS +TV  +I +++ K        AI   V  +++
Sbjct: 192 ASMGKTYSEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241


>gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
 gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1]
          Length = 199

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +      +     M  + +   G     LVR        +D  +      D  
Sbjct: 7   AEDQQMLLGAFGSLLDLEDDMEVVGKASNGEEALRLVREFQPDVCIMDIEMPGKTGLDAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  +              +    F              N Y         +   +  +
Sbjct: 67  EELKGTG----------CKIIILTTFARAGYFQRAIRAGVNGYLLKDSPSEDLADSIRTV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R+   + + +                  +G+   LT RE+E L  +++GK + EIA
Sbjct: 117 MSGKRVYAPELIEDA-----------------YGEGNPLTVREIEVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI++I+ K   K R  AI  +     
Sbjct: 160 DELSIKTGTVRNYISTILDKLQVKNRIEAITQSKEKGW 197


>gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus]
 gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri]
          Length = 224

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 17/206 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASI 224
           EGK+S +I+ ILG S  TV  ++ + 
Sbjct: 198 EGKSSWDISKILGCSERTVTFHLTNA 223


>gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 27/233 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGAS---------HFLLVRWDLFQEQKLDSIVSSDWPFD 85
           R++ +D        + A  E  G              L+     Q    D ++     + 
Sbjct: 19  RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTAQPQLIISDIMMPGMDGYQ 78

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +   E   +  V+      F        + I       + Y    FD   +   + 
Sbjct: 79  FLAQLRKLEPYSHLPVV------FLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVS 132

Query: 146 LLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGKD----------FELTGREVEC 193
            L  + R          E+  + A  +    +                   ELT RE + 
Sbjct: 133 NLIERSRAASPSEVVARELASIRALLSERTLATATPAQTSAPTPLPPPIKVELTPREQQV 192

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++EG  + EIA  L  S   V  Y+  ++ KT T +R+  + YA+   ++
Sbjct: 193 LEKVAEGLMNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 245


>gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 235

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 63/230 (27%), Gaps = 20/230 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R           D LA ++ L   ++            G     LV          D
Sbjct: 24  RALRVVLADDQRIVRDGLATLLGLLPGITVVGAA-----ADGEEAVALVDRHRPDVLLTD 78

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +                 +    +      +         + S   
Sbjct: 79  LRMPGCDGVEATRRVRA--------AHPGTAVVVLTTYVDDDAIVAALRAGAAGWLSKDA 130

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   I   L         I    L  +           +           LT REVE L 
Sbjct: 131 DADAIGRALHSAADGQGTIDAGALARL-------VAASQPAPAGGEPPDGLTPREVEVLA 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G ++ EIA  L +   T+  ++  +  K   + R+ A+ YA R+ +
Sbjct: 184 LIAQGLSNREIARRLVVGEATIKTHVNHLFAKAGLRDRAQAVNYAYRHGL 233


>gi|229542625|ref|ZP_04431685.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229327045|gb|EEN92720.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 218

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 36/238 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ IV+  ++      +  + +  +    M  +                 G       
Sbjct: 1   MEKIKIVIADDNSFIREGLKIILSSYEEFEVMATVGN---------------GKEAAAYC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +      +  + +A         ++          F      +    
Sbjct: 46  RNQPVDIALLDVRMPEMNGVEAAKIIAAQ--TSAKPMI-------LTTFDDDEYIVDALR 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D  +IR  +  ++    I     L +I                      
Sbjct: 97  NGARGYLLKNNDPEKIRDAIKSVYNGNSIFQDAVLDKI---------KSNLSGREPEPKI 147

Query: 185 EL---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L   T RE E ++ I++G ++ EIA  L IS  TV NYI SI  KT  + R+    Y
Sbjct: 148 DLKKFTEREREIMSLIAKGFSNKEIAKTLYISEGTVANYITSIFGKTGLEHRTQIAVY 205


>gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   GA      R        LD  +     
Sbjct: 10  RILLADDHALVRRGVRLILDGEPDLRVVAEAGDGAEAIARARTHEVDLAVLDIAMPRMTG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +   + D           L   +               + Y   +     +   
Sbjct: 70  LQAARELIALKPD--------LRVLMLTMHDNEQYFFQALKAGASGYVLKSVADRDLVAA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     +    +  +        +  +  +    +    T RE E L  ++EG +S
Sbjct: 122 CRAAMRDEPFLYPGAVTAL---VRNYLDRVRHGEEPPDQVV--TPREEEVLKLVAEGHSS 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L IS  TV+ + A+++ K   + R     YA+R  ++
Sbjct: 177 KEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219


>gi|271963222|ref|YP_003337418.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506397|gb|ACZ84675.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 25/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + L  M+  D  ++            G    +           +D  
Sbjct: 2   LRLMIVDDHPVVREGLRGMLEADPGITVVGEA-----ASGDEAVVRAGELRPDVILMDLR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    + T  + +         Y       
Sbjct: 57  MPDGDGVSATGRILAER--------PESRVIVLTTYETDQDIVRAVEAGAAGYLLKDTSR 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   ++       ++       +        +              L+ RE E L+ +
Sbjct: 109 ADLLAAIVSAARGETVLSPSVATRLVTRMRAPVSE------------SLSPREAEVLSLV 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T+ +I   L IS  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 157 ARGLTNAQIGKELFISETTVKTHLLRVFGKLGVSDRTAAVTTALDRGLL 205


>gi|256374666|ref|YP_003098326.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255918969|gb|ACU34480.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 62/234 (26%), Gaps = 29/234 (12%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQ 72
              E     V  +    D       +   ++    +  + E   G     LVR D     
Sbjct: 2   DGSEAVGGPVIRVLLVDDHPVVRQGVRGMLAPATDLEVVGEAASGDEAVRLVRADPPDVV 61

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +    +                 +    + T  + +         Y  
Sbjct: 62  LMDLRMPGGDGVEATARIGAL-----------SRVVVLTTYETDADILRAVEAGAVGYLL 110

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +        ++       +                   +   L+ REVE
Sbjct: 111 KDASPEDLVAAVRAAARGETVLAPSVAGRL-----------------VRRTPALSPREVE 153

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +  G ++ EI   L I   TV  ++  +  K     R+ A+  A+R  ++
Sbjct: 154 VLRLVGRGLSNAEIGRQLFIGEATVKTHLLRVFSKLDVSDRTAAVTTAMRLGLL 207


>gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121]
          Length = 209

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +   +       + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGESGKDAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L     +    F    E         
Sbjct: 48  QPDLILMDLLMDDMDGVEATTEIKKD--------LPHIKVVMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIAEAVRKTYNGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|293396653|ref|ZP_06640929.1| response regulator [Serratia odorifera DSM 4582]
 gi|291420917|gb|EFE94170.1| response regulator [Serratia odorifera DSM 4582]
          Length = 235

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C                         +
Sbjct: 19  ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCR---------------GN 63

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           +     +   +    P          
Sbjct: 64  AVDVVLMDMNMPGIGGLEATRKIVRY--------VPDIKVIMLTIHTENPLPAKVMQAGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +      F  L
Sbjct: 116 AGYLSKGAAPQDVVNAIRSVHAGQRYIASDIAQQMAL---------SQLEPQTETPFNCL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++GK  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 167 SERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 225


>gi|238752983|ref|ZP_04614443.1| Two-component response regulator [Yersinia rohdei ATCC 43380]
 gi|238708805|gb|EEQ01063.1| Two-component response regulator [Yersinia rohdei ATCC 43380]
          Length = 210

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S+  + +            +                 + 
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSNEFSTIYESVDGSEALETLK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGYT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   +N          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSNH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 26/216 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R+  ++       ++  +               G      +     +   +D  +     
Sbjct: 4   RVAVVEDNQRLRRQLLQILSQFEDIECVGNYGSGEEALEQIPHKNPEVVLMDIKLPKMSG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + V  +          ++     +   V+              N Y   +    R+  G
Sbjct: 64  IECVHELKK--------IMPLVQIIIVTVYEDSECIFDAIKAGANGYLIKSGPPERLIEG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +        G +A      F++     GK   L  RE + LT ++ G   
Sbjct: 116 IRDIASGGSPMS-------GHIARKVVGYFRTLGPATGKAKPLAPREEQVLTLLASGYLY 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI   LG+S  TV  Y+ +   K   ++R  A+A 
Sbjct: 169 KEIGAKLGLSVETVRTYVKNACTKMHVRSRIEAVAK 204


>gi|146281277|ref|YP_001171430.1| two-component response regulator NarL [Pseudomonas stutzeri A1501]
 gi|145569482|gb|ABP78588.1| two-component response regulator NarL [Pseudomonas stutzeri A1501]
 gi|327479436|gb|AEA82746.1| two-component response regulator NarL [Pseudomonas stutzeri DSM
           4166]
          Length = 202

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 13/187 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L +        +D  +      +  R M  ++ D           +   V    
Sbjct: 25  GEDAIRLAQQIEPDLILMDLNMPGIDGLETTRRMRDADID--------ARIIMFTVSDEQ 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +       + Y     D   +   + +       +  +    +           +  
Sbjct: 77  SHVLEALRNGADGYLLKDMDAEELIEQIRIAATGRMALSPELTQVLAEAI-----RVRPK 131

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   LT RE E L  I++G+++  IA  LGI+  TV  ++ +++ K   ++R  A
Sbjct: 132 PTGQVQFSSLTKREKEVLRQIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLRSRVEA 191

Query: 237 IAYAVRN 243
             + + N
Sbjct: 192 AVWVLEN 198


>gi|269128421|ref|YP_003301791.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313379|gb|ACY99753.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 210

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +VL  + +   S V       D +  +                          ++   
Sbjct: 3   TTVVLVDDHQMFRSGVKAEL--GDGVEVVGEAGDVDE---------------AIAVITAT 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++R +             R   L   V     + I    G  
Sbjct: 46  EPDVVLLDVHLPGGGGIEVLRRLHGK---------VRSRFLALSVSDAAEDVIGVVRGGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + T     +   +  +     +        +  L A+ A      D       +LT
Sbjct: 97  RGYVTKTISGPELTDAIGRVAEGDAVFSPRLAGFV--LDAFAATAAPPIDPELD---QLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G    EIA  L IS  TV  +++S++RK     R     +A    +V
Sbjct: 152 QREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWAAARRLV 210


>gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 223

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 21/236 (8%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+ R+ E+     SH   R  +   +      +              A    L   D  
Sbjct: 1   MVVERKCERVLVVDSHPIVRDGIEVVLGKAYAGIDVGGAADM------AEASDLCGRDRP 54

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D ++  D P   +  +                 +      +            + 
Sbjct: 55  DLVLMDVMLPGDDPLPAMGEILR--------AHPGLRFVVFTALGSEARAAEAIRFGASG 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         I   +  +      I          L   +               ELT R
Sbjct: 107 YLLKWCSPDGIVQAIRRVMAGRVHIDPS-------LDEARVASAAGGRALASPVDELTRR 159

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R   
Sbjct: 160 EKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 215


>gi|326331931|ref|ZP_08198217.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325950244|gb|EGD42298.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 219

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 62/234 (26%), Gaps = 19/234 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R   V   P   D + R       ++        T   G            + 
Sbjct: 1   MGTDSAARVMVVDDHPMWRDAVER------DLATAGFEVVATASTGREAITRFAATRPEV 54

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +       +   +                 L         + +         Y 
Sbjct: 55  VVLDLQIPEPDGVQVTTEVIALH--------PATKVLILSASGEQNDVLAAVKAGATGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +  +     +        +     +      +     G    LT RE 
Sbjct: 107 VKSASREELLDAVERVAAGDPVFTPGLAGLVLGEFQH-----SAATEVRGDKPTLTDRET 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  +++G +  +IA  L +S  TV N++ + +RK     R     YA+   +
Sbjct: 162 EILKLVAKGLSYRQIADRLVLSHRTVQNHVQNTLRKLQMHNRVELTRYAIEQGL 215


>gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR
 gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum]
          Length = 244

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 27/229 (11%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    + VG   F           +    + S++P   ++     E      +
Sbjct: 2   DHEIHSFIKRKLKGVGDVWFSYFMMSKNSTSQP--YIISNYPEAWMKEYIKKEMFLSDPI 59

Query: 102 LQRPTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFP 149
           +        P      + +T                + + Y  +  D       L +   
Sbjct: 60  IVASLARITPFSWDDNDIVTLRAKNQDVFISSVQHDISSGYTFVLHDHDNNVATLSIANH 119

Query: 150 KGRIILRDRL----WEIGLLAAYQANMFKSYDVHWG---------KDFELTGREVECLTW 196
                    +     ++ +L         +Y              ++  L+ RE E L  
Sbjct: 120 LEDANFEKCMKNHENDLQMLLVNVHEKVMAYQRAINDQDNPPDNSRNALLSPRETEVLFL 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +S G+T  E++ ILGIS  TV  +I + +RK        AI  A+  N+
Sbjct: 180 VSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELNL 228


>gi|331653626|ref|ZP_08354627.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
 gi|331048475|gb|EGI20551.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M718]
          Length = 225

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDRGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHEREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|298249444|ref|ZP_06973248.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297547448|gb|EFH81315.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 236

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 63/240 (26%), Gaps = 20/240 (8%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
             D  R   V       D +  ++ +   ++            G                
Sbjct: 10  ERDAIRVLVVDDQQLVRDGIVSLLRVQAGLTIVGAAGN-----GQEALDQALTLRPDVIL 64

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +           +           L     L    F                Y   
Sbjct: 65  MDVRMPVIDGVTATAQILKQ--------LPDCCILMLTTFDDDAYVRDALRTGARGYLLK 116

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGKDFE--L 186
              VA +   +         +    +  I       +               G   E  L
Sbjct: 117 DMPVADLAKAIFAASRGVYQLDAAVIERIVAPVGATIKPTTEQPLAPSPTRTGSVTEARL 176

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++ G T+ E+A  L IS  TV N++A++  +   + R+ A+ Y     ++
Sbjct: 177 TRREQEILRLVATGATNREVAERLVISEGTVKNHLANLFSRLGLRDRTQAVLYTREQGLL 236


>gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 223

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 5/221 (2%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              +   R++ +D    W   +       G              +   ++       DL 
Sbjct: 3   EGGETPIRVMVVDDHPIWREGVARDLTERGFDVVATAPDAPAAVRIAGTVRPDVVLMDL- 61

Query: 88  RCMALSEKDKYYNVLQRP---TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              A S       + +R      L         + +         Y   +  V  +   +
Sbjct: 62  NLGATSGVQAIAEIAERSPDSRVLVLSASGEHADVLEAVKAGALGYLVKSAGVDELLEAI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +        +       A   K  D        LT RE E L  +++G T+ 
Sbjct: 122 RRTARGVAVFTPGLAGLVLGEYRRLAETPKPADG-SPAVPALTERETEVLRLVAKGMTAR 180

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L +S  TV +++ + +RK     RS  + YA+   +
Sbjct: 181 QIAAKLVVSHRTVESHVQNTLRKLQLHNRSQLVRYAIEQGL 221


>gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 213

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 64/239 (26%), Gaps = 32/239 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + I+L  +       +  L +  D L                  L             
Sbjct: 3   EPIRILLAEDQPLMRQGLRALLSTEDDLDVTAEAASGPEALDAARRL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +       +   +                 L    F      +     
Sbjct: 50  --QPDVILMDIQMPGLTGVQVTEALVADGL--------AGRVLILTTFDREDYVLDALRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +     D   +   + L+    R I      +   L A                  
Sbjct: 100 GAAAFLLKDVDADELARVIRLVARGERFIQPTVAAKYLRLLAQ---------RPQEPQEP 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E L  I+ G ++  IA  LGIS +TV N+I+S++ K   + R+ A   A    
Sbjct: 151 LTPREHEVLALIARGDSNKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEAALRARTLG 209


>gi|259908857|ref|YP_002649213.1| response regulator [Erwinia pyrifoliae Ep1/96]
 gi|224964479|emb|CAX55989.1| Response regulator protein [Erwinia pyrifoliae Ep1/96]
 gi|283478844|emb|CAY74760.1| putative 2-component transcriptional regulator UvrY [Erwinia
           pyrifoliae DSM 12163]
          Length = 219

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +   +C                          
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGIQVVGEANCGEDAVKWCRT---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  STDVVLMDMNMPGIGGLEATRKIIRYAPD--------CKIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQEVVSAIRSVNSGQRYIASDIAQQMAL-------SQLEPQKSESPFCCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K +          A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVTEISEHLNLSPKTVNSYRYRMFSKLSISGDVELTHLAIRHGL 209


>gi|302038390|ref|YP_003798712.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300606454|emb|CBK42787.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 215

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  +       V  +       A M           ++                  
Sbjct: 7   VRILVVDDHPSFRRGVKDILEEGFEGASMAECGNAQEMLDQVREQ--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    +D  +      ++++     E  +   +L        P        I       
Sbjct: 52  PYDLVVMDISMPGRSGPEVLK-----ELKQLAPMLPVLILSMHP---EDQYAIRMFKAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +      +   G+ +       + L      +              L+
Sbjct: 104 AGYLTKASAPEELVHAAKKVMAGGQYVSASVGEALALTVRTGVDKLAHER--------LS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G+T  +IA  + +S  T++ Y A I+ K   K  +    YA+++ +V
Sbjct: 156 DREYEVLCLIASGQTVSDIAESIHLSVTTISTYRARILDKMNLKNNAELTRYALQHGLV 214


>gi|227504946|ref|ZP_03934995.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198455|gb|EEI78503.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 225

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 10/221 (4%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D +  +  +   +S    M  + +   G                +D  +        
Sbjct: 5   LVDDQVLFLHGIAQIISSQPDMDVIWQANDGEDALTQCAATPADVVLMDVQMPVRDGISA 64

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +A S        L     +    F      +       + +     +   +   L  
Sbjct: 65  TAEIASS--------LPETKVIILTTFDDEDYVVAGLRAGASGFVLKDAEPEELLSALRT 116

Query: 147 LFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++    +I       +   +     +              LT RE E L  I  G ++ E
Sbjct: 117 VYRGDAVISPRATKRLVHSMRDDSTDTLSISGTDRRVLESLTAREQEILEAIGMGWSNTE 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  + IS  TV  ++  ++ KT+++ R  A  +A R  +V
Sbjct: 177 ISERMFISMPTVKTHVGRVLAKTSSRDRVHAALFAYRTGVV 217


>gi|261340312|ref|ZP_05968170.1| response regulator UvrY [Enterobacter cancerogenus ATCC 35316]
 gi|288317402|gb|EFC56340.1| response regulator UvrY [Enterobacter cancerogenus ATCC 35316]
          Length = 218

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +                        A     G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRIL---------------EDIKGIKVAGEACCGEDAVKWCRAN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A +  D           +   V    P          
Sbjct: 47  SADVVLMDMNMPGIGGLEATRKIARTFVD--------TKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRSVYAGQRYIASDIAQQMALSQI-------EPEKTASPFACLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|29832167|ref|NP_826801.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609285|dbj|BAC73336.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 239

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V +VL  + +   + +  +      +  +                    G     L 
Sbjct: 1   MSAVRVVLADDQQLIRTALRMVIADLADMDVVGEAAN---------------GEEAVRLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  +  D           L    F           
Sbjct: 46  DELRPDVVVMDIRMPGTDGIEATRRITEAPGD--------VRILMLTTFDDDDYVYGALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +      +  I   + ++     +I       +                   +  
Sbjct: 98  AGASGFLVKDMGLDDILAAVRVVAAGDALIAPGVTRRL----IQDFVASPEQPRARRELT 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E+T RE E LT +  G T+ EIA  L IS  T   Y+  ++ K   + R   +  A    
Sbjct: 154 EITEREREVLTLVGTGLTNTEIAERLFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAG 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 211

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  + E     +  L +R + +  +                    G     L R 
Sbjct: 2   PIRVLIVDDHELLREGLKSLLSREEDMEVVGEAAG---------------GREAVALCRS 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD+ +      ++ R +           +     L    F      +      
Sbjct: 47  LRPDVVVLDARLPDVDGVEVCRQLQEE--------MPEVAVLMLTTFSDSDLVLGAVRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         ++  +  +      +    +        Y     +S      +   L
Sbjct: 99  ARGYVVKDVLGMDLKRSIRAVARGEVAMDPKVV-------GYLMQQMRSPSADKEERIPL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++  +  +++G T+ EIA  + +S  TV  Y+A  MR+   K R  A   A +N  +
Sbjct: 152 NRQQLAIIRLVAQGYTNREIAERMFLSEKTVKGYLAEAMRRMGVKNRVEAAMVASKNGWI 211


>gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 230

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            +  + +    D       +   +     +  + E   GA    + R +      LD  +
Sbjct: 14  PAAPTRILLADDHALVRRGVRLILDGEPDLTVVAEAGDGAEAIEMARAERPDLVILDIAM 73

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R +          V+     L   ++                Y   +    
Sbjct: 74  PRLTGLQAAREL--------SRVMPGLRILMLTMYDNEQYFFEALKAGAAGYVLKSVADR 125

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +             +    +  +        +  K  +    +    T RE E L  ++
Sbjct: 126 DLVEACRAAMRDEPFLYPGAVTALI---RNFLDRAKDGEDLPARAI--TEREEEILKLVA 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG +S EIA +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 181 EGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 228


>gi|294630527|ref|ZP_06709087.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292833860|gb|EFF92209.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 206

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 15/210 (7%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            L   ++   R+  + E   G       R        +D  +      +  R +      
Sbjct: 5   GLRTLLAAQPRITVVGEAADGVEAVERARLLRPDVVLMDVRMPRRNGIEATRRLLAE--- 61

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                   P  +    F          +   + +      V +I   + ++     I+  
Sbjct: 62  CADP----PKVVVITTFENDDYVTAALSAGASGFVLKRRPVRQIAEAVRIVAAGETILFP 117

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
             L ++                       LT RE   L  ++ G+++ EIA  L +S  T
Sbjct: 118 AALRQMVTARPL-------SSAEALPKAALTEREEAVLRLMATGQSNPEIARALTVSLET 170

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++ +++ K   + R+ A+  A  + +V
Sbjct: 171 VKTHVGNVLSKLGAQNRTHAVVIAYESGLV 200


>gi|297563666|ref|YP_003682640.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848114|gb|ADH70134.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score =  115 bits (288), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 65/237 (27%), Gaps = 30/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + L  + E     V+ L    D +  +           R+  +              
Sbjct: 12  RIRVFLVDDHEVVRRGVAALLETEDDMTVVGEAGTAEQALSRIPVVL------------- 58

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       + R +     +           L    F             
Sbjct: 59  --PDVAVLDVRLPGGSGVQVCREIRSDHPEIAC--------LMLTSFADEDALYDAVMAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       A +   +  +   G ++       +           +          EL
Sbjct: 109 AAGYVLKQIHGADLVGAVRTVASGGSLLDSGSTGAM-------LERLRGAQAEPDPLAEL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T +E + L  I EG T+ +I   L ++  TV NY+++++ K   K R+ A       
Sbjct: 162 TPQERQILDLIGEGMTNRQIGERLYLAEKTVKNYVSALLSKLDLKRRTQAAVLVAEL 218


>gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
 gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR
 gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus
           JCSC1435]
          Length = 209

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +   +       + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQSDIEIVGEGESGKDAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L     +    F    E         
Sbjct: 48  KPDLILMDLLMDDMDGVEATTQIKKD--------LPHIKVVMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   F    +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIADAVRKTFNGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|109898765|ref|YP_662020.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109701046|gb|ABG40966.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 214

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + E   + +  +         +                    G       R +
Sbjct: 2   IKILLVDDHELVRTGIRRILEDVQGFVVVGEATT---------------GEEAVKFCRKN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +            +    +   V    P          
Sbjct: 47  APDLVLMDMSMPGIGGLEATKQILRFS--------ENTRVIVLSVHKENPIPAKVMRMGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   + + +  +    + +  D   +I + A   ++              L+
Sbjct: 99  FGYLTKDSDPKEMELAIRKVAAGQKYVSPDIAQQIAIGALDFSD--------GNPFESLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G    +IA  L IS  TVN +   +  K    T       A+R+ ++
Sbjct: 151 ERELEITLMLTKGSKVPDIAKFLNISAKTVNTHRYRMFEKLNVSTDVELTHLALRHKLI 209


>gi|332161247|ref|YP_004297824.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325665477|gb|ADZ42121.1| GerR-family transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861302|emb|CBX71545.1| transcriptional regulatory protein uhpA [Yersinia enterocolitica
           W22703]
          Length = 209

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 28/229 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--LDSI 77
            + +          A+++ L+  +       +  E                     +D  
Sbjct: 4   VALIDDHIVVRSGFAQLLSLEKDIRIIGEYGSAAEAW-------ANLPNTDVHVAVMDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +           + +   +   ++ T     +      + Y +     
Sbjct: 57  MPDESGLSLLKRLRQK--------MPQFRAIILSIYDTTAFVQSAMDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +   G  +  D L  +           +       +   LT RE E    +
Sbjct: 109 DELVQALRTVHGGGLYLCADALRAL-----------RHMPQQPQQLAILTPREKEVFQLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G +   IA  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 158 INGISVKSIAEQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
 gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 208

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +  + +    +  +   +                       +  +
Sbjct: 1   MRVLIVEDDPMMQLGLEQVLSDCPDITLVGIAEDG--------------------YLGVE 40

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +E+K D ++       L    A  +  +    ++              E +   +   
Sbjct: 41  AAKEKKPDIVIMDIGLPRLDGIAATKQIKEILPEIRVVMLTSHTA---ETEVLASLSSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC     V  + + +   +     +                   K           L+
Sbjct: 98  DAYCVKGASVDSLIVAIQAAYEGATYLDPQVARV-------VMEHLKPPTPQTN-LGTLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  + EGK++ EIA  L +S NT+  ++  IM K A   R      A+R+ +V
Sbjct: 150 PRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208


>gi|291299471|ref|YP_003510749.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568691|gb|ADD41656.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 66/228 (28%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     L  ++     +         T   GA+    V         +D  
Sbjct: 2   IRVVVVDDEPMVCAHLRTILGSANDIEVID-----TALDGAAGVEAVVRHRPDVVLMDLR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +  +A           + P  +    F      +         +   +   
Sbjct: 57  MPGVDGLTAIERIAKLP--------EPPKVVALTTFDADHYVLRALRAGAMGFLVKSTPP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + +      ++          + A  A+   + D       ELT RE E L  +
Sbjct: 109 EDLIGLVRVAADGHVVLSPVAARR---MVAASADEQSTRDELRSLVGELTERETEVLARL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ EI   L +S  TV  Y++ ++ K     R+ A   A    +
Sbjct: 166 GEGLSNAEIGKRLYLSEATVKGYVSRLLLKLGCDNRTQAGLLARDAGL 213


>gi|284032390|ref|YP_003382321.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811683|gb|ADB33522.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 228

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +      +  +               L               
Sbjct: 3   LKVLLADDQAMIRRGLRLILEDQPDITVVGEAADGAEAIELARRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++ R +A         +      +    F           G  
Sbjct: 48  RPDVCLVDIRMPKLDGLEVTRALA--GPQVKDPI----RVVVVTTFDLDEYVYGALRGGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A +   +        ++       + LL+   A   +          EL+
Sbjct: 102 AGFVVKDAGPALLVEAVRAACNGEALVSPSIT--LRLLSHLNATAPRGRG---MPSPELS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GR +E +  I+ G+T+ EIA  L IS +TV +++A+I  K   + R+    +A  N++V
Sbjct: 157 GRALEVVRAIARGRTNQEIAAELFISLSTVKSHLAAIQAKLGVRNRTEIAVWAWENHLV 215


>gi|332306859|ref|YP_004434710.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174188|gb|AEE23442.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 214

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + E   + +  +         +                    G       R +
Sbjct: 2   IKILLVDDHELVRTGIRRILEDVQGFVVVGEATT---------------GEEAVKFCRKN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +            +    +   V    P          
Sbjct: 47  APDLVLMDMSMPGIGGLEATKQILRFS--------ENTRVIVLSVHKENPIPAKVMRMGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   + + +  +    + +  D   +I + A    +              L+
Sbjct: 99  FGYLTKDSDPNEMEMAIRKVAAGQKYVSPDIAQQIAIGALDFTD--------GNPFECLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G    +IA  L IS  TVN +   +  K    T       A+R+ ++
Sbjct: 151 ERELEITLMLTKGSKVPDIAKFLNISAKTVNTHRYRMFEKLNVSTDVELTHLALRHKLI 209


>gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
 gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales
           bacterium 1_1_47]
 gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella
           excrementihominis YIT 11859]
          Length = 214

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 68/234 (29%), Gaps = 29/234 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  +       V  L         +       +  + +                    
Sbjct: 7   IIVVDDHPLFRRGVIQLLKMDPSFNVVAEAGDFEAAMVAVRE---------------RDP 51

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +++  +       +   ++    +   V  +  + +       + 
Sbjct: 52  DIVLLDLNMKHTSGVEILTAIKT-----FDPSIR---VIMLTVSDSPSDLLQCFQNGADG 103

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     +  +I   +        ++       +           +       +  ELT R
Sbjct: 104 YLLKDQEPEQILEDIQKAAKGQTVLSASMNQALAECLR------EESFSKERRVSELTER 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E   L  I++GKT+ EI   L IS  TV  ++  ++ K + ++R  A  +A   
Sbjct: 158 EKSVLKLIAQGKTNKEIGKALEISDGTVKVHVKHVLHKLSFRSRVEAAVWAKEQ 211


>gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 200

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L    D +  +            + +L               
Sbjct: 2   IRIILVEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +                 +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKENS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis
           BCW-1]
          Length = 262

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 21/239 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L          +  L      L                  L               
Sbjct: 2   ITVLLADPHALHRLGLRTLLGPRPGLTIAGEATTGAETARMHERL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 L S +        VR +  +           P  L     H             
Sbjct: 47  RPDVVLLGSGLPPTDVTTTVRRLRQTRTPDSGP----PRILVLSSAHRDEHAYDVLRAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   T     +   L  +     ++       +     +         +  G+  +LT
Sbjct: 103 DGFLPATTTPDELIAALFTVAAGDAVVSPGLARALIHAVRHGPR--PEVPIAKGRLEDLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G+++ EIA  L I+  TV ++++ I+ K   + R  A+ +A  + +V
Sbjct: 161 ERERDILVAVASGRSNAEIAAQLSIATTTVKSHVSRILTKIGARARVQAVVFAYESGLV 219


>gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 211

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L   +          E   G    +L     +    LD  +     
Sbjct: 3   HILLAEDQGMVRHGLKMMIETDTEFKVTGEASNGKEAVMLCEQHRYDLIILDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +     D                F+     +         Y     +   +   
Sbjct: 63  LEAARLIRSRWPDM--------KVFILTTFNDDNYALEALKSGACGYMLKDAEPEELIRS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  +           A     + K        D  LT RE++ +  I EG+++
Sbjct: 115 IRSCLAGGLSLQDHVA------AKVMPRLIKQSTEEVKVDPSLTPRELDIIRKIGEGRSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA+ L +S  TV N+I+ I+ K   + R+    YA+++++V
Sbjct: 169 KEIAMQLSLSVGTVKNHISIILDKLELRDRTQIAIYAIKHHVV 211


>gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 66/230 (28%), Gaps = 19/230 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V         L R++ +                 G+     V         +D 
Sbjct: 13  AIRVLLVDDQELIRTGLRRILRVRDGFHIVGEC-----ADGSEVPAAVAEHSPDVVVMDL 67

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            + +         +A             P  L    F                +      
Sbjct: 68  RMRNVDGITATSMLAALN----DP----PPVLVLTTFDDDKLLSGALRAGAAGFILKDSP 119

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +   G  +       +           +S         ELT RE + L  
Sbjct: 120 AESLIWAVRAVVRDGAFLDPAVTGRV------LTGYRRSTTGDIATPDELTERETDVLRL 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G+T+ EIA  LGIS  TV ++I  I  K   + R+ AI YA  +++V
Sbjct: 174 VARGRTNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIVYAFDHSLV 223


>gi|227549911|ref|ZP_03979960.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078007|gb|EEI15970.1| possible nitrate/nitrite response regulator protein NarP
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 215

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 66/249 (26%), Gaps = 46/249 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + V               L            + E         +   
Sbjct: 1   MKVFLVDDHSVFRAGVR------------AELASRFDIAGEAGTVAEA-----VRGINAH 43

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +++            V      L   V     + I       
Sbjct: 44  EPDVVLLDVHMPDGGGLAVIKG-----------VAASTKFLALSVSDAAEDVIALIRAGA 92

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y +       +   +  +                 LA +  + F S  V    + E  
Sbjct: 93  RGYVTKNIAGDELAEAIERVHGGDAYFSPR-------LAGFVLDAFASGGVVEDPEGEPV 145

Query: 186 ---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT T  R   
Sbjct: 146 KVEGPLVDALTRRELEVLRLLARGYTYKEIGAQLFISVKTVETHASNILRKTQTSNRHQL 205

Query: 237 IAYAVRNNI 245
             +A    +
Sbjct: 206 TRWAADRAL 214


>gi|300723489|ref|YP_003712794.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus nematophila ATCC 19061]
 gi|297630011|emb|CBJ90646.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus nematophila ATCC 19061]
          Length = 219

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     V  +      +  +   +          +                
Sbjct: 2   INVLLVDDHELVRIGVKGILDDVKGIKVIGEANSGEDAVRWCRS---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++       +    A  +  +Y   ++    +   +               
Sbjct: 46  ----SSTDVVMMDMGMPGIGGLEAAKKIMRYSPDIK---VIMLTIQTESSLPTKVIQAGI 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L                     L+
Sbjct: 99  RGYLSKAATPQDMINAIRTVYTGQRYISPDIAQQMALNQL--------LPQKENPLDGLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +T I++G+  +EI+ +L +S  TVN+Y   +  K   K        A+R  ++
Sbjct: 151 ERELQIMTMITQGRKVNEISTLLNLSPKTVNSYRYRMFSKLNIKGDVELTHIAIRCGLL 209


>gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
 gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185]
          Length = 151

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 11/156 (7%)

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITP---PAGMDNRYCSLTFDVARIRIGLMLLFP 149
              +    ++Q   E    V  +  ++             Y   T   + I   +   + 
Sbjct: 2   DGVEATRAIIQEWPEAKIVVVTSFLDDEKLYPVIEAGATSYLLKTSRASDIADAVRATYD 61

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++      ++        +  +        D +LT RE E L  I+EGK++ EIA  
Sbjct: 62  GETVLEPKVTGKM-------MSRMRQKKEQPLHD-DLTEREFEILLLIAEGKSNQEIADE 113

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L I+  TV  ++++I+ K     R+ A+ YA R+ +
Sbjct: 114 LFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQL 149


>gi|284030063|ref|YP_003379994.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809356|gb|ADB31195.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 220

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 64/226 (28%), Gaps = 18/226 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                   +    LA ++  D  +             G     L          +D  + 
Sbjct: 7   VVVAEDQSSVRAALAELVGSDPALDLLG-----CGATGDEAIELATRLHPDVVLMDIRMP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                   R             L     L    F                +   +  V  
Sbjct: 62  GTDGLTATRV--------VCARLPATKVLVLTTFDLDEYVYEALGAGATGFLLKSAPVTD 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +     ++  +    +  +A       +     +    +L+ RE+E +  +  
Sbjct: 114 ILRAIHTVHEGQAMLSPEITRRL--IAEVSRGRTRRTPEAFE---QLSPRELELVGAVLR 168

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G +++E+A  L +S +TV  Y++ I  K   + R+  +  A  + +
Sbjct: 169 GLSNEELAAELFLSLSTVKTYLSRIFSKLDVRDRTQLVILAYESGL 214


>gi|293606796|ref|ZP_06689147.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292814800|gb|EFF73930.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 221

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 17/226 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSS 80
            V  +    D       L   +     +    E   G+    L+    +    LD  +  
Sbjct: 4   IVISVMLADDHTLLREGLRRLLEQAGDIRVQGEAGNGSEALQLLGQRAWDLLVLDMSMPG 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               DL+R +     D           L   +               + Y +       +
Sbjct: 64  RDGVDLIRQIKHCHPD--------LRILVLTMHGEQQYAAQAIKAGASGYLTKDSAADEL 115

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   GR +       I           +           L+ RE+     ++ G
Sbjct: 116 VQAVRKVAAGGRYLSPSLAESIA--------FERQEHSDVLPHLLLSDRELSVFRHLASG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +IA  L +S  TV+ Y + I+ K   + ++  + YA+R++++
Sbjct: 168 LNNSDIARRLFLSDKTVSTYKSRILTKMNLRNQTDLVRYAIRHHLI 213


>gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 252

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 18/231 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              D +     ++             E +G   F+ V+      ++   +          
Sbjct: 11  RAFDTINDAQQVESIPELEAVFAKTLEPLGVDVFVGVQIADPLRERHVEVTFGRTHAAWQ 70

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLP--------------ENITPPAGMDNRYCSL 133
                        +++       P+F +                       G++    + 
Sbjct: 71  AHYEAQGHAARDPIVREMLRSTEPLFWSDLPARRGALKPDEARVMEEARSFGLNEGLMTP 130

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGR 189
              V      ++++  +      D    + LL+ Y  ++ +           +  +L+ R
Sbjct: 131 LHHVDGSVSAVLMMGERLASDAPDTRAALHLLSIYYGSLARKLRQRNDGGEPQKAKLSAR 190

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ECL W  EGK+S  I  IL +S  TV+ ++AS  RK    TR  A+A A
Sbjct: 191 QIECLRWAREGKSSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241


>gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family
           [Leptospirillum rubarum]
          Length = 211

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 16/187 (8%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
             L+ R        +D  +  +      R +  +              +   V     E 
Sbjct: 41  RILVDRKAPVDVVIMDIGLPGESGITATRVLRQAR--------PEVRVVMYTVHRVEAEI 92

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
            +  +   + YC     V  + + +         +          +A    N  +  D  
Sbjct: 93  FSSFSAGADGYCLKDTTVDSLLLAIRAAGMGSVYLDPA-------IAHLALNRIRVLDYP 145

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  L+ RE E L  +S+G ++ EI  I GIS +TV  +I SI+ K +  TR+ A   
Sbjct: 146 AN-DNPLSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVK 204

Query: 240 AVRNNIV 246
           A++  ++
Sbjct: 205 AIKKGLI 211


>gi|324114391|gb|EGC08360.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 214

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 31/240 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       +  L         +                    GAS   L
Sbjct: 3   ETTPFQVLIVDDHPLMRRGIRQLLELDPAFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRLDLDLILLDLNMKGMSGLDTLNALRRDGVT--------AQIIIITVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     +   +   +      G++            + Y     + +       
Sbjct: 100 DAGADGYLLKDSEPESLLAAIQKGANGGKVFSARV-------SEYLRERER-FGSKDDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L  +++G ++ +IA  L IS  TV  +I +++RK   ++R  A    +++
Sbjct: 152 STLTERELDVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAATILFLQH 211


>gi|271500356|ref|YP_003333381.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270343911|gb|ACZ76676.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 215

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 17/229 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            T+  S +    D       +   +S    +  + E   G     L          LD  
Sbjct: 1   MTNDASTVLLIDDHPMLRNGVKQLLSMAPDLCVVGEASEGEQGVTLAEQLDPDLILLDLN 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  +  +       V          V +   + I+      + Y     + 
Sbjct: 61  MPGMNGLETLARLRETSLSGRIVVF--------TVSNHEEDVISAFKSGADGYLLKDMEP 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
             + + L        ++       +           +       +D + LT RE + L  
Sbjct: 113 EDLLVALHQAAAGKMVLSDTLTPVLA-------ASLRETRSTDTRDIQQLTPREKDILKL 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I++G  +  IA  L I+ +TV  ++  +++K   ++R  A  + V+  I
Sbjct: 166 IAQGLPNKVIARKLTITESTVKVHVKHLLKKMKLRSRVEAAVWVVQEKI 214


>gi|163816627|ref|ZP_02207990.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
 gi|158447884|gb|EDP24879.1| hypothetical protein COPEUT_02817 [Coprococcus eutactus ATCC 27759]
          Length = 217

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIV+  +D+     +  +    D +                 + T   G+    L    
Sbjct: 1   MNIVIVDDDQLVALSLQTILEADDNIHV---------------SATGCSGSEAVRLYNKY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +  +  D           L    F      I   +   
Sbjct: 46  SPDVLLMDIRMEDMNGLEASEIIIAAHPD--------ARILLLTTFSDDEYIIKALSLGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--ANMFKSYDVHWGKDFE 185
             Y     +   I   +  ++    +   + + ++  L  +    +            +E
Sbjct: 98  KGYILK-QNFECIAPAVNAVYNGQTVFGEEIIGKLPDLLGHSESHSTDVERSPFADTQYE 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ +E++ +  +++G  + EIA  L +S  TV NYI+SI+ K   + R+    +  +N
Sbjct: 157 ISSKEMDIIRLVADGLNNKEIASRLFLSEGTVRNYISSILDKLCLRDRTQLACFFYKN 214


>gi|88813711|ref|ZP_01128937.1| response regulator [Nitrococcus mobilis Nb-231]
 gi|88789030|gb|EAR20171.1| response regulator [Nitrococcus mobilis Nb-231]
          Length = 212

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + +   + +  + + ++ +  +            +  L               
Sbjct: 2   IRVVLVDDHQLVRTGIRRILSEAEEIEVIGEAASGEQALDVIRQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++   +   +    A  +  +    L+        V+   P          
Sbjct: 47  -----RPDMVLMDVYMPGIGGLEATRKLLRIDPALKIL---ALTVYGNEPYPSRLLEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    R I      E+ L                     L+
Sbjct: 99  LGYLTKDCSEQDMLSAIRTVARGERYICSRIAREMALSGLE--------GQSKNPFARLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+EG+   EI+  L +S  TV+ Y   +  K            A+R  ++
Sbjct: 151 HREIQVMIMITEGRRLYEISEALCLSPKTVSTYRYRLYEKLGVANDVELTRLAIRFGMI 209


>gi|325285645|ref|YP_004261435.1| LuxR family two component transcriptional regulator [Cellulophaga
           lytica DSM 7489]
 gi|324321099|gb|ADY28564.1| two component transcriptional regulator, LuxR family [Cellulophaga
           lytica DSM 7489]
          Length = 222

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++IVL  +       +  L      L  +  +                 G     +V   
Sbjct: 5   ISIVLADDHSLVRDGIRSLLEEEKDLVVVAEVSN---------------GKEAIDIVEEK 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D V  +                 +   +  +    +       
Sbjct: 50  KPDLLIIDIRMPVMNGIDAVEVLNKKGS--------ITKTIILSMHDSEEYILKSVDAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFE 185
           N Y             +  +   G+    D    +   LL    A+       +    F+
Sbjct: 102 NGYLLKDTGKVEFIKAIHTVQQGGKYFSGDISNVLVNNLLHNKTASETVKTSKNNSNPFD 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E++ L  +  G T+ +I+  L  S+ TV  +  ++MRK   K        A + N+
Sbjct: 162 LTSKELQVLELVLTGLTNKQISEKLQNSKRTVETHRFNLMRKMEVKNLIDLSKKAQQYNL 221

Query: 246 V 246
           V
Sbjct: 222 V 222


>gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 225

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     +  + E   GA    + R +      LD  +    
Sbjct: 13  TRILLADDHALVRRGVRLILDGEPDLQVVAEAGDGAEAIEMARSERPDLAVLDIAMPRLT 72

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +           +     L   ++              + +   +     +  
Sbjct: 73  GLQAAREL--------SRTMPELRILMLTMYDNEQYFFEALKAGASGFVLKSVADRDLVE 124

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      +    +  +        +  +       +    T RE E L  ++EG +
Sbjct: 125 ACRAAMRDEPFLYPGAVTALI---RNYLDRVREGGDVPARAI--TEREEEILKLVAEGHS 179

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EIA +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 180 SKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 223


>gi|302560744|ref|ZP_07313086.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478362|gb|EFL41455.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 64/229 (27%), Gaps = 16/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  A ++     +    +        G     L R +      +D  
Sbjct: 3   IRVLLADDQTLVREAFAMLVESAPDMEVVGQA-----ATGRQAAELARTERADLVVMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +A          L     L    + T    +       + +       
Sbjct: 58  MPDLDGIAATRLIAA------DEDLAGVRVLVLTTYDTDENIVDALRAGASGFLVKDTRP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +     ++       +            +          L+ RE E L  +
Sbjct: 112 AELLDAIRTVAAGDALLSPGPTARLIERFLRTPPAPVTAGPEC-----LSDREREVLALV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G  + EIA  LG+S  T   +++ IM +   + R+  +  A  + +V
Sbjct: 167 ARGLNNTEIADSLGLSPLTAKTHVSRIMGRLGARDRAQLVIVAYESGLV 215


>gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 244

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D V+    +       V
Sbjct: 12  NEDIKNYIQRRIKAYGDLRYSYLVMNK--KTPLHPTIISNYPLDWVKKYKKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +    +   P                    +     + N Y  +  D +     L +   
Sbjct: 70  ILTAKDKVAPFAWDDNSVINKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNG 129

Query: 150 KGRIILRDRLWEI-----GLLAAYQANMF-----KSYDVHWGKDFE-----LTGREVECL 194
               I  D   EI      +L              + D +  ++ +      + RE E L
Sbjct: 130 SDDSISFDESIEINKEKIQMLLILTHEKMLGLYQSNSDKNENRNPKIERDIFSPRENEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W S GKT  EI++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 190 YWASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 240

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSE 94
           +   +   +    + +L    G   F+L      +E+ ++ I       F     +    
Sbjct: 17  IDAAETFQTIQTEVRSLVAPFGYDRFVLFSASAAREEPIERIYWIEGDWFGNGDPVTEET 76

Query: 95  KDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIRIGLM 145
             +   + +       P F          L   +  P G   +      F  + +   + 
Sbjct: 77  YIRRCAITRHILGAREPFFWTKTFRENGELYRVVNLPRGPGIHGLQVPVFGPSGLEGAMS 136

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTS 203
           L             W + LLA       +             L+ RE E LTW + G+  
Sbjct: 137 L-GGTQINASPTTKWILTLLAVAAFYSARKLIEAPVASAIAVLSDREREVLTWTAAGRRQ 195

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  LG+S  T+ N++  I  +    T + AI  A+RN 
Sbjct: 196 FEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNG 236


>gi|293410555|ref|ZP_06654131.1| transcriptional regulator NarP [Escherichia coli B354]
 gi|293446543|ref|ZP_06662965.1| two-component system [Escherichia coli B088]
 gi|291323373|gb|EFE62801.1| two-component system [Escherichia coli B088]
 gi|291471023|gb|EFF13507.1| transcriptional regulator NarP [Escherichia coli B354]
          Length = 236

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 24  EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 68

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 69  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 121 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 172

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 173 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 228


>gi|302554629|ref|ZP_07306971.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472247|gb|EFL35340.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 235

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 56/188 (29%), Gaps = 8/188 (4%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPE 118
            R  +    +      +  P +  R  A            R        +    +     
Sbjct: 46  ARRRVGDRGRCRRGDHAAVPGEPDRRRASLAAPARDPGRIRAEYPGTQVVVLTTYADDES 105

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                A     Y +       I   +  +      +       +    A       +   
Sbjct: 106 LFPALAAGARGYLTKDAGGEVIVRAVHSVLSGEAGLSPSVQRRLLERLAEGGTRPPAPPE 165

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE E L  I++G ++ EIA  L +S  TV  +I ++  KT  K R+ A+ 
Sbjct: 166 VPD---GLTARETEVLVLIADGLSNQEIARRLHVSTATVKTHINNLFTKTGLKDRAQAVR 222

Query: 239 YAVRNNIV 246
           YA    +V
Sbjct: 223 YAYGKGLV 230


>gi|116254846|ref|YP_770682.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|19338425|emb|CAD19127.2| two-component response regulator [Rhizobium leguminosarum bv.
           viciae]
 gi|115259494|emb|CAK10632.1| two-component response transcriptional regulator of mctP [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 214

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 67/243 (27%), Gaps = 35/243 (14%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ ++L          +  +    D    +            +             +
Sbjct: 3   ERPKIRVLLIDNHPLVLDGLKAVLETFD---HIEVAGTAGLAQTGLE------------I 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R  L Q   +D  +      D +              L +   +   +  +     +  
Sbjct: 48  GRQILPQVVLMDINMPKLSGIDAIELFRNE--------LPQARVVMLSMHDSREYISSSV 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   +  +   G          +              +      
Sbjct: 100 MHGAAGYILKDVSTDEIVSAIETVAGGGTYFSSGVFDALM------------GERVEEGS 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  I  G+++ EIA  LGI+  T   +  ++ +K    T +G I YA+ +
Sbjct: 148 DPLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGITTTAGLIRYALDH 207

Query: 244 NIV 246
            IV
Sbjct: 208 GIV 210


>gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2]
 gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2]
          Length = 199

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   ++    M  + +   G       +        +D  +      +  
Sbjct: 7   AEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGKTGLEAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  +              +    F                Y         +   +  +
Sbjct: 67  EELKDTG----------CNIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   + + ++   A                   LT RE E L  +++GK + EIA
Sbjct: 117 MKGKRIYAPELMEDMYSEAN-----------------PLTDREKEVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI+ I+ K   K R  AI  +     
Sbjct: 160 QELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197


>gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 199

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 65/218 (29%), Gaps = 24/218 (11%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   +S    M  +     G    +LV         +D  +      D  
Sbjct: 3   AEDQGMLLGALRSLLSMEDDMEVVGLAKNGEEAVMLVEEHQPDICVMDIEMPVKTGLDAA 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             M  S  D           +    F                Y      +  +   +  +
Sbjct: 63  EEMHGSGSD--------CKVIILTTFARPGYFERARKASVRGYLLKDSPIEELVSAIRTI 114

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   +       L  +              +  LT RE + LT ++EGKT+ EIA
Sbjct: 115 MDGKRIYAPE-------LVDFVYE--------DDSENPLTERESQVLTLVAEGKTTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S  TV NYI++I+ K     R  AIA       
Sbjct: 160 AELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 197


>gi|162418425|ref|YP_001606567.1| LuxR family DNA-binding response regulator [Yersinia pestis Angola]
 gi|162351240|gb|ABX85188.1| DNA-binding response regulator, LuxR family [Yersinia pestis
           Angola]
          Length = 210

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S   + +           ++                 + 
Sbjct: 4   SVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                  F    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFTGKSP--------FLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|117620574|ref|YP_857279.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561981|gb|ABK38929.1| response regulator UvrY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 214

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +  +                    G +     R  
Sbjct: 2   INVFLVDDHELVRTGIRRILEDVRGIKVVGEAQS---------------GETAVTFCRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  HPDVILMDMNMPGIGGLEATRKILRIRPD--------VRIIVLTIHSENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + L+    R I  +   ++ L     A+              L+
Sbjct: 99  AGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADE--------NPFKSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRYGML 209


>gi|84394223|ref|ZP_00992951.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|86148831|ref|ZP_01067096.1| response regulator [Vibrio sp. MED222]
 gi|148982309|ref|ZP_01816707.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|218709938|ref|YP_002417559.1| response regulator [Vibrio splendidus LGP32]
 gi|84375137|gb|EAP92056.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|85833382|gb|EAQ51575.1| response regulator [Vibrio sp. MED222]
 gi|145960543|gb|EDK25902.1| response regulator [Vibrionales bacterium SWAT-3]
 gi|218322957|emb|CAV19134.1| Similar to transcriptional regulator, LuxR family [Vibrio
           splendidus LGP32]
          Length = 214

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      +                          +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEAESGEDAAKWCRT---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  NTDVILMDMNMPGIGGLEATKKILRFNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDISGDVELTHLAIRHGML 209


>gi|311739592|ref|ZP_07713427.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305408|gb|EFQ81476.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 225

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 10/221 (4%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D +  +  +   +S    M  + +   G                +D  +        
Sbjct: 5   LVDDQVLFLHGIAQIISSQPDMDVIWQANDGEDALTQCAATPADVVLMDVQMPVRDGISA 64

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +A +        L     +    F      +       + +     +   +   L  
Sbjct: 65  TAEIAST--------LPETKVIILTTFDDEDYVVAGLRAGASGFVLKDAEPEELLSALRT 116

Query: 147 LFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++    +I       +   +     +              LT RE E L  I  G ++ E
Sbjct: 117 VYRGDAVISPRATKRLVHSMRDDSTDTLSISGADRRVLESLTAREQEILEAIGMGWSNTE 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   + IS  TV  ++  ++ KT+++ R  A  +A R  +V
Sbjct: 177 ICERMFISMPTVKTHVGRVLAKTSSRDRVHAALFAYRTGVV 217


>gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 225

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 71/240 (29%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  +D      +    + +  L  +   +                G     + + 
Sbjct: 17  PLRVVIVEDDPMMQLGLEQSLSTNPQLELVGQAED---------------GYMGVEMTKQ 61

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +         + +           L     +      T  E I   +  
Sbjct: 62  LQPDIVVMDIGLPRLDGIAATQQIKAE--------LPEVRVVILTSHTTDREIIASLSSG 113

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + YC     V R+   +         +          +               G    L
Sbjct: 114 ADAYCVKGSSVERLLQAIAAAAEGATYLDP-------QIGRQVLKHLSP-PSPTGNVSNL 165

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I EG ++ EIA  L +S NTV  ++  IM K +   R  A   A+R+ IV
Sbjct: 166 SQRELEVLKLIVEGNSNPEIAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSGIV 225


>gi|156933491|ref|YP_001437407.1| response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|260598408|ref|YP_003210979.1| response regulator [Cronobacter turicensis z3032]
 gi|156531745|gb|ABU76571.1| hypothetical protein ESA_01309 [Cronobacter sakazakii ATCC BAA-894]
 gi|260217585|emb|CBA31835.1| Response regulator uvrY [Cronobacter turicensis z3032]
          Length = 218

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +                       G       R  
Sbjct: 2   INVLLVDDHELVRAGIRRILEDMKGIKVAGEA---------------CCGEDAIKWCRIH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A    D           +   V    P          
Sbjct: 47  PVDVVLMDMNMPGIGGLEATRKIARYSSDI--------KVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S     A +   +  +    R I  D   ++ L            D        L+
Sbjct: 99  AGYLSKGAAPAEVVSAIRSVHAGRRYIASDIAQQMALSQI-------EPDRSESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 79/232 (34%), Gaps = 16/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
              ++ ++       +    M       G         D   +     + +  +P + + 
Sbjct: 4   VDAIMEQIRTAPSRRALWQIMLDFMHDEGVVMGSYHFVDA--DAASVRVAADGFPEEWIC 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRYCSLTF 135
                +      +      +  P +    ++                 +G+ +      F
Sbjct: 62  EYLNRKLALIDPIPALAARMSRPFYWHEIQDLIPPSAQTDAYLDRLRASGLGDGLAFYVF 121

Query: 136 DVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                   + L F +  + +  ++++ +  +A               K+  L+ RE + L
Sbjct: 122 GPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRVCELSDQAPKEAALSPREKQVL 181

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            WI++GK++  IA IL +S +TV+ ++ SI RK     R+ A    V + ++
Sbjct: 182 DWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVL 233


>gi|29830997|ref|NP_825631.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608111|dbj|BAC72166.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 216

 Score =  115 bits (287), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  + E   S  + +      +  +       +    +   +              
Sbjct: 3   ISVVIADDQELVRSGFAMILDAQPDIEVVGEAGDGAAAVAAVRRTS-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R M  S              +    F              
Sbjct: 49  -PDVALLDIRMPGTDGIEACRQMCSSS---------GVRAIMLTTFDADEYVYEALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + ++     ++       +  +A Y     +      G+   LT
Sbjct: 99  SGFLLKDVRRDDLVHAVRVVAAGESLVAPSVARRL--IADY-TRRGRRTAPVSGRLDVLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  + +S +TV  ++ +++ K A + R  A+  A    +V
Sbjct: 156 ARERETLLHLAHGLSNAEIAAAMVVSEHTVKTHVGNVLSKLALRDRVQAVICAYETGLV 214


>gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272]
 gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227]
          Length = 215

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 212

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 13/219 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L    +    M    E   G     L          +D  +      
Sbjct: 4   VLIVDDQRLVRAGLRMLCAAAEDMTVAGEASNGVEAVALAAELDPDVILMDLRMPGLDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +  +         +R   L    F          A   + +     + A +   +
Sbjct: 64  GATQQIVKAG--------RRARILVLTTFDDDDHLYPALAAGASGFFVKDTEPAELLGAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +   + L  +   A          D    +   LT RE + L  ++EGK++ 
Sbjct: 116 RRIAEGEMVFTPELLRRVVDRAVIGG----IADTAATEKVPLTDRESQVLALVAEGKSNQ 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L +   TV  ++A++M KT    R     Y ++N
Sbjct: 172 EIAETLHLGVTTVKTHVANLMSKTGCDNRVRLAVYHLQN 210


>gi|332666515|ref|YP_004449303.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335329|gb|AEE52430.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 236

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 64/251 (25%), Gaps = 35/251 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  + E     +  L    + +  +      V     +                  
Sbjct: 7   IRIVLADDHELIRDGIKSLLEDIEGIEVVGEAADGVEALREV---------------AKH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    D VR +                 L   +  +    +       
Sbjct: 52  QPDLLIVDIRMPNKNGIDTVRELNAHGSV-------HTRALVLSMHDSEDYVLQSIEAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-------EIGLLAAYQANMFKSY---D 177
             Y             +  ++   +    D          E   +     ++       D
Sbjct: 105 YGYILKGAAKDEFLKAIRTIYQGEKYFSGDISQIIVNKYLEKLQIPNSAPSLLPPTHVED 164

Query: 178 VHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 F+   LT RE++ L     G ++ EIA  L  S  TV  +  ++M+K   K   
Sbjct: 165 TSSDASFQPLFLTKREIQILKLAISGHSNKEIAEQLDKSVRTVEAHRFNLMKKLKAKNLM 224

Query: 235 GAIAYAVRNNI 245
                A    +
Sbjct: 225 ELSVKAHELKL 235


>gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 215

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                +D ++      +  R +           + +   L    F T 
Sbjct: 38  GNEAVEKACALQPDVVLMDLVMPGMDGIEATRLIKQR--------VPQVQVLVLTSFSTN 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + I   +     Y         +   +  +      +             Y     K+ 
Sbjct: 90  DKVIPSLSAGATGYLLKDASPEELVKAIEQVAQGEGALHPAVTR-------YVLGQIKNM 142

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                 + ELT RE E L ++++G ++ EIA +L +S  TV+ +++ I+ K    +R+ A
Sbjct: 143 PDEPAPEEELTEREKEVLQFMAQGYSNAEIARLLVVSNATVHTHVSRILSKLNVSSRTQA 202

Query: 237 IAYAVRNNIV 246
           + YA++  IV
Sbjct: 203 VLYALKRGIV 212


>gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 242

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 23/247 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE---- 71
           D+Q+ S +   P      AR++ +D        + A     G    +L   D        
Sbjct: 2   DDQQLSTLEDQPK-----ARILLVDDEPGIRTAVQAYLNDEGFD--VLTAIDGEDGLQKA 54

Query: 72  -QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            Q +  +V +D          L  + +    L     +F        +         + Y
Sbjct: 55  KQFMPDVVITDVMMPQCDGYELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDY 114

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD------- 183
               FD   +   +  +  +   +L +            A           ++       
Sbjct: 115 IPKPFDPDELVARVKNVVKRQERLLAEAARFADTDVGQMAKQITEIKSMLTQNDSNSSRK 174

Query: 184 ----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                  T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + Y
Sbjct: 175 DLVIPSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRY 234

Query: 240 AVRNNIV 246
           A+ N++V
Sbjct: 235 ALENHLV 241


>gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 230

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 11/192 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G   F  V         +D  +      D  R +          VL          F 
Sbjct: 43  ADGDEVFAAVATTDPDVVLMDLRMKRLGGIDATRQLRSR--PGAPPVL------VLTTFD 94

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                          +         +   +  +   G  +       +            
Sbjct: 95  DDQLLSGALRAGAAGFLLKDSPAEDLIRAVRTVAGGGAWLDPAVTGRVLSAYRTVRPAPA 154

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D    +  ELT RE E L  I  G+ + EIA  LGIS  TV +++  I  K   + R+
Sbjct: 155 RRD---DRLAELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRA 211

Query: 235 GAIAYAVRNNIV 246
            AI +A  + +V
Sbjct: 212 AAIVFAFDHGVV 223


>gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
 gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241]
          Length = 132

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y   T   + I   +   +    ++      ++        +  +       
Sbjct: 15  VIEAGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPL 67

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I+ K     R+ A+ YA 
Sbjct: 68  HE-ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAF 126

Query: 242 RNNI 245
           R+ +
Sbjct: 127 RHQL 130


>gi|315221997|ref|ZP_07863908.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188963|gb|EFU22667.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 210

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L   +     +  + E   G                +D ++     
Sbjct: 2   QILLVDDHEMVRLGLKGYLDLQDDVDVVAEASNGREGVEKALELHPDVIMMDIVMPEMNG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 L    +    +           Y   T     I   
Sbjct: 62  IEATLAILKEW--------PEAKILILTSYLDNEKIYPVLDAGAKGYMLKTSSADDILRA 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I  +   ++     +                +LT RE + L  +++G  +
Sbjct: 114 VRKVAKGELAIETEVSQKVEYHRNHIELHE-----------DLTARERDILGLLAKGYEN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L IS  TV  ++++I+ K     R+ A+ YA ++++V
Sbjct: 163 QRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205


>gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074670|gb|ADJ64069.1| LuxR family two component response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 29/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I+L  +     S +  L T    +  +            +  L               
Sbjct: 3   TRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +R +        Y  ++         + +    +       
Sbjct: 48  KPDLVLLDIAMKGMNGLEALRRLRGE-----YPTIRFLMLSM---YGSEEYVMQALNAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   L  +    + +      E         N  K    +      LT
Sbjct: 100 NGYLFKDSAATELEKALYEVKHGRQYLDSHISREA------LDNYMKRVAQNGTPVEVLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            R+ E L  I+EG  + EIA  L +S  T+  + A +M +   +   G + YA+R  I
Sbjct: 154 PRQREILQLIAEGNNTKEIAYQLNVSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGI 211


>gi|302524738|ref|ZP_07277080.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433633|gb|EFL05449.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 63/225 (28%), Gaps = 16/225 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            T     L    D       L   +     +  +     G      VR        +D  
Sbjct: 1   MTDRPITLVVVDDQATVREALAVMLDLAEDVNVVATATNGEEAVKAVREHSPDVVLMDLN 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +E           T L    F      +       + Y +   D 
Sbjct: 61  MPVLDGVGATGKIRETE--------PGTTVLVLTTFDDDESILAALQAGASGYLTKEADR 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +        ++  +              +          D  LT RE E L  I
Sbjct: 113 TTILHAVRTAAQGQTVLSPEVQRR-------LLALAAKPAPPAEPDLSLTAREREILGLI 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +G  + EIA  L IS  TV  +I ++  K    +R+ A+ YA++
Sbjct: 166 GDGLRNPEIAAALVISEATVKTHINNLFAKAGFHSRADAVRYALK 210


>gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   GA    + R        LD  +     
Sbjct: 8   RILLADDHALVRRGVRLILDGEPGLRVVAEAGDGAEAIAMARSHTVDLAVLDIAMPRMTG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A  +             L   ++                Y   +     +   
Sbjct: 68  LQAARELAALQ--------PGLRILMLTMYDNEQYFFQALKAGACGYVLKSVADRDLLAA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     +    +    L+  Y     ++   H   D  LT RE E L  ++EG++S
Sbjct: 120 CRAAMRGEPFLYPGAVT--ALIRNYL---DRARQGHETPDQILTAREEEVLKLVAEGRSS 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA IL IS  TV  + A+++RK   + R     YA+R  ++
Sbjct: 175 KDIAEILFISVKTVQRHRANLLRKLGLRDRLDLTRYAIRAGLI 217


>gi|145226775|gb|ABP48141.1| putative two-component system response regulator [Rhodococcus sp.
           DK17]
          Length = 215

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E     V+ L T    LA +           R+ AL               
Sbjct: 2   INVFLVDDHEVVRRGVADLLTVDPELAVIGEAASYSQALARIPALI-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +       +         L    +      +       
Sbjct: 48  -PDVAVLDVRLPDGNGIELCRELLSRMPGLHC--------LMLTSYTDDQAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +                  G    LT
Sbjct: 99  SGYVVKDIRGMELTEAVHEVGAGKSLLDSRAAAALMAKLH------SDAHAEDGPFAGLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A + 
Sbjct: 153 DQQRTLLALLGEGLTNRQIAERMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATKM 208


>gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4]
 gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens
           Rf4]
          Length = 250

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 73/218 (33%), Gaps = 16/218 (7%)

Query: 44  SWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                     + +G  H  + L + +          ++  +P + +     +       +
Sbjct: 31  EAGSIANKTRDLIGFDHAVYGLAKLNHHGCITAYETLNFSYPAEWLDAYRTNNFHLLDPI 90

Query: 102 ---------LQRPTELFCP-VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                    LQ   + F          +      + + Y       +    G +      
Sbjct: 91  TTENFKNYSLQYWKDTFNTYDVEAKFLSAALDFRLVDGYAI-GITNSFRTEGCIFSISGP 149

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGK---DFELTGREVECLTWISEGKTSDEIAV 208
                     + LLA +    F+       K      +T RE E L WI +GK+S +I+ 
Sbjct: 150 IKKEPRNELVLNLLAPHLHQAFRQVLSVEKKGKISTTITIREREVLNWIKKGKSSWDIST 209

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IL IS  TV  ++ ++MRK    +R  A+A A+   ++
Sbjct: 210 ILAISERTVKFHVDNVMRKLDAVSRIHAVAVALSVGLI 247


>gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 215

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     LAR+I  D ++             G +   LV     +   +D  
Sbjct: 4   LRVVVVDDQPLVRAGLARIIEADPSIELVGEAGD-----GQTAMALVLRLEPEIVLMDVR 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +  ++             +    F      I       + +       
Sbjct: 59  MPLLDGIAATRKLHEAQSS--------ARIIVLTTFGLDDYVIGALRAGAHGFVLKDAPP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+   +  +     +I       + ++ A      +       +  +LT RE + L  +
Sbjct: 111 ERLLEAIHEVGAGRGVIDPAVT--LPVIRALGTRELRP--EVAARLADLTSRERDVLVLL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +   TV  ++A ++ K   + R  A+  A    +V
Sbjct: 167 AQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRDRLQAVVSAFNAGVV 215


>gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 259

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 66/239 (27%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +D      ++           +            +                 
Sbjct: 44  PVRVLLVDDDAHIRMVIAQEIMNDPRTLVVAQAGSVRDGRKAIRQ--------------- 88

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    +D  +     F+L+  M          ++         V     + +      
Sbjct: 89  HEFDVMLVDLNLGDGEGFELLDMMKTVRPTAEAVII--------SVMENDEQVLRAFELG 140

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y             ++ +   G  +       +                    D  L
Sbjct: 141 ATGYLVKNSWFGNYPQAVLQVANGGASVTPSLARRLLQRFDKTQGAEPKRRTPDEAD-RL 199

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A    +
Sbjct: 200 STREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 258


>gi|303238745|ref|ZP_07325277.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593624|gb|EFL63340.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 13/192 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L          +D ++      +  + +            Q    +    F+  
Sbjct: 36  GEEALNLCGELAPDVVLMDIMMPVCNGVEGTKLIKSK--------FQSIKVIILTTFNDE 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y         + + +  +     I+       +  +A    +  +  
Sbjct: 88  ENISKAIKNGADGYVLKDIKPDDLIVAVKSVAKGFSIMHHTA---LNTVAKQINHDKEPT 144

Query: 177 DVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  F+  LT RE+  +  I +GK++ EIA+ + I+  +V N I +I+ K   K R+
Sbjct: 145 QRKQEPKFDINLTDRELSIIKLIVDGKSNKEIALSIFITEGSVKNIITNILEKLNLKDRT 204

Query: 235 GAIAYAVRNNIV 246
               +AV+NNIV
Sbjct: 205 QLAVFAVKNNIV 216


>gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei
           87.22]
 gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces
           scabiei 87.22]
          Length = 230

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 27/237 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + E     V  L      ++            +R+ AL              
Sbjct: 12  PIRVFLLDDHEVVRRGVRDLLNDEPDISVTGEAGTVEQALVRVPAL-------------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              Q   LD  +       + R +     +           L    F      +      
Sbjct: 58  -RPQVAVLDVRLPDGDGITVCRELRSRMPELAC--------LMLTSFDDEEALLDSIMAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       + +   +  +     ++       +           +  +   G    L
Sbjct: 109 ASGYVLKQIRGSDLVSAVRTVAAGQSLLDPSATARLMARLRQGPQEEREPEALPG----L 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           TGRE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A + 
Sbjct: 165 TGREREILALIGEGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221


>gi|239929404|ref|ZP_04686357.1| two-component system DNA-binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291437730|ref|ZP_06577120.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340625|gb|EFE67581.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 241

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 80/242 (33%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     R++        +  V        + +        ++  
Sbjct: 24  RVRVVLVDDHRMFRTGVQAEIGRTE--------ETGVEVVGEAADVDQA-----VTVITA 70

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A    D    V      L   V     + I    G 
Sbjct: 71  TRPEVVLLDVHLPGGGGVEVLRRCAPLMGDAERPV----RFLALSVSDAAEDVIGVIRGG 126

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T   A +   +  +     +           LA +  + F S D     +   
Sbjct: 127 ARGYVTKTITGADLIDSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 179

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 180 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 239

Query: 245 IV 246
           +V
Sbjct: 240 LV 241


>gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603]
 gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603]
          Length = 209

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +   +       + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGESGKDAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L     +    F    E         
Sbjct: 48  QPDLILMDLLMDDMDGVEATTEIKKD--------LPHIKVVMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIAEAVRKTYHGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 DREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|223934862|ref|ZP_03626781.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896315|gb|EEF62757.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 61/215 (28%), Gaps = 12/215 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +     L   ++    +  + E   G     + R        +D ++ S    +  R + 
Sbjct: 1   MVVRQGLRALLTTEEDIEVVGEAETGRQAVEMARQLNPDVVLMDIVMPSLNGLEAARQIT 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                     +     L    +                Y         +   +  +    
Sbjct: 61  KQ--------MPDCKVLILSSYGDDEYVQRLTEVGATGYLIKQTAADDLLKAIRDVERGK 112

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            +                 +          +   LT RE E L  I+EG+T+ +IA  LG
Sbjct: 113 TVFSPSIASRFQDTRK---DALGKTQTLQLRTEHLTSREAEVLQLIAEGQTNKQIAFELG 169

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  +   +M K      +G   YA+   I+
Sbjct: 170 ISAKTVEKHRQQVMNKLKIHDVAGLTRYALSKGII 204


>gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 241

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 21/230 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
                LL ++      V +   + +         F  +     +  K    + S++    
Sbjct: 3   LVFETLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVSDRVTKPR--LISNYHSGW 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSL 133
                  + ++   V++      CP                    +     G+       
Sbjct: 61  TSHYLRHQYERIDPVIEWARCSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIP 120

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLW------EIGLLAAYQANMFKSYDVHWGKDFELT 187
             D       +     +                EI  +  +     K           LT
Sbjct: 121 LVDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCFHIGVRRKLARGLAVDGVSLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE ECL W ++GK++ EI  ILGI   T   ++ +  +K   +T++ A+
Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230


>gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 246

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 25/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
             +IVL          + H  T +     +                    G     +V  
Sbjct: 18  PTSIVLVNAHALFREGLRHHLTETGEFHVIGEAGN---------------GQQAIQVVDL 62

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  ++  +      ++ R +  +        +   +           E +      
Sbjct: 63  LDPDMVVMEVDLPGVNGLEVARAIKRAHPHIR---IVLLSSTMDG-----QEVVKAIRAG 114

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDF 184
              Y        ++   L  +      I    L   ++              +       
Sbjct: 115 IAAYVPRNIAPEKLLQTLHQVRRGHYPINDLVLSSPDVAAQVLNAFRQMAVDEETQNVYS 174

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L  ++ G T+  IA  L IS  TV N+I+SI+RK A   R+ A+ YA+R  
Sbjct: 175 PLSPRELQVLELVAAGHTNKAIAQSLDISNQTVKNHISSILRKLAVNDRTQAVVYAMRRG 234

Query: 245 IV 246
            +
Sbjct: 235 WI 236


>gi|297559758|ref|YP_003678732.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844206|gb|ADH66226.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 220

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +      +  +                    G     LV   
Sbjct: 2   IRVLLADDEAMIRAGVRAILRSDPEIDVVAEAAD---------------GREAVDLVLSH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +          V      +    F           G  
Sbjct: 47  RPDVALLDIRMPRMDGLAATAEIRR--------VAPGTAVVILTTFGEDSYISQALGGGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     D   +  G+  +   G  +         ++A +             +  ELT
Sbjct: 99  SGFLLKAGDPRELIAGVHAVADGGAYLSPQVAR--QVIARFGGPRAAREAAAVARVEELT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ +IA  L +   TV +Y+++I+ +   + R  A   A    +V
Sbjct: 157 QREREVLALVGAGLSNADIADRLFLVEGTVKSYVSAILNRLEMRNRVQAAILAHEAGLV 215


>gi|29830918|ref|NP_825552.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608031|dbj|BAC72087.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 219

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 32/241 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +  D +  +           R+ A            
Sbjct: 3   ESGKITVFLLDDHEVVRRGVHDLLSGEDDIEVVGEAGTAADALARIPAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +                 L    +          
Sbjct: 52  ----HPDVAVLDVRLPDGSGVEVCREIRSQNDAVKC--------LMLTSYADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WG 181
               + Y       + +   +  +     ++                   +         
Sbjct: 100 MAGASGYVLKDIRGSELLAAVRDVAAGKSLLDPVATAR-------VLERLREGGGPKEDD 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT +E   L  I EG T+ EI   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 153 RLAHLTDQERRILDLIGEGLTNREIGERLHLAEKTIKNYVSSLLSKLGMQRRSQAAAYVA 212

Query: 242 R 242
           R
Sbjct: 213 R 213


>gi|83720601|ref|YP_442380.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
 gi|257138583|ref|ZP_05586845.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
 gi|83654426|gb|ABC38489.1| DNA-binding response regulator NarL [Burkholderia thailandensis
           E264]
          Length = 233

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 65/246 (26%), Gaps = 31/246 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S V  L  R      +                    G       +  
Sbjct: 3   IRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASD---------------GVEGVKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           +     +   V     E  T      
Sbjct: 48  QPDVILLDLNMPGLSGLETLQLLVQD--------VPSAHVVILTVSEDAQELTTALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW--------EIGLLAAYQANMFKSYDVH 179
             +     D   +  G+        +I                       A         
Sbjct: 100 CGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPAPAARPAPAPAATPAAHV 159

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     Y
Sbjct: 160 PVDPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVY 219

Query: 240 AVRNNI 245
           AV   +
Sbjct: 220 AVERGL 225


>gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580]
 gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of
           the des gene [Bacillus licheniformis ATCC 14580]
 gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580]
          Length = 199

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   ++    M  + +   G       +        +D  +      +  
Sbjct: 7   AEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFTKKHRPDICIMDIEMPGKTGLEAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  +              +    F                Y         +   +  +
Sbjct: 67  EELKDTG----------CNIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELASAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   + + ++   A                   LT RE E L  +++GK + EIA
Sbjct: 117 MKGKRIYAPELMEDMYSEAN-----------------PLTDREKEVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI+ I+ K   K R  AI  +     
Sbjct: 160 QELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197


>gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 218

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 6/219 (2%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD--L 86
             D    ++ +D    W   +       G S            ++   +  +    D  L
Sbjct: 2   ADDQPTTVMVVDDHPIWRDAVARDLADEGFSVVATADGVAAARRRAAVVKPAVVVMDMRL 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     +   V      L         + +         Y   +   A +   +  
Sbjct: 62  TDGGGAQATAEVLAVSPASRVLVLSASDERDDVLEAVKAGATGYLVKSASKAELSAAVRA 121

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +        +  L   +                LT RE E L  +++G T+ +I
Sbjct: 122 TADGRAVFTP----GLAGLVLGEYRRIAQRPDTGDSAPTLTERETEVLRHVAKGLTAKQI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 178 AARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|302528552|ref|ZP_07280894.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302437447|gb|EFL09263.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 216

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 66/222 (29%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + +   GA     V         +D  +      
Sbjct: 4   VVVADDEPMVCAHLRTILGSAGDIEVVAQAGDGAEAVEEVVRHRPSVVLMDLRMPGVDGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +            + P  +    F      I         +   +     +   +
Sbjct: 64  AAIERICTLP--------EPPAVVALTTFDADTYVIRALRAGAAGFLVKSTPPEDLIGLV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +      ++       +  L+A      +  D    +   LT RE + L  + EG ++ 
Sbjct: 116 RVAADGHTVLSPSAARRLVALSADGH---RRDDEARRRTAGLTERERDVLACLGEGLSNA 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L ++  TV +Y++ ++ K     R+ A   A    +V
Sbjct: 173 DIAARLHLAEATVKSYVSRMLVKLDCTNRTQAGLLAHEAGLV 214


>gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 25/225 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   +     + ++     A     L          +D  +    
Sbjct: 5   TTVMVVDDNALLRFGLIGAIDLETGLESVGGAPNAEEALTLYAEQKPNIIIMDYRMPGMS 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-ARIR 141
             +    +             +   +   V+ +  E           Y + T      + 
Sbjct: 65  GVECTEQILAES--------PQAKIILYSVYESEEEIWKAVQAGVKGYLTKTAGAVEDVM 116

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G         ++                   +  ELT RE+E L  + EG+
Sbjct: 117 EAIHEVANGGTFFPASIQEKL---------------EARKQQEELTPRELEVLQLLGEGQ 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA ++ IS +TV  ++ +I  K     R+ A+  A +  I+
Sbjct: 162 SNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVVIAFKRGIL 206


>gi|325982823|ref|YP_004295225.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325532342|gb|ADZ27063.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 210

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +       +  + + +D +      +                G     + R  
Sbjct: 2   ISVMIADDHAIVRQGLKQILSETDDIKVTGEAET---------------GFQAIKIARQQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +                 L   + +     I       
Sbjct: 47  DFNVMLLDISLPDRNGIEILKQIKKDR--------PSLAVLMLSMHNEHEFAIRALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A++ + +  +    + +      E+  +           D        L+
Sbjct: 99  SGYLNKQSAPAQLVVAIRQVAAGDKYVSPVVAQELANIIN--------SDTDKPLHATLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L +I+ GKT  EI+  + +S  TV+ Y A ++ K      S  I YA++N +V
Sbjct: 151 DREYQTLCFIAAGKTLSEISSEMFLSPKTVSVYRARLLEKLKLTNNSEIIRYAIKNKLV 209


>gi|238757839|ref|ZP_04619021.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236]
 gi|238703824|gb|EEP96359.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236]
          Length = 211

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 65/237 (27%), Gaps = 32/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  + E   + +  L +       +  +D                G   +   R   
Sbjct: 5   KILLVDDHELIINGIISLLSPYPRFRIIAHIDD---------------GLEVYNACRIHQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      DL+      +    +  +                 I   A    
Sbjct: 50  PDIVVLDLGLPGINGLDLI-----PQLRCRWPQMAILAYTAHM---EEFMAIRTLAAGAM 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +    R +      E   LA    N              LT 
Sbjct: 102 GYVLKNSSRQVLFAALQTVAVNKRYVDPALNREAINLALSVNNESAEI---------LTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  I++G T+  I   L IS  TV  +  +IMRK      +  +  + R  +
Sbjct: 153 RERQILRLIADGYTNRLIGERLCISVKTVETHRLNIMRKLNVHKVTELLNCSRRLGL 209


>gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806]
 gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 210

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 70/230 (30%), Gaps = 21/230 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     L + +          +        G +   L          +D  
Sbjct: 1   MRILIVEDDPLMQLGLEQALGEQPDFEIVGQA-----SDGLAGVQLALSLRPDLVVMDIG 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         + +           L     +         E I   A   + YC     +
Sbjct: 56  LPRLDGIAATKQIKE--------GLANVHVVMLTSHTLQQEVIAALASGADAYCIKGASL 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTW 196
            R+   +         +          +A    +  K   V    +   L+ RE+E L  
Sbjct: 108 DRLLAAIEAAKDGATYLDP-------QIARLVMDNLKPPAVQPNPNLALLSEREMEVLKL 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I EGK++ EIA  L +S NT+  ++  IM K A   R  A   A+R+ IV
Sbjct: 161 IVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGIV 210


>gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 208

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 25/229 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSI 77
            +  V+ L    + L R+   +   S    +  + E  GA S   L R        +D  
Sbjct: 1   MSQKVTVLVVDDNGLIRLGIKEALCS-HPDIDVVGEADGANSAIELYRQTTPDVVTVDYR 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL+  +                 +   ++      I    G    Y S   D+
Sbjct: 60  MPERDGIDLINELLAE--------FPEAKAIMLSIYEGEDIVIRASRGGVKGYLSKDCDI 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   ++ +   G          +                   +D +L+ RE++ L  +
Sbjct: 112 ELLHEAIVEVAAGGTYFPASIARTM---------------SAHTEDQDLSARELQVLHLV 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ ++A  L IS  TV  ++ +IM+K +   R+  +  A+R  IV
Sbjct: 157 AAGSSNKDVADKLSISLPTVKMHMTNIMKKLSVYDRTQLVIAAIRKGIV 205


>gi|284029210|ref|YP_003379141.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808503|gb|ADB30342.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 213

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q  +V+  + +   + V     RS++ A +  +         + A+            
Sbjct: 1   MSQRRVVVVDDHDMFRAGV-----RSEIGASVDIVGEGADVDSAVKAIVAA--------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      ++++ +                 L   V     + I    
Sbjct: 47  ---EPDVVLLDVHLPGGGGTEVMKQVHQRH--------PEVKFLALSVSDAAEDVIGVIR 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +     +        +        +             
Sbjct: 96  AGARGYVTKNISGTELVDAIGRVADGDAVFSP----RLAGFVLDAFSGAIDIASVDEDLD 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I+ G    E+A  L IS  TV  +++S++RK     R     +A    
Sbjct: 152 RLSQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVLRKLQLSNRHELTRWATDRR 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|86142105|ref|ZP_01060629.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
 gi|85831668|gb|EAQ50124.1| two-component response regulator [Leeuwenhoekiella blandensis
           MED217]
          Length = 216

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 15/220 (6%)

Query: 35  RMIPLDCTVSWTMRMY---ALTEYVGASHFLLVRWDLF----QEQKLDSIVSSDWPFDLV 87
           R+  +D  +     +    +  E            DL     +   +D I+       L 
Sbjct: 4   RIAIVDDKIFLAKAVAEKLSFFEDFKLKFIAAHGADLLTKLDENSNIDLILMDIEMPVLN 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A +   + Y  ++    +   VF              + Y         +  G+   
Sbjct: 64  GIEATALVKQKYPQIKI---IMLTVFDNDEHIFNAIKAGADGYLLKETSPDILEKGIRET 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEI 206
              G  +       I +         +S      ++   L+ REVE L  +S+G +  +I
Sbjct: 121 LSGGAAMNPS----IAMRTLKLLRNPESISNLQEREEISLSSREVEVLEQLSKGLSYTKI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S +TV  +I +I +K    ++  A+  A +NNI+
Sbjct: 177 AENLFLSPSTVRKHIENIYKKLQVHSKIEAVEKARQNNII 216


>gi|308186331|ref|YP_003930462.1| 2-component transcriptional regulator [Pantoea vagans C9-1]
 gi|308056841|gb|ADO09013.1| putative 2-component transcriptional regulator [Pantoea vagans
           C9-1]
          Length = 219

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 68/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      LA +  ++C         A               +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDVKGLAVVGEVNCGEDAARWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  QVDVILMDMNMPGIGGLEATRKIVRYNPDI--------KIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVINAIRSVNAGQRYIASDIAQQMALSQI-------EPQKAESPFSCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I+ G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 79/247 (31%), Gaps = 28/247 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  E       +     R      +            +               
Sbjct: 1   METIRVIIIDEQPLFREGIRATLQRMGNCEIIGESTDATEVLDIIRT------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D+ ++S  P ++ R     +         R   +                
Sbjct: 48  --NTADVALIDAGLTSSDPLEIAR-----QTRHLAP---RTAIIMLTPSEDEERLFQSIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM-----FKSYDVH 179
                Y +       +   +  +     +I  D L +  L +    +       K     
Sbjct: 98  VGAAAYYTRNITSEELVDAVRKVSQGEYLINDDVLSKPQLASRVLRSFHELTVEKEEGTP 157

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ REVE L +I+ G ++ EIA  L IS  TV N+I SI++K +   R+ A+ +
Sbjct: 158 KDSYSPLSSREVEILDYIARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVH 217

Query: 240 AVRNNIV 246
           A+R+  +
Sbjct: 218 ALRHGWI 224


>gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
 gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196]
          Length = 207

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 23/226 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +       + L  +I    +              G      +         +D  +    
Sbjct: 1   MDDHFVVREGLKLIIETSDSFQIIGEA-----ANGEEALSFIEKKKPDVILMDLNMPKMS 55

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + +  +   +             +    ++     +         Y     D   +  
Sbjct: 56  GLETIEALNKKQN--------HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFR 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEG 200
            L        ++  + + +I          +K  +VH  K  E  LT +E+  L  I+ G
Sbjct: 108 TLEAAIRGEILLQPNIMEKIV--------KYKRKEVHADKVAENNLTDKELFVLKAIARG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIA  +GI+  TV  ++ +I  K    +RS A+A ++   ++
Sbjct: 160 YKNKEIAFDMGIAERTVKAHLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 209

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E     +S        +  +                    G     LV+  
Sbjct: 2   IKVVLVDDHEMVRMGLSAYLRTQSDIEIVGEASD---------------GHQGVKLVQET 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++           +  +         +    +    +    +         
Sbjct: 47  KPDVVLMDLVMEKMDGVQATEAIMNT--------TEGVKVIVLTSYIDDEKVYPVIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T     I   +        ++      ++           +S      +  ELT
Sbjct: 99  FSYLLKTSSAKEIASAIRAAANGEAVVEAKVTNKM-------MERMRSRKKELHE--ELT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I EGK++  IA  L I   TV  ++++I+ K   + R+    YA R+ +V
Sbjct: 150 PRELEVLRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLEDRTQIAVYAHRHRLV 208


>gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM
           12163]
          Length = 242

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 68/215 (31%), Gaps = 13/215 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            T  +      +    + L         +  + + S++P D +      +  +   VL+ 
Sbjct: 28  ITRIIEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKM 87

Query: 105 PTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RI 153
                                       G+ +          R      +          
Sbjct: 88  CGSPGKIWLWDDEAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSMSTANSLKTIE 147

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           +      +I  ++          +         +L+ RE+E L W +EGKTS EI++IL 
Sbjct: 148 LTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILS 207

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS NTVN +   + ++     ++   +YA    ++
Sbjct: 208 ISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 242


>gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 216

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 64/217 (29%), Gaps = 16/217 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           R++ +D    W   +       G                    + D ++      D    
Sbjct: 7   RVMVVDDHPMWRDGVARDLADEGFDVVATADGVRAATSRAAAVRPDVVLMDMQMPDGTGA 66

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A +E  K                    + +         Y   +   + +   +     
Sbjct: 67  TATAELLKVCPEAHVL---VLSASDERDDVLDAIKAGATGYLVKSAQRSELVAAVHATAD 123

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
              +           LA      ++      G +   LT RE + L  +++G +S +IA 
Sbjct: 124 GQAVFTPG-------LAGLVLGEYRRIARSPGPETPVLTERETQVLREVAKGLSSRQIAN 176

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L IS  TV N++ + +RK     R     YA+ + +
Sbjct: 177 RLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213


>gi|242238892|ref|YP_002987073.1| response regulator [Dickeya dadantii Ech703]
 gi|242130949|gb|ACS85251.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech703]
          Length = 218

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      L  +    C                         +
Sbjct: 2   ISVFLVDDHELVRAGIRRILDDIKGLKVVGEAQCGEDAVKWCRT---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       +   ++    +   ++   P          
Sbjct: 47  SVDVVLMDMSMPGIGGLEATRKIVR-----FSPEVK---VIMLTIYTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +       E L
Sbjct: 99  AGYLSKGATPEEVICAIRSVHAGKRYIASDIAQQMAL---------SQLEPQTETPLECL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMMMITKGQKVTEISDQLNLSPKTVNSYRYRMFNKLNINGDVELTHLAIRHGL 208


>gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
 gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia
           ruckeri ATCC 29473]
          Length = 209

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L       + +   +                G     L    L
Sbjct: 6   TIMIVDDHPLMRRGIRQLLELEATFSVVAEANN---------------GKEAVTLANHTL 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +                 +   V     +         +
Sbjct: 51  PDVILLDLNMKGMTGLDTLKALRHEGI--------AAKIIVLTVSDARSDVYAMIDAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L L      +  R+             +   S         ELT 
Sbjct: 103 GYLLKDSEPEVLLEHLCLAAQGESVFSREVT-----------DYLASRHEQINPFAELTE 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 152 RELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATILYLEN 206


>gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
 gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96]
          Length = 240

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 68/215 (31%), Gaps = 13/215 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            T  +      +    + L         +  + + S++P D +      +  +   VL+ 
Sbjct: 26  ITRIIEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKM 85

Query: 105 PTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RI 153
                                       G+ +          R      +          
Sbjct: 86  CGSPGKIWLWDDEAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSMSTANSLKTIE 145

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           +      +I  ++          +         +L+ RE+E L W +EGKTS EI++IL 
Sbjct: 146 LTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILS 205

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS NTVN +   + ++     ++   +YA    ++
Sbjct: 206 ISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|56413138|ref|YP_150213.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362064|ref|YP_002141701.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127395|gb|AAV76901.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093541|emb|CAR59003.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 218

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +                    G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEA---------------CCGEDAVKWCRTN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +A S  D           +   V    P          
Sbjct: 47  AVDVVLMDMNMPGIGGLEAMRKIARSTADI--------KVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPAKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|331699960|ref|YP_004336199.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954649|gb|AEA28346.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 223

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVR 65
            + IVL  + E   + +  +                  +  R+  + E +GA      V 
Sbjct: 9   PLRIVLVDDHEMVIAGLKAMLAP---------------FRGRVRVVGEAIGADQAVSTVA 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      DL R +            +        V+            
Sbjct: 54  SLTPDIVLCDVRMQGASGLDLCRTLRE-----RDPEAKVVL---LSVYDDEQYLFQALRA 105

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y         +   L L      +I           AA   +         G    
Sbjct: 106 GASGYLLKKISGEELVRQLELAHTGTTVIDASLAGRAVDTAARLQSDEFWPGARQG---- 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ +  G ++  IA  L +S  TV +++ SI RK     R+ A+A A+R  I
Sbjct: 162 LTHRESEVLSLMVTGLSNRGIATRLVVSDETVKSHLRSIYRKLGVGDRTAAVATALREGI 221


>gi|171913285|ref|ZP_02928755.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 207

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 63/222 (28%), Gaps = 24/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     + +        +D  +      
Sbjct: 7   VLIVDDHFVVRSGLAAALEVEGDVKVVGEAKRGEDALEVYQLRQPGVVLMDLQLPGITGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +       +    +         F    E           Y   T     +   L
Sbjct: 67  QATAILRA-----HDPQARILVYST---FAHDDEVQMALDAGAAGYLQKTASRDELLTAL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +  +    +  L                    ++ RE E L  I++G  + 
Sbjct: 119 RRVAAGGSYLPPELEQRLADLRLCVG---------------ISMREREILELIAKGHANK 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA +  IS +TV  +++ I+ K     R+ A A A+R  IV
Sbjct: 164 QIAALFAISEDTVKRHVSHILEKLGVHDRAQATAEAIRRGIV 205


>gi|26248576|ref|NP_754616.1| transcriptional regulator NarP [Escherichia coli CFT073]
 gi|91211483|ref|YP_541469.1| transcriptional regulator NarP [Escherichia coli UTI89]
 gi|117624388|ref|YP_853301.1| transcriptional regulator NarP [Escherichia coli APEC O1]
 gi|227887250|ref|ZP_04005055.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|237704666|ref|ZP_04535147.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|300981378|ref|ZP_07175493.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300982960|ref|ZP_07176392.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|301048933|ref|ZP_07195926.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|331647847|ref|ZP_08348939.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
 gi|26108981|gb|AAN81184.1|AE016763_143 Nitrate/nitrite response regulator protein narP [Escherichia coli
           CFT073]
 gi|91073057|gb|ABE07938.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           UTI89]
 gi|115513512|gb|ABJ01587.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           APEC O1]
 gi|222033954|emb|CAP76695.1| Nitrate/nitrite response regulator protein narP [Escherichia coli
           LF82]
 gi|226901032|gb|EEH87291.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA]
 gi|227835600|gb|EEJ46066.1| transcriptional regulator NarP [Escherichia coli 83972]
 gi|300299309|gb|EFJ55694.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 185-1]
 gi|300307590|gb|EFJ62110.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 200-1]
 gi|300408653|gb|EFJ92191.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 45-1]
 gi|315285806|gb|EFU45246.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 110-3]
 gi|315298006|gb|EFU57275.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 16-3]
 gi|324013986|gb|EGB83205.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 60-1]
 gi|331043571|gb|EGI15709.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           M605]
          Length = 225

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDSGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 210

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 24/223 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  + E   G       R  L     +D  + +   
Sbjct: 8   RILIADDHPVVRQGLAAMIDRQAAMRVVAEAADGREAVTRYREHLPDVALMDLRMPAMDG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +                 +    + T  +           +         +   
Sbjct: 68  VEAIVAIRSE--------FPDSRIIVLTTYDTDEDIYRGLRAGAMAFLLKEAPTEELVEA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + I +    ++                +   + ELT RE+E L  + +G+T+
Sbjct: 120 IRAVHAGHKRIPQQVAAKLA---------------NRLSNPELTARELEVLHLVVKGQTN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I   TV  ++ +I+ K     R+ A   A+R  +V
Sbjct: 165 KEIAASLFIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRGLV 207


>gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 228

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 76/229 (33%), Gaps = 11/229 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             V+ L     +      L   +S T     + E   G     LV         +D+ + 
Sbjct: 1   MSVTTLIIVHTVSLFRDGLRLALSSTPGFSVVGEASNGQQAIQLVDQVDPDLVLMDTDLP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                ++ R +  S              LF PV       +               + A 
Sbjct: 61  GVNGLEVARVIKRSHPH-------IAIVLFGPVQSGAF-VVKAIRAGVAACVPPNIEFAD 112

Query: 140 IRIGLMLLFPKGRIILRDRLW--EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           +   L  +      I    L   E+              D        L+ RE+E L  +
Sbjct: 113 LLGTLRQVRRGEYPINDLVLASPEVAATVLEAFRQMVGDDDIQTIFSPLSARELEVLELV 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T+ EIA  L IS  TV N+I+SI+RK A   R+ A+ YA+R   +
Sbjct: 173 AAGHTNREIAARLDISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221


>gi|254393534|ref|ZP_05008669.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811039|ref|ZP_06769682.1| LuxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439619|ref|ZP_08214353.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707156|gb|EDY52968.1| luxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294323638|gb|EFG05281.1| LuxR family two-component response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 65/241 (26%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + + L  + E     V  L      +  +                    G    +  
Sbjct: 10  QRPIRVFLLDDHEVVRRGVRDLLDSEPDIDVVGEAGS---------------GEQALVRG 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +       + R +                 L    F      +    
Sbjct: 55  PALRPDVAVLDIRLPDGDGITVCRELRSRMPGLAC--------LMLTSFDDDDALLDAIM 106

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y       + +   +  +     ++       +           ++ D    +  
Sbjct: 107 AGASGYVLKQIKGSDLVAAVRTVASGQSMLDPATTARL----MNSLRAPRTPDPEADRLG 162

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A +  
Sbjct: 163 GLTEREREILELIGEGLTNRQIGARLYLAEKTVKNHISRLLAKLGVERRIQAAVLATQFR 222

Query: 245 I 245
           +
Sbjct: 223 L 223


>gi|159027236|emb|CAO89331.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 234

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 80/255 (31%), Gaps = 38/255 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +       + +  +      +     +                  
Sbjct: 1   MRVIVIEDHDLTRMGLVAALQHREGIQLVGEAISGLQGLKLLEET--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L+     +  +           L   +++T  + +   +   
Sbjct: 46  KPDVAIIDIALPMIDGIELMGRFQQNCGEDS----LATKILMLTMYNTQEQVLAAFSAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----- 182
           + YC     + ++   +         I       +G++       F +     GK     
Sbjct: 102 DSYCMKDISIDKLIEVIYSTHEGNPWIDPVI---VGVIRQQVHQNFATSSRTDGKTVIIQ 158

Query: 183 -----------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                      +  LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K +  
Sbjct: 159 GVDPEHRQLLENVPLTERELEILALIVGGFSNAQIADRLYITIGTVKTHVRNILNKLSVD 218

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A+R+ +V
Sbjct: 219 DRTQAAVLALRSGLV 233


>gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 242

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
           +R++ +D        +    E  G   F+ V  +      +     ++ SD         
Sbjct: 15  SRILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           AL EK +    L     +F        +         + Y S  FD   +   +  +  +
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 151 GRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISE 199
              +L++       ++  +A     +          + E        T RE   L  ++E
Sbjct: 135 QERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKIDIPSFTPREASVLQLVAE 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++V
Sbjct: 195 GLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 232

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 76/226 (33%), Gaps = 14/226 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
           A ++ +D   S    + A  EY G     +        Q L      ++ SD     V  
Sbjct: 5   ATILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEKTIPDVIISDIMMPEVDG 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-- 147
               EK +  +  +    +F        + I       + Y    FD   +   +  L  
Sbjct: 65  YEFLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLLE 124

Query: 148 -------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISE 199
                       + L +   EI  L         +          +LT RE   L  ++E
Sbjct: 125 RRKTNEKTATDSVKLEEIAQEIRELKQQLGQQQNTLITTPPPIKIDLTPREQSVLDLVAE 184

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 185 GLMNKEIAARLETSVRNVEKYVSRLFSKTGTNSRTELVRFALKHGL 230


>gi|118476625|ref|YP_893776.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415850|gb|ABK84269.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 219

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 66/227 (29%), Gaps = 19/227 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + L  +I    +              G      +         +D  + 
Sbjct: 10  VLIVDDHFVVREGLKLIIETSDSFQIIGEAEN-----GEEALSFIEKKKPDVILMDLNMP 64

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + +  +   +             +    ++     +         Y     D   
Sbjct: 65  KMSGLETIEALNKKQN--------HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDREN 116

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L        ++  + + +I           K       ++  LT +E+  L  I+ 
Sbjct: 117 LFRTLEAAIRGEILLQPNIMEKI------VNYKRKEVYADKVEENNLTEKELFVLKAIAR 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 171 GNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 217


>gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 208

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 16/218 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +        +     G   F   +        +D  +      
Sbjct: 3   VLIVDDDALIRDSLKILIDLEADFTVVGTASNGQEAFEFCKEYAPDLILMDIRMPIMDGV 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +  S              +    F                Y   +     I   L
Sbjct: 63  LATKMIKES--------FGSIRIIILTTFKDDQYIKEALKNGAQGYILKSQSADSIIESL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +   +       +A+   +M K        D +LT RE E + W+ EG ++ 
Sbjct: 115 RTVSKGNVVFETE-------IASVLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSNR 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           EI+  L +S  TV NY+  ++ K   + R+    + ++
Sbjct: 168 EISAALYLSEGTVRNYVTQLLEKLNVRDRTQLAIFYLK 205


>gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
 gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia
           cenocepacia J2315]
          Length = 262

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVSSDWP 83
             + L    +      S       ++  +G   F + R          +     + + +P
Sbjct: 26  RWAPLATAFLNTVDLSSLLKLFGDVSASLGFPRFAISRVSRRHTGNGRAMAVETLCARYP 85

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN----------ITPPAGMDNRYCSL 133
              V   A  +      V +       P                      AG+ +     
Sbjct: 86  DHWVAHYAQRDYGPVDPVHRMAFARATPYRWADIRGLNRIEQRVLGEARDAGLTSGVSIP 145

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREV 191
             +     + + L  P   I     +     + A               +   EL+ R+ 
Sbjct: 146 LRETNGDILLVNLASPSPEIKTEVHMRLASSIGALFHQELHRLMKPHRPEPALELSPRQQ 205

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ECL W++ GK+S  IA I+GIS +TV+ +IA  M+     +R+ A  +AV   ++
Sbjct: 206 ECLAWVARGKSSWAIASIVGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 260


>gi|158338175|ref|YP_001519352.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158308416|gb|ABW30033.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 224

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 60/234 (25%), Gaps = 19/234 (8%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  ++  R   V         L  +      +       +     G +     +     
Sbjct: 1   MMTPQNPIRVLLVDDEDIVRYGLKAIAQGTPEIEIVGEAGS-----GKAAIAQAKTLQPD 55

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +         + +          +      L           +         Y
Sbjct: 56  VILMDINMPQMDGVTATQEI--------SRIQPHAKVLILTTHDEAEYLVEAMQQGAVGY 107

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                        +         +      ++  L                    +T RE
Sbjct: 108 LLKNTPPEDFIQSIQQAHKGYLQLGPGLGQKLCQLLKT------PVRPQIEAFEGITPRE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            + L  ++ G ++ EI+  L I+  TV N+++SI+ +   ++R+    +A    
Sbjct: 162 QDVLKLVATGASNREISETLHITEKTVKNHVSSILSRVGVQSRTQLAIWANSAG 215


>gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 6/215 (2%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD----LFQEQKLDSIVSSDWPFDLVRCMA 91
           +            +    E +G                  Q    +V  D     +  +A
Sbjct: 2   VAEASPDGRGLAGLRRRAEELGGEVVGEAADGEEALALAAQLRPDVVVMDVRMPKLDGIA 61

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            +              L    F+             + +       AR+  G+  +    
Sbjct: 62  ATRALAGPEAAAPVKVLVVTTFNVDHHVYEALRAGASGFLLKDSPPARLLEGVRTVARGE 121

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++      E+  +  Y   +    +   G    L+ RE+E L  +++G+++ EIAV L 
Sbjct: 122 ALLDPSVTREL--IGRYATRVRPREEPVHGALAGLSPRELEVLRLVADGRSNSEIAVELV 179

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  TV  Y++ ++ K   + R  A+  A R  +V
Sbjct: 180 LSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTGLV 214


>gi|261418524|ref|YP_003252206.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765338|ref|YP_004130839.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374981|gb|ACX77724.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110204|gb|ADU92696.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 221

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 74/235 (31%), Gaps = 29/235 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  ++      +  + +  D       +                 G       
Sbjct: 9   VPRIKVLIADDNPFVREGLRIILSTYDEFDVAATVGD---------------GKEAVEYC 53

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  + +    +  + +             +   L    F      +    
Sbjct: 54  RHHEVDVALLDVRMPNMNGVEATKLLCEQT---------KTKPLILTTFDDDEYILDAIQ 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D  RIR  +  ++    ++    + +I      +A      D       
Sbjct: 105 YGAKGYFLKNTDPERIREAIKAVYHGQVVMQEIVMDKIKSNLKEEAEAAPKIDKSL---- 160

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             T RE++ +  I++G ++ EIA  L +S  TV NYI SI+ KT  + R+    Y
Sbjct: 161 -FTERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|290475675|ref|YP_003468564.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004]
 gi|289174997|emb|CBJ81800.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Xenorhabdus bovienii SS-2004]
          Length = 219

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E     V  +      +                 +               +
Sbjct: 2   INVLLVDDHELVRIGVKGILEDVKGIKVAGEAGSGEEAVRWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   +               
Sbjct: 47  STDVVIMDIGMPGIGGLEAAKKIIRYSPD--------TRVIMLTIHTESSLPAKVMQAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L         +          EL+
Sbjct: 99  RGYLSKAATPQDMINAIRTVYAGQRYISPDIAQQMAL--------DQLSPPKENPLAELS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +T I++G+  +EI+ +L +S  TVN+Y   +  K   K        A+R  ++
Sbjct: 151 ERELQIMTMITQGRKVNEISTLLNLSPKTVNSYRYRMFSKLNIKGDVELTHMAIRCGLL 209


>gi|119944945|ref|YP_942625.1| transcriptional regulator of LuxR family protein [Psychromonas
           ingrahamii 37]
 gi|119863549|gb|ABM03026.1| transcriptional regulator of LuxR family protein [Psychromonas
           ingrahamii 37]
          Length = 214

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  + E   + +  +      +  +                              +
Sbjct: 2   INILLVDDHELVRTGICRIIDDVRGMKVIGEAQSGEEAVKWCRK---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D +  +            +    +   +    P          
Sbjct: 47  HPDVVLMDINMPGMGGLDAMHKILRIN--------EDLKIIMLTMHTENPFPSKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S +     +   + L+    R +  +   +I L         +           L+
Sbjct: 99  SGYISKSAGPDEVLNAIRLVHSGQRYLAPEIAQKIAL--------SQLSPTADDPFSVLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  LG+S  T+N+Y   +  K   K   G    A+R  ++
Sbjct: 151 ERELQIMMMITKGQRVVDISEQLGLSPKTINSYRYRLFDKLDVKGDVGLTHLAIRYGML 209


>gi|239918649|ref|YP_002958207.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415136|ref|ZP_06246878.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839856|gb|ACS31653.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 222

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++H  + ++ L  +      V        L               
Sbjct: 2   IRVLVADDQQLMRTALAHFVSTAEDLEVVGTAADGVEAVEMAKDL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++       +    A +        ++         F +    +       
Sbjct: 47  -----RPDVVLMDMQMPRMDGIEATTAIMAEAPEVRVLAITT---FSSEAYLVPALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
           + Y         +   +  +     +       E+      Q+   +S   H   +  EL
Sbjct: 99  SGYLVKDAPPEEVVEAVRQVHRGDAVFSPRVARELIETVTQQSERRESAAAHALTELEEL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E +T +++G ++ EIA  L ++  TV +++  IM K   + R   +  A R  +V
Sbjct: 159 TPRELEVVTELAKGSSNAEIAQALFLAEATVKSHLGKIMDKWQARDRVQVLIRASRAGLV 218


>gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica]
          Length = 249

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 63/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +      +G+  +         +   D ++ S +P + V     +       V+  
Sbjct: 15  LRDHIDRKLSSLGSPEYAYTVVRK--KNPSDVLIISSYPDEWVDLYRANNFQLTDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
             +   P        +                   N +  +  D       L ++     
Sbjct: 73  AFKRTSPFAWDENITLMSDLKFTKIFSLSKQYNTINGFTFVLHDHMNNLALLSVIIASNG 132

Query: 153 I-----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWI 197
                  L      + +L                   +           T RE E L W 
Sbjct: 133 QEELEKRLSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWA 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA I GIS +TV  ++ +I+ K        AI   V   ++
Sbjct: 193 SMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|229491998|ref|ZP_04385815.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229321130|gb|EEN86934.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 71/238 (29%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ +  + D +  +                    GAS   + R  
Sbjct: 16  ITVALVDDHAAIRSGLAMILRQHDDIDVVAEAGD---------------GASAITVTRTH 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +          R   L    F              
Sbjct: 61  QPDVVLMDVRMPGTDGIEATRQIIGTT---------RSRVLVLTTFDLDEYVFAALRAGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   T     +   +  +     ++         L+  +     K  +       ELT
Sbjct: 112 SGFLLKTATADELTSAIRNVAAGDAVLAPRAAR--VLIGEFVQRAPKPTEPL--GLSELT 167

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  +  G ++ E++  LG+   TV ++++ ++ K    +R  A   A    +
Sbjct: 168 DREREVLALLGTGMSNAELSRELGVGAPTVKSHVSRVLSKLHLTSRVQAAILARELEL 225


>gi|304397145|ref|ZP_07379024.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304355294|gb|EFM19662.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 219

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      LA +   +C         A               +
Sbjct: 2   ISVLLVDDHELVRTGIRRILEDVKGLAVVGEANCGEDAAKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  QVDVILMDMNMPGIGGLEATRKIVRYNPDI--------KIIMLTIHTESPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRSVNAGQRYIASDIAQQMALSQI-------EPQKTESPFSCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I+ G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|302524582|ref|ZP_07276924.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302433477|gb|EFL05293.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 215

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V+ +      +  +                    G     L R +
Sbjct: 2   IRVLLADDEAMIRAGVAAILASDKDIEVVAEAAD---------------GREAVELARAN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +           +     L    F              
Sbjct: 47  RPDVALLDIRMPGLDGLAAAEEIRKL--------VPDTGVLMLTTFGEDEYIERALGLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     D   +  G+  +      +       +  +     N F        +   LT
Sbjct: 99  SGFLLKAGDPRELLAGVHAVADGAAFLSPKVAHRV--ITRLSGNRFSRAATARERVSVLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++EG ++ +IA  + +   TV  ++++I+ +   + R  A   A    +V
Sbjct: 157 NREREVLVLLAEGLSNADIAARMFVVEGTVKAHVSTILTRLDVRNRVQAAITAFEAGLV 215


>gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 192

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 13/192 (6%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--------EN 119
                +    + + +P   V             VL+        +              +
Sbjct: 1   PVPFTRPKISLRTTYPQAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWD 60

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMF--K 174
                G+            R    L       R       +    + LLA    +     
Sbjct: 61  AAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRL 120

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D+    +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K     ++
Sbjct: 121 EDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKT 180

Query: 235 GAIAYAVRNNIV 246
               YA    ++
Sbjct: 181 QIACYAAATGLI 192


>gi|15597782|ref|NP_251276.1| response regulator GacA [Pseudomonas aeruginosa PAO1]
 gi|116050573|ref|YP_790608.1| response regulator GacA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152986307|ref|YP_001347976.1| response regulator GacA [Pseudomonas aeruginosa PA7]
 gi|218891334|ref|YP_002440201.1| response regulator GacA [Pseudomonas aeruginosa LESB58]
 gi|254235572|ref|ZP_04928895.1| response regulator GacA [Pseudomonas aeruginosa C3719]
 gi|254241019|ref|ZP_04934341.1| response regulator GacA [Pseudomonas aeruginosa 2192]
 gi|296388946|ref|ZP_06878421.1| response regulator GacA [Pseudomonas aeruginosa PAb1]
 gi|313107619|ref|ZP_07793804.1| response regulator GacA [Pseudomonas aeruginosa 39016]
 gi|2851490|sp|Q51373|GACA_PSEAE RecName: Full=Response regulator gacA; AltName: Full=Global
           activator
 gi|9948649|gb|AAG05974.1|AE004687_3 response regulator GacA [Pseudomonas aeruginosa PAO1]
 gi|2105387|gb|AAC45328.1| response regulator GacA [Pseudomonas aeruginosa PAO1]
 gi|115585794|gb|ABJ11809.1| response regulator GacA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167503|gb|EAZ53014.1| response regulator GacA [Pseudomonas aeruginosa C3719]
 gi|126194397|gb|EAZ58460.1| response regulator GacA [Pseudomonas aeruginosa 2192]
 gi|150961465|gb|ABR83490.1| response regulator GacA [Pseudomonas aeruginosa PA7]
 gi|218771560|emb|CAW27328.1| response regulator GacA [Pseudomonas aeruginosa LESB58]
 gi|310880306|gb|EFQ38900.1| response regulator GacA [Pseudomonas aeruginosa 39016]
          Length = 214

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    + L  +   D                G     L R  
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIEGLQVVGQAD---------------CGEDCLKLAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S+ D    V+              P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVVVTVC--------EEDPFPTRLMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   +  +F   R I      ++ L +         +D        L+
Sbjct: 99  AGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDS-------LS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+       I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMV 210


>gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 208

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +  + +    +  +   +                       +  +
Sbjct: 1   MRVLIVEDDPMMQLGLEQVLSDCPGITLVGIAEDG--------------------YLGVE 40

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +E+K D ++       L    A  +  +    ++              E +   +   
Sbjct: 41  AAKEKKPDVVIMDIGLPRLDGIAATKQIKEILPEIRVVMLTSHTA---ETEVLASLSSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC     V  + + +   +     +                   K           L+
Sbjct: 98  DAYCVKGGSVDSLIVAIQAAYEGATYLDPQVAR-------LVMEHLKPPLPQSN-LGTLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  + EGK++ EIA  L +S NT+  ++  IM K A   R      A+R+ +V
Sbjct: 150 PRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208


>gi|223936673|ref|ZP_03628583.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894524|gb|EEF60975.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 198

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 62/183 (33%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V  + +    LD  +      +++R +  S        L        P        +   
Sbjct: 31  VWKETWDVVILDITMPGRSGLEVLREIKKS-----SPRLPVLVLSMHP---ENQFAVRVL 82

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y +       +   +  +   GR +      ++          + S D      
Sbjct: 83  KRGASGYMTKESAPEELVGAMKKVLAGGRYVSTGLAEKLA--------SYLSADTQKPPQ 134

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE + L  I+ GK   EIA  L +S  T++ Y   I+ K   K  +  + YA+++
Sbjct: 135 ELLSDREFQVLRLIASGKIVSEIAKELSLSVKTISTYRTRILEKMGMKNNAELMHYAIQH 194

Query: 244 NIV 246
            +V
Sbjct: 195 QLV 197


>gi|301017700|ref|ZP_07182371.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300400050|gb|EFJ83588.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 216

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 64/230 (27%), Gaps = 38/230 (16%)

Query: 14  REDEQR--TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           R+D      + +          A+++ L+  +             G+ H  L        
Sbjct: 16  RQDPIMITVALIDDHLIVRSGFAQLLGLESDLQVVAE-------FGSGHEALAGLPGRGV 68

Query: 72  Q--KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           Q    D  +      +L+  +            +    +   V  +              
Sbjct: 69  QVCICDISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARG 117

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S       +   +  +   G  +  D   ++                  G+   LT R
Sbjct: 118 FLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E +    +++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 162 ERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 211


>gi|300022341|ref|YP_003754952.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524162|gb|ADJ22631.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 215

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 71/241 (29%), Gaps = 32/241 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ ++L  +          L    D +  +       S       LT           
Sbjct: 1   MEKIRVLLVDDHAVVRQGYRRLIESQDGIDVVGEAGDAASAYQSYKNLT----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      DLVR     +   Y    +                     
Sbjct: 50  ----PDVTVVDISMPGRGGIDLVR-----QLRLYDAAARILMFTM---HANASYAEQAFK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + +     +   +  +F     +  +    I   A+   N   + +       
Sbjct: 98  AGAQGYVTKSSPPDVLISAIRTVFSGRPALCAEINSAIA--ASRLFNEDTALE------- 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I + KT+DEIA    +S  TV NY  +I  K   +T    + Y +R  
Sbjct: 149 TLSPREFEILRMILDEKTTDEIAQAFNLSPKTVANYHYAIKSKLGVRTDIELVYYCLRQG 208

Query: 245 I 245
           +
Sbjct: 209 L 209


>gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22]
 gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei
           87.22]
          Length = 236

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 69/227 (30%), Gaps = 11/227 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D       +  T+     +  + E   G     L          +D  +   
Sbjct: 10  VVRVLLADDDALLRTGVAVTLGTAPDIEVVGEAADGLRAVELCHALAPDVVLMDVRMPGI 69

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +    +A +              L    F              + +        R+ 
Sbjct: 70  DGIEATARIAAAG--------PAARVLVLTTFPDDTYVWRALRAGASGFLLKRTAPERLI 121

Query: 142 IGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             +  +     +I       +    +   +     +          LT RE + L  I+E
Sbjct: 122 DAVRTVAAGDTLIDPSVTRALVEHFVLGERTARGPADAADLAGLRGLTAREAQVLRLIAE 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ E+A +LGI+ +T   ++  ++ K   + R+ A+  A R+ ++
Sbjct: 182 GLSNAELAELLGIAESTAKTHVKRVLHKIGARDRAQAVVLAYRSGLM 228


>gi|223935182|ref|ZP_03627100.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896066|gb|EEF62509.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 267

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 59/244 (24%), Gaps = 27/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             +  + ++L  +       +  L +    +  +               LT         
Sbjct: 26  KSMPNIRVLLADDHTVVRQGLRALLSGEKDIQIVGEAGTGREAVQMAQKLT--------- 76

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      +  R +A         V      L    +         
Sbjct: 77  ------PDVILMDIAMPLMNGLEATRKIAE--------VAPSAKVLVLSSYGEDDYVQKL 122

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y         +   +                 +                    
Sbjct: 123 TEAGASGYLIKHAAANDLVAAVRETHKGNAFFSPGIAKRLRDQVRAGFAN----GNGTKA 178

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            FELT RE+E L  I  GK +  IA  +GIS  TV  +   +M K      +    YA+ 
Sbjct: 179 SFELTERELETLGHIVAGKPNKVIACDMGISIKTVEKHRQQVMNKLNIHEVASLTRYAIA 238

Query: 243 NNIV 246
             ++
Sbjct: 239 KGMI 242


>gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 211

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 35/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V +VL  +     + V  L +  D L  +     +      +                
Sbjct: 4   QHVRVVLVDDHPVVRAGVRALVSAQDDLDVVGEAADSAQAVAVVAE-------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                  K D ++      D       +   +      +        + T  + +     
Sbjct: 50  ------TKPDVVLMDLSLGDGPGGAETTRLVRDLPSPPQVLV--LTTYDTEADVLEAVDA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +        ++       +   A                  +
Sbjct: 102 GAAGYLLKDAPPDELFRAIRGTARGETVLAPSVATRLLQRA-------------ASPAPK 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ REVE L  +++G  + E+A  L +S  TV ++++ I  K    TR+GA+A A+   I
Sbjct: 149 VSPREVEILRLLAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERRI 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|323357435|ref|YP_004223831.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273806|dbj|BAJ73951.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 216

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 13/228 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            S    +    D       +   +     +  + E   G     +VR        +D  +
Sbjct: 1   MSTPVRIVLVDDQALFRAGIRMVIDSQPDLEVVGEASDGREGIEMVRATRPDLVLMDVRM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                      +            + P  +    F              + +     +  
Sbjct: 61  PVMDGLTATAEILREP--------EAPRVVVLTTFDLDEAAARAIQRGASGFLLKDSEPE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     +I  +   E+    A+ A      +       ELT RE E     +
Sbjct: 113 FLLSAIRTVHAGSAVIAAEATREL---FAHIAENGS-AEPVPASFGELTEREREIFLLAA 168

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ EIA    +S  TV  +I+ I+ K + + R   + +A R+ +V
Sbjct: 169 AGLSNSEIAAREFLSEATVKTHISRILAKLSLRDRVQLVVFAYRHGLV 216


>gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 200

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +                 +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKENS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLSASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 257

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 18/230 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH-FLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +S    +  + E   A    +L+          D  + +    
Sbjct: 7   VLMVDDHPLFRQGVRWALSSERDIKIIGEGSSAEEGLVLISEHEPDVVLTDLNLPNMDGL 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +     +           +   V+ +              Y S       +   L
Sbjct: 67  EFTRTIRRQYPNIG--------VVMLSVYESDEHAFNALRAGAAAYYSKEISPKTLATVL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--------TGREVECLTW 196
             +     +I  D ++E   +A      F+        + +L        + RE+E L  
Sbjct: 119 RRVARGEYVIN-DVMFEDPRVADRILTQFRGLQTGIVAEPDLDISLFSPLSDREIEVLEH 177

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G T+ +IA  L IS  TV N+I+SI+RK +   R+ A+ YA+R   +
Sbjct: 178 IASGATNKDIADALKISTQTVKNHISSILRKLSLNDRTQAVLYALRRGWI 227


>gi|204929147|ref|ZP_03220290.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321691|gb|EDZ06890.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 215

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 3   EVTPFQVLIVDDHPLMRRGIRQLLELDPAFYVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRIEPDLILLDLNMKGLSGLDTLNALRRDSVT--------AQIIILTVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++              Y     + +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVN-------EYLRERER-FGAQEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|322432955|ref|YP_004210204.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9]
 gi|321165182|gb|ADW70886.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 210

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 75/236 (31%), Gaps = 30/236 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQ 70
           +N     R   V   P   + ++ ++           M  + E   G    L  R  L  
Sbjct: 1   MNSSQSIRVLTVDDHPLLREGISGVVNAQP------GMTVVAEASDGDEAILSFRTHLPD 54

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      + +  +                 +    +    + +       + Y
Sbjct: 55  ITLMDLRLPKTSGIEAIVTIRKE--------FPAARIIVLTTYAGDVQALRAFKSGASGY 106

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              +   A +   +  +    R I  +   E+   A                D  L+ RE
Sbjct: 107 LLKSMLRAELIDTIRRVHAGQRRIPPEIAAEMAEHAG---------------DDILSARE 151

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  ++ G ++  IA  L +S +TV  +I +I+ K     R+ A+  A+R   +
Sbjct: 152 IEVLRHVAAGNSNKIIASNLTLSEHTVKGHIKNILSKLGASDRTHAVMIALRRGFL 207


>gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
          Length = 242

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
           +R++ +D        +    E  G   F+ V  +      +     ++ SD         
Sbjct: 15  SRILLVDDEPGLRAAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           AL EK +    L     +F        +         + Y S  FD   +   +  +  +
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 151 GRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISE 199
              +L++       ++  +A     +          + E        T RE   L  ++E
Sbjct: 135 QERLLKEAARFADIDVSKMAKQITEIKSMLTDQNPTNSENKIDIPSFTPREASVLQLVAE 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++V
Sbjct: 195 GLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|157145294|ref|YP_001452613.1| response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157082499|gb|ABV12177.1| hypothetical protein CKO_01031 [Citrobacter koseri ATCC BAA-895]
          Length = 217

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +    C         A               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   +    P          
Sbjct: 47  AVDVVLMDMNMPGIGGLEATRKIARSSADI--------KVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +F   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVFSGQRYIASDIAQQMALSQI-------EPEKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I+ G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITRGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|56418740|ref|YP_146058.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56378582|dbj|BAD74490.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 221

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 31/236 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  ++      +  + +  D       +                 G       
Sbjct: 9   VPRIKVLIADDNPFVREGLRIILSTYDEFDVAATVGD---------------GKEAVEYC 53

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  + +    +  + +             +   L    F      +    
Sbjct: 54  RHHEVDVALLDVRMPNMNGVEATKLLCEQT---------KTKPLILTTFDDDEYILDAIQ 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D  RIR  +  ++    ++    + +I       +N+ +  +     D 
Sbjct: 105 YGAKGYFLKNTDPERIREAIKAVYHGQVVMQEIVMDKIK------SNLKEETEAAPKIDK 158

Query: 185 EL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L T RE++ +  I++G ++ EIA  L +S  TV NYI SI+ KT  + R+    Y
Sbjct: 159 SLFTERELDIMALIAKGLSNKEIAKQLFLSEGTVANYITSILDKTGLQHRTQIAVY 214


>gi|327450891|gb|EGE97545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|328754312|gb|EGF67928.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
          Length = 237

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 19/227 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++ ++  ++            GA    +V+        +D  
Sbjct: 1   MRVVLVDDQKLVRQGFRLILAVEPDITVVGEATN-----GAEGVDVVKETAPDVVLMDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 +    F              + +     D 
Sbjct: 56  MPVMDGVAATAKIREFS---------DVKVVILTTFDRDDYLFDALDAGASGFMLKNADA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  GL  +     ++  +    +   + +Q        V   K  +LT RE+E    +
Sbjct: 107 ESLVAGLRQVADGHALLAPEVTRRVIARSVHQG-----GTVTGSKAEQLTAREIEVAKLV 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + G ++ EIA  L +S  TV  ++++ + K   + R   +A  +R  
Sbjct: 162 ARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALVLRVG 208


>gi|257056288|ref|YP_003134120.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256586160|gb|ACU97293.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 239

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E     ++ L      +  +           R+                  
Sbjct: 3   ISVFLVDDHEIVRRGLTDLLEAEPDMRIVGEAASAGEALARI---------------PGT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +  +        +     L    +              
Sbjct: 48  GADVAVLDVRLPDGNGVELCRELLST--------VPGLRCLMLTSYADDEALFNAIMAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       + +   +  +   G ++       +        N  +           L+
Sbjct: 100 SGFVLKQVLGSDLVSAVRTVGSGGSLLDSKTTSAL-------MNRIRREREESDPVSGLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  I EG T+ EIA  L ++  TV NY++ ++ K   + R+ A   A   
Sbjct: 153 EQERAVLDLIGEGLTNREIAARLYLAEKTVKNYVSRLLGKLGMQRRTQAAVLATEL 208


>gi|171910618|ref|ZP_02926088.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 213

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 26/233 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + +  +D+     +  +  R + L      +        +                 
Sbjct: 2   PIQVSIVEDDKTTREHLMSIINRGEGLVCARAYNSAEDAIREV---------------PD 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D      +D  +      +    +  +        L +   L    +             
Sbjct: 47  DPPDVLLVDINLGGRSGIECTAVLKST--------LPKLQVLMVTTYDDTKMIFEALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       A I   +M +   G  +      +   + ++  N  +       +   L
Sbjct: 99  ASGYILKRTPAAGIVEAVMEIHNGGAPMSVPIARK---VVSHFHNESRRDVRDRPEFSGL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE E LT +++G    EIA  LGIS +TV  ++  I  K   +TR+ A+  
Sbjct: 156 TPREFEILTQLAKGLQYKEIADQLGISTSTVRGHLHVIYGKLHVQTRTEAVIK 208


>gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 232

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 28/249 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + +  + E   + V            +  L  +     +   +          +
Sbjct: 5   ETAKIRVAMVDDHEMFRAGV------------IATLRDSFDIVGQAADV-----PGSVAM 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  V           +A S       V    +    P      +  +  
Sbjct: 48  IAQTKPQVVLLDVHVPGGEGGGGAEILAKSRPYSPTTVFLALSVSDAP-----QDVGSVI 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYD 177
                 Y + T   A +   +  +     +        +         A        +  
Sbjct: 103 RAGAQGYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSTFQGVPAAGSDGGADGAAR 162

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|261212443|ref|ZP_05926728.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341]
 gi|260838374|gb|EEX65030.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341]
          Length = 208

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 72/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+  ++      +  E   A     +         +D  +  
Sbjct: 5   ALIDDHTIVRSGFAQLLNLEQDIAVQGEYESAKEAFHA-----LTHHEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +      +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRSYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|238763427|ref|ZP_04624390.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238763508|ref|ZP_04624470.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238698290|gb|EEP91045.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
 gi|238698371|gb|EEP91125.1| Two component transcriptional regulator, LuxR family [Yersinia
           kristensenii ATCC 33638]
          Length = 209

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 28/229 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--LDSI 77
            + +          A+++ L+  +       +  E                     +D  
Sbjct: 4   VALIDDHIVVRSGFAQLLSLEKDIRIIGEYGSAAEAW-------SNLPAIDVHVAVMDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +           +     +   ++ T     +      + Y +     
Sbjct: 57  MPDESGLSLLKRLRQK--------MPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +   G  +  D L  +           +       +   LT RE E    +
Sbjct: 109 DELVQALRTVNGGGLYLCADALRAL-----------RHMPQQPQQLAVLTPREKEIFQLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G +   IA  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 158 INGISVKSIADQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 215

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V       ++L  ++ LD                G S   L          LD+ +
Sbjct: 3   RLVIVEDQTAIREMLVEILRLDANYQLVGE-----SGDGQSALALCLEVKPDLLVLDAKL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 DL+R ++          L     L                   + +   T  + 
Sbjct: 58  PGLNGVDLLRRISKK--------LSGMRVLVFSGHENPVLIREMLEAGAHGFVEKTAGLF 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             + GL  +   G          +            +          LT RE E L  ++
Sbjct: 110 EFKKGLETVASGGTYFGPAVAALL--------RNVVANPSASNTADFLTDREREILQLVA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E  ++ EIA  LGIS  TV+N+  ++MRK      +    YA+   ++
Sbjct: 162 ESHSTKEIAAKLGISIKTVDNHRTNLMRKLNLHDVASLTRYALEVGLI 209


>gi|308049926|ref|YP_003913492.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632116|gb|ADN76418.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 213

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  +     + +S +      +  +  ++                G       R  
Sbjct: 2   INVLLVDDHALVRTGISRILEDERGIKVVGEVED---------------GEQAVAWCRKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   V+   P      A   
Sbjct: 47  DCDVILMDMSMPGIGGLEATRKILRYNPD--------ARIIILTVYTEEPIPSKVMAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +     A +   + ++    R I  +   ++ L         K ++       +L+
Sbjct: 99  AGFLTKNAPPADMVQAIRVVASGQRYIAPEIAQQMAL---------KPFNPEKNPFDDLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    ++ G+   EI+  L +S  TVN+Y   +  K            A+R  +V
Sbjct: 150 ERELQITMMVTSGQKVSEISEQLNLSPKTVNSYRYRLFEKLKISGDVELTRLAIRYGMV 208


>gi|302536340|ref|ZP_07288682.1| two-component system DNA-binding response regulator [Streptomyces
           sp. C]
 gi|302445235|gb|EFL17051.1| two-component system DNA-binding response regulator [Streptomyces
           sp. C]
          Length = 231

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 74/242 (30%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V                   V        + +        ++  
Sbjct: 14  RVRVVLVDDHRMFRTGVQAEIG--------ETARTGVEVVGEAADVDQA-----VTVITA 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A         V      L   V     + I    G 
Sbjct: 61  TRPEVVLLDVHLPGGGGVEVLRRCAPLMAAAENPV----RFLALSVSDAAEDVIGVIRGG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 117 ARGYVTKTITGTDLVDSVFRVQDGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 229

Query: 245 IV 246
           +V
Sbjct: 230 LV 231


>gi|302558898|ref|ZP_07311240.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302476516|gb|EFL39609.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 237

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 76/242 (31%), Gaps = 28/242 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRW 66
           V +VL  +     + V     ++                  +  + E         ++  
Sbjct: 21  VRVVLVDDHRMFRTGVQAEIGQTG--------------QTGVEVVGEAADVDQAVTVITA 66

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A    D    V      L   V     + I    G 
Sbjct: 67  TRPEVVLLDVHLPGGGGVEVLRRCAPLMSDAERPV----RFLALSVSDAAEDVIGVIRGG 122

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 123 ARGYVTKTITGTDLVDSIFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 175

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 176 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 235

Query: 245 IV 246
           +V
Sbjct: 236 LV 237


>gi|256785730|ref|ZP_05524161.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
 gi|289769622|ref|ZP_06529000.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
 gi|289699821|gb|EFD67250.1| two-component system DNA-binding response regulator [Streptomyces
           lividans TK24]
          Length = 251

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     +          +  V        + +        ++  
Sbjct: 34  RVRVVLVDDHRMFRTGVQAEIGQ--------TAETGVEVVGEAADVDQA-----VTVITA 80

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A    D    V      L   V     + I    G 
Sbjct: 81  TRPEVVLLDVHLPGGGGVEVLRRCAPLMSDAERPV----RFLALSVSDAAEDVIGVIRGG 136

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 137 ARGYVTKTITGTDLVNSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 189

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 190 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARR 249

Query: 245 IV 246
           +V
Sbjct: 250 LV 251


>gi|291614955|ref|YP_003525112.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585067|gb|ADE12725.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 216

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 31/237 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +       V+H  +       +             + L              
Sbjct: 4   PIRILLADDHPLFREGVAHSLSVEPDFEVVAQAGSGEEAVEMAHRL-------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D ++       +    A  +      V++        V       +      
Sbjct: 50  ------HPDIVLLDVSMAGMGGIAAAGKIAAEAPVVRIMM---LTVSENRENLMAALKAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       + +R     +      +      ++    +                 EL
Sbjct: 101 AHGYVLKGVSASELRSITRRVAGGEAYVTPALAADMLTEFSNPH--------PIDSFSEL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE   L  +S+G T+ EI     ++  TV +Y+ SI++K   ++R+ A   A++ 
Sbjct: 153 TARETTILELLSQGLTNREIGERTYLAEKTVKHYMTSILQKLHVRSRTEAALIAMQR 209


>gi|229526813|ref|ZP_04416217.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229336971|gb|EEO01989.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 207

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGIHQLLSFDEEFEVVAEAGN---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + +        LT 
Sbjct: 101 GYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNREHTSNPFEALTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 221

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 19/222 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           R++ +D      + +  +    G               +         LD  +      +
Sbjct: 2   RLLLVDDHTLLRVALGDMLSQHGYQVEHAGTEIEALSALAKSPPDVVLLDLRMPGSGGLE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +++ +   + +           +         + +       N Y     + A +  GL 
Sbjct: 62  VLKRIRSRDSE--------LPVVMLTSSDEERDLLQALQAGANGYLVKDAEPAELIQGLE 113

Query: 146 LLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
            +      +       +   +                     LT RE E L  ++  +++
Sbjct: 114 KVLAGQTAVASRLTDTLVQMMAGGRSQREGAEASRPPDPFAALTPREREILMHVARAESN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  LG+S  TV  +I SI+RK   K+R  A   AV   +
Sbjct: 174 KVIARELGVSDGTVKLHIKSILRKLGVKSRVEAAVKAVDLGL 215


>gi|405947|gb|AAA16411.1| narP [Escherichia coli]
          Length = 225

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDPGSEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 65/227 (28%), Gaps = 16/227 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVRCMALSE 94
           +  +    +  + +    +            D+          V+   P +  R      
Sbjct: 14  LREVSSVSALWLLVQRFAKAQDFRTVTYHSIDVQSLGDTSFGAVAIGIPAEFHRMYTEEH 73

Query: 95  KDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIR 141
                           P F                  N     G  +      F      
Sbjct: 74  LYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGLVCQVFGPQARN 133

Query: 142 IGLML-LFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISE 199
             + +   P         + ++ + + +    F          +  L+ RE+E L WI+ 
Sbjct: 134 ALVSIGFHPDRPRPTDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELELLRWIAR 193

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK++  IA I+G+SR+TV+  +  +  K     R+ A    +   ++
Sbjct: 194 GKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGLAFGLI 240


>gi|257067250|ref|YP_003153505.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558068|gb|ACU83915.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 213

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     + +  L      +  +  +D        +  L+   G          
Sbjct: 3   IRVMMVDDHPVVRAGLRALLEADARVEVVAEVDSGDGALEELERLSTLGG---------- 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++        +  +  +   K          L    F    + +       
Sbjct: 53  ----DLPDLVLMDLNLGAGIDGIETTR--KVRARHPDVQVLAVTTFDAEADIVGALEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +        ++  +    +                       L+
Sbjct: 107 TGYVLKDSPTEALIAAVGEAAAGRSVLSPEVQQRL-------------VARMTSPATALS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G T+ E+A  L IS +TV  ++  +  K    +R+ A+  A    ++
Sbjct: 154 PREAEILEALATGATNREVAKRLFISESTVKTHLVHLYEKLGVDSRTAALRVARERRLI 212


>gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E   + +  + +  + +     +         +               
Sbjct: 1   MTGIRVMLVDDQELLRASLRTVLSADERIEVTHDVANGSDAIEVVRR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   +LD ++       +    A +E  +     +         F      +    
Sbjct: 48  -------HRLDVVLMDIRMPRMDGVAATAEIVRIAPATRVLM---LTTFDDDELVVAAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y +     A +   +  +      +       I  L                   
Sbjct: 98  AGASGYLTKDVRPAALAQAVCDVASGTSALTPGVAATILDLVRQVPIR------RTAALD 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REVE    ++ G+++ EI   L +S NTV +++ ++++K   + R  A+ +A  N 
Sbjct: 152 GLTPREVEIFGLLARGRSNSEICAELVLSENTVKSHVRAVLQKLDLRDRVHAVIHAYENG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 217

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 19/228 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +       ++LA ++  D                G S   L          LD+ +
Sbjct: 3   RLIIIEDQTAIREMLAEILRSDPNYQLVGECG-----DGQSACALCLEQKPDVIVLDAKL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D++R +           ++                        + +   T  + 
Sbjct: 58  PGLNGVDVLRRIEKQL-----PNVRVLVFSG---HENPTLVREMLEAGAHGFVEKTAGLM 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             + GL  +   G          + ++ A   +   +          LT RE E L  ++
Sbjct: 110 EFKRGLETVANGGTYFGPAIAAMLRMVVANSGSRAPAGVDS------LTDREREILQLVA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E  T+ +IA  L IS  TV+N+  ++MRK      +    YAV   ++
Sbjct: 164 ESYTTKDIATKLDISAKTVDNHRTNLMRKLNLHDVASLTRYAVEIGLI 211


>gi|300694462|ref|YP_003750435.1| nitrate/nitrite response regulator in two-component regulatory
           system with narx, regulates anaerobic respiration and
           fermentation (luxr/uhpa familiy) [Ralstonia solanacearum
           PSI07]
 gi|299076499|emb|CBJ35824.1| Nitrate/nitrite response regulator in two-component regulatory
           system with NarX, regulates anaerobic respiration and
           fermentation (LuxR/UhpA familiy) [Ralstonia solanacearum
           PSI07]
          Length = 217

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + +  L  R      +                    G       +  
Sbjct: 3   IRILLIDDHALFRTGIRLLLQRQPDFEVVDEASD---------------GLEGIKRAQQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           L     +   V     E         
Sbjct: 48  RPDVILLDLNMPGLSGLETLQLLVQD--------LPDAAVVVLTVSEEADELKATLRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +  G+        +I      ++    A+     ++          LT
Sbjct: 100 RGYLVKNIEADALVAGVRKAAAGEPVIAESMTAKL---VAHFRAPERAAQPEAIPVERLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  +  G ++ EIA  L ++ +TV  ++ +I++K    +R     YAV N +
Sbjct: 157 ARERDIVQGLVRGDSNKEIARALDVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214


>gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
 gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni
           CNB-2]
          Length = 239

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 70/224 (31%), Gaps = 13/224 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVRCMA 91
              +       +    + A+   +G   F+L        +            F     + 
Sbjct: 13  ALAIEGARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDWFGTGAPVD 72

Query: 92  LSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIRI 142
                ++  V +   E   P F              +  P G   +      F +  +  
Sbjct: 73  AETYVRHCPVTRHILETNQPFFWTKTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEG 132

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEG 200
            + L   +           + L+A       +       ++    L+ RE E L W + G
Sbjct: 133 AMSL-GGERIDASPQARLALELIAQIAFRTARRLLELPAQEELGPLSDREREVLAWTAAG 191

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +   EIA  LG+S  TV N++  I ++    T + AI  A+RN 
Sbjct: 192 RRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNG 235


>gi|302549529|ref|ZP_07301871.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467147|gb|EFL30240.1| two component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 221

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    L      +              R+  L               
Sbjct: 2   IRVLLADDQSLVRAGFRALLDAQPDIEVAAEAADGEEAVRRIREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + S       R +           L+    +    F              
Sbjct: 47  RPDVVLMDIRMPSLDGLAATRRVTE------DPSLKDVKVVMLTTFELDEYVFEAIRSGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +   +   +  +     ++       +                       LT
Sbjct: 101 SGFLVKDTEPDELLRAVRAVVAGDALLSPGVTRRLIGE----FAARSKEPAAADALASLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G ++ EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 157 EREREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRTMVKLNARDRAQLVVLAYESGLV 215


>gi|238792677|ref|ZP_04636309.1| Two-component response regulator [Yersinia intermedia ATCC 29909]
 gi|238728033|gb|EEQ19555.1| Two-component response regulator [Yersinia intermedia ATCC 29909]
          Length = 210

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S+  + +            +                 + 
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSEDFSTIYESVDGSEALEILK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   +N          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSNH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|256370998|ref|YP_003108822.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007582|gb|ACU53149.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 216

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 75/236 (31%), Gaps = 28/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSH-LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           V IVL  + +     V   L   +D +  +            + ++              
Sbjct: 3   VTIVLVDDHQVIIDGVRAMLAPYADRVTMVGSAKTRAELFEVLESV-------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D+ +++D  F+++  +          V+          +             
Sbjct: 49  -HPDLIVTDARLTNDSGFEILEDLQRRGVAV--PVVFYS------AYDDEAYLFRALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   L        +I       + LLA       +  +   G    L
Sbjct: 100 ARGYLLKQASGEELVGMLERAAGGETMIDAALAGRVALLA----ARLQFGEFWPGAHLGL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T RE E L  + +G ++ +IA  L +   TV  +++SI RK   K R+ AIA A+R
Sbjct: 156 TQRESEILDLVVKGLSNRDIAQRLFLGEETVKTHLSSIYRKLKVKGRAEAIAVALR 211


>gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 212

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +VL  +       +  +  R+D L  +                          +V
Sbjct: 1   MKPIRLVLVDDHAILRQGLRSVLERADDLIVVGEAASESE---------------AVAVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +S+   F+ +   A            +   L    F      +    
Sbjct: 46  GATSPDVVLLDLKLSAGSEFEGLTLCAKL-----SAAHPKLGLLVLTTFLDEDLVVRAVH 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   +   +  +              +           +S         
Sbjct: 101 AGARGYVVKDVDTTELVRAIRAISAGDSAFDSRSAAAV----------VRSMSGRSESRA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT REVE L  ++ G ++++I   L IS  T   ++++IMRK     R+ A+  A +  
Sbjct: 151 QLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKLEVSRRAEAVYAASKRG 210

Query: 245 IV 246
           ++
Sbjct: 211 LI 212


>gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 257

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 13/217 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           AR+  +   + +T      T     +H  LV    F    +DS ++     DL+  +   
Sbjct: 49  ARLCAILSDLDYTADALTYTCCPEEAHAQLVERP-FDMVLVDSSLAHGNGIDLIGALHA- 106

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                   +               + ++      + Y     D   + + L      G  
Sbjct: 107 ----RDPRMPIVVISDP---AAEADVMSALRAGASGYLLKERDDTELSVSLRSALRGGMP 159

Query: 154 ILR----DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           I        L  +     + A    +          L+ RE+E L  I  G T+ EIA  
Sbjct: 160 IDPFIARQVLRSLVPADPHAACSPPAGCAGPEARSPLSTRELEILRCIDRGATNREIAAA 219

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  T+ +++ +I +K   KTR+ A   A R  ++
Sbjct: 220 LSLSTLTIESHVKNIHKKLGVKTRTQATFEARRYGLL 256


>gi|324006555|gb|EGB75774.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 57-2]
          Length = 223

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 63/233 (27%), Gaps = 31/233 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 13  EATPFQVMIVDDHPLMRRGVRQLLELDSGFEVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A
Sbjct: 162 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214


>gi|295681500|ref|YP_003610074.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441395|gb|ADG20563.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 215

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +  T       E   GA+   L+R        LD  +      
Sbjct: 4   VLLADDHTLVRDGLRHILQQTNGFEVAGEACDGATTIALIRATQAHVLVLDLSMPGRNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L++ +   + D           L   +       +       + Y +     A +   +
Sbjct: 64  ELIKQIKEEKPD--------LRILVLTMHAEQQYAVRAFKAGASGYLTKESASAELVGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +               A+              L+ RE +    + EG++  
Sbjct: 116 TKVASGGVYVSLAMAERFAQTLNEPADAL--------PHQRLSDREFDVFRRLVEGQSIT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  T++ +   I+ K      +G + YA+R+ +
Sbjct: 168 EIANELCVSVKTISTHKTRILEKMQMPNENGLVRYAIRHKL 208


>gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides
           sp. JS614]
 gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 215

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 61/227 (26%), Gaps = 26/227 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       D   R++     V             G     +V     +   +D  + 
Sbjct: 8   VLVVDDHTLHRDGTRRILEQYDDVDVVGDA-----ASGEDALAMVNRLHPRVVLMDIRLP 62

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +     D           L    +                Y S T     
Sbjct: 63  GMNGIEATRRIRERHPD--------TRVLIVTAYDDEEYVRGAFDVGAAGYLSKTAPGRE 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +     ++    +  +                       LT RE   L  ++E
Sbjct: 115 LVEAVRAVAGGNSVLQPTLMAAL-------------LAKRSSPANTLTDRERAVLRLLAE 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + +IA  LGIS  TV  +   I  K    +R+ A+  A+  N++
Sbjct: 162 GMHNKQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANLL 208


>gi|94309035|ref|YP_582245.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93352887|gb|ABF06976.1| response regulator, NarL-family [Cupriavidus metallidurans CH34]
          Length = 210

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +         +              ++                  
Sbjct: 2   IRVLIADDHEIVRAGLRQFIAEEPDIEVTGEAGSGDEVMAQLR---------------DS 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D+++ +           L        P        I       
Sbjct: 47  EFDVLVLDISMPDRNGIDVLKLIRQRL-----PALPVLILSTYP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +         + K  D    +   L+
Sbjct: 99  SGYLTKESAPDDLVKAIRTVAQGRRYVSPTVADLL------IGGLDKPTDQPVHR--TLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +S G++   IA  L +S  TV+ Y + I+ K   KT +    YA++N +V
Sbjct: 151 EREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209


>gi|290454885|emb|CBI67623.1| sR protein [Pseudomonas fuscovaginae]
          Length = 237

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 14/228 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L+          + + +  +        + L              +SS++          
Sbjct: 9   LSLFAEAKTEEEFLLLLEKIIRSFEFEQYSLGLRFPLPISSPKFHLSSNYSPAWESAYID 68

Query: 93  SEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLT---FDVARIR 141
           +        ++       P+  +                  + + +C+ +    D   + 
Sbjct: 69  NNYFSIDQTVKHGLTEHRPLCWSADAFTEHLHFWEDAKYYQLVHGWCTPSRAKHDTMGML 128

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH---WGKDFELTGREVECLTWIS 198
             +    P   +   ++  ++  ++    +   ++            LT REVE L W +
Sbjct: 129 SLVRSASPITSLEFNEKETKLLWISHIAHSTMLNFIAPNYIPEIAATLTVREVETLKWSA 188

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  E  +IL I   TV  ++ + MRK  +  +  A   A    ++
Sbjct: 189 TGKTYTETGLILSIDERTVKFHLVNAMRKLHSSNKVEAAMKAYALGML 236


>gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 210

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + V   P   + L  ++ L+  + +     + T  +      L++        LD 
Sbjct: 4   PIRIAMVEDHPVVREGLRVLLNLEPDMEFVGEAESATSAL-----ALIQRVPVDVLLLDL 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           ++  +   DL+  +                 L    F          +   + +   T D
Sbjct: 59  VLGEEDGIDLIPALRK--------AAPETRILALSSFTDPARMARLASAGADGFLPKTVD 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +     +  R  L  +           +       +  +LT RE + L  
Sbjct: 111 PTHLLAAIRQVAAGRVVFDRAMLKALQ----------EPDAEEAKRLAQLTPRESQILRQ 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G ++ EIA  L IS  TV  ++  I  K   + R+ A   A+R+  +
Sbjct: 161 VTKGLSNKEIADRLQISERTVKAHLQHIFDKLGVQDRTSAAVLAIRHGWM 210


>gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 209

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 67/239 (28%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +     + +  L +    +  +              AL               
Sbjct: 5   VRLVICDDHAMVRAGLLALLSSDPAIEVVGEASTGEEAVSLAAAL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++      + +  +  + +                 F T  +     +   
Sbjct: 50  -----RPDVVLMDLQLGEGIDGVEATRRILAGPGASHVLV--LTTFDTDTDISRAISAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +          +A+      +          +LT
Sbjct: 103 TGYLLKAEKPEELFAAIRSAAAGRPALSP-------PIASRVMAQMR------SPLPQLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  + +G  + EIA  L IS  TV  ++  I  K    TRSGA+A A    ++
Sbjct: 150 DREQDILDQLGQGLGNKEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIAKERRLL 208


>gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 199

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   +     M  +     G     LV+        +D  +      D  
Sbjct: 7   AEDQQMLLGALSSLLDLEEDMSIVGSASNGEEAVQLVKKHQPDVCIMDIEMPIMSGLDAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +   +             +    F              N Y         +   +  +
Sbjct: 67  ENIKDLD----------CKVIILTTFARSGYFQRAVKAGVNGYMLKDSPSDELANAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               RI   + +                 D  + +   LT RE E L  +++GK++ EIA
Sbjct: 117 MAGRRIYASELV-----------------DEVYSESNPLTEREREVLVHMADGKSTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IL ++  TV NYI++I+ K     R  AI        
Sbjct: 160 NILHLTNGTVRNYISTILDKLEVGNRIEAITKVKEKGW 197


>gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136]
          Length = 220

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 18/231 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-------YVGASHFLLVRWDLFQEQKLD 75
           ++  P  S     +  ++   S+   +  + +                    + +  + D
Sbjct: 1   MTDSPADSSAPRIIWIVEDHASFRRTLARVVQSEPDLSCAHDFDSCETALEGMTRFTRPD 60

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            I+       +     +    +          +   VF    +           Y   T 
Sbjct: 61  VILLDVGLPGMSGLQGIRLFRERSP---DTLVIILTVFEDDEKIFDAICAGAAGYLLKTA 117

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   +      G  +       +  + +               D+ L+ RE E L 
Sbjct: 118 GADAIVSAIREALAGGSPMNPRIARRVLEMFSKL--------APKTHDYGLSAREKEILD 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +G    EIA  L +S +TV+ Y+  I  K    TR+GA+A A++  ++
Sbjct: 170 LMVKGLIKKEIADRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALKERLI 220


>gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 218

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 25/237 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +DE     +     R   L  +   +                G +   L    
Sbjct: 7   LKILLVEDDELFRLGLVTRLQREVDLEIVAEAND---------------GETAVELANQY 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +      +  R +          +L   +     +   L       A   
Sbjct: 52  LPDVVLLDIGLPGIGGVEACRQIKEQ--HPDLPILVLTSHSQTALIDRL------IAIGV 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC    +   + + L  +         D+L    + A +      + D        LT
Sbjct: 104 SGYCLKGIEAEHLVLALRSVAAGASWW--DKLGTTEIYAEFSQKNPINTDETKLIANLLT 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E L  I+ GKT+ EIA +L I+  TV  ++ +I++K   + R+ A   A+R N
Sbjct: 162 QREQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALRMN 218


>gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 208

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 31/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +S L    D +  +                    G   F   + +
Sbjct: 1   MKVLIVDDDALIRESLSILLDLEDEIEIIGTCAN---------------GQEAFDFCKNN 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +  S         +    +    F              
Sbjct: 46  RPDIVLMDIRMPIMDGVLGTKVIKES--------FKDIKVVILTTFKDDEYIKEALKNGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFEL 186
             Y         I   L  +     +  ++        A   +N  K    + G + + L
Sbjct: 98  EGYILKNQSSDSIIDSLKAVVNGNMVFEQNV-------AKTISNFIKEDKSNNGLEQYNL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE+E L  I +G ++ EIA  L +S  TV NYI S++ K   + R+    + ++N
Sbjct: 151 TEREMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITSLLEKLELRDRTQLAIFYLKN 207


>gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
 gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36]
          Length = 244

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 16/227 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVRCMALSE 94
           +  +    +  + +    +            D+          V+   P +  R      
Sbjct: 10  LREVSSVSALWLLVQRFAKAQDFRTVTYHSIDVQSLGDSSFGAVAIGIPAEFHRMYTEEH 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIR 141
                           P F                  N     G  +      F      
Sbjct: 70  LYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGLVCQVFGPQARN 129

Query: 142 IGLML-LFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISE 199
             + +             + ++ + + +    F          +  L+ RE+E L WI+ 
Sbjct: 130 ALVSIGFHHDRPRPSDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELELLRWIAR 189

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK++  IA I+G+SR+TV+  +  +  K     R+ A    V   ++
Sbjct: 190 GKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFGLI 236


>gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 215

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 13/220 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G      +         +D  +     
Sbjct: 3   QILLVDDQHLIRQGLKSMLESNAEIQVIGEAENGQRALEQIPALQPDIVLMDVRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +A    D           L    F                Y     +   + + 
Sbjct: 63  VATTKAIAQQYPD--------VKVLVLTTFDDDEYVFQAMRVGAKGYLLKDTEPDELMLA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++    ++      +    A     +         +  +LT RE++ L  I+ G  +
Sbjct: 115 IRSVYKGQTLLGPGLFEK----ALIPIPVPVPSVEPPPELAQLTPRELDVLRLIASGANN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S NTV NY+ +I+ + + + R+ A  +A   
Sbjct: 171 REIAESLFLSENTVKNYVTNILSRLSLRDRTQAALFAHSL 210


>gi|54025695|ref|YP_119937.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54017203|dbj|BAD58573.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 231

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 71/235 (30%), Gaps = 25/235 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  ++    + V+ +      +A +                    G       R 
Sbjct: 6   PLRVLVADDEPLVRAGVTGILGTDPGIAVVAEAGT---------------GPDALAAARA 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +++R +           +          F             
Sbjct: 51  HALDAVLLDIRMPGLSGLEVLRELRGEGHTVGCLFV--------TTFGEDDYIAEAVRLA 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +   + D   + +G+  +   G          +  L    A  F        +   L
Sbjct: 103 ADGFVLKSGDPRELILGVHAVASGGAFFSPVIARRL--LDGRPAARFDRAVAARRRFAAL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T RE E L  +  G ++ EIA  L ++  TV  +++SI+R T  + R  A   AV
Sbjct: 161 TPREQEILRLVGRGWSNAEIAAELHLAPGTVKVHVSSILRTTGARNRVEAALVAV 215


>gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 226

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 10/224 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE---QKLDSIVSSDWPFDLVR 88
           + A+++ +D        + A  E  G     +       E     +  ++ +D     + 
Sbjct: 1   MTAKLLLVDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETHVPDVIITDIMMPQMD 60

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A  E  +    L     +F        + I       + Y +  FD   +   +  L 
Sbjct: 61  GYAFLETVRQQPHLSHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLL 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKDFELTGREVECLTWISEGK 201
            +      +    +  LA   A +          +        +LT RE   L  + +G 
Sbjct: 121 RRQAAARDEAEPNLAELAQQIAELRAMLVQQGKRHPTAPPIQLDLTPREASVLQLVVKGL 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + EIA  L  S   +  Y++ +  KT T +R+  + +A+ + +
Sbjct: 181 MNKEIASQLNTSVRNIEKYVSRLFVKTGTSSRTELVRFALEHGL 224


>gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 234

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 10/192 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             GAS   +V+        +D  +      + +     +     +  +          ++
Sbjct: 51  ADGASALSVVKETQPDVVLMDLRMPGMDGLEAI-----THLRGRWPHIAIV---ILTTYN 102

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                +         Y         +   +        ++    +  +  L+        
Sbjct: 103 EDDLMLRGLRAGACGYLLKDTSSETMFQAIRSAARGETLLQPGVVARL--LSRASQERRP 160

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S       + EL+ RE+E L  ++ G+ S EIA  LGIS  TV  ++ SI  K    +R+
Sbjct: 161 SLGTRSSGEGELSERELEVLRKVASGERSKEIAAQLGISLRTVGAHLTSIYTKLGVDSRT 220

Query: 235 GAIAYAVRNNIV 246
            A+A A+   ++
Sbjct: 221 SAVAVALERGLL 232


>gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR
 gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283]
          Length = 249

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +      +G+  +        ++   + ++ S +P + +R    +       V+  
Sbjct: 15  LQTYIQRKLSPLGSPDYAYTVV--SKKNPSNVLIISSYPDEWIRLYRANNFQLTDPVILT 72

Query: 105 PTELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLL--FPK 150
             +   P        +                 + N +  +  D       L ++     
Sbjct: 73  AFKRTSPFAWDENITLMSDLRFTKIFSLSKQYNIVNGFTYVLHDHMNNLALLSVIIKGND 132

Query: 151 GRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDFEL---------TGREVECLTWI 197
              + +    E G +     +     ++       +   L         + RE E L W 
Sbjct: 133 QTALEQRLAAEQGTMQMLLIDFNEQMYRLAGTEGERAPALNQSADKTIFSSRENEVLYWA 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA I GIS +TV  +I +++ K        AI   V  +++
Sbjct: 193 SMGKTYAEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241


>gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Synergistetes bacterium SGP1]
          Length = 229

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 62/238 (26%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +     +  +      +  +            +                  
Sbjct: 2   IKIVVADDHKLFRDGLRKILELEPDIKVVGEGADGEEALELLRQ---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-M 126
                  D  +       L R +                       +   + +   +   
Sbjct: 47  RPDVILFDINMPQMDGVQLAREIKARGIK---------AASVAVSAYDDEDCLATLSAEG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   +   + +   +         +           A      F           +L
Sbjct: 98  VKGFVLKSSGRSELIAAIRAACRGEPYVDPKV-------AGKLMTSFSRRKNENSLLDDL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE   L W+S+G ++ E+A    +S  TV N+++ +++K   + R+ A   A +  
Sbjct: 151 SPREKVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSHMLKKLELRDRTQAAILAWKLG 208


>gi|227894641|ref|ZP_04012446.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863536|gb|EEJ70957.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 223

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 67/182 (36%), Gaps = 3/182 (1%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +  ++ K D ++       +   +      + Y  ++    +    F       +   
Sbjct: 39  ALESIKKNKPDIVLMDIRMPVMDGTVCTKHIKEKYPDIK---VIILTTFDDDDFIFSALK 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +   G +I  +   ++  L +  A    +  V+  +  
Sbjct: 96  YGASGYLLKGASPQELYKAIDTVNAGGAMINPNIAGKVFKLFSKMAQSNYAISVNTNEVK 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+  E + +  +  G+T+ EIA  L +S  TV NYI+ I+     + R+    +AV+  
Sbjct: 156 NLSKSEWQVIQQVGLGRTNKEIAQKLFLSEGTVRNYISKILSCLQLRDRTQLAIWAVQKG 215

Query: 245 IV 246
           ++
Sbjct: 216 VI 217


>gi|332143243|ref|YP_004428981.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553265|gb|AEA99983.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 217

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 19/228 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +       V   P     L ++I  +  +       +     G     +        
Sbjct: 1   MFEDKPATIMMVDDHPLLRKGLNQLIEFEDDLEVIGEASS-----GKEAIEMAVQLEPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + ++ +     D           +   V     + +       + Y 
Sbjct: 56  ITLDLNMQGMDGLETLKHLRDKGVD--------SRIIMLTVSDNDEDVVEAVRSGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D   I   L        ++       +                       LT RE+
Sbjct: 108 LKDMDPEDIVDKLREAALGKMVMSAKLTEVLATALRKPERAGSRA------LASLTSREL 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E L  I++G ++  IA  L IS  TV  ++   ++K   ++R  A  +
Sbjct: 162 EILKLIAKGMSNKLIARELDISDGTVKVHVKHFLKKLNLRSRVEAAVW 209


>gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 244

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 29/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   + LA ++ +   +             G     L +        LD  + 
Sbjct: 45  VLIVDDHPMVREGLAGIL-MRSGIEVAG-----LGATGRQAIELFQSTRPDVVLLDLRLP 98

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 ++R +   +             +         E  +  +   + Y     D + 
Sbjct: 99  DSSGVQVLREIRALD--------ADARVVMLTSSQADAEIYSAMSAGASGYLLKGIDGST 150

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +   GR +  + L +                  +    +L+ RE+E L  +++
Sbjct: 151 LVQQLRHVASGGRAMSPEALEKF---------------TDYLTSRKLSEREIEVLRLVAK 195

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L ++ +T+  ++ S++ K     R+ A+  A++  ++
Sbjct: 196 GNSNKEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRGLL 242


>gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium
           tuberculostearicum SK141]
 gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 247

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 21/238 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P      A ++     +    +        G     L R        +D 
Sbjct: 14  PIRIGLVDDQPLVRAGFAMLLGSQEDLDVAWQA-----SDGDEVLDLARAQPADIVLMDV 68

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++          +                 +    F          +   + +     +
Sbjct: 69  QMARVNGIAATERLL--------PEFPDTQVIMLTTFDDQNFVHGAISAGASGFLLKDVE 120

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--------ANMFKSYDVHWGKDFELTG 188
              +   +  +     ++      ++                    +         +LT 
Sbjct: 121 PEELLAAIRTVHSGEAVLSPRITAQVLQQLRSGQSASQPDSHATPVAAAATAPPAEDLTP 180

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++ L  ++ G ++ EI+    +S  TV  ++  I+ KT ++ R  A+ YA+ + +V
Sbjct: 181 RELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGSRDRVHAVLYALTHGVV 238


>gi|300785449|ref|YP_003765740.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794963|gb|ADJ45338.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 234

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 64/233 (27%), Gaps = 23/233 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   V     +  + E   G     L R +      +D  +     
Sbjct: 4   RVLVADDQHLMRAGLRGIVGTAADLTVIAEASTGLQAVDLARRERPDVVLMDIRMPDMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  S              L    F           G    +       A +   
Sbjct: 64  LEATRLITAST---------DVRVLILTTFDLDDYVYQALRGGAGGFLLKDTPPADLLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-------------DVHWGKDFELTGRE 190
           + ++     ++       +    A +    +                        +T RE
Sbjct: 115 IRVIASGDALLAPSITRRLIAEFAARPEPARPGTAGAPGPGFAETGAAGPDPLASITDRE 174

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + L  ++EG T+ EIA  L I+  T   ++ +++ K   + R   + +A R 
Sbjct: 175 RQVLALVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIHAYRA 227


>gi|299533898|ref|ZP_07047264.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298718125|gb|EFI59116.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 223

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 24/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V + L  +D      ++           +                 +       L+  
Sbjct: 7   QPVRVFLVDDDSHIRRVIAQDLMGDSRTLLVGHACS----LREARKSIQQHDFDVLLI-- 60

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      DL+  +  +              +   V     +       
Sbjct: 61  ---------DLNLGDGEGLDLLELVQGTH--------PHVQSIIVSVTERDEKVFQAFEK 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y             ++ +   G  I      +I  L +              K+ +
Sbjct: 104 GAVGYLLKNSWFGDYAQAVLQVANGGASITPSLAKKILSLVSRSQTYVVPASSLT-KEEK 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I+ G +S EI+  L IS  TV+ ++ ++ RK   KTR+ A+  A    +
Sbjct: 163 LSEREIEILKLIACGYSSPEISTQLKISTLTVSTHVKNMYRKLQAKTRAHAVKAASLRGL 222

Query: 246 V 246
           +
Sbjct: 223 I 223


>gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 210

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 16/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D       L   +     +    E V G     L     +    LD  +   
Sbjct: 1   MVRILLAEDQGMVRQGLKMMIETDPELKVTGEAVNGKEAVTLCESHHYDLIILDIRMPVM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R M     ++          L    F+     +         Y     D   + 
Sbjct: 61  DGLEAARIMHSRWPER--------KVLILTTFNDDEYALEALRNGARGYMLKDADAVELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +      G  I           AA               D  +T RE+  +  + EG 
Sbjct: 113 RAIRSCLSGGLSIEEHV-------AAKVMPRLMKKTNDAAVDPAITPRELAIMKLVGEGL 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI+  L +S  T+ N+I++I+ K + + R+    YA+R+N+V
Sbjct: 166 SNKEISEELSLSVGTIKNHISAILDKLSLRDRTQLAIYAIRHNVV 210


>gi|238791898|ref|ZP_04635535.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238729002|gb|EEQ20519.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 245

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 74/233 (31%), Gaps = 30/233 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D V+    +       V
Sbjct: 12  NEDIKNYIQRRIKAYGDLRYSYLVMNK--KTPLHPTIISNYPMDWVQTYKRNNYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +    +   P                   N+     + N Y  +  D       L +   
Sbjct: 70  ILTAKDKVAPFAWDDNSVINIKSTDSAVFNLAREYNIINGYTFVLHDNNNNMATLNISNG 129

Query: 150 KGRIILRDRLWE-----IGLLAAYQANMFK-----------SYDVHWGKDFELTGREVEC 193
               I  D   E     I +L     +                +   G+    + RE E 
Sbjct: 130 SDDSISFDESIETNKEKIQMLLILTHDKMLGLYHKNNNKNNELNGVGGEREIFSPRENEI 189

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W S GKT  E+++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 190 LYWASVGKTYSEVSIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242


>gi|297564548|ref|YP_003683520.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296848997|gb|ADH62012.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 204

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 22/222 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E   G       R        LD  +S    
Sbjct: 4   RLLIVDDHPIVREGLKAFLGLYADLEVVGEADSGEEALSKSRALSPDLVLLDLQLSDGHG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +                    L    F          +   + Y         +  G
Sbjct: 64  LSFLPRFLSLPNPP--------KVLILTSFLEEDRLRQALSLGASGYLVKHAGPVALLEG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +    +  +                       LT +E E LT ++ G ++
Sbjct: 116 IRAAGRGEVPLDPAAVRLLA-------------RPARNPLASLTPKEREVLTHLARGMSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  LG+S  T+  +++S++ K   K R+ A   A    +
Sbjct: 163 KAIAQALGVSEKTIKTHVSSLLAKLNLKGRTQAALLAREQGL 204


>gi|184200079|ref|YP_001854286.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183580309|dbj|BAG28780.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 252

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 64/247 (25%), Gaps = 29/247 (11%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   P   D LA +   +                GA               +D
Sbjct: 6   DLCRLILVDDHPLMRDALANLFRAEPGFEVVGEASE-----GAGAVAACLDLSPDVVLMD 60

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +    +                 L    F TL   +       + Y     
Sbjct: 61  IRMPGMDGIEATAQIVAQ--------CPDTKVLALTTFSTLEYVVPALRAGASGYLVKDA 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIG----------------LLAAYQANMFKSYDVH 179
               I   + L+      +       +                    A            
Sbjct: 113 RHHEIVSAVSLIREDELALSPSVANSLANNVLGDVPVPSVRRGRQRGAMTQAAMSPPPGP 172

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT  E E L WI++G  + EIA  + +S  +V +Y++ +  K A + R   +  
Sbjct: 173 HPGAPKLTDCEQETLQWIAKGLNNAEIAERMSVSHGSVKSYVSHLCEKLAVRDRVQVLIS 232

Query: 240 AVRNNIV 246
            ++  +V
Sbjct: 233 GIQWGLV 239


>gi|163803038|ref|ZP_02196924.1| response regulator [Vibrio sp. AND4]
 gi|159173212|gb|EDP58041.1| response regulator [Vibrio sp. AND4]
          Length = 214

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      D          +               +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGVADSGEEAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVILMDMNMPGIGGLEATKKILRVNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  SGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE--------NPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISDQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGML 209


>gi|16760893|ref|NP_456510.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765285|ref|NP_460900.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141415|ref|NP_804757.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62180520|ref|YP_216937.1| response regulator [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161613492|ref|YP_001587457.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167552826|ref|ZP_02346577.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993515|ref|ZP_02574609.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234117|ref|ZP_02659175.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168239182|ref|ZP_02664240.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244793|ref|ZP_02669725.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168259770|ref|ZP_02681743.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168462515|ref|ZP_02696446.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822986|ref|ZP_02834986.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194451039|ref|YP_002045998.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470909|ref|ZP_03076893.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194733956|ref|YP_002114980.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197247624|ref|YP_002146076.1| response regulator [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197265053|ref|ZP_03165127.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198242641|ref|YP_002215139.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200389754|ref|ZP_03216365.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930976|ref|ZP_03221802.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205352357|ref|YP_002226158.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856538|ref|YP_002243189.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213053516|ref|ZP_03346394.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213421440|ref|ZP_03354506.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213426359|ref|ZP_03359109.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213580418|ref|ZP_03362244.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213650333|ref|ZP_03380386.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213857577|ref|ZP_03384548.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|238912480|ref|ZP_04656317.1| response regulator [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|289824069|ref|ZP_06543667.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25298759|pir||AE0749 invasion response-regulator sirA [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|1815641|gb|AAC44801.1| SirA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|2992526|gb|AAC08300.1| SirA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420481|gb|AAL20859.1| putative LuxR/UhpA family response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16503190|emb|CAD05696.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137042|gb|AAO68606.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128153|gb|AAX65856.1| putative response regulator (LuxR/UhpA familiy) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161362856|gb|ABX66624.1| hypothetical protein SPAB_01209 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409343|gb|ACF69562.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194457273|gb|EDX46112.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194709458|gb|ACF88679.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195634097|gb|EDX52449.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197211327|gb|ACH48724.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243308|gb|EDY25928.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288050|gb|EDY27437.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937157|gb|ACH74490.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602199|gb|EDZ00745.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320020|gb|EDZ05225.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205272138|emb|CAR36991.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205322666|gb|EDZ10505.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328417|gb|EDZ15181.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331883|gb|EDZ18647.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336342|gb|EDZ23106.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340682|gb|EDZ27446.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350674|gb|EDZ37305.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708341|emb|CAR32644.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247112|emb|CBG24935.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993933|gb|ACY88818.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158462|emb|CBW17972.1| invasion response-regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912937|dbj|BAJ36911.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320085435|emb|CBY95216.1| Response regulator gacA Global activator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224589|gb|EFX49652.1| BarA-associated response regulator UvrY [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616941|gb|EFY13849.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618181|gb|EFY15073.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625851|gb|EFY22670.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626303|gb|EFY23113.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632718|gb|EFY29463.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639060|gb|EFY35753.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640501|gb|EFY37154.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645990|gb|EFY42507.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649889|gb|EFY46310.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655497|gb|EFY51805.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660275|gb|EFY56513.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662956|gb|EFY59163.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668141|gb|EFY64300.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674099|gb|EFY70193.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675548|gb|EFY71622.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683040|gb|EFY79056.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686734|gb|EFY82712.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322714996|gb|EFZ06567.1| response regulator [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130226|gb|ADX17656.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195377|gb|EFZ80557.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199268|gb|EFZ84363.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204433|gb|EFZ89439.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207523|gb|EFZ92471.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211848|gb|EFZ96679.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217508|gb|EGA02227.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219584|gb|EGA04068.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323223586|gb|EGA07901.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231530|gb|EGA15643.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235973|gb|EGA20052.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240543|gb|EGA24586.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245435|gb|EGA29435.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323250205|gb|EGA34097.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253984|gb|EGA37808.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255489|gb|EGA39250.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262086|gb|EGA45649.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266209|gb|EGA49699.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270682|gb|EGA54123.1| response regulator [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326622888|gb|EGE29233.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326627408|gb|EGE33751.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332988836|gb|AEF07819.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 218

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +                    G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEA---------------CCGEDAVKWCRTN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   V    P          
Sbjct: 47  AVDVVLMDMNMPGIGGLEATRKIARSTADI--------KVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPAKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|325970171|ref|YP_004246362.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324025409|gb|ADY12168.1| two component transcriptional regulator, LuxR family [Spirochaeta
           sp. Buddy]
          Length = 227

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 73/240 (30%), Gaps = 24/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  + E     +  + +       +               L               
Sbjct: 2   ISVLIADDQELIRESLEIIISIDPQFRIVGAAKDGREVVEMAKTL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + V+ +   +             +    F              
Sbjct: 47  RPDVILMDIRMPEINGLECVKIIKQKDNTI--------KIIMLTTFDDDQYVYEAVKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + +         +   +  +   G I+      +I  L +  A           + F+ L
Sbjct: 99  DGFLLKGISKHDLLSSIATVHAGGTIVDPHTAQKIFSLFSRLATTPFRSMQEPDETFKAL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +E+  +  I +G ++ EI   +  S  TV NYI++I++K   + R+     A+++ ++
Sbjct: 159 TAQELRIMQLIGKGLSNKEIMTEVNFSEGTVRNYISNILKKLDLRDRTQIAILAIQSGLM 218


>gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 222

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D L   + +   +  +  M  ++   G     LV          D  +     F+
Sbjct: 5   LLVVDDDLGTRLSISDYLEMSGYM-VISATNGQEALELVEKHQPHLIVTDIAMPEMDGFE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+ +          + +    +F     +  E I       + Y    F++  + + + 
Sbjct: 64  LVKRVRSQ------PIFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIR 117

Query: 146 LLFPKGRIILRDRLWEI-GLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKT 202
            L  + ++I  +    I   L+ + ++  K +        +  LT RE + L  ++EG +
Sbjct: 118 SLLERSQLIEAEWRSRINEPLSNHTSSSHKRHHFHSFSTTNIHLTEREQQVLNLLTEGLS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L +S  TV  Y++S++RKT +  R+  + +A+ N+++
Sbjct: 178 NIKIGDSLHLSSRTVEKYVSSLLRKTDSSNRAELVRFALENDLI 221


>gi|260576451|ref|ZP_05844441.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
 gi|259021334|gb|EEW24640.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
          Length = 214

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 68/241 (28%), Gaps = 32/241 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +V+  +       V+   +    +  +      +        +T           
Sbjct: 1   MGKIRVVIADDHPLYREGVARSLSEDAGIDVVGQAQDALGAAELAERMT----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +R +                             +    
Sbjct: 50  ----PDVVLLDVSMPHGGGLAALRQIMELPNPP--------KVAMLTASEEDDVVMQALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGK 182
                Y         +   +  L      +          LA    N  +S         
Sbjct: 98  AGALGYILKGVGSRDLVAVVKDLAQGQSYVSPA-------LAGRILNAMRSGAAAKTANP 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE + L  ++EGK++ E+ ++L +   TV +Y+ SI++K   + R  A  +A  
Sbjct: 151 IDDLSKREEDILRLVAEGKSNKEVGLVLDLQEKTVKHYMTSILQKLHVRNRVEAAVFARE 210

Query: 243 N 243
           +
Sbjct: 211 H 211


>gi|119715235|ref|YP_922200.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119535896|gb|ABL80513.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 218

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 69/237 (29%), Gaps = 30/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + L  + E     +  L      +  +           R+ AL              
Sbjct: 9   KITVYLLDDHELVRRGIRELLESEGDIVVIGESGLAAEAARRIPAL-------------- 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      D+ R +           +          +       +     
Sbjct: 55  -RPDVAILDGRLPDGSGIDVCRDVRS-----VDPGIAAL---ILTSYDDDEALFSAIMAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y             +  +     ++             +  +  ++         +L
Sbjct: 106 AAGYILKQVKGTDFVETVRRVAAGQSMLDPAVTA-------HVLDRLRAGPRMDPSIEQL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T +E   L  I +G T+ +IA  L ++  TV NY++S++ K   ++R+ A  +A ++
Sbjct: 159 TAQEQRILELIGQGMTNRQIAAHLCLAEKTVKNYVSSMLAKLGLESRTQAAIFATKH 215


>gi|254464109|ref|ZP_05077520.1| two component response regulator [Rhodobacterales bacterium Y4I]
 gi|206685017|gb|EDZ45499.1| two component response regulator [Rhodobacterales bacterium Y4I]
          Length = 214

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 66/242 (27%), Gaps = 36/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V +++  +       +  +    D +  +  L        +M  L            
Sbjct: 2   ADPVKVLIVDDHPMVAEGIQSILESYDDIQVVGSLTDGRDAVNQMGRLA----------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +                 L   +  +     T  +
Sbjct: 51  ----PDVVLMDLNMPKLGGLSATEIILEQH--------PGTRILILSMHDSAEYISTALS 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         I+  +  +      +       +                  G   
Sbjct: 99  HGAMGYVLKDVPTDEIKQAIDAVMEGQTYLCTGAAGSL-------------KPKDNGARE 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + 
Sbjct: 146 ALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHG 205

Query: 245 IV 246
           ++
Sbjct: 206 VL 207


>gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
 gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +       +    +  L              
Sbjct: 2   PVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRRL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  S       V   P  L    F             
Sbjct: 48  -RPDVVAMDVRMPLLDGIEATRALLRS-------VAAPPKILVVTTFENDEYVYGALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A I   + L+     ++    +  +   A Y             +   L
Sbjct: 100 ADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRRLA--AEYGDGDGNRAARAALERARL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E L  ++ G T+ EIA  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 158 TGREGEVLRLMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217


>gi|284029283|ref|YP_003379214.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808576|gb|ADB30415.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 215

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V+ +    D           +     +  + E   G     L R        +D  +  
Sbjct: 1   MVTRVLLADDQAMVRTGFRLILDSEPGLQVVGEAADGEQAVRLARELRPDVILMDIRMP- 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                L+  +  +       V      +    +                +         +
Sbjct: 60  -----LIDGLQATRLLAGPGVADPCRVVVVTTYDIDENVYAALRAGACGFLVKDAGPNLL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        ++       +        +  ++      +   LT RE + +  ++ G
Sbjct: 115 VEAVRAAADGESMVSPSVTARL------LEHFTQAAAPRTARPHPLTEREADVVRAVARG 168

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +T+ EI   L +S +TV +++AS  RK   + R+    +A  N +V
Sbjct: 169 RTNGEITEELVVSLSTVKSHLASAQRKLGLRNRTELAVWAWENRLV 214


>gi|168698046|ref|ZP_02730323.1| response regulator receiver [Gemmata obscuriglobus UQM 2246]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E   + +  L    D    +  +  T      +    E          
Sbjct: 1   MTPIRVLLADDHEVVRTGLRTLF---DGHPDIEVVGDTADGAEAVRRTLEL--------- 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D  V       L    A           +         +           
Sbjct: 49  --------RPDVAVMDFSMPGLTGAGAAGRLRAAAPETKVLVVS---AYEDHGFVSQALQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   L  +   G  +      ++                      
Sbjct: 98  AGARGYVLKRSAAEELVQALRAVAAGGVYLEPRLAAQLA---------EGPAAAPPDSAE 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  ++ G  + EI   L IS  TV  Y    M K   ++R   + YA    
Sbjct: 149 ALSQREHEVLRLLALGYANKEIGARLRISVKTVETYKTRGMEKLNLRSRVELVRYAFERG 208

Query: 245 IV 246
            +
Sbjct: 209 WL 210


>gi|254424904|ref|ZP_05038622.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196192393|gb|EDX87357.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 216

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 64/222 (28%), Gaps = 24/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +     +  + E   G     L +        +D  +      
Sbjct: 14  LLIAEDHGIVRQAIVSILELQEDLTVVAEAKDGIEAVSLYQTHQPDITLMDLRMPQLEGV 73

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + ++ +  S          +   +    + T  +           Y     D   +   +
Sbjct: 74  EAIQRIRQSN--------PKAQIIILTTYDTDEDIYRGLQAGARGYVLKDADFEDLVKAV 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R +  +        A   A+   + ++   +           L  ++ G  + 
Sbjct: 126 RTVHGGKRYLPANV-------ALKLADRMTTEELTERERE--------VLNLLAFGSGNA 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +A  L IS  TV  ++  I +K     R+ A+  A++  ++
Sbjct: 171 SLAKALHISEGTVKFHVNHIFQKLGVHDRTQAVIVALKRGLI 212


>gi|302879267|ref|YP_003847831.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302582056|gb|ADL56067.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 211

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
                 D       L   +     M    E V G     ++R + +    LD  +     
Sbjct: 3   RALIVDDHAIVRQGLKRILDEAPGMVVGGEAVNGVQALKMIRAEKWDIVLLDISMPEKNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D ++ +            +    L   ++      +       + Y +      ++   
Sbjct: 63  IDALKQIMDEN--------KSVKVLILSMYPEDQYAVRMMKAGASGYMTKETAPEQLVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + I       +              D        L+ RE + L  I  GKT 
Sbjct: 115 IRQVVAGKKYISATLSELLLFECG--------SDSAKSPHETLSDREYQVLRLIGSGKTV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A +L +S  TV+ Y + I+ K   +  +    Y ++N ++
Sbjct: 167 SEVAKLLSLSVKTVSTYRSHILDKMNLRNNAELTLYVIQNGLM 209


>gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 213

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 64/225 (28%), Gaps = 16/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSD 81
           +S +    D       L   +     +  + E     +  +           LD  ++  
Sbjct: 1   MSSILLVDDHAVLRAGLRLLLDGQPDLRVIGEAEDVRTAVVQATTLQPDLILLDLSLTGS 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  +          V      L   +           A   N Y       A + 
Sbjct: 61  SGLAAIPALRA--------VAPHSRILVLTMHDDEGYVRQALAAGANGYVLKRAADAELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +      I      ++                       L+ RE E L  ++ G 
Sbjct: 113 AAIRAVLRGELYIHPALTRQL-------LEDLLPQTPALNPWESLSEREREVLLLVARGY 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L +S  TV  Y    M K   ++R+  + YA+ +N++
Sbjct: 166 TAAEIAEQLSLSPKTVETYRTRGMEKLGLRSRAALVQYALNHNLL 210


>gi|240171514|ref|ZP_04750173.1| two-component transcriptional regulatory protein [Mycobacterium
           kansasii ATCC 12478]
          Length = 218

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 70/237 (29%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     ++ L      L  +           ++ AL               
Sbjct: 2   VKVFLVDDHEVVRRGLTDLLASDPDLEIVGEAGSVSEAMAKIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +   + +           L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRDLLSDQPELRC--------LMLTSFTSDEAMLEAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +           +    H      LT
Sbjct: 99  SGFVVKDIKGMELARAIKDVGAGKSLLDNRAAAAL-------MAKLRGGAEHHDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A R  
Sbjct: 152 EQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASRLG 208


>gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 28/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +VL  ++    + +  + +    L  +                    GA    +VR
Sbjct: 5   SPIRVVLADDERMVRTALRAILSAEPDLEVVGEAAT---------------GAEAVSVVR 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +       L+  +  +E+       + P  +    F            
Sbjct: 50  DRRPDVVLMDVRMP------LIDGIRATERILADPG-EAPRIVVVTTFENDSYVYDALRA 102

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +     D   +   + L+     ++    +  +           ++          
Sbjct: 103 GAAGFLLKRTDADTLVGAVRLVARSDTLLFPAAVRTLAT------EHARTSPAPPAWVAR 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE E L  ++ G T+ EIA  + +   TV  ++AS++ KT  + R+ A+  A     
Sbjct: 157 LTGRESEVLRHVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAAYEAGF 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|145298550|ref|YP_001141391.1| response regulator [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851322|gb|ABO89643.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 214

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +  +                    G +     R  
Sbjct: 2   INVFLVDDHELVRTGIRRILEDVRGIKVVGEAQS---------------GETAVTFCRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  HPDVILMDMNMPGIGGLEATRKILRIRPD--------VRIIVLTIHSENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + L+    R I  +   ++ L     A+              L+
Sbjct: 99  AGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADE--------NPFKSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRYGML 209


>gi|251789132|ref|YP_003003853.1| response regulator [Dickeya zeae Ech1591]
 gi|247537753|gb|ACT06374.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      L  +    C                         +
Sbjct: 2   ISVFLVDDHELVRAGIRRILDDIKGLKVVGEAQCGEDAVRWCRN-------------NSN 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       +   ++    +   +    P          
Sbjct: 49  GVDVVLMDMNMPGIGGLEATRKIVR-----FSPEIK---VIMLTIHTENPLPAKVMQAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +       E L
Sbjct: 101 AGYLSKGATPEEVICAIRSVHAGKRYIASDIAQQMAL---------SQLEPQTETPLECL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 SERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIRHGL 210


>gi|124004721|ref|ZP_01689565.1| transcriptional regulatory protein DegU [Microscilla marina ATCC
           23134]
 gi|123989844|gb|EAY29373.1| transcriptional regulatory protein DegU [Microscilla marina ATCC
           23134]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 23/240 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I +  + +     ++ +  +   L   +  +       ++               
Sbjct: 1   MNTITIAIADDQQLFREGLTFIIHQHADLKIALEAEHGQDLLNQLAQ------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L +   +D  +      +           + Y  ++    +   V+      +    
Sbjct: 48  ADKLPEVILMDIKMPQMDGME-----CAKILKQRYPKIKI---ITLTVYDQEDYVLHLLD 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y         +   +  +  KG            +L+  +     S       D 
Sbjct: 100 LGVNGYLRKLTSGQDVCKAIRTVCEKGYYFDDFVTQ--IMLSGLKRKRQISSKPKVDDDV 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE E L  I +  T+ EIA  L +S  TV  +  +++ K   K   G +  A++  
Sbjct: 158 HMTPREREVLALILKEYTTQEIADQLFVSIRTVETHRKNLLTKFGVKNVVGLVVKALQMG 217


>gi|283785659|ref|YP_003365524.1| response regulator [Citrobacter rodentium ICC168]
 gi|282949113|emb|CBG88720.1| response regulator [Citrobacter rodentium ICC168]
          Length = 218

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +   +C         A               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEANCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   V    P          
Sbjct: 47  AVDVVLMDMNMPGIGGLEATRKIARSTADI--------KVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEMVSAIRSVYTGQRYIASDIAQQMALSQI-------EPEKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 58/222 (26%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G +              +D  +     
Sbjct: 2   RVLVVDDHPLFREGLTIAIETMPDVEVVGEAGDGEAAVEAAGRLAPDIVVMDLHMPGTNG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D  R +                 L   +                 Y     +   I   
Sbjct: 62  IDATRRIVAEHPGI--------AVLVLTMLDGDDSVFAAMRAGARGYLLKGAERQEIARS 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     +        +       A              ELT RE E L  ++ G T+
Sbjct: 114 LRAVAAGEVVFSAAIASRV------LAWFATGGRSALAPFPELTDREREILDLVARGLTN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L +S  TV N+++++  K     R+ A+A A    +
Sbjct: 168 PAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAVARARDAGL 209


>gi|296138645|ref|YP_003645888.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026779|gb|ADG77549.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 25/240 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  +     S V     R   +  +            +                   
Sbjct: 4   RVFLVDDHGVFRSGVRAELAREATIEVVGEAGTVAEAVSGILESA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE---LFCPVFHTLPENITPPAG 125
                 D ++      D      L          +       L   V     + I     
Sbjct: 49  -----PDVVLLDVHMPDGGGVAVLRGVTDGAPRARLEKTPVFLALSVSDAAEDVIATIRA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y + T     +   +  +     +        +  L ++             +   
Sbjct: 104 GARGYVTKTISGPELADAVRRVADGDAVFSPRLAGFV--LDSFTGRSPVPEPALDPELDS 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A   ++
Sbjct: 162 LTPRELEVLRLLARGYTYREIAEDLFISVKTVETHASNVLRKTQQSNRNALTRWAHTRHL 221


>gi|182412651|ref|YP_001817717.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839865|gb|ACB74117.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 219

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IVL  +     + +  L  +   +  +                    G     LV  
Sbjct: 4   PLKIVLADDHALVRAGIRTLLEKLPGVTIVGEAGD---------------GRETVTLVHT 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +     FD    +A            R   L   +       +      
Sbjct: 49  FAPDIAIMDITMPGLNGFDATARIAREH--------PRTKVLILSMHTAEDYVLQALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       A +++ L  +      +           +       +  D        L
Sbjct: 101 ATGYLLKDAATAELQLALNAVRKGETYLSPSISK-----SVLARFRQQEQDPRAEPTKAL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T R  E +  I+EG+++ EIA +L +S  T+  +   +M +      +G + YA+R  ++
Sbjct: 156 TPRMREIVQLIAEGRSTKEIAFLLNLSVKTIETHRMHLMARLGLHDVAGVVRYALRTGLI 215


>gi|331007749|ref|ZP_08330873.1| DNA-binding response regulator [gamma proteobacterium IMCC1989]
 gi|330418433|gb|EGG92975.1| DNA-binding response regulator [gamma proteobacterium IMCC1989]
          Length = 206

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       ++      + +  +   +       ++   T              
Sbjct: 2   IKIILVDDHPLFREGIASRLNMHEGIDVVAEAENGKQLLEKLERCT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D +  +                 +   +       ++      
Sbjct: 48  -PDVVMMDISMPEINGMDALEIVKEK--------FPGVRVIMLSMHDDKEYIVSVIRSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +   G+    +    +              +    K   LT
Sbjct: 99  EGYLLKDISGEEMIAAIHKVHSGGKYFSGEVAEILV------------QENTADKGDILT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   L  IS G     IA  L IS  TV  +  +I +K    T SG + YA+ + +
Sbjct: 147 TREQLILRLISHGNNDKSIASQLDISARTVETHKRNIKQKLLIDTTSGLVRYAIEHRL 204


>gi|315650698|ref|ZP_07903754.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315487075|gb|EFU77401.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 217

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +       E   A    L      +E++ D I+       L   
Sbjct: 4   VLIADDQELIRESLKIILLSKPDIEVTDAVCDGLEVIRSVREKRPDIILLDIRMPRLDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                  + Y  ++    +    F              + Y      +  +   +  ++ 
Sbjct: 64  SCTKIIKEGYPDIKI---IILTTFDDDEYVFNALKYGASGYLLKGISMDSLIEAINTVYQ 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I  D   ++    +  A   ++  V       +T  E   +  +S+GK++ EIA  
Sbjct: 121 GQAMINPDIASKVLRFFSKLAVNNETIYVPAENIKMITKNEWTIIREVSKGKSNKEIAKD 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  S  TV NY+++I+ K   + R+    +A+   
Sbjct: 181 LSFSEGTVRNYLSNILDKLELRDRTQLAIWAIGRG 215


>gi|297626942|ref|YP_003688705.1| Two-component system, regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922707|emb|CBL57284.1| Two-component system, regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 219

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 69/224 (30%), Gaps = 8/224 (3%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +     +  + E   G +    +         +D  +   
Sbjct: 1   MTTVMLVDDQEMIRKGLRVIIDAYPGLDVVAEAGDGFTAVRRLDSVQVDVILMDLNMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + VR +  +   +   +L          F      +       N +         + 
Sbjct: 61  DGVEAVRRIREARGPEGPRIL------VLTTFDQDENVLAAMRAGANGFLGKGAGPDELA 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +      +  + +  +    +    +    D     +  LT RE+E +  + EG 
Sbjct: 115 EGIRRVAAGAHALSDNAIGALVSHVSDPHAVPPDPDKAKLFE-GLTPRELEVVRLVVEGL 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + EI   + IS  T   ++   M K   + R+  ++ AV+  I
Sbjct: 174 DNAEIGRRVFISPFTAKTHVNRAMAKVGARDRAQLVSLAVQAGI 217


>gi|322386644|ref|ZP_08060269.1| two component system response regulator [Streptococcus cristatus
           ATCC 51100]
 gi|321269317|gb|EFX52252.1| two component system response regulator [Streptococcus cristatus
           ATCC 51100]
          Length = 227

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 75/237 (31%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +    +  +  +        +++ +               
Sbjct: 2   IKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKLHRV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D I+       +   +      + Y        +    F       +      
Sbjct: 47  -----RPDVILMDIRMPVMDGVLCTKAVKEQYP---DAKIIILTTFDDDEFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  ++  G +I  +   ++  + +  A    +  V      +++
Sbjct: 99  SGYILKGVSTEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVSEENVEDMS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ EIA  L +S  TV NY++ I+ K   + R+    +AV+  
Sbjct: 159 RTEWKIIQQIGFGISNKEIAAKLYLSEGTVRNYLSGILSKLNLRDRTQLAIWAVQTG 215


>gi|291616972|ref|YP_003519714.1| UvrY [Pantoea ananatis LMG 20103]
 gi|291152002|gb|ADD76586.1| UvrY [Pantoea ananatis LMG 20103]
          Length = 219

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E   + +  +                      + A     G       R +
Sbjct: 2   ITVLLVDDHELVRAGIRRIL---------------EDIKGLVIAGEACCGEDAVKWCRAN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  QVDVILMDMNMPGIGGLEATRKIVRYNPDI--------KIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRSVNAGQRYIASDIAQQMALSQI-------EPQKAESPFSCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 282

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 72/223 (32%), Gaps = 13/223 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMA 91
           ++ +D        + A  E  G     L              L ++V SD     V    
Sbjct: 58  LLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQ 117

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             +K +     Q    +F        + I       + + S  FD   +   +  L  + 
Sbjct: 118 FLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLARQ 177

Query: 152 RIILRD--RLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKT 202
           +          ++  +      + +      G            T RE   L  +S+G  
Sbjct: 178 QASSDAGSESAKLQEIYQEIRALKEQIGQPSGIHTTPSPIKLDFTPREQSVLDLVSQGLM 237

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 238 NKEIAAQLKTSVRNVEKYVSRLFTKTGTNSRTELVRFALQHGL 280


>gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 211

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +     + +  +    +    +                    GA    L 
Sbjct: 1   MKPIRLIIADDHPVVRTGIIGMLAEHEEFTVLAEAAT---------------GAEAVALA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +        V  +     D +         L    + +  + +    
Sbjct: 46  RRLRPDVVLMDLRMPEMDGAAAVAQIRAEMPDVH--------VLVLTTYDSDEDILHAVE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +        ++       +                   +  
Sbjct: 98  AGATGYLLKDTTREDLFRAIRAAAAGQPLLAPSVAARLMARLNQ------------PRQE 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  +++G ++ EIA  L IS+ TV +++  I  K     R+ A+  A+   
Sbjct: 146 PLTPREIDVLRLVAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERG 205

Query: 245 IV 246
           I+
Sbjct: 206 II 207


>gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
 gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
          Length = 202

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     + +++ +D +              G+               LD  +  
Sbjct: 1   MIVDDHPLMRRGIRQLLEMDHSFDVVAEAN-----CGSEAITEAAKCQPDVILLDLNMKG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D ++ +     D           +   V     +         + Y     +   +
Sbjct: 56  MSGLDTLKALRHDGID--------ARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEIL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +   +            A    S         ELT RE++ L  ++ G
Sbjct: 108 LENIRRAAHGENVFSNE-----------VAQYLSSRHEEINPFAELTERELDVLQEVARG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++ ++A  L IS  TV  +I +++RK   ++R  A    + N
Sbjct: 157 MSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAATIMFLEN 199


>gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 65/221 (29%), Gaps = 14/221 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + E   G     L R        +D  +     
Sbjct: 22  RVLLADDQAMVRTGFRYMLAAEDGVEVVGEAGDGLEAVRLARELRPDVVLMDIRMPGVDG 81

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V      +    F           G    +       A +   
Sbjct: 82  LEATRRLAGPG------VADPLRVVVVTTFDLDEYVHAAITGGAVGFLLKDAGPALLVEA 135

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +          F +       D  LT RE++ +  ++ G T+
Sbjct: 136 VRAAARGDALVSPRVTVRL-------LRHFAAAPRSAPGDGGLTVRELDIVRAVARGLTN 188

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E+A  L ++ +TV  ++AS+  K   + R    A+A RN 
Sbjct: 189 TEVAGELFVTVSTVKTHLASVQAKLGARNRVEVAAWAYRNG 229


>gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 205

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 25/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +   P     L  +  L+                G     ++         +D  
Sbjct: 1   MRVIIIDDHPLVRKGLELVASLEEDFEICGFA-----ANGLEAMEVLEKHSPDVALVDLR 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +   D++                    +    + T  E     A   + Y       
Sbjct: 56  LPGEHGLDIIEKARSINST--------CKYIVLTSYATKEEIKQAMALEVDGYILKETLP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + ++    +           ++  +             K  ELT RE+E L ++
Sbjct: 108 EELITSVRMIHKGRKYFDP-------VIVQHALEEKNE-----DKLSELTTREMEVLKFL 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S G  + +IA  L IS +TV  ++  I+ K   + R+ A  Y V   +
Sbjct: 156 SRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRTQAALYGVSQAL 203


>gi|328887358|emb|CCA60597.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 66/241 (27%), Gaps = 27/241 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +VL  +     + +  +   +  L  +                    GA    +   
Sbjct: 9   PVRVVLADDQPLVRTALRMVIGDTADLVVVGEAAD---------------GAEAVRVAAE 53

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +                 +    F             
Sbjct: 54  TGADVVVIDLRMPGTDGIEATRLITEGPT--------GARVVVLTTFDDDDHVYGALHAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
            + +      +  I   + ++     +I       +        +  ++      +  E 
Sbjct: 106 ASGFLVKDMALDDILAAVRVVAAGDALIAPGVTRRLI---KEFTDRPRTAPAVPRRRAEG 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E LT +  G ++ E+A  L IS  T   Y+  ++ K   + R   +  A    +
Sbjct: 163 ITDREREVLTLVGRGLSNTEVAAELHISVATAKTYVTRLLAKLNARDRVQLVIIAYEAGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|258651012|ref|YP_003200168.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554237|gb|ACV77179.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 222

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 64/218 (29%), Gaps = 15/218 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       L   +     +  + E         +V     Q   LD  +SS    + + 
Sbjct: 19  DDHAIVRHGLRSILEREPDLRVVGEAATIEAAKAVVGQARPQIVVLDLKLSSGSDTEGLD 78

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A    +           L    F      +         Y     D + +   +  + 
Sbjct: 79  LCAALVAEHPD-----LGVLVLTTFIDDHLVLAAIHNGARGYVVKDVDTSALIRAIRDIS 133

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G          +                    D +LT RE E L  +S G ++ +I  
Sbjct: 134 RGGSAFDARSAAAMVRGLHA---------GPVDADKKLTSREQEVLELLSRGMSNVQIGK 184

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  ++ +I+RK     R+ A+  A +  ++
Sbjct: 185 KLFISDTTVKFHVGNILRKLGVSRRAEAVHLAGKMGLI 222


>gi|212634641|ref|YP_002311166.1| nitrate/nitrite DNA-binding response regulator [Shewanella
           piezotolerans WP3]
 gi|212556125|gb|ACJ28579.1| Nitrate/nitrite DNA-binding response regulator, putative
           [Shewanella piezotolerans WP3]
          Length = 206

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       + +  +    +  +   D        +  +               
Sbjct: 2   IRVLLVDDHPLFREGLRYRLSLDSDIEVLAEADNGQQALEILNKM--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L+  +   E             +   +       +       
Sbjct: 47  PVDLVLTDINMPQMDGMYLLELIKEQELS--------CKVVMLSMHDNKEYIMATMRYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R    D +  +            S ++  GK   +T
Sbjct: 99  DGYILKDVPGKELIEAIKKVAAGKRYFSADVINTL------------SQELASGKQALVT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   L  IS G  +  IA  + +S  TV  +  +I +K    + +G + YA+ + +
Sbjct: 147 QREQLVLRLISLGMNNKRIAQEMDVSVRTVETHKRNIKQKLMIDSTAGLVRYAIDHGL 204


>gi|223938200|ref|ZP_03630096.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893072|gb|EEF59537.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 224

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q++ ++L  +       +  L   +  +  +                    G     L 
Sbjct: 1   MQKITVLLADDHIIVRQGLRALLAAAGDVEVVGEAGD---------------GREAVELT 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  +      +  R +  ++       ++         +           
Sbjct: 46  KKLSPQVVVMDLAMPKLNGLEATRQIVKNK-----PGIKVVVLSS---YSDQEYVQKVME 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  ++             +  L                   
Sbjct: 98  AGALGYLVKQSAADDLLTAIREVYKGNNFFSPAIAKGLSELKREAFTN---GHAFRESGV 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+EG+ + +IA  L IS  TV  +   +M K      +    YA+   
Sbjct: 155 HLTAREREVLQLIAEGRANKQIADDLAISIKTVEKHRQQVMNKLNIHDVASLTRYAISKG 214

Query: 245 IV 246
           +V
Sbjct: 215 MV 216


>gi|290958801|ref|YP_003489983.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260648327|emb|CBG71438.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 59/219 (26%), Gaps = 11/219 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    +  + E   G     L R         D  +     
Sbjct: 4   RVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGREAVRLARELRPDVCLFDIRMPVLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A  +      V+          F                +         +   
Sbjct: 64  LEATRLVAGPDVADPLAVV------VITTFDLDEYVYGALRAGARGFLLKDTGPDLLAQA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +            +          +T RE + L  ++ G T+
Sbjct: 118 VRSASEGEALIAPSVTVRL----LQAFADVPAGRPVAQPVSPVTAREEQVLLSVARGLTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EIA  L IS +TV  ++AS+M K   + R     +A  
Sbjct: 174 TEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYE 212


>gi|239931777|ref|ZP_04688730.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 182

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 10/184 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R        LD  +       + + +  +              L         + +   
Sbjct: 4   ARSTAPDVLVLDLNLPGKPGVRVCKEVVAAN--------PALRVLVLSASGEHADVLEAV 55

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-- 181
                 Y   +     ++  +        +        +       A+            
Sbjct: 56  KSGATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAGPAQGDDGS 115

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE E L  +++G +  +IA  L IS  TV N++ + + K     R   + YA+
Sbjct: 116 KAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAI 175

Query: 242 RNNI 245
              +
Sbjct: 176 ERGL 179


>gi|284032715|ref|YP_003382646.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812008|gb|ADB33847.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ +   +D +  ++          R+   T              
Sbjct: 3   IRVALVDDQELVRVGLAMVVDATDDIQIVLQAADGAEAVARLAETT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   E             +    F              
Sbjct: 49  -VDVVLMDVQMPRLDGVEATRLVTARENAP--------KVIVLTTFDLDEYAFAGLRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +           ++          LT
Sbjct: 100 SGFLLKDASADEVLHAIRAVHAGDSVLAPSTTRRMLDHLPTA----RAGHEASPLLQRLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ G ++ E A  L +S  TV  ++A ++ K   + R  A+ +A  N +V
Sbjct: 156 ARERDVLLEIAHGHSNAETAQRLFLSEATVKTHVAHLLAKLEVRDRVQAVIFAYENGLV 214


>gi|21223170|ref|NP_628949.1| two-component system DNA-binding response regulator [Streptomyces
           coelicolor A3(2)]
 gi|8218193|emb|CAB92655.1| putative two-component system DNA-binding response regulator
           [Streptomyces coelicolor A3(2)]
          Length = 251

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +VL  +     + V     +          +  V        + +        ++  
Sbjct: 34  RVRVVLVDDHRMFRTGVQAEIGQ--------TAETGVEVVGEAADVDQA-----VTVITA 80

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   LD  +      +++R  A    D    V      L   V     + I    G 
Sbjct: 81  TRPEVVLLDVHLPGGGGVEVLRRCAPLMSDAERPV----RFLALSVSDAAEDVIGVIRGG 136

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F S D     +   
Sbjct: 137 ARGYVTKTITGTDLVDSVFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLD 189

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 190 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARR 249

Query: 245 IV 246
           +V
Sbjct: 250 LV 251


>gi|313499754|gb|ADR61120.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           BIRD-1]
          Length = 219

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L         +   D       ++  L                
Sbjct: 4   RLLLVDDHSLIRAGVRALVCDIPGYDVVGEADDGNQLLDQVRTLA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +  S              L   +       +    G  +
Sbjct: 49  PDIILLDISMRSTSGLDALTQLRASGST--------CKVLILSMHTDPDLIMRALEGGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +    R +          +        +       +   LT 
Sbjct: 101 GYLLKDTSANELEQALGAVRHGERYLSPAIA---HTVINQALRHTQQGKPSADERHNLTS 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus]
          Length = 222

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 62/222 (27%), Gaps = 11/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       +   V     M  + E   G     + R        +D  +     
Sbjct: 4   RLLIADDQEMVRRGIRRIVESQPDMEVVGEAANGVDAVEMGRTLKPDVALVDIRMPRMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R +A                +    F              + +         +   
Sbjct: 64  LEVTRLLA------DPAAANPVRVVVVTTFDLDEYVYPALRFGASGFLLKRSGPTLLVEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +            +      +D  LT REVE    ++EGKT+
Sbjct: 118 VRAAMAGDSLISPSITVRL----LQHVTGPTTGRRPRRRDSVLTEREVEIAGKVAEGKTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L IS  TV  ++ASI RK   + R G    A     
Sbjct: 174 SDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRAWELGY 215


>gi|303238514|ref|ZP_07325048.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593912|gb|EFL63626.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     + +L  +   +  +               +               
Sbjct: 2   IKVIIADDQEIIREGIKYLIEQDPEIEVLGVAGNGSEALELCETI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +     D           +    F+             
Sbjct: 47  KPDVVLMDIVMPEVSGVESTLLIKEKYPDI--------KVIILTTFNHDENISKALENGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         + + +       R++ +D    I    +       S          LT
Sbjct: 99  DGYILKDIKPKELILAVKSAASGLRVLHKDAFPSIVKKVSD--QRKMSLIQKDELTNLLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE+E +  + +GK + +IA  L IS  TV N I+ I++K   + R     YAV+N
Sbjct: 157 PREIEIINLVVDGKDNRDIANSLFISEGTVRNTISLILKKLNLRDRIQLAVYAVKN 212


>gi|312199753|ref|YP_004019814.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231089|gb|ADP83944.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 246

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + ++L  +                 +  +   D                GAS   L 
Sbjct: 16  ATPIRVLLADDQPLIRLGFRMFLRAEPGIEVVGEADD---------------GASAVRLA 60

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      +    +  +              L    F           
Sbjct: 61  RQLRPDVVFMDVRMPGMDGIEATAAIVAARLP--------TRVLILTTFDLDQYVYAGLR 112

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       A +      +     +I       +           +  D       
Sbjct: 113 AGASGFLLKDARPAELAAAAHAVAAGEAVIAPSATRRLLETFTPLLPTPEQADARAATLA 172

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  +++ +T+ EIA  L +S  TV  ++  I+ K   + R   +A+A    
Sbjct: 173 ALTDREHDVLLLVAQARTNREIADELHVSEATVKVHVGRILAKLGLRDRVQTVAFAYETG 232

Query: 245 IV 246
           ++
Sbjct: 233 LI 234


>gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 265

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 69/233 (29%), Gaps = 19/233 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK---LDSIVSSDWPFDLVR 88
               M     T      +    +  G +  +          +   L  ++   WP +  R
Sbjct: 33  FTEAMRGCRTTEEVNHSLMIFLQRYGVTSLIAGMIPPSNSSRREQLSYVLLDGWPEEWKR 92

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRYCSLTF 135
                        +            +                       +         
Sbjct: 93  RYFSLGYLHRDPAIHLVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQLRAGVTFSFP 152

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVEC 193
            +     G  L+  +   +    L+ +  +AA+      +    V    +  L+ R+ E 
Sbjct: 153 TLESKTFGF-LVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVHLSRRQREV 211

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + W SEG T+DEIA  L +S +T + ++ ++  +        A+A A+R  ++
Sbjct: 212 VAWASEGLTADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEALRLGLI 264


>gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300075725|gb|ADJ65124.1| nitrate/nitrite response regulator transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 71/238 (29%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  L  R   +  +      +    R   L               
Sbjct: 3   IRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ +           L     L   V     +  T      
Sbjct: 48  RPDVVLMDLNMPGLSGLEAMQLIVQD--------LPETAVLMLSVSEEADDLTTALHNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +        +I      ++ +     A              +LT
Sbjct: 100 RGYLLKNIEADYLVQSIKRAAAGEPVISESMTAKLVMQLRAGAGNPA--ASAAEPTDKLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   +  I+ G+++ EIA  L ++ +TV  ++ +++RK    +R     YAV + +
Sbjct: 158 ARERATMVCIARGQSNKEIARSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215


>gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 70/230 (30%), Gaps = 14/230 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R   +         +A M+  +  +  T +  ++ +                   L
Sbjct: 11  PDSIRVFLLDDHELVRRGVAEMLSAEPDIDVTGQAGSVAQ-----TVAAAEAARPDVALL 65

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      ++ R +                 L    F                Y    
Sbjct: 66  DVRLPDGSGIEVCRELKSRMPGLGC--------LMLTSFSDDDALFGAIMAGAAGYVLKD 117

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              + +   +  +   G ++      ++   L           +    K   LT  E   
Sbjct: 118 IRGSALVDAVRTVARGGSLLDPTATEKLLSRLRVGIVPGEADREAAASKLATLTVSEKRI 177

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  I+EG T+ +I   L ++  TV NYI  I+ K A + R+ A A+AVR+
Sbjct: 178 LELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQRRTQAAAFAVRH 227


>gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
 gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1]
          Length = 213

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 19/211 (9%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           E  G   F  + +   +  + D++  + +P   V     +  D+   V+ R      P  
Sbjct: 2   EQYGFPCFAYLSF-APRGDEDDALAITTYPSAWVEQYRANRYDRIDPVIARSVATTLPFA 60

Query: 114 HTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-- 159
            +                      + +       D       L L   + R     ++  
Sbjct: 61  WSTDQFDALNNRQKWFLEEASEFEIRHGVTIPIHDRQGKVATLTLAACEARSAFEAQISK 120

Query: 160 --WEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRN 215
              E+ L+A Y     +             LT RE  CL W + GK++ + A I+ +SR 
Sbjct: 121 YRHELHLIAIYLYARLRDVTPTPASPLRPCLTQRERICLQWAARGKSALDTAEIINVSRR 180

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  +  +  RK    T   A+A  +  +I+
Sbjct: 181 TVVFHTQNAKRKLGVATVQQAVAKGLAYDII 211


>gi|39934561|ref|NP_946837.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39648410|emb|CAE26931.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 61/242 (25%), Gaps = 29/242 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ + +  +     S +  L      L  +       +   R   L             
Sbjct: 7   SRLRVFIADDHPVVLSGMKALVAGDPGLEVVGEASDGPNALRRATEL------------- 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      ++ R    +              L   V             
Sbjct: 54  --KPDVAVLDLSMPGLNGIEVARKFLAT--------CPDCRVLVLTVHEDGAYLRQLLDL 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDF 184
               Y         +  G+  +   G  +        IG    +  N             
Sbjct: 104 GVAGYVLKRSATEELIRGIHAVGSGGIYLDPAIAGRAIGRTTPHLHN-----GDEHNAVS 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L   + G ++  IA  L I   +V  Y A  M K     R   + +A+   
Sbjct: 159 ELSTREIEVLRLAAIGHSNKTIAAKLQIGAKSVETYKARGMAKLGFHNRVEVVRFALSMG 218

Query: 245 IV 246
            +
Sbjct: 219 WL 220


>gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
 gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
 gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 28/249 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + +  + E   + V            +  L  +     +   +          +
Sbjct: 5   ETAKIRVAMVDDHEMFRAGV------------IATLRDSFDIVGQAADV-----PGSVAM 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  V           +A S       V    +    P      +  +  
Sbjct: 48  IAQTKPQVVLLDVHVPGGEGGGGAEILAKSRPYSPTTVFLALSVSDAP-----QDVGSVI 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYD 177
                 Y + T   A +   +  +     +        +         A        +  
Sbjct: 103 RAGAQGYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSTFQGVPAAGSDGGADGAAR 162

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
 gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM
           4582]
          Length = 245

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 73/228 (32%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +   +   +  + S++P + V     +       V+  
Sbjct: 15  IKSYLDRKLKMYGDIKYSYLILNK--KNPAEINIISNYPDEWVNIYKENNYQHIDPVVII 72

Query: 105 PTELFCPVFHTLPENI------------TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P        I            +    + N +  +  D       L ++  + +
Sbjct: 73  AFNKIAPFSWDENLAINSSLKLSKIFNLSRKYNIINGFTFVLHDPNNNLAMLSIMLDEEK 132

Query: 153 IILRDRLWE-----IGLLAAYQANMFKSYDVHWGKDFE---------LTGREVECLTWIS 198
               +   E     + +L     +   S      ++ +          + RE E L W S
Sbjct: 133 SNEIEENIESNKEKLQMLLISAHDKLISLYREMSQNKDEKIYNDKEIFSHRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+ILGI   TV  +I ++++K        AI   +   ++
Sbjct: 193 MGKTYQEIALILGIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIELQLI 240


>gi|262195078|ref|YP_003266287.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262078425|gb|ACY14394.1| two component transcriptional regulator, LuxR family [Haliangium
           ochraceum DSM 14365]
          Length = 212

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       +   +S +  +  + E   GA    +V+        LD  +      +  
Sbjct: 7   ADDHALLREGMRRMLSQSELIEVVGEASNGAEAVEVVKEKAPDVLLLDITMPVKDGIEAT 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +     +           L   +       +       N + S    +  +   +  +
Sbjct: 67  ADILALNVN--------TKILILSMHADEQYALRTLRAGANGFISKGARLEELLKAITDV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +          +A   A      D        L+ RE + +T +++G T+ EIA
Sbjct: 119 HEGQRYLPDK-------IATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTNREIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +L IS  TV+ + + +++K   +  S    +A+++  +
Sbjct: 172 GVLQISVKTVDTHRSHVLKKLELRNNSDITRFAIQHGYI 210


>gi|223934493|ref|ZP_03626414.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896956|gb|EEF63396.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 212

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 58/213 (27%), Gaps = 15/213 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            D + R                +    G      +         +D  +      + +R 
Sbjct: 15  DDAVLRRSLARLVGETYGTQNVIACASGEEALQKLPPAKPHVVLMDLNLPQMPGTECIRR 74

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +           L     +   V+              + Y     +   +   +     
Sbjct: 75  LKEL--------LPTTQVIVLTVYEDSEHIFRALKSGASGYLLKRSEPEEVMEAITTARE 126

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  +           A    + F            LT RE E L  +++G  + EIA  
Sbjct: 127 GGAPMSSQV-------AHRVVHSFHEPASPTVDTAALTDREKEILDLLTQGFANKEIADK 179

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + IS  TV  ++  I  K   ++RS AI   ++
Sbjct: 180 MQISVTTVRTHLRHIYEKLHIRSRSEAIVKYLK 212


>gi|22126469|ref|NP_669892.1| response regulator [Yersinia pestis KIM 10]
 gi|45441287|ref|NP_992826.1| GerR family transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51595939|ref|YP_070130.1| GerR family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806869|ref|YP_650785.1| GerR family transcriptional regulator [Yersinia pestis Antiqua]
 gi|108812565|ref|YP_648332.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|145598686|ref|YP_001162762.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149366494|ref|ZP_01888528.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153949615|ref|YP_001401371.1| LuxR family transcrptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162418347|ref|YP_001606184.1| LuxR family DNA-binding response regulator [Yersinia pestis Angola]
 gi|165924363|ref|ZP_02220195.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940157|ref|ZP_02228689.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011786|ref|ZP_02232684.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211236|ref|ZP_02237271.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400261|ref|ZP_02305774.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421829|ref|ZP_02313582.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167469680|ref|ZP_02334384.1| DNA-binding response regulator, LuxR family protein [Yersinia
           pestis FV-1]
 gi|170024724|ref|YP_001721229.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186895033|ref|YP_001872145.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218928714|ref|YP_002346589.1| putative GerR family transcriptional regulator [Yersinia pestis
           CO92]
 gi|229841563|ref|ZP_04461722.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843674|ref|ZP_04463817.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229894221|ref|ZP_04509404.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|229902951|ref|ZP_04518068.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|270486738|ref|ZP_06203812.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294503549|ref|YP_003567611.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|21959462|gb|AAM86143.1|AE013860_9 response regulator [Yersinia pestis KIM 10]
 gi|45436147|gb|AAS61703.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51589221|emb|CAH20842.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776213|gb|ABG18732.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Nepal516]
 gi|108778782|gb|ABG12840.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115347325|emb|CAL20221.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|145210382|gb|ABP39789.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149290868|gb|EDM40943.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152961110|gb|ABS48571.1| DNA-binding response regulator, LuxR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351162|gb|ABX85110.1| DNA-binding response regulator, LuxR family [Yersinia pestis
           Angola]
 gi|165911903|gb|EDR30548.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923423|gb|EDR40555.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989251|gb|EDR41552.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207007|gb|EDR51487.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960314|gb|EDR56335.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050210|gb|EDR61618.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|169751258|gb|ACA68776.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186698059|gb|ACC88688.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680398|gb|EEO76497.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|229689282|gb|EEO81345.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229697929|gb|EEO87976.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229703619|gb|EEO90635.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Pestoides A]
 gi|262361591|gb|ACY58312.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis D106004]
 gi|270335242|gb|EFA46019.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294354008|gb|ADE64349.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis Z176003]
 gi|320015551|gb|ADV99122.1| putative GerR-family transcriptional regulatory protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 209

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 70/219 (31%), Gaps = 22/219 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--DSIVSSDWPFDLV 87
            D +         +S    +  + E  G +                 D  +  +    L+
Sbjct: 8   DDHIVVRSGFAQLLSLEEDIRIIGE-YGCAAEAWENLPKTDVHVAVIDISMPDESGLSLL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +           +     +   ++ T     +      + Y +   D A +   L  +
Sbjct: 67  KRLRQQ--------IPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCDPAALVQALRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  D L  +           +       K   LT RE E    + +G +   +A
Sbjct: 119 NGGGLYLCTDALRAL-----------RQMPQQPSKLTILTPREKEIFQLLVKGISVKALA 167

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 168 EQLSLSHKTVHVHRANILSKLNCETTIELVHFALQHQLL 206


>gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +     +    E   GA+   LVR        +D  +       
Sbjct: 2   LLVDDEPLVRAGLRAVLEAQPDLEVCGEAGDGAAVVPLVRALRPDVVAMDVRMPLMDGIG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +              P  L    F              + +       A I   + 
Sbjct: 62  ATRAVLAM-------AGPLPKILVVTTFENDAYVYDALRAGADGFLLKRARPAEIVHAVR 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           ++     ++    +  +           +           LTGRE E L  ++ G ++ E
Sbjct: 115 VVAAGDSLLFPAAVRRLA---------DQHGGRAPAPFPGLTGREGEVLRLMARGLSNAE 165

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 166 IAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 206


>gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
 gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 19/216 (8%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  + +     H      +         +    +  D                L    
Sbjct: 18  EFLRQVCDKYEMDHAAYAGMNPAAGTIHGHV---TYGDDWKNHYQEQGLHLIDPTLHMSQ 74

Query: 107 ELFCPVFHTLPEN---------ITPPAGMDN-RYCSLTFDVARIRIGLMLLFP----KGR 152
               PV  +  E               G+ +                L         + +
Sbjct: 75  RSIAPVDWSRLERGKDFQRVFRDAHDFGIPDQGITIPVRGPYGDIGLLSATRGCSRDEWK 134

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVIL 210
            ++ + + ++  LA +  +   + D      +   L+ RE+E L W + GK+  +I  IL
Sbjct: 135 KLVPNVIKDLQSLAVHIHDNVMTSDTISRMLYHPTLSSRELEILQWAAAGKSQQDIGDIL 194

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  ++ S   K    T   A+  A+   ++
Sbjct: 195 SISHRTVEVHLRSSREKLNALTTPQAVGRAIGIGLI 230


>gi|196228431|ref|ZP_03127298.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196227834|gb|EDY22337.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 61/233 (26%), Gaps = 27/233 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ +      L      +        M                   
Sbjct: 20  RVLLVDDHAVVRKGLAAILAEEPDLTVCGEAESAPQALEAMRRF---------------D 64

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L++ M             +   L   V       +        
Sbjct: 65  PDVALLDISMPGTNGIELIKAMLAER--------PKLPILMLSVHDESLYALRALRAGAK 116

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y      V+ +   L  +      +       +   A    N             +L+ 
Sbjct: 117 GYLMKAEAVSEVFAALRKVLNGEIYVSPRFGERLVFQAIQSQNGSVLGSPVD----KLSD 172

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE+E L  + +G  + EIA  L +S  T+  + A I  K   K     + +A+
Sbjct: 173 RELEVLHHLGKGHGTREIAAALNLSVKTIETHRAHIKEKLGVKDSDEMVRFAL 225


>gi|317057939|gb|ADU90664.1| putative LuxR family two component transcription regulator
           [Collimonas sp. MPS11E8]
          Length = 210

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  L T  + +               + A                
Sbjct: 2   IRVLIADDHEIMREGLKQLFTFGNEIEVAAEASNGGQVLDALRA---------------G 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD ++      +L++ +   + +    VL         +           A   
Sbjct: 47  GIDLVLLDMVMPGISGVNLIQRIRAHDANP--PVLVLTMHNQPSI------ARRVLAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +   GR I  +   ++   A        S          L+
Sbjct: 99  SGYLTKDNKPETLIAAIRKVVAGGRFIDPEMAEQMVFEA--------SSSDQRPPHELLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  +  G + +E A  L IS  TV+ + A +M+K   +     + YAV  N++
Sbjct: 151 DREFHILRLLVRGNSVNEAAEELSISNKTVSTHKARLMQKMNFQNNVELVRYAVTYNLI 209


>gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617]
          Length = 240

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 13/215 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            T  +      +    + L         +  + + S++P D +      +  +   VL+ 
Sbjct: 26  ITRIIEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPEDWLEHYFREDFYQLDPVLKM 85

Query: 105 PTELFCPVFHTLPE--------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RI 153
            +                          G+ +          R      +   K      
Sbjct: 86  CSSPGKIWLWDDEAMSSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSVSTAKSLKTIE 145

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILG 211
           +      +I  ++          +         +L+ RE+E L W +EGKTS EI++IL 
Sbjct: 146 LTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGKTSAEISLILS 205

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS NTVN +   + ++     ++   +YA    ++
Sbjct: 206 ISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 218

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 6/219 (2%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD--L 86
             D    ++ +D    W   +       G +            ++   +  +    D  L
Sbjct: 2   ADDQPTTVMVVDDHPIWRDAVARDLADEGFAVVATADGVAAARRRAAVVKPAVVVMDMRL 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     +   V      L         + +         Y   +   A +   +  
Sbjct: 62  TDGGGAQATAEVLAVSPASRVLVLSASDERDDVLEAVKAGATGYLVKSASKAELSAAVRA 121

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +        +  L   +                LT RE E L  +++G T+ +I
Sbjct: 122 TADGRAVFTP----GLAGLVLGEYRRIAQRPDTGDSAPTLTERETEVLRHVAKGLTAKQI 177

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 178 AARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216


>gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 200

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 50/188 (26%), Gaps = 10/188 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G     L R         D  +      D  R +A         V+          F 
Sbjct: 15  ADGREAVRLARELRPDVCLFDIRMPVLDGLDATRLVAGPGVADPLAVV------VITTFD 68

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                          +         +   +        +I       +            
Sbjct: 69  LDEYVYGALRAGARGFLLKDTGPDLLAQAVRSAADGEALIAPSVTVRL----LQAFADLP 124

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +          +T RE + L  ++ G T+ EIA  L IS +TV  ++AS+M K   + R 
Sbjct: 125 AGRPVTQPVSPVTAREEQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRV 184

Query: 235 GAIAYAVR 242
               +A  
Sbjct: 185 EIAMWAYE 192


>gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 67/237 (28%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     +  L T    +  +           R+ AL               
Sbjct: 24  IRVFLLDDHEVVRRGLRDLLTDEPDVEVVGEAGRADEAVARILAL--------------- 68

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                +    V      D        +       +          F       T      
Sbjct: 69  -----QPHVAVLDARLEDGSGIEVCRQVRSSDPRIACL---ILTSFDDEEALFTAIMAGA 120

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++       + +         +       +   LT
Sbjct: 121 AGYVLKQIRGTALVDAVRQVAAGKSLLDPAVTPRVLV-------RLREGPAEDERLSGLT 173

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A R N
Sbjct: 174 DQERRILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLGLESRTQAAVFATRLN 230


>gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 217

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 15/216 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +       G   F  +     +  +++      +P         +E D      + 
Sbjct: 1   MFEILRRYFAEFGFEAFAYMVPSKTEPGRIEMDAFG-FPDAWAETYRSAEMDTIDPFPRY 59

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLML-LFPKG 151
                 P+  T                     G+ +     TF + +      +      
Sbjct: 60  VARSGRPLRLTEISAQAQSKEQKAFLEQAREHGITDGLIIPTFGIRQNLGVFAIGQVKDL 119

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVIL 210
           +++ R  ++ +  +A       +            L+ RE E L WI+ GKT+ EIA IL
Sbjct: 120 KVLERASVFALQAVAQAAHTQMEMLASRADGLRTNLSNRETEILHWIALGKTNSEIATIL 179

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GI   TV  YI  +  K   K RS A   A+R  I+
Sbjct: 180 GIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGII 215


>gi|126452622|ref|YP_001066938.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106a]
 gi|242317399|ref|ZP_04816415.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106b]
 gi|126226264|gb|ABN89804.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106a]
 gi|242140638|gb|EES27040.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1106b]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 67/246 (27%), Gaps = 31/246 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S V  L  R      +                    G       +  
Sbjct: 3   IRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASD---------------GVEGVKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           +     +   V     E  T      
Sbjct: 48  QPDVILLDLNMPGLSGLETLQLLVQD--------VPSAHVVILTVSEDAEELTTALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW--------EIGLLAAYQANMFKSYDVH 179
             +     D   +  G+        +I               +      QA         
Sbjct: 100 CGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPVPAARPAQAAALAPAAHA 159

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     Y
Sbjct: 160 SVDPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVY 219

Query: 240 AVRNNI 245
           AV   +
Sbjct: 220 AVERGL 225


>gi|24375469|ref|NP_719512.1| DNA-binding nitrate/nitrite response regulator [Shewanella
           oneidensis MR-1]
 gi|24350319|gb|AAN56956.1|AE015828_12 DNA-binding nitrate/nitrite response regulator [Shewanella
           oneidensis MR-1]
          Length = 209

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   S    + +     G      V  D      LD  + 
Sbjct: 7   VLVVDDHPLLRKGICQLITSDPDFSLFGEVGS-----GLDALSSVATDEPDIVLLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  M                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNAMRQEGVT--------SRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I  +        A Y     K+          LT RE++ L  ++E
Sbjct: 114 LLDKLKNTMSGHRVISEEV-------AEYLYE-LKNAADEQEWVSSLTPRELQILQQLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|53719924|ref|YP_108910.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|53724171|ref|YP_103355.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           23344]
 gi|76809195|ref|YP_334149.1| DNA-binding response regulator NarL [Burkholderia pseudomallei
           1710b]
 gi|121601164|ref|YP_993557.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1]
 gi|124386217|ref|YP_001029014.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10229]
 gi|126440837|ref|YP_001059655.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 668]
 gi|126449502|ref|YP_001081065.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10247]
 gi|134277548|ref|ZP_01764263.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305]
 gi|167003441|ref|ZP_02269227.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20]
 gi|217420735|ref|ZP_03452240.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 576]
 gi|226195464|ref|ZP_03791052.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813049|ref|YP_002897500.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Burkholderia pseudomallei MSHR346]
 gi|238561643|ref|ZP_00441776.2| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse
           4]
 gi|254177953|ref|ZP_04884608.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           10399]
 gi|254184342|ref|ZP_04890932.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1655]
 gi|254191372|ref|ZP_04897876.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195930|ref|ZP_04902356.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei S13]
 gi|254200313|ref|ZP_04906679.1| DNA-binding response regulator NarL [Burkholderia mallei FMH]
 gi|254261045|ref|ZP_04952099.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1710a]
 gi|254357939|ref|ZP_04974212.1| DNA-binding response regulator NarL [Burkholderia mallei
           2002721280]
 gi|52210338|emb|CAH36317.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|52427594|gb|AAU48187.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           23344]
 gi|76578648|gb|ABA48123.1| DNA-binding response regulator NarL [Burkholderia pseudomallei
           1710b]
 gi|121229974|gb|ABM52492.1| DNA-binding response regulator NarL [Burkholderia mallei SAVP1]
 gi|124294237|gb|ABN03506.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10229]
 gi|126220330|gb|ABN83836.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 668]
 gi|126242372|gb|ABO05465.1| DNA-binding response regulator NarL [Burkholderia mallei NCTC
           10247]
 gi|134251198|gb|EBA51277.1| DNA-binding response regulator NarL [Burkholderia pseudomallei 305]
 gi|147749909|gb|EDK56983.1| DNA-binding response regulator NarL [Burkholderia mallei FMH]
 gi|148027066|gb|EDK85087.1| DNA-binding response regulator NarL [Burkholderia mallei
           2002721280]
 gi|157939044|gb|EDO94714.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698992|gb|EDP88962.1| DNA-binding response regulator NarL [Burkholderia mallei ATCC
           10399]
 gi|169652675|gb|EDS85368.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei S13]
 gi|184214873|gb|EDU11916.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1655]
 gi|217396147|gb|EEC36164.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 576]
 gi|225932424|gb|EEH28423.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei Pakistan 9]
 gi|237505451|gb|ACQ97769.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Burkholderia pseudomallei MSHR346]
 gi|238524266|gb|EEP87700.1| DNA-binding response regulator NarL [Burkholderia mallei GB8 horse
           4]
 gi|243061043|gb|EES43229.1| DNA-binding response regulator NarL [Burkholderia mallei PRL-20]
 gi|254219734|gb|EET09118.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           pseudomallei 1710a]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 31/246 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S V  L  R      +                    G       +  
Sbjct: 3   IRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASD---------------GVEGVKRAKQH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           +     +   V     E  T      
Sbjct: 48  QPDVILLDLNMPGLSGLETLQLLVQD--------VPSAHVVILTVSEDAEELTTALRDGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW--------EIGLLAAYQANMFKSYDVH 179
             +     D   +  G+        +I               +       A         
Sbjct: 100 CGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPVPAARPAPAAALAPAAHA 159

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     Y
Sbjct: 160 SVDPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVY 219

Query: 240 AVRNNI 245
           AV   +
Sbjct: 220 AVERGL 225


>gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
 gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 17/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   + L  ++             +  E +      L R        LD  + 
Sbjct: 7   VLLVDDHPLFREGLRSILSGLAAYGVVGEAGSAREAME-----LARSRTPDVVVLDIGLP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +++R +          V+         +   L             Y       A 
Sbjct: 62  DANGIEVIRQLRTLAVCPRILVV--------SMHTRLDLVAESLRAGALGYVLKDSAAAN 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +  GL  +    R +    + ++ L L  Y     +  D  +     LT RE + L  ++
Sbjct: 114 LLHGLEAVSRGDRYLDGSIVPQLLLKLDEYAVRRSRPADPAYD---TLTRREQQILRLLA 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG+++  IA  L ISR TV N+ A+I  K    + +  + YAVR  ++
Sbjct: 171 EGRSAGAIAADLYISRKTVENHRANIFGKLGLTSMAELVHYAVRLGLI 218


>gi|258626430|ref|ZP_05721277.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|258581482|gb|EEW06384.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
          Length = 214

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D                           
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRT---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++       +    A  +  +    ++    +   V    P          
Sbjct: 46  ----NHADVVLMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 209


>gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 200

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|240948096|ref|ZP_04752506.1| CitB protein [Actinobacillus minor NM305]
 gi|240297576|gb|EER48068.1| CitB protein [Actinobacillus minor NM305]
          Length = 201

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 38/230 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+VL  +     +  S L +  + +  +            +  L               
Sbjct: 2   INVVLIDDHMIVRAGFSQLLSLEEDIQVIGEFGSAKETRQNLPRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +    L++ +             R   +   V  +            
Sbjct: 47  KPDICILDISMPDENGLSLLQDI---------PSGIRC--IMLSVNDSELIVKKALELGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++  G  ++ +   ++                +     +LT
Sbjct: 96  KGYLSKRCSAEELIQAVRTVYAGGVYLMPELTTKLV------------SSRNNSPIEQLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE E    + +G  + EIA  L +S  TV+ + A+ M K   K      
Sbjct: 144 KREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNVELA 193


>gi|145596336|ref|YP_001160633.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305673|gb|ABP56255.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 228

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 7/204 (3%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 + A  + VG +  +          + D ++      +      L    + Y   
Sbjct: 32  AGVRAELGAHVDVVGEASTVGEAVSRIAATEPDVVLLDVHMPEGGGRAVLEAIRRTYP-- 89

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                L   V     + I         Y + T     +   +  +     +        +
Sbjct: 90  -HVRFLALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAVRRVAEGDAVFSP----RL 144

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                          V   +  +LT RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 145 AGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 204

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK    +R     +A    +V
Sbjct: 205 NVLRKLQMSSRYELSRWAADRRLV 228


>gi|302337063|ref|YP_003802269.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634248|gb|ADK79675.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 216

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 28/228 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  ++ +      +L    + +  +            +  +               
Sbjct: 2   IRIMICEDEREAREGFRYLLGLDEEIRVVGAFASAEQLIDSIREVG-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +        +  +         +F    + ++      
Sbjct: 48  TPDVVMMDIGLPEMSGIEATRIIHEK-----WPQINIL---ILTIFEEEEKILSAIQAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  L+  G  I       +         + K        D+ LT
Sbjct: 100 SGYVLKNTRPGELTSQIKALYRGGSPISPQIARTL------LGELRKEKSPADHVDYNLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            RE++ +  I  G T  EIA    IS +TV  +I  I +K    +R  
Sbjct: 154 PRELDVVKGIIAGYTYREIADRYNISGSTVKKHILHIYKKLNVSSRVE 201


>gi|171058086|ref|YP_001790435.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775531|gb|ACB33670.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 211

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 71/229 (31%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L +++  +   S      +     G           +    LD  
Sbjct: 3   MRVFIADDHPVVRQGLKQLLGAEADFSVAGEASS-----GHEVIDQCGRFAWDVAVLDYR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL++ +     D+   VL                 +         Y +     
Sbjct: 58  MPGKGGIDLIKELRQRFPDRPVLVLSVCP--------EDQYAMRVLRAGAAGYLTKESAP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   GR +      ++ L  +   +              L+ RE + +  +
Sbjct: 110 EDLVNAIRKVARGGRFVSAALGEQLALSLSTGGDEPLH--------CRLSDREYQIMWLL 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK   EIA  L +S NT++ Y   I+ K   K+ +  + YA+ + +V
Sbjct: 162 ASGKKVGEIAQQLFLSPNTISTYRKRILEKLDLKSNAELMRYAIGHQLV 210


>gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 245

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +   +     ++ S++P + V     +       V+  
Sbjct: 15  IKSYLGRKLKQYGDLKYAYMIMNK--KNPSQVVIISNYPQEWVDTYKENNYQHIDPVILT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P                   N++    + N Y  +  D       L ++F +  
Sbjct: 73  AINTVSPFSWEDNIVINSKLKFSKIFNLSKEYDIVNGYTFVLHDNNNHLAALSIMFEEHA 132

Query: 153 IILRDRLWE-----IGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWIS 198
               + + E     + +L                        G     + RE E L W S
Sbjct: 133 PTDMESIVEENKDKLQMLLIATHEKITTLYKEMTQSPQSKKQGDKEIFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+IL I  +TV  +I ++++K        AI   V   ++
Sbjct: 193 MGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 240


>gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   +     +  + E   GA        D      LD  +    
Sbjct: 6   TRILLADDHALVRHGLRLILDAEPDLMVVAEAADGAEAVEAASADDVDLAILDIAMPRMT 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R ++          ++         +              + Y   +     +  
Sbjct: 66  GIQAAREISR-----RSPGIRILILSM---YDNEQYFFESLKAGASGYVLKSVADRDLLE 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      +    +  +           +  +     +  LT RE E +  I+EG +
Sbjct: 118 ACRAAMRGEPFLYPGAITALI---RDYLQRVRQGERV--PESILTPREEEVVKLIAEGNS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV+ + A+I++K   + R     YA+R  +V
Sbjct: 173 AKEIAETLVISVKTVDRHRANILQKLGMRDRLDLTRYAIRAGLV 216


>gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 25/231 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGA------------SHFLLVRWDLFQEQKLDSIVS 79
           L A ++ ++       R+  +   +G             +   L+    F    +D  + 
Sbjct: 9   LPAPLLVVEDEPPMQSRLRTILAALGYGDDAIWFAGSLEAANTLLATQPFAMALVDVGLP 68

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVA 138
                DL+R M           L                 I +        Y     D  
Sbjct: 69  DGNGIDLIRVMHEQ-----DPALPILVIST----WNTERVIVSALQAGATGYLLKERDDV 119

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLT 195
            I + +      G  I       I  LA   A +    +V  G       L+ RE+E L+
Sbjct: 120 EIILSIRSALRGGAPIDPFVARRILDLAGKMAPLAGGAEVQAGPTVGAPPLSAREIEILS 179

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S+G T+ EIA +L +S+ TV  +I +  +K A  +R+ A+  A  + ++
Sbjct: 180 LVSKGLTNREIAEVLSLSKLTVECHIRNSYKKLAVHSRTQAVFEARASGLL 230


>gi|113970560|ref|YP_734353.1| transcriptional regulator NarL [Shewanella sp. MR-4]
 gi|113885244|gb|ABI39296.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 221

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 21/238 (8%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N V+  ED+     +   P   + + ++I +   +             G    +L     
Sbjct: 3   NQVITEEDKATILLIDDHPMLRNGVKQLIGMADNLCIVAEA-----SCGKDGIILATQLD 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + +  +   E             +   V +   + +       +
Sbjct: 58  PDLILLDLNMPEFNGLETLTKLRECELS--------SRIIVFTVSNYEGDIVNAFKYGAD 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LT 187
            Y     +   +   +        ++          +A   A   +       +D E LT
Sbjct: 110 GYLLKDMEPEDLLQSIQQAAAGKIVLSDA-------IAPILATGLRHNPPATKRDIESLT 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  +S+G ++  IA  L I+  TV  ++ ++++K + K+R  A  + ++ NI
Sbjct: 163 AREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVKNLLKKLSFKSRVEATVWILQENI 220


>gi|328474716|gb|EGF45521.1| response regulator [Vibrio parahaemolyticus 10329]
          Length = 214

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      D          +               +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVVLMDMNMPGIGGLEATKKILRVNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  SGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE--------NPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGEVELTHLAIRHGML 209


>gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
 gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM
           B1551]
 gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319]
          Length = 200

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 63/238 (26%), Gaps = 41/238 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +     +  L    D +  +                    G     L +  
Sbjct: 2   IRIVIAEDQQMMLGALGSLLNLEDDMEVVGKASN---------------GEQAVSLAKQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 +    F              
Sbjct: 47  QPDICVMDIEMPLKTGLEAAEELKDLN----------CKVIILTTFARSGYFQRALKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R+   + + ++                       LT
Sbjct: 97  SGYLLKDSPSEELANSIRSVMAGRRLYAPELVDDLY----------------SESTSPLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  +++GK + EIA  L I   TV NYI++I+ K   K R  AI        
Sbjct: 141 AREKEVLALVADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIEAITRFKEKGW 198


>gi|223041628|ref|ZP_03611826.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202]
 gi|223017557|gb|EEF15970.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202]
          Length = 201

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 38/230 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+VL  +     +  S L +  + +  +            +  L               
Sbjct: 2   INVVLIDDHMIVRAGFSQLLSLEEDIQVIGEFGSAKETRQNLPRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +    L++ +             R   +   V  +            
Sbjct: 47  KPDICILDISMPDENGLSLLQDI---------PSGIRC--IMLSVNDSDLIVKKALELGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++  G  ++ +   ++                H     +LT
Sbjct: 96  KGYLSKRCSAEELIQAVRTVYAGGVYLMPELTTKLV------------SSRHNSPIEQLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE E    + +G  + EIA  L +S  TV+ + A+ M K   K      
Sbjct: 144 KREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNVELA 193


>gi|146320266|ref|YP_001199977.1| response regulator [Streptococcus suis 98HAH33]
 gi|223933224|ref|ZP_03625215.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|253751279|ref|YP_003024420.1| response regulator protein [Streptococcus suis SC84]
 gi|253753180|ref|YP_003026320.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755003|ref|YP_003028143.1| response regulator protein [Streptococcus suis BM407]
 gi|330832254|ref|YP_004401079.1| response regulator [Streptococcus suis ST3]
 gi|145691072|gb|ABP91577.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus suis 98HAH33]
 gi|223898154|gb|EEF64524.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|251815568|emb|CAZ51151.1| response regulator protein [Streptococcus suis SC84]
 gi|251817467|emb|CAZ55208.1| response regulator protein [Streptococcus suis BM407]
 gi|251819425|emb|CAR44899.1| response regulator protein [Streptococcus suis P1/7]
 gi|292557848|gb|ADE30849.1| regulatory protein, LuxR: Response regulator receiver
           [Streptococcus suis GZ1]
 gi|319757560|gb|ADV69502.1| response regulator [Streptococcus suis JS14]
 gi|329306477|gb|AEB80893.1| response regulator [Streptococcus suis ST3]
          Length = 213

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 72/245 (29%), Gaps = 40/245 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  + E     +         +  +           +   +            
Sbjct: 1   MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEV------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--- 121
                    +D ++      +    +           L+   +    +  +  +N     
Sbjct: 49  ---KPDVVVMDLVMPKMTGVEATLAL-----------LKEWPQAQIVILTSYLDNEKIYP 94

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y   T     I   +  +      I  +                + +  H  
Sbjct: 95  VLEAGARGYMLKTSSADEILAAIRKVALGEYAIETE-----------VEKKVEHHKRHPD 143

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +LT RE E LT +++G  +  IA    IS  TV  ++++I+ K A   R+ A+ YA 
Sbjct: 144 LHDDLTAREREILTLLAKGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAF 203

Query: 242 RNNIV 246
           ++ +V
Sbjct: 204 QHGLV 208


>gi|74312714|ref|YP_311133.1| transcriptional regulator NarP [Shigella sonnei Ss046]
 gi|82776204|ref|YP_402553.1| transcriptional regulator NarP [Shigella dysenteriae Sd197]
 gi|157156289|ref|YP_001463544.1| transcriptional regulator NarP [Escherichia coli E24377A]
 gi|157161674|ref|YP_001458992.1| transcriptional regulator NarP [Escherichia coli HS]
 gi|170019493|ref|YP_001724447.1| transcriptional regulator NarP [Escherichia coli ATCC 8739]
 gi|170679777|ref|YP_001744386.1| transcriptional regulator NarP [Escherichia coli SMS-3-5]
 gi|187730582|ref|YP_001879462.1| transcriptional regulator NarP [Shigella boydii CDC 3083-94]
 gi|188495436|ref|ZP_03002706.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|191165388|ref|ZP_03027230.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|193062271|ref|ZP_03043366.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194427123|ref|ZP_03059674.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194436209|ref|ZP_03068311.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209919652|ref|YP_002293736.1| transcriptional regulator NarP [Escherichia coli SE11]
 gi|218554761|ref|YP_002387674.1| transcriptional regulator NarP [Escherichia coli IAI1]
 gi|218695805|ref|YP_002403472.1| transcriptional regulator NarP [Escherichia coli 55989]
 gi|218700662|ref|YP_002408291.1| transcriptional regulator NarP [Escherichia coli IAI39]
 gi|218705722|ref|YP_002413241.1| transcriptional regulator NarP [Escherichia coli UMN026]
 gi|253772883|ref|YP_003035714.1| transcriptional regulator NarP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162205|ref|YP_003045313.1| transcriptional regulator NarP [Escherichia coli B str. REL606]
 gi|256017639|ref|ZP_05431504.1| transcriptional regulator NarP [Shigella sp. D9]
 gi|256022125|ref|ZP_05435990.1| transcriptional regulator NarP [Escherichia sp. 4_1_40B]
 gi|260844795|ref|YP_003222573.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|260856180|ref|YP_003230071.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|260868909|ref|YP_003235311.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|297520422|ref|ZP_06938808.1| transcriptional regulator NarP [Escherichia coli OP50]
 gi|301024278|ref|ZP_07187969.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|307138849|ref|ZP_07498205.1| transcriptional regulator NarP [Escherichia coli H736]
 gi|307311230|ref|ZP_07590874.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|309786632|ref|ZP_07681253.1| response regulator [Shigella dysenteriae 1617]
 gi|312973555|ref|ZP_07787727.1| response regulator [Escherichia coli 1827-70]
 gi|331663697|ref|ZP_08364607.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331668898|ref|ZP_08369746.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331683869|ref|ZP_08384465.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|73856191|gb|AAZ88898.1| nitrate/nitrite response regulator [Shigella sonnei Ss046]
 gi|81240352|gb|ABB61062.1| nitrate/nitrite response regulator [Shigella dysenteriae Sd197]
 gi|157067354|gb|ABV06609.1| nitrate/nitrite response regulator NarP [Escherichia coli HS]
 gi|157078319|gb|ABV18027.1| nitrate/nitrite response regulator NarP [Escherichia coli E24377A]
 gi|169754421|gb|ACA77120.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|170517495|gb|ACB15673.1| nitrate/nitrite response regulator NarP [Escherichia coli SMS-3-5]
 gi|187427574|gb|ACD06848.1| nitrate/nitrite response regulator NarP [Shigella boydii CDC
           3083-94]
 gi|188490635|gb|EDU65738.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638]
 gi|190904551|gb|EDV64258.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A]
 gi|192931937|gb|EDV84536.1| nitrate/nitrite response regulator NarP [Escherichia coli E22]
 gi|194414744|gb|EDX31015.1| nitrate/nitrite response regulator NarP [Escherichia coli B171]
 gi|194424937|gb|EDX40922.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1]
 gi|209912911|dbj|BAG77985.1| nitrate/nitrite response regulator [Escherichia coli SE11]
 gi|218352537|emb|CAU98316.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli 55989]
 gi|218361529|emb|CAQ99120.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI1]
 gi|218370648|emb|CAR18457.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli IAI39]
 gi|218432819|emb|CAR13713.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli UMN026]
 gi|242377829|emb|CAQ32596.1| narP [Escherichia coli BL21(DE3)]
 gi|253323927|gb|ACT28529.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974106|gb|ACT39777.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli B str. REL606]
 gi|253978273|gb|ACT43943.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BL21(DE3)]
 gi|257754829|dbj|BAI26331.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O26:H11 str.
           11368]
 gi|257759942|dbj|BAI31439.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O103:H2 str.
           12009]
 gi|257765265|dbj|BAI36760.1| DNA-binding response regulator NarP in two-component regulatory
           system with NarQ or NarX [Escherichia coli O111:H- str.
           11128]
 gi|284922185|emb|CBG35267.1| nitrate/nitrite response regulator protein [Escherichia coli 042]
 gi|299880482|gb|EFI88693.1| putative nitrate/nitrite response regulator protein NarL
           [Escherichia coli MS 196-1]
 gi|306908736|gb|EFN39233.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|308925541|gb|EFP71027.1| response regulator [Shigella dysenteriae 1617]
 gi|309702505|emb|CBJ01831.1| nitrate/nitrite response regulator protein [Escherichia coli ETEC
           H10407]
 gi|310332150|gb|EFP99385.1| response regulator [Escherichia coli 1827-70]
 gi|315061500|gb|ADT75827.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli W]
 gi|315615453|gb|EFU96085.1| response regulator [Escherichia coli 3431]
 gi|320177206|gb|EFW52214.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae
           CDC 74-1112]
 gi|320199790|gb|EFW74379.1| Nitrate/nitrite response regulator protein [Escherichia coli
           EC4100B]
 gi|323152251|gb|EFZ38541.1| response regulator [Escherichia coli EPECa14]
 gi|323161744|gb|EFZ47626.1| response regulator [Escherichia coli E128010]
 gi|323168652|gb|EFZ54332.1| response regulator [Shigella sonnei 53G]
 gi|323171865|gb|EFZ57509.1| response regulator [Escherichia coli LT-68]
 gi|323184184|gb|EFZ69561.1| response regulator [Escherichia coli 1357]
 gi|323377920|gb|ADX50188.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323936807|gb|EGB33092.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940739|gb|EGB36927.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323945009|gb|EGB41074.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323961585|gb|EGB57192.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323972986|gb|EGB68182.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323977610|gb|EGB72696.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324117918|gb|EGC11817.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331059496|gb|EGI31473.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA143]
 gi|331064092|gb|EGI36003.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA271]
 gi|331078821|gb|EGI50023.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           H299]
 gi|332343973|gb|AEE57307.1| response regulator protein [Escherichia coli UMNK88]
          Length = 215

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|332978517|gb|EGK15227.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 211

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +S +      +  +   D   +    + AL               
Sbjct: 2   IKVLVVDDHDLVRMGISRMLADDAEIEVIGEADSGEAAIRMVKAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +  + +          V             + P          
Sbjct: 47  NPDVVLLDVNMPNIGGVEATKRLRQ----FNDKVKILAVSSVS----SQPYPSMLLKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +    +A +   +  ++   +    D   ++  +           D        L+
Sbjct: 99  NGYITKGTPLAEMIKAIKKVYQGSKYFSSDVAEQLADMLL--------TDNEESPFDRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +   ++  +IA  L +S  TVN Y   I  K    +       A+R+ ++
Sbjct: 151 EREKQVAMMVVNCQSPQQIADQLFVSVKTVNTYRYRIFEKVGVDSDVKLTHLAMRHGLI 209


>gi|303238259|ref|ZP_07324795.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302594305|gb|EFL64017.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 215

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 21/225 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTE-----------YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           + R+  +D     +  + ++ E             G     +          +D  +   
Sbjct: 1   MIRVAIVDDQKLLSESLKSIIENDHDLKVIGCASNGREALEICSSSKPDIVLMDIKMPVC 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +        Y  ++         F              + Y         + 
Sbjct: 61  DGIEGTRMIKEK-----YPEIKVL---ILTTFEDDQNVYEALKNGADGYILKDITPEELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        I  R     +           +  D       +L  REVE +  I+EG 
Sbjct: 113 QAVKNASRGFSIFSRSPFGSVVKKINDADESAEKNDNPI--SIDLKEREVEIIRMIAEGM 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S     N I+ I+ K     R+   ++A +N ++
Sbjct: 171 SNKEIASKLCLSFGRTKNIISEILAKLDLSDRNQLASFAFKNKLI 215


>gi|258624779|ref|ZP_05719710.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM603]
 gi|262173878|ref|ZP_06041555.1| transcriptional regulatory protein UhpA [Vibrio mimicus MB-451]
 gi|258582941|gb|EEW07759.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM603]
 gi|261891236|gb|EEY37223.1| transcriptional regulatory protein UhpA [Vibrio mimicus MB-451]
          Length = 208

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+  ++      +  E   A     +         +D  +  
Sbjct: 5   ALIDDHTIVRSGFAQLLNLEQDMAVQGEYESAKEAFHA-----LTHSPVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +     +           +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHNPNF--------KAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLVDLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   +IA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 QDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHLL 205


>gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 208

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 23/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     +  ++     V       +     G      +     +   LD  
Sbjct: 2   IRVFLVDDHPVVRAGIRFLLEAKGPVQVVGEAES-----GEEALEKIPLLKPEVAVLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +                ++                 +        Y   +   
Sbjct: 57  LPGMSGIE-----TAKTLRTRAPEVRLVALSM---HEDPEYVQSFFEAGGQGYVPKSAVE 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   ++ +           L  +           +       ++ +LT RE+E +  I
Sbjct: 109 AELVDAVLAVVRGEYYAPARLLSRVA----------REMANPHAREAKLTERELEVVRQI 158

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EGKT  EIA  LGIS  TV  Y      K   KTR+  + +A+   ++
Sbjct: 159 AEGKTYKEIAEHLGISEKTVATYRERAAEKLGLKTRAELVRWALERGLL 207


>gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 73/223 (32%), Gaps = 11/223 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           + +    D +     L   V     +  +    G     +VR    +   LD  +     
Sbjct: 4   TRVLIVDDEVLVRSGLGLIVGTAPDLEVVGGCSGGQAERMVRELAPRVVLLDVRMPDLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             ++R +            + P       F T     T        +        ++   
Sbjct: 64  ISVLRRLRALP--------EPPAVAMLTTFDTDEHIGTALRAGAAGFLLKDTAPEQLVHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +L   G ++       +  ++ Y      +          LTGRE++ L  + EG ++
Sbjct: 116 VRVLAAGGSVLSPSVARTV--ISGYV-EGGAADTTAATLTGRLTGRELDVLALLGEGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV ++I++I+ K     R  A   A R  +V
Sbjct: 173 AEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAGLV 215


>gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 215

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 20/218 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D + +    +  + E        L        +  ++   D ++       +    
Sbjct: 6   VLIVDDSPAVLDGLKIILELENFEVVSLCTNAKEAIEFLEKGNADVVLMDIRMPVMDGIE 65

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                   +  ++    +    F          +   + Y   + D   I   +  +   
Sbjct: 66  GTFNIKTKFPNVK---VIILTTFCEEDYIKKSLSFGADGYILKSSDAQHIIDTIYAVLDG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGKTSDE 205
             +  R+       +A + +N  K     +  +      ELT RE++ +  I++G ++ E
Sbjct: 123 KVVFDRE-------IALFISNTLKKEASSFSGNVNVLKNELTERELDIVKLIAQGYSNKE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA +L IS  TV NYI+SI++K   + R+    Y  +N
Sbjct: 176 IANLLFISEGTVRNYISSILQKLQLQNRTQIAIYYYKN 213


>gi|116621908|ref|YP_824064.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225070|gb|ABJ83779.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 214

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 66/242 (27%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ I+L  +     S +  L         +       +       L            
Sbjct: 1   MRKLRILLGDDHAMILSGIKGLLEG--HYEVIGSEKNGRALIETAVRL------------ 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D  R +           L     +F  +            
Sbjct: 47  ---KPDLVVLDVSMPILNGIDAAREIKK--------ALPAAKLIFLTMHTNAIYLRKALH 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +     +   +  +      +  D                +S     G   
Sbjct: 96  AGASGYVLKSGAAEELLTAIEEVCKGYIYVGPD-------FGQDVIESIRSTGDSQGGLP 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+   L  ++EGK + EI  I  IS  TV  + + +M +    + +    +A++  
Sbjct: 149 ALTDRQRHILQLLAEGKQNKEIGEIAHISVRTVEFHRSRLMSRLGAHSVAELTRFAIQEG 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|302553638|ref|ZP_07305980.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471256|gb|EFL34349.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 247

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 14/204 (6%)

Query: 46  TMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              +  + E         ++     +   LD  +      +++R  A    D    V   
Sbjct: 55  QTGVEVVGEAADVDQAVTVITATRPEVVLLDVHLPGGGGVEVLRRCAALMADTEQPV--- 111

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   V     + I    G    Y + T     +   +  +     +           
Sbjct: 112 -RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDSVFRVQEGDAVFSPR------- 163

Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV ++++
Sbjct: 164 LAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVS 223

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     R     +A    +V
Sbjct: 224 AVLRKLQLSNRHELTRWATARRLV 247


>gi|91775168|ref|YP_544924.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91709155|gb|ABE49083.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 213

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + E   S +  L  ++D +  +   D                G   +      
Sbjct: 5   IRIMLVDDHEVVRSGLRRLLEQNDGVEVIAEADS---------------GEQAYQFYGEH 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +      + +R +             +   +   +               
Sbjct: 50  MPDVIVMDMSMPGMGGLEALRRIIAR--------YPQARVIIFSMHENAAFASQALGAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + +     +   +  +      +      +I L         ++          L+
Sbjct: 102 RAYVAKSGAADDLVQAVREVAQGKGYLSPGIAQQIAL---------QTLSGSDDPTRLLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++ GK  +EI+ IL IS+ TV NY   + +K    +    +  A+++ ++
Sbjct: 153 AREFEVFRLLAAGKGVEEISTILKISQKTVANYQTLLKQKLGITSPIELVRLAIKHGVI 211


>gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
 gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 76/232 (32%), Gaps = 15/232 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R+ LL ++  L    +    +      +G  +            + +++  S +P     
Sbjct: 16  RAALLHQLNGLRDADAVIRSLQPAVALLGFDYCAYALRAAIPITRFNTLCWSTYPEPWCE 75

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT-------LPENITPPAGMDNRYCSLTFDVARIR 141
              +        VLQ       PV  +                G+++ +     D   I 
Sbjct: 76  HYRVHGYLAIDPVLQFGQRCVKPVLWSGIATADARFWADARQHGLNHGWSHTIRDHTGIF 135

Query: 142 IGLMLLFPKGRIILRDRLW----EIGLLAAYQANMFKSYDV---HWGKDFELTGREVECL 194
               L+  +   I  D L     E+  L+        +             L   E + L
Sbjct: 136 GTFSLV-RRATPITEDELAVSEPEMIWLSQRAHGSISTLMAEKVLPDAATRLKEVERQTL 194

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGKT+ E+A IL ++   VN +I + + K     ++ A+  A    ++
Sbjct: 195 HWTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAALLGLI 246


>gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana]
          Length = 245

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 28/226 (12%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +    E  G   +  +  +   +   + ++ S++P + V     +       V+    
Sbjct: 17  EYLNRQLELHGNLKYAYMIMNK--KNPSEVVIISNYPKEWVDTYLENNYQHIDPVILTAI 74

Query: 107 ELFCPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
               P      + +                 + N Y  +  D       L L+  +    
Sbjct: 75  NKISPFSWDDNQVVNSRLKFSRIFNLSKQYNIVNGYTFVLHDNNSNLATLSLMLDEQDSS 134

Query: 155 LRDRL-----WEIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWISEG 200
             + +      +I +L                    +    K    + RE E L W S G
Sbjct: 135 SIEEVIKSNKNKIQMLLIEAHEKITSLYKNIIESEKNKAINKKDIFSQRENEILYWASIG 194

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT  EIAVILGI  +TV  +I ++++K        AI   V   ++
Sbjct: 195 KTYPEIAVILGIKISTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 240


>gi|271966618|ref|YP_003340814.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509793|gb|ACZ88071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 220

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     LV         +D  +     
Sbjct: 4   RVLVADDQALVRGGFRMILEARADLEVVGEAGDGREAVALVERLRPDVVLMDVRMPDVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  S              +    +              + +       A +   
Sbjct: 64  LEATRRIVASGSP--------ARVVILTTYDVDEAVFAALRAGASAFLLKDVRPAELVEA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +       A++             L+ REVE L  ++   ++
Sbjct: 116 VRVVARGDALLAPSVTRRL---LDRFASVLPDPAGPPADLGRLSEREVEVLRLVALALSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV  ++++++RK   + R  A+  A    +V
Sbjct: 173 AEIAERLVLTEATVKTHVSAVLRKLGLRDRVQAVVLAYDVGLV 215


>gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 231

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 17/228 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           A+++ +D        +    +  G     +      WD+ Q    D +  SD     V  
Sbjct: 3   AQLLLVDDEPGLREAVKEYLQESGFKVQTASNAREGWDMMQHSIPDLV-ISDIMMPQVDG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               ++ +     Q    +F        + I       + Y +  FD   +   +  L  
Sbjct: 62  YHFLKQMRDDARFQALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLLV 121

Query: 150 KGRIILRDR------------LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           +  +  +                EI  +    +              +LT RE   L  +
Sbjct: 122 RHTVKTQVASEDTENMDIAKLAHEISKIKDLLSPRNAITQTPPPFKIDLTPREQSVLNLV 181

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+ + +
Sbjct: 182 AEGLMNKEIARRLETSVRNVEKYVSRLFSKTGTNSRTELVRFALEHGL 229


>gi|188585380|ref|YP_001916925.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350067|gb|ACB84337.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 232

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 23/234 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALT-EYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     M  +     G     +    L     +D  +      
Sbjct: 6   VMIADDQTILADSLKTIIDLEDDMEVVAVSSNGEETLEISEKLLPDIILMDIRMPKMDGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +        +  + Y  ++    +    F      +   +   + Y     D  ++   +
Sbjct: 66  E-----CTKKLKEKYPEIKI---IILTTFDHDEYIVDALSYGASGYLLKDIDGDKLISSI 117

Query: 145 MLLFPKGRIILRDRLWEI---------GLLAAYQANMFKSYDVHWGKDF-----ELTGRE 190
              +    +I      ++              ++    KS D    +       ELT RE
Sbjct: 118 RDAYNDKLLIPTSIAAKLIGKIDNRKQQPTDDHKDEPLKSQDRKESQKEINLYEELTQRE 177

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +E    +  G ++ +IA  L I++ TV NYI +I  K   K R+ A+ Y  +  
Sbjct: 178 IEIAQLMVAGLSNKKIAEKLFITQGTVKNYITNIYSKLGVKERTSAVLYLQKLG 231


>gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 217

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 10/214 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
             R++ +D        + A+    G     L        +   S+V      D+     +
Sbjct: 3   APRILIVDDHQLAREGLRAVLAGDGMEVVGLASTGEEAVELAGSLVPDVILMDVRLGDGI 62

Query: 93  SEKDKYYNVLQRPT---ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              +    V+        +   +           A     Y     ++  +R  +  +  
Sbjct: 63  DGLEATRQVVALGLPIKVVMLTLHEMPGYVREALAAGAAGYVLKDTEIGDLRAAINQVMA 122

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               +  D       L +         +        LT RE E +  ++EG T+ EIA  
Sbjct: 123 GQSALPLD-------LVSAAMRAENRPEPKGDLSQILTSREQEVVELVAEGLTNKEIARK 175

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L IS  TV  ++  ++ K     R+ A   AV+ 
Sbjct: 176 LDISPATVKVHVERLIGKLGVADRTQAAVMAVKL 209


>gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 240

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 15/231 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + + R             +      +G  H +L    L  ++    +  + WP    +  
Sbjct: 8   EFVERCRAHTAPGPLLDDVLLTVRNLGFEHLILSGVPLGGQKLAPMVELNGWPEGWFKRY 67

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDV 137
             +E      V     +   P                          G+ + +      V
Sbjct: 68  VEAEHAAVDGVCIYSAKTLKPFLWADVPAKWSDTKGSRRVAGEATEFGISSGFAVPMLSV 127

Query: 138 ARIRIGLMLLFPKGR-IILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLT 195
              +  L          +      ++  +A Y     ++       ++  LT RE E L 
Sbjct: 128 HHWQSVLSFASSAKVCALSPREEVQLVTMAVYAGMAIQALSHGDEVEEGLLTEREKEVLL 187

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GKTS E + ILG++  TV  +           T + AI  AVR  ++
Sbjct: 188 WAAAGKTSSETSQILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRMI 238


>gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1]
 gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1]
          Length = 217

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 73/237 (30%), Gaps = 25/237 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +     S +++L  +      +                    G S +L V     
Sbjct: 4   VLIADDHAVVRSGLAYLINQQPNFEVIDEAAD---------------GTSTYLRVEQGDV 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +    P      +      +++  ++                          
Sbjct: 49  DILVMDLSM----PPGESGLITTQRIHEHFPDVRILILSM---HEEQEYINKALHNGAMS 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +     +   L  +      +       +   +  Q       D +      L+ R
Sbjct: 102 YIMKSSSDDELLKALKTVANGEEYVD---TNIVITKSDVQQINSNGVDTNLTGYNGLSKR 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E    ++ G ++ EIA  L IS  TV  + A+IMRK A   R+  I YA+ ++++
Sbjct: 159 EREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNRADLIRYAIHHHLI 215


>gi|262043446|ref|ZP_06016569.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259039188|gb|EEW40336.1| response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 235

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +       C         A               +
Sbjct: 19  INVLLVDDHELVRAGIRRILEDIKGIKVAGEACCDEDAVKWCRA---------------N 63

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S        +     +   V    P          
Sbjct: 64  SADVVLMDMNMPGIGGLEATRKIARS--------VAGTKVIMLTVHTENPLPAKVMQAGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L            +        L+
Sbjct: 116 AGYLSKGAASQEVVNAIRCVASGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 168

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 169 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 226


>gi|326333266|ref|ZP_08199513.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325948910|gb|EGD41003.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 64/246 (26%), Gaps = 25/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   + + +  + E   S +  +      L                       G   
Sbjct: 1   MSEQEAPIRVAIVDDQELMRSALRMMVESQPDLELAGEAAD---------------GHEA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LVR        +D  +           +   +             +    F       
Sbjct: 46  LALVRTKRVDVVLMDLRMPRLDGIQATAAITGEQ--------PATRVIALTTFDLDDYAF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +         I   +  +     ++       +  L               
Sbjct: 98  PSIRAGASGFLLKDARAEEIVEAIRTVHAGHAVVAPSTTRRL--LEHVATAPAPDNGRAA 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE++ L  ++ G ++ EIA  + +S  TV  ++  ++ K   + R  A+  A
Sbjct: 156 DIRATLTPRELDMLLELATGDSNAEIACRVHLSEATVKTHVGHVLAKLGLRDRVQAVVLA 215

Query: 241 VRNNIV 246
               +V
Sbjct: 216 YETGLV 221


>gi|311279137|ref|YP_003941368.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308748332|gb|ADO48084.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 218

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +     + C         A               +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVAGEVCCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   V    P          
Sbjct: 47  AADVVLMDMNMPGIGGLEATRKIARSATD--------TKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +F   R I  D   ++ L            +        L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRSVFAGQRYIASDIAQQMALSQI-------EPEKTESPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|242239203|ref|YP_002987384.1| transcriptional regulator NarL [Dickeya dadantii Ech703]
 gi|242131260|gb|ACS85562.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech703]
          Length = 216

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 21/232 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E+      +   P   + + ++I +   +             G     +        
Sbjct: 1   MTNEEPATVLLIDDHPMLRNGVKQLIGMTADLRVIDEA-----SHGEQGVEMAERWDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + ++      + Y 
Sbjct: 56  ILLDLNMPGMNGLETLARLREKPLSGRIVVF--------SVSNHEDDVVSALKNGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
               +   +   L        ++       +           +       +D + LT RE
Sbjct: 108 LKDMEPEDLLAALQQAAAGKMVLSDTLTPILA-------ASLRENRHPGDRDIQQLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + L  I++G  +  IA  L I+ +TV  ++  +++K   ++R  A  + ++
Sbjct: 161 KDILKLIAQGLPNKVIARKLNITESTVKVHVKHLLKKMKLRSRVEAAVWVLQ 212


>gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
 gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603]
          Length = 207

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 65/224 (29%), Gaps = 19/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +       + L  +I    +              G      +         +D  +    
Sbjct: 1   MDDHFVVREGLKLIIETSDSFQIIGEA-----ANGEEALSFIEKKEPDVILMDLNMPKMS 55

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + +  +   +             +    ++     +         Y     D   +  
Sbjct: 56  GLETIEALNKKQN--------HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFR 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L        ++  D + +I           K       +   LT +E+  L  I+ G  
Sbjct: 108 TLEAAIRGEILLQPDIMEKI------VKYKRKEVHADKVEGNNLTEKELFVLKAIARGYK 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 162 NKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|224367385|ref|YP_002601548.1| DNA-binding response regulator (LuxR-family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690101|gb|ACN13384.1| DNA-binding response regulator (LuxR-family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 220

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 60/225 (26%), Gaps = 23/225 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY----------VGASHFLLVRWDLFQEQKLDSIVSSD 81
           +  R++  D        +  L E            G     L          +D  + + 
Sbjct: 1   MPPRILIADDHAIVREGLRVLLERKGLEVPWMAENGRQAVCLAVKFKPDIVIMDITMPNM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +           L R   +   +                 Y       A + 
Sbjct: 61  NGSIATEKIMQ--------ALPRTRVIALSMHADRRYIDRMFNAGAIAYVLKDSAFAELF 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +      I       +        +              ++ RE E L  I+EG 
Sbjct: 113 DAIQAVGRGKYYISPSIAKTLADSCTSAPD-----TPQKCPFGRISPREREVLQLIAEGV 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA  L +S  TV  +  +IM K    + +G   +A++  +V
Sbjct: 168 KTRQIAERLFVSIKTVEAHRRNIMNKLMISSVAGLTRFAIQEGLV 212


>gi|134098243|ref|YP_001103904.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004336|ref|ZP_06562309.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910866|emb|CAM00979.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 218

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 11/224 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +     +  + E   GA     VR        +D  +   
Sbjct: 1   MTRILLAEDEQIVRAGLRKILESAGDLTVIAEAGDGAEAVTGVRRHAPDVVVMDIQMPRL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +                 L   +F       +      + +         + 
Sbjct: 61  DGLAATRQITSLPAPP--------KILILTMFDFDANVYSAIEAGASGFLLKDARPEELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + ++     ++       +  L+ +                ELT RE + L+ +  G 
Sbjct: 113 NAIRVIADGDAMLSPSVTRRL--LSHFADRNSPRGPTAVRGLDELTPRERQILSLVGGGL 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++  IA  LG + +TV  +++ ++ K   + R      A    I
Sbjct: 171 SNASIAKTLGATESTVKGHVSRLLMKLDCENRVQLALIAHNAGI 214


>gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v]
          Length = 215

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIAAVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter bemidjiensis Bem]
          Length = 216

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     M  + E   GA    L R        +D  +      
Sbjct: 5   VLIVDDHTIVRQGLRVLIDKEQDMEVIAEAATGAEAIRLAREKRPDVTVMDITMPDLNGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +             +   L   +       +       N Y       A +   +
Sbjct: 65  DATRAIIAEW--------PQARVLALSMESDRRFVVEVLKAGANGYVLKDSAFAELATAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTS 203
             +      +       +           +         +E L+ RE E L  I++G+ +
Sbjct: 117 RAVATGETYLPSRVTTLL------IKEYLQRIPDEVPATYENLSQREREILQLIADGRNA 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA   G+S  TV N   SIM+K    + +    YAVR  +
Sbjct: 171 KEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212


>gi|331003869|ref|ZP_08327361.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412061|gb|EGG91458.1| hypothetical protein HMPREF0491_02223 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 217

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  + E         A    L      +E++ D I+       L   
Sbjct: 4   VLIADDQELIRESLKIILESKPDIEVTDAVSDGLEVIRSVREKRPDIILLDIRMPRLDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                  + Y  ++    +    F              + Y      +  +   +  ++ 
Sbjct: 64  SCTKIIKEGYPDIKI---IILTTFDDDEYVFNALKYGASGYLLKGISMESLVEAINTVYQ 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I  D   ++    +  A   ++  V       +T  E   +  +++GK++ EIA  
Sbjct: 121 GQAMINPDIASKVLRFFSKLAVNNETIHVPTENVKAITKNEWSIIEEVAKGKSNKEIAKE 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  S  TV NY+++I+ K   + R+    +A+   
Sbjct: 181 LNFSEGTVRNYLSTILDKLELRDRTQLAIWAIGRG 215


>gi|320007550|gb|ADW02400.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 227

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 64/223 (28%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   LVR  +     +D  +     
Sbjct: 3   RVGIVDDQALMRAGFRALLDAEEGIEVVGEAADGRAAVELVRAYVPDVVLMDVQMPVMTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D  R +A          L R   +    +                +     + A +   
Sbjct: 63  IDATRAIAA------DPALARVHVVILTNYGLDEYVFDALRAGAAGFLLKDTEPAELLRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++       +                       LT RE E     + G T+
Sbjct: 117 VEVAAGGEALLSPAVTRRLIG----AFVSRPPDRATAPGLETLTRREREATALAARGLTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIAV + +S  T   +I+  M K   + R+  + +A  + +V
Sbjct: 173 DEIAVHMVVSPLTAKTHISRAMTKLRARDRAQLVVFAYESGLV 215


>gi|256395191|ref|YP_003116755.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361417|gb|ACU74914.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 217

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 54/213 (25%), Gaps = 9/213 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            D    W   +       G                    +   +V       L      +
Sbjct: 3   ADDHPMWRDAVARDLAEAGYDVVATAGDGEEAVRRGTAARPQVVVLDMQMPRLSGAEVTA 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                   ++              + +         Y   +     +   +  +     +
Sbjct: 63  RLVAADPDVKVL---VLSASGEQQDVLQAVKAGAIGYLVKSASREELLAAVERIAVGDPV 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGI 212
                   +       A +          D   LT RE E L  +++G +  +IA  L +
Sbjct: 120 FTPGLAGLVLGEFRKLAMVPPGAGAGTAADTPRLTDRETEVLRLVAKGLSYKQIADRLVL 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ + + K     R   + YA+   +
Sbjct: 180 SHRTVQNHVQNTLNKLQLHNRVELVRYAIAQGL 212


>gi|162456402|ref|YP_001618769.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
 gi|161166984|emb|CAN98289.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
          Length = 233

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 19/225 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P   +  AR +  +  +    +     + +                 +D  +   
Sbjct: 26  LIDDHPVVREGFARALSDEPDMVVVGQAGTAADAL-----RETASCKPDVVLVDLNIPDR 80

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L+  +           L +   L    +                Y   T  +  + 
Sbjct: 81  DGIELLGALRAQ--------LPQAKLLVLSGYDDEFRVAEALRAGAQGYLVKTSKLEEVI 132

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +   G  +       +         M K      G    LT RE + L  ++ G 
Sbjct: 133 EGIRRIATGGAPLSSSIAGAV------VRAMRKPASEGSGGLDALTPRERQVLRLLAAGV 186

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ E A  L IS  TV  +   I  K   K+       AVR  ++
Sbjct: 187 STRETAARLTISPKTVETHRVRIYAKLGCKSAVELTRIAVRTGLI 231


>gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 213

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L  +       +  + T +D    +                    G     L R 
Sbjct: 2   KFTVLLVDDHAVVRQGLVSILTMTDDFTLVGEAGD---------------GVHAIELARE 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD ++        +R +     +    VL                  +     
Sbjct: 47  HQPDLIVLDLLMPGMDAAATIRSLRSLSPNSRIAVL--------TSSDDDNLAFSAIEAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +   +     +   L  L     +I  D    I                       L
Sbjct: 99  AHSFLLKSMSGDALLDTLRRLAEGEAVIHPDVAHRILRSVRTARER------VTDPFASL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L  ++EG ++  I  +L IS +TV  +I +++ K   + R+ A+A+A R+ ++
Sbjct: 153 TEREMDVLRALAEGSSNGRIGKMLNISESTVKTHIGNVLAKLDLRDRTQAVAFAWRHGLI 212


>gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 216

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 77/216 (35%), Gaps = 11/216 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRC 89
           R++ +D        +  + E        L        +  +++  D ++       +   
Sbjct: 5   RILIVDDNKDVLYGLKIILELENFEITGLCTNAKEAIEFLEKRNADVVLMDIRMPVMDGI 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                    +  ++    +    F          +   + Y   + D   I   +  +  
Sbjct: 65  EGTFNIKVRFPNVR---VIILTTFCEEDYIKKSLSFGADGYILKSSDAQHIIDTIYAVLD 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +I ++       +A       ++ +    K   L+ RE+E    I++G ++ +I+ +
Sbjct: 122 GKVVIDKEIA---LFVANIFKKDLQNVNTTENKLKNLSERELEIARLIAQGYSNKDISKM 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L IS  TV NYI++I+ K   K R+    Y + N++
Sbjct: 179 LFISEGTVRNYISTILEKLELKNRTQIAIYYLSNSL 214


>gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 211

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V + L  + E     +  +   S  +  +       S   R+ A             
Sbjct: 1   MTGVRVFLLDDHEIVRRGIREMLEDSGDIEVVGEASTAASALRRIPAA------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      ++ R +  ++      +L          +           
Sbjct: 49  ---RPDVAVLDARLPDGNGIEVCREIRSTQPTVGCLIL--------TSYDDDDALFAAIM 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +     ++      +            +   V   +  
Sbjct: 98  AGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQK-------VLARLRDEPVEDEQLS 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L  RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  +A R 
Sbjct: 151 ALGARERQILRLIAEGMTNRQIAACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209


>gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 237

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 21/188 (11%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------GMD 127
           +++P + V             V+        P        +                G+ 
Sbjct: 46  TNYPDEWVTQYKEKGLQYTDPVVITALNRLTPFSWNEKLLVRSDFNFEKLFIQASQFGII 105

Query: 128 NRYCSLTFDVARIRIGLMLL-----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           N Y  +  D     + L  +       +   +L     +I LL A     + +      K
Sbjct: 106 NGYTFVLHDNQNNLVTLSFIIPAAKGAEIMELLIQHKGDISLLLASVHETYLTLTSLSEK 165

Query: 183 DF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           D     + T RE E L W S GKT  E  +ILGI   TV  ++++I++K        A+ 
Sbjct: 166 DTDKHSQFTPRENEILHWTSLGKTYQETGMILGIKVRTVKFHMSNIVKKMGVANARHAVR 225

Query: 239 YAVRNNIV 246
             V   ++
Sbjct: 226 LGVELQLI 233


>gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 234

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  ++    + +  +      L  +                    GA    +    
Sbjct: 20  VRVVLADDERMVRTALRVILEAEPDLTVVGEAST---------------GAEAVSVTAEA 64

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +            + P  L    F              
Sbjct: 65  GPDVVLMDVRMPELNGIRATERIVAGPG-------RPPKVLVVTTFENDAYVYDALRAGA 117

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + L+     ++    +  +   A + A           K   LT
Sbjct: 118 AGFLLKRVAADELIQAVRLMARSDSLLFPAAVRSLA--AEHGARRTAPVPPWARK---LT 172

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G T+ EIA  +G+   TV +++A+++ KT  + R+ A+  A  +  +
Sbjct: 173 EREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 231


>gi|328885722|emb|CCA58961.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 221

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     +  + E   GA      R        LD  +    
Sbjct: 9   ARILLADDHTLVRRGVRLILDAEPDLAVVAEAADGAVAVTQARSLDIDLAVLDIAMPGQT 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +A         +      L   ++              + Y   +     +  
Sbjct: 69  GLQAARELAR--------IRPGLRILMLTMYDNEQYFFEALRAGASGYVLKSVADRDLVE 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      I      E  L+ +Y  +  ++      +    T RE E L  ++EG +
Sbjct: 121 ACRAALRDEPFIYPGA--ETTLIRSYL-DRARTGGPIPDRAI--TEREEEILKLVAEGHS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EI  +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 176 SKEIGDLLVISPKTVERHRANLLQKLGLRDRLELTRYAIRVGLI 219


>gi|168069377|ref|XP_001786429.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162661379|gb|EDQ48759.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 563

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 19/230 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRW 66
             T  +       D + R++ +D        +  L E             G     L R 
Sbjct: 342 LVTCTLPRQTELKDEVIRLLVVDDHPVIRESLRTLLEEQQDFQVVGTAEDGEQAIELCRQ 401

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              Q   +D  +         R +  S     +  ++         F    + +      
Sbjct: 402 LRPQLVLMDVDMPIVDGISASRTIKES-----WPHIRIL---ILTTFEDTKQALEALRSG 453

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +   +  +   G +I +    ++        +      +     ++L
Sbjct: 454 VDGYLLKSMQPLELAETIRTVHRGGTLIEQGMSHKLFAQLEADNSGDDPSSIKASSAYDL 513

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           T RE+E L ++S+G     IA    +S  TV NY +S   K   + R  A
Sbjct: 514 TPRELEILQFVSKGLRYKSIASNFYLSDGTVRNYASSAYLKLGVRNREEA 563


>gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  +L  + E   S +  +  R D +A +            + A                
Sbjct: 6   IAALLVDDQELVRSGLRRILRRKDGIAVVGECADGDEVPAAVAAY--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +              L    F              
Sbjct: 51  RPDVVVMDLRMKRVNGIEATRRLTAAGGPP---------VLALTTFSDEELLSGVLRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +      +       +       A              +LT
Sbjct: 102 SGFVLKDSPAEELIRAVRAVARGDGFLDPSVTARVLDTYRTAAEE-----PVPEAVDDLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  +++G+++ EIA  L IS  TV ++I  I  K   + R+ AI YA +  IV
Sbjct: 157 PRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKGIV 215


>gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein
           [Verrucosispora maris AB-18-032]
          Length = 211

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 6/196 (3%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           A  + VG +        +  +   D I+             + +       +        
Sbjct: 21  AQVDVVGEAADGRAALSVIAQTMPDVILLDLRMPRFDGIWTIEQLKAADIDIPVL---VL 77

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             F      +         Y      + ++   +  L   G +I          +     
Sbjct: 78  TTFDDDALVLGALRAGARGYLLKDVTLEQLTRAIHTLADGGTLIAPSITDR---MLRAIR 134

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +              LT RE E L  ++ G ++ EIA  L ++  TV N+++ I+ K   
Sbjct: 135 SGPSPAGPDAPTVQSLTEREREVLRLVAHGYSNREIAGALFLAEGTVKNHVSMILTKLGA 194

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A+  A+   I+
Sbjct: 195 RDRTNAVLRALHEGIL 210


>gi|330447815|ref|ZP_08311463.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492006|dbj|GAA05960.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 214

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 67/241 (27%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + +V+  + +               +AR+  L+  +         T   G     ++ 
Sbjct: 4   QTIKVVIVDDHQVVI---------DGFMARLQ-LEPDIDVIG-----TASNGIEALEVIS 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D    +     D           L   +       +     
Sbjct: 49  QLDPDVILMDISMPIMNGIDATAQIKKQYPD--------AKVLMLTMHDNREYIMKVMQV 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y        ++   +  +              I   A        +  +   +   
Sbjct: 101 GAMGYMLKEISAEKMVQAIKTVNQGATYFCETTSQTIFTQA--------TAPIAAPEVNP 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  +++G +S +IA  L IS  TV  +  +I  K    + +    YA+   +
Sbjct: 153 LSRREEGILKHVAQGLSSKQIAKALDISYRTVETHRQNIKHKLDLHSTAELAKYALEKGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|294338655|emb|CAZ86984.1| VsrD [Thiomonas sp. 3As]
          Length = 208

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 32/234 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCT-----VSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R   +       + LAR +  +             M ++ +              +   
Sbjct: 1   MRVLIIDDHALLGESLARFLGSNDMQAVWCGDLARAMQSIRDQ------------SWSVV 48

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +      DL++ + L         L        P        +    G    Y +
Sbjct: 49  LLDLSMPQGNGLDLLKRIKLMH-----PDLPVLILSMHP---EQQFALRALRGGAAGYLT 100

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +   GR +           A   AN     +        L+ RE++
Sbjct: 101 KGCSPDVLVEAIQKVVHGGRYLTPGV-------AEQLANYMNEGEAAEEPHARLSDREMQ 153

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               + EGK+ +++A  L IS  TV+ +   +M K A    +  + YA+   IV
Sbjct: 154 VFMRLVEGKSVNQVADELHISCKTVSTHKTRLMHKLALDNDADLVRYAMHQGIV 207


>gi|205372380|ref|ZP_03225194.1| response regulator receiver [Bacillus coahuilensis m4-4]
          Length = 210

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           + +   V       + L  ++ ++        +       G     +    L     +D 
Sbjct: 2   KIKLMLVEDQELIRESLNIVLGMEEDFDLIGAV-----VNGEEAIKICEKQLPNVILMDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  + +        +  +Q    +    F  +       +     Y      
Sbjct: 57  NMPIMDGIEATKVI-----KNKWPSVQI---IILTTFEEVQYVKAALSYGAEGYLLKAIH 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + L+     +I +       LLA+         +      F L+ RE + L  
Sbjct: 109 PKDLAASIRLVHRGETLINQGLAK--QLLASIPQENK---EDSIYTKFGLSEREGQILQA 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           I+ G ++ +I+  L ++  TV NY++ I  K   + R GA
Sbjct: 164 IANGLSNKQISQKLFLTEGTVKNYVSKIYAKLDVQDRIGA 203


>gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 210

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  L    D L  +       S    + A+               
Sbjct: 2   IRVALVDDHPVVRAGMRALVDGQDDLTVVGEASDAHSAEQLVAAV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        V   A          +     L    + T  + ++      
Sbjct: 47  RPDVVLMDLNL--GRGPGGVEATARLRALPEPPQV-----LVLTTYDTEADIMSAIDAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +        ++       +   A                   LT
Sbjct: 100 SGYLLKDAPPDDLFRAIRGTARGEVVLAPAVAARLVKRAG-------------SPGPVLT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G+++ E+A  L +S  TV ++++ I  K    TR+ A+A A+  +I+
Sbjct: 147 EREVEILGLLATGQSNRELAKRLFVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHII 205


>gi|318605143|emb|CBY26641.1| transcriptional regulatory protein UhpA [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 209

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 71/229 (31%), Gaps = 28/229 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--LDSI 77
            + +          A+++ L+  +       +  E                     +D  
Sbjct: 4   VALIDDHIVVRSGFAQLLSLEKDIRIIGEYGSAAEAW-------ANLPNTDVHVAVMDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +           + +   +   ++ T     +      + Y +     
Sbjct: 57  MPDESGLSLLKRLRQK--------MPQFRAIILSIYDTTAFVQSAMDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +   G  +  D L  +           +       +   LT RE +    +
Sbjct: 109 DELVQALRTVHGGGLYLCADALRAL-----------RHMPQQPQQLAILTPREKDVFQLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G +   IA  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 158 INGISVKSIAEQLSLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 218

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 70/243 (28%), Gaps = 29/243 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +     + +  +      +  +       +  + +  L            
Sbjct: 1   MSDIRVLLVDDHPVVRAGLRAMLADFPGVTVVAEASEGDAALVELSKL----------HT 50

Query: 65  RWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
             +      +D  + S          +   E             L    + T  + +   
Sbjct: 51  LGEPVDLVLMDLQMGSGMDGVTATEKIKAGEGGNPPP-----PVLILTTYDTDADILAAV 105

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y        +IR  ++        +  +    +                     
Sbjct: 106 EAGASGYMLKDAPPEQIRQAVLSAAAGQTALAPEVAARL-------------MGRIRNPS 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+GREV+ L  ++ G ++  +A  L IS  TV  ++  I  K     R+ AIA A + 
Sbjct: 153 PALSGREVQLLELLATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQR 212

Query: 244 NIV 246
            I+
Sbjct: 213 RII 215


>gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
 gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii
           SH145]
          Length = 229

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 21/228 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGA------------SHFLLVRWDLFQEQKLDSIVS 79
           L   ++ ++       R+  +   +G               + +V+        +D  + 
Sbjct: 10  LPVPVLIVEDEYVIQRRLKIILTNLGYNEDVLLFANTVKEAYSIVQQQPIALALVDLGLP 69

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 ++  +                        +L   I         Y     D   
Sbjct: 70  DGSGISIIEKIREQ-----DAQALILVVSAWSTQDSLFRAI---QAGATGYVLKERDDVE 121

Query: 140 IRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           + + +  +   G  I      E +  ++    +     +        LT RE E L+ ++
Sbjct: 122 VALAIRSILRGGAPIDPFVAREILKQISIPTISGTVEQNRPAADQETLTQREQEILSLVA 181

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ EIA  L +SR TV ++I  I RK +   R+ A++ A    I+
Sbjct: 182 QGLSNREIAEQLCVSRYTVESHIKHIYRKLSVSKRTKAVSTARHLGIL 229


>gi|29570535|gb|AAO85385.1| response regulator [Pseudomonas fluorescens]
 gi|29825730|gb|AAO92275.1| response regulator GacA [Pseudomonas fluorescens]
          Length = 214

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    + L  +   D                G     L R  
Sbjct: 2   IRVLVVEDHDLVRTGITRMLADIEGLQVVGQAD---------------CGEDCLKLAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S+ D    V+              P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVVVTVC--------EEDPFPTRLMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   +  +F   R I      ++ L +         +D        L+
Sbjct: 99  AGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDS-------LS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+       I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMV 210


>gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 245

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +   +     ++ S++P + V     +       V+  
Sbjct: 15  IKSYLGRKLKQYGDLKYAYMIMNK--KNPSQVVIISNYPQEWVNTYKENNYQHIDPVILT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P                   N++    + N Y  +  D       L ++F +  
Sbjct: 73  AINKVSPFSWEDNIVINSKLKFSKIFNLSKEYDIVNGYTFVLHDNNNNLAALSIMFEEHS 132

Query: 153 IILRDRLWE-----IGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWIS 198
               + + E     + +L                  +     G     + RE E L W S
Sbjct: 133 PTDIESIVEENKDKLQMLLITVHEKITTLYKEMTQSTQSRKQGDKEIFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+IL I  +TV  +I ++++K        AI   V   ++
Sbjct: 193 MGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 240


>gi|169630793|ref|YP_001704442.1| two-component LuxR family response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169242760|emb|CAM63788.1| Putative two-component system response regulator, LuxR family
           [Mycobacterium abscessus]
          Length = 215

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 66/238 (27%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S V         +  +      V     + +                
Sbjct: 3   LRVFLVDDHGVFRSGVRAELAGESDIEIVGEAGSVVEAVAGIRS---------------S 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + S     ++             V    +           + I       
Sbjct: 48  APDVVLLDVHMPSGGGVAVING----TIGPVCPVFLALSVS-----DAAEDVIAVIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + T   + +   +  +     +        +  L ++             +   LT
Sbjct: 99  RGYVTKTISGSELADAVRRVAGGDAVFSPRLAGFV--LDSFTGRSNAPEPALDPELDSLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A    +
Sbjct: 157 PRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHTRQL 214


>gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 225

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 22/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q +++VL  +       +  L                        +  +        L  
Sbjct: 5   QPLSVVLADDQPTFRQGLRTLLGFYQ-----AQESFQFHIVGEAASADQA-----ISLAL 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +  D     ++ +          V+                       
Sbjct: 55  EQHPTLLFLDLELPKDDGVAALQHLRQQNYTGKILVI--------SAHQEDEWVFRAMRA 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   +     +   +  +      +  D             + ++   V   +   
Sbjct: 107 GADGYVFKSQLAMNLHQAIQTVLKNEVFLPPDAATGF----FRSFHFYEGRAVQSEQTLH 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L W+ +G ++  IA  L I+  TV  ++ ++  K   K+RS AI  A++  +
Sbjct: 163 LTAREKQVLHWLVQGASNQAIANHLHITIATVKAHLTAVFEKLEVKSRSQAIVKALKLGL 222

Query: 246 V 246
           V
Sbjct: 223 V 223


>gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 245

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 84/257 (32%), Gaps = 32/257 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  ++    SF+  +    +  +    +            +T   GA+   L   D
Sbjct: 3   VKVLILEDNPVARSFLCRVVR--ESFSDANHITEAGDLESARRQITLAGGAT--GLHGVD 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F+   +D  +      +L+  +A              T++   ++              
Sbjct: 59  PFKLILIDLELPDGNGMELLAELA----------HYPATKIVTTLYSDDEHLFPALQHGA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA----------------- 170
           + Y         +   L  +      +       +       A                 
Sbjct: 109 DGYLLKVDRFEVLVEELQKIVRGQPPLSPAIARRLLTHFRQGAGPDLPPDSGFVSTTGFT 168

Query: 171 -NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +     +    +   LT RE E LT++S+G T  EIA ++GI   TVN++I SI +K  
Sbjct: 169 TSRPVPMEKALPEHERLTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHIKSIYKKLN 228

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ A   A +  +V
Sbjct: 229 VSSRAEAAVLASKQGLV 245


>gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida
           F1]
 gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1]
          Length = 235

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L   +              L + +   +  L        Q     + S++P + +   
Sbjct: 7   EYLHAFVSERSPQKLFDIAVHLAQDLDMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
              +  K             PV  T                 G+ + +     D      
Sbjct: 67  QRDDFYKQDPAANLSHSSTMPVLWTDDLYKEAPQFRETACQHGLRHGWTQSLHDQQHNES 126

Query: 143 GLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            + +  P G I + +       +  L      +      +       +++ RE+E L W 
Sbjct: 127 QISVARPNGHIDMLELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSERELEVLKWS 186

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 187 AAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|291085111|ref|ZP_06352103.2| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
 gi|291072010|gb|EFE10119.1| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
          Length = 225

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 65/236 (27%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       +S L         +                    GAS   L
Sbjct: 13  EATPFRVLIVDDHPLMRRGISQLLQLDPAFNVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDLDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDAASDVYALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G+             + Y       +       
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRSGAKGGKAFSTRV-------SEYLRERDL-FGAQEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|260779032|ref|ZP_05887924.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605196|gb|EEX31491.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 214

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      +          +               +
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMNVAGEAESGEDAAKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVILMDMNMPGIGGLEATKKILRFNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHGML 209


>gi|315180669|gb|ADT87583.1| transcriptional regulator UhpA [Vibrio furnissii NCTC 11218]
          Length = 208

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +     S  + L      +A     D        +  +               
Sbjct: 2   IKIALIDDHTIVRSGFAQLLNLEQDIAVAGEFDSASDAFRGLTQM--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +    L+  +       +    +    +   ++ +            
Sbjct: 47  PVDVAVIDISMPDENGLSLLERLRQ-----HDPAFKA---IILSIYDSASFVKKALDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S     + +   +  +    R +  D L  +            S         +LT
Sbjct: 99  QGYLSKRCGPSELASAIRTVAAGKRYLCADALVNL------------SNPDINNVLVDLT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    + +GK   EIA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 147 KRELEVFDQLIQGKEVKEIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFAIQHHLL 205


>gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 200

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEIIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +                 +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKENS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLSASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|37519842|ref|NP_923219.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210833|dbj|BAC88214.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 224

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 15/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L+         LD+++      +++R              +        V    
Sbjct: 45  GEQAVQLLGALKPDLVLLDAVLPKMSGVEVIRLFRSK-----DPSARILM-----VADDE 94

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + +       N     +     +   + L+     +  +     +             +
Sbjct: 95  EQVMLAFHAGANGCLLKSVQGHELLNAVGLVLSGYLVFGQAITRLVAEEQGTG-----KF 149

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    LT RE E L  I++  T++EIA  L IS  TV+++ A +M K  T+  +G 
Sbjct: 150 GRAAGSVPRLTAREHEVLMLIAQELTNNEIAKRLYISPRTVDSHRARLMGKLGTRNTAGL 209

Query: 237 IAYAVRNNIV 246
           +  A    ++
Sbjct: 210 VRIAAECGLL 219


>gi|238061007|ref|ZP_04605716.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882818|gb|EEP71646.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 231

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 7/204 (3%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 +    E VG +  +            D ++      D      L    + +  +
Sbjct: 35  AGVRAELGVHVEVVGEASTVAEAVARIAATAPDVVLLDVHMPDGGGRAVLESMRRTHPQV 94

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +        V     + I         Y + T     +   +  +     +        +
Sbjct: 95  RFL---ALSVSDAAEDVIGLIRAGARGYVTKTISPDELAAAIRRVADGDAVFSP----RL 147

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                          V   +  +LT RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 148 AGFVLDAFAARPDAPVADPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 207

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     R     +A    +V
Sbjct: 208 NVLRKLQMSNRYELSRWAADRRLV 231


>gi|188582976|ref|YP_001926421.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346474|gb|ACB81886.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 221

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 27/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +VL  +     + +  L      +  +            + A+            
Sbjct: 1   MDRIRVVLADDHPVVLAGIRTLLNADPEVELVGEATDGGEALPMIRAVA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  V       L                +        V            
Sbjct: 50  ---------PDVAVIDVSMPGLNGLELTERVTGECPGTRVL---VLTVHEDAAYVQPLMR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +   G  +           A    +             
Sbjct: 98  AGARGYLLKRSAADDLLRAVRAVASGGVYLDPSIAGH----ALAVPSGSDGRPGMVEGRE 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I++G ++ EIA  + +S  +V  Y A    K   +TR+  I Y   + 
Sbjct: 154 PLSPREAETLRLIAQGFSNKEIARRIDVSVKSVETYKARAAEKLGLRTRAEIIRYGAAHG 213

Query: 245 I 245
            
Sbjct: 214 W 214


>gi|254209388|ref|ZP_04915734.1| DNA-binding response regulator NarL [Burkholderia mallei JHU]
 gi|147750161|gb|EDK57232.1| DNA-binding response regulator NarL [Burkholderia mallei JHU]
          Length = 246

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 31/246 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S V  L  R      +                    G       +  
Sbjct: 16  IRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASD---------------GVEGVKRAKQH 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + ++ +           +     +   V     E  T      
Sbjct: 61  QPDVILLDLNMPGLSGLETLQLLVQD--------VPSAHVVILTVSEDAEELTTALRDGA 112

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW--------EIGLLAAYQANMFKSYDVH 179
             +     D   +  G+        +I               +       A         
Sbjct: 113 CGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPVPAARPAPAAALAPAAHA 172

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE + +  ++ G ++ EIA    ++ +TV  ++ ++++K    +R     Y
Sbjct: 173 SVDPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVY 232

Query: 240 AVRNNI 245
           AV   +
Sbjct: 233 AVERGL 238


>gi|223935686|ref|ZP_03627602.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895694|gb|EEF62139.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 32/233 (13%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           V++ +DE R SFV  L  + +    +                      +  + V  D   
Sbjct: 7   VVDDDDEIRESFVF-LLNQEEGFRCVSQYRTAE---------------AAMVGVPMDEPN 50

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  + +    + VR +  +        +     +   V+    +     A     Y
Sbjct: 51  VLLMDINLPAMSGIECVRKLKAT--------MPGLLVVMLTVYEDTEKIFQSLAAGACGY 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +  ++  G  +      ++                   +   L+ RE
Sbjct: 103 LLKRTSRGELSQAIKQVYDGGSPMSSHIARKVVQYFHQV--------PAPNEIASLSKRE 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E L  +++G    EIA  L IS +TV  ++ SI  K    +R+ A+   ++ 
Sbjct: 155 EEVLHHLAQGYLYKEIADRLSISIDTVRKHLNSIYNKLHVHSRTDAVVKYLQK 207


>gi|147673828|ref|YP_001216783.1| response regulator [Vibrio cholerae O395]
 gi|146315711|gb|ABQ20250.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
          Length = 227

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D                           
Sbjct: 15  ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRT---------------- 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +    A  +  +    ++    +   V    P          
Sbjct: 59  ----NHADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 112 AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S NTVN+Y   +  K            A+R+ I+
Sbjct: 164 ERELQIMLMITKGQKVTDISEQLSLSPNTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 222


>gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 200

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDISIMDIEMPIQSGLDVAEALKKEKSS--------CKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R + +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAAAIRNVMKGKREVSQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|329941768|ref|ZP_08291033.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299485|gb|EGG43385.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 221

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     +    L      +               + AL               
Sbjct: 2   IRVLLADDQSLVRAGFKALLDAQPDIEVAGEAADGEEALGAVRALG-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                    +V  D    ++  +A + +      L     +    F              
Sbjct: 48  -------PDVVLMDIRMPVLDGLAATRRITGDERLAGVKVIMLTTFELDEYVFEAIRSGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     + A +   +  +     ++       +      +                LT
Sbjct: 101 SGFLVKDTEPAELLRAVRAVVEGDALLSPGVTRRL----IAEFAARSKEPAAAASLARLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G +++EIA  L +S  T   +++  M K   + R+  +  A  + +V
Sbjct: 157 EREREVMALVGLGLSNEEIARRLVVSPLTAKIHVSRTMVKLGARDRAQLVVLAYESGLV 215


>gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 232

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 65/232 (28%), Gaps = 15/232 (6%)

Query: 17  EQRTSFVSHLPTRSDLLAR-MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           + R   V       + +   +                    G +   L+         +D
Sbjct: 4   KIRVMIVDDHTIIREGVRLMLEEASDEFQVVGDA-----ADGETALRLMEELQPDVVLMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             + S      +  +           +          ++     I         Y     
Sbjct: 59  LRMPSMDGITAIEQIRRC-----SPQVAIL---ILTTYNEDDLMIRGLQAGACGYLLKDI 110

Query: 136 DVARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +  +   +        ++        +           ++ +       +LT RE E L
Sbjct: 111 RLDTLLNAIRAAARGEILMQSDIMARLLSYTTKSAPFEPRASNQSHQSSIDLTEREREVL 170

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G  S +IA  LGI+  TV  Y+ SI  K    +R+ AI  A+R  I+
Sbjct: 171 IAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITVAIRYGIL 222


>gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
 gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
          Length = 217

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 11/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +        + +   G   ++ V         +D  +    P 
Sbjct: 4   VLIADDHAIVRSGIAYLIDKQPTFQVVGQTANGTDTYMRVEQGDIDILIMDLSM----PP 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +      ++Y +++    +   +                 Y   +   + I   L
Sbjct: 60  GESGLITAQRIHEHYPLVR---MIILSMHEEQEYINKAIHNGAMSYVLKSSPDSEILRAL 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  +       L+    +     DV+      L+ RE E    ++ G T+ 
Sbjct: 117 TQVSNGENYIDENITLTKKDLSQINFD---GVDVNLTGYNSLSKREREVFPLVALGYTNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  TV  + A+I+RK   + R+  + YA+ ++++
Sbjct: 174 EIAAKLFISTKTVEAHKANIVRKLKLENRADLVRYAIHHHLI 215


>gi|330810002|ref|YP_004354464.1| two-component response regulator NarL [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378110|gb|AEA69460.1| Putative two-component response regulator NarL [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 215

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 18/219 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +     +  + E   G     L+         LD+ +      
Sbjct: 9   LLLVDDHPMMRRGIRQMLELEDDLQIVGEASHGEEALTLIEPLKPDLVLLDNNMPQMNGI 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +                 L   V     +         N Y     +   +   +
Sbjct: 69  ETLRRLRAMHYT--------GKVLLFTVSDAEDDIRDALRLDANGYLLKDMEPELLIQYI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I       +                    D ELT RE + L  I+ G ++ 
Sbjct: 121 RDALNGALVISPGLTRVMAQ---------ALRSPPRQADVELTERERQVLKTIAGGYSNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            I   LGI+  TV  ++ +++ K   ++R  A  +A+ +
Sbjct: 172 VIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210


>gi|241554181|ref|YP_002979394.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863487|gb|ACS61149.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 214

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 67/243 (27%), Gaps = 35/243 (14%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ ++L          +  +    D    +            +             +
Sbjct: 3   ERPKIRVLLIDNHPLVLDGLKAVLETFD---HIEVAGTAGLAQTGLE------------I 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R  L Q   +D  +      D +              L +   +   +  +     +  
Sbjct: 48  GRQVLPQVVLMDINMPKLSGIDAIELFRNE--------LPQARVVMLSMHDSREYISSSV 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   +  +   G          +              +      
Sbjct: 100 MHGAAGYILKDVSTDEIVSAIETVAGGGTYFSSGVFDALM------------GERAEEGS 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  I  G+++ EIA  LGI+  T   +  ++ +K    T +G I YA+ +
Sbjct: 148 DPLTPRERDILGLIVAGRSNKEIAETLGITSATAETHRKNLKKKLGIATTAGLIRYALDH 207

Query: 244 NIV 246
            IV
Sbjct: 208 GIV 210


>gi|153216991|ref|ZP_01950755.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153820512|ref|ZP_01973179.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|254848338|ref|ZP_05237688.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297578812|ref|ZP_06940740.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|298498687|ref|ZP_07008494.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|124113973|gb|EAY32793.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|126508945|gb|EAZ71539.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|254844043|gb|EET22457.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297536406|gb|EFH75239.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297543020|gb|EFH79070.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 227

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D                           
Sbjct: 15  ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRT---------------- 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +    A  +  +    ++    +   V    P          
Sbjct: 59  ----NHADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 112 AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 164 ERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 222


>gi|21231619|ref|NP_637536.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768259|ref|YP_243021.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991396|ref|YP_001903406.1| Two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21113311|gb|AAM41460.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573591|gb|AAY49001.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733156|emb|CAP51354.1| Two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 213

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 27/227 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   D L+ M+  +  +             G                +D  + 
Sbjct: 10  VLVVDDHPLLRDGLSAMLGAERDMQVVGEAED-----GEQAVDYYTRLRPDVVLMDLQMP 64

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  ++ +   +             +    +      +         Y   +     
Sbjct: 65  RVDGVQAIQRIRQLDPM--------AKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRE 116

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R               +              D  L+ RE E L  ++ 
Sbjct: 117 LVDTIRDVRRGQR--------------RHVPASVAENIAAHVLDDALSARETEVLNLVAT 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ +I   LGIS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 163 GCSNKQIGNALGISEETVKAHMKNILCKLGVRDRTHAVTVALRRGIL 209


>gi|328551897|gb|AEB22389.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
          Length = 214

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 62/215 (28%), Gaps = 9/215 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S    +    E   G     L+         +D  +      
Sbjct: 3   VMIADDQSIVREGLKMILSLHEGIEVSGEASCGEEVLNLLPQTETDVILMDIRMPGMDGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +        Y  ++    +    F              + Y     D   I   L
Sbjct: 63  EATKAVKA-----RYPSVK---VIILTTFEDGHYIFAGLKSGADGYILKDADSDEIVASL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++      ++     +        +        LT RE++    I EGK++ 
Sbjct: 115 QAVCEGNMMLNPKVTVQVVKALNHMDIPAVQEEPKTNLTEILTPRELDVAKHIMEGKSNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 175 RIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209


>gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 207

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 19/220 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +     +  + E   A   + +         +D ++      
Sbjct: 3   RLLLADDHAIVRAGLRALLEHEDDIEVVGEAATADTAVALCATTP----VDLVLMDLRFG 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +  +   +               + T  + +   A     Y         +   +
Sbjct: 59  AGTSGVDATRNLRSLPNPPHVLV--VTNYDTDADILDAVAAGAAGYLLKDTPPPELLAAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++      ++                       L+ RE++ LT ++ G+++ 
Sbjct: 117 RAASAGDSVLSPAVASKL-------------MTRVRRPATSLSPREIQVLTLVAAGRSNR 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EI   L +S  TV +++  I  K   K+R+ AIA A    
Sbjct: 164 EIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARARELG 203


>gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
 gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri]
 gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC
           29473]
          Length = 247

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 30/230 (13%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    E   +  +  +  D   +  +D  + + +P +               ++  
Sbjct: 15  IRDYIDRKLERYDSPRYTYMVIDK--KNPVDVFIVTSYPDEWADIYTSQNYQHIDPIVLT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
             +   P                    ++    + N +  +  D       L L+     
Sbjct: 73  AFKRISPFAWDENITILSDLKSSKIFALSKKYNIVNGFTFVLHDHMNNLAMLSLIMDNNA 132

Query: 153 I-----ILRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFE------LTGREVECLTW 196
                  +      + +                  V  GK+ +      L+ RE E L W
Sbjct: 133 DKGLNSRIESDKDRLQMNLIKIHEKMLMLEQNKLGVSNGKNTDTSGKGILSPRENEVLHW 192

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S GKT  EIA+I GI+  TV +++ ++++K        AI   V   ++
Sbjct: 193 ASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELELI 242


>gi|190147124|gb|ACE62927.1| global response regulator [Serratia marcescens]
          Length = 218

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C                         +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCR---------------GN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       Y   ++    +   +    P          
Sbjct: 47  AVDIVLMDMNMPGIGGLEATRKIVR-----YAPDVK---VIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   L  +    R I  D   ++ L            +      F  L
Sbjct: 99  AGYLSKGAAPQEVINALRSVHAGQRYIASDIAQQMAL---------SQLEPQAETPFSCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++GK  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMLMITKGKKVNEISEQLSLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|157374044|ref|YP_001472644.1| putative nitrate/nitrite DNA-binding response regulator [Shewanella
           sediminis HAW-EB3]
 gi|157316418|gb|ABV35516.1| putative nitrate/nitrite DNA-binding response regulator [Shewanella
           sediminis HAW-EB3]
          Length = 206

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 68/228 (29%), Gaps = 25/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + L   + LDC +             G     +++        +D  
Sbjct: 2   IRVLLVDDHPLFREGLRHRLDLDCDIEVQAEADN-----GLQALEILKDTQIDLVLMDIN 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L+  +   E             +   +       +       + Y       
Sbjct: 57  MPQMDGMYLLELIKEQEMS--------CKVVMLSMHDNKEYIVAAMRHGADGYILKDVPG 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R    D +  +            S ++  GK   +T RE   L  I
Sbjct: 109 KELIEAIKKVAAGKRYFSADVIDTL------------SQELASGKQVLVTQREQLVLRLI 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S G  +  IA  + +S  TV  +  +I +K A    +G + YA+ + +
Sbjct: 157 SLGMNNKRIAQEMNVSVRTVETHKRNIKQKLAIDCTAGLVRYAIDHGL 204


>gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
 gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87]
          Length = 209

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 76/239 (31%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQQDIEVVGEGASGKEAIEKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L     +    F    E         
Sbjct: 48  KPDLILMDLLMDDMDGVEATTEIKKD--------LPHIRVVMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +        +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIADAVRKTDQGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 224

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 25/240 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             +  + + L  +       +  L ++   L  +            +  L          
Sbjct: 1   MTVTPITLFLIDDHTLLRRGLVALLSQYGDLRVVGEAGDAAEALRLLPQL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD+ +      D +  +  +         Q    +   V     +    
Sbjct: 51  -----RPDVILLDNHLPGVRGVDAIAGLREAS--------QGSRVIMLTVSEDGEDLGAA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHW 180
                  Y   T D   +   +        ++  + + ++     +              
Sbjct: 98  LRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMPPD 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+ RE E L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 158 DPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYA 217


>gi|164504820|gb|ABY59648.1| UvrY [Yersinia ruckeri]
          Length = 218

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C         +               +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIRGIKVLGEAQCGEDAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       +   ++    +   +    P          
Sbjct: 47  SVDIVLMDMNMPGIGGLEATRKILR-----FSPDIK---VIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +      F  L
Sbjct: 99  GGYLSKGAAPQDVINAIRAVHSGQRYIASDIAQQMAL---------SQLEPQVDTPFACL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|297161527|gb|ADI11239.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 27/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IVL  ++    + +  + +    L  +                    GA    LV  
Sbjct: 9   PLRIVLADDERMVRTALRAILSSEPDLEVVGEAGT---------------GAEAIPLVHE 53

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  +       V + P  +    F             
Sbjct: 54  LRPDVVLMDVRMPEIDGIRATERILAT-------VPEPPRVIVVTTFENDSYVYDALRAG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   + L+     ++    +  +    A   +              L
Sbjct: 107 ASGFLLKRARADELVQAVRLVARSDSLLFPAAVRALAAAYATGRD-----GQAQALRDRL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  ++ G ++ EIA  L ++  TV  ++A+++ K   + R+ A+  A     V
Sbjct: 162 SEREAEVLRLMTTGLSNAEIADRLTVAPATVKTHVATVLAKLGVRDRTQAVIAAYECGFV 221


>gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +    E   GA+   LVR        +D  +     
Sbjct: 4   RVLLVDDEPLVRAGLRAVLEAQPDLEVCGEAGDGAAVVPLVRALRPDVVAMDVRMPLMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +              P  L    F              + +       A I   
Sbjct: 64  IGATRAVLAM-------AGPLPKILVVTTFENDAYVYDALRAGADGFLLKRARPAEIVHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++    +  +                       LTGRE E L  ++ G ++
Sbjct: 117 VRVVAAGDSLLFPAAVRRLA---------DHHGGRAPAPFPGLTGREGEVLRLMARGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 168 AEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210


>gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 62/231 (26%), Gaps = 17/231 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +       V   P   D +AR    D           +      +             + 
Sbjct: 4   DAAPTVMVVDDHPIWRDAVAR-DLADDGFDVVATADGVASASRRAAV----------VRP 52

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++      D     A +E         R   L         + +         Y   +
Sbjct: 53  DVVLMDMRLGDGSGAQATAEVLAVSP---RSRVLVLSASDERDDVLQAVKAGATGYLVKS 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +        +        +       A               LT RE E L
Sbjct: 110 ASRTELADAVRATAEGRAVFTPGLAGLVLGEYRRIAQQPAQEGPATP---TLTERETEIL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++++G T+ +IA  L +S  TV N++ +  RK     R     YA+ + +
Sbjct: 167 RYVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217


>gi|328883488|emb|CCA56727.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 64/223 (28%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L R  L     +D  +     
Sbjct: 3   RVLLVDDQPLIRSGFRAFLDLEDDIEVVAEAANGQEGLALAREHLPDVALVDIQMPVLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +          +     +             
Sbjct: 63  IETTRGIAA------DPALADVHVVILTNYGLDAYVFDALSAGAAGFLVKDIVPEDFLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++      ++  +  Y      +      +   LTGRE E +  ++ G ++
Sbjct: 117 VRVAARGDALLAPSITRKL--INRYVTQPLPTDTGEVLE--GLTGREREAVVLVAHGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  + +S  T   ++   M K   + R+  +  A  + +V
Sbjct: 173 DEIAAHMVVSPLTAKTHVNRAMTKLRARDRAQLVILAYESGLV 215


>gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 209

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
            +     +      VG +       DL ++ +   IV       L    A     + +  
Sbjct: 17  QLGLGQALGEQFAVVGYAEDGYGAIDLTRQLQPQVIVMDIGLPRLDGIAATQRLKREFPD 76

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           ++           +  E +   +   + YC     + R+ + +         +       
Sbjct: 77  IRVVM---LTSHQSALEAVAALSSGADAYCIKGERIERLLMAIAAAQEGATYLDP----- 128

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              +A +      S       D+ L+ RE++ L  + EG ++ EIA  L +S NTV  ++
Sbjct: 129 --QIARHVIQHLHSPQPTM--DYHLSQRELDVLKLMVEGYSNPEIAGKLFLSPNTVKTHV 184

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ K A   R  A   A+RN +V
Sbjct: 185 RGILNKLAVDDRVQAAVVALRNGLV 209


>gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus
           baarsii DSM 2075]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 67/241 (27%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +  +V+  +       +  +  +S     +            +  L             
Sbjct: 3   DKARVVICDDHAIFREGLKTVLAQSPDFTIIGEAANGFEAVETVLRL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   +D  +      +  + +A          L     +   V       +     
Sbjct: 50  --RPELVTMDIAMPEQSGIEAAKQIAAE--------LPETRVIILSVHSRKTFILEALKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y        ++      +      +         ++  +      +          
Sbjct: 100 GARGYVLKDSAGEKLVDAAKAVLRGECYLDSPVAG--HIVDEFVKMPDMTPAPAQDSQER 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + EG  + EIA  L +S+ TV N+ A+IMRK       G + YA+   +
Sbjct: 158 LTDRERQLLRLVVEGLPNREIADKLCLSQKTVENHRANIMRKLGRHDVIGLVKYAIATGL 217

Query: 246 V 246
           V
Sbjct: 218 V 218


>gi|259415201|ref|ZP_05739123.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
 gi|259349111|gb|EEW60865.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
            +L  +            +      +   H      D            S  P       
Sbjct: 9   AILEMIESSANLEEIGEVLARFRNLLEVDHVFYRWVDRSGS----ISGCSTLPVAWQDRY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTFDVAR 139
           +     +   V+      F PV     +     A                Y       A 
Sbjct: 65  SAMGYHRIDPVVIGCYTAFHPVDWRDLDWSARLAAAFRKDSLAFGVGSQGYSVPVRGPAG 124

Query: 140 IRIGLMLL----FPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVEC 193
                 +             R    ++ L+A Y            +   +  L+ RE E 
Sbjct: 125 QYAVFSITKTCKGEVWDKFTRKHSRDLILVAHYVNRRALDFEMSFYPLPEQPLSMRESEA 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L+ ++EG +    A  + IS +T+  YI     K   +  + A+A AV   ++
Sbjct: 185 LSLLAEGMSRARAAEAMDISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGLI 237


>gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 200

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDISIMDIEMPIQSGLDVAEALKKEKSP--------CKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R + ++ ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAAAIRNVMKGKREVSQELMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|119716860|ref|YP_923825.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119537521|gb|ABL82138.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 207

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 35/240 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +VL  +     + +  L + +  +  +            +  +             
Sbjct: 3   EPIRVVLVDDHAVIRAGLEQLLSGTADIEVVGTAADGAEALDVVRRI------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +         R +                 L    F      I     
Sbjct: 50  --RPDVVLMDLQMPKVDGVAATRAIMAEGLGVD--------VLVLTSFSDSERIIAALDA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     D   +  G+  +      I       +  +                   +
Sbjct: 100 GAVGYLLKDADPEDVLQGIRAVSRGESPIHPKAARALLGV------------RAGSPQVQ 147

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT + EG  + +IA  L IS  TV  ++ S   +     R+ A  +A RN +
Sbjct: 148 LTSRETEVLTLVREGLANKQIARRLDISERTVKAHLTSAFARIGVADRTQAALWAERNGL 207


>gi|253988248|ref|YP_003039604.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638760|emb|CAR67377.1| two-component response regulator. hexose phosphate transport syste
           regulatory protein uhpa [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779698|emb|CAQ82859.1| two-component response regulator. hexose phosphate transport syste
           regulatory protein uhpa [Photorhabdus asymbiotica]
          Length = 210

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + +          A+++ L+  +    +  +  E       L +  +      +D  
Sbjct: 2   IRIALIDDHVVVRSGFAQLLTLENDLEIAGQYSSANEAW-----LDLLRNPIDVAVMDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L+  +     D           +   ++ T     +        Y +     
Sbjct: 57  MPDESGLHLLTRLRQKRPDF--------RTIILSIYDTTAFVQSALDAGACGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D L  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVHKGGCYLCADALKAL-----------RQTPQDIKALQILTPREREIFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++  IA  L +S  TV+ + A+I+ K    +    + YA+++ ++
Sbjct: 158 INGISAKTIAEQLNLSPKTVHVHRANILGKLQCDSTIELVHYALQHQLL 206


>gi|161502931|ref|YP_001570043.1| response regulator [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864278|gb|ABX20901.1| hypothetical protein SARI_00990 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 218

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +                    G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEA---------------CCGEDAVKWCRTN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   V    P          
Sbjct: 47  AVDVVLMDMNMPGIGGLEATRKIARSTADI--------KVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVVNAIRSVYTGQRYIASDIAQQMALSQI-------EPAKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|270261293|ref|ZP_06189566.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044777|gb|EFA17868.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 218

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C                         +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCR---------------GN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       Y   ++    +   +    P          
Sbjct: 47  AVDIVLMDMNMPGIGGLEATRKIVR-----YAPDVK---VIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +      F  L
Sbjct: 99  AGYLSKGAAPQDVVNAIRSVQAGQRYIASDIAQQMAL---------SQLEPQTETPFSCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++GK  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|238763420|ref|ZP_04624383.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238763501|ref|ZP_04624463.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238698283|gb|EEP91038.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238698364|gb|EEP91118.1| Two-component response regulator [Yersinia kristensenii ATCC 33638]
          Length = 210

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S+  + +            +                 + 
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSNEFSTIYESVDGSEALETLK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 212

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 29/234 (12%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R D+ R   V         L      +  +     +       GA      R       
Sbjct: 5   VRSDKIRILLVDDHMVMRMGLVTATSDEPDMEVVADVEN-----GAEAIEAYRAHRPDVV 59

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +      D +R +                 L    +    E         + +  
Sbjct: 60  VLDLRMHGMSGVDAIRALRSE--------FGNVRVLVYSNYAAGEEVYQALKAGASGFVV 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               + R+   +  +    + +  +       +A                  +L+ RE++
Sbjct: 112 KEMALERLLEAIRKVHAGEQYVPPE-------IAMRMGERLM---------AQLSPRELD 155

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++G+++ EIA  L +   T   ++A+I+ K     R+ AI  AVR  I+
Sbjct: 156 VLKLVAKGRSNKEIAAELHVVEGTAKIHVANILTKLGVSDRTQAIVVAVRRGII 209


>gi|300716154|ref|YP_003740957.1| Response regulator protein [Erwinia billingiae Eb661]
 gi|299061990|emb|CAX59106.1| Response regulator protein [Erwinia billingiae Eb661]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +              C         A               +
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGFQVTGEASCGEDAVKWCRA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       Y   ++    +   +    P          
Sbjct: 47  SVNVVLMDMNMPGIGGLEATRKIVR-----YSPDIK---VIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQEVVNAIRQVNAGQRYIASDIAQQMALSQI-------EPQTSDSPFDSLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVADISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|302867924|ref|YP_003836561.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315505671|ref|YP_004084558.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570783|gb|ADL46985.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412290|gb|ADU10407.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 10/220 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDL 86
           +  R++  D           +    G              D  +  + D ++      +L
Sbjct: 1   MTVRVVVADDQALVRTGFRMILTAGGVDVVAEAATGAEAVDAVRRTRPDVVLMDVRMPEL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A          +  P  +    F          A   + +         +   + +
Sbjct: 61  DGLEATRRILTGA--VAAPRIIILTTFDLDQYVYAALAAGASGFLLKDVTPEHLVAAVRM 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++       +    A +                LT RE E L  ++ G ++ E+
Sbjct: 119 VQDGDALLAPAITRRLVRRFARR---DPQTATVHRDLATLTRRETEVLRLLAGGLSNAEL 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S  TV  ++A I+ K   + R  A+  A    +V
Sbjct: 176 AEALHLSEATVKTHVARILAKLRLRDRVQAVVVAYETGLV 215


>gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 14/231 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLD 75
            +  +  + +    D       +   +     +  + E   GA    + R +      LD
Sbjct: 13  ARGAAAPTRILLADDHALVRRGVRLILDGEPDLTVVAEAGDGAEAIEMARREQPDLVILD 72

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         R +          V+     L   ++                Y   + 
Sbjct: 73  IAMPRLTGLQAAREL--------SRVMPGLRILMLTMYDNEQYFFEALKAGAAGYVLKSV 124

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +             +    +  +        +  K  +    +    T RE E L 
Sbjct: 125 ADRDLVEACRAAMRDEPFLYPGAVTALI---RNFLDRAKDGEDLPARAI--TEREEEILK 179

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG +S EIA +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 180 LVAEGHSSKEIAELLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230


>gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
 gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis
           BMB171]
          Length = 200

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALELIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKSS--------CKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R + +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAAAIRNVMKGKREVSQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 200


>gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14]
 gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14]
          Length = 209

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQQDIEVVGEGASGKEAIEKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L     +    F    E         
Sbjct: 48  KPDLILMDLLMDDMDGVEATTEIKKD--------LPHIRVVMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   + +  +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIADAVRKTYQRESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|238898617|ref|YP_002924298.1| UvrY transcriptional regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466376|gb|ACQ68150.1| UvrY transcriptional regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 218

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 73/238 (30%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      +                G +     R +
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIRGIKVAGEAE---------------CGENAVKWCRSN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +       +   ++    +   +    P          
Sbjct: 47  PIDVVLMDMSMPGIGGLEAIRKILR-----FSPGVK---VIMLTIHTENPLPAKVMKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   +I L  ++                 L+
Sbjct: 99  SGYLSKGAAPKEVISAIRAVHSGQRYIASDIAQKIAL--SHI------EPPPSTPFCCLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  T+N+Y   +  K            A+++ +
Sbjct: 151 DRELQIMLMITKGQKVNEISQQLHLSPKTINSYRYRLFNKLNISGDVALTHLAIKHGL 208


>gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 189

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 63/211 (29%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVVGQAENGEEALKLIEKLQPDVSIMDIEMPIQSGLDVAETLQKQKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  S--------CKVMMLTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            + ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 PELMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 264

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 70/243 (28%), Gaps = 26/243 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIP---LDCTVSWTMRMYALTEYVGASHFL 62
           QQ +I++     +R   V   P   D +  ++        V     M   ++  G     
Sbjct: 37  QQESIMVVERKCERVLVVDSHPIVRDGIEVVLGKAYAGIDVDGAADMAEASDRCGRD--- 93

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD ++  + P   +  +                 +      +       
Sbjct: 94  -----RPDLVLLDVMLPGEDPLPAMGEILR--------AHPGLRFVVFTALGSEARAADA 140

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y         I   +  +      I          L   +             
Sbjct: 141 IRFGASGYLLKWCSPDGIVQAIRRVMAGRVHIDPS-------LDEARVASAAGGRTLASP 193

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R
Sbjct: 194 VDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYR 253

Query: 243 NNI 245
              
Sbjct: 254 YGY 256


>gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +    E   GA+   LVR        +D  +     
Sbjct: 4   RVLLVDDEPLVRAGLRAVLEAQPDLEVCGEAGDGAAVVPLVRALRPDVVAMDVRMPLMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +              P  L    F              + +       A I   
Sbjct: 64  IGATRAVLAM-------AGPLPKILVVTTFENDAYVYDALRAGADGFLLKRARPAEIAHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++    +  +                       LTGRE E L  ++ G ++
Sbjct: 117 VRVVAAGDSLLFPAAVRRLA---------DHHGGRAPAPFPGLTGREGEVLRLMARGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 168 AEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFV 210


>gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 221

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 74/237 (31%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  + E     +  L +    +  +           ++ AL               
Sbjct: 14  IRIFLLDDHEVVRRGLRDLLSEEPDIEIVGEAGRADEALEQIMAL--------------- 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      ++ R +  ++      +L          F       T      
Sbjct: 59  RPDVAVLDARLQDGSGIEVCRQVRSNDSGIACLIL--------TSFDDEDALFTAIMAGA 110

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +  +     ++  +    +           +       +   LT
Sbjct: 111 AGYVLKQIRGAALVDAVRRVAAGQSLLDPEVTPRVLY-------RLRQGPAEDERLAGLT 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A +  
Sbjct: 164 DQERRILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLESRTQAAVFATKLG 220


>gi|240142741|ref|YP_002967254.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Methylobacterium extorquens AM1]
 gi|240012688|gb|ACS43913.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Methylobacterium extorquens AM1]
          Length = 220

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 59/244 (24%), Gaps = 32/244 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + L  +     + +  L      +  +                            
Sbjct: 1   MDRIRVALADDHPIVLAGIRTLLNADPEIELVGEATSGSD-------------------- 40

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +      D  V       L                +        V            
Sbjct: 41  ALPMIHSAGPDVAVVDVSMPGLNGLELTERVAGECPGTRVL---VLTVHEDAAYVQPLLR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +   G  +          +A +      S       + 
Sbjct: 98  AGARGYLLKRSAADDLLRAVRAVASGGIYLDPS-------IAGHALADPSSVGGPGPGEA 150

Query: 185 E--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E L  I++G ++ EIA  + +S  +V  Y A    K   +TR+  I YA  
Sbjct: 151 GEALSPRETEVLRLIAQGFSNKEIARRIDLSVKSVETYKARAAEKLGLRTRAEIIRYAAA 210

Query: 243 NNIV 246
              +
Sbjct: 211 QGWL 214


>gi|229822479|ref|YP_002884005.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568392|gb|ACQ82243.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 222

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  V+  +     S +  L  R++ +      D                GAS   LVR  
Sbjct: 3   IRAVVVDDQALVRSGLRALLERAEDIEVAGEADD---------------GASGVRLVREL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L+    +    F      +       
Sbjct: 48  RPDVVLMDIRMPGVDGLEATRRIVA------SPELRDVRVIVLTTFDDDELVLGAIRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +R  + ++     ++       +    A    +         +   +T
Sbjct: 102 AAFLLKDASPEDLRAAVRVVAAGDALLAPAVTRTVLARVAASTGVDADATARLDR---IT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++DEIA  L +S  T   Y++ ++ K   + R+  +  A    +V
Sbjct: 159 DREREVLAAVARGLSNDEIAGELFLSPATARTYVSRLLTKLDARDRAQLVVLAYEAGLV 217


>gi|227497046|ref|ZP_03927297.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833464|gb|EEH65847.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 222

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 70/233 (30%), Gaps = 17/233 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQK 73
           +   RT+    L    D       +   +S    +  + E   G    ++ +        
Sbjct: 3   DSAARTTV--RLLVVDDHPVVRSGIIGMLSREPDLEVVAEAGDGQEAVVMAQRWRPDVVL 60

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +              P  +    + T  + +         Y   
Sbjct: 61  MDLRMPVMDGVEATRLITAEA--------DAPKVVVLTTYDTDSDILRAVEAGATGYLVK 112

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 I   +         +       I       A   +S          L+ RE E 
Sbjct: 113 DSPREDIAGAVRSAVRGYSAMSPAVTTRI------LAATRRSAAAPSDTAPALSPREREV 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ +IA  L IS  TV  ++  +  K    +R+GA+  A+R  ++
Sbjct: 167 LAAVARGMSNAQIARELLISEATVKTHLLRVNNKLGVDSRTGAVMEALRQGLI 219


>gi|256396759|ref|YP_003118323.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362985|gb|ACU76482.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 61/224 (27%), Gaps = 12/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G+     +         +D  +     
Sbjct: 3   RILLVDDESLVRAGLRTILESAEDLRVVAEAEDGSQVVDALAAHRPDVVLMDVRMPRVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +  +       V+          F                +         +   
Sbjct: 63  LEALRRVQAT--PDPPPVV------MLTTFDLDAYIFEALRRGATGFLLKDTPPRDLISA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202
           + ++     ++       +  L  Y             K   ELT RE + L  ++ G +
Sbjct: 115 MRVVARGDAMLSPPVTKRL--LDHYTGLRVADRAEQAVKLLAELTPRERDVLAELARGLS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L +S  TV  +++ +M K     R  A        ++
Sbjct: 173 NAQIGKSLFLSEATVKAHVSRVMAKLGVANRVQAALVGRDAGLL 216


>gi|226306403|ref|YP_002766363.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226185520|dbj|BAH33624.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 211

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 71/238 (29%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ +  + D +  +                    GAS   + R  
Sbjct: 2   ITVALADDHATIRSGLAMILRQHDDIDVVAEAGD---------------GASAITVTRTH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +          R   L    F              
Sbjct: 47  QPDVVLMDVRMPGTDGIEATRQIIGTT---------RSRVLVLTTFDLDEYVFAALRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   T     +   +  +     ++         L+  +     K  +       ELT
Sbjct: 98  SGFLLKTATADELTNAIRNVAAGDAVLAPRAAR--ALIGEFVQRAPKPTEPL--GLSELT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  +  G ++ E++  LG+   TV ++++ ++ K    +R  A   A    +
Sbjct: 154 DREREVLALLGTGMSNAELSRELGVGAPTVKSHVSRVLSKLHLTSRVQAAILARELEL 211


>gi|82544573|ref|YP_408520.1| transcriptional regulator NarP [Shigella boydii Sb227]
 gi|81245984|gb|ABB66692.1| nitrate/nitrite response regulator [Shigella boydii Sb227]
 gi|320185869|gb|EFW60619.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC
           796-83]
 gi|332093584|gb|EGI98642.1| response regulator [Shigella boydii 3594-74]
          Length = 215

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPSFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 70/224 (31%), Gaps = 15/224 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     +  + E  G      +VR        +D  +S     
Sbjct: 19  VVLVDDQAVIRAGFRILLEENDDITVVGEASGGREAVRVVRATRPDVVCMDLRMSEGDGL 78

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +    +     VL          F    +         + +     +   +   +
Sbjct: 79  TATRQIVAEREGGVPAVL------VVTTFDMDADVFGALEAGADGFILKDCEPEELVDAV 132

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKT 202
             L     ++ +     +       A   +       ++    LT RE E +  ++ G +
Sbjct: 133 RRLASGYGLVDQSVTRRV------IAEFARRQGRVENREALGVLTEREREVVQLLAGGMS 186

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +  +TV +++  I+ K   + R  A+ +A RN +V
Sbjct: 187 NAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGLV 230


>gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 210

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 67/241 (27%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +  ++ I++  +       +  L      L  +   +           L+         
Sbjct: 1   MDQPKLTIMIVDDHPLMRRGIRQLLALEPRLQVVAEANNGTEALAEARRLS--------- 51

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      D ++ +   E             L   V     +    
Sbjct: 52  ------PDVILLDLNMKGMSGLDTLKALRHEEIS--------ARILVLTVSDARNDIYAM 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   ++       +                     +       
Sbjct: 98  IDAGADGYLLKDSEPELLLQQILSGAQGETVFSEV-----------VEEYLANRPHSANP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE++ L  ++ G ++ EIA  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 FRELTERELDVLQEVARGLSNKEIATTLHISEETVKVHIRNLLRKLDVRSRVAATVLWLE 206

Query: 243 N 243
           +
Sbjct: 207 S 207


>gi|254392026|ref|ZP_05007217.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814548|ref|ZP_06773191.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442938|ref|ZP_08217672.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705704|gb|EDY51516.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327147|gb|EFG08790.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 233

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 28/238 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQ 70
           L  +     + V     R++                 +  + E         ++     +
Sbjct: 21  LVDDHRMFRTGVQAEIGRTE--------------QTGVEVVGEAADVDQAVTVITSTRPE 66

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      +++R  A         V      L   V     + I    G    Y
Sbjct: 67  VVLLDVHLPGGGGVEVLRRCATLMASADSPV----RFLALSVSDAAEDVIGVIRGGARGY 122

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTG 188
            + T     +   +  +     +           LA +  + F S D     +    LT 
Sbjct: 123 VTKTITGTDLVDSIFRVQEGDAVFSPR-------LAGFVLDAFASTDAPPVDEDLDRLTQ 175

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    +V
Sbjct: 176 REREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 233


>gi|149908474|ref|ZP_01897137.1| Response regulator [Moritella sp. PE36]
 gi|149808637|gb|EDM68572.1| Response regulator [Moritella sp. PE36]
          Length = 214

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +  +  +                 G       R +
Sbjct: 2   INVFLVDDHELVRTGIRRILEDVRGIKVVGEV---------------SCGEDAVQFCREN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +  D           +   +    P          
Sbjct: 47  QPDVILMDMNMPGIGGLEATRKILRNNPDI--------KIIVLTIHTEEPFPSKVMQAGG 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y + +     +   +  +    R I  +   ++ L         +           L+
Sbjct: 99  SGYLTKSAAPDEVLGAIRKVHSGQRYIAPEIAQQMAL--------SQFSSASENPFQNLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +IA  L ++  TVN Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMMMITKGQRVVDIAEQLHLNSKTVNAYRYRLFSKLNINGDVELTHLAIRHGIL 209


>gi|134098494|ref|YP_001104155.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003289|ref|ZP_06561262.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911117|emb|CAM01230.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 235

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 67/244 (27%), Gaps = 27/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +     IV+  +     + +  L +    L  +       +    +             
Sbjct: 1   MQPSDTTIVVADDQAMIRAGLVALLSAEPDLRVLAEAADGQAAVAAVQR----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +         R +             + + +   V          
Sbjct: 50  ----RRPDVVLMDVRMPGVDGITAAREIV-------DITDGQTSVIMLTVHDLDEYVYAA 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +         +   +  +     ++       +    A         +     
Sbjct: 99  LRAGASGFLLKDAPPEELVRAVHTVAAGDALLAPRVTRRLLQRFASLGVRDAGTE----- 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  +++G ++ EIA  LG++  TV +++  +M+K    +R+  +  A  
Sbjct: 154 LSGLTDRERDVLLEVAKGGSNAEIARNLGLAELTVKSHLYHVMQKLHLNSRTQLVITAYE 213

Query: 243 NNIV 246
             +V
Sbjct: 214 TGLV 217


>gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T]
 gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301]
 gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401]
 gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 2457T]
 gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri
           2a str. 301]
 gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401]
 gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017]
 gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70]
 gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671]
 gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71]
 gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71]
 gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218]
 gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304]
          Length = 215

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEA---------------GEGASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|37519917|ref|NP_923294.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210909|dbj|BAC88289.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 210

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 17/221 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     M  + +   G     L    L     +D  +     
Sbjct: 3   RLLLVDDQPLFREGLADLLLLEEDMQIVGQAGHGQEAITLAMQLLPDVILMDVRMPVCDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F      +         Y   +    ++   
Sbjct: 63  VEATRQIHQRYPWI--------RILVLTTFDEDEYILQSLQAGALGYLLKSTPARQVASA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  L      +          +AA   +  ++      + F+  + RE+E L  I +GK 
Sbjct: 115 IRTLHQGHSQLGP-------TIAARVFSQLQNPPARKPESFQQFSERELEVLGLIGQGKN 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EIA  L ++  TV N++  I+ +   + R+    +  R+
Sbjct: 168 NREIAQALHLTEGTVKNHVTRILAQLGLRDRTQLALWTHRH 208


>gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L      +  +                    G     +    
Sbjct: 20  IRVLVVDDHPPMRVGLVALIRSQPGMDVVAEASD---------------GEEAIEIYDDL 64

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +  +                 +    +    +         
Sbjct: 65  QPDVVLMDLRMPGMGGVEAILAIRKKA--------PEARVIVLSTYDWDEDIHRALQSGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  I   +  ++     + R     +   A                  +LT
Sbjct: 117 KSYLLKDMPIEEIASTVRAVYAGDTSLPRSVAERLTERAQR---------------EQLT 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  + +G+++ EIA  L IS +TV +++ ++  K   + R+GA   A+R+ IV
Sbjct: 162 ERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDRTGAAIEAIRHGIV 220


>gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
          Length = 222

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D L   + +   +  +     ++   G     LV          D  +     F+
Sbjct: 5   LLVVDDDLGTRLSISDYLEMSGYF-VISATNGQEALQLVEKHQPHLIVTDIAMPEMDGFE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+ +            +    +F     +  E I       + Y    F++  + + + 
Sbjct: 64  LVKRVRSQ------PGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIR 117

Query: 146 LLFPKGRIILRDRLWEI-GLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKT 202
            L  + ++I  +    I   L+ + ++  K +        +  LT RE + L  ++EG +
Sbjct: 118 SLLERSQLIEAEWRSRINEPLSNHTSSSHKRHHFHSLSTTNIHLTEREQQVLNLLTEGLS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L +S  TV  Y++S++RKT +  R+  + +A+ N+++
Sbjct: 178 NIKIGDSLHLSSRTVEKYVSSLLRKTDSSNRAELVRFALENDLI 221


>gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
          Length = 200

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLXASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|330445311|ref|ZP_08308963.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489502|dbj|GAA03460.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 208

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 24/224 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + +++ ++                G     L          LD  + 
Sbjct: 6   VMIVDDHPLMRRGIGQLLSMESDFQLVGEASN-----GNDAIALAHEQSPDLILLDLNMK 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  M                 +   V  +  +  T      + Y     +   
Sbjct: 61  GMSGLDTLNAMRNEGI--------LACIVVLTVSDSRSDIKTLLNAGADGYLLKDTEPDE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L      G+                                +LT RE++ L  +++
Sbjct: 113 LIELLKSALCGGKAYSAV-----------VKECLAEQHSTDDMLSQLTERELQILQEVAK 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G+ + +IA  L IS  TV  ++ S+++K   K+R+ A    + +
Sbjct: 162 GQRNRQIAEQLFISEATVKVHMKSLLKKLQVKSRTAATILYLES 205


>gi|29829419|ref|NP_824053.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606526|dbj|BAC70588.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 213

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 16/227 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 2   IRVLVAEDQSAVRAGLVLILRSAPDIDVVGEA-----ADGEQAVALARELRPDLVLMDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F                +     + 
Sbjct: 57  MPRLDGVSATRRVVAENLAD---------VLVLTTFDLDEYVFGALRAGACGFLLKNTEA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  +     +I       +  +A + A   +           LT RE E L+ +
Sbjct: 108 RQLLEAVRTVARGEGLISPAVTRRL--IAEFAAKPVREPGPDPVILDVLTRREREVLSCL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    
Sbjct: 166 GRGMSNAEIAARLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 212


>gi|110642402|ref|YP_670132.1| transcriptional regulator NarP [Escherichia coli 536]
 gi|191170199|ref|ZP_03031753.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215487411|ref|YP_002329842.1| transcriptional regulator NarP [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559110|ref|YP_002392023.1| transcriptional regulator NarP [Escherichia coli S88]
 gi|218690355|ref|YP_002398567.1| transcriptional regulator NarP [Escherichia coli ED1a]
 gi|306814694|ref|ZP_07448856.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|312967493|ref|ZP_07781708.1| response regulator [Escherichia coli 2362-75]
 gi|331658272|ref|ZP_08359234.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
 gi|110343994|gb|ABG70231.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           536]
 gi|190909715|gb|EDV69300.1| nitrate/nitrite response regulator NarP [Escherichia coli F11]
 gi|215265483|emb|CAS09885.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218365879|emb|CAR03621.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli S88]
 gi|218427919|emb|CAR08839.2| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli ED1a]
 gi|281179284|dbj|BAI55614.1| nitrate/nitrite response regulator [Escherichia coli SE15]
 gi|294492603|gb|ADE91359.1| DNA-binding response regulator, LuxR family [Escherichia coli
           IHE3034]
 gi|305852088|gb|EFM52540.1| transcriptional regulator NarP [Escherichia coli NC101]
 gi|307554259|gb|ADN47034.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           ABU 83972]
 gi|307626269|gb|ADN70573.1| transcriptional regulator NarP [Escherichia coli UM146]
 gi|312287690|gb|EFR15595.1| response regulator [Escherichia coli 2362-75]
 gi|312946814|gb|ADR27641.1| transcriptional regulator NarP [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320196066|gb|EFW70690.1| Nitrate/nitrite response regulator protein [Escherichia coli
           WV_060327]
 gi|323188081|gb|EFZ73376.1| response regulator [Escherichia coli RN587/1]
 gi|323951986|gb|EGB47860.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955960|gb|EGB51713.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|330912024|gb|EGH40534.1| nitrate/nitrite response regulator protein [Escherichia coli AA86]
 gi|331056520|gb|EGI28529.1| nitrate/nitrite response regulator protein NarP [Escherichia coli
           TA206]
          Length = 215

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDSGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 12/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSW-TMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            T     +    D    +  L   ++    R+  + + VGA         +  + + D +
Sbjct: 1   MTGGPVRIVLVDDHEMVIEGLKAMLATYADRVAVVGQAVGAER----AIGVVADLRPDIV 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +               E        +        V+              + Y   +   
Sbjct: 57  LCDVRMQGASGLDLCLELRGRDPDQKVVM---LSVYDDEQYLFQALRVGASGYLLKSISS 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L L       I           A   A   +  +   G    LT RE E L+++
Sbjct: 114 DELVRQLELAHRGQTAIDPGMAAR----AVDTAARLQRDEFWPGARQGLTQRESEILSFV 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G ++  IA  L I   TV  ++ SI RK     R+GA+A A+R  I
Sbjct: 170 VTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATALREGI 217


>gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 245

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 13/236 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSS 80
           +        + R++ +D        + A  E  G      V  +      +Q L  +V +
Sbjct: 9   TDEQEAPPPVPRLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLPDVVIT 68

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D     +    L +K +    L     +F        +         + Y    FD   +
Sbjct: 69  DVMMPRLDGYGLLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDEL 128

Query: 141 RIGLMLLFPKGRIILRDRLW----EIGLLAAYQ---ANMFKSYDVHWGKDFE---LTGRE 190
              +  +  + + +L++       ++G +A       ++    +    K+      T RE
Sbjct: 129 VARVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSKEPVVHSFTPRE 188

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 189 ASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4]
 gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis
           G4]
          Length = 260

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 77/229 (33%), Gaps = 18/229 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEY---VGASHFLLVRWD----LFQEQKLDSIVSSDWPFDLVR 88
           +         +    +L +    +G   + + R        +       + + +P + V+
Sbjct: 31  LSLFTDAKDISSLSDSLGDAVLPLGFPCYAVTRIALTCYRSRPSISMEAICTHYPNNWVQ 90

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAGMDNRYCSLTFDVA 138
                       V +       P                      AG+ N       ++ 
Sbjct: 91  HYLQHNYGAVDPVHRAAFTSSGPYRWADITDLSQNERHVLAEACDAGLKNGLSIPIREIG 150

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWI 197
              + + L  P  RI    +     +++                +F +L+ R+ +CL+W+
Sbjct: 151 GSILLINLSGPSSRINTGTKRQLASVISNLFRLELDRLAPPHPNEFIQLSPRQRQCLSWV 210

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++GKTS +I +IL ISR+TV  +I   MR     +R  A   A    ++
Sbjct: 211 AQGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAVIASNYGLL 259


>gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
 gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp.
           Tu6071]
          Length = 215

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  ++    + +S +      +      D           L                 
Sbjct: 1   MLVVDDEPVIRAGLSAILDSQADITVAGTADDGEEAVEACARL---------------RP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +        +  +             R   L    F          A   + 
Sbjct: 46  DVLLMDIRMPRRDGLWALAELGRRGLL----GPGRSRALMLTTFDLDAYVDDALAAGASG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +         +   +         +       I  +  + +   +  D    +  +LT R
Sbjct: 102 FLLKNSSYEELTGAVRAAAAGHSALSPAVTQRI--IEGHLSGRRRPSDQDLARLRDLTER 159

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EV+ L  I +G ++ EIA  L +S +TV  +++ ++ KT  ++R+ A   A 
Sbjct: 160 EVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSRVLTKTGCQSRAQAAVLAR 211


>gi|307332179|ref|ZP_07611263.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306882168|gb|EFN13270.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 8/223 (3%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V     M  + E   GA    + R        +D  +      
Sbjct: 5   VLLADDQALLRSAFRVLVDSEADMEVVGEASDGAQAVEIARTRGADVVLMDIRMPGTDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +           L     +    F      +       + +     +   +   +
Sbjct: 65  AATRMITE------DPRLADVRVVMLTTFEVDEYVVDSLRAGASGFLGKGAEPDELLAAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTS 203
            +      ++       +      Q +           +   LT RE E L  +  G ++
Sbjct: 119 RIAAAGEALLSPVATKGLIARFLAQGDGSGDEGAYDAARLDALTVREREVLVQVGGGLSN 178

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  L +S  TV  ++   M K   + R+  +  A    +V
Sbjct: 179 DEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGLV 221


>gi|288919617|ref|ZP_06413946.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349015|gb|EFC83263.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 233

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 9/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     M  L T   G     LV         +D  +      
Sbjct: 20  VLLVDDQELFREGVRVIIDAQPGMRVLGTAADGREAVGLVDDLRPDVVLMDIRMPEMDGV 79

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +      +     +    +    F+      T      + +       A++R  +
Sbjct: 80  EATRQIFA--PARVARRTKPVRLIMLTTFNLDDRAATAIRYGASGFLLKDTTPAQLRDAI 137

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++      ++  L  ++          +G    LTG+E E    +  G ++ 
Sbjct: 138 RTVHTGNAVLAP---RDLTSLLDHEFRAPAQPPAAFGS---LTGKEREVFFAVVRGLSNT 191

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA ++  S +TV  ++ +I+RK A + R   + +A  + +V
Sbjct: 192 EIARLVFASESTVKTHVGAILRKLALRDRVQIVVFAYEHGVV 233


>gi|260431508|ref|ZP_05785479.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415336|gb|EEX08595.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           S +L  +               L   +   + +    D   +Q       + +     + 
Sbjct: 8   SQVLEDLENSSTLDELGAVAERLRNALKIDNIVYHWVDGAGDQYG----CTTYSDSWAQR 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAG-MDNRYCSLTFDVA 138
                  +   V+    + F PV                      G  +  +        
Sbjct: 64  YRERNYHRIDPVILGCFQRFHPVDWKSLDWSGKAVRAFLQDALEHGVGNQGFSIPIRGPN 123

Query: 139 RIRIGL----MLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVE 192
                          + +  +     ++ L+A Y          +        L+ RE++
Sbjct: 124 GQFALFTANHSCSDAEWQNFIAKYGRDLILIAHYFNRKALEFEQNRRPDSPRALSPREID 183

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +T ++ G +  ++A  L IS +T+  YI S   K      + AIA A+   ++
Sbjct: 184 AMTLLALGYSRAQVAHSLSISEHTLRVYIESARAKLGALNTTHAIATALSRGLI 237


>gi|134103671|ref|YP_001109332.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291004794|ref|ZP_06562767.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916294|emb|CAM06407.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + +   G     + R        +D  +     
Sbjct: 3   RVLIADDQEMVRAGFRMILESQGTIEVVGDVANGVDAVRVAREKRPDVCLMDIRMPGIDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + +A                +    F          A   + +       A +   
Sbjct: 63  LEATKRLAGPGVTDP------VKVVVVTTFDLDEYVDAALANGASGFLLKDAGPALLIEA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +  L  +  +  +          ELT RE++ +   ++G T+
Sbjct: 117 IQAAVRGDALVSPQITVRL--LKHFSQSRERVRSAVAPPKEELTERELQVVRATAKGLTN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +S +TV  ++A+   K   + R    A+A R+ ++
Sbjct: 175 TEIGRELFMSLSTVKTHLAAAQAKIGARNRVETAAWAWRSGLM 217


>gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 242

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 14/227 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
           +R++ +D        +    E  G    + V  +      +     ++ SD         
Sbjct: 15  SRILLVDDEPGLRTAVKTFLEDEGFEIIIAVDGEDGWEKAQTIFPDLIISDVMMPRANGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L +K +    L     +F        +         + Y S  FD   +   +  +  +
Sbjct: 75  DLLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 151 GRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISE 199
              +L++       ++  +A     +          + E        T RE   L  ++E
Sbjct: 135 QERLLKEAARFADIDVSKMAKQITEIKSMLTDQNQTNPENKINLPSFTPREASVLQLVAE 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++V
Sbjct: 195 GLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|323495672|ref|ZP_08100743.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323319307|gb|EGA72247.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 214

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      +          +               +
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMNVAGEAESGEEAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVILMDMNMPGIGGLEATKKILRFNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHGML 209


>gi|318060080|ref|ZP_07978803.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080793|ref|ZP_07988125.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 58/223 (26%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA      R        LD  +     
Sbjct: 27  RVLLADDHALVRRGLRLILDAEPDLTVVAEAGDGAEAVEQARLHRPDLAVLDIAMPRMTG 86

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     +   ++                Y   +     +   
Sbjct: 87  LQAAREL--------SRALPGLRMIVLTMYDNEQFFFEALKAGAGGYVLKSLADRDLIEA 138

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     +       +                       LT RE E L  ++EG +S
Sbjct: 139 CRAAMRDEPFLYPGATGAL----IRNYLDQARRGEEPAGGSTLTPREEEILKLVAEGHSS 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA +L IS  TV  + A+ + K   K R     YA+R  +V
Sbjct: 195 KDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 237


>gi|229822019|ref|YP_002883545.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567932|gb|ACQ81783.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 211

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 55/225 (24%), Gaps = 25/225 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D L  M   D                GA   +           +D  +   
Sbjct: 6   IVDDHPVVRDGLRSMFGADPRFEVVGEARD-----GAEAVVAGERLRPDVILMDLRMPGV 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  +                 L    + T  + +         Y         + 
Sbjct: 61  DGVTAIGELTQRGVT--------ARVLVLTTYDTDSDVLPAIEAGATGYLLKDAPRDELF 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++       +               +       L+ RE+E L  ++ G 
Sbjct: 113 RAVEAAAQGQAVLSPAVATRLM------------GQMRQPAPEPLSRRELEVLELVARGS 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ + A  L IS  TV  ++     K     R+ A+A A     +
Sbjct: 161 TNRDAAKHLFISEATVKTHLLHAYAKLGVNDRAAAVATAFSRGYL 205


>gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 209

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALT-----EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           +  R++  +  +     + AL      E +G +       D+ +  K D ++       L
Sbjct: 1   MPIRILIAEDQLLVRQGLAALLKAENVEIIGEAEDGGSAVDMAKSLKPDIVLMDLSMPGL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A     +    ++        + +         A   + Y         +   +  
Sbjct: 61  DGVEATRRLKRAAPQIRVL---ILTIANCERRVAEALAAGADGYALKRLGHEELMSAINS 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    + +      E+           +  D        LT RE+E L  I++G  + EI
Sbjct: 118 VRMGRQYLGPGLDVELVR---------EHLDGGEANVPSLTAREMEVLRLIAQGLKNREI 168

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L I+  TV  +   IM+K      +    YA+R  ++
Sbjct: 169 ADTLSIAIKTVETHRTKIMQKLDLHNSAELATYAIRRGLI 208


>gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 19/217 (8%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
              +  L E++                 L      ++P +           +    + + 
Sbjct: 22  LTFIDQLCEHMDFDFASYATMSPVTGSVLGYA---NYPDEWKMHYMRMNLHRVDPTIHQS 78

Query: 106 TELFCPVFHTLPEN---------ITPPAGMDN-RYCSLTFDVARIRIGLMLLF----PKG 151
                PV  T                  G+ +                L +       + 
Sbjct: 79  ARSIAPVDWTRLSRGESFNSVFYRANDFGLTDQGLTVPVRGPFGDVGLLSVTRSCSEREW 138

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +++ RD++ E+ + A +  +     D      +   L+ RE E L W + GKT  +I  I
Sbjct: 139 KLLTRDKISELQMAAVHLHDSVMQSDVLSRALRRPSLSARETEVLQWTAIGKTQQDIGDI 198

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  ++ S   K    T   A+  A+   I+
Sbjct: 199 LSISHRTVEVHMRSAREKLGALTTIQAVGRAIGYQII 235


>gi|307131662|ref|YP_003883678.1| Response regulator of the two-component transcriptional regulatory
           system UvrY-BarA (ExpA-ExpS, GacA-GacS) [Dickeya
           dadantii 3937]
 gi|306529191|gb|ADM99121.1| Response regulator of the two-component transcriptional regulatory
           system UvrY-BarA (ExpA-ExpS, GacA-GacS) [Dickeya
           dadantii 3937]
          Length = 218

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      L  +    C                         +
Sbjct: 2   ISVFLVDDHELVRAGIRRILDDIKGLKVVGEAQCGEDAVRWCR---------------NN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       +   ++    +   +    P          
Sbjct: 47  SADVVLMDMNMPGIGGLEATRKIVR-----FSPEIK---VIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +       E L
Sbjct: 99  AGYLSKGATPEEVICAIRSVHAGKRYIASDIAQQMAL---------SQLEPQAETPLECL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMMMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIRHGL 208


>gi|294102876|ref|YP_003554734.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617856|gb|ADE58010.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 58/223 (26%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G S              +D  +     
Sbjct: 4   RIIVADDHPVTRKGLSSVLENIESFQVVAETGDGRSTVEAALSHSPDVIIMDISMPDMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +             R   +   +           A     Y     D+  +   
Sbjct: 64  LEATRAICREN--------DRIKIIALSIHSNKHYVREMFAAGATGYLLKNCDIDEVIKA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGK 201
           +  +      +         L +    +  K             LT RE E L  +++G 
Sbjct: 116 INAVCEGEMYL------CTALTSTVLQDYVKRSTNASSSTMLELLTPREKEILLLLAQGF 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            + EIA  L ISR TV  + A  M K    + +    +A R  
Sbjct: 170 ATKEIASQLSISRKTVETHKARTMEKLGLYSVAELARFAEREG 212


>gi|192290074|ref|YP_001990679.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283823|gb|ACF00204.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 29/242 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ + +  +     S +  L      L  +       +   R   L             
Sbjct: 12  SRLRVFIADDHPVVLSGMKALVAGDPGLEVVGEASDGPNALRRATEL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      ++ R                   L   V             
Sbjct: 59  --KPDVAVLDLSMPGLNGIEVARKFLA--------ACPDCRVLVLTVHEDGAYLRQLLDL 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDF 184
               Y         +  G+  +   G  +        IG    +  N             
Sbjct: 109 GVAGYVLKRSATEELIRGIHAVGSGGIYLDPAIAGRAIGRTTPHLHN-----GDEHNAVS 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L   + G ++  IA  L I   +V  Y A  M K     R   + +A+   
Sbjct: 164 ELSTREIEVLRLAAIGHSNKTIAAKLQIGAKSVETYKARGMAKLGFHNRVEVVRFALSMG 223

Query: 245 IV 246
            +
Sbjct: 224 WL 225


>gi|307825893|ref|ZP_07656108.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307733012|gb|EFO03874.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 214

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  L   ++ ++ +            + AL+              
Sbjct: 2   ISVLLVDDHELVRTGIESLLNDAEDISVIGVAKSGEEAVDTVVALS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   + +    ++        P+ H L           
Sbjct: 48  -PDVVLMDVNMPGIGGVEACRRILQQDAEVK--IIALSVHNDGPIPHQLL------KLGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S    V  + + +  +    R +  +    +                +      L+
Sbjct: 99  LGFISKGSPVDEMILAIRKVMEGKRYLCSEVANNLAFQGL--------PGSNESPFALLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +T I +GKT  E++ +L +S  TVN Y   +  K   K     I  A++   +
Sbjct: 151 QREAEVVTLILQGKTIKEMSEMLVLSDKTVNTYRYRLYSKLHVKNDVELIRLAIKFGYI 209


>gi|238749708|ref|ZP_04611213.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
 gi|238712363|gb|EEQ04576.1| Transcriptional activator protein echR [Yersinia rohdei ATCC 43380]
          Length = 244

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D VR    +       V
Sbjct: 12  NEDINNYIQRRIKAYGDLRYSYLVMNK--KIPLHPAIISNYPLDWVREYQKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +    +   P                    +     + N Y  +  D +     L +   
Sbjct: 70  ILTARDKISPFSWDDNSVINKKSTESAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNG 129

Query: 150 KGRIILRDRLWE-----IGLLAAYQANMFKSYDVHWGKDFEL----------TGREVECL 194
               I  D   E     I +L             +   + EL          + RE E L
Sbjct: 130 NDDSIFFDENIEKYKEKIQMLLILTHEKMLGLYHNNSINNELHGSNIKKDIFSPRENEIL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W S GKT  EI++IL I R+TV  +I +++RK        AI   +   ++
Sbjct: 190 YWASVGKTYSEISIILEIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 28/248 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA------------S 59
           +  +   R   V  L     L A ++ ++       R+  L + +G              
Sbjct: 1   MLSKGSVRPMEVHALSAELVLPAPVLLVEDDPLIRRRLVGLLQQLGYLEDALVLTGSLAE 60

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
              LV         +D  +      DL+      E       L            +  + 
Sbjct: 61  ARALVDNQPVALALVDLGLPDGSGIDLIG-----ELHVANPGLPILVVSA----WSSQDA 111

Query: 120 I-TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           I          Y     D   + + L  +   G  I       I         +      
Sbjct: 112 ILASLRAGATGYVLKERDDLEVMLALRSVLRGGAPIDPFVARRI------IEELPLQSAK 165

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +  L+ RE E L  +SEG  + +IA  L +SR+T+  +I +I RK A  +R+ A  
Sbjct: 166 EKADNAGLSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQAAQ 225

Query: 239 YAVRNNIV 246
            A +  ++
Sbjct: 226 AARQRGLL 233


>gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 220

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 12/185 (6%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L      +   LD  +        ++ +  +              +   VF        
Sbjct: 48  ALEVQSAPELILLDIGLPGMNGISAMKPLRAAS--------PALKIIILTVFDDHNRIFG 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y   T     I   +  +   G  +      ++  L     +          
Sbjct: 100 AICAGADGYLLKTSSAEEIARAIEEVLSGGASMTPQIARKVLEL----MSNTPPKATVPK 155

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE + L  +  G T DEIA  L +S +T++ ++ +I +K     R+GA+A A+
Sbjct: 156 SPSDLSLREQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAI 215

Query: 242 RNNIV 246
           R+ +V
Sbjct: 216 RDGLV 220


>gi|308172085|ref|YP_003918790.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307604949|emb|CBI41320.1| two-component response regulator RBAM_002490 [Bacillus
           amyloliquefaciens DSM 7]
 gi|328910154|gb|AEB61750.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens
           LL3]
          Length = 214

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 9/215 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S    +    E   G     L+         +D  +      
Sbjct: 3   VMIADDQSIVREGLKMILSLHEGIEVSGEASCGEEVLNLLPQTETDVILMDIRMPGMDGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  +          Y  ++    +    F              + Y     D   I   L
Sbjct: 63  EATKA-----VKDRYPSVK---VIILTTFEDGHYIFAGLKSGADGYILKDADSDEIVASL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++      ++     +        +        LT RE++    I EGK++ 
Sbjct: 115 KAVCEGNMMLNPKVTVQVVKALNHMDIPAVQEEPKSNLTEILTPRELDVAKHIMEGKSNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 175 RIAADLFLTEGTVKNYVSRILDKLEVTNRTELTLY 209


>gi|239939692|ref|ZP_04691629.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239986176|ref|ZP_04706840.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291443118|ref|ZP_06582508.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346065|gb|EFE72969.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 216

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA+   LV         +D  +      
Sbjct: 5   VLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVNRLRPDVVAMDVRMPLMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +       V   P  L    F              + +       + I   +
Sbjct: 65  EATRLVLRT-------VPDPPKILVVTTFENDEYVYEALRAGADGFLLKRAKPSEIVHAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L+     ++    + ++   + Y     +           LT RE   L  ++ G ++ 
Sbjct: 118 RLVAEGESLLFPVAVRQLA--SEYGTGRAREALDRAA----LTDREAAVLRLMARGMSNA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +   TV ++++S++ K   + R+ A+  A  +  V
Sbjct: 172 EIAADLVVGIQTVKSHVSSVLAKLGARDRTQAVIAAYESGFV 213


>gi|11344597|gb|AAG34369.1|AF197465_1 nitrate/nitrite response regulator [Pseudomonas fluorescens]
          Length = 215

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 64/235 (27%), Gaps = 32/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  +    D L  +            +  L                
Sbjct: 8   TLLLVDDHPMMRRGIRQMLELEDDLHIVGEASHGEEALSLIEPL---------------Q 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD+ +      + +R +                 L   V     +         N
Sbjct: 53  PDLVLLDNNMPQMNGIETLRRLRAMHYT--------GKVLLFTVSDAEDDIRDALRLDAN 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +I       +                    D ELT 
Sbjct: 105 GYLLKDMEPELLIQYIRDALNGALVISPGLTRVMAQ---------ALRSPPRQADVELTE 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  I+ G ++  I   LGI+  TV  ++ +++ K   ++R  A  +A+ +
Sbjct: 156 RERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210


>gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus]
          Length = 200

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            +  L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIATL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDISIMDIEMPIQSGLDVAETLKKEKSS--------CKVIILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAASIRNVMRGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 215

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 26/229 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   D L  ++ L+             E V       +         +D  + 
Sbjct: 6   VLIVDDNPAVLDGLKIILELEN-FEVVGLFTNAKEAVEF-----LEKGNADVVLMDIRMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +    +                 +    F          +   + Y   + D   
Sbjct: 60  VMDGIEGTFNIKTK--------FPNVKVIILTTFCEEDYIKKSLSFGADGYILKSSDAQH 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECL 194
           I   +  +     +  R+       +A + +N  K     +  +      ELT RE++ +
Sbjct: 112 IIDTIYAVLDGKVVFDRE-------IALFISNTLKKEASSFSGNVNVLKNELTERELDIV 164

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             I++G ++ EIA +L IS  TV NYI+SI++K   + R+    Y  +N
Sbjct: 165 KLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQIAIYYYKN 213


>gi|242278505|ref|YP_002990634.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242121399|gb|ACS79095.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           salexigens DSM 2638]
          Length = 218

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +       +  +      ++ +   +           L               
Sbjct: 5   VTVVIADDHALVREGLKTILKSQSGISVLGMAENGEEAVRLCRRL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        ++ ++            +   L            +      
Sbjct: 50  NPDVALMDLSMPIKSGVQAIQELSGEG---------KTKFLALTAHVEPDHIYSALDAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     + + +  +      +  D   E+           +           LT
Sbjct: 101 SGYVLKTSSSKELVMAIETVMQGKVYLAPDISAEVAKGFLQ-----RDRSNSCDSLESLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E L  +  G  + EIA +L IS  TV  + ++ M+K   ++++   AY
Sbjct: 156 EREREVLKQVLAGYKNREIADLLVISVKTVEKHRSNFMKKLGLRSKAELKAY 207


>gi|163754001|ref|ZP_02161124.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
 gi|161326215|gb|EDP97541.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
          Length = 216

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D I+      ++    A     + Y  ++    +   VF              + Y 
Sbjct: 48  HNIDVILMDIQMPEMDGIKATEIIKEKYPQIKI---IMLTVFDDEENIFRAIQAGADGYL 104

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
               +   I   ++ +   G  +     L  + LL     N     +    +  +LT RE
Sbjct: 105 LKEINAENIHKSILEVINDGAPMSPSIALKTLKLL----RNPLTITEDEAIEKVKLTKRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  +S+G   +EIA  L IS  T+  ++ +I RK     +  A+  A    ++
Sbjct: 161 TDVLLQLSKGLNYNEIAENLFISSGTIRKHVENIYRKLQVHNKMEAVQKAKSQKLI 216


>gi|325277292|ref|ZP_08142919.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324097558|gb|EGB95777.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 219

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L       + +   D       ++ AL                
Sbjct: 4   RLLLVDDHSLIRAGVRALVCDIPGYSVVGEADDGSQLLEQVRALA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +     +           L   +       +       +
Sbjct: 49  PDIVLLDISMRSTSGLDALTQLRACGSN--------CKVLILSMHTDPDLIMRALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +    R +          +        +           LT 
Sbjct: 101 GYLLKDTSATELEQALEAVRHGERYLSPAIA---HTVINQALQRNRPGAQGGSDRHNLTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIATGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 200

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKSS--------CKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R + +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAAAIRNVMKGKREVSQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 200


>gi|300788042|ref|YP_003768333.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797556|gb|ADJ47931.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 63/235 (26%), Gaps = 26/235 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + ++ L      +  +       +       L               
Sbjct: 3   IRVIVADDQEIVRTGLTMLLGSQPGIEVVGEAADGEAAVELARRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +  R +A    +    V+          F              
Sbjct: 48  RPDVCLFDIRMPGMDGIEATRRLAGPGVENPLAVV------VITTFDLDEYVYAALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +        +I       +    A   +              LT
Sbjct: 102 RGFLLKNAGTQLLAQAVHAAATGDALIAPSVTARLLDAFAGTGS-----GAPSQPIEPLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE + L  ++ G+T+ EI   L I+ +TV  +IAS+M K   + R     +A  
Sbjct: 157 DREEQVLLSVARGRTNREITEELYITLSTVKTHIASLMAKLGARNRVEIAIWAHE 211


>gi|271961858|ref|YP_003336054.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505033|gb|ACZ83311.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 27/234 (11%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQK 73
              R   V   P   D +AR             MY +   VG       +          
Sbjct: 3   SALRVMVVDDHPMWRDAVAR--------DLENAMYEVVAAVGEGRQALRVAAAVRPDVVI 54

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      ++ R +A S              L         + +       + Y   
Sbjct: 55  LDLRLPDLPGVEVARGLAASSHPP--------RVLVLSASGEHEDVLEAVKAGASGYLVK 106

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREV 191
           +         +        +           LA      ++        D    LT RE 
Sbjct: 107 SASREEFLDAVRRTAEGEPVFTPG-------LAGLVLGEYRRLATQRPADDGPRLTDRET 159

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L  +++G +  ++A  L +S  TV N++ + + K     R+  + YA+   +
Sbjct: 160 EVLRLVAKGLSYRQVAERLVLSHRTVQNHVQNTLNKLQLHNRAELVRYAIERGL 213


>gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 189

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVVGQAENGEEALKLIEKLQPDISIMDIEMPIQSGLDVAEELQKKKL 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------LCKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMQGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            + ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 PELMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AIA A     +
Sbjct: 159 TVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189


>gi|227832318|ref|YP_002834025.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
 gi|262183824|ref|ZP_06043245.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453334|gb|ACP32087.1| putative transcription regulator [Corynebacterium aurimucosum ATCC
           700975]
          Length = 219

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 64/241 (26%), Gaps = 23/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V + L  +     + V      +  +  +            +   +           
Sbjct: 1   MSMVKVFLVDDHSVFRAGVRAELAAAPEIEIVGDAGTVAEALEGIARTS----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +  +  +       V    +           + I    
Sbjct: 50  ----PDVVLLDVHMPDGGG---LAVINATANQPARPVFLALSVS-----DAAEDVIALIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   ++ +              +    A  +   +  +       
Sbjct: 98  AGARGYVTKNISGPDLAEAVVQVHSGDAYFSPRLAGFVLDAFASGSPAPEPEEGQDPAVD 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT    R     +A   +
Sbjct: 158 ALTRRELEVLRLLARGYTYREIGKQLFISVKTVETHASNILRKTQQSNRHQLTRWATSRD 217

Query: 245 I 245
           +
Sbjct: 218 L 218


>gi|194434215|ref|ZP_03066482.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|194417544|gb|EDX33646.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012]
 gi|320178834|gb|EFW53797.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC
           9905]
 gi|332093180|gb|EGI98240.1| response regulator [Shigella boydii 5216-82]
 gi|332096195|gb|EGJ01198.1| response regulator [Shigella dysenteriae 155-74]
          Length = 215

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       +         +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKAFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|94968001|ref|YP_590049.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550051|gb|ABF39975.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 227

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  +       +  L         +           +   L               
Sbjct: 10  VRILIADDHTIFRDGLRRLLESEPEFDVIGEAADGGEAVQQARRLG-------------- 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +R +   +             +         + +       
Sbjct: 56  -PDVLLLDLAMPRVPGLDALRELTTDDSS--------TKIIILTAAIEKAQIVQALQAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFEL 186
                       +  G+  +      + R+ + +   +  Y  +           K+F L
Sbjct: 107 KGIILKESATQLLLKGIRSVMAGQYWVGRESVND---IVEYLKSTAAGAQADSQAKNFGL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E L  I  G T+ EIA    +S +TV +++ +I  K    +R     +A+   +
Sbjct: 164 TKREMEILGTIVAGFTNKEIAKKFNLSEDTVKHHLTNIFDKVGVSSRLELALFAINQRL 222


>gi|19553213|ref|NP_601215.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390849|ref|YP_226251.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21324779|dbj|BAB99402.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326187|emb|CAF20350.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium glutamicum ATCC
           13032]
          Length = 210

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 77/239 (32%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + ++ L    D    +  +        R        G    +L+   
Sbjct: 2   IRILLADDHPVVRAGLASLLVSEDDFEIVDMVGTPDDAVARAAE-----GGVDVVLMDLR 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              +  ++         +  R +   +      V+          + T  + +   +   
Sbjct: 57  FGDQPGIEVA----GGVEATRRIRALDNPPQVLVV--------TNYSTDGDVVGAVSAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  G+        ++ +    +I                       L+
Sbjct: 105 VGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKI-------------MGRMNNPMTALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ +++G+++ EI   L ++  TV +++  +  K    +R+ A+A A +  I+
Sbjct: 152 AREIEVLSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210


>gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 218

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 65/225 (28%), Gaps = 22/225 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGAS----------HFLLVRWDLFQEQKLDSIVSS 80
           +    ++ +D    W   +       G               + R        +D  +  
Sbjct: 3   ERTISVMVVDDHPMWRDGVARDLSENGFEVAATAPDAPAAVRIARAVRPDVVLMDLNLGG 62

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +  +  D           L         + +       + Y   +   A +
Sbjct: 63  TSGVEATREITTAAPD--------TRVLVLSASGEHSDVLEAVKAGASGYLVKSASAAEL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +        +  L   +            +   LT RE + L  +++G
Sbjct: 115 VDAVRRTADGDPVF----TAGLAGLVLGEYRRMADAPDGAPEPPRLTDRETDVLRLVAKG 170

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T+ +IA  L +S  TV N++ S +RK     R     YA+ + +
Sbjct: 171 LTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 215


>gi|291614188|ref|YP_003524345.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584300|gb|ADE11958.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 235

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ IVL  +       +S L +R      +  +         +                
Sbjct: 3   DELKIVLVDDQSLCRRGLSELLSRCYGFNVLGAVGTIEDLRSLIKE-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +       ++  +          VL         +  +  +       
Sbjct: 49  --QPDLLVVDLRMKPMDGLAMIEQLRKEG-CDIPAVL-------LTMSDSEVDLGNAIRA 98

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +     ++       + ++   + +   S          
Sbjct: 99  GVRGYLLKDMAPEEVVDAIRRVAAGELVVAPTMT--VKMIDMLRGDQ--SGQEPKNSLKL 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS-GAIAYAVRNN 244
           LT RE E L  +S G+++  IA+ L IS +TV  ++  I+ K    +R   A+ +A    
Sbjct: 155 LTEREREILQLLSRGESNKAIALTLSISYDTVKQHVRHILNKLNLSSRVKAAVLFAKEQG 214


>gi|149374952|ref|ZP_01892725.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149360841|gb|EDM49292.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 220

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   S ++ +   +  +  +            +                 D
Sbjct: 2   IRVLVVDDHELVRSGITRMLADNPDIDVIGEASSGEDAIDSVRK---------------D 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V      +        P          
Sbjct: 47  SPDIVLMDIRMPGIGGLEATRRI----LRIDDAV----RVIVVTACADDPYPTRVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D+  +   + +     R I  +   ++ L         +  D        L+
Sbjct: 99  SAYITKGADIREMVRAIRMAHSGQRYISPEIAQKMAL--KQLGGDARDEDGELSLFDRLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    + + +   +I+  L +S  TVN+Y   I  K    +       AVR  ++
Sbjct: 157 EREMQIAMMVVDCQKVQDISDKLCLSPKTVNSYRYRIFEKLEISSDVELALMAVRLGLL 215


>gi|330809071|ref|YP_004353533.1| two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377179|gb|AEA68529.1| putative two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 209

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L    +       + E   G     L+R        LD  +     
Sbjct: 3   RLMVADDHTIMREGLKQLFALVKDFSVVAEAENGVQVLELLRHTDVDVLLLDMTMPGSSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL+  +             +   L   + +             + Y +   D   +   
Sbjct: 63  EDLIGRIHAH--------YPKLPMLILSMHNEAHIAQRALRAGASGYMTKDRDPEALLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +      +I L ++                  LT RE + L  +++G + 
Sbjct: 115 IRKVSTGARYLDPQLAEQIALQSSGV--------TPENAAQSLTSREFQILRMLAQGLSV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA  L IS  TV+ +   +M K    T +  + YA+   +V
Sbjct: 167 NQIAEQLVISNKTVSTHKTRLMEKMCFATSTDLVRYALNEGLV 209


>gi|227115411|ref|ZP_03829067.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 245

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +   +     ++ S++P + V     +       V+  
Sbjct: 15  IKSYLGRKLKQYGDLKYAYMIMNK--KNPSQVVIISNYPQEWVNTYKENNYQHIDPVILT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P                   N++    + N Y  +  D       L ++F +  
Sbjct: 73  AINKVSPFSWEDNIVINSKLKFSKIFNLSKEYDIVNGYTFVLHDNNNHLAALSIMFEEHA 132

Query: 153 IILRDRLWE-----IGLLAAYQANMFKSYDVHWGKDFE---------LTGREVECLTWIS 198
               + + E     + +L         +      +  +          + RE E L W S
Sbjct: 133 PTDMENIVEENKDKLQMLLIAVHEKITTLYKEMTQSTQSKKQGEKEIFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+IL I  +TV  +I ++++K        AI   V   ++
Sbjct: 193 MGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 240


>gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
 gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019]
          Length = 215

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVHQLLELDPGFEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|312884591|ref|ZP_07744295.1| transcriptional regulator, LuxR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367903|gb|EFP95451.1| transcriptional regulator, LuxR family protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 215

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 52/189 (27%), Gaps = 17/189 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +            +D  +      + +R +     +           +        
Sbjct: 43  GLEAYEQCLKLNPDLTFMDLSLPGMSGVEAIRQLRKRWPEM--------MIIVLTASEEE 94

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         N Y       + +   +  +    + +               A      
Sbjct: 95  HKAREALDAGANGYVLKNGSKSTLLAAIKSVTRGKQFLDPSLDASHIEALGQVAE----- 149

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    LT RE + L  I EGK + +IA  L I   TV  +  +IMRK      +  
Sbjct: 150 ----GDIPVLTPREKQVLKLIFEGKRNRDIAEALLIGLKTVETHRMNIMRKLDAHNVADL 205

Query: 237 IAYAVRNNI 245
           + +A R  I
Sbjct: 206 MKWAHRMGI 214


>gi|227543314|ref|ZP_03973363.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227180927|gb|EEI61899.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 212

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 38/244 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +             D             E VG          
Sbjct: 2   IRVLLADDHEIVRMGLKAVL------------DSASDI--------EVVGEVATAEDAIA 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITP 122
             Q+  +D I+             +         ++R        L    + T  + ++ 
Sbjct: 42  AAQQGNVDVILMDMRFGAGAEGSKMRTGADATAEIKRTMKNPPAVLVVTNYDTDADILSA 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +  G+         +       +                  G 
Sbjct: 102 IEAGALGYLLKDAPPQELISGVRSAAEGDTTLSPVVANRL-------------MTRVRGP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  ++ G ++ EI  +L +S  TV +++  I  K   ++R+ A+A A  
Sbjct: 149 KTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSRTAAVAAARE 208

Query: 243 NNIV 246
             ++
Sbjct: 209 QGVL 212


>gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 223

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 5/172 (2%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++      +L    A  +             +    F          A   + +    
Sbjct: 46  DIVLMDIQMPELNGIEATKQLIAANP---DTKVIMLTTFDDEEFVAGAIAAGASGFLLKD 102

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   +   + L++    ++       +  L  +                ELT RE   L
Sbjct: 103 VEPEELFDAIRLVYDGQAVLAPTATAHVLELLKHPNQPAAPTPSPA--VAELTPRETVIL 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+ G T+ EIA    +S  TV  ++  I+ KT ++ R  A+ +A R  +V
Sbjct: 161 RLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRVHAVLFAYRTGVV 212


>gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 58/229 (25%), Gaps = 20/229 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +   V       D L  ++     +             G                +D  
Sbjct: 3   IQVLLVDDHKIMRDGLVSLLGCAGDIDVVAEASG-----GREAVEKALVHSPHVVVMDLT 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +           ++                +         Y +     
Sbjct: 58  LPDMGGIEATRRIMAKN-----PRIRVLVLSML---LDRNCVLESLEAGARGYLAKDCAA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +F               ++  +                 LT RE E L   
Sbjct: 110 EELVAAIRTVFAGKPYFCAGATE--IMIKGFAPGSASQQIAPV-----LTKREREVLKLT 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG  + EIA  LG+S   +  +  +I +K   K+ +    YAVR  ++
Sbjct: 163 AEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQLATYAVRIGLI 211


>gi|320537182|ref|ZP_08037151.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320145970|gb|EFW37617.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 217

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 20/223 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +  +D        +  +               G   F + +        LD  + +    
Sbjct: 3   IAIIDDERLIREGLKIIFSAYPDIEVVGIGSDGNEAFDICKTHAPDLIFLDIRMPNYNGV 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  + +        Y  ++         F  +           + Y         I  G+
Sbjct: 63  DATKKIKEQ-----YPNIKILM---LTTFTDIDYIQQALKNGASGYLLKDSAPDVIYDGI 114

Query: 145 MLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                   +I  +    I L  A  +    +        ++ELT +E+E +  ++EG ++
Sbjct: 115 KAALSGNVVINPEIAQNILLGKAEKREPKTEEEITTLANEYELTQKEIEIIKLVAEGFSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S  T+ N I+ I  KT    R+    +A +N IV
Sbjct: 175 KEIAHKQQLSEGTIKNNISVIFSKTFVADRTQLALFAFKNGIV 217


>gi|258620786|ref|ZP_05715821.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM573]
 gi|258586984|gb|EEW11698.1| Transcriptional regulatory protein uhpA [Vibrio mimicus VM573]
          Length = 208

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+  ++         E   A     +         +D  +  
Sbjct: 5   ALIDDHTIVRSGFAQLLNLEQDMAVQGEYENAKEAFHA-----LTHSPVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +     +           +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHNPNF--------KAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLVDLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   +IA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 QDVKDIAQALFLSHKTVHVHRANILSKLNLTNNVDLIRFALQHHLL 205


>gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR
 gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR
 gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis
           RP62A]
 gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144]
 gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045]
 gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028]
          Length = 209

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +  + +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKDAITKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L +   +    F    E         
Sbjct: 48  KPDLILMDLLMDDMDGVEATTEIKKD--------LPQIKVVMLTSFIEDKEVYRALDSGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIADAVRKTYEGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|319644893|ref|ZP_07999126.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
 gi|317392702|gb|EFV73496.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 75/223 (33%), Gaps = 22/223 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVR--------WDLFQEQKLDSIVSSDWPF 84
           + R++ +D  +     +  L E  G S   + R             + K D ++      
Sbjct: 1   MIRVLLVDDHMMIRKGIRVLLE--GFSGIEIARESNNGNEAVLSAGQLKPDVVLMDLSMP 58

Query: 85  DLVRCM-ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + +    A SE  K    ++        +               + Y         +   
Sbjct: 59  NGLDGFTASSEIRKLNPSVKIV---ILTMHDEEIFVQKAIEAGAHGYVLKNSHYRLLYQA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ ++            +I  +  +  +  K           LT RE E L +I  G  +
Sbjct: 116 IVEVYRGNLFYKTSVSQDI--IDQWLNSEPKKPTSV------LTVREKEILRFIVLGYAN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV N+  ++M+K    ++   I YA++N  +
Sbjct: 168 KEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKNKYL 210


>gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
 gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii
           SH046]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 24/230 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLV------------RWDLFQEQKLDSIVS 79
           L A ++ ++       R+  +   +G S  +L+                     +D  + 
Sbjct: 8   LPAPVLIVEDEAMIRSRLDLILSELGYSQDMLIFAKNLAEAMQIIASQPISLALVDLGLP 67

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVA 138
                 L+  +           +     +      +  +++        N Y     D A
Sbjct: 68  DGNGITLIEKLRE---------IDESALILVISAWSTQQSLFASIKAGANGYVLKERDDA 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTW 196
            + + +  +   G  I      E +  ++       +  +   G+D+ +LT RE E L  
Sbjct: 119 EVLMSIRSILRGGAPIDPFIAREILNQISTSNTPQTERVEQLDGQDYDQLTNRETEILNL 178

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G ++ EIA  L +SR TV ++I  I RK +   R+ A++ A    I+
Sbjct: 179 VAQGLSNREIAEQLFVSRYTVESHIKHIYRKLSVSKRTKAVSTARSLGIL 228


>gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 61/224 (27%), Gaps = 16/224 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L          +D  
Sbjct: 3   IRVVVADDQDLVRTGLVMILGAQPDLEVVGEA-----ADGPGALDLATRLRPDVLLVDIQ 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++ R +A  +      V+          F      +         +       
Sbjct: 58  MPGLDGVEVTRRLAGPDVADPMAVV------VITTFDLDEYVLGALRAGARGFLLKDAGP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +I  +    +  LA +                 LT RE E L  +
Sbjct: 112 ELLVQAIHAAANGDALIAPNVTRRL--LATFADQAPVVPVQPIDP---LTKREEEVLALV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + G+T+ EIA  L +  +TV  ++AS+M K   + R     +A 
Sbjct: 167 ARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVEIAIWAY 210


>gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola
           sp. JR]
 gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola
           potens JR]
          Length = 226

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 80/244 (32%), Gaps = 32/244 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  I +    E     +S +   S     +           +   L            
Sbjct: 1   MAKPKIFIADSHEVVRLGISFIIQCSHEFEVVGQTGSCHEVLRKAEEL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +++ ++     +  R +  S        + +   +     +      +  +
Sbjct: 49  ---QPDVIIMEARMTDGNSIECCRKIKES--------VPKIKVIMLVTGNDDEAIFSCIS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              +      F+   +   + ++     ++          +     +  K+         
Sbjct: 98  AGVDGLLLKQFNSEELIRSIHMVLEGKALLDPS-------ITNKVLDRVKNGQPKPQPKD 150

Query: 185 E--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L  +E   L  I+EGKT+ EIA IL +S NT+ NY++ I+ K     R+ A AYAVR
Sbjct: 151 VALLNPQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVR 210

Query: 243 NNIV 246
           NN++
Sbjct: 211 NNLM 214


>gi|295135650|ref|YP_003586326.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294983665|gb|ADF54130.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 213

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 30/229 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       + ++   +D +  +  +         +                   
Sbjct: 3   TVLIADQHPVIAESIKYILETNDFINVIGQVLTGKELFKYLE------------------ 44

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
              +  D ++       L    AL +  + Y  ++       P        ++       
Sbjct: 45  --NRAPDVLMIEIDLPQLNGIHALRQIKQQYPHIKILVFSCHP---EEMYALSAIKAGAA 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y S T     +   +  +   G  +  +   ++        +   +      +  +L+ 
Sbjct: 100 GYISKTNPADIVYKAIKQVTRGGIYLNEEITQKL-------NSGISNGQNQISRFKKLSS 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           RE E L  +S GK + +IA  L I+  TV+ Y A +++K    + +  I
Sbjct: 153 RETEVLNLLSSGKRNKDIAEALSINEKTVSTYKARLLKKLDADSVAELI 201


>gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 211

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L         +  +     G      V         +D  +     
Sbjct: 2   EVIIVDDQTIVRDGLVTICERLPDVEVVAAVGDGRQALAAVAEHSPDVVLMDLRMPHMDG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R + +     +         +    F                Y +       +   
Sbjct: 62  IEATRHITMDHPGTH--------VVVLTTFIDDESINAALTAGALGYLTKEAGREDVDRA 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L        ++       +  LA       +           LT RE E L  +++G ++
Sbjct: 114 LRAAARGQALLDPAVHARLVALA-----RQQPAAGSGELPAGLTAREAEVLICMAKGLSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV  ++  +  KT ++ R  AIAYA R  +
Sbjct: 169 REIARSLFVSEATVKTHVNRVFAKTGSRDRGQAIAYAHRYGL 210


>gi|16130130|ref|NP_416697.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109009|ref|AP_002789.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           W3110]
 gi|170081813|ref|YP_001731133.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901367|ref|YP_002927163.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|400374|sp|P31802|NARP_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narP
 gi|304917|gb|AAA24200.1| nitrate/nitrite response regulator [Escherichia coli]
 gi|1788521|gb|AAC75253.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675300|dbj|BAE76656.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K12 substr.
           W3110]
 gi|169889648|gb|ACB03355.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860866|gb|ACR62864.1| DNA-binding response regulator in two-component regulatory system
           with NarQ or NarX [Escherichia coli BW2952]
 gi|260448714|gb|ACX39136.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|315136825|dbj|BAJ43984.1| transcriptional regulator NarP [Escherichia coli DH1]
          Length = 215

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       V  L         +                    GAS   L
Sbjct: 3   EATPFQVMIVDDHPLMRRGVRQLLELDPGSEVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 48  ANRLDIDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +       ++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|227489040|ref|ZP_03919356.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227090985|gb|EEI26297.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 212

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 38/244 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +             D             E VG          
Sbjct: 2   IRVLLADDHEIVRMGLKAVL------------DSASDI--------EVVGEVATAEDAIA 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITP 122
             Q+  +D I+             +         ++R        L    + T  + ++ 
Sbjct: 42  AAQQGNVDVILMDMRFGAGAEGSKMRTGADATAEIKRTMKNPPAVLVVTNYDTDADILSA 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +  G+         +       +                  G 
Sbjct: 102 IEAGALGYLLKDAPPQELIAGVRSAAEGDTTLSPVVANRL-------------MTRVRGP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  ++ G ++ EI  +L +S  TV +++  I  K   ++R+ A+A A  
Sbjct: 149 KTTLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSRTAAVAAARE 208

Query: 243 NNIV 246
             ++
Sbjct: 209 QGVL 212


>gi|317124112|ref|YP_004098224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588200|gb|ADU47497.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 244

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 74/242 (30%), Gaps = 7/242 (2%)

Query: 8   VNIVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA--SHFLLV 64
           + +VL  +    RT   + L + +       P     +       +    GA  S   ++
Sbjct: 7   IRVVLVDDHHMFRTGVRAELMSAATPDGGSGPAGARPAAPTYAPQIVGEAGAVESATSVI 66

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +           +      +     Q    L   V     + I    
Sbjct: 67  KETRPDVVLLDVHIPGGDGHGGADVIRACAGVQTEAG-QPVRFLALSVSDAAEDVIAVIR 125

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + T     +   +  +     +        +       A      D    +  
Sbjct: 126 AGARGYVTKTISAGDLLTAIGRVADGDAVFSPRLAGFVLDAFGAAAGEVAEIDEELDR-- 183

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E +  I+ G    E+A  L IS  TV  +++S++RK    +R    A+A+   
Sbjct: 184 -LSAREREVMRLIARGYQYKEVAKELFISIKTVETHVSSVLRKLQLSSRHELTAWAMGRR 242

Query: 245 IV 246
           ++
Sbjct: 243 LL 244


>gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 67/243 (27%), Gaps = 36/243 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V +VL  +     + +  L      +A +   D                GA    L 
Sbjct: 20  APPVRVVLCDDHAVVRAGLRALLGSDPGVAVVGEADS---------------GAEAVALA 64

Query: 65  RWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    +D  +       +  R +  +              L    + T  +     
Sbjct: 65  AKLAPDVVLMDLQLGPGMDGVEATRRITAASGGS-------VHVLVLTTYDTDADITRAI 117

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   +         +          +A       +S        
Sbjct: 118 EAGATGYLLKAERPDELFTAIHSAAAGRTALS-------APVAHRVMARMRSPRP----- 165

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  +S G T+ +IA  L +S  TV  ++  I  K    TR+GA+A A   
Sbjct: 166 -TLTDRERDILGQLSRGLTNRDIAKALFLSEATVKTHLGRIYDKLGVDTRAGAVAVAKEQ 224

Query: 244 NIV 246
            ++
Sbjct: 225 RLL 227


>gi|327459203|gb|EGF05551.1| two component system response regulator [Streptococcus sanguinis
           SK1057]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 76/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +    +  +  +        +++ +               
Sbjct: 2   IKVLIADDQALIRESLQIILSAHADIEVVGTVGDGKEVLEKLHRV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +   +      + Y  ++    +    F       +      
Sbjct: 47  -----HPDVILMDIRMPVMDGVLCTKAVKEQYPDVKI---IILTTFDDDEFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  ++  G +I  +   ++  + +  A    +  V      +++
Sbjct: 99  SGYILKGVSTEELHEAIQTVYRGGAMINPNIATKVFKIFSQMAQSNFAITVTEENIEDMS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ E+A  L +S  TV NY++ I+ K   + R+    +AV+  
Sbjct: 159 RTEWKIIQQIGFGISNKEVAAKLFLSEGTVRNYLSGILAKLNLRDRTQLAIWAVQTG 215


>gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 208

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 69/243 (28%), Gaps = 37/243 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +     + +  L    D +  +                    G     L 
Sbjct: 1   MSGVRVLLVDDHPVVRAGLRALLASHDGVDVVAEASS---------------GEEAVALA 45

Query: 65  RWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    +D  + +          +  +E             +    + T  + +   
Sbjct: 46  GSTEPDVVLMDLRLGAGLDGAGATARITAAENPP--------RVVVLTTYDTDADILRAV 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y         +   +        ++  D    +                     
Sbjct: 98  EAGASGYLLKDTAPEVLIESVFAAARGDTVLDPDVAQRLY-------------RRMQQPR 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EL+GREVE L  +++G ++  IA  L +S  TV +++     K    +R+ A+A A   
Sbjct: 145 VELSGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARER 204

Query: 244 NIV 246
            ++
Sbjct: 205 GLI 207


>gi|302546395|ref|ZP_07298737.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464013|gb|EFL27106.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 223

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 73/241 (30%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + IVL  ++    + +  + +    L  +                    GA    LVR
Sbjct: 5   PPLRIVLADDERMVRTALRAILSCEPDLEVVGEAGS---------------GAEAVPLVR 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +           +  +       V + P  +    F            
Sbjct: 50  ELRPDIVLMDVRMPDIDGIRATEQILRT-------VPEPPRIIVVTTFENDAYVYDALRA 102

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   + L+     ++    +  +    A  A    +      +   
Sbjct: 103 GASGFLLKRARADDLVQAVRLVARSDSLLFPAAVRALAAEHAAAAGGRDAARALRDR--- 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G ++ EIA  L +   TV  ++A+++ K   + R+ A+  A     
Sbjct: 160 LSEREADVLRLMAAGLSNAEIAARLTVGPATVKTHVAAVLGKLGVRDRTQAVIAAYECGF 219

Query: 246 V 246
           V
Sbjct: 220 V 220


>gi|317491608|ref|ZP_07950044.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921155|gb|EFV42478.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 218

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C         +               +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  SADIVLMDMNMPGIGGLEATRKILRYNPD--------VKVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L         +           L+
Sbjct: 99  FGYLSKGAAPQEVVNAIRAVHSGQRYIASDIAQQMAL--------SQLTPQTDSPFASLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  +++G    EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 151 ERELQIMLMLTKGSKVVEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|239906056|ref|YP_002952795.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795920|dbj|BAH74909.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 218

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 15/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   + L  ++  D + +      +  E +        +        LD  +
Sbjct: 5   RLLIVDDHPLFREGLKAILRRDPSYAVAGEAGSYAEAL-----RTAKDCRPDLAVLDISL 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L R +          +L     L   +   +             Y +      
Sbjct: 60  PDRSGIQLARELRQ--------MLPSLGILMVSMHAKVDYVAEALKVGALGYLTKDAATD 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  GL  +      +      EI    +  A   ++ +        LT RE E +  + 
Sbjct: 112 NLLSGLRAVAAGQPWLDPTLSVEIS--RSLLAKTPRAEEESHSAYDSLTPREREVMRLVV 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG ++ E+A  L IS  T  ++  S+MRK   +     + YA +  ++
Sbjct: 170 EGLSNKEVAAALEISVKTAEHHRGSLMRKLGMQNSVELVRYATKLGLI 217


>gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 218

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 67/210 (31%), Gaps = 9/210 (4%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKD 96
           ++        +  L E  G          L   Q +++        DL       L    
Sbjct: 11  VEDHPIVRQGLRTLLERQGCQVVAETGDGLEALQLIETHQPRLLLLDLSLKGLNGLEVLR 70

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           +     +    L   ++      +    G    Y      V  +   L  L+   R +  
Sbjct: 71  QARRRARSMRVLVLSMYDDDAYVVEALRGGAMAYVLKGSPVEELVQALEALYQGRRYLS- 129

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                   L+       ++          LT RE + L   +EG TS EIA  L IS  T
Sbjct: 130 ------APLSERLLAQAEAPQDLRDPYETLTDRERQILHLTAEGYTSREIAERLFISPRT 183

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +  ++M K    +++  I YAV+  +V
Sbjct: 184 VEKHRENLMAKLDIHSQAELIHYAVQRGLV 213


>gi|159897633|ref|YP_001543880.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890672|gb|ABX03752.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 218

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 62/210 (29%), Gaps = 18/210 (8%)

Query: 38  PLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            L   +     +  + E   G     +V   L     +D ++      +  R +  +   
Sbjct: 19  GLRAFLDTQPDIEIVGEAASGEEGVQVVSQVLPDVVLMDLLMPGIDGVEATRQVRGAS-- 76

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +    +                Y         +   +         +  
Sbjct: 77  ------PHTQVIVLTSYSEDERIFPAIKAGALSYLLKDVGPDALVAAIRAARRGEATLHP 130

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                  ++A+                  LT RE E LT I+ G ++ EIA  L I   T
Sbjct: 131 -------MVASRLMTEL--TSSRRSPLDTLTEREREVLTCIARGMSNAEIAEHLVIGERT 181

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  ++++I+ K   + R+ A   A+R  +V
Sbjct: 182 VKTHVSNILSKLHLQDRTQAAIMALRERLV 211


>gi|161830943|ref|YP_001596915.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|161762810|gb|ABX78452.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
          Length = 216

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHVLIRRGMRLMLEQVKGIRIVGEASTGEEGLALRREKEPDVVMLDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R     +  +    ++                +         + + + D   +   +
Sbjct: 64  ELAR-----KLLRRDPEIKILVVTAM---EGELLPMRLLDVGVRGFITKSSDSGELERAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I       + L                    +L+ R++E L  +++G  ++
Sbjct: 116 RAVHSGQRYISSAIASRLAL---------SKTTPTKSPFDQLSHRQMEVLLLLAKGMKAE 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 167 EIAKQLHITTKTVNSHRYRMFDKLGVKNDVELIKLAVQYGVI 208


>gi|291614056|ref|YP_003524213.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584168|gb|ADE11826.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 208

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +       +  L T S  ++              +  +               
Sbjct: 2   IRVFIADDHAIVREGLKQLFTLS-GISMAGEATNGAQLLESLRKV--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+  +           L           +             
Sbjct: 46  QVDLLLLDMTMPGISGVELIERIRAQ-----DPQLPILVLSM---HNEPQIARRALIAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             YC+   D   +   +  +   GR I      ++       A               L+
Sbjct: 98  AGYCTKDSDPEVLIEAIRKVASGGRFIAPSLAEKMAFDTGQHAQYLPRE--------VLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  + +GK+ +E+A  L IS  TV+ + A +M+K   +  +  I Y V + +V
Sbjct: 150 EREYTILHLLVQGKSVNEVAAELVISNKTVSTHKARLMQKLNLQNNAELIRYGVEHGLV 208


>gi|194446212|ref|YP_002041213.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404875|gb|ACF65097.1| response regulator UvrY [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 218

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  + E   + +  +      +  +                    G       R +
Sbjct: 2   INVLLVDDHELVRAGIRRILEDIKGIKVVGEA---------------CCGEDAVKWCRTN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A S  D           +   V    P          
Sbjct: 47  AVDVVLMDMNMPGIGGLEATRKIARSTADI--------KVIMLTVHTENPLPAKVMLAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPAKTETPFASLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 209


>gi|145225590|ref|YP_001136268.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315445943|ref|YP_004078822.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145218076|gb|ABP47480.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315264246|gb|ADU00988.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. Spyr1]
          Length = 209

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 72/244 (29%), Gaps = 38/244 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              + V IVL  + E     +  +                 ++  R+  + + VGA   +
Sbjct: 1   MSSEPVRIVLVDDHEMVIEGLKAML---------------AAFADRVCVVGQSVGADQVM 45

Query: 63  LVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            V  DL       D  +      D+ +     +  +     +        V+        
Sbjct: 46  GVVTDLDPDIVLCDVRMQGSSGLDVCQ-----QLRRRDPDRKIVM---LSVYDDEQYLFQ 97

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y   +     +   L  +      I                          G
Sbjct: 98  AMRVGASGYLLKSISSEDLVEQLESVHSGKTAIDPTMAARAV--------------EWPG 143

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L  +  G ++  IA  L I   TV  +++SI RK     R+ A+A A+
Sbjct: 144 ARQGLTQRESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAVATAL 203

Query: 242 RNNI 245
           R  I
Sbjct: 204 REGI 207


>gi|312961526|ref|ZP_07776027.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284205|gb|EFQ62785.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 215

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 32/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +       +  +    D L  +           ++ A+                
Sbjct: 8   RILLVDDHPMMRRGMRQILELEDDLQVVGEAGNGQEALDQIDAV---------------Q 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD+ +      + +R +                 L   V     +         N
Sbjct: 53  PDLILLDNNMPHMNGLETLRRLRAMHY--------GGKVLLFTVSDAEDDIRDALRLDAN 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +        +I       +                      ELT 
Sbjct: 105 GYLLKDMEPELVVEFIRDALRGALVISPGLTRVLAQ---------ALRSPQPHAAVELTE 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  I+ G ++  I   LGI+  TV  ++ +++ K   ++R  A  +A+ +
Sbjct: 156 RERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210


>gi|226951745|ref|ZP_03822209.1| response regulator [Acinetobacter sp. ATCC 27244]
 gi|294648987|ref|ZP_06726435.1| response regulator [Acinetobacter haemolyticus ATCC 19194]
 gi|226837535|gb|EEH69918.1| response regulator [Acinetobacter sp. ATCC 27244]
 gi|292825122|gb|EFF83877.1| response regulator [Acinetobacter haemolyticus ATCC 19194]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     LVR  
Sbjct: 18  ITVLVVDDHELVRTGICRMLEDHPDVEVVGQAES---------------GEEAIALVRQK 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  +  D           +        P          
Sbjct: 63  HPQVVLLDVNMPGIGGVETTRRLLQTAPD--------TKVIAVSGLAEEPYPSLLLKAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 115 KGYITKGAPIAEMVRAINKVMLGGKYFSAD-------IAEQLASSYL-SDTQQSPFDALS 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K A  +       A+R  ++
Sbjct: 167 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDVKLTHLAIRYGLI 225


>gi|307154251|ref|YP_003889635.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984479|gb|ADN16360.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 12/185 (6%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A    LV         LD  +  +   D+++ +                 L         
Sbjct: 47  AKAINLVNRYHPHLMLLDLELEQESGLDILKYLQTLHSSII--------TLVLSAHQEDN 98

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                       Y      V ++   +  +         +   +      +  N      
Sbjct: 99  LIFEAMQSGAKGYIFKMNIVQQLGEAINTVMNDKVYFPPEVATQF----FHYFNTCSEPL 154

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V+  K  +LT RE E L ++ +G ++++IA  L I+  TV  ++ +I  K   K R+ AI
Sbjct: 155 VNAEKKIDLTRREKEVLQYLIKGLSNEQIAQQLYITVATVKAHLTAIFNKLGVKNRTQAI 214

Query: 238 AYAVR 242
             A++
Sbjct: 215 VAAMK 219


>gi|163739745|ref|ZP_02147153.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
 gi|163743097|ref|ZP_02150479.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383514|gb|EDQ07901.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386975|gb|EDQ11336.1| arginyl-tRNA-protein transferase [Phaeobacter gallaeciensis BS107]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 68/240 (28%), Gaps = 38/240 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +    D +  +              AL               
Sbjct: 5   IRVLIVDDHPMVAEGIQSILESYDDIEVVGIPSNGEEAVTEARAL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D I+       L    A     +     +           +     +  A   
Sbjct: 50  -----KPDVILMDLNMPKLGGLSATEIILEQSPATRILILSM---HDSPEYISSALAHGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y         IR  +  +      +       +                    D E L
Sbjct: 102 MGYVLKDVPTEEIRQAIDTVMRGETYLCTGAEGSL--------------KPKDDPDREAL 147

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE   L  +++GK++ ++A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 148 TGREQTILLELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|298505405|gb|ADI84128.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 216

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +     +  L +    +  +   D                G      V+  
Sbjct: 3   IRVVIVDDHKIMREGLKSLLSMEKDILVVGEADN---------------GRVATQCVKDL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +A       Y  ++                    +   
Sbjct: 48  DPDIVLMDLTMPEMNGIDATRRIAAD-----YPSVRVLALSM---HSDRRFIEEALSAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +      +       +  +  Y     +           LT
Sbjct: 100 QGFLLKDCAFDELVNAIHEVVADRFYLSPRITGVV--IKDYLGRRGRPESA---SSIRLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I+EGK + E+A  L +S  TV +    IMRK  T + +    +A+R  +
Sbjct: 155 PREREVLQLIAEGKNTKEVAFALDVSVKTVESQRMQIMRKLKTNSIADMTKFAIREGL 212


>gi|229818835|ref|YP_002880361.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564748|gb|ACQ78599.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 220

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 60/224 (26%), Gaps = 11/224 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +     +  + E   GA+    VR        +D  +     
Sbjct: 6   RVLLADDHAAIRAGLRLMLEQAGDVEVVGEAADGAAAVTNVRALRPDVVLMDVRMPGTDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +                 +    F                +   T D   +   
Sbjct: 66  IAATETIVGEGLAD---------VVVLTTFDLDEYVFAALRAGAAGFLLKTTDAPALLDA 116

Query: 144 LMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +      +  +     +  +A   A              ELT RE + L  +  G +
Sbjct: 117 VRRVAAGEGALAPEVTRRVLDAVARGPAPGGSDDPAVPHGLAELTDRERDVLACLGRGLS 176

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IA  L I+  T   +++ ++ K    +R  A   A    +V
Sbjct: 177 NAGIARELVITEATAKTHVSRVLAKLGCSSRVQAALLAREAGVV 220


>gi|163847172|ref|YP_001635216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525011|ref|YP_002569482.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668461|gb|ABY34827.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448890|gb|ACM53156.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 219

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 73/240 (30%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +       +  +  R      +  +                 GA+       
Sbjct: 4   PITILIADDHTMFRQGLREILERKGGFQVVAEVRD---------------GAAAVEAAST 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +  R +A         VL         +       +      
Sbjct: 49  TKPDIALLDVSMPVMTGIEAARQIAQVSPQTRCVVL--------TMHRDEQTVLEALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N Y     D   +   + +++              G  AA   ++ +  D     +  L
Sbjct: 101 ANAYLLKDADATELIEAIHVVYRGEAA-------LAGSAAARVLDLLRRNDTSPALNEVL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +++G  +  IA+ L ++  TV N ++ I +K     R+ A   AV+  +V
Sbjct: 154 TPRERDILALLAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213


>gi|311894159|dbj|BAJ26567.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 233

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 21/221 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTE-----------YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R++  D           + +             G       R         D  +     
Sbjct: 17  RILLADDQDDIRSGFRLILDSQPDMTVVGEAADGLRAIEQARLLRPDVLLADVRMPGADG 76

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R +A                +    F                +         +   
Sbjct: 77  LEVTRVLAGG----------PTRVIVVTTFDDDAYVRAALGSGACGFLLKRSGPNLLIEA 126

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +     +     +           LT RE E +  +++G+T+
Sbjct: 127 VRAAMAGDTLISPQITVRLLRDLGHGPAAPRPPQPAESAVEPLTEREWEIVELVAQGRTN 186

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EI   L IS  TV  ++A++  K  T+ R    A+A R  
Sbjct: 187 AEIGAGLFISAGTVKTHLANVQGKLGTRNRVAIAAWAWRTG 227


>gi|42780178|ref|NP_977425.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42736096|gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 19/227 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + L  +I    +              G      +         +D  + 
Sbjct: 5   VLIVDDHFVVREGLKLIIETSDSFQIIGEATN-----GEEALSFIEKKKPDVILMDLNMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + +  +   +             +    ++     +         Y     D   
Sbjct: 60  KMSGLETIEVLNKKQN--------HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDREN 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L        ++  + + +I           K    +  ++  LT +E+  L  I+ 
Sbjct: 112 LFRTLEAAIRGEILLQPNIMEKI------VNYKRKEIHANVVEENNLTEKELFVLKAIAR 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + +IA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 166 GNKNKDIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIEKKLI 212


>gi|294499414|ref|YP_003563114.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349351|gb|ADE69680.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 212

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +I  D        M  +               G       +        LD  +      
Sbjct: 5   IIIADDNSFIREGMKIILNTYEEFDVVATLKDGQEAVQYCKNHSVDIALLDVRMPVMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + ++            +   L    F      I         Y     +  RIR  +
Sbjct: 65  EATKLISELT---------KAKPLILTTFDDDEYIIDAVKNGAKGYLLKNTEPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F    ++    L +I              D+      + T RE   +T I++G ++ 
Sbjct: 116 KSVFNGHTVLQDVVLDKIKSSLNAATERESKADM-----TQFTERETSIMTLIAKGLSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  TV NYI+SI+ KT  + R+    Y
Sbjct: 171 EISKTLFISEGTVANYISSILSKTGLEHRTQIAIY 205


>gi|238789482|ref|ZP_04633267.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
 gi|238722432|gb|EEQ14087.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S   + +            +                 + 
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSSEFSTIYESVDGSEALETLK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 171

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 15/183 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      D+ R +  +       +L          +       
Sbjct: 1   AAYSGVASGSVAVLDGRLPDGSGIDVCREIRSALPGVACLIL--------TSYDDDEALF 52

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +        Y         +   +  +     ++                   +      
Sbjct: 53  SAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRR-------VLERLRDGPHED 105

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K    +R+ A  Y 
Sbjct: 106 PAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVYL 165

Query: 241 VRN 243
           ++ 
Sbjct: 166 MKQ 168


>gi|239927189|ref|ZP_04684142.1| LuxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291435532|ref|ZP_06574922.1| luxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291338427|gb|EFE65383.1| luxR family two-component response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 67/238 (28%), Gaps = 27/238 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + + L  + E     V  L      ++ +           R+ AL             
Sbjct: 11  DPIRVFLLDDHEVVRRGVHDLLNDEPDISVVGEAATVEQALARVPAL------------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   LD  +       + R +     +           L    F      +     
Sbjct: 58  --RPQVAVLDVRLPDGDGVSVCRELRSGMPELAC--------LMLTSFDDEEALLDSIMA 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y       + +   +  +     ++      ++           +  D   G    
Sbjct: 108 GASGYVLKQIRGSDLVAAVRTVARGQSLLDPSATTKLMARLRGGQQKEEEPDALPG---- 163

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A   
Sbjct: 164 LTDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATEA 221


>gi|238795676|ref|ZP_04639190.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
 gi|238720402|gb|EEQ12204.1| Two component transcriptional regulator, LuxR family [Yersinia
           mollaretii ATCC 43969]
          Length = 209

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 72/229 (31%), Gaps = 28/229 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--LDSI 77
            + +          A+++ L+  +       +  E                     +D  
Sbjct: 4   VALIDDHIVVRSGFAQLLSLEKDIRIIGEYGSAAEAW-------ANLPSIDVHVAVMDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +           +     +   ++ T     +      + Y +     
Sbjct: 57  MPDESGLSLLKRLRQK--------MPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +   G  +  D L  +           +   +   +   LT RE E    +
Sbjct: 109 DELVQALRTVSGGGLYLCSDALRAL-----------RHMPLQPPQLAVLTPREKEIFQLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +   IA  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 158 IKGISVKSIAEQLLLSHKTVHVHRANILGKLQCETTVELVHFALQHQLL 206


>gi|27366323|ref|NP_761851.1| response regulator [Vibrio vulnificus CMCP6]
 gi|37679417|ref|NP_934026.1| response regulator [Vibrio vulnificus YJ016]
 gi|320156831|ref|YP_004189210.1| barA-associated response regulator UvrY (GacA SirA) [Vibrio
           vulnificus MO6-24/O]
 gi|27362524|gb|AAO11378.1| BarA-associated response regulator UvrY (= GacA = SirA) [Vibrio
           vulnificus CMCP6]
 gi|37198160|dbj|BAC93997.1| response regulator [Vibrio vulnificus YJ016]
 gi|319932143|gb|ADV87007.1| barA-associated response regulator UvrY (GacA SirA) [Vibrio
           vulnificus MO6-24/O]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      D   +      +               +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGENAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVVLMDMNMPGIGGLEATKKILRVNPD--------VKIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  SGYLTKGAGPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K +          A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLSINGDVELTHLAIRHGML 209


>gi|322614808|gb|EFY11737.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618915|gb|EFY15803.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623622|gb|EFY20461.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629079|gb|EFY25858.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631800|gb|EFY28554.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637463|gb|EFY34165.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642147|gb|EFY38757.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645829|gb|EFY42350.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649793|gb|EFY46218.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653193|gb|EFY49526.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660658|gb|EFY56894.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664810|gb|EFY61003.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668811|gb|EFY64963.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670683|gb|EFY66816.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679079|gb|EFY75134.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682106|gb|EFY78131.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685064|gb|EFY81061.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323193043|gb|EFZ78266.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196875|gb|EFZ82017.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203860|gb|EFZ88877.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207054|gb|EFZ92007.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209899|gb|EFZ94813.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214419|gb|EFZ99170.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220141|gb|EGA04605.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226305|gb|EGA10517.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230258|gb|EGA14378.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233996|gb|EGA18085.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238310|gb|EGA22368.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243997|gb|EGA28006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246585|gb|EGA30559.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252172|gb|EGA36029.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257780|gb|EGA41459.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261204|gb|EGA44796.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264864|gb|EGA48363.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272428|gb|EGA55835.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 49  ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L        + +N       H   D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLN-------FISNARPPKGGHH--DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L+  +S    +  + E       L    +   +Q  +  +       
Sbjct: 4   ILLVEDQKLIREGLNALLSLESDLAIIAEAANGKIALDWLANAKPDQLPELALIDMRMPV 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +      +   K+Y  ++         F          A     Y         +   + 
Sbjct: 64  MDGVATTAMISKHYPAIKVL---VLTTFDDDQLIAQSMAVGAQGYLLKDTPSEELAAAIR 120

Query: 146 LLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDFE------------LTGR 189
            +               +  +  +AA   +             E            LT R
Sbjct: 121 SVAKGYSQFGPGIVQKMIGALPNIAAPPVSRSTRASSALDTSLEANKVDLPPEVAALTPR 180

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           E E L  I  G ++ EIA  L +S  TV N++ S++ +   + R+ A   A
Sbjct: 181 ETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVTSVLSRLGLRDRTQAALLA 231


>gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 211

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 28/237 (11%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +      R   V   P   + L  +I     +    +        G+      R    
Sbjct: 1   MAVAASKSIRILSVEDHPVVREGLVSIIGSQPDMVLVAQATN-----GSDAIAQFRTHHP 55

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      D +  +             R   +      +  E           
Sbjct: 56  DITLMDLRLPGISGTDALISIRGE--------FPRARVIILTTSDSHTEIDRALRAGAAA 107

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +  +  +   +  +    R I ++    +                    +  LT R
Sbjct: 108 YILKSMPMNEMLAVIRSVHAGARHIPQEVASRLAENIG---------------EESLTSR 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I +G  + +IA  L IS  TVN +I +I+ K     R+ A+  AVR  ++
Sbjct: 153 ELEVLHLIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLL 209


>gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30]
 gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR
 gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus
           A5948]
 gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3]
 gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30]
 gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20]
 gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9765]
 gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR
           [Staphylococcus aureus A9754]
 gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus]
 gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus]
 gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus]
 gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 209

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   +    +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L +   L    F    E         
Sbjct: 48  KPDLILMDLLMDDMDGVEATTQIKKD--------LPQIKVLMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     I   +        +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 209

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 77/239 (32%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   + E     +S   ++   +  +           + + L               
Sbjct: 3   IKVLFVDDHEMVRIGISSYLSKQSDIEVVGEGASGKEAIAKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L +   L    F    E         
Sbjct: 48  KPDLILMDLLMDDMDGVEATTQIKKD--------LPQIKVLMLTSFIEDKEVYRALDAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T     I   +        +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|262370175|ref|ZP_06063502.1| response regulator [Acinetobacter johnsonii SH046]
 gi|262315214|gb|EEY96254.1| response regulator [Acinetobacter johnsonii SH046]
          Length = 211

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     LVR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDHADVQVIGQAES---------------GEEAINLVRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +  +         +             P          
Sbjct: 47  HPNVVLLDVNMPGIGGVETTRRLLQT-----APETKVLAVSGL---AEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    V  +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPVTEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQTSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EI+  L +S  TVN Y   I  K    +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEISDKLFVSVKTVNTYRYRIFEKLNIDSDVKLTHLAIRYGLI 209


>gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 222

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 10/221 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPF 84
            +    ++ +D    W   +    E  G +                  +   ++      
Sbjct: 6   GENPVTVMVVDDHPMWRDGVSRDLEAAGFTVSATAEGVESARRRAAAVQPAVVLMDMNLP 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D     A +   +      +   L         + +       + Y   +  VA +   +
Sbjct: 66  DGNGADATTAVLEVSP---KSKVLVLSASAERDDVLDAVKAGASGYLVKSASVAELLEAV 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              F    +        +  L  Y+       D    +   LT RE E L  +++G ++ 
Sbjct: 123 RATFDGQAVFTPGLAGLV--LGEYRRMSTAPADDRAPELPRLTDRETEVLRLVAKGLSAK 180

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L +S  TV N++ + +RK     R     YA+   +
Sbjct: 181 QIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM
           4136]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 74/246 (30%), Gaps = 38/246 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+     V I+L  +     S ++      + L  +                        
Sbjct: 1   MSTAPPPVRILLVDDHFVVRSGLAASLGLEEDLLVVAEAGSAA----------------- 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D ++      ++       +  + +  ++         F    +  
Sbjct: 44  ---EALTACAAHTPDVVIMDLQLGEVNGITCTEQLGQAHPGIRILVFSS---FARDEDVY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   +     +   +  +    R +  D    +                  
Sbjct: 98  RAIRAGALGYLQKSAPREDLLKAIRTVGLGKRYLPGDIAQRLAERLGRP----------- 146

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               E + RE E L  +++G+++ EIA +LG+S  TV  ++++++ K   + R+ A+  A
Sbjct: 147 ----EPSPREREVLAQMAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEA 202

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 203 IRRGLL 208


>gi|168231547|ref|ZP_02656605.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168240384|ref|ZP_02665316.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261008|ref|ZP_02682981.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168465653|ref|ZP_02699535.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194445419|ref|YP_002039793.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448069|ref|YP_002044584.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471844|ref|ZP_03077828.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734277|ref|YP_002113562.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204930612|ref|ZP_03221542.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|238911321|ref|ZP_04655158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194404082|gb|ACF64304.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406373|gb|ACF66592.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458208|gb|EDX47047.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194709779|gb|ACF89000.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631799|gb|EDX50319.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|204320546|gb|EDZ05749.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205334067|gb|EDZ20831.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205340203|gb|EDZ26967.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205350008|gb|EDZ36639.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 49  ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L        + +N       H   D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLN-------FISNTRPPKGGHH--DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|238760517|ref|ZP_04621652.1| Two-component response regulator [Yersinia aldovae ATCC 35236]
 gi|238701269|gb|EEP93851.1| Two-component response regulator [Yersinia aldovae ATCC 35236]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S+  + +            +                 + 
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSNEFSTIYESVDGSEALEILK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|297580055|ref|ZP_06941982.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535701|gb|EFH74535.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 253

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 72/225 (32%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90
           L++++            +     + G    +        +  ++ I       FD    +
Sbjct: 23  LISQLEESHSFSKVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDWFDDGENI 82

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIR 141
             +   KY  + +   E   P F              +  P G   +      F    + 
Sbjct: 83  DAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGLE 142

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISE 199
             + L   K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 143 GAVSL-GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 201

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 202 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246


>gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 245

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 74/238 (31%), Gaps = 23/238 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            ++                 L    G  +FL+ R    +      I++   P   +    
Sbjct: 7   FISACSQAGSADRVRSEFAKLIREYGFEYFLVSRRMTGELASAGQILAEHLPDGWLEVYR 66

Query: 92  LSEKDKYYNVLQRPTELFCPVFH-----TLPENI-----------TPPAGMDNRYCSLTF 135
             + +    V +    +  P         LP  +               G+   Y     
Sbjct: 67  AKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGYAFPVH 126

Query: 136 DVARIRIGLMLLFPKGRIIL------RDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTG 188
             A     + +  P  ++              +       +     +         ELT 
Sbjct: 127 GRAGFIGAVFIGGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVSALELTR 186

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  +++G TS EI   L IS +TV+ YI  I R+ + K R   +A A R+ ++
Sbjct: 187 REMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRHGLL 244


>gi|71281032|ref|YP_269953.1| response regulator [Colwellia psychrerythraea 34H]
 gi|71146772|gb|AAZ27245.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  +       ++ + T    L  +   +                G       R  
Sbjct: 2   INVLLVDDHHLVRVGINKILTSVKGLKVVGECET---------------GEEAIKFCRNS 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +       +   ++    +        P          
Sbjct: 47  EPDVLLMDMDMPGMGGLEATKKILR-----FAPDVKI---IVLTAHTEDPFPSKVMQMGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    R +  D   ++ L      N FKS +        L+
Sbjct: 99  AGYLTKDAGPDEMVNAIRAVHSGQRYLPSDIAQKMAL------NQFKSVED--NPFNTLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G     I+  L +S  T+N+Y   +  K            A+R  ++
Sbjct: 151 DRELQIMIMITRGDKVPAISEHLNLSTKTINSYRYRMFEKLDVSNDVELTHLAIRYGML 209


>gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 211

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 71/224 (31%), Gaps = 18/224 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D L     +   V          E   G      ++        LD  +    
Sbjct: 4   TRIILADDQLLIRAGIRAIVETLPGFQIEAECTDGYEAISAIQRLQPDVVLLDIAMPGPS 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             ++ R +       +    +                    A   N Y    F +A +  
Sbjct: 64  GIEVARTIRQ-----FDPNTKILVLSS---VDRPEIIEQALAAGVNGYLLKDFVLAELLQ 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L ++    R +              + + F   +   G   +LT R+ E L  ++ G+T
Sbjct: 116 ALEMVLHGERFLSP---------KIREMSRFSDAEGTSGSGTQLTARQTEILRLVASGRT 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  LGIS  TV  + + +M +      +G   +A++  +V
Sbjct: 167 TKEIARDLGISPKTVEFHRSRLMERIGVHDVTGLTRFALQTGVV 210


>gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            + +  +        +          +G   F          +     + S +P      
Sbjct: 9   DEFVDCLHSAHTEEDFRRVAERTAHALGFRWFAYFGHRANGPK-----LISSYPKSWTSH 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFD 136
                 D    VLQ P                          +      +          
Sbjct: 64  YFREGYDNIDPVLQEPRNTSRMFLWDGREARSAKSPKERRLFDDALSFKIRTGLTVRIPS 123

Query: 137 VARIRIGLMLLFPKGRI-------ILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELT 187
                    L      +         +D L  +GL      +  +         +   LT
Sbjct: 124 SQNQFAAFTLAADDRSLGLDRFIETSQDMLEMVGLTYHAHVSAARIGRTPPDGQQGSPLT 183

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +CL WIS+GKT  +IA +LG+S   V  ++ +  R  A  T   A+A A R  ++
Sbjct: 184 QRERQCLAWISDGKTMQDIAELLGVSPRGVKFHLDNARRNLAALTLPHAVALAFRQGLL 242


>gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0101]
          Length = 248

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           R++ +D        + A  E  G    +           ++ L  +V SD     +    
Sbjct: 23  RLLLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEDGWAKAQELLPDLVISDVMMPRLDGYG 82

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L  K +    L     +F        + I       + Y    FD   +   +  +  + 
Sbjct: 83  LLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDELVARVRNVVRRQ 142

Query: 152 RIILRDRLW----EIGLLAAYQ---ANMFKSYDVHWGKDF---ELTGREVECLTWISEGK 201
             +L++       +IG +A       ++  +            E T RE   L  ++EG 
Sbjct: 143 ERLLQEAARFADADIGQMAKQITEIRSLLATGGSKKQSAAVKHEFTPREASVLQLVAEGM 202

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 203 MNKEIARRLETSIRNVEKYVSRLFTKTGTASRTELVRYALEHGLV 247


>gi|257454885|ref|ZP_05620136.1| response regulator UvrY [Enhydrobacter aerosaccus SK60]
 gi|257447818|gb|EEV22810.1| response regulator UvrY [Enhydrobacter aerosaccus SK60]
          Length = 212

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +  + + S  +  +                    G +  +  +  
Sbjct: 3   IRVLVVDDHDLVRMGIVRMLSDSPDIDVIGEAAD---------------GETAIIKTKQL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    ++ + +  ++K+     +    +         P          
Sbjct: 48  KPDVVLLDVNMPTIGGLEVTKRLLQTDKNTKILAVSSLVQQ--------PYPSMLIKAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +    +  +  G+  +   GR    D   ++  +           D        L+
Sbjct: 100 SGYITKGTPLDEMIKGIKKVHQGGRYFSADVAEQLADILF--------TDNSESPFDALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +   K+  +IA  L +S  TVN Y   I  K    +       A+R+ +V
Sbjct: 152 EREMQVAMMVVNCKSPQQIADQLFVSVKTVNTYRYRIFEKLNIDSDVKLTHLAMRHGLV 210


>gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 231

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 70/249 (28%), Gaps = 28/249 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + +  + E   + V            +  L  +     +   +          +
Sbjct: 5   ETAKIRVAMVDDHEMFRAGV------------IATLRDSFDIVGQAADV-----PGSVAM 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  V           +A S       V    +    P      +     
Sbjct: 48  IAQTKPQVVLLDVHVPGGEGGGGAEILAKSRSYSPTTVFLALSVSDAP-----QDVGAVI 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV----- 178
                 Y + T   A +   +  +     +        +                     
Sbjct: 103 RAGAQGYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSAFQGVPAAGSDGGADGAAR 162

Query: 179 -HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 76/227 (33%), Gaps = 18/227 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + LA +  ++  +S   +  ++ E                   LD  
Sbjct: 2   IRLLLVDDHTAFREALALICSIEEDISVISQAGSIEEARKY-------IQSVNFVLLDLG 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D VR +  S    +  VL               +         +        V
Sbjct: 55  LPDGNGVDFVREIKSSNPACHVLVLTGSM--------NKLDLARAIDAGADGVMLKLSRV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +   G I     + E+ LLA               K  +LT RE E L  I
Sbjct: 107 QDIIQAIRCISAGGSIHSPQEIAELLLLAGRAR---IEDANARDKIGQLTDREREILQAI 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +EG +  EIA    I+ +T + +  +I+RK  T +R  A+ +A+R+ 
Sbjct: 164 AEGLSDKEIAARFNITVDTAHKHANNILRKLDTNSRLQAVLFALRHG 210


>gi|213965869|ref|ZP_03394060.1| two-component system response regulator [Corynebacterium amycolatum
           SK46]
 gi|213951447|gb|EEB62838.1| two-component system response regulator [Corynebacterium amycolatum
           SK46]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 75/240 (31%), Gaps = 18/240 (7%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +     + +  +   +  +  +           ++ AL +        LV  
Sbjct: 4   PIGVLIADDHPIVRAGLRAVVESAPDIVVVGEAASGDEAVEKVRALLDDDSCDRIDLVLM 63

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           DL   +   +   +          AL+ +      +     L    + +  + +      
Sbjct: 64  DLRFGEAPGAATRAGGVDATAAIRALAGRGVKAPEV-----LVVTNYSSDSDVLGAVTAG 118

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +  G+        ++       +                    +  L
Sbjct: 119 AVGYLLKDAAPEELIDGIRRAVRGETVLNTQVAGRL-------------MGRMRNPNTAL 165

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  ++ G ++ +IA  L ++  TV +++  I  K    +R+ A+A A    ++
Sbjct: 166 TPRELEVLELVARGMSNRKIAEQLVLTEATVKSHLVHIFTKLDVSSRTAAVARAQELGML 225


>gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 200

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|302533753|ref|ZP_07286095.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442648|gb|EFL14464.1| two-component system response regulator [Streptomyces sp. C]
          Length = 221

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 74/244 (30%), Gaps = 27/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + +V+  ++    + +  +      +  +                    GA    
Sbjct: 1   MSRPPLRVVVADDERMVRTALRVILDAEPDMEVVGEAAT---------------GAEAVA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LVR        +D  +           +  S  D    V+          F         
Sbjct: 46  LVRSLTPDVVLMDVRMPQIDGLGATGQILRSMPDPPRIVV-------VTTFENDSYVYDA 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +     D   +   + L+     ++    +  +       A+   +       
Sbjct: 99  LRAGASGFLLKRADPDELIGAVRLVARGDSLLFPAAVRALA-----AAHTAAAEPPAPAW 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  ++ G ++ E++  LG+   TV  ++A+++ KT ++ R+ A+  A  
Sbjct: 154 AARLTDREADVLRLMATGLSNQEMSEHLGVGPQTVKTHVAAVLAKTGSRDRTQAVIAAYE 213

Query: 243 NNIV 246
              +
Sbjct: 214 GGFI 217


>gi|299820669|ref|ZP_07052558.1| LuxR family DNA-binding response regulator [Listeria grayi DSM
           20601]
 gi|299817690|gb|EFI84925.1| LuxR family DNA-binding response regulator [Listeria grayi DSM
           20601]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 65/223 (29%), Gaps = 15/223 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS-SDWP 83
           L    D       L   ++    M  + +   G   FL +  +      +D  +   +  
Sbjct: 3   LLIADDHAVVRSALKFMINAQKDMEVIGDAADGTEAFLFIESNRPDIVLMDLSMPPGENG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +                 +   +                 Y         +   
Sbjct: 63  LLTTKRITE--------AFPETKVILLTMHDEEAYITQALQAGAQGYIMKNSSEELLLDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     II       +   ++ Q    K  D        L+ RE E L  I+ G  +
Sbjct: 115 IRSVMGGQIIIDP-----VFNYSSKQIEQLKRADASENIIERLSKREKEILPLIALGYGN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  + + IM+K   K  S  + + V+  ++
Sbjct: 170 KEIAERLFISAKTVEVHKSHIMKKLEMKKFSDLLRFCVKEQLI 212


>gi|297563772|ref|YP_003682746.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848220|gb|ADH70240.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 234

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 67/248 (27%), Gaps = 28/248 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + V  L  R + +  +                    G    + +   
Sbjct: 2   IRVLLVDDQPLVRTGVRALLERDEGIEVVAESQN---------------GREALVDIDRH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSE---------KDKYYNVLQRPTELFCPVFHTLPE 118
                 LD  +       ++R +                  +       +    F     
Sbjct: 47  RPDVVLLDLQMPVMDGLAVLRELGRRGGPAPGRSTNAHVDTSTDHGVRVVVLTTFGEDDN 106

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             T      + +        ++R  +  +     ++       +      +         
Sbjct: 107 VFTALRLGASGFLLKDAGPRQLRDAVRTVAAGDALLSPGVTRRV----IERLADTAVAPG 162

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LTGRE + L  +  G ++ EI   L +S  T   ++  ++ K   + R G + 
Sbjct: 163 SASRLDVLTGRERDVLALVGRGMSNQEIGAALHLSPATARTHVGRLLAKLGVRDRVGLVV 222

Query: 239 YAVRNNIV 246
            A    +V
Sbjct: 223 VAYETGLV 230


>gi|119485367|ref|ZP_01619695.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119457123|gb|EAW38249.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 250

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 78/268 (29%), Gaps = 45/268 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +VL  +       +     + D +  +   +        +  +            
Sbjct: 1   MSKIRVVLVEDHNLSRVGLVAALKQVDDIEVVGDAENGRKGLEMLRTM------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMA--LSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                    +D  +      +L + +    +  +       R   L   +       +  
Sbjct: 49  ---QPDVGIIDIGLPDIDGIELTQQLRKIQANLEPGD----RSKVLILTMHEEENSVLAA 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A   + Y      +  +   +   +     I  +    +   A    +   +  V    
Sbjct: 102 FAAGADSYSLKDASLDTLVQAIRSTYEGNAWIDPNIARIVLKQARTSESENSATAVDPIT 161

Query: 183 D------------------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                                    + LT RE+E L  I  G ++ EI+  L ++  TV 
Sbjct: 162 SDSEDLKQMVKIDSAQSDVQQLLDTYPLTERELEVLELIVGGCSNAEISEKLYVTVGTVK 221

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ SI+ K   + R+ A   A+R+ +V
Sbjct: 222 THVRSILNKLCVEDRTQAAVRALRSGLV 249


>gi|262204346|ref|YP_003275554.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087693|gb|ACY23661.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 213

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 71/227 (31%), Gaps = 18/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R           + L  M+ L  T+             G     LV          D  +
Sbjct: 4   RVVIADDQTVVREGLRSMLGLLDTLDVVGVA-----ASGEEALELVDETEPDVLLTDLRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + +  +  S              +    +      +   +     + +   D  
Sbjct: 59  PGIGGVEAISRLVASGSS--------TRAVALTTYDDDATILAALSAGALGFLNKDADPE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L+       ++    L  +                       LT REVE +  I+
Sbjct: 111 TIEAALVSAAAGRSLLDEKALRAL-----MSRGRSADDPPRRTPPDGLTEREVEVIALIA 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++ +IA  L +S +TV  +I  I+ KTA + R+  ++YA R+++
Sbjct: 166 EGLSNQQIATRLVVSLSTVKTHINHILAKTACRDRAALVSYAFRHHL 212


>gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
           +R++ +D        +    E  G   F+ V  +      +     ++ SD         
Sbjct: 15  SRILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTVFPDLIISDVMMPRANGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           AL EK +    L     +F        +         + Y S  FD   +   +  +  +
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 151 GRIILRDRLW----EIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISE 199
              +L++       ++  +A     +          + E        T RE   L  ++E
Sbjct: 135 QERLLKEAARFADIDVSKMAKQITEIKSMLTDQNQANPENKINLPSFTPREASVLQLVAE 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++V
Sbjct: 195 GLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 24/236 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-----------YVGASHFLLVRWDL 68
            S  +  P   D   R++  D           + +             G+    L R   
Sbjct: 1   MSDAADTPPPEDAPIRVLIADDQAMVRTGFRLILDSQPGIEVVGEAADGSECVELARRHR 60

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R +A         V      +    F       T       
Sbjct: 61  PDVCLVDIRMPKLDGLEATRLLAGPG------VADPLRVVVVTTFDQDDYVHTAIRNGAC 114

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +         +   +      G ++          +       + S          LTG
Sbjct: 115 GFLLKDAGPELLVEAVRSAARGGALVSPA-------ITVRLLRQWASRPGAATGANPLTG 167

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE++    ++ G+T+ EI   L +S +TV  ++++I  K A + R    A+A    
Sbjct: 168 RELDVARLVAVGRTNQEICAELHLSLSTVKTHLSNIQTKLAVRNRVEIAAWAWDTG 223


>gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 79/224 (35%), Gaps = 24/224 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL------------VRWDLFQEQKLDSIVSSDWP 83
           MI ++       R+ ++   +G +   L            +         +D  +     
Sbjct: 1   MIVVEDEPLIRNRLESILHGLGYADDALIFAATLGQARARLAEHPVAMALVDLGLPDGSG 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRI 142
            +L+  +  +        +            +  + I +      N Y     D   + +
Sbjct: 61  IELISQLRAA-----DPGMGILVISA----WSTEDAILSALRAGANGYVLKERDDLEVTL 111

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +   G  I       I  +A  Q +           +  L+ RE++ L  +++G T
Sbjct: 112 SIRSVLRGGAPIDPFIARRI--IAELQPSQPTEAHKEMPPEAILSAREIQILKLVADGMT 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +SR TV  ++ +I RK A  +R+ A++ A    ++
Sbjct: 170 NREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 213


>gi|117927726|ref|YP_872277.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648189|gb|ABK52291.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 70/243 (28%), Gaps = 27/243 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E   + + L  + E     ++ L      +              R+ A+        
Sbjct: 1   MTEERPPIRVFLVDDHEVVRRGLTQLLEAESDIRVAGEAGTAAEALARVPAV-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      ++ R +  +       +L          F       
Sbjct: 53  -------RPDVAVLDVRLPDGDGVEVCRELRSALPGLACLIL--------TSFADDDALY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y         I   +  +   G ++       +      QA   +      
Sbjct: 98  RAILAGASGYVLKQIRGNEIVSAVRTVAAGGSLLDPVTTTRVLQRLRDQAERPEPG---- 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT +E   L  I EG T+ +I   L ++  TV NY++SI+ K   + R+ A   A
Sbjct: 154 NPYAALTEQERRVLELIGEGLTNRQIGERLFLAEKTVKNYVSSILAKLGLQRRTQAAVLA 213

Query: 241 VRN 243
           V +
Sbjct: 214 VEH 216


>gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 205

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 21/225 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +     +  + E   G    +L           D  + S 
Sbjct: 1   MTTVLLVDDHPVVRSGLRAVIDAGESLRVIGEAATGEEAIVLAGELRPDVVLCDLRLGS- 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +R             +   T      F    E +         Y     D   I 
Sbjct: 60  -GIDGIRTTVALRALDPAPAVLILTT-----FDRDAEVLGAIEAGAAGYLLKDVDPEVIV 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+        ++  D    +                       LT RE+E L  ++ G 
Sbjct: 114 EGIRRAAAGDVVLAPDLAARV-------------LKGMRSPLPRLTDREIEVLRHLARGA 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L ++  TV +++A I  K    +RS AI  A    ++
Sbjct: 161 TNREIARTLFVTEATVKSHLAHIFTKLDVDSRSRAIHVAQETGLI 205


>gi|303246118|ref|ZP_07332399.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492514|gb|EFL52385.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 17/231 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             +   +   P   + L  +I      +         E +      LVR        LD 
Sbjct: 4   PLKVLLIDDHPLFREGLRSLIAGQTAYAVLGEAGTAREALE-----LVRTQSPDIVVLDI 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +++R +    +     V+         +   L             Y      
Sbjct: 59  GLPDADGIEVIRQLRAMSQPPRILVV--------SMHTRLDLVAESLRQGALGYVLKGSA 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            A +   L  +    R +    + ++ L L  Y     +  D  +     LT RE + L 
Sbjct: 111 PASLVHALDAVSRGDRYLDGAIVPQVLLKLDEYAERRSRPVDPAYD---TLTRREQQILR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG+    IA  L ISR TV N+ ++I  K +    +  + YAVR  I+
Sbjct: 168 LLAEGRGVATIAAELFISRKTVENHRSNIFGKLSFSNMAELVHYAVRMGII 218


>gi|126739109|ref|ZP_01754803.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719726|gb|EBA16434.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 26/231 (11%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   P  ++ +  ++     +     +       G+      +        +D
Sbjct: 3   DMIRVLIVDDHPMVAEGIQSILESYDDIEVLASL-----TDGSEAVAQAQTLGPDVILMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +  +              L   +  +     T  +     Y     
Sbjct: 58  LNMPKLGGLSATEMILENH--------PETRILILSMHDSPEYISTALSHGAMGYVLKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I++ +  +    R +       +                       LTGRE   L 
Sbjct: 110 PTEEIKLAIDTVMRGERYLCTGAQGAMAPKEGETREA-------------LTGREQTILL 156

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 157 ELAQGKSNKEVALHLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|189402762|ref|ZP_03006834.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|300938742|ref|ZP_07153464.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|189364696|gb|EDU83115.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|300456315|gb|EFK19808.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|323975265|gb|EGB70369.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 216

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 63/228 (27%), Gaps = 34/228 (14%)

Query: 14  REDEQR--TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           R+D      + +          A+++ L+  +       +     G      +     Q 
Sbjct: 16  RQDPIMITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQV 70

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +      +L+  +            +    +   V  +              + 
Sbjct: 71  CICDISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFL 119

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S       +   +  +   G  +  D   ++                  G+   LT RE 
Sbjct: 120 SKRCSPDELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRER 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +    +++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 164 QVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 211


>gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator
           [Pseudomonas fluorescens]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 64/213 (30%), Gaps = 23/213 (10%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
            +  + +        +E     ++ S++P   ++    +       ++    +   P   
Sbjct: 32  DLQGASYAYFAAPRNREVAP--LIVSNYPARWLKAYKNANYHLIDPIIHHGLKSCAPFSW 89

Query: 115 TLPENITPPAG------------MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE- 161
           +      P               +         D   +   L L     +     R+ + 
Sbjct: 90  SDALQAAPCERSRELFRRSSQYRICTGATFTLHDAGGMFSSLSLCNSGPQAEFERRMADQ 149

Query: 162 ---IGLLAAYQANMFKSYDV-----HWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
              + +          S           +   L+ RE+  L W+  GK   EIAVI  IS
Sbjct: 150 QGHLQMALIRFHGRLLSLRAMDELFPEPQTGPLSARELGVLKWVMMGKAYREIAVICAIS 209

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  ++++I  K        A+  A R  I+
Sbjct: 210 ERTVKFHMSNISGKLQVCNAKQAVYEAQRQGIL 242


>gi|121603701|ref|YP_981030.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592670|gb|ABM36109.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 31/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       +  + T ++ +  +           ++                  
Sbjct: 2   IRIVIADDHAIVREGLKRIVTLAEDMTVVGEAANGTEVMQQVRE---------------S 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      +L++ +   +         R   L   +   L   +       
Sbjct: 47  DFDVLVLDLSMPGRSGMELIKMVRCEK--------PRLRILVLSMHEELQYAVRSIKCGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +      ++   L  +   G  I      ++ L +   ++              LT
Sbjct: 99  SGYLTKESAPMQLMQVLRKIAAGGAFISTGVAEQLALGSMLGSSAAAHEK--------LT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E    I+ G +  +IA  L +S  T++ + A++M+K   + +S  I YA+++ 
Sbjct: 151 DREFEVFRLIAIGMSVTDIAGRLNLSAKTISTHKANLMQKMNLQNQSELIRYAIKHG 207


>gi|333028632|ref|ZP_08456696.1| putative LuxR family DNA-binding response regulator [Streptomyces
           sp. Tu6071]
 gi|332748484|gb|EGJ78925.1| putative LuxR family DNA-binding response regulator [Streptomyces
           sp. Tu6071]
          Length = 212

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 57/221 (25%), Gaps = 13/221 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +     +  + E   GA      R        LD  +       
Sbjct: 2   LLADDHALVRRGLRLILDAEPDLTVVAEAGDGAEAVEQARLHRPDLAVLDIAMPRMTGLQ 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +           L     +   ++                Y   +     +     
Sbjct: 62  AAREL--------SRALPGLRMIVLTMYDNEQFFFEALKAGAGGYVLKSLADRDLIEACR 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   +       +                       LT RE E L  ++EG +S +
Sbjct: 114 AAMRDEPFLYPGATGAL----IRNYLDQARRGEEPAGGSTLTPREEEILKLVAEGHSSKD 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L IS  TV  + A+ + K   K R     YA+R  +V
Sbjct: 170 IAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 210


>gi|238786248|ref|ZP_04630193.1| Two-component response regulator [Yersinia bercovieri ATCC 43970]
 gi|238712839|gb|EEQ04906.1| Two-component response regulator [Yersinia bercovieri ATCC 43970]
          Length = 210

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S+  + +            +                   
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSNEFSTIYESVDGSEALEILK---------------NSP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSEA---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 83/252 (32%), Gaps = 32/252 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I +  +D      ++ L +++D +                ++ +E  G          
Sbjct: 2   ISIGIADDDALVRQTLTDLLSKNDDIVVAWTAKDGQEALDLFHS-SEVDG---------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +       L + +     D           L    F          A   
Sbjct: 51  KVQAVLVDIQMPKMDGLALAKALLEENPD--------TAILILTTFTADSIVDDAMALGV 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             + +     + +   +        ++       I   A   AN          K  +  
Sbjct: 103 RGFVAKEDGASSLAGAIRQAVAGNLVLSPTSSAIISDQARLWANGSAQPSESTSKQTQTQ 162

Query: 186 -----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE E LT + + KT+ +IA  L +S  TV  ++++I+ K   + R 
Sbjct: 163 QSASPLPHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATVKTHVSAIIAKLGVQDRV 222

Query: 235 GAIAYAVRNNIV 246
           GA+ YA+++N+V
Sbjct: 223 GAVVYALQHNLV 234


>gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 10/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D    W   +       G +                  +   ++      D     
Sbjct: 12  VMVVDDHPMWRDGVSRDLGEAGFTVAATADGVGSATRRAAAVRPTVVLMDMQLPDGNGAQ 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A +E  +          L         + +       + Y   +   A +   +      
Sbjct: 72  ATAEVLRVSP---DSRVLVLSASAERDDVLEAIKAGASGYLVKSASAAELIEAVRATAAG 128

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +        +       A+     D        LT RE E L  +++G ++ +IA  L
Sbjct: 129 QPVFTPGLAGLVLGEYRRMASAPARPDEPHRPA--LTERETEVLRMVAKGLSAKQIAARL 186

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+S  TV N++ + +RK     R     YA+   +
Sbjct: 187 GLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|307947515|ref|ZP_07662848.1| two component LuxR family transcriptional regulator [Roseibium sp.
           TrichSKD4]
 gi|307769333|gb|EFO28561.1| two component LuxR family transcriptional regulator [Roseibium sp.
           TrichSKD4]
          Length = 236

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 74/246 (30%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E  +  +++          +      +D    +                    G + 
Sbjct: 1   MIEEQSKTRVLIVDSQPFVRQGIKACLNATDHCEVVGEAAD---------------GYAA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            L  +    Q   L++ ++    ++ V+ +   +++     +        P         
Sbjct: 46  ILAAKTCRPQLVILEATITGMTTYETVKRLRKLDENMR---ILICFNSEDPFEIH----- 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                        + +   +   +  +   G  +  D       L     +         
Sbjct: 98  ELLQAGAGGVLQKSAEPTELINAVRAVAGGGSYLTGD-------LVNRVFSASSQSSTGV 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              + LT RE E L ++++G ++ E A  L +S  TV  +  +I RKT   T S  +  A
Sbjct: 151 N-LYGLTTRETEILRFVADGMSNKETANRLNLSVRTVETHRLNIRRKTKAYTLSDLVRVA 209

Query: 241 VRNNIV 246
            R  +V
Sbjct: 210 RRLRLV 215


>gi|282863211|ref|ZP_06272271.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562193|gb|EFB67735.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 216

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V+++L  ++    + +  +      +  +       +    +  LT              
Sbjct: 3   VSVLLVDDEPLVRAGLRAVLEAQQDIEVVGEAADGAAVIPLVRRLT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V Q P  L    F              
Sbjct: 49  -PDVIAMDVRMPLMDGIEATRAVLR-------AVPQPPKILVVTTFENDEYVYEALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A I   + L+     ++    + ++   A Y  +  ++          LT
Sbjct: 101 DGFLLKRARPAEIVHAVRLVASGESLLFPAAVRQLA--AEYGTSEARAAMDRAA----LT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  ++ G ++ EIA  L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 155 ERESAVLRLMARGLSNAEIAAELVVGVQTVKTHVSAVLAKLGARDRTQAVIAAYESGFV 213


>gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 207

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +       V+ +      +  +           +   L               
Sbjct: 5   MSVLIVDDHPLLREGVAAVLEAEPDIQVVGEAADGQDAIAQFKRL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +     D           +    +      ++      
Sbjct: 50  RPDVVLMDLQMPGVDGVEAIREIRAQAPD--------ARIIVLTTYAGDVRALSALRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   +     +   +  +    R +  +   +I + A                   L+
Sbjct: 102 SGYLLKSSLRRELIDTIRAVLGGQRYLHPEVAHDIAVNAIA---------------EPLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  ++ G  + EIA  L +S +TV  ++ SI  K     R+ A+  A R  I+
Sbjct: 147 EREIDVLKRVANGAANKEIARALSLSEDTVKGHMRSIFSKLDVTDRTQAVTVAHRRGII 205


>gi|73543101|ref|YP_297621.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72120514|gb|AAZ62777.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 231

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 14/223 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
              + +    D       +   ++    +Y + E  G    L         ++ D +++ 
Sbjct: 16  DAPARVLLIDDHALVRDGMRMHLTLQPDLYVVGEADGGEAALAWLERAGARERPDLVITD 75

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                +      +   + Y  +             L             Y         +
Sbjct: 76  IGMRGMGGIALTAALHEQYPEIAVLVVSM---HDNLEYARQAVRAGARGYVLKDAPADEL 132

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +                                 G    LT RE + L  I  G
Sbjct: 133 MAAIEAVLAGRVFYSARIARG-----------MAEQMPATGPLDALTRRERDILGCIGRG 181

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             + EIA  LG+S  TV  +  ++ RK   + R+G + YAV  
Sbjct: 182 MANKEIATQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVEQ 224


>gi|114047794|ref|YP_738344.1| transcriptional regulator NarL [Shewanella sp. MR-7]
 gi|113889236|gb|ABI43287.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 221

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 21/238 (8%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N V+  ED+     +   P   + + ++I +   +             G    +L     
Sbjct: 3   NQVITEEDKATILLIDDHPMLRNGVKQLIGMADNLCIVAEA-----SCGKDGIILATQLD 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + +  +   E             +   V +   + +       +
Sbjct: 58  PDLILLDLNMPEFNGLETLTKLRECELS--------SRIIVFTVSNYEGDIVNAFKYGVD 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LT 187
            Y     +   +   +        ++          +A   A   +       +D E LT
Sbjct: 110 GYLLKDMEPEDLLQSIQQAAAGKIVLSDA-------IAPILATGLRHNPPATKRDIESLT 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  +S+G ++  IA  L I+  TV  ++ ++++K + K+R  A  + ++ NI
Sbjct: 163 AREKDIIRLVSQGLSNKMIARKLIITEGTVKVHVKNLLKKLSFKSRVEATVWILQENI 220


>gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 219

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 14/226 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   + +AR       +         T     +   + R    Q   +D  + 
Sbjct: 5   VMVVDDHPIWREGVAR------DLDERGLDVVATAADADAAVRIARAVRPQVVLMDLNLG 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +R +           L     L         + +         Y   +     
Sbjct: 59  GTSGVDAIRGIVD--------ALPDTRILVLSASGEHTDVLEAVKAGATGYLVKSAGADE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        +        +       A+              LT RE   L  +++
Sbjct: 111 LLDAVRRTADGYPVFTPGLAGLVLGEYRRLADEPARRPAGDPAVPALTERETGVLRLVAK 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+  I   LG+S  TV +++ + +RK     R+  + YA+   +
Sbjct: 171 GLTARAIGERLGLSHRTVESHVQNTLRKLQLHNRAQLVRYAIEQGL 216


>gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 165

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 15/165 (9%)

Query: 96  DKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLTFDVARIRI 142
                V+Q           +                N     G+ + +      +   R 
Sbjct: 1   MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGK 201
           GL    P    I   +   + LLA+Y        D     +   LT RE E L W++EGK
Sbjct: 61  GLTFAGP-QLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGK 119

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 120 TDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164


>gi|229526554|ref|ZP_04415958.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229336712|gb|EEO01730.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 250

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90
           L++++       +    +     + G    +        +  ++ I       FD    +
Sbjct: 20  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDWFDDGENI 79

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIR 141
             +   KY  + +   E   P F              +  P G   +      F    + 
Sbjct: 80  DAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGLE 139

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISE 199
             + L   K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 140 GAVSL-GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|254386960|ref|ZP_05002242.1| two-component regulator [Streptomyces sp. Mg1]
 gi|194345787|gb|EDX26753.1| two-component regulator [Streptomyces sp. Mg1]
          Length = 220

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 71/230 (30%), Gaps = 13/230 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
            R S  + +    D       +   +     +  + E   GA    L R D      LD 
Sbjct: 1   MRPSAPARVLLADDHALVRSGVRLILDAEPDLSVVAEAADGADAVALARRDP----GLDL 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +            A  E  +    L+        ++              + Y   +  
Sbjct: 57  AILDIAMPRQTGLQAARELSRLRPGLRILM---LTMYDNEQYFFEALKAGASGYVPKSVA 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +             I      E  L+  Y  +  ++      +    T RE E L  
Sbjct: 114 DRDLVEACRAALRDEPFIYPGA--ETTLIRTYL-DRARTGGALPARPI--TEREEEILKL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG TS EI   L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 169 VAEGHTSKEIGDFLVISAKTVERHRANLLQKLGLRDRLELTRYAIRVGLI 218


>gi|29899136|gb|AAP03103.1| putative 2-component system response regulator [Streptomyces
           griseochromogenes]
          Length = 222

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +    + +  +                    GA    L R  
Sbjct: 3   IKVMLADDQAMIRGGLKLILEDQENITVIGEAAD---------------GAEAVDLARRL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++ R +A                +    F              
Sbjct: 48  RPDVCLIDIRMPKLDGIEVTRALAGPGVP--DP----LRVVVVTTFDLDEYVYGALHAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +        +I       +                      +L+
Sbjct: 102 VGFVLKDAGPTLLVEAVRAANAGDALISPSITLRLLRNL-----APAWRTTVPKPAQQLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  I+ G+T+ E+A  L IS +TV +++A+I  K   + R    A+A  + ++
Sbjct: 157 ERETQVIRAIARGRTNQEVAAELFISLSTVKSHLATIQNKLQVRNRVEIAAWAWESRLM 215


>gi|238795683|ref|ZP_04639197.1| Two-component response regulator [Yersinia mollaretii ATCC 43969]
 gi|238720409|gb|EEQ12211.1| Two-component response regulator [Yersinia mollaretii ATCC 43969]
          Length = 210

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S+    +            +                 + 
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSNEFTTIYESVDGSEALEILK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSEA---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|307327922|ref|ZP_07607104.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886440|gb|EFN17444.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 226

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 58/229 (25%), Gaps = 14/229 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R             L  ++     V             G     + R        +D
Sbjct: 10  EPIRVLVAEDQSAVRSGLVLILRSAPDVEVVGEA-----VDGLQAVEMARALRPDVVLMD 64

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         R +   +             L    F              + +     
Sbjct: 65  VQMPRLDGVSATRQVVAEQLAD---------VLVLTTFDLDEYVFGALRAGASGFLLKDS 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           + A +   +  +     +I       +    A                  LT RE E L 
Sbjct: 116 EAADLIEAVRTVGRGEGMIATAVTRRLIAEFARPQTAPSLNTPSPAALASLTPREREVLA 175

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            + +G ++ +IA  L ++  TV  +++ ++ K   ++R  A   A    
Sbjct: 176 CLGQGLSNAQIAARLSMAEATVKTHVSRLLSKLELRSRVQAAVLAQELG 224


>gi|227834277|ref|YP_002835984.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183011|ref|ZP_06042432.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455293|gb|ACP34046.1| two-component response regulator ChrA [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 206

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           VN++L  +     + +  +      +  ++           +  L +  G          
Sbjct: 2   VNVMLIDDHPVVRAGLRAILNAFPDIEVVLEGSDG----SAVEKLADADG---------P 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         R +   +             L    + T  + +       
Sbjct: 49  HIDVVVCDIQMPDVDGIAATRRVRELDGPP---------VLILTTYDTQADILAAVEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   ++      R +  +    +              +     +  L+
Sbjct: 100 LGYLLKDAPEDTLHTAVLDTAAGKRTLAPEVTNLLA-------------ERLAQPETALS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +S G ++ +IA  L IS  TV  ++  + +K   +TR+ A++ A    ++
Sbjct: 147 PRELEILQALSTGASNKQIAQRLFISEATVKTHLIHVYQKLGVETRTAAVSAARERKLI 205


>gi|56695286|ref|YP_165634.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
 gi|56677023|gb|AAV93689.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
          Length = 239

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L  +               L + +   H +    D   +Q       + +P        
Sbjct: 10  ILEDLDATSALEDLERVTIKLRDTLEIDHIVYHWVDSAGDQYG----CATYPKAWQERYL 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAG-MDNRYCSLTFDVARI 140
                +   V+    + F PV     +                G  +  Y          
Sbjct: 66  ERNYHRIDPVILGCFQRFHPVDWKRLDWSGKVAKAFLQDALKHGVGNQGYSIPIRGPNGQ 125

Query: 141 RIGLML--LFPKGRIILRDRL--WEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECL 194
                +  +           +   ++ L+A +               +   L+ REV+ +
Sbjct: 126 FALFTVNHVCDDQAWSEFTEIYGRDLILIAHFFNRKALEFERSRQPDQPRNLSPREVDAM 185

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T ++ G +  ++A  L IS +T+  YI S   K      + AIA A+   ++
Sbjct: 186 TLLALGYSRAQVAHSLSISEHTLRVYIESARFKLGALNTTHAIATAMSRGLI 237


>gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 207

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 19/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +       + L  +I    +              G      +         +D  +    
Sbjct: 1   MDDHFVVREGLKLIIETSDSFQIIGEA-----ANGEEALSFIEKKKPDVILMDLNMPKMS 55

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + +  +   +             +    ++     +         Y     D   +  
Sbjct: 56  GLETIEALNKKQN--------HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFR 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L        ++  + + +I           K       ++  LT +E+  L  I+ G  
Sbjct: 108 TLEAAIRGEILLQPNIMEKI------VNYKRKEVYADKVEENNLTEKELFVLKAIARGNK 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 162 NKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 233

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 16/225 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV----RWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +D        + A  E    +  +       WD+ ++   D +  +D     V    
Sbjct: 8   ILLVDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKNLPDLV-ITDVMMPQVDGYQ 66

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             +K +     +    +F        + I       + Y S  FD   +   +  L  + 
Sbjct: 67  FLQKLREEPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVNNLLERR 126

Query: 152 RII----LRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGREVECLTWISEG 200
                    ++  +I  LA   A +                   +LT RE   L  ++ G
Sbjct: 127 ASAQTANGDEKTSDIAALAGQIAEIKAMLMGKNAIAKTTSVIKIDLTPREQSVLDLVARG 186

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +
Sbjct: 187 LMNKEIARDLSTSVRNVEKYVSRLFTKTGTNSRTELVRYALEHGL 231


>gi|302532669|ref|ZP_07285011.1| two component system response regulator [Streptomyces sp. C]
 gi|302441564|gb|EFL13380.1| two component system response regulator [Streptomyces sp. C]
          Length = 191

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 10/192 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             GA    L R        +D  +       L+  +A +        L     +    F 
Sbjct: 4   ADGAQAVRLARELRPDVVLMDIRMP------LLDGLAATRAISADQDLADVRVVMLTTFE 57

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                        + +     +   +   +  +     ++       +      +     
Sbjct: 58  LDEYVFEAIRAGASGFLVKDTEPEELLRAVRAVVEGDALLSPGVTRRL----IAEFAARS 113

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE E +  +  G +++EIA  L +S  T   +++  M K   + R+
Sbjct: 114 RRPAPAEGLERLTDREREVMALVGTGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRA 173

Query: 235 GAIAYAVRNNIV 246
             +  A    +V
Sbjct: 174 QLVVLAYETGLV 185


>gi|296136908|ref|YP_003644150.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294341079|emb|CAZ89476.1| putative Nitrate/nitrite response regulator protein narL [Thiomonas
           sp. 3As]
 gi|295797030|gb|ADG31820.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 225

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 65/244 (26%), Gaps = 27/244 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + I+L  +       +  L   +  +  +                          L  
Sbjct: 3   PDIRILLVDDHALFRRGLVALLGEAPAMQVVGQAGDAGEALR---------------LAT 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD+ +      D V  +                 L   V     +       
Sbjct: 48  QLQPDIILLDNHLPGVRGIDAVESLRQ--------AAPASRVLMLTVSEEAADLGAALRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ----ANMFKSYDVHWG 181
             + Y   T +   +  G+        +I  D   ++           +           
Sbjct: 100 GASGYLLKTCETDELIGGIQRALRGEVVIGADMTAKLAQAFIAPETTDSAKEALPANAQS 159

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ RE +    I+ G ++  IA  L I+  TV  ++ SI+RK    +R     YA 
Sbjct: 160 EKTPLSPRERQIAAAIARGASNKVIARELDIAETTVKVHVQSILRKLDLSSRVQIAVYAS 219

Query: 242 RNNI 245
            + +
Sbjct: 220 EHGL 223


>gi|255532626|ref|YP_003092998.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345610|gb|ACU04936.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 224

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  +     S +  L    + +  +            +                  
Sbjct: 10  LNLLLAEDHNVVRSGIKKLLEADEAINIVAEAINGAQALELIR--------------DNG 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L+  +     +           +   +               
Sbjct: 56  SIDLLLTDLNMPGINGISLISEVKNFNPN--------VKVVILSMHDDEKYVAQAFQAGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   L  +   G  I          + +       S         + +
Sbjct: 108 SGYLLKNVDAEEMLFALKYISRGGSYI---CAALSMSMLSKVLKRINSTVAVAETAIDFS 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+EG T+ E+A  L IS+ TV  +  S+  KT  +  +  I YA+ ++I+
Sbjct: 165 SREIEILELIAEGLTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALIRYAMVHDIL 223


>gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 263

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +D      ++           +            +                 
Sbjct: 48  PVRVLLVDDDAHIRMVIAQELMAEPRTLLVAQAGSLREGRKAIKQ--------------- 92

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    +D  +     F+L+  +          V+         V     + +      
Sbjct: 93  HEFDVMLVDLHLGDGEGFELLDYLKTVRPAAEAVVI--------SVMENDDQVLRAFELG 144

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y S           ++ +   G  I  +    +                    D  L
Sbjct: 145 ATGYLSKNSWFGSYSQAVLQVMNGGASITPNLARRLLQRFDTTRGDAPKRRQPDDAD-RL 203

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE E L  ++ G TS EI   L IS  TVN +I +I RK   +TR+ A+ +A    +
Sbjct: 204 SAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQAVRFASLRGL 262


>gi|239979954|ref|ZP_04702478.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291451807|ref|ZP_06591197.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354756|gb|EFE81658.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 235

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 28/243 (11%)

Query: 7   QVNIVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +V +VL  +    RT   + +    +    ++     V                   ++ 
Sbjct: 18  RVRVVLVDDHRMFRTGVQAEIGQTEETGVEVVGEADDVD--------------QAVTVIT 63

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   LD  +      +++R  A         V      L   V     + I    G
Sbjct: 64  ATRPEVVLLDVHLPGGGGVEVLRRCAPLMGAAERPV----RFLALSVSDAAEDVIGVIRG 119

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
               Y +     A +   +  +     +           LA +  + F S D     +  
Sbjct: 120 GARGYVTKNITGADLVDSIFRVQDGDAVFSPR-------LAGFVLDAFASTDAPPVDEDL 172

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  I+ G    E+A  L IS  TV +++++++RK     R     +A   
Sbjct: 173 DRLTQREREVLRLIARGYAYKEVAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATAR 232

Query: 244 NIV 246
            +V
Sbjct: 233 RLV 235


>gi|238062472|ref|ZP_04607181.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884283|gb|EEP73111.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 226

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 12/226 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           S+V  +    D     +     ++    +       G      V+        LD  +  
Sbjct: 6   SWVIRVLVVDDEALVRMGFQHILNAADGIQTAAAVSGDQALQAVQELRPDLVLLDIRMPD 65

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D +  +    +     V+          F T              +     D  ++
Sbjct: 66  V---DGLTILQSIRRLPAPPVVA-----MLTTFDTDEYVTAALRAGAAGFLLKDTDPEQL 117

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  L     ++       +              +        LT RE E LT +++G
Sbjct: 118 GHLVRTLAAGDTVLASKVTRTV----VDGFLRSGGDEHAVRAVQRLTEREREVLTLLADG 173

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EI   + +S  TV +++++I+ K     R  A   A R  ++
Sbjct: 174 LSNSEIGGRMFLSAGTVKDHVSAILTKLGVDNRVRAALLAERAGLL 219


>gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 223

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 24/235 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P   + +AR       ++    +   T   G     +          LD  +  
Sbjct: 1   MVVDDHPMWREGVAR------DLTEAGHLVVATSGEGRQAVRVAPAARPDLVVLDLQLPD 54

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +++R +           L +   L           +         Y   +   A  
Sbjct: 55  ISGVEVIRGLRA--------ALPQVRVLMLSASGEQQSVLDAVKAGATGYLVKSAAPAEF 106

Query: 141 RIGLMLLFPKGRIILRD-------RLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGRE 190
              +        +               +   A   A          G+D +   LT RE
Sbjct: 107 LDAVRRTAAGEPVFTPGLAGLVLGEFRRLAAGADESAGGRGPVAATAGRDTDAPRLTDRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  +++G +  +IA  LG+S  TV N++ + + K     R     YA+   +
Sbjct: 167 TEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 221


>gi|182440060|ref|YP_001827779.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326780729|ref|ZP_08239994.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178468576|dbj|BAG23096.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326661062|gb|EGE45908.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 216

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 68/222 (30%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GA+   LV         +D  +      
Sbjct: 5   VLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVLPLVNRLRPDVVAMDVRMPLMDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +  +       V   P  L    F              + +       A I   +
Sbjct: 65  EATRLVLRT-------VPHPPKILVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L+     ++    + ++       A               LT RE   L  ++ G ++ 
Sbjct: 118 RLVAEGESLLFPAAVRQLA------AEYGTDKARAALDRAALTEREAAVLRLMARGLSNA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +   TV  +++S++ K   + R+ A+  A  +  V
Sbjct: 172 EIAAALVVGTETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213


>gi|111220151|ref|YP_710945.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147683|emb|CAJ59339.1| Putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 213

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L  +I  +  +             G +   +VR        LD  
Sbjct: 2   IRVVIADDQPLVRLGLRVLIETEDDLDLVGEAE-----DGRAAVDIVRATRPDVVLLDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +           L     +    F              + +     + 
Sbjct: 57  MPVVDGLAALRTIVA------DPRLAATRIVIVTTFEVDEYVFEALRAGASGFVLKDTEP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++       +           +   V       LT RE E ++ +
Sbjct: 111 ADLLRAIRVVAAGESLLSPTVTRLV------IDTFARRPAVTAPDLSGLTVREREVMSLV 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++DEIA  L IS  T   +++ +M K A + R+     A +  +V
Sbjct: 165 GRGMSNDEIAARLVISPATARTHVSRVMVKLAARDRAQLAVLANQAGLV 213


>gi|300897182|ref|ZP_07115632.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300359034|gb|EFJ74904.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
          Length = 216

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 63/228 (27%), Gaps = 34/228 (14%)

Query: 14  REDEQR--TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           R+D      + +          A+++ L+  +       +     G      +     Q 
Sbjct: 16  RQDPIMITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQV 70

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +      +L+  +            +    +   V  +              + 
Sbjct: 71  CICDISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFL 119

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S       +   +  +   G  +  D   ++                  G+   LT RE 
Sbjct: 120 SKRCSPDELISAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRER 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +    +++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 164 QVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 211


>gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 244

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 76/238 (31%), Gaps = 19/238 (7%)

Query: 26  LPTRSDLLARMIPLDCTVS-WTMRMYALTEYVGASHFLLVRWDLFQEQKL--DSIVSSDW 82
           L    D+    I  +      +  +    E +      +      +        I + + 
Sbjct: 7   LIKLLDIADTCIRANSNSDSISDILTKTNELIPFQAATIAIDTNIEFALTAKQQIFTQNL 66

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-----------TLPENITPPAGMDNRYC 131
             +        +      +L         V                + ++      +   
Sbjct: 67  SEEWQEIYFQRKFFNQDPILSAIANTTSAVDWRTATSQANYISDDFKQMSKKYVGSDGLS 126

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTG 188
            L          + L+ P+   +  +    I  +A +   +F     +  K      L+ 
Sbjct: 127 ILV-KTDVGSTLISLVIPE-SSLDAEHNQLIEYIAPHIHEVFNRQGENIRKSLWKPNLSK 184

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L W  EGK++ + ++IL IS  TV  + ++I +K     RS AIA A+   +V
Sbjct: 185 RELEVLNWAKEGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIARAIHFGLV 242


>gi|72161807|ref|YP_289464.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915539|gb|AAZ55441.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 214

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +     + +  +      +  +               L               
Sbjct: 2   VRVVVAEDQAAVRAGLVMILETDPGITVVAEAADGQEAVDTCLRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +A +  D           L    F              
Sbjct: 47  RPDVALMDVRMPRRDGISATQELAAAGID----------VLVLTTFDLDEYVFGALRAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             +     + A +   +  +     +I       +  +  + A   +  +       E L
Sbjct: 97  AGFLLKDVEAADLLKAVHTVARGEGMIAPAVTRRL--INEFAATRPREQEKADPAILERL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I EG ++ +IA  L I+  T   +++ I+ K   ++R  A   A    +
Sbjct: 155 TPREREVLACIGEGLSNQQIARRLYITETTAKTHVSRILTKLDLRSRVQAAIVAREVGL 213


>gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
 gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99]
          Length = 240

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 72/228 (31%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            + ++ A    +G   +  V         +  +  +++P + V+            V+  
Sbjct: 11  ISKQLEAALSDLGEFIWAYVVLSKKDMSCIFGV--TNYPGEWVKQYREKGLQYTDPVVIT 68

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P                   +     G+ N Y  +  D     + L   F    
Sbjct: 69  SLNRLTPFAWDENLLAGSGFRFSKLFDRAREFGVTNGYTFVLHDYNNNLVTLSFTFTPEC 128

Query: 153 IILRDRLW-----EIGLLAAYQANMFKSYDVHWGKDF---------ELTGREVECLTWIS 198
                  +     EI LL A     + +      K+            T RE E L W S
Sbjct: 129 RAEATETFIKNKGEISLLLASVHETYLTLTSLSEKNASRSRSENASRFTERENEILYWAS 188

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  E A+ILGI   TV  ++++I++K        AI   +   ++
Sbjct: 189 VGKTYPETAMILGIKTCTVKFHMSNIVKKLGVANARHAIRLGMELQLI 236


>gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 231

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 75/244 (30%), Gaps = 25/244 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +   +IVL          + H    S     +                    G     +V
Sbjct: 1   MSSTSIVLVNAHALFREGLRHHLANSTEFHVIGEASN---------------GQQAIQVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    ++  +      ++ R +  S        +   +           E +    
Sbjct: 46  DLLDPDMVVMEVDLPGVNGLEVARAIKRSHPHIR---IVLLSSTMDG-----QEVVKAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGK 182
                         ++   L  +      I    L   ++            + +     
Sbjct: 98  AGIAACVPRNIAPEKLMQTLHQVRRGNYPINDLVLSSPDVAAQVLNAFRQMAAEEDTQSI 157

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ L  ++ G+T+ EIA +L IS  TV N+I+SI+RK A   R+ A+ YA+R
Sbjct: 158 YSPLSPRELQVLELVAAGRTNKEIAKVLDISNQTVKNHISSILRKLAVNDRTQAVVYAMR 217

Query: 243 NNIV 246
              +
Sbjct: 218 RGWI 221


>gi|239945267|ref|ZP_04697204.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991728|ref|ZP_04712392.1| two component LuxR family transcriptional regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448730|ref|ZP_06588120.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351677|gb|EFE78581.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 250

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 15/237 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R                ++  D                GA     VR        +D
Sbjct: 3   EPLRVLIADDQTLVRTGFRLILRADGIDVVAEAAD------GAEAVEGVRRTRPDVVLMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNV------LQRPTELFCPVFHTLPENITPPAGMDNR 129
             +      +  R +  +                RP  +    F          +   + 
Sbjct: 57  VRMPELDGLEATRRILAAPPALPSTRSGEAACADRPRVIILTTFDLDRYVYAALSAGASG 116

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +        ++   +  +     ++       +       A               LT R
Sbjct: 117 FLLKDVTPEQLTAAVRTVRTGDALLAPAITRRL---VRRFAQHGSGTAALHRDLASLTPR 173

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E    ++ G ++ E+A  L ++  TV  ++A I+ K   + R  A+  A    +V
Sbjct: 174 ELEVFGLLARGLSNAELAARLHLAEATVKTHVARILAKLGLRDRVQAVIVAYETGLV 230


>gi|239906985|ref|YP_002953726.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239796851|dbj|BAH75840.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 226

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R +           LA ++  D               VG     L R        LD  +
Sbjct: 7   RIAIADDHGLMRQGLAAILAADPRFEVVGEAADAAGAVG-----LARDLAPDVLLLDVGL 61

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           +     D+   +A                +   +   L             Y        
Sbjct: 62  AGGSGVDVAGRVAGLA--------PECRVVMVTMHARLDLVAACFRAGAMGYVVKDSAAT 113

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +    R +      ++ L     A   +           LT RE + L  ++
Sbjct: 114 SLVAAIEAVLRGERYLDAAITPQVLLRLDEYA--ARKTGPRDPAYDSLTRREQQILRLLA 171

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG++   IA  L IS+ TV N+ A+I  K      +  + YA R  IV
Sbjct: 172 EGRSVAAIATELFISKKTVENHRANICGKLGLANLAELVRYAARLGIV 219


>gi|268593225|ref|ZP_06127446.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131]
 gi|291311274|gb|EFE51727.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131]
          Length = 208

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +     S  + L T    ++ +            +  L               
Sbjct: 2   IKIALVDDHIVVRSGFAQLLTLEPDISVVGQYANAQEAWPNLLNL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +    L+  +   + D           +   ++ T     +      
Sbjct: 47  DIDVAIMDISMPDENGLQLLSRLRQKKPDF--------RTIILSIYDTPAFVQSALDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +   G  +  D +  +           +          ELT
Sbjct: 99  SAYLTKRCGPEELVQAVRSVHQGGCYLCADAMRAL-----------RHSPQQQQSLQELT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +  G +   IA  L +S  TV+ + A+I+ K   +     + YA+ +N++
Sbjct: 148 PREREVFDLLVAGLSVKVIAEQLELSHKTVHVHRANILGKLQCENTIDLVHYALEHNLI 206


>gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 236

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 66/234 (28%), Gaps = 30/234 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           ++ +D   +    +    E+ G                  +       D ++      + 
Sbjct: 4   ILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNPPDLVVSDVLMPEMDGLEF 63

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +            +    +F      L + I   +   + Y +       +   +  
Sbjct: 64  CRRLRNI------PNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEA 117

Query: 147 LFPKGRIILRDRLWEIGLLA----AYQANMFKSYDVHWGKDF-----------ELTGREV 191
           L  +   I  + +  +         + AN   +                     LT  E 
Sbjct: 118 LLERSHRIHAEIVRLMQQATAIAPGHLANQLSTSASAENSKTLAQVGAKPKPLPLTPAEE 177

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
                + +G T+ EI+  L IS  TV  +++SI+ K     RS  + +A     
Sbjct: 178 RVFWQVIQGLTNKEISDRLFISPRTVQTHLSSILHKLKLHNRSQLVRFAYEQGY 231


>gi|297161064|gb|ADI10776.1| two-component system regulator [Streptomyces bingchenggensis BCW-1]
          Length = 226

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 10/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPF 84
           +          + L   +S    + A+ E   +     L          +D  +      
Sbjct: 5   VLIADGHALARLGLLTLLSSAPGLRAVGEAADSDGARALAAAHSPDVILMDISLPH---- 60

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +A ++        + P  +      +  E  +                 +    +
Sbjct: 61  --LGGIATTQHIVEAAPARPPRVIVTASEVSDEEIQSALRVGAAGILLKDTSPQKTIASI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +           +  +     Y      + +        LT RE E L  +++G+++ 
Sbjct: 119 SAVATGDMAFSPSVMERLINAYTY---RATATETAGSTLAMLTMRETEVLRHVAKGRSNS 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++   M K    +R+ A+A      +V
Sbjct: 176 AIARELKISEATVKTHLNRAMTKLGITSRAQAVALGYECGLV 217


>gi|294636769|ref|ZP_06715108.1| response regulator UvrY [Edwardsiella tarda ATCC 23685]
 gi|291090028|gb|EFE22589.1| response regulator UvrY [Edwardsiella tarda ATCC 23685]
          Length = 218

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C         +               +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V      +   +    P          
Sbjct: 47  CADIVLMDMNMPGIGGLEATRKILR--------VKPEVKVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L      +              L+
Sbjct: 99  FGYLSKGAAPQEMISAIRAVYSGQRYIASDIAQQMALSQLAPQSE--------SPFGCLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I+ G    EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 151 ERELQIMLMITNGSKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 225

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 17/214 (7%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           M  +T+ +G  H+ LV   +  +  + S+   D+P D V             + +     
Sbjct: 5   MAEITKAMGFRHYALV-HHVDLKPAVRSVHIVDYPQDWVERFQARRLYASDPIHRASHRT 63

Query: 109 FCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                 +  +                  AG+ + +         +          G ++ 
Sbjct: 64  NVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPGELNGSCSFAMAAGEMLD 123

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGI 212
             +L  + L+ ++     +          E   LT R+ EC+  ++ GKT  EI+ ILGI
Sbjct: 124 HRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVALVARGKTDWEISQILGI 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + TV  ++     +     R+     A+    +
Sbjct: 184 GQETVIQHVKDARDRYGVTKRTLLAIRALFEGQI 217


>gi|262201684|ref|YP_003272892.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262085031|gb|ACY20999.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247]
          Length = 231

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 67/236 (28%), Gaps = 23/236 (9%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  +     S V         L  +            + A                  
Sbjct: 18  VFLVDDHAVFRSGVRAELAGEPGLRVVGEAGTVGEAVAGIVATA---------------P 62

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  + +     ++R        +   V    +           + I         
Sbjct: 63  DVVLLDVHMPAGGGVAVLRG-VTDAIGESAPVFLALSVS-----DAAEDVIATIRAGARG 116

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y + T   A +   +  +     +        +  L ++             +   LT R
Sbjct: 117 YVTKTISGADLADAVRRVADGDAVFSPRLAGFV--LDSFTGKSSAPEPPLDPELDSLTRR 174

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  ++ G T  EIA  L IS  TV  + ++++RKT    R+    +A   +I
Sbjct: 175 ELEVLRLLARGYTYREIAEELFISIKTVETHASNVLRKTQQSNRNALTRWAATRHI 230


>gi|16759521|ref|NP_455138.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142706|ref|NP_806048.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052771|ref|ZP_03345649.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425256|ref|ZP_03358006.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582337|ref|ZP_03364163.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213622215|ref|ZP_03374998.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647052|ref|ZP_03377105.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865277|ref|ZP_03387396.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289823975|ref|ZP_06543574.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298756|pir||AE0570 probable transcription regulator (FimXZ protein) fimZ [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501813|emb|CAD05031.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29138337|gb|AAO69908.1| probable transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 210

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 49  ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L        + +N       H   D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKIILSGYSFFPSETLN-------FISNTRPPKGGHH--DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 200

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDISIMDIEMPIQSGLDVAETLKKEKS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
 gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342]
          Length = 207

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 19/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +       + L  +I    +              G      +         +D  +    
Sbjct: 1   MDDHFVVREGLKLIIETSDSFQIIGEA-----ANGEEALSFIEKKKPDVILMDLNMPKMS 55

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + +  +   +             +    ++     +         Y     D   +  
Sbjct: 56  GLETIEALNKKQN--------HTPIIILTTYNEDELMLQGIELGAKGYLLKDTDRENLFR 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L        ++  + + +I           K       ++  LT +E+  L  I+ G  
Sbjct: 108 TLEAAIRGEILLQPNIMEKI------VNYKRKEVYADKVEENNLTEKELFVLKAIARGNK 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 162 NKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|325916009|ref|ZP_08178302.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537819|gb|EGD09522.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 213

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 64/224 (28%), Gaps = 23/224 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   ++    M  + +   G                +D  +    
Sbjct: 8   TDVLVVDDHPLLRDGLSAMLAAEHDMRVVGDAEDGEQAVACYASLRPDVVLMDLQMPRVD 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +          V      +    +      +         Y   +     +  
Sbjct: 68  GVEAIQRIRR--------VDPAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVD 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R               +              D  L+ RE E L+ ++ G +
Sbjct: 120 TIRDVRRGQR--------------RHVPASVAENIAAHVLDDALSARETEVLSLVATGCS 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L IS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 166 NKQIGNALSISEETVKAHMKNILAKLGVRDRTHAVTVALRRGIL 209


>gi|37676847|ref|NP_937243.1| response regulator [Vibrio vulnificus YJ016]
 gi|326424276|ref|NP_762663.2| nitrate/nitrite response regulator protein [Vibrio vulnificus
           CMCP6]
 gi|37201391|dbj|BAC97213.1| response regulator [Vibrio vulnificus YJ016]
 gi|319999662|gb|AAO07653.2| Nitrate/nitrite response regulator protein [Vibrio vulnificus
           CMCP6]
          Length = 210

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    G         + 
Sbjct: 5   RVMLVDDHPLMRRGINQLLSFEEQFEVVAEASN---------------GTEAVAKAHENE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +         +++         V  +  +         +
Sbjct: 50  LDLILLDLNMKGMSGLDTLKALRADG--CEASIV------ILTVSDSPADIEAIVKAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +                 A      + +     ELT 
Sbjct: 102 GYLLKDTEPDELVELLEKAHLGDKAYSSV-----------VAKYLLQREENTDVFDELTE 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 RERQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLFLER 205


>gi|103488066|ref|YP_617627.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98978143|gb|ABF54294.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis
           RB2256]
          Length = 250

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++           +   T  +G   F L            S++  D+P            
Sbjct: 13  ILTASSIDHLHEALTRATRDMGFDRFALSLEIGCGADSSTSLLIHDYPASWADVYIGFNL 72

Query: 96  DKYYNVLQRPTELFCPVFHTLPENI-------------TPPAGMDNRYCSLTFDVARIRI 142
                V +               ++                 G+ + +         +  
Sbjct: 73  AASDPVRRAAERSVLGFGWRNILDLVPMTEIEKTTFETGRRHGLADGFTVPRHLPGDVTG 132

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEG 200
               +   G+ I    L    +L A      +       +  +  LT R+ +C+ W + G
Sbjct: 133 SCSFVTGLGKSIPHAMLIVAEMLGAMAIASARQLSGWTSRSVQPRLTDRQRDCVLWAARG 192

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT  EI+ IL IS  TV  ++     +  T  R+  I YA+ + ++
Sbjct: 193 KTDWEISRILDISHETVIQHLKDARERYETHKRASLILYALYDGLI 238


>gi|149192492|ref|ZP_01870678.1| response regulator [Vibrio shilonii AK1]
 gi|148833673|gb|EDL50724.1| response regulator [Vibrio shilonii AK1]
          Length = 214

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E   + +  +      +      D          +               +
Sbjct: 2   INVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEEAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HVDVILMDMNMPGIGGLEATKKILRHNPDI--------KIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + L+    R I  +   ++ L         +          +L+
Sbjct: 99  AGYLTKGAAPDEMVNAIRLVNSGQRYISPEIAQQMAL--------SQFSSASENPFKDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 151 ERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGML 209


>gi|227833657|ref|YP_002835364.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184663|ref|ZP_06044084.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454673|gb|ACP33426.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 215

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 70/234 (29%), Gaps = 24/234 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +++     +  +   +  +  +                    G      V   
Sbjct: 2   ISVVLVDDEQALRRGIRFILEGAADIEVVAEASN---------------GREGVARVLDL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +  S  D    V+          F T    +       
Sbjct: 47  QPDVVLMDIRMPVMDGIEAAGKLRASAPDI--PVV------MLTAFDTDEFIVDALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T +   + + +       +++    L  +  L   +    +   +       L+
Sbjct: 99  MGFLLKTIEPEGLVLAVRAAATGQQLLSPKALKNLLALKRPEPAPAEPEALEARPLEGLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            RE E    +++G  + EIA  L +S  TV  +I  I+ K     R   IA AV
Sbjct: 159 QRENEVAQLVAQGLDNQEIAGQLYVSVTTVKTHIKHILDKLGGTNRVH-IAIAV 211


>gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 67/234 (28%), Gaps = 15/234 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ E       V   P   D +AR    +            T     +   + R      
Sbjct: 1   MSDEPRISVMVVDDHPIWRDGVAR-DLTEHGFDV-----RATAPDADAALRIARTVQPDV 54

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  + S    D  R +           L     L         + +       + Y 
Sbjct: 55  VLMDLNLGSTSGVDATREITA--------ALPSTKVLVLSASGEHKDVLEAVKAGASGYL 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +        +        +       A+              LT RE 
Sbjct: 107 VKSASAVELVDAVHRTAAGDPVFTAGLAGLVLGEYRRMADASSEDAAGAEPP-RLTERET 165

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  +++G T+ +IA  L +S  TV N++ S +RK     R     YA+ + +
Sbjct: 166 DVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 219


>gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 214

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 79/224 (35%), Gaps = 24/224 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL------------VRWDLFQEQKLDSIVSSDWP 83
           MI ++       R+ ++   +G +   L            +         +D  +     
Sbjct: 1   MIVVEDEPLIRNRLESILHGLGYADDALIFAATLGQARARLAEHPVAMALVDLGLPDGSG 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRI 142
            +L+  +  +        +            +  + I +      N Y     D   + +
Sbjct: 61  IELISQLRAA-----DPGMGILVISA----WSTEDAILSALRAGANGYVLKERDDLEVTL 111

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +   G  I       I  +A  Q +           +  L+ RE++ L  +++G T
Sbjct: 112 SIRSVLRGGAPIDPFIARRI--IAELQPSQPTEAHKEMPPEALLSAREIQILKLVADGMT 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +SR TV  ++ +I RK A  +R+ A++ A    ++
Sbjct: 170 NREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARGLL 213


>gi|322434206|ref|YP_004216418.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161933|gb|ADW67638.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 208

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 38/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  + +     +  L + +D L  +  +                 GA    L   
Sbjct: 4   PIRIMLVEDHQMVRQGLVSLLSSTDELEVVGAVGD---------------GAQAVELFAT 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +  +  S              +    +    +        
Sbjct: 49  LRPDVTLMDLQLPKLGGVEAILKIRQS--------FPEARIIVLTTYDGDEDIYRSLQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   ++ +      I          +A   A+             +L
Sbjct: 101 AKGYLLKGMPFDELLKAILAVHAGKSRIPS-------PIAEKLADRLSGQ--------QL 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+  L  I  G+ + +IA  L IS  TV  ++ +++ K     R+ A   A++   V
Sbjct: 146 TARELSVLERIVAGRANKDIAADLFISEATVKTHVNNLLSKLGVADRTQAATIALQRGFV 205


>gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 210

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 31/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D      +    +    L  +   +                G +        
Sbjct: 1   MRILIVEDDPLMQLGLEQALSEHSDLEIVGQAED---------------GYAGVQKALEL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +     + +         +         E +   +   
Sbjct: 46  KPDLIVMDIGLPRLDGIGATKQIKEELPNIH--------VVMLTSHTQQTEVVAALSSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + YC     + R+   +         +         L+A    +  K+       +   L
Sbjct: 98  DAYCVKGASLDRLLAAIDAAKDGATYLDP-------LIARLVLSNLKAPIPQQNLNISNL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I EGK+++EIA  L +S NT+  ++  IM K A   R  A   A+R+ IV
Sbjct: 151 SERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGIV 210


>gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 216

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 66/218 (30%), Gaps = 16/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R+  +D        + +L E       VG +        +    + D ++          
Sbjct: 9   RLALVDDHAILRQGLRSLLEREDDLVVVGEASSEAEAEAMVAAVEPDVVLLDLKLSAGSD 68

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              LS   K          L    F      +         Y     D   +   +  + 
Sbjct: 69  FEGLSLCAKLSAAHPDLGLLVLTTFLDEDLVVRAVHAGARGYVVKDVDTTELVRAIRAIS 128

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                        +           +S         +LT RE+E L  ++ G ++++I  
Sbjct: 129 SGDSAFDSRSAAAV----------VRSLSGRTEPREQLTDREIEVLRLLAAGLSNNKIGE 178

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  T   ++++IMRK     R+ A+  A +  ++
Sbjct: 179 KLFISATTAKFHVSNIMRKLDVSRRAEAVYAASKRGLI 216


>gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
 gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
          Length = 215

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + ++ +    D L  +                    G     LV   
Sbjct: 3   IRVALIDDQALFRAGIAMVVGSQDDLTVVGEAGD---------------GGEAVALVETS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     +    VL          F              
Sbjct: 48  RPDVVLMDVRMPRVDGVEATRLIVARFGEDAPRVL------VLTTFDLDELAADAIEAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +    +++           A ++    ++          LT
Sbjct: 102 SGFVLKETRPEFLLAAIRAVADGTQVVAAGATR-----AVFERFRERATATPGADYERLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G ++ EIA    +S  TV  +++ I+ K A + R   + YA  + ++
Sbjct: 157 PREREILLRAAQGLSNAEIAAAEFLSEATVKTHVSRILGKLALRDRVQLVVYAYEHGLL 215


>gi|99078080|ref|YP_611338.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035218|gb|ABF62076.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040]
          Length = 239

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 65/233 (27%), Gaps = 21/233 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
            +L  +            +      V   H      D            S  P       
Sbjct: 9   AILELIESSANLEEIGEVLAQFRNLVDLDHVSYRWVDRSGSVSG----CSTLPTAWQDRY 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTFDVAR 139
           +     +   V+      F PV     +     A             +  Y       A 
Sbjct: 65  SAMSYHRIDPVVIGCYTAFHPVDWRDLDWSARLASAYRKDSIAFGVGNQGYSVPVRGPAG 124

Query: 140 IRIGLMLL----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVEC 193
               L +             +    ++ LLA Y       ++V      +  L+ RE E 
Sbjct: 125 QYAILSITKSCEGEVWDKFTQKHSRDLILLAHYVNRRALEFEVSYYPTPEQPLSMRESEA 184

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L+ ++EG +    A  + IS +T+  YI     K   +  + A+A AV   ++
Sbjct: 185 LSLLAEGMSRARAAEAMAISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGLI 237


>gi|239930346|ref|ZP_04687299.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291438691|ref|ZP_06578081.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291341586|gb|EFE68542.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 219

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              I+L  +       V  +      L  +   D       +                  
Sbjct: 6   PTRILLADDHALVRRGVRLILDGEPDLTVVAEADDGAEALEQAR---------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 + D  +       L    A  E        +        ++             
Sbjct: 50  ----VHRPDLAILDIAMPRLTGLQAARELSHTLPETRIL---VLTMYDNEQFFFEALGAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +             +    +  +       A   ++          +
Sbjct: 103 ASGYVLKSVADRDLVEACRATMRGEPFLYPGAVNALIRNYLDLARDGRNLPPKA-----I 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++EG TS +IA +L IS  TV  + A+++ K   K R     YA+R  ++
Sbjct: 158 TDREEEILKLVAEGNTSQQIADLLVISPKTVERHRANLLSKLGLKDRLELTRYAIRVGLI 217


>gi|145299701|ref|YP_001142542.1| two-component system nitrate/nitrite response regulator NarP
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852473|gb|ABO90794.1| two-component system nitrate/nitrite response regulator NarP
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 212

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 71/235 (30%), Gaps = 31/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L    + +  +                    G     + +   
Sbjct: 7   SVLVVDDHPLMRKGIVQLLALEENIEVIGEASN---------------GTDAVAMAKESE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +   E             +   V     + +       +
Sbjct: 52  PDLILLDLNMKGLSGLDTLKALRTEEVT--------SRVVILTVSDARQDVVALLKAGAD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L  +    +I+       +              D    K   LT 
Sbjct: 104 GYLLKDTEPEMLLAQLADVMTGKQILSEPLRPYL--------ENIYELDHLQQKLESLTS 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  I++G ++ ++A +L IS  TV  ++ S+++K   ++R  A    +  
Sbjct: 156 REMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVEAAVMYLEQ 210


>gi|167032675|ref|YP_001667906.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166859163|gb|ABY97570.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 219

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L         +   D       ++  L                
Sbjct: 4   RLLLVDDHSLIRAGVRALVCDIPGYDVIGEADDGSQLLEQVRTLA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +  S              L   +       +       +
Sbjct: 49  PDIVLLDISMRSTSGLDALTQLRASGST--------CKVLILSMHTDPDLIMRALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +    R +          +        K      G+   LT 
Sbjct: 101 GYLLKDTSATELEQALSAVRNGERYLSPAIA---HTVINQALRHTKQGKQSAGERHNLTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIATGLGLSIKTIETHRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|29654109|ref|NP_819801.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|153208494|ref|ZP_01946778.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154707387|ref|YP_001424215.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|212218270|ref|YP_002305057.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|29541375|gb|AAO90315.1| response regulator [Coxiella burnetii RSA 493]
 gi|120575950|gb|EAX32574.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|154356673|gb|ABS78135.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|212012532|gb|ACJ19912.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 216

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHVLIRRGMRLMLEQVKGIRIVGEASTGEEGLALRREKEPDVVMLDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R     +  +    ++                +         + + + D   +   +
Sbjct: 64  ELAR-----KLLRRDPEIKILVVTAM---EGELLPMRLLDVGVRGFITKSSDSGELERAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I       + L                    +L+ R++E L  +++G  ++
Sbjct: 116 RAVHSGQRYISSAIASRLAL---------SKTTPTKSPFDQLSHRQMEVLLLLAKGMKAE 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 167 EIAKQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQYGVI 208


>gi|323137329|ref|ZP_08072407.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322397316|gb|EFX99839.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 220

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 13/232 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +      R             LA ++ L+  +         T   G       R      
Sbjct: 1   MTEHQPIRIMIAEDQTVIRKALAALLALEADIDVV-----ATAADGEQAVSAARAYSPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D+ +         R +             R   +    F                Y 
Sbjct: 56  ILMDAKMPRMDGVAATRMILSDN--------PRTRVIMLTTFDNEELVYDAITAGAQAYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               + + I   +  +      +      +I        +  ++       +  LT RE 
Sbjct: 108 LKDSEESEILAAIRAVAKGEPRLSPSVAAKILAEFRRVKSPQRAASPSAEDEEPLTDREK 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L  ++ GK + EIA  +G++  TV N++++I+ K   ++R+     A+ N
Sbjct: 168 AVLAHVAAGKGNREIAREMGLAEGTVKNHVSTILAKLHLRSRTELAIRALSN 219


>gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17]
 gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17]
          Length = 224

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 64/231 (27%), Gaps = 14/231 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           + R   V   P     L  +      +             G     +V   +     +D 
Sbjct: 6   KIRIMLVDDQPIIRQGLTYIFNSQSDMEVVGEADN-----GKDAVKIVLRCIPDIVLMDV 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D  R +  S        L     +    F                Y      
Sbjct: 61  QMPQATGIDATRNIVQS--------LPDTKIILLTTFDVQDYVFDGIRAGAAGYLLKDTQ 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLT 195
              +  G+  +     +       +         +   +         E LT RE+E L 
Sbjct: 113 TKELLDGVRSIQRGATLYNSMTAKQALAKIINSRDNISTNQPKASSFIEPLTDREIEILQ 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ GK + EIA IL IS   V  ++ +I +K     R+ A+   +   +V
Sbjct: 173 LIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICMQLV 223


>gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 228

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  + +     +       D  A ++                        +       
Sbjct: 3   ILVADDHKLVRDGLKPFLHELDASAEILDAANLGEALS--------------VGATAPSL 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD ++        +  +          V+                 +       + 
Sbjct: 49  GLILLDLMMPGMDGLKGLESVRKQ--FPNVPVVIVSGFST------REHVVAAVQAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWE---IGLLAAYQANMFKSYDVHWGKDFEL 186
           +   T     +   L L+    + +     +E   + +                    +L
Sbjct: 101 FIPKTVSGTAMVNALRLVLSGEKYLPSSSFFEDVTVHMPMMPLQQRPTRTGEIPAPFDKL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE E L  + EG+T+ EIA+ L +   T+  ++ ++ RK     R+ A+  A+ +  
Sbjct: 161 SRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVRIAMSSGW 219


>gi|110680018|ref|YP_683025.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456134|gb|ABG32339.1| transcription regulatory protein degU, putative [Roseobacter
           denitrificans OCh 114]
          Length = 216

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 68/241 (28%), Gaps = 36/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +++  +       +  +    + L+ +   +       R+          HF    
Sbjct: 7   DPIKVLIIDDHPMVAEGIQSILESYEDLSVVGSCNSARDAIARL---------DHFD--- 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +           +                 L   +  +     +  + 
Sbjct: 55  ---PDVILMDLNMPDMGGLTATEIVLERR--------PGTRILILSMHDSAEYISSALSH 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I+  +  +    + +       +                       
Sbjct: 104 GAMGYILKDVPTDEIKQAIDAVMAGDQYLCTGARGSLQPKEGEAREA------------- 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + +
Sbjct: 151 LTGREQTILLQLAQGKSNKDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGV 210

Query: 246 V 246
           +
Sbjct: 211 L 211


>gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 231

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 70/249 (28%), Gaps = 28/249 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + +  + E   + V            +  L  +     +   +          +
Sbjct: 5   ETAKIRVAVVDDHEMFRAGV------------IATLRDSFDIVGQAADV-----PGSVAM 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  V           +A S       V    +    P      +     
Sbjct: 48  IAQTKPQVVLLDVHVPGGEGGGGAEILAKSRPYSPTTVFLALSVSDAP-----QDVGAVI 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV----- 178
                 Y + T   A +   +  +     +        +                     
Sbjct: 103 RAGAQGYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSAFQGVPAAGSDGGADGAAR 162

Query: 179 -HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|23428533|gb|AAL11447.1| putative global response regulation activator GrrA [Serratia
           plymuthica]
          Length = 218

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C                         +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCR---------------GN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       Y   ++    +   +               
Sbjct: 47  TVDIVLMDMNMPGIGGLEATRKIVR-----YAPDVK---VIMLTIHTENLLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +      F  L
Sbjct: 99  AGYLSKGAAPQDVVNAIRSVQAGQRYIASDIAQQMAL---------SQLEPQTETPFSCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++GK  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMLMITKGKKVNEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|124266219|ref|YP_001020223.1| response regulator protein [Methylibium petroleiphilum PM1]
 gi|124258994|gb|ABM93988.1| response regulator protein [Methylibium petroleiphilum PM1]
          Length = 217

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 64/233 (27%), Gaps = 27/233 (11%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQE 71
           +  D  R      L    D       L   +     +  + E         L+       
Sbjct: 3   HEPDAPRV----RLLIVDDHPLVREGLRSRLQAIAWLEVVGEAGSAREALELIPQLHPGL 58

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +L R +A                L   ++                Y 
Sbjct: 59  VLMDVGMREINGIELTRLLAQRH--------PAVAVLVLSMYDNPEYVQQAMQAGARGYV 110

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 A I   +  +   G  +       +                       ++ RE 
Sbjct: 111 LKDAPSADIIAAIEAVCAGGTFLSPSVSKRLF--------------RGQAPKPLVSHRES 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L  +++G +S +IA  L +S  TV  +  +I RK   + ++  I YAV + 
Sbjct: 157 EILACLADGLSSKQIAERLDLSVRTVETHRQNIKRKLGIEGQAELIKYAVEHG 209


>gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 243

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 66/232 (28%), Gaps = 17/232 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               S  L  +            +  L E+ G SH  ++               + +P  
Sbjct: 4   HRRLSASLRTLQAAKHRADLQSALGELCEHYGVSHMTILVVCSGGRSGSYPYCCTTYPER 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLT 134
                      +   V+      F PV  +  +                    +      
Sbjct: 64  WTEKYVGKCFFEIDPVIDVIRWGFLPVDWSSLDRRSEQAHRLFKEARLYDIGPHGLTIPI 123

Query: 135 FDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTG 188
                 R  L     L       +    + E+ +L+ Y      S        +   L+ 
Sbjct: 124 RGPKGERCLLSVTSNLPGRHWSRLRASSIHELQILSHYLHETVLSASGLRGTDRYRNLSR 183

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           RE +C   ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 184 RESQCFQLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVARA 235


>gi|294012984|ref|YP_003546444.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292676314|dbj|BAI97832.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 248

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            L  +  +         M  + E +G  +F L +           I   ++P       A
Sbjct: 3   FLQCINQVRTRDDMGSVMRVIAEQLGFQYFALTQHVDVVAAGSGVIHIHNYPDRWADFYA 62

Query: 92  LSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVA 138
            +       V +                                 AG+ + +   +    
Sbjct: 63  ANALGITDPVHRACHMTSWGFRWTQMPTLIPLTSGDHRHLARGRQAGIGDGFTIPSNIGG 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLT 195
           +            R +  DRL    LL  Y  +  +       +      +T R+ +C+ 
Sbjct: 123 QPPGSCTFANEGDRPLREDRLLLAQLLGNYAFDAARRLWSMPRRAMTAPLITDRQRDCVQ 182

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           W + GK+  E + IL ISR TV ++I     +     R   +
Sbjct: 183 WAARGKSDWETSQILDISRETVTSHIKDACARYQVNKRILLV 224


>gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 214

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 30/236 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++          +  +  ++     +         + R                  D  
Sbjct: 1   MLVVDSHPIVRDGIEVVLGKAYAGIDVGGAADMAEASDRCGR---------------DRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D ++  D P   +  +  +  D           +      +            + 
Sbjct: 46  DLVLMDVMLPGDDPLPAMSEILRAHPD--------VRFVVFTALGSEARAADAIRLGASG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         I   +  +      I          L   +               ELT R
Sbjct: 98  YLLKWCSPDGIVQAVRRVMAGRVHIDPS-------LDGARIASAAGGRTPPSPVDELTRR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R   
Sbjct: 151 EKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206


>gi|297156887|gb|ADI06599.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 222

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 63/227 (27%), Gaps = 18/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   + LA  + LD   +   +  +  E V                 +D  +
Sbjct: 11  RVLLVDDHPLFREGLAAAVNLDDAFTVVGQAASAEEAV-----AEADRTEPDLVVMDLGL 65

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +  +              +   +       +         Y        
Sbjct: 66  PGRSGTEATRRILCAR--------PEARVVVMTMSEDDDSLLAAMRAGARGYLLKGAGRD 117

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  +   G +        +G L                    LT RE E L  ++
Sbjct: 118 EILRALHTVARGGAVFSPRMAERLGTLLGSFGTASAKEAFP-----TLTAREREVLELLA 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G    +IA  L ++  TV N++ SI  K   + R+ AI  A    +
Sbjct: 173 GGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRAREAGL 219


>gi|229505968|ref|ZP_04395477.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229605500|ref|YP_002876204.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|229356319|gb|EEO21237.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286]
 gi|229371986|gb|ACQ62408.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
          Length = 250

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90
           L++++       +    +     + G    +        +  ++ I       FD    +
Sbjct: 20  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDWFDDGENI 79

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIR 141
             +   KY  + +   E   P F              +  P G   +      F    + 
Sbjct: 80  DAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGLE 139

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISE 199
             + L   K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 140 GAVSL-GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|90425273|ref|YP_533643.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90107287|gb|ABD89324.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 226

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 61/241 (25%), Gaps = 27/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ I L  +     S +  L    D L  +               L             
Sbjct: 8   SRLRIFLADDHPVVLSGMKTLIAADDGLEMVGEATDGPEALRSALEL------------- 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      D+ +    +  D           L   V             
Sbjct: 55  --KPDVAVFDLSMPGMNGIDVAQKFLAARPD--------ARVLVLSVHEDGVYLRRLLKL 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +  G+  +   G  +      +    A  +               E
Sbjct: 105 GVAGYILKRSASDELIRGIHAVANGGIYLDPAIAGQ----ALGRPAPMAPAGNETSAISE 160

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L   S G ++  IA+ L +   +V  Y A  M K    +R   I +A+    
Sbjct: 161 LSTRELEVLRLASVGHSNKVIAIRLQVGPKSVETYKARAMEKLGFSSRVELIRFALSMGW 220

Query: 246 V 246
           +
Sbjct: 221 L 221


>gi|119717865|ref|YP_924830.1| two component LuxR family transcriptional regulator [Nocardioides
           sp. JS614]
 gi|119538526|gb|ABL83143.1| two component transcriptional regulator, LuxR family [Nocardioides
           sp. JS614]
          Length = 215

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 63/230 (27%), Gaps = 19/230 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              +     P     L  ++  +  +             GA    LV         LD  
Sbjct: 2   ITVAIADDQPLVRSGLRMILEGEPDIEIVGEA-----ADGADAVALVTAGAPDVLLLDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +  +  SE             L    F                +       
Sbjct: 57  MPEVDGLAAMTEIEASESS--------TRVLMLTTFDLDEYVYQAMRAGAAGFLLKDMAG 108

Query: 138 ARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             I   +  +      ++       +  +  Y     +          +LT RE + L  
Sbjct: 109 EDIVAAVRQVAHGADALLAPAVTRRL--VDRYTRERRRPPAPALD---QLTPREHDVLRL 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G ++ EIA  L I   TV  ++A ++ K   + R  A+  A  + ++
Sbjct: 164 IAAGLSNAEIAAELFIGETTVKTHVARVLMKLRLRDRVQAVVLAYESGLM 213


>gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 228

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 25/231 (10%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +D      +  L    + L+ +   D   +    +   T                    
Sbjct: 12  DDDPLARKIICELLNAQNELSVVSSYDDGQALIDDLDRDT------------APQTDVYL 59

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D  +      D  + +          ++          +      I       N Y   
Sbjct: 60  CDIAMPQLDGIDTTKAIRERG--DTTPIML------LTSYDVEERFIQGMQAGANGYLIK 111

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T D+++IR  ++ +     +   D        +                 + LT RE   
Sbjct: 112 TSDISQIRAAILSIASGTAVFSPDAAG----FSRAVVANEAPGQTPAD-LYGLTEREEAI 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT +  G+++ EIA  LGIS  TV  +I SIM+K   ++R   +  A  + 
Sbjct: 167 LTQLCRGQSNYEIARFLGISEGTVKVHITSIMKKANVRSRLELVVQAFNSG 217


>gi|27380392|ref|NP_771921.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27353556|dbj|BAC50546.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 220

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 68/229 (29%), Gaps = 18/229 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            ++  + +    D           +     +  + E   GA  + L +        +D  
Sbjct: 1   MSAGDATILLVDDHSVVREGYRSVLQKQPGLRVVAEAADGAEAYRLFKSVAPDLVIMDLS 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + VR +   +        +    L   +       +         Y + T   
Sbjct: 61  MPGIGGIEAVRRIRQWD--------KGARILVFTMHQNAGFAVQAIRAGARGYVTKTSPP 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +M +      I  D   E+ L                     LT RE E L  +
Sbjct: 113 ETLVRAVMDVLAGRIAISPDIDHELAL---------SRISGESSAADVLTPREFEVLRLL 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              ++++EIA  L +S  TV N  + I  K    +    +  A+R  ++
Sbjct: 164 LAEESTEEIAETLHVSPKTVANLHSLIKDKLGVDSDIELVRLALRQGLL 212


>gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  ++    + +  +      L  +                    GA    +    
Sbjct: 11  VRVVLADDERMVRTALRVILEAEPDLTVVGEAST---------------GAEAVSVTAEA 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +            + P  L    F              
Sbjct: 56  GPDVVLMDVRMPELNGIRATERIVAGPG-------RPPKVLVVTTFENDAYVYDALRAGA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + L+     ++    +  +        +  +          +LT
Sbjct: 109 AGFLLKRVAADELIQAVRLMARSDSLLFPAAVRSLA-----AEHGARRTAPVPPWARKLT 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G T+ EIA  +G+   TV +++A+++ KT  + R+ A+  A  +  +
Sbjct: 164 EREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFI 222


>gi|153827535|ref|ZP_01980202.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|149738540|gb|EDM52895.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D          A                
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRA---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +    A  +  +    ++    +   V    P          
Sbjct: 46  ----NHADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 209


>gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1]
          Length = 254

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 16/239 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           + L    ++       + +   +  +    +  G   F LV      + +   ++ +++P
Sbjct: 10  AQLRDFEEVHKACEAAESSAQLSEVIAGAIQQFGFRWFALVDDGDLYKHRSGCMMLTNYP 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-PENIT------------PPAGMDNRY 130
              V  +  +   +   V          +     P+ I                G+   Y
Sbjct: 70  SSWVDEVISARLYRDDPVHAASIRSPTGLCWDRIPDVIAPTRAQLSVLERGRAHGLTTGY 129

Query: 131 CSLTFDVARIRIGLMLLFPKGRIIL---RDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                          +  PK R            +G +A                   LT
Sbjct: 130 TVPFRIPGERGAFFSIARPKDRSFTYSEAISAQLLGGIAFEAGRALVKGRAVKAHGAPLT 189

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+++CL  I+ GKT  E+  ILG+S +T++ Y+ +  R+   KTRS  +  A R+  V
Sbjct: 190 PRQIDCLRLIAAGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGYV 248


>gi|91223978|ref|ZP_01259241.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus
           12G01]
 gi|91190889|gb|EAS77155.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus
           12G01]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 62/235 (26%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +       +                    GA          
Sbjct: 5   KVMLVDDHPLMRRGIHQLLSFEPEFEVIAEASN---------------GADAVAKAHELE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     +           +   V  +  +         +
Sbjct: 50  LDLVLLDLNMKGMSGLDTLQALRADGCE--------ARIVILTVSDSPADIEAIVRSGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   ++            +               LT 
Sbjct: 102 GYLLKDTEPDELVELLKQAHQGDKAYSQE-----------VSKYLSERSEQEDVFDTLTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 RESQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 205

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 33/237 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++   + E     +S   +    +  +           + + L                 
Sbjct: 1   MLFVDDHEMVRIGISSYLSTQPDIEVVGEGKSGKEAIEKAHEL---------------HP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D ++      +  + +     +           L    +    E         + 
Sbjct: 46  DLILMDLLMEDMDGVEATQQIKKDLPNI--------KVLMLTSYIEDNEVYRALDAGVDS 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   T   + I   +        +   + L ++        N        +     LT R
Sbjct: 98  YILKTTSASDIAEAIRKTQHNESVFEAEVLVKM-------RNRMNQRAELYE---MLTDR 147

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I+ G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA +++++
Sbjct: 148 EMEILLLIANGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 204


>gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 62/236 (26%), Gaps = 30/236 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++          +  +  ++     +         +                L   D  
Sbjct: 1   MLVVDSHPIVRDGIEVVLGKAYAGIDVGGAADMAEASD---------------LCGRDRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D ++  D P   +  +                 +      +            + 
Sbjct: 46  DLVLMDVMLPGDDPLPAMGEILR--------AHPGLRFIVFTALGSEARAADAIRFGASG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         I   +  +      I          L   +               ELT R
Sbjct: 98  YLLKWCSPDGIVQAIRRVMAGRVHIDPS-------LDEARVASAAGGRALASPVDELTRR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R   
Sbjct: 151 EKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206


>gi|29654353|ref|NP_820045.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|161830925|ref|YP_001596685.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|29541620|gb|AAO90559.1| response regulator [Coxiella burnetii RSA 493]
 gi|161762792|gb|ABX78434.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D L     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHLLIRQAMRLMLEEIQGVRIVGEAGTGEEGLKLRRDKEPDVIILDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R     +  +    ++                +         + + + D   +   +
Sbjct: 64  ELSR-----KLLRRDATIKILMVTGM---EGDLLPMRLLEVGVRGFITKSSDTTELEQAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++   R I       + L         K+         +L+ RE+E L  +++GK ++
Sbjct: 116 RAVYKGQRYISSAIANRLAL--------SKTTTAATCPFKKLSDREMEVLLLLAKGKKAE 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L I+  TVN++   I  K   K     I  AV+  +V
Sbjct: 168 AIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGLV 209


>gi|15896192|ref|NP_349541.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025991|gb|AAK80881.1|AE007791_1 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510347|gb|ADZ21983.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 215

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 73/242 (30%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  +N+V+  +++     +  +   +D +  +   +  +                     
Sbjct: 1   MDNINVVIADDEKLIRDGLKIILNANDEINVIGVAENGIEAAEICKR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +       D  +         + +     D           L    F           
Sbjct: 48  --EKVDVVLTDIRMPVCDGVKATKIIKNQFSDI--------KVLVLTTFKDDEYIFEAMK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y         I   +  ++    ++  +   ++                   + +
Sbjct: 98  NGANGYILKDTSYEIIIDAVKSVYKGNVVVNPEIASKM----VSGVMKTSPSSNEIKEKY 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R++E +  I  G ++ EIA    ++  TV N+I  I+ K   + R+    +A++N 
Sbjct: 154 KLTDRQIEIIIAIGSGLSNKEIAEKQYVTEGTVKNHITEILSKLEMRDRTQIAIFALKNE 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 60/233 (25%), Gaps = 27/233 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I L  +D+     +      +  +              R+  L              
Sbjct: 2   PIRIALVEDDQPVALALQQYFALAPAITCEAVFPNAEEALRRIPKLA------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   +D  +      + V  +           +         ++   P         
Sbjct: 49  --PELLLVDINLPKMNGIEFVGQIVQ-----RCPGILCLM---LTMYEETPLIFDALKAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         I   +      G  +       +                       L
Sbjct: 99  ACGYLLKETPPHEIVAAIEEAKAGGSPMTPLIARRV----VSFFQKQPVPPPAAQSGEGL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE E L  +++G    EI  I+GIS +TVN++   I  K   ++R  A+A 
Sbjct: 155 TDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHIYEKLQVRSRGQAVAK 207


>gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 204

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 40/238 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       +  L +  + +  +            +  L               
Sbjct: 2   IRIVIAEDQGMLLGAMKSLLSMEEDMEVVGLAKNGEEAIEMVTEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D    +  SE             +    F              
Sbjct: 47  NPDICIMDIEMPIRTGLDAAEELRGSE----------CKIIILTTFARPGYFERARKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   + ++    RI   +       L  +              +  LT
Sbjct: 97  RGYLLKDSPIEELVNSIRIIMDGRRIYAPE-------LVDFVYE--------DDSENPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  ++EGKT+ EIA  L +S  TV NYI+ I+ K     R  AIA       
Sbjct: 142 ERESQVLELVAEGKTTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIARFKEKGW 199


>gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
 gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2]
          Length = 199

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 42/238 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       +  L    D +  +            +  L               
Sbjct: 2   IKIVIAEDQRMVLGALGSLLNLEDDMEVIGKASNGKEAISLVQTL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 +    F              
Sbjct: 47  KPDVCIMDIEMPEKSGLEAAEELKGIG----------CKVIILTTFARSGYFQRALKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +    RI   + +                 D  +G++  LT
Sbjct: 97  RGYLLKDSPSEELASSIRNVVEGKRIYAPELM-----------------DDVYGEENPLT 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  I++GK + EIA  L I   TV NYI++I+ K     R  AI  +     
Sbjct: 140 DREKEVLELIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNRIEAITQSKEKGW 197


>gi|299137741|ref|ZP_07030922.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600382|gb|EFI56539.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 212

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 70/243 (28%), Gaps = 38/243 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E++++ +++  +       V+ + +    L  +                          L
Sbjct: 6   ELKKIRVLIVDDHPIMRVGVAAILSAQPDLQVVAQAGTAAEAVR---------------L 50

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +      +D  +      + +R +          +  +   +    +    +     
Sbjct: 51  FAAERPDLTLMDLRLPDKSGVEAIRAIRA--------ISPKARIVALTTYEGDEDIHQAL 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   L  +    R + +     +                     
Sbjct: 103 EAGAQGYLIKGMPHDALVKALYRVHAGHRFLPQVVSQAL---------------SSRVPG 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  +  GK++ EIA  L I   TV ++++ I+ +     R+ A+   ++ 
Sbjct: 148 SHLSQREQEVLQLLFAGKSNREIAEELAIKEATVKSHVSVILMRLNVSDRTQAVVEGLKR 207

Query: 244 NIV 246
            +V
Sbjct: 208 GLV 210


>gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 221

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  +       +    T    +A +       S    + +L               
Sbjct: 2   ISVVIVDDHGMVREGLRQFLTEDPEIAVVGEASDGASGVQLVQSL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                +   ++       L    A +              +           I       
Sbjct: 47  -----RPAVVLMDVMMPVLDGISATASLRHCCP---ESRVIILSNHVERSTVIHAVKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +                  + +  +  +  ++       LT
Sbjct: 99  VGYLLKDALAEELCHAIKEVVQGNVHFAPQA-------SIFLLHEVREPNLPEN----LT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +++G+++ +IA  L I  +TV  ++  I+ K   ++R+ A  YA R N+V
Sbjct: 148 EREADVLRLLAQGRSNKDIARHLHIVEDTVKTHVRHILSKLGVQSRTQAALYATRLNLV 206


>gi|290956391|ref|YP_003487573.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645917|emb|CBG69008.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 218

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 58/220 (26%), Gaps = 11/220 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D +     +   +     +  + E   GA    L R  L     LD  +       
Sbjct: 2   LLADDEVLIRAGIRFVLEVADDIEIVAEADNGADAVELARRHLVDVALLDIRMPGVDGLA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +          V  R + +    F                +         +   + 
Sbjct: 62  AAAEIGT--------VAPRTSVVMLTTFGEEEYVTRALRCGAAGFLLKDTPPDDLIRAVR 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +      ++         L+    +      D    +   LT RE + L  + EG ++ E
Sbjct: 114 MAAAGEPVLSPGVTR--QLIERCVSRDQSQADEARRRVTALTDRERDVLLLLREGSSNAE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I   L IS  T   +++ I+       R  A   A    I
Sbjct: 172 IGKALLISEGTAKTHVSRILSALGCTNRVQAAILAHDAGI 211


>gi|254476945|ref|ZP_05090331.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
 gi|214031188|gb|EEB72023.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 68/232 (29%), Gaps = 26/232 (11%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R   V   P  ++ +  ++     +             G       R        +
Sbjct: 2   PDTIRVLIVDDHPMVAEGIQSILESYDDIEVVG-----IPSNGEEAVAQARALNPDVILM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +           +             +   L   +  +     +  +     Y    
Sbjct: 57  DLNMPKLGGLSATEIILEEA--------PKTRILILSMHDSPEYISSALSHGAMGYVLKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                IR  +  +      +               A        +  ++  LTGRE   L
Sbjct: 109 VPTEEIRQAIDAVMSGETYL------------CTGAEGSLKPKDNPDREA-LTGREQTIL 155

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++GK++ ++A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 156 LELAQGKSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 212

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 65/219 (29%), Gaps = 22/219 (10%)

Query: 39  LDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            D        + AL E             G     L +        LD  +      +  
Sbjct: 3   ADDHEVVRRGVRALVESHPGWTVCGEASNGREAVRLAQELRPDVVVLDVTMPELNGLEAT 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +  S        +     +   V  +              Y         +   +  L
Sbjct: 63  REIRAS--------VPDTEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLVDAIDAL 114

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                 +        G      A    +     G+   LT RE E L  +++G ++ E+A
Sbjct: 115 SKHAPYVPSRAAERPG---NAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV  + A++MRK    +    + YA+RN IV
Sbjct: 172 GQLSISAKTVETHRANVMRKLGASSIVDLVHYAIRNGIV 210


>gi|300949995|ref|ZP_07163946.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955336|ref|ZP_07167717.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|331644390|ref|ZP_08345519.1| transcriptional regulatory protein UhpA [Escherichia coli H736]
 gi|300317756|gb|EFJ67540.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300450640|gb|EFK14260.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|331036684|gb|EGI08910.1| transcriptional regulatory protein UhpA [Escherichia coli H736]
          Length = 217

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 64/228 (28%), Gaps = 34/228 (14%)

Query: 14  REDEQR--TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           R+D+     + +          A+++ L+  +       +     G      +     Q 
Sbjct: 17  RQDKTMITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQV 71

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +      +L+  +            +    +   V  +              + 
Sbjct: 72  CICDISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFL 120

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S       +   +  +   G  +  D   ++                  G+   LT RE 
Sbjct: 121 SKRCSPDELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRER 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +    +++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 165 QVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 212


>gi|256422119|ref|YP_003122772.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256037027|gb|ACU60571.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 222

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 17/214 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSS-DWPFD 85
           +  +  ++        M  L         +GA +      +       + ++   + P  
Sbjct: 15  IISVAIVEDNHDIRTAMELLINGSDGYACIGAFNNAETAVEQIPSLLPNVVLMDFNLPGG 74

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +     ++     Y  +         V+    +         + Y       + +   + 
Sbjct: 75  MNGIECIARLKGEYPDMHFMM---LTVYEDDDKIFQALEAGASGYILKKTPPSELLSAIR 131

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L   G  +          +A      F+           LT RE E L  +S+G    E
Sbjct: 132 DLHEGGSPMSS-------QIARRVVAYFQKQAKPNPALEALTSREKEILDQLSKGFLYKE 184

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L IS  TV  ++ +I  K   ++R+ A+  
Sbjct: 185 IASNLFISIETVRRHVHNIYEKLHVRSRTDAVNK 218


>gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 189

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIETLKPDISIMDIEMPIQSGLDVAETLKKDKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  S--------CKVIILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMRGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 231

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 74/249 (29%), Gaps = 28/249 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + +  + E   + V            +  L  +     +   +          +
Sbjct: 5   ETAKIRVAMVDDHEMFRAGV------------IATLRDSFDIVGQAADV-----PGSVAM 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  VS          +A S       V    +    P      +  +  
Sbjct: 48  IAQTKPQVVLLDVHVSGGEGGGGAEILAKSRPYSPTTVFLALSVSDAP-----QDVGSVI 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYD 177
                 Y + T   A +   +  +     +        +         A        +  
Sbjct: 103 RAGAQGYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSTFQGVPAAGSDGGADGAAR 162

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
 gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149]
          Length = 206

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 76/214 (35%), Gaps = 17/214 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK------LDSIVSSDWPFDLVRC 89
           ++ +D  +  +  +  + E  G         D     +       D ++      +L   
Sbjct: 3   IVIIDDDIFVSGALKTILEASGDITVSATGTDGKDAVRLFRTYRPDVLLMDIRMKELSGL 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A +E  K +   +         F      +         Y     D   +   L  +  
Sbjct: 63  DASAEILKEFPDAKILL---LTTFSDDEYIVRALKLGAKGYLLK-QDYESLIPALHAVHS 118

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +   +       + +    + ++      +D++++ RE+E +  I++G ++ EIA  
Sbjct: 119 GQTVFGNE-------IISKIPELLQTGPTFHLEDYDISERELEIIRLIADGLSNKEIASR 171

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S  TV NY++SI+ K   + R+    +  R+
Sbjct: 172 LFLSEGTVRNYLSSILDKLDLRDRTQVAVFYYRH 205


>gi|15601642|ref|NP_233273.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121726448|ref|ZP_01679712.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147671672|ref|YP_001215191.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153802474|ref|ZP_01957060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153819712|ref|ZP_01972379.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153822367|ref|ZP_01975034.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|227812454|ref|YP_002812464.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|229510178|ref|ZP_04399658.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229517693|ref|ZP_04407138.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|254850052|ref|ZP_05239402.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|298499668|ref|ZP_07009474.1| LuxR family transcriptional regulatory, chaperone HchA-associated
           [Vibrio cholerae MAK 757]
 gi|9658321|gb|AAF96785.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121631043|gb|EAX63420.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124121993|gb|EAY40736.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|126509730|gb|EAZ72324.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126520130|gb|EAZ77353.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146314055|gb|ABQ18595.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227011596|gb|ACP07807.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227015536|gb|ACP11745.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229345729|gb|EEO10702.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229352623|gb|EEO17563.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|254845757|gb|EET24171.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297541649|gb|EFH77700.1| LuxR family transcriptional regulatory, chaperone HchA-associated
           [Vibrio cholerae MAK 757]
          Length = 253

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90
           L++++       +    +     + G    +        +  ++ I       FD    +
Sbjct: 23  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDWFDDGENI 82

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIR 141
             +   KY  + +   E   P F              +  P G   +      F    + 
Sbjct: 83  DAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGLE 142

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISE 199
             + L   K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 143 GAVSL-GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 201

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 202 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 246


>gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
 gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
          Length = 252

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 85/247 (34%), Gaps = 16/247 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL---VRWDLF 69
           +R +E+ ++     P      AR++ +D        + A  E  G               
Sbjct: 8   SRPEEETSA---EEPISPPAPARLLLVDDEPGLRTAVQAYLEDEGFDVTTANDGEEGWTA 64

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
            ++ +  +V SD     +    L ++ +    L     +F        + I       + 
Sbjct: 65  AQELIPDLVISDVMMPRLDGYGLLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQAGVDD 124

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAY------QANMFKSYDVH 179
           Y    FD   +   +  +  +   +L +       +IG +A              S+   
Sbjct: 125 YIPKPFDPDELVARVRNVVRRQERLLAEAARYADADIGQMARQITEIRSLLQQTGSHKSA 184

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                  T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + Y
Sbjct: 185 TPATHSFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFTKTGTTSRTELVRY 244

Query: 240 AVRNNIV 246
           A+ N +V
Sbjct: 245 ALENGLV 251


>gi|158314279|ref|YP_001506787.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109684|gb|ABW11881.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 211

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V + L  + E     +  +   S  +  +       S   R+ A             
Sbjct: 1   MTGVRVFLLDDHEIVRRGIREMLEDSGDIEVVGEASTAASALRRIPAA------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      ++ R +  ++      +L          +           
Sbjct: 49  ---RPDVAVLDARLPDGSGIEVCREIRSAQPAVGCLIL--------TSYDDDDALFAAIM 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +     ++      +            +       +  
Sbjct: 98  AGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQK-------VLARLRDEPAEDEQLA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L  RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  +A R 
Sbjct: 151 ALGSRERQILRLIAEGMTNRQIAGCVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209


>gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 222

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 10/221 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPF 84
            +    ++ +D    W   +    E  G +                  +   ++      
Sbjct: 6   GENPVTVMVVDDHPMWRDGVSRDLEAAGFTVSATAEGVESARRRAAAVQPAVVLMDMNLP 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D     A +   +      +   L         + +       + Y   +  VA +   +
Sbjct: 66  DGNGADATTAVLEVSP---KSKVLVLSASAERDDVLDAVKAGASGYLVKSASVAELLEAV 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
              F    +        +  L  Y+       D    +   LT RE E L  +++G ++ 
Sbjct: 123 RATFDGQAVFTPGLAGLV--LGEYRRMSTAPADDRAPELPRLTDRETEVLRLVAKGLSAK 180

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L +S  TV N++ + +RK     R     YA+   +
Sbjct: 181 QIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|153800849|ref|ZP_01955435.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
 gi|124123559|gb|EAY42302.1| transcriptional regulator UhpA [Vibrio cholerae MZO-3]
          Length = 208

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +  E   A     +         +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKEAFHA-----LTQAEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         ELT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLAELTKREVEVFDLLVKG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|219850206|ref|YP_002464639.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219544465|gb|ACL26203.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 219

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 73/240 (30%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +       +  +  R      +  +                 GA+     + 
Sbjct: 4   PITILIADDHTMFRQGLREILERKGGFQVVAEVRD---------------GAAAVEAAKT 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +  R +          VL         +       +      
Sbjct: 49  TKPDVALLDVSMPVMTGIEAARQIGQVSPHTRCVVL--------TMHRDEQTVLEALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N Y     D + +   + +++              G  AA   ++ +  D        L
Sbjct: 101 ANAYLLKDADASELIEAIHVVYRGEAA-------LAGSAAARVLDLLRRNDNAPALHEVL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +++G  +  IA+ L ++  TV N ++ I +K     R+ A   AV+  +V
Sbjct: 154 TPRERDILALVAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213


>gi|269139390|ref|YP_003296091.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|267985051|gb|ACY84880.1| two-component transcriptional regulator, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304559286|gb|ADM41950.1| BarA-associated response regulator UvrY [Edwardsiella tarda FL6-60]
          Length = 218

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C         +               +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCRS---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V      +   +    P          
Sbjct: 47  CADIVLMDMNMPGIGGLEATRKILR--------VKPEIKVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L         +           L+
Sbjct: 99  FGYLSKGAAPQEMISAIRAVYAGQRYIASDIAQQMAL--------SQLTPQSESPFGSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G    EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 151 ERELQIMLMITKGSKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter
           intermedius]
          Length = 236

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 11/221 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +                   VG  H  +V  +  ++ K + I    +P + V     +  
Sbjct: 15  LENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFIHVG-YPTEWVNFYIENNY 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRYCSLTFDVARIRIGLM 145
                ++++   +  P F    +NI              G+            R+   + 
Sbjct: 74  IVSDPIIKKSRFMSHPYFWHEIKNINKAEKKIIRDVSEFGIKKGLTIPVHTHDRVIYAIC 133

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             F    I     L+   L   +     K  +        LT RE ECLTW ++GK+S E
Sbjct: 134 FAFTDKNIDREIELYLRALSNFFITGYKKLDEPADMSLPILTPREKECLTWTAKGKSSWE 193

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +I+G+S  TVN +I + + K     R   +  A+   ++
Sbjct: 194 TGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234


>gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 267

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 19/227 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVSSDWPFDLVRCMALSE 94
              T S T       ++  A    +V +     Q   S    IVS  +P   V     SE
Sbjct: 33  CRDTKSVTDLWRNALDFFYARKIKMVSYHSDDAQLPGSKPLGIVSDGFPEGWVCEYLESE 92

Query: 95  KDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIR 141
             +   + Q  + L  P   +                     +G+ +      +      
Sbjct: 93  LFRVDPIPQLASILSRPFRWSEAPKLMRLSQEGERYMQTLADSGLGDGVAMQVYGPNMRN 152

Query: 142 IGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISE 199
             + L F +    +  D ++E+   A      +     +  +    L+ REVE L WI+ 
Sbjct: 153 AYVGLGFGEHDPNLTSDEIFELQCAAQIAHIRYCELTEYRQRTADTLSPREVEILQWIAR 212

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK++  IA ILGISR+TV+     I  K     R+ A    + + +V
Sbjct: 213 GKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGLV 259


>gi|149278022|ref|ZP_01884161.1| transcriptional regulator, LuxR family protein [Pedobacter sp.
           BAL39]
 gi|149231220|gb|EDM36600.1| transcriptional regulator, LuxR family protein [Pedobacter sp.
           BAL39]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 20/180 (11%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D      LD  +      D +  +          ++ +   +   V+ T    +   A  
Sbjct: 51  DQPDVILLDIQMPGTNGIDALPVLKK--------MIPQVYIIMLTVYETEKAILDALANG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y +     A++   +  +   G  +  D    + +             +   +D  L
Sbjct: 103 ASGYFTKNTPTAKLIEAIKDVMEGGGPMSPDVARTVIM------------SLQRNQDSPL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  I+ GK   +IA  L I   TV  +  +I  K    T++ AI  A    +V
Sbjct: 151 TKRETQILELITTGKDRGQIAKELFIEVETVKTHTKNIYAKLNVNTKAEAIQVAKDKRLV 210


>gi|115371976|ref|ZP_01459288.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115370941|gb|EAU69864.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 209

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 68/244 (27%), Gaps = 38/244 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + + I +  +       +S L  + + +  +                    G     
Sbjct: 1   MKTEPIRIQVVDDHPLIRDGLSALIRQCEDMRLVAEAAD---------------GKRAVE 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L R        +D  +        +R +                 L   +     +    
Sbjct: 46  LFREHRPDVTLMDLGLPVMDGMSALRAIRRE--------FPDARILVLTLRQGDEDVHQA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         I   +  +    R +  +    +                    
Sbjct: 98  IQAGARGYLLKGATGPEILDAIRAVHRGLRHVAPEAAAMLVERVG--------------- 142

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L  ++ G+++ +IA  L I+  TV  ++  I+ K     R+ A+  A+R
Sbjct: 143 DSPLTERERQTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKLGVDDRTQAVTRALR 202

Query: 243 NNIV 246
             ++
Sbjct: 203 RGLI 206


>gi|255320985|ref|ZP_05362158.1| response regulator UvrY [Acinetobacter radioresistens SK82]
 gi|262379925|ref|ZP_06073080.1| response regulator [Acinetobacter radioresistens SH164]
 gi|255301949|gb|EET81193.1| response regulator UvrY [Acinetobacter radioresistens SK82]
 gi|262298119|gb|EEY86033.1| response regulator [Acinetobacter radioresistens SH164]
          Length = 211

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E   + +  +      +  +   +                G     LVR  
Sbjct: 2   ITILVVDDHELVRTGICRMLEDHADVQVIGQAES---------------GEEAIALVRQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +  +         +             P          
Sbjct: 47  HPNVVLLDVNMPGIGGVETTRRLLQT-----APETKVLAVSGL---AEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPITEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K    +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLDIDSDVKLTHLAIRYGLI 209


>gi|220913455|ref|YP_002488764.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219860333|gb|ACL40675.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 226

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 13/218 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEY----VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R++ +D    +   + A  +     VG +  +     +  E + D ++        +   
Sbjct: 16  RVVIVDDHAIFRSGLKADLDASIHVVGEAATVEQAIAVIAETRPDVVLLDVHLPGGLGGG 75

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                     +L     L   V     + +         Y + T   A I   +  +   
Sbjct: 76  GREVIAGSVPLLGTTRFLALSVSDAAEDVVAVIRAGARGYVTKTISGAEITDAVFRVAGG 135

Query: 151 GRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             +           LA +  + F     D+   +  +L+ RE+E +  I+ G +  E+A 
Sbjct: 136 DAVFSPR-------LAGFVLDAFGTAPADIADDELDKLSARELEVMRLIARGYSYKEVAK 188

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  ++++++RK    +R     +A    ++
Sbjct: 189 ELFISIKTVETHVSAVLRKLQLSSRHELTKWAAERRLL 226


>gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 212

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 75/222 (33%), Gaps = 19/222 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++     + +      +    G      +R         D ++     
Sbjct: 5   KRLLLIDDDPNLILLAKDYLEFRGY-EVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V  +  +    +  V+               + +       + Y    F+   +   
Sbjct: 64  YTFVETIRSNSATDWIPVIFLSARGQ------TADRVRGLTTGADVYMVKPFEPEELVAQ 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +L+              N+     +   ++ ELT  E + + +++ G ++
Sbjct: 118 VESSLKHTERLLQ------------VQNVGIQPVIKLDREIELTPTETKVIQYVARGLSN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA +LG+S+ TV +++++++ KT    R+    +A+ + +
Sbjct: 166 REIAEVLGVSQRTVESHVSNMLGKTGLHNRTELARWAIESGL 207


>gi|107102108|ref|ZP_01366026.1| hypothetical protein PaerPA_01003157 [Pseudomonas aeruginosa PACS2]
          Length = 211

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 30/237 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  + +   + ++ +    + L  +   D                G     L R    
Sbjct: 1   MLVVDDHDLVRTGITRMLADIEGLQVVGQAD---------------CGEDCLKLARELKP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      +  R +  S+ D    V+              P            
Sbjct: 46  DVVLMDVKMPGIGGLEATRKLLRSQPDIKVVVVTVC--------EEDPFPTRLMQAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +    +  +   +  +F   R I      ++ L +         +D        L+ R
Sbjct: 98  YMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDS-------LSER 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++    I+       I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMV 207


>gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 250

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 22/219 (10%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD-----LVRCMALSEKDKYYN 100
              +  L E  G +   L+          + +VSS + F+             +      
Sbjct: 36  VKALQNLLEVDGVALINLILRPDHTITI-ERVVSSGFGFESKSVEWDNIYQKKKFQYIDP 94

Query: 101 VLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           V+                                   G+       +F   +I   L + 
Sbjct: 95  VVSCSASFRRSFNWASVPSMITLSEVQFNFLERAQEMGLKEGASIGSFSTRQIYKELTIT 154

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  ++L  + L+ A  A   K   +   K   LTGRE E L W SEGK+S EI 
Sbjct: 155 SVCGCSLNPEQLASLELINAVSAQAMKRLILPAEK---LTGRESEILAWSSEGKSSWEIG 211

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I  I+  TV  ++ +I +K   + R+ AI  A+R  ++
Sbjct: 212 MICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRLGLI 250


>gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 189

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVVGQAENGEEALKLIEKLQPDISIMDIEMPIQSGLDVAEELQKKKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------LCKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMQGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            + ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 PELMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSSG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AIA A     +
Sbjct: 159 TVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189


>gi|256822170|ref|YP_003146133.1| two component LuxR family transcriptional regulator [Kangiella
           koreensis DSM 16069]
 gi|256795709|gb|ACV26365.1| two component transcriptional regulator, LuxR family [Kangiella
           koreensis DSM 16069]
          Length = 212

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     +  L + +D +  +   +       ++  L               
Sbjct: 2   IKVLLVDDHDLVRMGLGRLLSDADGIEVVGEAESGEEAIKKVKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D+ +      +  R M   E D           +   V  + P      A   
Sbjct: 47  NPHVVMMDANMPGIGGLEATRRMLRFEPD--------LKVIALTVHGSEPYPTQFIAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D+  +   +  +      +  +   ++ L         +           L+
Sbjct: 99  MGYLTKGTDINEMVKAIHSVNRGKLYLAAEVAQQMAL--------SQFSKTEDNPFSTLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+    I+  L +S  TVN+Y   +  K   +        A+R  ++
Sbjct: 151 EREMQIMLMITRGEKVQSISDKLHLSPKTVNSYRYRLFEKLGVENDVSLTHMALRYKVI 209


>gi|326330507|ref|ZP_08196815.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
 gi|325951782|gb|EGD43814.1| two-component system response regulator [Nocardioidaceae bacterium
           Broad-1]
          Length = 226

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 63/239 (26%), Gaps = 21/239 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E   +    L      L+ +            +                  
Sbjct: 7   IRVLLVDDQELVRAGFRMLIDSQPDLSVVGEAGDGQEAVAALT-------------HGGT 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +A  E             +    F              
Sbjct: 54  EADVVLMDVRMPRMDGVEATGLIAGREGAP--------RVIVLTTFDLDEYAFAAIRAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +     ++       +    A  A    +      +   LT
Sbjct: 106 AAFLLKDARPEDLLTAIRTVHAGDSVVAPSTTRRLLEHFAASAPSTSTPAAAEQRLAVLT 165

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +  G ++ EIA    ++  TV  ++  ++ KT ++ R   +  A    +V
Sbjct: 166 EREREVLTLVGRGLSNTEIAETFVVAEATVKTHVGRLLAKTGSRDRVQLVVLAYETGLV 224


>gi|302539653|ref|ZP_07291995.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457271|gb|EFL20364.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 219

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 28/243 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  +  I+L  + +     V  +      LA +              A            
Sbjct: 3   EAAETRILLADDHQLVRRGVRLILDAEPDLAVVAEAGNGAEAVEAARA------------ 50

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                      D  V       +    A  E  +    ++        ++          
Sbjct: 51  --------HHPDLAVLDIAMPRMTGLQAARELSRSQPGIRLLM---LTMYDNEQYFFEAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A   + Y   +     +             +    +    L+  +  +  +  +    + 
Sbjct: 100 AAGASGYVLKSVADRDLVEACRATMRGEPFLYPGAVN--ALIRNHL-DRARHGEPLPERA 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              T RE E L  ++EG TS +IA +L IS  TV  + A++++K   K R     YA+R 
Sbjct: 157 I--TDREEEILKLVAEGHTSQQIADMLVISVKTVERHRANLLQKLGLKDRLELTRYAIRA 214

Query: 244 NIV 246
            ++
Sbjct: 215 GLI 217


>gi|225873102|ref|YP_002754561.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794212|gb|ACO34302.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 237

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +       V ++    + +  +                    G          
Sbjct: 21  IRIVLADDHPVVRIGVRNMLAGEEQVEVVGEAGD---------------GDEAITQTLEL 65

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +      + +R +           ++           +  + I       
Sbjct: 66  LPDILLLDLAMPRLPGLEAMRSI-----MSGSPSVKIILLTSQI---STQQIIEALQIGA 117

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                       +   +  +      I       +  L     ++ +       K + LT
Sbjct: 118 RGIVLKDALADHLTEAIFSVASGDYWIGG---KRVVNLVGALHDLMQKAATPERKTYGLT 174

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I EG ++ +IA    +S  TV  ++++I  KT   TR     +A+ +++V
Sbjct: 175 PREMEVVGCIVEGCSNRDIAKQFTLSEETVKRHLSNIFDKTGVSTRLELAMFAIAHHLV 233


>gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 213

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 72/231 (31%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  + E     +     + + ++ +   +     +  +  + E              F
Sbjct: 4   VLIVDDHEMIRLGLKEHLLKGEKISHVSDAEN---ISEALKQVQEQY------------F 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  + S+      + +     D           +    F      I       + 
Sbjct: 49  HVIIMDVRLKSESGVQGCQEVLEYSPD--------SKVIMLTAFDDDDALIESILAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTG 188
           Y      +  +   ++      +I+                   ++ +         LT 
Sbjct: 101 YLMKEVRIKSLVESVIKAAEGEQIMDAKTT-------EKVLEYMRNKNPNRENPTDILTN 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE++ L  +++GKT+ EI   L +S  TV N ++ I+ K     R+ A AY
Sbjct: 154 REMDILDLVAKGKTNSEIGEELHLSEKTVRNQLSRILNKLDLNNRTQAAAY 204


>gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241]
 gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241]
          Length = 189

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIATLKPDISIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  S--------CKVIILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMRGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|158313275|ref|YP_001505783.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158108680|gb|ABW10877.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 218

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +S L    D L  +                    G     L   +
Sbjct: 8   IRVLLADDHRLVLDGLSALIDSVDGLTVVGEATS---------------GEQAVDLAGTE 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  ++       +         ++              
Sbjct: 53  HPDVVLMDIEMPGIGGVEATRRITTAQ-----PTIAVVM---LTMYGEDEFVFAALRAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     +   D        A      F S         ELT
Sbjct: 105 RGYLLKGAQQKDVVRTIGAVARGDAVFGPDV-------AHRVLRTFTSPPAENAPFPELT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L+ ++ G  +  IA  L ++  TV N +++I+ K     R+ AI  A R  +
Sbjct: 158 EREREVLSLLANGWPNSRIARHLQLTPKTVANNVSNILAKLHAPDRTAAILRARRAGL 215


>gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
 gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271]
          Length = 207

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 19/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +       + L  +I    +              G      +         +D  +    
Sbjct: 1   MDDHFVVREGLKLIIETSDSFQIIGEA-----ANGEEALSFIEKKKPDVILMDLNMPKMS 55

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + +  +   +             +    ++     +         Y     D   +  
Sbjct: 56  GLETIEALNKKQS--------HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFR 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L        ++  + + +I           K       ++  LT +E+  L  I+ G  
Sbjct: 108 TLEAAIRGEILLQPNIMEKI------VNYKRKEVYADKVEENNLTEKELFVLKAIARGNK 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 162 NKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205


>gi|223934694|ref|ZP_03626614.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896649|gb|EEF63090.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 229

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 62/236 (26%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I+L  +       +  +      LA     +                      LV+ +
Sbjct: 13  TKILLVDDHPMMREGLRQIIGNEIDLAVCGEAENA---------------FQALELVKSE 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L++ +             +   L   +               
Sbjct: 58  KPDLVLADITLPDKNGLELLKDLQAQH--------PKLPVLVISMHDEALYAERVLRAGG 109

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFEL 186
             Y        +I   +  +      +        + L + +                 L
Sbjct: 110 RGYIMKHEGGKKIMQAIRHVLSGQIFVSEKMSARILELFSGH------GTQAASSPIENL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T RE E    I EG ++ EIA  + +S  TV  +  +I  K   KT +  I Y VR
Sbjct: 164 TDREFEVFRLIGEGLSTKEIAANMHVSAKTVEVHRMNIKTKLGLKTAAELIRYTVR 219


>gi|188590891|ref|YP_001795491.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170937785|emb|CAP62769.1| RESPONSE REGULATOR, LuxR family [Cupriavidus taiwanensis LMG 19424]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +    +    +              ++                  
Sbjct: 2   IRVLIADDHEIVRAGLRQFISEEPDIQVTGEAGSGDEVMAQLR---------------DG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D+++ +   +       L        P        I       
Sbjct: 47  EFDVLVLDISMPDRNGIDVLKLIRQRK-----PDLPVLILSTYP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +                       L+
Sbjct: 99  SGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGGLDKPTEQPVHQM--------LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +S G++   IA  L +S  TV+ Y + I+ K   KT +    YA++N +V
Sbjct: 151 EREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209


>gi|3822034|gb|AAC82663.1| GacA-like protein [Vibrio cholerae O395]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D                           
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRT---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +    A  +  +    ++    +   V    P          
Sbjct: 46  ----NHADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S NTVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLSLSPNTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 209


>gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 68/222 (30%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     L   +     ++   E   G     L     F    LD  +      
Sbjct: 4   VLLAEDQVMVRQGLKVMIETDEDIFVTGEATNGKEAIRLCESQRFDVAVLDIRMPEMDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +       + Y     D   +   +
Sbjct: 64  EAAKVLRSR--------FPEMKILMLTTFDDHQYVMEALKLGVSGYMLKDGDTESLIRSI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                 G  +           AA    +   ++     D  LT RE+  L  I EG  + 
Sbjct: 116 KSALNGGLSLEDQV-------AAKVMPVLLQHEEAIPIDPTLTPREIAILKCIGEGLNNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  LG+S  TV N  + I+ K A + R+    YA+R+ +V
Sbjct: 169 EVAERLGLSVGTVKNQTSQILDKLALRDRTQLAIYAIRHRLV 210


>gi|191165770|ref|ZP_03027608.1| transcriptional regulatory protein UhpA [Escherichia coli B7A]
 gi|193069199|ref|ZP_03050156.1| transcriptional regulatory protein UhpA [Escherichia coli E110019]
 gi|194428140|ref|ZP_03060684.1| transcriptional regulatory protein UhpA [Escherichia coli B171]
 gi|256021313|ref|ZP_05435178.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9]
 gi|300815087|ref|ZP_07095312.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300822443|ref|ZP_07102583.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300903057|ref|ZP_07120998.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300917507|ref|ZP_07134166.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300925486|ref|ZP_07141364.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300932293|ref|ZP_07147564.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|301306297|ref|ZP_07212369.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301325360|ref|ZP_07218863.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|309795786|ref|ZP_07690201.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331679764|ref|ZP_08380434.1| transcriptional regulatory protein UhpA [Escherichia coli H591]
 gi|332282546|ref|ZP_08394959.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9]
 gi|190904094|gb|EDV63805.1| transcriptional regulatory protein UhpA [Escherichia coli B7A]
 gi|192957523|gb|EDV87969.1| transcriptional regulatory protein UhpA [Escherichia coli E110019]
 gi|194413898|gb|EDX30176.1| transcriptional regulatory protein UhpA [Escherichia coli B171]
 gi|300404911|gb|EFJ88449.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300415265|gb|EFJ98575.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300418414|gb|EFK01725.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300459955|gb|EFK23448.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300525090|gb|EFK46159.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300531979|gb|EFK53041.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300838479|gb|EFK66239.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300847798|gb|EFK75558.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|308120665|gb|EFO57927.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|324019711|gb|EGB88930.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331072936|gb|EGI44261.1| transcriptional regulatory protein UhpA [Escherichia coli H591]
 gi|332104898|gb|EGJ08244.1| DNA-binding transcriptional activator UhpA [Shigella sp. D9]
          Length = 217

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 64/228 (28%), Gaps = 34/228 (14%)

Query: 14  REDEQR--TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           R+D+     + +          A+++ L+  +       +     G      +     Q 
Sbjct: 17  RQDKTMITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQV 71

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +      +L+  +            +    +   V  +              + 
Sbjct: 72  CICDISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFL 120

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S       +   +  +   G  +  D   ++                  G+   LT RE 
Sbjct: 121 SKRCSPDELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRER 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +    +++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 165 QVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 212


>gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 15/225 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V         LA ++     +          E +      +++        LD  +   
Sbjct: 6   IVDDHIVLRSGLAMLLGAQDDMEIVAEAATAAEAM-----EILKSSKPDVIILDINLPDK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L   +                 LF  +                 Y         + 
Sbjct: 61  NGMELAEDILRKHG--------LVKILFLTMHDEPEYVGRVLHIGAAGYILKNAADTELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++ R  +  I    + + +              L+ RE E L  I+ G 
Sbjct: 113 NAIRAVKRGEFVLQRGLMENIARQKSRKLSG--HTIEAAPPKASLSKRETEVLQLIALGY 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E+A  LGIS  T+  + A+IM    TK RS  + YA+ + ++
Sbjct: 171 TQQEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHGLI 215


>gi|259419008|ref|ZP_05742925.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
 gi|259345230|gb|EEW57084.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 26/230 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P  ++ +  ++     +     +       G                +D 
Sbjct: 4   PTRVLIVDDHPMVAEGIQSILESYSDIEVIGAVSG-----GREAIAQTEACAPDVILMDL 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +                 L   +  +     T  +     Y      
Sbjct: 59  NMPDVGGLSATEIILERR--------PETRVLILSMHDSPEYISTALSHGAVGYVLKDVQ 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I+  +  +    + +       +                       LTGRE   L  
Sbjct: 111 PEEIKTAIDAVMRGTQYLCTGAAGSL-------------SPQSHTSREALTGREQTILLE 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 158 LAQGKSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|255525483|ref|ZP_05392420.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296188583|ref|ZP_06856971.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510848|gb|EET87151.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296046847|gb|EFG86293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 62/235 (26%), Gaps = 26/235 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +       +  +    +    +  +                         
Sbjct: 1   MSNIKILIADDQTLMRDGLKTILELEENFTVVGAVKNGSEVLEFCKQ------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D I+      ++            Y  +          F+     I    
Sbjct: 48  -------NVPDLILMDIRMPEMDGVKCTKMLKALYPQIIIL---ILTTFNDGDYIIEALN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   +   +    ++      ++    +       +         
Sbjct: 98  YGASGYILKDIEGDELIKAINDAYKGSMMLPSTVAKKLVQSLSSNPKFKPNEKKVIN--- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EL+ RE E    +S G  + +IA  L IS  TV NYI++I  K  T  R+ A   
Sbjct: 155 ELSERETEIAKMLSMGFNNKQIASSLFISEGTVKNYISNIYSKLGTSDRTSAAIM 209


>gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
 gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC
           29909]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 28/200 (14%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITP 122
           D  + + +P +               V+      F P                    ++ 
Sbjct: 10  DIFIVTSYPNEWADIYTTHNYQLIDPVVLTAFRRFSPFSWDENITVLSELKLSKIFALSK 69

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-----EIGLLAAYQANMFKSY- 176
              + N +  +  D       L L+         +         + ++         +  
Sbjct: 70  KYNIVNGFTFVLHDTMNNLAMLSLIMDDDVQKEVEGRVVNDRDRLQMVLIETHEKMLTLS 129

Query: 177 ----------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                              L+ RE E L W S GKT  EIA+I GI+  TV  +I ++++
Sbjct: 130 QNKINVLGLKGTGISSKTLLSPRENEVLHWASMGKTYQEIALITGITSRTVKYHIGNVVK 189

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K        AI   V   ++
Sbjct: 190 KLGVINAKQAIRLGVELELI 209


>gi|295704765|ref|YP_003597840.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802424|gb|ADF39490.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 212

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +I  D        M  +               G       +        LD  +      
Sbjct: 5   IIIADDNSFIREGMKIILNTYEEFNVVATLKDGQEAVQYCKNHSVDIALLDVRMPVMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + ++ S          +   L    F      I         Y     +  RIR  +
Sbjct: 65  EATKLISDST---------KAKPLILTTFDDDEYIIDAVKNGAKGYLLKNTEPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F    ++    L +I              D+      + T RE   +T I++G ++ 
Sbjct: 116 KSVFNGHTVLQDVVLDKIKSSLNAAVERESKADM-----TQFTERETSIMTLIAKGLSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  TV NYI+SI+ KT  + R+    Y
Sbjct: 171 EISKTLFISEGTVANYISSILSKTGLEHRTQIAIY 205


>gi|237732242|ref|ZP_04562723.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
 gi|226907781|gb|EEH93699.1| transcriptional regulator NarP [Citrobacter sp. 30_2]
          Length = 225

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 66/236 (27%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +S L         +                    GAS   L
Sbjct: 13  EVTPFRVLIVDDHPLMRRGISQLLQLDPAFDVVAEAGD---------------GASAIDL 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V     +     
Sbjct: 58  ANRLDLDVILLDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDAASDVYALI 109

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G+             + Y       +       
Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRNGAKGGKAFSARV-------SEYLRERDL-FGAQEDPF 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 162 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 217


>gi|15641226|ref|NP_230858.1| response regulator [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121729873|ref|ZP_01682301.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|153803512|ref|ZP_01958098.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153824227|ref|ZP_01976894.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153831196|ref|ZP_01983863.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|229505194|ref|ZP_04394704.1| BarA-associated response regulator UvrY [Vibrio cholerae BX 330286]
 gi|229511136|ref|ZP_04400615.1| BarA-associated response regulator UvrY [Vibrio cholerae B33]
 gi|229515595|ref|ZP_04405054.1| BarA-associated response regulator UvrY [Vibrio cholerae TMA 21]
 gi|229518255|ref|ZP_04407699.1| BarA-associated response regulator UvrY [Vibrio cholerae RC9]
 gi|229521333|ref|ZP_04410752.1| BarA-associated response regulator UvrY [Vibrio cholerae TM
           11079-80]
 gi|229529699|ref|ZP_04419089.1| BarA-associated response regulator UvrY [Vibrio cholerae 12129(1)]
 gi|229608213|ref|YP_002878861.1| response regulator [Vibrio cholerae MJ-1236]
 gi|254292120|ref|ZP_04962893.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|9655693|gb|AAF94372.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121628382|gb|EAX60882.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124120948|gb|EAY39691.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|126518250|gb|EAZ75475.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|148873319|gb|EDL71454.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|150421955|gb|EDN13929.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227013130|gb|ACP09340.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|229333473|gb|EEN98959.1| BarA-associated response regulator UvrY [Vibrio cholerae 12129(1)]
 gi|229341431|gb|EEO06434.1| BarA-associated response regulator UvrY [Vibrio cholerae TM
           11079-80]
 gi|229344970|gb|EEO09944.1| BarA-associated response regulator UvrY [Vibrio cholerae RC9]
 gi|229347364|gb|EEO12324.1| BarA-associated response regulator UvrY [Vibrio cholerae TMA 21]
 gi|229351101|gb|EEO16042.1| BarA-associated response regulator UvrY [Vibrio cholerae B33]
 gi|229357417|gb|EEO22334.1| BarA-associated response regulator UvrY [Vibrio cholerae BX 330286]
 gi|229370868|gb|ACQ61291.1| BarA-associated response regulator UvrY [Vibrio cholerae MJ-1236]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D                           
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRT---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +    A  +  +    ++    +   V    P          
Sbjct: 46  ----NHADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 209


>gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 231

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 78/248 (31%), Gaps = 31/248 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              ++L  ++      V       D        +   +W                 L+  
Sbjct: 4   PAKVLLVDDEPGVRESVQAYLQYGDDFEVRTASNANEAW----------------DLLNQ 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           ++ +    D ++     +  ++ +    + +   V+      F        + I      
Sbjct: 48  EIPELVISDIMMPQVDGYQFLKKLREDARFQTIPVV------FLTARGMTSDRIQGYNAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLL--FPKGRIILRDRLWEIGLLAAYQANMFKSYD------- 177
            + Y S  FD   +   +  L    +  +        +  +A     + +          
Sbjct: 102 CDAYLSKPFDPEELEALIKSLIERRRQSLQATSENARLEEIARDIRELKQQVGQQNTFTT 161

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 162 TPPPIKIDLTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELV 221

Query: 238 AYAVRNNI 245
            +A+++ +
Sbjct: 222 RFALKHGL 229


>gi|16763929|ref|NP_459544.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56414302|ref|YP_151377.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161615245|ref|YP_001589210.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167550921|ref|ZP_02344677.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167990544|ref|ZP_02571644.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168818830|ref|ZP_02830830.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|197251803|ref|YP_002145532.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263357|ref|ZP_03163431.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197363222|ref|YP_002142859.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198246048|ref|YP_002214503.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200391104|ref|ZP_03217715.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205351850|ref|YP_002225651.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856027|ref|YP_002242678.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|120173|sp|P26319|FIMZ_SALTY RecName: Full=Fimbriae Z protein
 gi|153968|gb|AAA27065.1| fimbriae Z [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|349137|gb|AAA75422.1| FimZ [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419060|gb|AAL19503.1| fimbrial protein Z [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56128559|gb|AAV78065.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161364609|gb|ABX68377.1| hypothetical protein SPAB_03014 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197094699|emb|CAR60229.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197215506|gb|ACH52903.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241612|gb|EDY24232.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197940564|gb|ACH77897.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603549|gb|EDZ02095.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205271631|emb|CAR36457.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324155|gb|EDZ11994.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330873|gb|EDZ17637.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205344205|gb|EDZ30969.1| fimbriae Z protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206707830|emb|CAR32115.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245828|emb|CBG23626.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267992273|gb|ACY87158.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157157|emb|CBW16641.1| probable transcriptional regulator (FimXZ protein) [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911582|dbj|BAJ35556.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084822|emb|CBY94612.1| Transcriptional regulatory protein degU Protease production
           enhancer protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226131|gb|EFX51182.1| Transcriptional regulator of fimbriae expression FimZ LuxR/UhpA
           family [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|332987498|gb|AEF06481.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 49  ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I        +  ++       D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFI--------SNTRTPKGGHH-DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|300705575|ref|YP_003747178.1| response regulator, luxr family [Ralstonia solanacearum CFBP2957]
 gi|299073239|emb|CBJ44598.1| putative response regulator, LuxR family [Ralstonia solanacearum
           CFBP2957]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 59/244 (24%), Gaps = 37/244 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN     V ++L  +       V            +              AL+       
Sbjct: 1   MNM---PVKLLLVDDHPLVRDGVRVRLEAVPHFQVVGEAGDADGALQAARALS------- 50

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +       L                     L   +   L    
Sbjct: 51  --------PDLALMDIGMRGMNGIALTEKFGEQ--------FPEIAVLVLSMHDNLEYVR 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y       + +   +  +                      A       V  
Sbjct: 95  QVMRAGARGYVLKDAPASELVEAIDAVLAGRPFYS-----------TQLAMRMAEQAVAP 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  I++G ++  IA  LG+S  TV ++  ++ RK   + ++  + +A
Sbjct: 144 TPVEALTPREHDILDGIAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFA 203

Query: 241 VRNN 244
           V   
Sbjct: 204 VEAG 207


>gi|296394763|ref|YP_003659647.1| LuxR family two component transcriptional regulator [Segniliparus
           rotundus DSM 44985]
 gi|296181910|gb|ADG98816.1| two component transcriptional regulator, LuxR family [Segniliparus
           rotundus DSM 44985]
          Length = 217

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 68/232 (29%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     V+ L   ++ L  +           R+ AL               
Sbjct: 2   ITVFLVDDHEMIRRGVADLLEETEGLTVIGQASTVAEALTRIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +  +        L           H + + +       
Sbjct: 47  RPDVAVLDVRLPDGNGVELCRGLRSTL-----PELHCLMFTSFTDEHAMLDAVM---AGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +        N  ++          LT
Sbjct: 99  SGYAIKDIKGMELVSAVRSVGAGRSLLDSRVTTAL-------VNRLRAAADKHSPLVRLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  I EG T+ +IA  + ++  T+ NY++ ++ K     R+ A   
Sbjct: 152 EQERVLLDLIGEGLTNRQIAQRMFLAEKTIKNYVSRLLTKLGLDRRTQAAVL 203


>gi|52081142|ref|YP_079933.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52786522|ref|YP_092351.1| hypothetical protein BLi02787 [Bacillus licheniformis ATCC 14580]
 gi|52004353|gb|AAU24295.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52349024|gb|AAU41658.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 22/223 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLV--------RWDLFQEQKLDSIVSSDWPF 84
           + R++ +D  +     +  L E  G S   +               + K D ++      
Sbjct: 1   MIRVLLVDDHMMIRKGIRVLLE--GFSGIEIAGESNNGNEAVLSAGQLKPDVVLMDLSMP 58

Query: 85  DLVRCM-ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + +    A SE  K    ++        +               + Y         +   
Sbjct: 59  NGLDGFTASSEIRKLNPSVKIV---ILTMHDEEIFVQKAIEAGAHGYVLKNSHYRLLYQA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ ++            +I  +  +  +  K           LT RE E L +I  G  +
Sbjct: 116 IVEVYRSNLFYKTSVSQDI--IDQWLNSEPKKPTSV------LTVREKEILRFIVLGYAN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV N+  ++M+K    ++   I YA++N  +
Sbjct: 168 KEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKNKYL 210


>gi|311899311|dbj|BAJ31719.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 219

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +      L  +                    G       R  
Sbjct: 3   IRVLLADDQEMVRRGMRRILETQPDLEVVGEAAD---------------GVGAVEAARLL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++VR +A                +    F              
Sbjct: 48  RPDVALVDVRMPRMDGLEVVRRLAGPG------AAAPTRVVVVTTFDLDEYVYPALRHGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   +        +I       +     +            G    LT
Sbjct: 102 SGFLLKRSGPALLVEAVRAAHAGDSLISPSVTVRL---LRHVTGR-APAASGPGLLEPLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    ++EG+T+ +IA  L IS  TV  ++ASI RK   + R G    A     
Sbjct: 158 RREREVAGKVAEGRTNADIAGELFISAGTVKTHVASIQRKLGVRNRVGIAMRAFELGY 215


>gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR]
 gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR]
          Length = 232

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 6/139 (4%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +     +     I       + Y +       +   L  +   G +I    + ++   
Sbjct: 78  RVIILGSSYNAKRIIELMPLKADGYLTTDSPQDELFAILEKVESGGPVIADSLIPDM--- 134

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                 +  S  V   K+  LT RE E L  +++G T+ +IA  L IS NTV N++ +I+
Sbjct: 135 ---MNRLSASLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVKNHVHNIL 191

Query: 226 RKTATKTRSGAIAYAVRNN 244
            K     R+  ++YA+   
Sbjct: 192 EKLGVSNRAKLVSYAMSRG 210


>gi|254227764|ref|ZP_04921195.1| HTH DNA binding domain family [Vibrio sp. Ex25]
 gi|262395807|ref|YP_003287660.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25]
 gi|151939806|gb|EDN58633.1| HTH DNA binding domain family [Vibrio sp. Ex25]
 gi|262339401|gb|ACY53195.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 62/235 (26%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +       +                    GA          
Sbjct: 5   KVMLVDDHPLMRRGIHQLLSFEPEFEVVAEASN---------------GADAVAKAHELE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     +           +   V  +  +         +
Sbjct: 50  LDLVLLDLNMKGMSGLDTLQALRADGCE--------ARIVILTVSDSPADIEAIVRSGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   ++            +               LT 
Sbjct: 102 GYLLKDTEPDELVELLKQAHQGDKAYSQE-----------VSKYLSERSGQEDVFDTLTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 RETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402]
          Length = 201

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 64/214 (29%), Gaps = 29/214 (13%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGAS----------HFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +I +D        +  + +  G               L          +D  + +    +
Sbjct: 3   IIIVDDDCLVVSSLKTILKANGFDIIATGSNGNEAITLFNEYKPDILLMDIRMQNMTGIE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +     D           L    F+               Y     ++  +   L 
Sbjct: 63  ASEKILAEHSD--------AKILLLTTFNDEEYITKAINFGCKGYILK-QNIDSLVPALN 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     +   + + +I           ++         +L  RE + L  +++G  + E
Sbjct: 114 AVGAGSIVFDSEIISKI----------PQTKPARSQFKEDLNDRETDILELVADGLNNKE 163

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV NY++SI+ K   + R+  + Y
Sbjct: 164 IANRLSLSEGTVRNYVSSILEKLNLRDRTQLVVY 197


>gi|309790969|ref|ZP_07685510.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308227001|gb|EFO80688.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 215

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 13/225 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   ++       + E   G     LV         +D  + + 
Sbjct: 1   MTTIVLVDDHPIVRGGLRAALAAEPDWQVVGEGDDGVEGLTLVNQLHPDILVVDLQLPTI 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++R + ++              +F  +           A     Y     D   + 
Sbjct: 61  SGLDVLRQVRVTA--------PATRVIFFSMHSEDAYVREALAAGAVGYVLKDADAVELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+ +    GR +         +++AY      S D H      LT RE + L   ++G 
Sbjct: 113 HGIRVALQGGRYLSPTLAER--MISAYLHQ--PSPDQHIDWAEMLTARERQVLILAAQGL 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI   L IS  T   +  +++RK   K ++  + +A    ++
Sbjct: 169 SNAEIGDRLTISPRTAETHRTNLLRKLGLKGQTDLMHFAHERGLL 213


>gi|223934727|ref|ZP_03626647.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896682|gb|EEF63123.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 210

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 16/210 (7%)

Query: 36  MIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++ ++       ++  + E        GA            ++  D ++       +   
Sbjct: 5   VVVVEDDRGLREQLVQILETASDIKCFGAFASAEEALPQILDRNPDVVLMDIKLPGMSGI 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             ++E  K    +Q    +   V+              N Y   +    ++   +  ++ 
Sbjct: 65  QCVAEIKKVTPAMQ---VIMVTVYEDSERIFRALKAGANGYLVKSSPPEQLLEAIRDVYK 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  +          +A+     F        +   L+ RE E L  ++ G    EI   
Sbjct: 122 GGAPMSSH-------IASKVVKHFHLIGSSPREAENLSPREQEVLELLALGFIYKEIGDK 174

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L I   TV  Y+ +I +K   ++R  A+A 
Sbjct: 175 LNIGTETVRTYVKNICQKMHVRSRLEAVAK 204


>gi|223936168|ref|ZP_03628081.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895030|gb|EEF61478.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 63/242 (26%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I+L  +       +  L      +  +   +                G     + 
Sbjct: 1   MANIKILLADDHTVVRQGLCALLLAEHDIEIVAEAET---------------GRQAVQMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +  R +           L     L    +           
Sbjct: 46  NRYLPNIIIMDVAMPLLNGLEATRQITSK--------LPGAKVLVLSSYGDEDSVQKLTE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +              +          F++         
Sbjct: 98  AGAAGYVIKQTAANDLVTAIREVHKGNAFYSAAISQRLR---DQLHARFRNGKSVRNSLT 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I++G+ + ++A  LGIS  T+  +   +M K      +G   YA+   
Sbjct: 155 LLTPREAEVLVLIAKGQPNKQMASELGISIKTIEKHRQQVMNKLNIHDIAGLTRYAISKG 214

Query: 245 IV 246
           I+
Sbjct: 215 II 216


>gi|308176496|ref|YP_003915902.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743959|emb|CBT74931.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 220

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 18/217 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + +   +     +  + E   G S   + R        +D  +      
Sbjct: 3   VLIVDDHATVRMGIRLVLQAAEDLEVVGEAADGRSAISMARALSPDVILMDLRMPVLDGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +  S              +    F              + +   + +   I +G+
Sbjct: 63  EATKALHGS-----------CRVVVLTTFDDDQYLFGALQAGAHGFLLKSAEPQAIIMGV 111

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       I       A               LTGRE E L  ++EG ++ 
Sbjct: 112 RAAGRGESVLDPQVTSRI------LARALAPEPGTAKLPDGLTGREREVLDGLAEGLSNP 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++A  LGI ++TV  +++ ++ K    TR  A   A 
Sbjct: 166 QLAQRLGIGQSTVKTHVSQVLAKLGVSTRLQAAKIAY 202


>gi|270159193|ref|ZP_06187849.1| Legionella transmission activator LetA [Legionella longbeachae
           D-4968]
 gi|289165979|ref|YP_003456117.1| Legionella transmission activator LetA [Legionella longbeachae
           NSW150]
 gi|269987532|gb|EEZ93787.1| Legionella transmission activator LetA [Legionella longbeachae
           D-4968]
 gi|288859152|emb|CBJ13081.1| Legionella transmission activator LetA [Legionella longbeachae
           NSW150]
          Length = 219

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 65/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + +   +     +  + +   G    +LV+        LD  +     +
Sbjct: 4   VLIVDDHALVRMGIRRLLEDMSDVEVVADAESGEQALVLVKQYSPDVVLLDMKMPGIDGW 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +  S              +      +              Y +       +   +
Sbjct: 64  EVTRRLKKSN--------PHVKVIAVTAMCSDVLPTRVLQLGAMGYLTKESGAEEMAAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + +  +   ++ + +          +        L+ RE++ +  I+ G    
Sbjct: 116 RKVAKGEKYLSAEIAQKMAINSLE--------EAQGSPFNILSEREMQVMLMITSGMNVQ 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI+  L +S  T+N Y      K   K        A+++ I+
Sbjct: 168 EISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGII 209


>gi|258624788|ref|ZP_05719719.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603]
 gi|258582950|gb|EEW07768.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603]
          Length = 207

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGN---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + D        LT 
Sbjct: 101 GYLLKDTEPDQLVTLLKQAMQGEKAFSESVER-----------YLLNRDEESNPFETLTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 215

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 66/226 (29%), Gaps = 14/226 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
             + +    D       L   +     +  + E   G      +  +      LD  +  
Sbjct: 1   MAARILLADDHALVRSGLRMIIDAEPDLQVVAEAADGYEALSALDTETVDLAILDIAMPR 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                  R +  S  D           L   ++              + Y   +     +
Sbjct: 61  MTGLQAAREINRSHPD--------VRILILSMYDNEQYFFEALKAGASGYVLKSVADRDL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                        +    +  +     +     ++       D  LT RE E L  I+EG
Sbjct: 113 LEACRATLRGEPFLYAGAITALIRDFLH-----RARQGGEPPDSILTPREEEVLKLIAEG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L IS  TV+ +  +I+ K   + R     YA+R  ++
Sbjct: 168 YSTREIAATLTISAKTVDRHRTNILAKLGLRDRLALTRYAIRAGLI 213


>gi|86136672|ref|ZP_01055251.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
 gi|85827546|gb|EAQ47742.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 36/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +       +  +    D +  +  L+       +  AL+              
Sbjct: 5   VRVLIVDDHPMVAEGIQSILESYDDIQVLACLNDGAEAVDQAQALS-------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       L    A     +     +        +  +     T  +   
Sbjct: 51  ------PDVILMDLNMPRLGGLSATEMILERLPETRIV---ILTMHDSPEYISTALSHGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I+  +  +    R +       +   +                   LT
Sbjct: 102 MGYILKDVPTEEIKQAIDTVMAGERYLCTGAEIALKPKSGEAREA-------------LT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 149 GREQTILLELAQGKSNKDVAHSLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|320333054|ref|YP_004169765.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754343|gb|ADV66100.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 216

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 66/228 (28%), Gaps = 19/228 (8%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R + +   P   + +   +  D  +       +  + V A         L +   L
Sbjct: 2   PDPIRVAVIDDHPLFREGVIAALQADHDIDVIAEGGSAPDAVQA-----AAHHLPEVMLL 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       L                     +         + +         Y    
Sbjct: 57  DLHLPGGGLEALRE---------VAASYPATRVVMLTFSEDEADVLAALKAGARGYIIKG 107

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +R  +  +      I       +    A         +   G    LT RE + L
Sbjct: 108 VTGRELRGVIRAVSQGEVSITPMLASGLLYELARP-----EREPPGGLMTTLTARERQIL 162

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ++ G+++ EIA  L ++  TV +Y+ ++++K   + R  A   A R
Sbjct: 163 EGVAAGRSNKEIARELELTEKTVKHYMTNVLQKLQVRNRVEAALLAQR 210


>gi|300791071|ref|YP_003771362.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800585|gb|ADJ50960.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E        +    D +  +  +   VS   +   L               
Sbjct: 2   IRVLIADDQEMVRMGFRMILDAQDDIEVVADVADGVSAVSKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +A    D           +    F       T      
Sbjct: 47  RPDVCLLDIRMPGLDGLEVARQLA--GPDVTDP----LKVVVVTTFDLDEYVHTALRNGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   +        ++       +     +      +          LT
Sbjct: 101 SGFLLKDAGPALLIEAVRAADRGDALVSPQITVRL---LKHFDGSGSAKRQVKPPSEPLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +   + G T+ EI   L +S +TV  ++AS+  K   + R    A+A R+ +V
Sbjct: 158 ARELDVVKAAARGLTNTEIGAELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGVV 216


>gi|269128746|ref|YP_003302116.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313704|gb|ACZ00079.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 220

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  +L  ++      V+ +    + +  +           +   +               
Sbjct: 5   IRALLADDEPIVRVGVNAILGSDEGIEVVAEAADGAQAVEQARRV--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +          ++     +    F           G  
Sbjct: 50  RPDVALLDVRMPGLDGLAAASEIRR--------IVPETAVIILTTFGESSYIQRALTGGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   T     +   +  +      +         +++    +          +   LT
Sbjct: 102 SGFLLKTSGPRELISAVRAVAGGAAYLSPWVAK--YVISQMPNDRISRAARARERVARLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE + L  + +G ++ EIA  L +   TV  Y+++I+++   + R  A   A    +V
Sbjct: 160 GRERDVLGLLGQGLSNAEIAARLHLVEGTVKGYVSTILQRLNVENRVQAAILAYEAGLV 218


>gi|284028851|ref|YP_003378782.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808144|gb|ADB29983.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 252

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 72/251 (28%), Gaps = 28/251 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q+ +++  +     + ++ +      L  +            +                
Sbjct: 9   DQIRVLVADDQGVIRTGLAMILDHEPDLTTVAQAGDGEEALRLIDRF------------- 55

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +           +  + ++       RP  L    F      ++    
Sbjct: 56  --DPDVVLMDIRMPVMDGLVATERITRANQE---AGRSRPAVLVLTTFDDEAYVLSAVRA 110

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
             + +     D   +   +  +     ++       +            +  V       
Sbjct: 111 GASGFLLKDTDPDLLVAAVRAVHRGDSLVDPASTRVLLERCVELERQVGADPVAAAPHAA 170

Query: 185 ---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                    +L+ RE + L W++ G ++ ++A  L +S  TV  +++S++ K    +R  
Sbjct: 171 DGRWTGLLAQLSERERDVLVWMARGLSNRDLANKLFVSETTVKTHVSSVLSKLGLSSRVQ 230

Query: 236 AIAYAVRNNIV 246
           A+  A    +V
Sbjct: 231 AVVVAYEAGVV 241


>gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 245

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 27/234 (11%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGAS---------HFLLVRWDLFQEQKLDSIVSSDWPF 84
           AR++ +D        + A  E  G              L+     Q    D ++     +
Sbjct: 16  ARILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTTQPQLIISDIMMPGMDGY 75

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +   +   +  V+      F        + I       + Y    FD   +   +
Sbjct: 76  QFLAQVRKLDPYSHLPVV------FLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIV 129

Query: 145 MLLFPKGRIILRDR--LWEIGLLAAYQANMFKSYDVHWGK----------DFELTGREVE 192
             L  + R          E+  + A  +       +                ELT RE +
Sbjct: 130 SNLIERSRAASPSEVVARELASIRALLSERTLPPTIPSQPPTPTPLPPPIKVELTPREQQ 189

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++EG  + EIA  L  S   V  Y+  ++ KT T +R+  + YA+   ++
Sbjct: 190 VLEKVAEGLMNKEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLI 243


>gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae]
          Length = 257

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 67/216 (31%), Gaps = 28/216 (12%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
              F      L +    +    +++P   V         +   V+        P      
Sbjct: 38  FGEFRYAYIILNKRNPAELFAITNYPDQWVEIYKERNYQQIDPVVIFALNRVSPFEWDES 97

Query: 118 ------------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----W 160
                        +I+    + N Y  +  D       L ++     ++   +       
Sbjct: 98  LSINSNVDFSKIFDISKDYNVVNGYTFVLHDYNNRLAMLSIMMVSSEVVEIKKKIKEHKN 157

Query: 161 EIGLLAAYQANMFKSY----------DVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           ++ +L         S           +   GK+   + RE E L W S GKT  EIA IL
Sbjct: 158 DLHMLLLDVHEKITSLYREMIRQNYQNPASGKEC-FSPRENEILYWASMGKTYSEIATIL 216

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GI   TV  +I S+++K        AI   V   ++
Sbjct: 217 GIKLGTVKFHIGSVVKKLGVMNAKHAIRLGVELQLI 252


>gi|302549505|ref|ZP_07301847.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467123|gb|EFL30216.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 219

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 14/227 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
           S  + +    D       +   +     +  + E   GA      R        LD  + 
Sbjct: 4   STPTRILLADDHALVRRGVRLILDAESDLTVVAEADDGAEAVAQARAHRPDLAVLDIAMP 63

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 L    A  E  +     +        ++              + Y   +     
Sbjct: 64  -----RLTGLQAARELSRTCPQTRIL---VLTMYDNEQFFFEALGAGASGYVLKSVADRD 115

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +             +    +  +        +  +       +    T RE E L  ++E
Sbjct: 116 LVEACRATMRGEPFLYPGAVNAL---VRDFLDRAREGRALPSRAI--TDREEEILKLVAE 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G TS +IA +L IS  TV  + A++++K   K R     YA+R  ++
Sbjct: 171 GHTSQQIADLLVISPKTVERHRANLLQKLGLKDRLELTRYAIRVGLI 217


>gi|302519560|ref|ZP_07271902.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302428455|gb|EFL00271.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 234

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 14/202 (6%)

Query: 48  RMYALTEYVGASH-FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
           R+  + E   A      VR  +     LD  +       +++  A    D    V     
Sbjct: 44  RVTVVGEAADADAAVRSVRELMPDVVLLDVHLPGGGGLSVLQRCADLVMDTERPV----R 99

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            L   V     + I         Y +   +   +   +  +     +           LA
Sbjct: 100 FLALSVSDAAEDVIGVIRAGSRGYVTKAINGTELVAAIHRVNEGDAVFSPR-------LA 152

Query: 167 AYQANMFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            +  + F   +      +  +LT RE + L  I+ G +  EIA  L IS  TV ++++++
Sbjct: 153 GFVLDAFSNNTVPPVDEELDKLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAV 212

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           +RK     R     +A    +V
Sbjct: 213 LRKLQLSNRHELTRWAAARRLV 234


>gi|293115534|ref|ZP_06604529.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
 gi|292809348|gb|EFF68553.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM
           2876]
          Length = 211

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 74/241 (30%), Gaps = 30/241 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            ++ ++  V+  +DE     +        ++A    ++            T + G     
Sbjct: 1   MKMDKIKTVIIDDDEIVVMSLK-------MIAESSGIE---------VVATGHSGEDAVR 44

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L           D  ++          +     D           LF   F         
Sbjct: 45  LYELHKPDILLSDIRMNGMDGTVAAAQILKKNPD--------ARILFLTTFSDDEYITKA 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     D   I   +  ++    +  R+ +  +  +     +    +      
Sbjct: 97  LKYGVKGYILK-QDFEGIVPAIKAVYKGQSVFGREIVGRLPNITGENESRESKFFGK--- 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              +T +E E +  +++G ++ EIA  L +   TV NY +SI+ K   + R+  + Y  +
Sbjct: 153 --GITEKEFEIIKLVADGLSNKEIASRLYLGEGTVRNYFSSILDKLELRDRTQLVVYYYK 210

Query: 243 N 243
           N
Sbjct: 211 N 211


>gi|41409369|ref|NP_962205.1| hypothetical protein MAP3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398189|gb|AAS05819.1| hypothetical protein MAP_3271c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 222

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L +    L  +           R+ A                
Sbjct: 2   VKVFLVDDHEVVRRGLCDLLSSDPDLQIVGEAGTVAEAKARIPAA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 47  RPDVAVLDVRLPDGNGIELCRDLLSEHPDLRC--------LMLTSFTSDEAMLEAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +           +           LT
Sbjct: 99  SGFVIKDIKGMELARAIKDVGAGKSLLDNRAAAAL-------MAKLRGSAAQADPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A + N
Sbjct: 152 EQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKLN 208


>gi|88856002|ref|ZP_01130664.1| two-component response regulator [marine actinobacterium PHSC20C1]
 gi|88814869|gb|EAR24729.1| two-component response regulator [marine actinobacterium PHSC20C1]
          Length = 209

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     S +  L + +D +  +                    GA    +    
Sbjct: 2   IRVVVADDHPVVRSGIVGLLSSADDIDVVGEAGD---------------GAEAVAIATRL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +  D           L    + +    +T      
Sbjct: 47  SPDVVLMDLRMPGVDGAQATAQIVAARPD--------VRVLILTTYESDENILTAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I  GL  +      +          +AA      +           L+
Sbjct: 99  SGYLLKAAPQDEILAGLRSVARGEVALAPS-------IAALLVKRMREPARVA-----LS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++EG ++  IA  L +S  TV  ++  +  K   K R+ A+  A+   ++
Sbjct: 147 ERETQVLALVAEGNSNRAIAAALFVSEATVKTHLIHVFEKLDVKDRTRAVTKAMELGLL 205


>gi|317126112|ref|YP_004100224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590200|gb|ADU49497.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 217

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 65/230 (28%), Gaps = 24/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           + R   V       +  +R++     +      Y+     G     LV         +D 
Sbjct: 5   QLRVLIVDDHALLREGTSRILEQYSDIKVVGDAYS-----GEVALALVNRLRPDVVLMDV 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +A          ++         +                + S    
Sbjct: 60  RLPGMSGIEATRRIAQDH-----PGIKVLIV---TAYDDEEFVRRGLEAGAVGFISKAAP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +  G+        +           L +                  LT RE + L+ 
Sbjct: 112 GRELATGVRDAAAGRLV-----------LQSQLLARVLRPRGPANDGVMLTDRERQVLSL 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +G  + EIA  L IS  TV  +  S+  K    +R+ A+  A+ + I+
Sbjct: 161 LVDGLHNREIADRLHISSRTVERHCDSLYGKLGAGSRTEAVVKALSHGII 210


>gi|153206810|ref|ZP_01945651.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924176|ref|ZP_02220008.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|212212538|ref|YP_002303474.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212218401|ref|YP_002305188.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120577173|gb|EAX33797.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916380|gb|EDR34984.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|212010948|gb|ACJ18329.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212012663|gb|ACJ20043.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 214

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D L     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHLLIRQAMRLMLEEIQGVRIVGEAGTGEEGLKLRRDKEPDVIILDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R     +  +    ++                +         + + + D   +   +
Sbjct: 64  ELSR-----KLLRRDATIKILMVTGM---EGDLLPMRLLEVGVRGFITKSSDTTELEQAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++   R I       + L         K+         +L+ RE+E L  +++GK ++
Sbjct: 116 RAVYKGQRYISSAIANRLAL--------SKTTTAATSPFKKLSDREMEVLLLLAKGKKAE 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L I+  TVN++   I  K   K     I  AV+  +V
Sbjct: 168 AIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGLV 209


>gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 258

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 25/239 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            ++                 L    G  +FL+ R    +      I++   P   +    
Sbjct: 20  FISACYQAGNADRVRSEFVTLIREYGFEYFLVSRRMTGELASTGQILAQHLPEGWIEVYR 79

Query: 92  LSEKDKYYNVLQRPTELFCPVFH-----TLPENI-----------TPPAGMDNRYCSLTF 135
             + +    V +    +  P         LP  +               G+   Y     
Sbjct: 80  AKKYNLVDPVRKVIGMVHKPFQWKEALEGLPRAMHRKRANVFFHDAGRYGLQGGYAFPVH 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--------KDFELT 187
             A     +  L  + R +    +  +                              ELT
Sbjct: 140 GRAGFIGAV-FLGGEDRQLPSLHVELLDAATRAVFWRLLDLSGQVHNLNNAPNVSALELT 198

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E LT +++G TS EI   L IS +TV+ YI  I R+ + K R   +A A RN ++
Sbjct: 199 RREMEVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRNGLL 257


>gi|302532622|ref|ZP_07284964.1| two-component system response regulator [Streptomyces sp. C]
 gi|302441517|gb|EFL13333.1| two-component system response regulator [Streptomyces sp. C]
          Length = 226

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 83/239 (34%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  ++    S    +   SD +  +   +                GA    ++R +
Sbjct: 2   IRVVVVDDEALVRSGFQMILNASDGIEVVATAE----------------GAQAADVIRRE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +       ++R +    +  +              F T    +T      
Sbjct: 46  LPDVVLLDIRMPDVDGLTVLRQIQELPEPPH--------VAMLTTFDTDEYILTALRSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +  ++   +  L   G ++         LL  +        D    +   L+
Sbjct: 98  SGFLLKDTEPEQLAQLVRTLAAGGVVMSPKASR--ALLRGHPGAGAPQ-DADVARVGLLS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I++G ++ +I   + +S+ TV ++++SI+ K    +R  A   A R  ++
Sbjct: 155 DRERDVLVLIADGLSNADIGTRIHLSQGTVKDHVSSILTKLRVTSRVQAALLAERAGLL 213


>gi|227081385|ref|YP_002809936.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227009273|gb|ACP05485.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
          Length = 214

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D +                         
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSSEEAVKWCRT---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +    A  +  +    ++    +   V    P          
Sbjct: 46  ----NHADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 209


>gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family
           [Mycobacterium abscessus]
          Length = 222

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 71/244 (29%), Gaps = 27/244 (11%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N + +Q+++++  +       VS    R    A +  +                      
Sbjct: 4   NTDSEQISVMVVDDHPMWRDGVS----RDLQAAGLRVVATADGVASSGRIAA-------- 51

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                      K D ++      D     A +              L         + + 
Sbjct: 52  ---------TVKPDVVLMDMQLTDGDGAQATAAVLSASP---HSHILVLSASAEREDVLE 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y   +   A +   +        +         GL+      M  +      
Sbjct: 100 AVKAGATGYLVKSASAAELIDAVRATAKGQAVFTP---GLAGLVLGEFRRMSSAPAADAD 156

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ RE E L  +++G ++ +IA  L +S  TV N++ S +RK     R     YA+
Sbjct: 157 ETPRLSDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQSTLRKLQLGNRVELTRYAI 216

Query: 242 RNNI 245
            + +
Sbjct: 217 EHGL 220


>gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
 gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
          Length = 217

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 72/239 (30%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +     + +  L         +                               
Sbjct: 2   INIILTEDHPIVRNGIKLLLESQQNFCVIGEASNGKETLRLFR----------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D +++     D+       E    Y  ++            +           
Sbjct: 45  --NNVIPDVLITDISMDDMDGLQLTEEIRSNYPQVKIMILSMIGQREFISNCFAK---GA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +   GR +  +   ++                    + EL+
Sbjct: 100 NAYLLKKSSYEEMLFAINHVAKGGRYLCDELSMDLIENMNNIGLDLAGKTRLID-EIELS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ISEG T+ EIA  L +S+ TV  +  +++ KT  K  +  I YAV+N ++
Sbjct: 159 DRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALIKYAVKNGLI 217


>gi|182419652|ref|ZP_02950897.1| transcriptional regulatory protein DegU [Clostridium butyricum
           5521]
 gi|237665755|ref|ZP_04525743.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376542|gb|EDT74119.1| transcriptional regulatory protein DegU [Clostridium butyricum
           5521]
 gi|237658702|gb|EEP56254.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 216

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 69/232 (29%), Gaps = 23/232 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  + +     +  + +  + +  +  +D        +                  
Sbjct: 2   INVIIADDQKIVREGLKMILSLDNEIKVIGEVDNGQDLIELLKKNI-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  + +                 +    F+      T      
Sbjct: 48  YPDVILMDIRMPIINGVDATKIIKEK--------FSHIKIIILTTFNEDEYIFTGIRNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   +        ++  +   +I        +  K+ + +  K   LT
Sbjct: 100 DGYILKDAGFDEISKAIKTACAGNILLNPEVASKIIKEFNKL-SPNKAINYNKEKLNLLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE++    + +GK++ +I   L ++  T+ NY+  I  K    +R+    +
Sbjct: 159 KREMDVAILVGQGKSNKDICNELFLTEGTIKNYLTKIFEKLNLASRTELALF 210


>gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
 gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC
           33641]
          Length = 245

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 31/233 (13%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                  +    +  G   +  +  +   +  L   + S++P D V+    +       V
Sbjct: 12  NEDIRNYIQRRIKSYGDLRYSYLVMNK--QTPLHPTIISNYPLDWVKKYKKNSYHLIDPV 69

Query: 102 LQRPTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +    +   P                    +     + N Y  +  D +     L +   
Sbjct: 70  ILTAKDKVAPFAWDDNSVINKKSTDSAVFKLAREYNIVNGYTFVLHDNSNNMATLNISNG 129

Query: 150 KGRIILRDRLWEI-----GLLAAYQANMFK-----------SYDVHWGKDFELTGREVEC 193
               I  D   EI      +L                    S      +D   + RE E 
Sbjct: 130 SDDSIYFDESIEINKEKIQMLLILTHEKMLGLYHNSAEKNESGTNKIERDI-FSPRENEI 188

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W S GKT  EI++ILGI R+TV  +I +++RK        AI   +   ++
Sbjct: 189 LYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241


>gi|90411062|ref|ZP_01219075.1| two-component response regulator of nitrate reduction
           [Photobacterium profundum 3TCK]
 gi|90327908|gb|EAS44229.1| two-component response regulator of nitrate reduction
           [Photobacterium profundum 3TCK]
          Length = 197

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 28/224 (12%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +S+L    D L     +   +     + A+ +  G     LV+         D  +    
Sbjct: 1   MSNLVLADDHLIVAQGVASLLEPEHTVLAIAKD-GEELIALVKKHKPDLVITDISMPGMT 59

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               V  +            +    +   +           A   N Y         +  
Sbjct: 60  GIAAVARLRRD--------FKSVKMICLTMHDEPEYAEGAIAAGANGYVLKHQAGEELVK 111

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +   GR I                    +      +   LT R++  L  + +G++
Sbjct: 112 AVDTVMNGGRYIS-------------------NSIDMTSEKPTLTARQLSVLQLLVKGRS 152

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++A  L IS  TV  +  ++MR    KT +  I YA+ + ++
Sbjct: 153 AKQVAEELFISSRTVEFHKYAMMRLLNVKTSAELIQYAINHGLI 196


>gi|90579871|ref|ZP_01235679.1| putative nitrate/nitrite response regulator protein [Vibrio
           angustum S14]
 gi|90438756|gb|EAS63939.1| putative nitrate/nitrite response regulator protein [Vibrio
           angustum S14]
          Length = 208

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 24/224 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + +++ ++                G     L          LD  + 
Sbjct: 6   VMIVDDHPLMRRGIGQLLSIESDFQLVGEASN-----GNDAIALAHEKSPDLILLDLNMK 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +              +     +   V  +  +  T      + Y     +   
Sbjct: 61  GLSGLDTL-------IAMRDEGILACIVI-LTVSDSRSDIKTVLNAGADGYLLKDTEPDE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L      G+                     +S +       +LT RE + L  +++
Sbjct: 113 LIEQLKSALCGGKAYSDI-----------VKECLESPNTPTNILSQLTDRETQILQEVAK 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G+ + +IA  L IS  TV  ++ S+++K   K+R+ A    +  
Sbjct: 162 GQRNRQIAEQLFISEATVKVHMKSLLKKLQVKSRTAATILYLEA 205


>gi|56697420|ref|YP_167788.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56679157|gb|AAV95823.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 216

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 25/232 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V   P  ++ +  ++     +     +    E VG S  LL          +
Sbjct: 3   DTPVRVLIVDDHPMVAEGIQAILESYDDIQVIGTVGDGREAVGRSLALL-----PDVILM 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +           +           +     L   +  +     T  +     Y    
Sbjct: 58  DLNMPGLGGLGATEIIREQ--------MPDTRILILSMHDSPEYISTALSHGAMGYVLKD 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I+  +  +    R +       +                       LTGRE   L
Sbjct: 110 VPTEEIKQAIDAVMRGERYLCTGAKGSL------------EPKEGEEAREALTGREQTIL 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 158 LQLAQGKSNKEVAIALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 209


>gi|329296608|ref|ZP_08253944.1| response regulator [Plautia stali symbiont]
          Length = 219

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +                      + A     G       R  
Sbjct: 2   ISLLLVDDHELVRAGIRRIL---------------EDMKGLVIAGEVACGEDAVKWCRTH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +     D           +   +    P          
Sbjct: 47  PVDVVLMDMNMPGIGGLEATRKIVRFNPDI--------RIIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAASQEVVSAIRSVHAGQRYIASDITQQMALSQI-------EPQRAESPFSCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I+ G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITRGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|320450528|ref|YP_004202624.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
 gi|320150697|gb|ADW22075.1| two component transcriptional regulator, LuxR family [Thermus
           scotoductus SA-01]
          Length = 209

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     S + HL      +  +  +         + A+               
Sbjct: 2   IRVVLVEDHGLVRSGLRHLLEARGPIQVVGEVGTGQEVLALLEAV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +             +   L   +   L           
Sbjct: 47  EADVAILDVSLPDCTGIELCRTLRER--------FPKLRLLALSMHEDLEYVRGFLQAGG 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   ++ L    R +       + +                G++  L+
Sbjct: 99  QGYVSKAAVDQELLDAVLALARGERYLNPALAMRLAM----------EIVREEGEEEPLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G +  E+A  L IS  TV  Y    M K   K+RS  + YAV+   +
Sbjct: 149 PREEEVLRLLAKGLSHKEVAEHLSISEKTVATYRERGMEKLGLKSRSDLLRYAVKRGWL 207


>gi|316935339|ref|YP_004110321.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603053|gb|ADU45588.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 223

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 59/242 (24%), Gaps = 29/242 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ + L  +     S +  L      L  +       +   R   L             
Sbjct: 7   SRLRVFLADDHPVVLSGMKALVADDSGLEVVGEASDGPNALRRATEL------------- 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      ++ R                   L   V             
Sbjct: 54  --RPDVAVFDLSMPGLNGIEVARKFLA--------ACPDCRVLVLTVHEDGAYLRQLLDL 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDF 184
               Y         +  G+  +   G  +        IG    +  N             
Sbjct: 104 GVAGYVLKRSATDELIRGIHAVGSGGIYLDPAIAGRAIGRTTPHLHN-----GDEHNAVS 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L   + G ++  IA  L I   +V  Y A  M K     R   + +A+   
Sbjct: 159 ELSTREIEVLRLAAIGHSNKTIAAKLQIGAKSVETYKARGMAKLGFHNRVEVVRFALSMG 218

Query: 245 IV 246
            +
Sbjct: 219 WL 220


>gi|227502186|ref|ZP_03932235.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077010|gb|EEI14973.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 205

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           VN++L  +     + +  +      +  ++  +                           
Sbjct: 2   VNVMLIDDHPVVRAGLRAILNTFAEVQVVLEGNDGADV-------------DKLFTDDAP 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         + +  +              L    + T  + +       
Sbjct: 49  EVDVVVCDIQMPGVDGITATKKVTEAGGPP---------VLILTTYDTQADILAAVEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   ++    + R +  + +  +                    +  L+
Sbjct: 100 MGYLLKDSPEEELHEAVLNTAARRRTLAPEVVNLLAQRVGQ-------------PEQSLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ E+A  L IS  TV  ++  I +K    TR+ A+  A    ++
Sbjct: 147 TRELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|238786097|ref|ZP_04630054.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
 gi|238713004|gb|EEQ05059.1| Two component transcriptional regulator, LuxR family [Yersinia
           bercovieri ATCC 43970]
          Length = 209

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 72/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + +          A+++ L+  +       +  E        L   D      +D  + 
Sbjct: 4   VALIDDHTVVRSGFAQLLSLEKDIRIIGEYGSAAEA----WANLANID-VHVAVMDISMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L++ +           +     +   ++ T     +      + Y +       
Sbjct: 59  DESGLSLLKRLRQK--------MPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCGPDE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +   G  +  D L  +           +       +   LT RE E    +  
Sbjct: 111 LVQALRTVNGGGLYLCSDALRAL-----------RHMPQQPQQLAVLTPREKEIFQLLIN 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 160 GISVKSIAEQLRLSHKTVHVHRANILGKLQCETTVELVHFALQHQLL 206


>gi|320107298|ref|YP_004182888.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319925819|gb|ADV82894.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 204

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 24/223 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            + T  D       +   ++    M  + E   G    +  R  L     +D  +     
Sbjct: 3   RILTVDDHPLLRAGISSVINAQPGMEVVAEAADGEQAIVEFRKHLPDVTVMDLRLPRKSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +             +   +    +    + +       + Y       A +   
Sbjct: 63  IEAIVAIRQD--------YPKARIIILTTYAGDVQALKAFKAGASGYLLKNMLRAELVDT 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +  +      ++A +  +              L+ REVE L  +S G ++
Sbjct: 115 IRSVHAGIRRVPAEIA---AMMAEHAGDEA------------LSPREVEVLRHVSAGHSN 159

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S +T+  ++ +I+ K     R+ A+  A+    +
Sbjct: 160 KVIASDLDLSEHTIKGHLKNILSKLGANDRTHAVMIALNRGFL 202


>gi|297564146|ref|YP_003683119.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848595|gb|ADH70613.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVS 79
             V  +    D   R+            +  + E       + ++         LD  + 
Sbjct: 12  DAVPRVVIVDDH--RLFRSGVRGELGDAVNVVGEAGDVDSAVHVIGEKQPDLVLLDVHLP 69

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +++R +                 L   V     + I    G    Y + T     
Sbjct: 70  GGGGVEVLRRVLAQHPQI--------RFLALSVSDAAEDVIGVVRGGARGYVTKTISGRE 121

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWI 197
           +   ++ +     +           LA +  + F + D      +   LT RE E L  I
Sbjct: 122 LADAIVRVADGDAVFSPR-------LAGFVLDAFSATDAPPVDPELDRLTQREREVLRHI 174

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G    E+A  L IS  TV  +++S++RK     R     +A    +V
Sbjct: 175 ARGYAYKEVAKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARRLV 223


>gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144]
          Length = 209

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+   + E     +S   +  + +  +           + + L               
Sbjct: 3   IKILFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKEAITKAHEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +    +           L +   +    F    E         
Sbjct: 48  KPDLILMDLLMDDMDGVEATTEIKKD--------LPQIKVVMLTSFIEDKEVYRALDSGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   T   + I   +   +    +   + L ++        N  K     +     LT
Sbjct: 100 DSYILKTTSASDIADAVRKTYEGESVFEPEVLVKM-------RNRMKKRAELYE---MLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 219

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 28/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q   ++L  +       +  +         +               +             
Sbjct: 5   QPTRVLLADDHALVRRGLRLILESEPDFTVVAEAGDGAQAVALAREV------------- 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                  ++D  V       L    A  E  +    L          +            
Sbjct: 52  -------EVDLAVLDVAMPRLTGLHAAREMSRRSPALPILMLSM---YDNEQYFFEALKA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   +     +             I  D L  +     +     ++       +  
Sbjct: 102 GASGYVLKSVADQDLVSACRGAVRGEPFIYPDALTTLMREHLH-----RAGRGEPVPERV 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E +  I+EG +S EIA +L IS  TV  + A+I++K   + R+    YA+R  +
Sbjct: 157 LTAREAEVVKLIAEGCSSREIAALLVISTKTVERHRANILQKLDMRDRTQLTRYAIRTGL 216

Query: 246 V 246
           +
Sbjct: 217 L 217


>gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 214

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 62/236 (26%), Gaps = 30/236 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++          +  +  ++     +         +                L   D  
Sbjct: 1   MLVVDSHPIVRDGIEVVLGKAYAGIDVGGAADMAEASD---------------LCGRDRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D ++  D P   +  +                 +      +            + 
Sbjct: 46  DLVLMDVMLPGDDPLPAMGEILR--------AHPGLRFVVFTALGSEARAAEAIRFGASG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         I   +  +      I          L   +               ELT R
Sbjct: 98  YLLKWCSPDGIVQAIRRVMAGRVHIDPS-------LDEARVASAAGGRALASPVDELTRR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R   
Sbjct: 151 EKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206


>gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 235

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L   +              L + +G  +  L        Q     + S++P + +   
Sbjct: 7   EHLHAFVSERNPQKLFDIAVHLAQELGMDYLGLNIRIQIATQTPRLYLYSNYPSEWIERY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
              +  K             PV  T                 G+ + +     D+     
Sbjct: 67  QRDDFYKQDPAAHMSHSSTTPVLWTDDLYRDAPQFREAACQHGLRHGWTQSLHDLQHNES 126

Query: 143 GLMLLFPKG---RIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            + +  P      + L D+   +  L      +      +        ++ RE+E L W 
Sbjct: 127 QISVARPAEKIDIVELYDKAGSVQWLCHTLHAVLGEHHLNALCPPQPRMSERELEVLKWS 186

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 187 AAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 242

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
            R++ +D        + A  E  G      V  +      ++ +  ++ SD         
Sbjct: 15  PRILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L +K +    L     +F        +         + Y    FD   +   +  +  +
Sbjct: 75  GLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134

Query: 151 GRIILRDRLW----EIGLLAAYQA---NMFKSYDVHWGKDFE----LTGREVECLTWISE 199
              +L +       ++G +A       +M    D H  +  +     T RE   L  ++E
Sbjct: 135 QERLLTEAARFANADVGQMAKQITEIKSMLSHGDKHHSRKDDSIPNFTPREASVLQLVAE 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++V
Sbjct: 195 GLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|221134465|ref|ZP_03560770.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 214

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I+L  + E   S +  +       + +  +                 G       R D
Sbjct: 2   VKILLVDDHELVRSGIRLILEGISTFSVVAEVKS---------------GEEAIRYCRHD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +A     +   V+        P+               
Sbjct: 47  APDIVLMDVNMPGIGGLEATKQIA--RMSENIRVICISMHTENPI------PAKVMQMGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   +   +   +  +    + I  +   +I +      +             +L+
Sbjct: 99  FGFITKNAEPDEMVRAVHKVVAGQKYIAPEIAQQIAIGKLDLGD--------SNPFDQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +  G+   +IA  L IS  T+N Y   +  K    +       A+R  ++
Sbjct: 151 DRELEITLMLVTGRRVPDIADSLNISPKTINTYRYRMFEKLEINSDVELTHLALRYKLI 209


>gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243]
 gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 223

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 64/231 (27%), Gaps = 26/231 (11%)

Query: 18  QRTSFVSHLPTRSDLLARMIP---LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +R   V   P   D +  ++        V     M   ++  G                L
Sbjct: 8   ERVLVVDSHPIVRDGIEVVLGKAYAGIDVDGAADMAEASDRCGRD--------RPDLVLL 59

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++  + P   +  +                 +      +            + Y    
Sbjct: 60  DVMLPGEDPLPAMGEILR--------AHPGLRFVVFTALGSEARAADAIRFGASGYLLKW 111

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I   +  +      I          L   +               ELT RE + L
Sbjct: 112 CSPDGIVQAIRRVMAGRVHIDPS-------LDEARVASAAGGRTLASPVDELTRREKQVL 164

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I++G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R   
Sbjct: 165 KLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYRYGY 215


>gi|50120831|ref|YP_049998.1| transcriptional regulator NarP [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611357|emb|CAG74804.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 210

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 35/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L     +   +                    G     L   D 
Sbjct: 8   RVLIVDDHPLMRRGIRQLLATDAIFDVIGEASN---------------GVEALSLANRDS 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     +         +
Sbjct: 53  PDIILLDLNMKGLSGLDTLHALRRDGIC--------ARVIVLTVSDAPSDIYALMDAGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +         +       I                       LT 
Sbjct: 105 GYLLKDSAPEHLLDSIRSSDAFSEQVRDALRHRIA------------IKETPSPFTVLTE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 153 RELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAATVLYLE 206


>gi|317047633|ref|YP_004115281.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316949250|gb|ADU68725.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 219

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E     +  +                      + A     G       R +
Sbjct: 2   ISLLLVDDHELVRVGIRRIL---------------EDMKGLVIAGEVACGEDAVKWCRNN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +      +Y   ++    +   +    P          
Sbjct: 47  PVDVVLMDMNMPGIGGLEATRKI-----MRYNPDIRI---IMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  AGYLSKGAAPQEVVSAIRSVHAGQRYIASDIAQQMALSQI-------EPQKAESPFSCLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I+ G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 152 ERELQIMLMITRGQKVTEISEQLSLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 209


>gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 189

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 63/211 (29%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +     
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQSGLDVAETLKKENS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLSASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 200

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAASIRNIMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|226359606|ref|YP_002777384.1| two-component response regulator DevR [Rhodococcus opacus B4]
 gi|226238091|dbj|BAH48439.1| two-component response regulator DevR [Rhodococcus opacus B4]
          Length = 215

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L      L  +           R+ AL               
Sbjct: 2   IRVFLVDDHEVVRRGIADLLASDPALTVIGEAASYAQAMARVPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D +  +L          F      +       
Sbjct: 47  KPDVAVLDVRLPDGNGIELCRELHSLMPDLHCLIL--------TSFTDEQAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +              D   G    LT
Sbjct: 99  SGYVVKDIRGMELAQAVHDVGAGKSLLDSRAAGVLMDKVR------ADADGKDGIFAHLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A + 
Sbjct: 153 NQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATKM 208


>gi|89900655|ref|YP_523126.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345392|gb|ABD69595.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 231

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 70/248 (28%), Gaps = 30/248 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + I++  +       ++ L  R   L  +           +   +             
Sbjct: 7   QPIRILVVDDHTLFRRGLTALLARDPQLCVIGDAADAGQALRKAQEM------------- 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD+ +      D +  +  +  +           L   V     +      G
Sbjct: 54  --QPDLILLDNHLPGVNGVDALPALREAAPNTV--------ILMLTVSEDENDLAAALRG 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T +   +   ++       ++  + + ++       +               
Sbjct: 104 GAAGYLLKTIEGDALTAAIVRAMQGDSVVAPEMMNKLVAAYRGTSKEVPGIGTAQPPAVS 163

Query: 186 -------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE + L  I+ G ++ EI    GI+  TV  ++  I+RK    +R  A  
Sbjct: 164 AGPAMASLSPRERDILRGIARGASNKEIGREHGIAETTVKIHVQHILRKLDVSSRVHAAV 223

Query: 239 YAVRNNIV 246
            A    ++
Sbjct: 224 IATEQGLL 231


>gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. NATL2A]
 gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. NATL2A]
          Length = 242

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
            R++ +D        + A  E  G      V  +      ++ +  ++ SD         
Sbjct: 15  PRILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L +K +    L     +F        +         + Y    FD   +   +  +  +
Sbjct: 75  GLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134

Query: 151 GRIILRDRLW----EIGLLAAYQA---NMFKSYDVHWGKDFE----LTGREVECLTWISE 199
              +L +       ++G +A       +M    D +  +  +     T RE   L  ++E
Sbjct: 135 QERLLTEAARFANADVGQMAKQITEIKSMLSHGDKNHSRKDDSIPNFTPREASVLQLVAE 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N++V
Sbjct: 195 GLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241


>gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 200

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 54/189 (28%), Gaps = 26/189 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV+        +D  +      +    +                 +    F   
Sbjct: 36  GKDAVQLVKLHKPDICIMDIEMPIMNGLEAAEEIKGYG----------CKVMILTTFARP 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      N Y         +   +  +    RI   + + E               
Sbjct: 86  GYFERAVKAGANAYLLKDSPSEELAASIRSIMAGRRIYASELVDEAY------------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G++  LT RE E L  I++GK + EIA  L I+  TV NYI+ I+ K     R  A
Sbjct: 133 ---SGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEA 189

Query: 237 IAYAVRNNI 245
           I        
Sbjct: 190 ITRFKEKGW 198


>gi|115372616|ref|ZP_01459923.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823849|ref|YP_003956207.1| two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370337|gb|EAU69265.1| two-component system regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396921|gb|ADO74380.1| Two-component system, regulatory protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 213

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 73/237 (30%), Gaps = 27/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIVL  +       +  L   +  L  +           R+  L+              
Sbjct: 2   INIVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRVRELS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R M     ++          +    F      +       
Sbjct: 48  -PDVVLMDVRMPRMTGLEALRAMRREAPER--------RVVLLTTFDEDSVVVEALRAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +        ++   +  +     ++       +          F   ++  G    LT
Sbjct: 99  KGFLLKDVTRDQLADAIRRVANGETLLPPGVAERVQRGFTEVPQEFPHAELPEG----LT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E +  I+ G ++ EIA +LG +  TV N  ++I+ K   + R+ A+  A+   
Sbjct: 155 RRELEVMRLIARGLSNREIATVLGTAEGTVKNQTSNILAKLGVRDRTRAVLRAMELG 211


>gi|315639869|ref|ZP_07895000.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484294|gb|EFU74759.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 211

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     L   ++    M  + E   GA  F+ +         LD  +    P 
Sbjct: 3   ILIADDHMIVRNGLSQVLNAQEDMCVVAEAADGAEAFIKLEAQSVDIVLLDISM----PP 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                       + Y  ++        ++          +     +   +    ++   L
Sbjct: 59  GENGLYTAKRMKEAYPKIKIVM---LTMYDERQYMEEAISYGIEGFVVKSEPNEQLIQAL 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   GR        ++        +     D        LT RE E L  I+ G ++ 
Sbjct: 116 RTVMNGGRYYTGINEADL--------SHLPHSDDEDQCYETLTKREKELLPLIALGYSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  T+  +  +I +K A       + Y V+++++
Sbjct: 168 EIASQLFLSVKTIEVHKTNIRKKLAINHYPELLRYCVKHHLI 209


>gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 34/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ +V+  +     S +  +      +A +       S    + A               
Sbjct: 13  QIRVVIADDHRVVRSGLRMVLDAEPDIAVVAEAGDVPSAERAVRA--------------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +  +     +  +           L     +   +              
Sbjct: 58  HHPHVLVLDLNMPGEQSLPAIPRLVAE--------LPETAVVVLTMQQDPAFAREALRSG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   + L       +  +                 +     G   +L
Sbjct: 110 ARGYVLKEAADDELVQAVRLAREGRTYLNPE-----------LGARMAAEPPPSGPPDDL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I+ G T+ EIA  L +S  TV ++ A I +K    +R+  + YA+ + ++
Sbjct: 159 TARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYALDHGLM 218


>gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 58/223 (26%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L         +  + E   G     +   +       D  +     
Sbjct: 4   RLVIVDDHPVVRDGLRGMFVEQADLEVVGEAEDGERGLAVALRERPDVVLTDLRMPGLGG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +A          +     L    +    + +         Y         +   
Sbjct: 64  AKFIGLLAER--------VPSARVLVLTTYDGDDDVLPALTAGAIGYLLKDSPREEVFRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +               V      EL+GRE   L  ++ G T+
Sbjct: 116 VRAAALGETVLSPAVAARLL------------NRVRTPAPAELSGRERTVLALVARGSTN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E A  L IS  TV  ++A I  K     R+ A+A A    ++
Sbjct: 164 KEAAAALFISETTVKTHLAHIYTKLGVSDRASAVAVAYSRGLL 206


>gi|313898867|ref|ZP_07832401.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956449|gb|EFR38083.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 225

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 73/238 (30%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E     +  + +  +    +  +         +                  
Sbjct: 2   IKIMIADDQELIRESLKIILSTKEEFKVIATVGSGKEVIEAIRR---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               ++ D I+      D+          + Y  ++    +    F       +      
Sbjct: 46  ----EQPDVILMDMRMPDMDGVHCTKFVKEVYPDVK---VIVLTTFDDDEYVYSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFE 185
           + Y      +  +   +  +   G I   +   +   + +  A  N+             
Sbjct: 99  SGYLLKGVSLDELSNAIKTVLQGGAIFNPNVASKAIRIFSQMAKNNVVTEKFQSQDDLPT 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+  E + +  +++G ++ EIA IL  +  T+ NY++ I+ K   + R+    + +  
Sbjct: 159 LSNTEWKIIQQVAQGLSNKEIAEILKFTEGTIRNYLSVILDKLELRDRTQLAIWYIHR 216


>gi|261821966|ref|YP_003260072.1| transcriptional regulator NarP [Pectobacterium wasabiae WPP163]
 gi|261605979|gb|ACX88465.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 210

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 35/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L     +   +                    G     L   D 
Sbjct: 8   RVLIVDDHPLMRRGIRQLLATDAIFDVIGEASN---------------GMEALSLANRDS 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     +         +
Sbjct: 53  PDIILLDLNMKGLSGLDTLHALRRDGIC--------ARVIVLTVSDAPSDIYALMDAGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +         +       I                       LT 
Sbjct: 105 GYLLKDSAPEHLLDAIRSSDAFSEQVRDVLRHRIA------------IKETPSPFTVLTE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 153 RELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAATVLYLE 206


>gi|239933385|ref|ZP_04690338.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291441749|ref|ZP_06581139.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291344644|gb|EFE71600.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 221

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V           R++     +     +       G       R        LD  
Sbjct: 2   IRVMVVDDEALIRTGFQRILEATDDIEVVAAV------PGGQAIRTARERRPDIVLLDIR 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +  +A   +  +  V+          F       T        +     D 
Sbjct: 56  MPDV---DGLTVLADLLRLPHPPVVA-----MLTTFDMDEYVATALRSGAAGFLLKDTDP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  L   G ++       +          +   +        LT RE   L +I
Sbjct: 108 DQLPYLVRTLADGGTVLSSKVTRTV----VDGYLNYGPQEDAARSLDPLTDRERAVLGFI 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG ++ +IA  + +S  TV +++++I+ K    +R  A   A R  ++
Sbjct: 164 AEGLSNTDIAARMHLSTGTVKDHVSAILTKLEVGSRVQAALLAERAGLL 212


>gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 262

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 23/238 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +DE     ++        +     L+   S       L         ++   
Sbjct: 46  PVRVLLIDDDEFMRRVIAQELLSDMRI----QLEGQGSSVRDGRRLLATHEFDVLMV--- 98

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +     FDL+R              +    +           +      
Sbjct: 99  --------DLRLGDGSGFDLIREARKLH--------RYCEIIVISALEDDAHVMHAFELG 142

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y      +      ++ +   G  I       +      Q +  +       ++  L
Sbjct: 143 ATGYLLKHAWLQSFAEAVLQVVNGGAAITPKLTRRLLTRMNLQGSGERPPTETPLREATL 202

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L +++ G  S EI+V LGIS  TVN +I +I +K    +R+ A++ A    
Sbjct: 203 TAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVHSRAQAVSLATHTG 260


>gi|158334970|ref|YP_001516142.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305211|gb|ABW26828.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 215

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 80/227 (35%), Gaps = 17/227 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T+  + L    D    ++ +   +         T   G     ++   +      D ++ 
Sbjct: 6   TADQNQLLLIDDDPNLILLVKDYLELRGY-EVTTAKNGREALRVLEKSIPNLIICDVMMP 64

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
               +  V+ +  + +  Y  VL    +        + + +T      + Y    F+   
Sbjct: 65  EMDGYAFVKRVRDNPQTSYLPVLFLSAKGQ------IQDRVTGLNTGADVYMIKPFEPDE 118

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +             I         ++     ++     V    D +LT  E + +  +++
Sbjct: 119 LVA----------QIEASLKQASRMMQKQANSLEGELSVQVPFDVDLTPTETKVIQLVAK 168

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L +S+ TV +++++++ KT    R+    +A+   +V
Sbjct: 169 GMSNREIADDLSVSQRTVESHVSNMLGKTGLNNRTELARWAIEQRMV 215


>gi|17231260|ref|NP_487808.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907780|ref|YP_322076.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|3603297|gb|AAC82626.1| two-component response regulator OrrA [Nostoc sp. PCC 7120]
 gi|17132902|dbj|BAB75467.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701505|gb|ABA21181.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 240

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 74/257 (28%), Gaps = 33/257 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +++I+L  + +     +      +  +  +            +               
Sbjct: 1   MSEISIILIEDHDLTRMGLRAALQANTGIKVIGEAANATQGLKLLETA------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R      + +  +       L   + HT    +   A
Sbjct: 49  ---KPDVAVVDIGLPDMDGIELTRKF---RRYQAESGQTHTKILILTMDHTEDAVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-- 182
              + Y      ++R+   +   F     I       +                      
Sbjct: 103 AGADSYYMKETSISRLTEAIQATFGGNSWIDPAIANVVLQKMRQGIPGESQSSDKPKTVK 162

Query: 183 -------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                         + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K  
Sbjct: 163 IEALPSEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLC 222

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 223 ADDRTQAAVRALRSGLV 239


>gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
 gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
          Length = 194

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 62/207 (29%), Gaps = 20/207 (9%)

Query: 38  PLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   +        + E   G+   +           LD  +      D ++ +     D
Sbjct: 4   GIRQLLELDSSFEVVAEANCGSDAIIEAAKCQPDVILLDLNMKGMTGLDTLKALRNEGVD 63

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +   V     +         + Y     +   +   +       ++   
Sbjct: 64  --------ARIIVLTVSDARNDVYAMIDAGADGYLLKDSEPEILLENIRHAAKGEKVFSN 115

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +            A    S         ELT RE++ L  ++ G ++ ++A  L IS  T
Sbjct: 116 E-----------VAQYLSSRHEQVNPFAELTERELDVLQEVARGMSNKQVAFELHISEET 164

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V  +I +++RK   ++R  A    + N
Sbjct: 165 VKVHIRNLLRKLNVRSRVAATIMFLEN 191


>gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
 gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans
           C9-1]
          Length = 209

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 64/241 (26%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +   + +++  +       +  L      L  +   +                      
Sbjct: 1   MQQPALTLMIVDDHPLMRRGIRQLLALDPRLEVIAEANNGTEALAEARRQ---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      D ++ +                 L   V     +    
Sbjct: 51  -----EPDIILLDLNMKGMSGLDTLKALRHEGIS--------SRILVLTVSDARSDIFAM 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   ++      ++                     +       
Sbjct: 98  VDAGADGYLLKDSEPEILLGHILQASQGEKVFSEGVAR-----------YLANRQHSADP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LTGRE + L  ++ G ++ EIA  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 LRQLTGRECDVLQEVARGLSNKEIAANLHISEETVKVHIRNLLRKLDVRSRVAATVMWLE 206

Query: 243 N 243
           +
Sbjct: 207 S 207


>gi|293402353|ref|ZP_06646490.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304200|gb|EFE45452.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 219

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 74/238 (31%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E     +  + + ++    +  +         +                  
Sbjct: 2   IKILIADDQELIRESLKIILSTNNEFEVIDTVGSGKEVVESIRR---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+      D+          + Y  ++    +    F       +      
Sbjct: 46  ----HIPDIILMDVRMPDMDGVQCTKFVKEVYPEIK---VIVLTTFDDDEYIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + Y      +  +   +  +   G I   +   ++  + +  A      +    +D   L
Sbjct: 99  SGYLLKGVSLDELTSAIKTVLQGGAIFNPNVASKVTKIFSEMAKNNIVAERIHDEDLPNL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  E + +  +S+G ++ EIA IL  +  T+ NY++ I+ K   + R+    + +   
Sbjct: 159 SDTEWKIIQQVSQGLSNKEIAEILKFTEGTIRNYLSVILDKLQLRDRTQLAIWYIHRG 216


>gi|154707512|ref|YP_001424377.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|154356798|gb|ABS78260.1| response regulator [Coxiella burnetii Dugway 5J108-111]
          Length = 214

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D L     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHLLIRQAMRLMLEEIQGVRIVGEAGTGEEGLKLRRDKEPDVIILDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R     +  +    ++                +         + + + D   +   +
Sbjct: 64  ELSR-----KLLRRDATIKILMVTGM---EGDLLPMRLLEVGVRGFITKSSDTTELEQAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++   R I       + L         K+         +L+ RE+E L  +++GK ++
Sbjct: 116 RAVYKGQRYISSAIANRLAL--------SKTTTAATSPFKKLSDREMEVLLLLAKGKKAE 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L I+  TVN++   I  K   K     I  AV+  +V
Sbjct: 168 VIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGLV 209


>gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 222

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D L   + +   +  +  M  ++   G     LV          D  +     F+
Sbjct: 5   LLVVDDDLGTRLSISDYLEMSGYM-VISATNGQEALELVEKHQPHLIVTDIAMPEMDGFE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+ +            +    +F     +  E I       + Y    F++  + + + 
Sbjct: 64  LVKRVRSQ------PGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIR 117

Query: 146 LLFPKGRIILRDRLWEI-GLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKT 202
            L  + ++I  +    I   L+ + +  +K +        +  LT RE + L  ++EG +
Sbjct: 118 ALLERSQLIEAEWRSRINEPLSNHTSPRYKRHHFHSLSTTNIHLTEREQQVLNLLTEGLS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L +S  TV  Y++S++RKT +  R+  + +A+ N+++
Sbjct: 178 NVKIGNSLHLSSRTVEKYVSSLLRKTDSSNRAALVRFALENDLI 221


>gi|183983463|ref|YP_001851754.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
 gi|183176789|gb|ACC41899.1| two-component transcriptional regulatory protein [Mycobacterium
           marinum M]
          Length = 217

 Score =  111 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 67/237 (28%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L      L  +           R+ AL               
Sbjct: 2   VKVFLVDDHEVVRRGLVDLLGSDPDLEIIGEAGSVSEAMARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +           L     L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRDLLSD--------LPELRCLMLTSFTSDEAMLEAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +           +           LT
Sbjct: 99  SGYVVKDIKGMELARAIKDVGAGKSLLDNRAAAAL-------MAKLRGGAEQKDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A R  
Sbjct: 152 EQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASRLG 208


>gi|197284103|ref|YP_002149975.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227358025|ref|ZP_03842367.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|194681590|emb|CAR40570.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227161760|gb|EEI46792.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 210

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + +          A+++ L+  ++            G   +  +  D      +D  + 
Sbjct: 4   VALIDDHIVVRSGFAQLLMLEPDINIVGE-----YANGQEAWPYLLNDNIDVAVMDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L   +     D           +   ++ T     +      + Y +       
Sbjct: 59  GESGLQLQSRLKQKRPDF--------RTIILSIYDTPAFVQSALDSGAHGYLTKRCGPQE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  ++  G  +  D +  +           +           LT RE E    + +
Sbjct: 111 LVQAVRAVYQGGCYLCADAMKAL-----------RQTPEKEDALHSLTPREREIFNLLVQ 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G     IAV L +S  TV+ + A+I+ K   +T    + +A+ N ++
Sbjct: 160 GINVKAIAVQLNLSHKTVHVHRANILGKLNCETTIDLVHFALNNQLI 206


>gi|163751528|ref|ZP_02158750.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica
           KT99]
 gi|161328536|gb|EDP99689.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica
           KT99]
          Length = 209

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 31/231 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L T              +     +                 + 
Sbjct: 6   SVLVVDDHPLLRRGICQLITSDSDFTLFGEAGSGLDALSAIEE---------------NE 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     + I       +
Sbjct: 51  PDIVLLDLNMKGMTGLDTLNSLRQEGVT--------SRIVILTVSDAKQDVIRLVRAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       R+I       +           K           LT 
Sbjct: 103 GYLLKDTEPDLLLEKLKQAMQGHRVISESVEDYLY--------ELKDAIDEKDWIDNLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE++ L  +++G ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 155 RELQILQLVAQGMSNRTISEQLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 232

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 78/248 (31%), Gaps = 31/248 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              ++L  ++      V       D        +   +W                 L+  
Sbjct: 5   PAKVLLVDDEPGVRESVQAYLQYGDEFEVRTASNANEAW----------------DLLNQ 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           ++ +    D ++     +  ++ +    + +   V+      F        + I      
Sbjct: 49  EIPELVISDIMMPQVDGYQFLKKLREDARFQTIPVV------FLTARGMTSDRIQGYNAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLL--FPKGRIILRDRLWEIGLLAAYQANMFKSYD------- 177
            + Y S  FD   +   +  L    +  +        +  +A     + +          
Sbjct: 103 CDAYLSKPFDPEELEALIKSLIERRRQSLQATSENARLEEIARDIRELKQQVGQQNTFTT 162

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 163 TPPPIKVDLTPREQSVLDLVAEGLMNKEIASRLETSVRNVEKYVSRLFSKTGTNSRTELV 222

Query: 238 AYAVRNNI 245
            +A+++ +
Sbjct: 223 RFALKHGL 230


>gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 226

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 73/240 (30%), Gaps = 22/240 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  +     S V     R D           V       ++ E         V  
Sbjct: 9   PIRVYLVDDHALFRSGVRAELDRGD------GRSPAVEVIGEAGSVDEA-----VAGVAH 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +++R    +  +           L   V     + I+     
Sbjct: 58  LEPDVVLLDVHLPGGGGAEILRRTRAAGTE--------SVFLALSVSDAAEDVISVIRSG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y + T     +   +  +     +         G +    ++   +      +  +L
Sbjct: 110 ARGYVTKTISGRDLADAVRRVRVGDAVFSP---RLAGFVLDAFSDRPGAAPPVDPEVDQL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ++ G    EIA  L IS  TV  +++S++RKT T  R     +A    +V
Sbjct: 167 TKRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVLRKTQTSNRHELSRWASDRRLV 226


>gi|22126270|ref|NP_669693.1| fimbrial Z protein; signal transducer [Yersinia pestis KIM 10]
 gi|45441481|ref|NP_993020.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596249|ref|YP_070440.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108807299|ref|YP_651215.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145598492|ref|YP_001162568.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149366138|ref|ZP_01888173.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|153947114|ref|YP_001401133.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165927181|ref|ZP_02223013.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939732|ref|ZP_02228274.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009343|ref|ZP_02230241.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210811|ref|ZP_02236846.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401017|ref|ZP_02306520.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420230|ref|ZP_02311983.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466513|ref|ZP_02331217.1| DNA-binding response regulator, LuxR family protein [Yersinia
           pestis FV-1]
 gi|170024496|ref|YP_001721001.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186895283|ref|YP_001872395.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929039|ref|YP_002346914.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229894596|ref|ZP_04509777.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229897323|ref|ZP_04512479.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|21959244|gb|AAM85944.1|AE013841_9 fimbrial Z protein; probable signal transducer [Yersinia pestis KIM
           10]
 gi|4106621|emb|CAA21376.1| unnamed protein product [Yersinia pestis]
 gi|45436342|gb|AAS61897.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51589531|emb|CAH21161.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108779212|gb|ABG13270.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|115347650|emb|CAL20563.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|145210188|gb|ABP39595.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149292551|gb|EDM42625.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|152958609|gb|ABS46070.1| DNA-binding response regulator, LuxR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|165912320|gb|EDR30955.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920849|gb|EDR38097.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991898|gb|EDR44199.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207991|gb|EDR52471.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961925|gb|EDR57946.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049406|gb|EDR60814.1| DNA-binding response regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|169751030|gb|ACA68548.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186698309|gb|ACC88938.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229693660|gb|EEO83709.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229702351|gb|EEO90369.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262361879|gb|ACY58600.1| putative two-component response regulator [Yersinia pestis D106004]
 gi|262365982|gb|ACY62539.1| putative two-component response regulator [Yersinia pestis D182038]
          Length = 210

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S   + +           ++                 + 
Sbjct: 4   SVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLK---------------NNP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFT--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|238764987|ref|ZP_04625924.1| Response regulator uvrY [Yersinia kristensenii ATCC 33638]
 gi|238696756|gb|EEP89536.1| Response regulator uvrY [Yersinia kristensenii ATCC 33638]
          Length = 218

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +     + C         +                
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVADEMQCGEDAVKWCRS---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++       +    A  +  ++         +   +    P          
Sbjct: 46  ----HIVDIVLMDMNMPGIGGLEATRKILRFSP---DTKVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMALGQLE--------PPTETPFSCLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 151 ERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 189

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     M  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDMEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKTLYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|213693023|ref|YP_002323609.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524484|gb|ACJ53231.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459203|dbj|BAJ69824.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 231

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 70/249 (28%), Gaps = 28/249 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + +  + E   + V            +  L  +     +   +          +
Sbjct: 5   ETAKIRVAVVDDHEMFRAGV------------IATLRDSFDIVGQAADV-----PGSVAM 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +     Q   LD  V           +A S       V    +    P      +     
Sbjct: 48  IAQTKPQVVLLDVHVPGGEGGGGAEILAKSRSYSPTTVFLALSVSDAP-----QDVGAVI 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV----- 178
                 Y + T   A +   +  +     +        +                     
Sbjct: 103 RAGAQGYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSAFQGVPAAGSDGGADGAAR 162

Query: 179 -HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            H  +   L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+   
Sbjct: 163 AHDEELDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELT 222

Query: 238 AYAVRNNIV 246
            +A    IV
Sbjct: 223 RWAADRRIV 231


>gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42]
 gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42]
          Length = 211

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 23/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + L  +I  +   + T          G +   L          +D  + 
Sbjct: 4   VLIADDHLVVREGLKLLIETNDHYTITGEAEN-----GKTAVRLAEELKPDVILMDLYMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + ++ +                 +    ++     I       N Y         
Sbjct: 59  EMSGLEAIKQIKEHSDVPI---------IILTTYNEDHLMIEGIESGANGYLLKDTSSET 109

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        ++  D L                 +     + +LT +E+  L  +++
Sbjct: 110 LFHTMDAAVRGEVLLQPDILRRF---------REMKMERANANETQLTDKEIIVLEAVAQ 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S  IA  LGIS  TV   + SI  K    +R+ A+  A++  I+
Sbjct: 161 GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGIL 207


>gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 220

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 10/219 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           + A ++ +D      + + A  E  G     +   +   +L ++ + D +  +D     V
Sbjct: 1   MAAHLLLVDDDPGIRLALQAYLEDEGFGVTTARNAIEGLELAEKHQPDLV-ITDIMMPQV 59

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 +K +     +    +F        + I       + Y     D   +   +  L
Sbjct: 60  DGYRFLQKLRALPRFRYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNL 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +     R    EI  L +   +           D +LT RE E L  +  G  + EIA
Sbjct: 120 LDR----SRQVQSEIVSLVSELNHRPAPV-AIEAIDLDLTPREQEVLLLVYAGLMNKEIA 174

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L  S   V  Y++ ++ KT T +R+  + +A+ + +V
Sbjct: 175 GRLERSTRNVEKYVSRLLAKTGTSSRTELVRFALEHGLV 213


>gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 214

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 66/240 (27%), Gaps = 36/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              +V+  +       +  +    D +     L        R+ AL              
Sbjct: 4   PTRVVIVDDHPLVAEGIEAILESYDDIEVAATLSGGQEVIDRLEALA------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +                 L   +  T           
Sbjct: 51  --PDVILMDLNMPGLNGLSATEMILEQR--------PETRILVLSMHDTPEYISNALGHG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         I+  +  +    R +       +               V  G   +L
Sbjct: 101 AMGYVLKDVPTDEIKRAIDAVMSGERYLCTGAEGAL-------------RPVMSGGREQL 147

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 148 TNREQTVLLQLAQGKSNKEVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|21223737|ref|NP_629516.1| chitinase two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785170|ref|ZP_05523601.1| chitinase two-component response regulator [Streptomyces lividans
           TK24]
 gi|289769063|ref|ZP_06528441.1| response-regulator [Streptomyces lividans TK24]
 gi|4323625|gb|AAD16452.1| response-regulator [Streptomyces coelicolor A3(2)]
 gi|8568799|emb|CAB94548.1| chitinase two-component response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289699262|gb|EFD66691.1| response-regulator [Streptomyces lividans TK24]
          Length = 213

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 61/228 (26%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 2   IRVLVAEDQSAVRAGLVLILGSAPDIEVVGEA-----ADGEQAVALARELRPDLVLMDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +   +             L    F                +     D 
Sbjct: 57  MPRMDGVSATRIVVGEQLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNTDA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+       +  +A + A   +          ELT RE E L+ +
Sbjct: 108 RDLLAAVRTVAGGEGIVAPAVTRRL--IAEFAAKPVREPTADPAVLRELTRREREVLSCL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++  +A  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 166 GEGLSNAAVAERLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI 213


>gi|254522250|ref|ZP_05134305.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219719841|gb|EED38366.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 217

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 27/230 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D LA ++     +             G       +        +D 
Sbjct: 7   PIRVLVVDDHPLLRDGLAALLGAQADLQLLGEA-----ADGEEAIACYQRLHPDVVLMDL 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + +  +   +         R   +    +      +       + Y      
Sbjct: 62  QMPRLDGVEAIVRIRALD--------PRARIIVLTTYRGDVRAVRALQAGASAYLLKDML 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++    R  +   +     +AA+                 L+ RE E L  
Sbjct: 114 RHELVDTIRMVAGGRRAPIPPAVA--ASIAAHVVED------------RLSPRETEVLRH 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++  I   + IS  TV  ++ S+M K     R+ A+  A+R  I+
Sbjct: 160 VASGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRRGII 209


>gi|309791797|ref|ZP_07686284.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308226119|gb|EFO79860.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 209

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 65/241 (26%), Gaps = 34/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ I+L  +     S +    + +  L  +   +                G    +   
Sbjct: 3   DKIRIMLVDDHAVVRSGLGAFLSVNPDLELVGEAED---------------GEQAIVQAA 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D ++           +           +Q    +    F            
Sbjct: 48  IVKPDVILMDLMMPVMDGVAATAAIKKQH-----PGIQI---IALTSFQEEELVQNVLKA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +         +  +    +                   +   
Sbjct: 100 GAIGYLMKNVSARELAAAIKAAKAGKPTLAPEATQALV-----------HASQQAQETEV 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  + EG  + EIA  L +S +TV  +I++I+ K     R  A+  A++  +
Sbjct: 149 LTERERDVLKLLVEGLNNAEIAERLVVSLSTVKYHISNILMKLGVDNRVAAVTKAIQKKM 208

Query: 246 V 246
           V
Sbjct: 209 V 209


>gi|297154431|gb|ADI04143.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 213

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 51/219 (23%), Gaps = 11/219 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       +   +     +  +     G +              LD  +       
Sbjct: 2   LVADDEPLIRAGIRTVLESAPDIEVVAVAEHGRAAVSEAVAHRVDVALLDINMPLLDGLS 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +                 +    F   P  +         +         +   + 
Sbjct: 62  ALEELRRQA--------PALRTVVLTAFGAEPNVLQALQSGAAGFVLKNCTPDELIRAVR 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   +       +  L    A   +           LT RE + L  ++EG ++ E
Sbjct: 114 AAHGGEAYLSPAVTRPVLNLITPVAARRRREAAER--LTALTERESQVLRLVAEGMSNAE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I   L +S  T+  Y++ ++ K     R  A        
Sbjct: 172 IGRELHMSEKTIKTYVSRVLAKLGCSNRVQAALLVRDAG 210


>gi|123442115|ref|YP_001006098.1| response regulator [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|332161393|ref|YP_004297970.1| response regulator [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|122089076|emb|CAL11901.1| response regulator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605328|emb|CBY26826.1| bara-associated response regulator UvrY (= GacA = SirA) [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665623|gb|ADZ42267.1| response regulator [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 218

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +     + C                          
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVADEMQCGEDAVKWCR----------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++       +    A  +  ++         +   +    P          
Sbjct: 45  ---NHIVDIVLMDMNMPGIGGLEATRKILRFSP---DTKVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMALGQLE--------PPTETPFSCLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 151 ERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|121592864|ref|YP_984760.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222109644|ref|YP_002551908.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120604944|gb|ABM40684.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221729088|gb|ACM31908.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 223

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 10/219 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D       L   +S    +  + E   A     L+         LD+ +    
Sbjct: 5   TTLFLIDDHTLLRRGLVALLSQQPDLRVVGEAGDAAEALRLLPALRPDVILLDNHLPGVR 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D +  +  +         Q    L   V     +           Y   T D   +  
Sbjct: 65  GVDAIAGLREAS--------QGSRVLMLTVSEDGQDLAAALRNGAQGYLLKTIDGDLLAQ 116

Query: 143 GLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            +        ++  + + ++     +  A   +           L+ RE + L  I+ G 
Sbjct: 117 AIRRAARGEPVVSPEMMGKLVAAFQSQGAPTPEPLPEEEEPASVLSPREEDVLREIARGL 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ EIA  L I+  TV  ++  I+RK    +R  A  YA
Sbjct: 177 SNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAVYA 215


>gi|52842852|ref|YP_096651.1| response regulator GacA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629963|gb|AAU28704.1| response regulator GacA [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 225

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + +   +     +  + +   G      V+        LD  +     +
Sbjct: 10  VLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGW 69

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +  +  +           +      + P            Y +       +   +
Sbjct: 70  EVTRRLKKTNPNI--------KVIAVTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + +  +   ++ + +          +        L+ RE++ +  I+ G    
Sbjct: 122 RKVAKGEKYLSAEIAQKMAINSLQ--------ESQDSPFDLLSEREMQVMLMITSGMNVQ 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  T+N Y   +  K   K        A+++ I+
Sbjct: 174 DIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRII 215


>gi|319945743|ref|ZP_08019994.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748103|gb|EFW00346.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 228

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +              D         + + D ++       +   
Sbjct: 4   VMIADDQALIRESLQIILSAHQDIQVTSAVADGHEVLERIPQDRPDVVLMDIRMPKMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           MA  E  + +  ++    +    F              + Y         +   + +++ 
Sbjct: 64  MATKEVKERFPEVKI---IILTTFDDDDFIFRALKYGASGYLLKGASTEELYQAIQIVYH 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  + +  A    +  V      +L+  E   +  +  G+++ EIA  
Sbjct: 121 GGAMINPNIASKVFQIFSQMAQSNYTISVSEEYVSDLSLTEWRIIQQVGFGESNKEIAAK 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  T+ NY+++I+ K   + R+    ++V+  
Sbjct: 181 LFLSEGTIRNYLSTILSKLNLRDRTQLAIWSVQKG 215


>gi|307545446|ref|YP_003897925.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Halomonas elongata DSM 2581]
 gi|307217470|emb|CBV42740.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Halomonas elongata DSM 2581]
          Length = 219

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 13/188 (6%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A    L          LD  +      + ++ +  +E             +   V     
Sbjct: 43  AEGLRLADERDPDLILLDLNMPDMDGIETLKRLRANEF--------AGRIVIFTVSDHEE 94

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + +       + Y     D   +   L        +I       +           +   
Sbjct: 95  DVVAALHAGADGYLLKDMDPDDMVHQLRQAALGRMVISDSLASLLAEAL-----RNQKGQ 149

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E L  ++ G ++  IA  L I+  TV  ++  +++K   ++R  A 
Sbjct: 150 STAPDIHSLTQREREILRELAAGLSNKLIARRLDITEGTVKVHVKHLLKKLNLRSRVEAA 209

Query: 238 AYAVRNNI 245
            +AV+  I
Sbjct: 210 VWAVQEGI 217


>gi|282862429|ref|ZP_06271491.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562768|gb|EFB68308.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 247

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 62/236 (26%), Gaps = 21/236 (8%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V + +  + E     V  L      +  +           R+ A+            
Sbjct: 18  ASPVRVFILDDHEVVRRGVRDLLEADGGIEVVGEAGDAREALARVPAVA----------- 66

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  +  D   D        E       L          F           
Sbjct: 67  ----PQVAVLDVRLGDDRGGDHAGIEVCRELRARMPGLACLM---LTSFDDDEALFDAIM 119

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     + A +   +  +     ++       +            +      +  
Sbjct: 120 AGAAGYVLKQINGADLVAAVHTVASGTSMLDPRTTARVMARLRGPQQPPAAEASELDR-- 177

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            LT RE + L  I EG T+ EIA  L ++  TV N I++I+ K     R  A   A
Sbjct: 178 -LTPRERQILDLIGEGLTNREIAERLFLAEKTVKNRISAILAKLGVGRRIQAAMLA 232


>gi|308177612|ref|YP_003917018.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307745075|emb|CBT76047.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 205

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + +  L    + ++ +            + A               +
Sbjct: 2   IRILLVDDHPIVRTGLRALFENYEDISVIGEASSGEEAVQFVKA---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +  +  A   +      +   T      F    E +       
Sbjct: 47  PVDVVLCDLRL--GAGMNGAQTTAAIRQLSKPPFVLILTT-----FDKDSEVLACIEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +        ++  +    +              +       ELT
Sbjct: 100 AGYLLKDVSAQTIVDSIRQAALGNVVLAPEMTQRV-------------VEGMRRPKVELT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G  + +IA  L +S  TV  ++  I  K    TR+ AI  A    ++
Sbjct: 147 KREKDVLVQLATGAANKQIAKALFVSEATVKTHLVHIFDKLQATTRTDAINKAQDLGLL 205


>gi|209546605|ref|YP_002278523.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537849|gb|ACI57783.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 35/242 (14%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ ++L          +  +    D +                    E  G +    
Sbjct: 3   ERPKIRVLLIDNHPLVLDGLKAVLETFDHI--------------------EVAGTAGLAQ 42

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              D+ ++ +   ++       L    A+      +  ++           +     +  
Sbjct: 43  TGLDIARQIQPQVVLMDINMPKLSGIDAIELFRNEFPEIRVVMLSM---HDSREYISSSV 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   +  +   G          +              +      
Sbjct: 100 MHGAAGYVLKDVSTDEIVAAIETVADGGTYFSSGVFDALM------------GERAEEGS 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ +
Sbjct: 148 DPLTPREHDILGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIRYALDH 207

Query: 244 NI 245
            I
Sbjct: 208 GI 209


>gi|86739019|ref|YP_479419.1| two component LuxR family transcriptional regulator [Frankia sp.
           CcI3]
 gi|86565881|gb|ABD09690.1| two component transcriptional regulator, LuxR family [Frankia sp.
           CcI3]
          Length = 214

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 72/229 (31%), Gaps = 16/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +     P     L  +I  +  +             G +   LVR        LD  
Sbjct: 2   IRVAVADDQPLVRLGLRVLIETEDDLELVGEAED-----GRAAVELVRATRPDVVLLDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +           L     +    F           G  + +     + 
Sbjct: 57  MPVLDGLAALRTIVE------DPDLAATRVVMVTTFELDEYVFEALRGGASGFVLKDTEA 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++       +    A +     + D+       LT RE E ++ +
Sbjct: 111 ADLLRAIRVVAAGESLLSPTVTRLVIETFARRPAAVAAPDLR-----GLTVREREVMSLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++DEIA  L IS  T   +++ +M K A + R+     A +  +V
Sbjct: 166 GHGLSNDEIAARLVISPATARTHVSRVMVKLAARDRAQLAVLAHQAGLV 214


>gi|226228812|ref|YP_002762918.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092003|dbj|BAH40448.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 207

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 70/232 (30%), Gaps = 28/232 (12%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            +  R   V   P   D +A +I     +    +  +     G       +        +
Sbjct: 2   AEPIRVLIVDDHPLLRDGIAVLIANRDDIVVVGQAES-----GTEAIAAHQRLCPDVTLM 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D ++ +             +   +    +                Y    
Sbjct: 57  DLQLPDMDGVDAIKAIRSHA--------PQARIVVLTTYSGDARAQKAMQAGARAYTLKN 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +F   + +  +   ++                    +  LT RE++ L
Sbjct: 109 HVRRDLLDTIRKVFAGYKYVDPEVAGQMA---------------EHSGEEGLTSRELQIL 153

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++  I   L IS +TV  ++++I+ K     R+ A+  A+R  ++
Sbjct: 154 HLVAGGLSNKRITSSLAISEDTVKGHVSNILSKLDANDRTHAVTLAIRRGVI 205


>gi|170781406|ref|YP_001709738.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155974|emb|CAQ01108.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 224

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 67/230 (29%), Gaps = 19/230 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + V   P     LA ++     +    +        G +   L   +      +D 
Sbjct: 5   RIRVAVVDDHPVVRAGLAALLASADDIDVVGQA-----ADGEAAVDLALGERPDVVLMDL 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +           ++         + T    +T      + Y      
Sbjct: 60  RMPGLDGVGATARIREE-----APGVRVL---VLTTYETDASILTAIEAGASGYLLKAAP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I  G+  +      +       +         + +      G    L+ RE + L  
Sbjct: 112 EEEILAGVRAVARGEVALAPGIAAAL------VRQVARPAAEPAGPTPTLSPRETQVLAL 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G+T+  IA+ L ++  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 166 VAGGRTNARIALELHVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215


>gi|186470967|ref|YP_001862285.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197276|gb|ACC75239.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 231

 Score =  111 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 71/244 (29%), Gaps = 31/244 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L +  +    +           R                   
Sbjct: 7   IRILVVDDHTLFRRGIIALLSTDERFVVVGEAGDAGEACRR---------------ANET 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D++  +A            +   L   V     +      G  
Sbjct: 52  QPDVILLDNHLPGVRGIDVLPGLAELA--------PQARVLMLTVSEDEQDLAAALRGGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY--------QANMFKSYDVH 179
             Y   T D + +   ++ +      I  +   ++               A+        
Sbjct: 104 RGYLLKTVDSSAMADAIVRIMAGESTISPEMTGKLVSAFQALQPGEVPPAASPSVLAPAV 163

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ R+ E L  I+ G+T+ EIA  L I+  TV  ++  +++K    +R  A  Y
Sbjct: 164 PDPIESLSARQEEILAHIARGETNKEIARALNIAETTVKIHVQQVLKKLKLASRVQAATY 223

Query: 240 AVRN 243
           AV  
Sbjct: 224 AVMR 227


>gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 15/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           ++ R       P     L  M+ ++  +             G++   L+         +D
Sbjct: 3   EKIRVVIADDHPIVRTGLRLMLGMEEGIDLVGEA-----ADGSAALHLISSLEPDVVLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + +  + +               +    +      +         Y     
Sbjct: 58  LRMPVMDGLEAIERIRVQW--------PHIAIIVLTTYDEDDLMLRSLQAGVRGYLLKES 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  +   +        +   + +  I  L             H   DF LT RE E L 
Sbjct: 110 SLETVLQAIESAARGDMLQQPELMKRI--LDHATQKRSAPSAAHENSDFHLTAREREVLA 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I+ G+   E+   LGI+R TV +Y+ SI  K    +R+ A+A A+ + ++
Sbjct: 168 GIASGERGKEVGARLGITRRTVESYLNSIYTKLNVDSRAAAVAIAIEHGLL 218


>gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 65/233 (27%), Gaps = 25/233 (10%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           RE   R   V   P   D L  +      +             G       R        
Sbjct: 2   REHPIRLMIVDDHPVVRDGLRGIFHGVPDIEVVAEA-----ADGHQALAQTRATRPDVVL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +        +  +     + +         +    + T  +     A     Y   
Sbjct: 57  MDLRMPGLDGVGAIERLRSEHPEVH--------VIVLTTYDTDADVSRALAAGVAGYLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 ++  +      GRI+ +    ++                   +    + RE+E 
Sbjct: 109 DAPREELQAAVRTAAAGGRILAQRITSQLL------------DGFGRKRRASPSPRELEV 156

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+ G  + E+A  L IS  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 157 LRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209


>gi|123442878|ref|YP_001006854.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332161274|ref|YP_004297851.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122089839|emb|CAL12695.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|325665504|gb|ADZ42148.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330864132|emb|CBX74201.1| fimbriae Z protein [Yersinia enterocolitica W22703]
          Length = 210

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L ++S+  + +            +                 + 
Sbjct: 4   SVMIVDDHPAIRVAIRALLSQSNEFSTIYESVDGSEALETLK---------------NNT 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +   F L++ +                 LF    +     +       N
Sbjct: 49  VDLVIIDIELPNFDGFSLLKKLQQRGFS--------GKSLFLSAKNEQVFAVRALQAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ I      +         +    +  LA   ++          +   L+ 
Sbjct: 101 GFISKNKDISEILFAAQNVLRGYSFFPSET---LTQLAGQPSSH-----DPVNRARLLSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +      YA  +N+V
Sbjct: 153 REINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHTHNLV 210


>gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
 gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM
           3645]
          Length = 210

 Score =  111 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+V+  + E   S ++ L   ++ ++ +                    G+         
Sbjct: 3   INVVVADDHEVVRSGLASLLKGTE-ISIVDEAST---------------GSEAVEKALAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +     +           +    +          A   
Sbjct: 47  QPDVVLMDIRMPDTDGLAALEKIKKESPN--------TRVVMLSTYDNPTYIARGVALGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   +        I     +                       D  LT
Sbjct: 99  HDYVLKGSSRETIVTAIENAATDSPIAEDSLMNR-------VRGAMAKRQEAKHSDIPLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  ++ G ++ EI   L IS  TV  ++ +I+RK     R+ A  +AVR  +V
Sbjct: 152 NREMQVLRHLALGLSNREIGRSLTISIETVKEHVQNILRKIDVTDRTQAAVWAVRRGLV 210


>gi|239929732|ref|ZP_04686685.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438058|ref|ZP_06577448.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340953|gb|EFE67909.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 221

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 65/241 (26%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +   S     +                    G     L R  
Sbjct: 2   IRVLLADDEAMVRAGVRAILGSSGETEVVAEAGD---------------GREAVELARAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +           +          F           G  
Sbjct: 47  RPDVALLDIRMPRLDGLAAAEEIVR--------AVPGTAVAMLTTFSERTYVARALGGGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             +   + D   +  G+  +      +       +  GL  A+             +   
Sbjct: 99  TGFLLKSGDPYELIAGVRAVAGGAAFLSPTVARYVIEGLGGAHGTGRLTREAEARARVAV 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  +  G ++ EIA  L +   TV  Y+++++ +   + R  A   A    +
Sbjct: 159 LSPREREVLGLVGAGLSNPEIAARLHLVEGTVKAYVSAVLDRLGVRNRVQAAIVAHEAGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|256851763|ref|ZP_05557151.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260661520|ref|ZP_05862432.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|282933593|ref|ZP_06338963.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|297205385|ref|ZP_06922781.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615721|gb|EEU20910.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260547577|gb|EEX23555.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|281302336|gb|EFA94568.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|297149963|gb|EFH30260.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 223

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 76/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   S +  +   +        +                           D
Sbjct: 2   IKVLIADDQELIRSSIQIILEANPKFKVTATVADGEEV--------------------LD 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             ++++ D I+       +   +        Y  ++    +    F       +      
Sbjct: 42  AIKKERPDVILMDVRMPKMDGTVCTKYVKSKYPEIK---VIILTTFDDDDFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   +  ++  G +I  +   ++  L +  A    +  V   +    +
Sbjct: 99  SGYLLKGVSNDQLYQAIETVYQGGAMINPNIAEKVFKLFSKMAQSNYAIQVDQTESKHFS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E   +  +  G ++ EI+  L +S  TV NYI+SI+ +   + R+    +AV+  
Sbjct: 159 KNEWRVIQQVGLGLSNKEISAKLYLSEGTVRNYISSILSQLDLRDRTQLAIWAVQTG 215


>gi|29827823|ref|NP_822457.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604924|dbj|BAC68992.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 226

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 12/224 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           V  +    D           +     +  +    G       +        LD  +    
Sbjct: 6   VIRVLVVDDEALIRTGFQHILDTADDIEVVAAVPGGQALQTAQEIRPDVVLLDIRMPDV- 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D +  +A   +  +  V+          F       T        +     D   +  
Sbjct: 65  --DGLTLLACLRRLPHPPVVA-----MLTTFDMDEYVATALRSGAAGFLLKDTDPEGLPF 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  L   G ++       +              +        LT RE   L  I+EG +
Sbjct: 118 LVRTLADGGTVLASKVTRTV----VDGYLNAGPQEPAARSLAALTDRERAVLVLIAEGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   + +S  TV +++++I+ K     R  A   A R  ++
Sbjct: 174 NADIGTRMHLSTGTVKDHVSAILTKLKVDGRVQAALLAERAGLL 217


>gi|238792683|ref|ZP_04636315.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
 gi|238728039|gb|EEQ19561.1| Two component transcriptional regulator, LuxR family [Yersinia
           intermedia ATCC 29909]
          Length = 209

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 22/219 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--LDSIVSSDWPFDLV 87
            D +         +S    +  + E  G++                +D  +  +    L+
Sbjct: 8   DDHVVVRSGFAQLLSLEKDIRIIGE-YGSAAQAWAELPTIDVHVAVMDISMPDESGLSLL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +  +  +           +   ++ T     +      + Y +       +   L  +
Sbjct: 67  KRLRQTMPNF--------RAIILSIYDTTAFVQSAMDAGASGYLTKRCGPDELVQALRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  D L  +           +    H  +   LT RE E    +  G +   IA
Sbjct: 119 SGGGLYLCADALRAL-----------RYMPQHPPQLAILTPREKEVFQLLINGVSVKSIA 167

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 168 DQLSLSHKTVHVHRANILGKLHCETTVELVHFALQHQLL 206


>gi|205353364|ref|YP_002227165.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273145|emb|CAR38106.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628455|gb|EGE34798.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 207

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 31/230 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +       +  L         +                    GAS   L      
Sbjct: 1   MLIVDDHPLMRRGIRQLLELDPAFHVVAEAGD---------------GASAIDLANRIEP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      D +  +                 +   V  +  +         + 
Sbjct: 46  DLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALIDAGADG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     D   +  G+      G++                    + +         LT R
Sbjct: 98  YLLKDSDPEVLLEGIRKGANGGKVFSDRV--------NEYLRERERFGAQEDPFSILTER 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 150 ELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 199


>gi|170782617|ref|YP_001710951.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157187|emb|CAQ02370.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 232

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 64/239 (26%), Gaps = 9/239 (3%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     +    +   +  +  +            +  L   V     + VR  
Sbjct: 2   IRVVLVDDQSIVRAGFRVVLETAGGIEVVGEASGGREAVELVRRLAPDV---VVMDVRMP 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                +    ++        +    +                   F              
Sbjct: 59  GGDGIEATRAITGADAHADAKADTPARAPGDDPQGPAVLVATT--FDLDEYVFGALEAGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     +       +  L      +       +      +    +           LT
Sbjct: 117 RGFVLKDAEPEEFIQAVRALAEGRAALDGVTTRRV----MDEFTRRRVASAVHPGVEVLT 172

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  + +G ++DEI   L I  +TV +++  IM K  T+ R   + +  R+ ++
Sbjct: 173 PREQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 231


>gi|302525732|ref|ZP_07278074.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434627|gb|EFL06443.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 67/236 (28%), Gaps = 27/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     + ++ +   ++ +  +           +  AL               
Sbjct: 3   IRVLVADDHGAIRAGLALILGNAEGIEVVGEAADGEVALRQARAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +                 L    F              
Sbjct: 48  RPDVVLMDVRMPGTDGITATRQLIAEGL---------AEVLVLTTFDLDEYVHAALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + +  R+   + L+     ++       +    A  A+   +         +LT
Sbjct: 99  AGFLLKSVEAPRLIEAVRLVAAGEGVLAPQVTKRLI---AAFASTPAAPSPAPTGLADLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  +  G ++ EI   L I   TV  +++ ++ K   ++R  A   A  +
Sbjct: 156 EREREVLGCLGAGLSNAEIGARLYIGEATVKTHVSRVLAKLGLRSRVQAAILAQDH 211


>gi|261345362|ref|ZP_05973006.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM
           4541]
 gi|282566405|gb|EFB71940.1| DNA-binding response regulator UhpA [Providencia rustigianii DSM
           4541]
          Length = 208

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 24/226 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+  +S   +  +  E         +         +D  +  
Sbjct: 5   ALIDDHIVVRSGFAQLLTLEPDISIVGQYASAQEAWPH-----LISLDIDVAIMDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +   + D           +   ++ T     +      + Y +       +
Sbjct: 60  ESGLQLLTRLRKKKPDF--------RTIILSIYDTPAFVQSALDAGASAYLTKCCGPEEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D +  +           +          ELT RE E    +  G
Sbjct: 112 VQAVRSVHQGGCYLCADAMRAL-----------RQTPQQQHGIQELTNREREVFDLLVSG 160

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   IA  L +S  TV+ + A+++ K    +    + YA+ +NI+
Sbjct: 161 LSVKVIAEQLNLSHKTVHVHRANVLGKLQCDSTIELVHYALEHNII 206


>gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 255

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 76/251 (30%), Gaps = 31/251 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E   V ++L  +DE     ++        +     L+           L         ++
Sbjct: 28  ETAPVRVLLIDDDEFVRRVIAQELLSDMRI----QLEGQADSIREGRKLLARHEFDVLMV 83

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                      D  +S    F+L+      + +    V+                 +   
Sbjct: 84  -----------DLRLSDGMGFELISEARSHQSNGEIIVISAL--------EDDSHVLRAF 124

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH---- 179
                 Y      +      ++ +   G  I       +              D      
Sbjct: 125 ELGATGYLLKNAWLQSFAEAVLHVVNGGAAITPRLARRLLHRLNNNHRHAHQGDPAGHAP 184

Query: 180 ----WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G+D  LT RE E L +++ G  S EI   LGI+  TVN +I SI +K    +R+ 
Sbjct: 185 PPRQPGRDATLTPRESEILRFVACGYVSAEIGERLGITWQTVNVHIKSIYKKLHVHSRAQ 244

Query: 236 AIAYAVRNNIV 246
           A+ +AV   ++
Sbjct: 245 AVNFAVHTGLI 255


>gi|300790264|ref|YP_003770555.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799778|gb|ADJ50153.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 206

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L R  +     +D  +     
Sbjct: 3   RVMLVDDHPVVREGLRGMLEAEPDLTVVGEAGSGDEAVALDRVAVPDVVLMDLRMPGLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +   +  +          +    + T  + +       + Y       A +   
Sbjct: 63  VGATKRILREQPGR--------RIVVLTTYETDADILRAVEAGASGYLLKDASRAELANA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++           A    N  ++ +        L+ REVE L  +++G T+
Sbjct: 115 IRAAARGETVLAPSV-------AGKLVNRVRNPEPQP-----LSAREVEVLRLVAKGGTN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I   L IS  TV  ++  +  K     R+ A+  A+  N++
Sbjct: 163 ADIGRALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLL 205


>gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella
           lenta DSM 2243]
 gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 213

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 15/225 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT  V   P     L  ++     V             G     L   +      +D  
Sbjct: 2   IRTLIVDDDPFVRMSLQTILEAQDDVEVC-----ALGADGDEAVELFERERPDVLLMDIQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +            +    +F   F      +         Y     +V
Sbjct: 57  MPGSDGLGAAERILG--------AHKHARIVFLTTFSDDEYIVRALRLGAKGYLIK-QEV 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A I   L  +     ++  + L  + +L +      ++      +   LT RE   +  +
Sbjct: 108 ATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMRS-GLTERESAIVELV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +EG  + EIA  L +S  TV N+I++I++K   K R+  +    R
Sbjct: 167 AEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211


>gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
 gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans
           OM5]
          Length = 195

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 59/178 (33%), Gaps = 15/178 (8%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNR 129
           P                 ++ R  +       +                      G+   
Sbjct: 18  PDGWAARYLDQNYLPRDPIVGRLQKDRNAFSWSESYKSCPEPDNVRAVGGEAADFGLVEG 77

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTG 188
           +      + +    L     +   +       +  LA +    +          +  L+ 
Sbjct: 78  FVIPITTLDQRIAALSFGGARD-DLSNRDRSALIFLANFAIGHWLYLRRPRPTCNKTLSP 136

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++CL W  EGKT  EI+VILGISR+TV  +I S   K     +  AIA A+R  I+
Sbjct: 137 RELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVNKPHAIAIAMRLKIL 194


>gi|54298635|ref|YP_125004.1| transmission activator LetA [Legionella pneumophila str. Paris]
 gi|148358619|ref|YP_001249826.1| transmission activator LetA [Legionella pneumophila str. Corby]
 gi|296108291|ref|YP_003619992.1| Legionella transmission activator LetA [Legionella pneumophila
           2300/99 Alcoy]
 gi|53752420|emb|CAH13852.1| Legionella transmission activator LetA [Legionella pneumophila str.
           Paris]
 gi|148280392|gb|ABQ54480.1| Legionella transmission activator LetA [Legionella pneumophila str.
           Corby]
 gi|295650193|gb|ADG26040.1| Legionella transmission activator LetA [Legionella pneumophila
           2300/99 Alcoy]
          Length = 219

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + +   +     +  + +   G      V+        LD  +     +
Sbjct: 4   VLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGW 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +  +  +           +      + P            Y +       +   +
Sbjct: 64  EVTRRLKKTNPNI--------KVIAVTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + +  +   ++ + +          +        L+ RE++ +  I+ G    
Sbjct: 116 RKVAKGEKYLSAEIAQKMAINSLQ--------EPQDSPFDLLSEREMQVMLMITSGMNVQ 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  T+N Y   +  K   K        A+++ I+
Sbjct: 168 DIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRII 209


>gi|89073186|ref|ZP_01159725.1| putative nitrate/nitrite response regulator protein [Photobacterium
           sp. SKA34]
 gi|89051139|gb|EAR56596.1| putative nitrate/nitrite response regulator protein [Photobacterium
           sp. SKA34]
          Length = 208

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 24/224 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + +++ ++                G     L          LD  + 
Sbjct: 6   VMIVDDHPLMRRGIGQLLSIESDFQLVGEASN-----GNDAIALAHEKSPDLILLDLNMK 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +              +     +   V  +  +  T      + Y     +   
Sbjct: 61  GLSGLDTL-------IAMRDEGILACIVI-LTVSDSRSDIKTVLNAGADGYLLKDTEPDE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L      G+                     +S +       +LT RE + L  +++
Sbjct: 113 LIEQLKSALCGGKAYSDI-----------VKESLESPNTPTNILSQLTERETQILQEVAK 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G+ + +IA  L IS  TV  ++ S+++K   K+R+ A    ++ 
Sbjct: 162 GQRNRQIAEQLFISEATVKVHMKSLLKKLQVKSRTAATILYLQA 205


>gi|127512752|ref|YP_001093949.1| response regulator [Shewanella loihica PV-4]
 gi|126638047|gb|ABO23690.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 229

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +       S                      +
Sbjct: 17  ISVFLVDDHELVRTGIRRILEDERGIKVVGEAGDGESAVQWCR---------------NN 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 62  EADVILMDMNMPGIGGLEATRKILRYQS--------HAKIIVLTIHTEDPFPTKVMQAGA 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L         +           L+
Sbjct: 114 SGYLTKGATPPEVIQAIRQVAHGQRYLSPEIAQQMAL--------SQFNQSEDNPFKSLS 165

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+   +I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 166 ERELQIMMMITNGERVSDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 224


>gi|229528208|ref|ZP_04417599.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229334570|gb|EEO00056.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
          Length = 250

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90
           L++++       +    +     + G    +        +  ++ I       FD    +
Sbjct: 20  LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDWFDDGENI 79

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIR 141
             +   KY  + +   E   P F              +  P G   +      F    + 
Sbjct: 80  DAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGLE 139

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISE 199
             + L   K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 140 GAVSL-GGKAIDSSPRARCELSLLSTYAFFAARRLLEYSDPNRSALLSKREKEVLSLTAL 198

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 199 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 243


>gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 239

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 63/222 (28%), Gaps = 24/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +     +  + E   G       +        +D  +      
Sbjct: 7   LLIVDDHFVVRSGLVAALEIEDDIDIIGEAKRGDQALEAYQRLRPSVVLMDLQLPGLSGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +       +    +         F    E ++        Y   +     +   L
Sbjct: 67  QATAAICA-----HDPEARILVFST---FSHEDEILSALNAGAAGYVQKSSTREELLDAL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +  D    +                       +T RE E L  I+ G+++ 
Sbjct: 119 RRVAAGGTSLPPDLAQRLESQRIRL---------------TVTPREREVLELIASGQSNK 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  +GI+ +TV  ++  I+ K     R+ A A A+R  I+
Sbjct: 164 RIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGII 205


>gi|89092784|ref|ZP_01165736.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
 gi|89082809|gb|EAR62029.1| transcriptional regulator, LuxR family protein [Oceanospirillum sp.
           MED92]
          Length = 223

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 28/244 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + I+L  +     +    L    + +  +   D                G S   +  
Sbjct: 3   SPIKILLVDDHPLVRAGFQRLLISDESIEIVGEADN---------------GQSACEMYA 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR---PTELFCPVFHTLPENITP 122
             +     +D  + SD   + +        +    ++        L        P     
Sbjct: 48  SHMPDVVIMDLNMPSDANTEEMSNNLNGGLEAIRRIISHDPKAKVLVLTAMEIDPFPAHV 107

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + +       +   +  +      I  +    I    +       S       
Sbjct: 108 VNAGAKGFLTKRCAPDELLEAVKAIHAGEEYITEEIRLRITEGGSADGASLAS------- 160

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE++  + ++EG+T   +A  + +S  TV+ +  +I RK      S  +  A+R
Sbjct: 161 ---LTKRELQIFSLLAEGRTVSIVAEEMFLSPKTVHAHRTNIFRKLKISNNSELVHLAIR 217

Query: 243 NNIV 246
           +NIV
Sbjct: 218 HNIV 221


>gi|307332414|ref|ZP_07611482.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306881948|gb|EFN13066.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 240

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 14/204 (6%)

Query: 46  TMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              +  + E         ++     +   LD  +      +++R  A    D+   V   
Sbjct: 48  RTGVEVVGEAADVDQAVTVITATRPEVVLLDVHLPGGGGVEVLRRSASLMADQERPV--- 104

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   V     + I    G    Y + T     +   +  +     +           
Sbjct: 105 -RFLALSVSDAAEDVIGVIRGGARGYVTKTITGTDLVDAIFRVSEGDAVFSPR------- 156

Query: 165 LAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           LA +  + F S D     +    LT RE E L  I+ G    EIA  L IS  TV ++++
Sbjct: 157 LAGFVLDAFASTDAPPVDEDLDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVS 216

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK     R     +A    +V
Sbjct: 217 AVLRKLQLSNRHELTRWATARRLV 240


>gi|111017070|ref|YP_700042.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816600|gb|ABG91884.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 215

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  + E     ++ L T    L  +           R+ AL               
Sbjct: 2   INVFLVDDHEVVRRGIADLLTADPDLTVVGEAASYSQAMARVPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     + +  +L          F      +       
Sbjct: 47  KPDVAVLDVRLPDGNGIELCRELHSLMPELHCLIL--------TSFSDDQAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       + +          +     G    LT
Sbjct: 99  SGYVVKDIRGMELTRAVHDVGAGRSLLDSRAAAALMVKVR------ANAGEKDGIFGHLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A + 
Sbjct: 153 NQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATKM 208


>gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 198

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    + +  +  +                 G      +   
Sbjct: 1   MKLLIAEDQAMLRDALKQLLLMEEGVQTVAAVAT---------------GQEAVAFLSQH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +  +              +    F  L           
Sbjct: 46  QVDVAILDVEMPEKNGLDVLEWIKATS---------DTKVIIVTTFKRLGYFQRAVKAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      ++ +   +  +   G+    + +  I +                     L+
Sbjct: 97  DAYVLKDRSISELMTTIKTVLSGGKEYSPELMENIVV-----------------NPNPLS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+  L  I++GKTS EI+ IL +S  T+ NYI+SI  K     R  AI+ A  N  +
Sbjct: 140 KQEMNILYLIAQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNRMEAISLAKENGWL 198


>gi|326330805|ref|ZP_08197106.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
 gi|325951335|gb|EGD43374.1| regulatory protein, LuxR:Response regulator receiver
           [Nocardioidaceae bacterium Broad-1]
          Length = 228

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + +  +D    S +  +      +  +                    G     LVR 
Sbjct: 13  KIKVGIVDDDPLVRSALGLMLGGQADIEVVGEATD---------------GQEALALVRT 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D  R +            + P  +    F      +   A  
Sbjct: 58  SAPDVVLMDIRMPRINGLDATRRVLTEA--------RPPRVIVLTTFGADEYVVDALAAG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         I   +  +     I+       +      +    ++      +   L
Sbjct: 110 AEGFLLKDTPPPEIVAAIRAVAAGEPILSPKATRTLITRLRAEPTGDRAAAAGR-RLEAL 168

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E    +  G ++ EIA  L +S  TV  +++ +  K     R           +V
Sbjct: 169 TEREHEVALAVGRGLSNAEIAKELYLSIPTVKAHVSRLFDKLGATNRVQIAITVHDAGLV 228


>gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 24/227 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS 79
             V  +    D     + L   ++    M  + +   G     L R        +D  + 
Sbjct: 20  PGVIRVLIADDHPVVCLGLLGIINGQPDMTVVGQAKTGTEAVALARKHSPDVILMDLRMP 79

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +    +                 +    +    +     A     Y        +
Sbjct: 80  GMSGVEATEVIRAER--------PESAVIVLTTYQGDEDIRKALAAGAQSYLLKGMSHLK 131

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +        R     +       A               L+ RE++ L  I  
Sbjct: 132 LLEAIRSVRTGHTYFPRAIRNSVPGKLNRAA---------------LSPREMDILRLIVR 176

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L I+R TV  ++  I+R+     R+ A+  AV+  IV
Sbjct: 177 GLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRGIV 223


>gi|157370090|ref|YP_001478079.1| response regulator [Serratia proteamaculans 568]
 gi|157321854|gb|ABV40951.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 218

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C                         +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCR---------------GN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       Y   ++    +   +    P          
Sbjct: 47  AVDIVLMDMNMPGIGGLEATRKIVR-----YAPDVK---VIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +      F  L
Sbjct: 99  AGYLSKGAAPQDVVNAIRAVQAGQRYIASDIAQQMAL---------SQLEPQTETPFSCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++GK  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMLMITKGKKVNEISEQLSLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 215

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 11/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E  G      +VR        +D  +S    
Sbjct: 3   RVVLVDDQAVIRAGFRILLEEQEDITVVGEASGGREAVRVVRATRPDVVCMDLRMSEGDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +    +D    VL          F    +         + +     +   +   
Sbjct: 63  LTATRQIVAERQDSAPAVL------VVTTFDMDADVFGALEAGADGFILKDCEPEELVDA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L     ++ +     +      +    +    +      LT RE E +  ++ G ++
Sbjct: 117 VRRLALGYGLVDQSVTRRV----IAEFARRQGRSENHEALGVLTEREREVIQLLASGMSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +  +TV +++  I+ K   + R  A+ +A RN +
Sbjct: 173 AEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214


>gi|300779885|ref|ZP_07089741.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533995|gb|EFK55054.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 222

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 61/230 (26%), Gaps = 12/230 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDS 76
            R       P     LA ++     +          E V A                LD 
Sbjct: 1   MRLLLADDQPLLLSALATILNSQPDIDVVCTATNGQEAVDAVDRVQQAGAGGIDIAVLDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         + +                 +    F+             + +     D
Sbjct: 61  RMPVMDGITAAKKIMPLGP----------KVIMLTTFNDDELVQAAITAGVHGFLLKDAD 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              +   +  +     ++        +  +           D        LT REVE L 
Sbjct: 111 PDVLADAVRAVDRGESVLASGVTGAVLEWVRGGVDKRNALSDYERQALSMLTAREVEVLA 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+ G T+ EI+  L I+  TV  ++ +++ K   + R   +  A R  I
Sbjct: 171 EIAAGATNAEISQRLFIAPTTVKTHVKNLLVKLGARDRVALVLLAHRAGI 220


>gi|254445671|ref|ZP_05059147.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259979|gb|EDY84287.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 213

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 16/221 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV------RWDLFQEQKLDSIVSSDW 82
            S+   ++  ++   +    + A+     +   +L             + + D ++    
Sbjct: 1   MSEASIKIAIVEDQDTTRESLEAIINLEHSMECILTCSSGEEALSKLPKARPDVVLMDIM 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              +      S+       ++        V+       +        Y        ++  
Sbjct: 61  MPYMTGIECASKLKDLMPEIEIVM---ITVYQDPDLIYSALRAGACGYLLKRSTPEQVTT 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +      G  +  +             + F+           L+ RE E L ++++G T
Sbjct: 118 AIRDAKRGGMPMSVEVARR-------VISYFRQEAQVSSDVDSLSNREREVLEFVAQGFT 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EIA  L ++  TV+ ++ +  +K   +TR+ A     ++
Sbjct: 171 NKEIAAKLSVTPETVHWHLKNCYKKLHVRTRTEAAMKLRQS 211


>gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 224

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 15/224 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D       L   +S+   M  + E   G      +++       LD  +   
Sbjct: 5   VIRILIADDHDIIRHGLKRIISFESDMDIVCEAENGEKALEFLKYHELDVIVLDCHMPIM 64

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +++ +   +             +   V        T  +   + Y         I 
Sbjct: 65  DGIQVLKSIKDKDNKI--------KVIMLTVEDDRKTLNTAISIGADGYMLKDSAGTDIA 116

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  ++   + I +       L++   +++             L+ RE+E L+ IS+G 
Sbjct: 117 EAIRRVYKGEKYIDKS------LVSTLFSDIKIKAKKASNILDNLSKREIEVLSKISKGY 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EI   L IS  TV NY  ++ +K     R  A   A+ NNI
Sbjct: 171 SNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIENNI 214


>gi|326622251|gb|EGE28596.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 270

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 61  MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 108

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 109 ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 157

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L        + +N       H   D 
Sbjct: 158 AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLN-------FISNTRPPKGGHH--DM 208

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268

Query: 245 IV 246
           ++
Sbjct: 269 LL 270


>gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 12/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S    +  + E   GA     V         +D  +     
Sbjct: 3   RVLIVDDERMVCAQLRTILSAAEDLVVVAEAYDGAEAVEAVVRHRPHVVLMDLHMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +                 +    F      +   +     +         +   
Sbjct: 63  LAAIEHIVRFPAPP--------KVVVLTTFDRDGYVLRAMSLGAAGFLLKDTPPEDLIGL 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++       +   +   A    + D    +  +LT REVE LT + EG ++
Sbjct: 115 VRVAADGHTVLSPAATRRLLTAS---AGHGAARDRALARIADLTDREVEVLTCLGEGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L +S  T+ +Y++ ++ K     R+ A   A    +
Sbjct: 172 AKIARRLYLSEATIKSYVSRMLVKLGFSNRTQAGLLASEAGL 213


>gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 200

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV+  +     +D  +      +    +                 +    F   
Sbjct: 36  GKDAVQLVKLHMPDICIMDIEMPIMNGLEAAEEIKGYG----------CKVMILTTFARP 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      N Y         +   +  +    RI   + + E               
Sbjct: 86  GYFERAVKAGANAYLLKDSPSEELAASIRSIMAGRRIYASELVDEAY------------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G++  LT RE E L  I++GK + EIA  L I+  TV NYI+ I+ K     R  A
Sbjct: 133 ---SGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEA 189

Query: 237 IAYAVRNNI 245
           I        
Sbjct: 190 ITRFKEKGW 198


>gi|330860550|emb|CBX70850.1| response regulator uvrY [Yersinia enterocolitica W22703]
          Length = 218

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +     + C                          
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVADEMQCGEDAVKWCR----------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++       +    A  +  ++         +   +    P          
Sbjct: 45  ---NHIVDIVLMDMNMPGIGGLEATRKILRFSP---DTKVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       +   +  +    R I  D   ++ L                     L+
Sbjct: 99  SGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMTLGQLE--------PPTETPFSCLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 151 ERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
 gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
          Length = 213

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 15/225 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT  V   P     L  ++     V             G     L   +      +D  
Sbjct: 2   IRTLIVDDDPFVRMSLQTILEAQDDVEVC-----ALGADGDEAVELFERERPDVLLMDIQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +            +    +F   F      +         Y     + 
Sbjct: 57  MPGSDGLGAAERILG--------AHKHARIVFLTTFSDDEYIVRALRLGAKGYLIK-QEA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A I   L  +     ++  + L  + +L +      ++      +   LT RE   +  +
Sbjct: 108 ATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMRS-GLTERESAIVELV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +EG  + EIA  L +S  TV N+I++I++K   K R+  +    R
Sbjct: 167 AEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211


>gi|288921284|ref|ZP_06415567.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288347315|gb|EFC81609.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 217

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I+L  +       V  +      L  +           R  A               
Sbjct: 4   PIRILLADDHALVRRGVRLILDSEPDLTVVAEAADGAEAIERARA--------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                ++ D  +       L    A  E  +    ++        ++             
Sbjct: 49  -----EQPDLAILDIAMPRLTGLQAARELSRALPDVRIL---ILTMYDNEQYFFAALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +             +    +  +            + D   G+   +
Sbjct: 101 ASGYVLKSVADRDLVEACRAAVRGEAFLYPGAVNALI---RDHLERAAAGDPGTGR--VI 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++EG +S +IA IL IS  TV  + +++++K   + R     YA+R  ++
Sbjct: 156 TDREEEVLKLVAEGHSSRQIADILFISVKTVERHRSNLLQKLGLRDRLELTRYAIRAGLI 215


>gi|239941331|ref|ZP_04693268.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987793|ref|ZP_04708457.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291444772|ref|ZP_06584162.1| two component response regulator MppU [Streptomyces roseosporus
           NRRL 15998]
 gi|291347719|gb|EFE74623.1| two component response regulator MppU [Streptomyces roseosporus
           NRRL 15998]
          Length = 230

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 60/222 (27%), Gaps = 20/222 (9%)

Query: 35  RMIPLDCTVSWTMRMYALT-----------EYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R++  D           +               G +   L R         D  +     
Sbjct: 11  RILIADDQEDVRSGFRLILGSQPDMTVVGEAADGLTAVGLARTLRPDLVLADIRMPGVDG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R +A         V      L    F       T        +         +  G
Sbjct: 71  LEVTRRLAGPG------VTDPMRVLVVTTFDHDDYVHTALRDGACGFLLKRSGPGLLIEG 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +       A       V       LT RE E    ++EG T+
Sbjct: 125 VRAAMAGDMLISPQITVRL---LRNLAPAAVPAPVASPSPSPLTAREQEIARLVAEGLTN 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EI   L I+  T   +IA++  K   + R G  A++  N +
Sbjct: 182 AEIGEKLYITAGTAKTHIANVQAKLRVRNRVGIAAWSWENGL 223


>gi|78357716|ref|YP_389165.1| two component LuxR family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220121|gb|ABB39470.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 215

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 62/240 (25%), Gaps = 32/240 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V+  +       V  L                +     +                   
Sbjct: 4   TVVIVEDMGIVREGVRALLGGCPGYRIAGEASDGIEALQVVERCA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      D +R +             R   +     +             +
Sbjct: 49  PDVVLMDIGMPRMDGADAIREIKRR--------FPRTKVIALTAHNKSALIFRTLHAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFEL 186
            Y   T +   +   +  +    R I  D       ++    +     D          +
Sbjct: 101 GYMLKTGNCETLVGAIQTVLEGRRYISPD-------ISQSLIDSLAGSDPMDFANPIDTI 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + L  I+ G  + EIA  L IS  TV  + AS+ RK    + +     ++   ++
Sbjct: 154 SVREKQVLKLIARGMGNKEIAAELCISHKTVEKHKASLKRKLRVNSNAEMATLSMEYGLL 213


>gi|323703023|ref|ZP_08114679.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532036|gb|EGB21919.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 213

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 72/243 (29%), Gaps = 31/243 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  +++++  + E     +     R      +            +               
Sbjct: 1   MNAISLIIVDDHEIVREGLKLTLQREPDFNVIGEASSGRELIKLIKT------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-NITPP 123
                   + D ++  +   +           K Y  L+    +    +    +  +   
Sbjct: 48  -------TRPDVVLLDERMPEERGIEICRTLTKLYPDLKI---IILTAYAEQEDYIVQAM 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +     ++  ++  +  +     ++           AA   N  K         
Sbjct: 98  MAGAKGFLIKNVEIFELKRAIRAVVRGETVLDSQV-------AASIVNKLKEVPNKNSSL 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT +++     +++G  + EIA  L +S NT+  +I +IMRK     R   +A  +  
Sbjct: 151 SLLTEQQISIAKLVAQGLKNREIAEQLYLSENTIKFHIQNIMRKLNVNNRIALVAKLLEK 210

Query: 244 NIV 246
           +I+
Sbjct: 211 DII 213


>gi|297203424|ref|ZP_06920821.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148400|gb|EDY61596.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 227

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D    + +S +   ++ +  +            +                  
Sbjct: 2   IRLLLVDDDPLVRAGLSLMLGGAEDIEIVGEAADGTEVEAAVDRT--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + S         +           +          FH   + +       
Sbjct: 47  RPDVVLMDIRMPSVDGLTATERLRGR---PDAPQVV-----VLTTFHADEQVLRALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A I   +  +     ++      ++ +  A              +   L 
Sbjct: 99  AGFVLKDTPPAEILAAVRRVAAGDPVLSPTVTRQL-MAHAAGTAADTRRARARERIAALN 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    + +G ++ EIA  L +S  TV  +++ ++ K     R      A    ++
Sbjct: 158 DREREVAVAVGQGLSNAEIAAALYMSVATVKTHVSRVLAKLDLNNRVQIALLAYDAGLL 216


>gi|117618841|ref|YP_856117.1| LuxR family DNA-binding response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560248|gb|ABK37196.1| DNA-binding response regulator, LuxR family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 212

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 71/235 (30%), Gaps = 31/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L    + +  +                    G     + +   
Sbjct: 7   SVLVVDDHPLMRKGIVQLLALEENIEVVGEASN---------------GTDAVAMAKESE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +   E             +   V     + +       +
Sbjct: 52  PDLILLDLNMKGLSGLDTLKALRTEEVT--------SRVVILTVSDARQDVVALLKAGAD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L  +    +I+       +              D    K   LT 
Sbjct: 104 GYLLKDTEPEMLLAQLADVMTGKQILSEPLRPYL--------ENIYELDHLQQKLESLTR 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  I++G ++ ++A +L IS  TV  ++ S+++K   ++R  A    +  
Sbjct: 156 REMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVEAAVMYLEQ 210


>gi|227111773|ref|ZP_03825429.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 210

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 35/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L     +   +                    G     L   D 
Sbjct: 8   RVLIVDDHPLMRRGIRQLLATDAIFDVIGEASN---------------GMEALSLANRDS 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     +         +
Sbjct: 53  PDIILLDLNMKGLSGLDTLHALRRDGIC--------ARVIVLTVSDAPSDIYALMDAGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +            +++ E             +          LT 
Sbjct: 105 GYLLKDSAPEHLLDAIR-----NDDAFSEQVRE-------VLRHRIAIQDTPSPFTVLTE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 153 RELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAATVLYLE 206


>gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 212

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +  T  +  + E   GA     +         LD  +     
Sbjct: 3   RVGVVDDQALVRSGVRGLLELTGDIQVVLEAADGAEALERLAGVRPDVLLLDVRMPGMSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL+R +                 +    F      +         +      + R+   
Sbjct: 63  IDLLRALNDRGCLP--------PTILLTTFDDDEALLAGMRVGARGFLLKDISLERLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +        +        +              LTGREVE L  ++ G  +
Sbjct: 115 VRRAAAGETLFRPGLTERVLDGVRGCGDF-----PKLDLPERLTGREVEVLALMAGGFNN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG S  T+ N+++SI+ K   + R  A+   +    +
Sbjct: 170 REIADALGPSEGTIKNHVSSILSKLGVRDRVRAVLRGLELGYI 212


>gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
 gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium
           accolens ATCC 49726]
          Length = 205

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           VN++L  +     + +  +      +  ++  D                           
Sbjct: 2   VNVMLIDDHPVVRAGLRAILNTFADVHVVMEGDNGADV-------------DKLFADDAP 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         + +  +              L    + T  + +       
Sbjct: 49  EVDVVVCDIQMPGVDGITATKKLTEAGGPP---------VLILTTYDTQADILAAVEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   ++    + R +  + +  +                    +  L+
Sbjct: 100 MGYLLKDSPEEELHEAVLNTAARQRTLAPEVVNLLAQRVGQ-------------PEQSLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ E+A  L IS  TV  ++  I +K    TR+ A+  A    ++
Sbjct: 147 TRELEILRALATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|196232652|ref|ZP_03131504.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223414|gb|EDY17932.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 62/230 (26%), Gaps = 13/230 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
             T   + +    D       L   +          E   G +              LD 
Sbjct: 1   MTTELKTRILLADDHDIVRRGLRTLLELRSDWEICAEASDGRAAVQFAEDLAPDIVILDL 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +A            R   L   +  T        A     Y   T  
Sbjct: 61  SMPELNGLEAARRIAAH--------CPRSRMLMLTMHETEQFVREALAAGVRGYILKTDA 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  L              I           +      G    LT RE E L  
Sbjct: 113 GRDLANAVDALIRGETFFASRLAATIYAAEFAGMGRRRRSKSQAG----LTPREREILQL 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG+ + ++   L IS  T   + A IM K    + +  + YA+RN ++
Sbjct: 169 LAEGRKNRDVGKALNISVKTAETHRARIMAKLGIDSVADLVRYAIRNGLI 218


>gi|319940251|ref|ZP_08014603.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
 gi|319810553|gb|EFW06889.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
          Length = 227

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 70/215 (32%), Gaps = 9/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        +  +       E VG         D       D I+       +   
Sbjct: 4   VLIADDQALIRESLQIILSAHSDIEVVGIVGDGKEVLDKLHYVHPDVILMDIRMPVMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +      ++Y  ++    +    F       +      + Y         +   +  +  
Sbjct: 64  LCTKAVKEHYPDIKI---IILTTFDDDDFIFSALKYGASGYILKGVSTEELHQAIQTVHK 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G +I  +   ++  + +  A    +  V      +++  E + +  I  G ++ EIA  
Sbjct: 121 GGAMINPNIASKVFKIFSQMAQSNFAISVAEENVEDMSQTEWKIIQQIGFGVSNKEIAAK 180

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S  T+ NY++ I+ K   + R+    +AV+  
Sbjct: 181 LFLSEGTIRNYLSGILSKLNLRDRTQLAIWAVQTG 215


>gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
          Length = 200

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSKDLAASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 19/230 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E   +  + +    D    ++ +   +        LT   G     +++         D 
Sbjct: 4   EASPAQSATILLVDDDPNLVLLVKDYLEMQGY-RVLTAAHGNEGLAMLQQQTPDLVICDV 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           ++     +  V  +       +  VL    +          + I       + Y    F+
Sbjct: 63  MMPQMDGYSFVSAVRQQTHLSWLPVLFLSAKGQ------THDRIKGLQTGGDVYLVKPFE 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  L  +   +                              ELT  E   L +
Sbjct: 117 PEELLAQIQALLKQTARL------------REAQGRQALPGPTPPPGIELTPTETRILQY 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EIA  L +S+ TV +++++++ KT    R+    +A+  + V
Sbjct: 165 VARGMSNREIAAELHVSQRTVESHVSNMLGKTGCHNRTELARWAIDYHYV 214


>gi|253688783|ref|YP_003017973.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755361|gb|ACT13437.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 210

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 35/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L     +   +                    G     L   D 
Sbjct: 8   RVLIVDDHPLMRRGIRQLLATDAIFDVIGEASN---------------GMEALSLANRDS 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     +         +
Sbjct: 53  PDIILLDLNMKGLSGLDTLHALRRDGIC--------ARVIVLTVSDAPSDIYALMDAGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +         +       I                       LT 
Sbjct: 105 GYLLKDSAPEHLLDAIRSSDAFSDQVRDVLRHRIA------------IQETPSPFTVLTE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 153 RELDVLQEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAATVLYLE 206


>gi|54022748|ref|YP_116990.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014256|dbj|BAD55626.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 67/230 (29%), Gaps = 14/230 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
              +  + +    D       L   +     +  + E   G                LD 
Sbjct: 1   MTAAAPARILLADDHALVRAGLRLIIDAEPDLTVVAEAANGYEAVQRAADTPLDLVILDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +  S  D           L   ++              + Y   +  
Sbjct: 61  AMPRMTGIQAAREIHRSHPD--------LRLLMLSMYDNEQYFFESLKAGASGYVLKSVA 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +             +    +  +      +  + ++       D  LT RE E L  
Sbjct: 113 DRDLLEACRATLRGEPFLYPGAVTSLI-----REWLQRTRAGTPPPDNILTAREEEILKL 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG +S  IA  L IS  TV+ + A+I++K   + R     YA+R  ++
Sbjct: 168 VAEGYSSRGIADTLVISVKTVDRHRANILQKLGLRDRLALTRYAIRVGLI 217


>gi|295395667|ref|ZP_06805859.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971483|gb|EFG47366.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 223

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 69/245 (28%), Gaps = 35/245 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  ++      +  L   +D +  +  ++        +  L               
Sbjct: 5   IRVVIADDNGIVRMGLESLLAATDSVEVVASVEHGSLAVKAVEEL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  + ++ +              L               +   
Sbjct: 50  KPDLCLLDVRMPVMNGIEATKEISKT-----------CKVLMLTHSEDAENVTAAISNGA 98

Query: 128 NRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--------KSYDV 178
           + Y      +   I   +  +     ++       +     +              +   
Sbjct: 99  SGYVVYSELNTDYIYQTMQSVLAGAMVVSPTASSALLSPTPHVEEHLDKNVSEPSSATVP 158

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                F L+ RE E +  +++G  + +IA    +S  TV N+I  I  K    +R+ A++
Sbjct: 159 SPTDQFGLSRRETEVMVLVADGLNNRQIAESFFLSEKTVKNHINRIFAKMNVTSRAEAVS 218

Query: 239 YAVRN 243
             ++ 
Sbjct: 219 IWLKR 223


>gi|297192036|ref|ZP_06909434.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719515|gb|EDY63423.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 227

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 10/234 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
            + D+ RT     +    D  A    L   +     +    E   G     L R      
Sbjct: 3   AQADDPRTGARIRVLVAEDQSAVRAGLVLILRSAPDIEVAGEAADGEEAVRLARELRPDV 62

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +         R +   +             L    F                + 
Sbjct: 63  VLMDVQMPRLDGVSATRQVVAEKLAD---------VLVLTTFDLDEYVFGALRAGAAGFL 113

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               +   +   +  +     +I       +    A    +  +          LT RE 
Sbjct: 114 LKNTEAGDLLQAVRTVARGEGMIAPAVTRRLIAEFAAPGPVRSADAPDPAVLDTLTRRER 173

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E L+ + EG ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 174 EVLSCLGEGMSNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 227


>gi|271962388|ref|YP_003336584.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505563|gb|ACZ83841.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 25/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R       P   D L+ M                    GA+   L +        +D 
Sbjct: 5   PIRLLIADDHPVVRDGLSSMFASAPGFEVLGAA-----PDGAAVVRLAQELRPDVILMDL 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +        +  +A                L    + +  + +         Y      
Sbjct: 60  RMPGMDGLAAIIELARLGVT--------ARVLVLTTYDSDTDVLPAIEAGATGYLLKDSP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +  G         ++       +        N  ++          L+ RE+E L  
Sbjct: 112 REELLRGARAAARGESVLAPSVAARL-------MNRMRAPAPQL-----LSPRELEVLEL 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G T+ E AV L I+  TV +++ +I  K     R+ A+  A    ++
Sbjct: 160 VAAGNTNREAAVRLFITEATVKSHLLNIYTKLGVNDRAAAVTEAFNRGLL 209


>gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 209

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 25/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     L  ++                E +G     L+         +D  
Sbjct: 2   IRILLVDDHPVVRAGLLGLLSSQPDFEVVGEASNGLEALG-----LLERAGADVVLMDLR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +             R   L    + T  + +         Y       
Sbjct: 57  MPQMDGVAAIRQVRAR--------FPRVQILVLTTYDTDSKIVRAVEAGATGYLLKDVPR 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L      ++       +               +    +  L+ RE+E L  +
Sbjct: 109 EELFRAVRLCAKGEAVLSPPVAARLL------------GRMRGTAEETLSVRELEVLALV 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L IS  TV  ++     K     R+ A+  A+   I+
Sbjct: 157 AKGFSNKEIARELKISEATVKTHLLHTFEKLGVDDRTAAVTVAIERGIL 205


>gi|297158191|gb|ADI07903.1| two-component system DNA-binding response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 243

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 75/244 (30%), Gaps = 26/244 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            ++V +VL  +     + V                   V        + +        ++
Sbjct: 24  QRRVRVVLVDDHRMFRTGVQAEIG--------ETARTGVEVVGEAADVDQA-----VTVI 70

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +      +++R  A         V      L   V     + I    
Sbjct: 71  SATRPEVVLLDVHLPGGGGVEVLRRSAALMAAADRPV----RFLALSVSDAAEDVIGVIR 126

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G    Y + T     +   +  +     +           LA +  + F S D     + 
Sbjct: 127 GGARGYVTKTITGTDLVDAIFRVSEGDAVFSPR-------LAGFVLDAFASTDAPPVDED 179

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A  
Sbjct: 180 LDRLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATA 239

Query: 243 NNIV 246
             +V
Sbjct: 240 RRLV 243


>gi|302538977|ref|ZP_07291319.1| response regulator [Streptomyces sp. C]
 gi|302447872|gb|EFL19688.1| response regulator [Streptomyces sp. C]
          Length = 222

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 10/224 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     +     +     M  + E   GA    L R        +D  +     
Sbjct: 4   RIVIADDEALLRMAFRMVLEAQPDMAPVGEAADGAEAVRLARELRPDVVLMDVRMPGTDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +          V      L    F              + +         +   
Sbjct: 64  IEATRQVVG--------VSPGSRVLILTTFDVDAYAFAALGAGASGFLLKNTRPEELLTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +     ++       +        A+   +  V   +   L+ RE E L  +  G +
Sbjct: 116 IRNVAAGDAVLSPRITRRLLEDFRPRLADGGAAVAVRDERLGRLSAREREVLVEVGRGLS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV +++  ++ K   + R  A+ +A  N +V
Sbjct: 176 NAEIAAALSLAEATVKSHLGRVLLKLGLRDRIQAVVFAHENRLV 219


>gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 189

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTTNEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|257092348|ref|YP_003165989.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044872|gb|ACV34060.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 213

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ I+L  +       +  L  ++D +  +   +        +                 
Sbjct: 5   KLQILLVDDHAVVRGGLRLLLAQTDDMEVVSEAENAEQAISMIRQ--------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           + F    +D  +      DL++ +             R   L   ++      +      
Sbjct: 50  NEFDVALVDIGLPGKGGLDLLKQIKAER--------PRIAVLMLSMYAEEVYAVRALKAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y +       +   +  +   GR +    L ++ +                     L
Sbjct: 102 ASGYLTKNSPPGTLLAAIRKVAGGGRHVSPALLEQLAVEVGQ---------GRKSASDAL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  ++ G++  +IA  L +S  TV  Y A I+ KT   + +    YA+   ++
Sbjct: 153 SDREIEVLRRLASGESLTQIAEALHLSPKTVTTYRARIVEKTGLHSNAELTRYALDKGML 212


>gi|254488074|ref|ZP_05101279.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214044943|gb|EEB85581.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 218

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 64/230 (27%), Gaps = 27/230 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             +   V   P  ++ +  ++     V     +       G +              +D 
Sbjct: 9   PIKVMIVDDHPMVAEGIQSILESYDDVDVVACLSN-----GRAAIDQFEALDPDVILMDL 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +            +                 +  +     Y      
Sbjct: 64  NMPEIGGLSATEIILERR-----PGTRIVILSM---HDNPEYISSALSHGAMGYLLKDVP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I++ +  +    + +       +                   +   LT RE   L  
Sbjct: 116 TDEIKLAIDTVMQGAQYLCTGAQGSLQ--------------PKDDERESLTEREQTILLQ 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G+++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 162 LAQGQSNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVL 211


>gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 237

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 18/241 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLD 75
            T+ V   P       R++ +D        + A  E  G      V  +      +Q L 
Sbjct: 1   MTASVPEQPPV-----RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFGKAQQLLP 55

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D     +    L  + +    L     +F        +         + Y    F
Sbjct: 56  DVVITDVMMPRLDGYGLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPF 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAY------QANMFKSYDVHWGKDFE 185
           D   +   +  +  + + +L++       ++G +A             ++          
Sbjct: 116 DPDELVARVRNVAQRQQRLLQEAARFADADMGQIAKQITEIRSLLAQAEALPAQEPVQHT 175

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+++ +
Sbjct: 176 FTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRL 235

Query: 246 V 246
           V
Sbjct: 236 V 236


>gi|46580981|ref|YP_011789.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450401|gb|AAS97049.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234669|gb|ADP87523.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris RCH1]
          Length = 216

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  + +     +  L   +     +                    G     +V  
Sbjct: 2   PITVVIVEDLDIVREGIKALLDANGEFIIVGEASD---------------GIEALRIVEK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +R +            +    L               +  
Sbjct: 47  HAPDIVLMDLTLPVMEGAEAIREIKRRR--------ETTKVLALTAHKKDSLIYKTLSAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
            + Y         +   +  +    R I  +       ++    + F  +          
Sbjct: 99  ADGYLLKNASRDILFQAMQTVLAGRRYISPE-------ISDLLIDDFLRHGRRDEASMLD 151

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L  ++EG  +  +A  L IS  TV  + A++ RK  T + +  + +A+ + 
Sbjct: 152 LLSDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTASTAELVTFAIEHG 211

Query: 245 I 245
           +
Sbjct: 212 L 212


>gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
          Length = 165

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 15/165 (9%)

Query: 96  DKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLTFDVARIRI 142
                V+Q           +                N     G+ + +      +   R 
Sbjct: 1   MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGK 201
           GL     +   I   +   + LLA+Y        D     +   LT RE E L W++EGK
Sbjct: 61  GLTFAG-RQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGK 119

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI  ++GISR+ V+ ++ S   K    +R+ A+A   R  ++
Sbjct: 120 TDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164


>gi|114561805|ref|YP_749318.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114333098|gb|ABI70480.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 209

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 67/231 (29%), Gaps = 31/231 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L T     +                      G      V  D 
Sbjct: 6   SVLVVDDHPLLRRGICQLITSDGDFSLFGETGT---------------GLEALTAVAEDE 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  M                 +   V     + +       +
Sbjct: 51  PDIILLDLNMKGMSGLDTLNAMRQEGVT--------ARIVILTVSDAKQDVVRLLRAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       R+I  +    +  L     +     +        LT 
Sbjct: 103 GYLLKDTEPDLLLEQLKKAMLGHRVISDEVEAYLYELKNTIDDNSWIEN--------LTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE++ L  ++EGK++  IA  L IS  TV  ++ +++RK   K+R+     
Sbjct: 155 RELQILQELAEGKSNRMIAEDLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|54295484|ref|YP_127899.1| transmission activator LetA [Legionella pneumophila str. Lens]
 gi|22074635|gb|AAL79360.1| GacA regulatory protein [Legionella pneumophila]
 gi|53755316|emb|CAH16812.1| Legionella transmission activator LetA [Legionella pneumophila str.
           Lens]
 gi|307611522|emb|CBX01199.1| Legionella transmission activator LetA [Legionella pneumophila
           130b]
          Length = 219

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + +   +     +  + +   G      V+        LD  +     +
Sbjct: 4   VLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGW 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +  +  +           +      + P            Y +       +   +
Sbjct: 64  EVTRRLKKTNPNI--------KVIAVTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + +  +   ++ + +          +        L+ RE++ +  I+ G    
Sbjct: 116 RKVAKGEKYLSAEIAQKMAINSLQ--------ESQDSPFDLLSEREMQVMLMITSGMNVQ 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  T+N Y   +  K   K        A+++ I+
Sbjct: 168 DIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRII 209


>gi|329935679|ref|ZP_08285485.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
 gi|329304857|gb|EGG48729.1| putative two-component system response regulator, LuxR family
           [Streptomyces griseoaurantiacus M045]
          Length = 227

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 9/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + E   GA+   L          +D  +     
Sbjct: 4   RVLVADDQGVVRAGFAAVIDAEEDMTVVGEAADGAAAVRLTGELAPDVVVMDIRMPELDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 L    F              + +       A +  G
Sbjct: 64  IAATRLITGRPDGP--------RVLVLTTFDLDAHVFDALRAGASGFLLKDVHAAELLRG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +    A + +          +   LT RE   L  ++ G  +
Sbjct: 116 IRIVAAGESVLAPSATRRLLRHYAGRPSSGIETGRVPAELNRLTARERSVLGLLASGLDN 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  LGI+  TV +++ +++RK A + R  A   A    +
Sbjct: 176 TEIAADLGITVGTVKSHVNAVLRKLALRDRVQATILAYDLGL 217


>gi|196230226|ref|ZP_03129089.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225823|gb|EDY20330.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 211

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 30/233 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  +V+  +D      +  +   +  +  +  +         +                 
Sbjct: 2   QKTVVIVEDDRALREELIRILNTAPDIVCLGAVGSAEDALQVIPR--------------- 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +          +L     +   V+    +        
Sbjct: 47  RPPDTVLMDIKLPKMSGIECTAELKK--------ILPHLQIIMLTVYEESTQIFRALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +    R+   +  +   G  +          +A      F        +   L
Sbjct: 99  ASGYLLKSSPPQRLFAAIRDVQEGGAPLSSH-------IARQVVQHFHEEGRLARESHHL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + RE E L  ++ G    EIA  L I   TV  ++ +I  K   ++R  A+A 
Sbjct: 152 SPREAEVLELLAAGYIYKEIADRLQIGLETVRTHVKNICAKMHVRSRVEAVAR 204


>gi|157961776|ref|YP_001501810.1| response regulator [Shewanella pealeana ATCC 700345]
 gi|157846776|gb|ABV87275.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 214

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRILEDERGIKVIGEAGD---------------GETAVQWCRKN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 47  EADVILMDMNMPGIGGLEATRKILRFQ--------AHAKIIVLTIHTEDPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L         +           L+
Sbjct: 99  SGYLTKGATSPEVLQAIRQVAHGQRYLSPEIAQQMAL--------SQFNQSEDNPFKTLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+   EI+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMLMITNGEKVSEISEQLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRYKML 209


>gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 200

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 55/189 (29%), Gaps = 26/189 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV+        +D  +      +    +                 +    F   
Sbjct: 36  GKDAVKLVKLHRPDICIMDIEMPMMNGLEAAEELKGYG----------CKVMILTTFARP 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      N Y         +   +  +    RI   + + E               
Sbjct: 86  GYFERAVKAGANAYLLKDSPSEELAASIRSIMAGRRIYASELVDEAY------------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G++  LT RE E L+ I++GK + EIA  L I+  TV NYI+ I+ K     R  A
Sbjct: 133 ---SGEENPLTEREKEVLSLIADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIEA 189

Query: 237 IAYAVRNNI 245
           I        
Sbjct: 190 ITRFKEKGW 198


>gi|227329494|ref|ZP_03833518.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 210

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 35/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L     +   +                    G     L   D 
Sbjct: 8   RVLIVDDHPLMRRGIRQLLATDAIFDVIGEASN---------------GMEALSLANRDS 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     +         +
Sbjct: 53  PDIILLDLNMKGLSGLDTLHALRRDGIC--------ARVIVLTVSDAPSDIYALMDAGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +      G                       +          LT 
Sbjct: 105 GYLLKDSAPEHLLDAIR----NGDAFSEQVR--------DVLRHRIAIQDTPSPFTVLTE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE++ L  ++ G ++ +IA +L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 153 RELDVLQEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAATVLYLE 206


>gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16]
 gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 235

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 25/231 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGA------------SHFLLVRWDLFQEQKLDSIVS 79
           L A ++ ++       R+  +   +G                 L+    F    +D  + 
Sbjct: 13  LPAPLLVVEDEPLMQTRLRTILATLGYAEEALWFAGSLADANALLTAQPFAMVLVDVGLP 72

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVA 138
                DL+R +           L                 I +        Y     D  
Sbjct: 73  DGNGIDLIRALHE-----RDPALPTLVIST----WNTERVIVSALQAGATGYLLKERDDL 123

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLT 195
            I + +      G  I       I  L A  A +     +H  +      L+ RE+E L+
Sbjct: 124 EISLSIRSALRGGAPIDPFVARHILDLVATTAPLPGGAQIHARRLVGASPLSAREIEILS 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +G T+ EIA +L +SR TV  +I +I +K A  +R+ A+  A  + ++
Sbjct: 184 LVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHSRTQAVFEARAHGLL 234


>gi|71907032|ref|YP_284619.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71846653|gb|AAZ46149.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 216

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 31/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ ++L  +       +  +   ++ L  +            +       G +  +LV
Sbjct: 1   MEKIKVLLADDHTIIRDGLKQILADTEDLVVLGEAANGNDVMHLIR------GQNWGVLV 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      DL+R +   +             L   + H     +    
Sbjct: 55  ---------LDISMPGRSGLDLIRMIKDEK--------PSLPILILSMHHEEQYALRAIH 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y +   D   +   +  +   G  I       +               +      
Sbjct: 98  AGASGYVTKESDSDLLVTAIRRVAAGGVYISEKVAELMV--------RDIRPAMAPLPHT 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE +    +  GK   EI   L +S  T++ +   I++K      +  I YA+ + 
Sbjct: 150 LLSDREYQVFNMLVMGKGLTEIGAELSLSVKTISTHKTHILQKMNMTNAAELIRYAIAHG 209

Query: 245 I 245
           +
Sbjct: 210 L 210


>gi|298241134|ref|ZP_06964941.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554188|gb|EFH88052.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 220

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   ++    M  + E   G      +         LD  +     
Sbjct: 5   RLFLVDDHRIVREGLASMLATQADMQVVGEASTGDEALARMGEVRPDILLLDLEMPGLDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             ++  +           L     +    + +    +       + Y      +  +   
Sbjct: 65  VSVLERVRTD--------LPSIRTIILTAYGSDQRILDAVRAGAHGYLLKGAGLDEVLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++   G ++       +                       LT RE   LT++++G ++
Sbjct: 117 VRVVAAGGSLLEPAVTERLLG----SMEQLLRSGSIAE---MLTERERMILTYMAQGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   L ++  TV  +   + +K     R+ A+A A++  ++
Sbjct: 170 KMIGQELHLAERTVKFHTTILFQKLQASNRAQAVAKALQERLI 212


>gi|26988850|ref|NP_744275.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24983655|gb|AAN67739.1|AE016405_2 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 219

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L         +   D       ++  L                
Sbjct: 4   RLLLVDDHSLIRAGVRALVCDIPGYDVVGEADDGNQLLDQVRTLA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +  S              L   +       +       +
Sbjct: 49  PDIILLDISMRSTSGLDALTQLRASGST--------CKVLILSMHTDPDLIMRALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +    R +          +        K      G+   LT 
Sbjct: 101 GYLLKDTSATELEQALGAVRHGERYLSPAIA---HTVINQALRHTKQGKPSAGERHNLTS 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|311896491|dbj|BAJ28899.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 31/242 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  +VL  +     + V     R+D    +  +         +  + E            
Sbjct: 13  RARVVLVDDHRMFRTGVRAEIGRTDETG-IDVVGEADDVESAVRVVAET----------- 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +++R                   L   V     + I    G 
Sbjct: 61  -KPDVVLLDVHLPGGGGVEVLRR---------SAGADGVRFLALSVSDAAEDVIGVIRGG 110

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-- 184
              Y + T     +   +  +     +           LA +  + F + D     +   
Sbjct: 111 ARGYVTKTITGTDLVKAIFRIADGDAVFSPR-------LAGFVLDAFAATDTPPVDEDLD 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 164 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARR 223

Query: 245 IV 246
           +V
Sbjct: 224 LV 225


>gi|196234323|ref|ZP_03133152.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196221590|gb|EDY16131.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 25/230 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
            R+   + +    D       L  ++S    +  + E   G     +          +D 
Sbjct: 1   MRSPTNTRILIVDDHFIARKGLIGSLSAEPDIEIVAEANNGFQAVEMFVLHRPDLVLMDV 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +             +       V     + +         Y   + +
Sbjct: 61  RLPLQDGVQAARTIRNDH--------PQARIAMLTVSDAEEDILGAIDAGVVGYLPKSVE 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  L   G     +   ++                       LT RE E LT 
Sbjct: 113 REQLLTAIHRLAEGGEYFAPEIEAKL----------------RSTNRVSLTKRETEVLTQ 156

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I +G+++ EI   LGI+  TV  ++  + +K     R+ A   AV+  +V
Sbjct: 157 IVKGRSNKEIGYDLGIAEPTVRLHLTHLFKKLHVMDRTQAAMVAVQRGLV 206


>gi|310821461|ref|YP_003953819.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309394533|gb|ADO71992.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 218

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 16/231 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   PT    L +++     +             G      +     Q   LD
Sbjct: 2   DRTRVYVVEDQPTLLKNLVKVLGTFEELEVVGTCQ-----DGELAVEDIVQVRPQIVLLD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +       + + +           +     L    F    +         + Y     
Sbjct: 57  LELPGLNGIQVTQRVKRR--------VSNVEILILTSFEDEQKVYEAIQAGASGYLVKRV 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              +IR  +  +   G ++             Y  ++           + LT  E E L 
Sbjct: 109 GPEKIRSSIREVMEGGTVLEPIIAKRFW---NYFHSLQAKPAGKPENPWGLTPAEFEVLR 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++G ++ E+  ++ + R TV  +++ I RK    +   A+  A++  +V
Sbjct: 166 YVAKGLSNAEVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAGVV 216


>gi|149375328|ref|ZP_01893099.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149360364|gb|EDM48817.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 213

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 63/229 (27%), Gaps = 19/229 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            +  V  +    D +  +  +   +     +  + +   G      V+        +D  
Sbjct: 3   TSESVVKVMLVDDHILVLEGIRARLEQEKGIDVVGQATDGLEALERVKDLKPDVIMMDVS 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    +  +       D           L   +                 Y      V
Sbjct: 63  MPNMNGIETTKIFQERYPD--------LKVLILSMHDNREYISQLMFHGAKGYILKDVSV 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      I R     +          F+  +     + +LT RE   L+ +
Sbjct: 115 EEMVSAIRTVADGATYICRAATETL----------FRHGETMEPVESKLTPREEAILSRV 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  S  I+  L I   TV  +  +I  K    T +    YA    ++
Sbjct: 165 AKGLNSKAISNELNICVRTVETHRQNIKSKLDLNTTAELTKYAYDQQLL 213


>gi|15601439|ref|NP_233070.1| transcriptional regulator UhpA [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121585560|ref|ZP_01675356.1| transcriptional regulatory protein UhpA [Vibrio cholerae 2740-80]
 gi|153818102|ref|ZP_01970769.1| transcriptional regulator UhpA [Vibrio cholerae NCTC 8457]
 gi|153820706|ref|ZP_01973373.1| transcriptional regulator UhpA [Vibrio cholerae B33]
 gi|227812249|ref|YP_002812259.1| transcriptional regulator UhpA [Vibrio cholerae M66-2]
 gi|229506156|ref|ZP_04395665.1| transcriptional regulatory protein UhpA [Vibrio cholerae BX 330286]
 gi|229509986|ref|ZP_04399466.1| transcriptional regulatory protein UhpA [Vibrio cholerae B33]
 gi|229516453|ref|ZP_04405900.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC9]
 gi|229605695|ref|YP_002876399.1| transcriptional regulatory protein UhpA [Vibrio cholerae MJ-1236]
 gi|254849842|ref|ZP_05239192.1| transcriptional regulatory protein UhpA [Vibrio cholerae MO10]
 gi|255746549|ref|ZP_05420496.1| transcriptional regulatory protein UhpA [Vibrio cholera CIRS 101]
 gi|262158861|ref|ZP_06029974.1| transcriptional regulatory protein UhpA [Vibrio cholerae INDRE
           91/1]
 gi|298499483|ref|ZP_07009289.1| transcriptional regulatory protein UhpA [Vibrio cholerae MAK 757]
 gi|9658099|gb|AAF96582.1| transcriptional regulator UhpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121550177|gb|EAX60191.1| transcriptional regulatory protein UhpA [Vibrio cholerae 2740-80]
 gi|126511370|gb|EAZ73964.1| transcriptional regulator UhpA [Vibrio cholerae NCTC 8457]
 gi|126521749|gb|EAZ78972.1| transcriptional regulator UhpA [Vibrio cholerae B33]
 gi|227011391|gb|ACP07602.1| transcriptional regulator UhpA [Vibrio cholerae M66-2]
 gi|229346334|gb|EEO11305.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC9]
 gi|229352431|gb|EEO17371.1| transcriptional regulatory protein UhpA [Vibrio cholerae B33]
 gi|229356507|gb|EEO21425.1| transcriptional regulatory protein UhpA [Vibrio cholerae BX 330286]
 gi|229372181|gb|ACQ62603.1| transcriptional regulatory protein UhpA [Vibrio cholerae MJ-1236]
 gi|254845547|gb|EET23961.1| transcriptional regulatory protein UhpA [Vibrio cholerae MO10]
 gi|255736303|gb|EET91701.1| transcriptional regulatory protein UhpA [Vibrio cholera CIRS 101]
 gi|262029434|gb|EEY48085.1| transcriptional regulatory protein UhpA [Vibrio cholerae INDRE
           91/1]
 gi|297541464|gb|EFH77515.1| transcriptional regulatory protein UhpA [Vibrio cholerae MAK 757]
          Length = 208

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +         + L + +      +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAF----YALTQAE-VDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A+++ ++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQLL 205


>gi|154251588|ref|YP_001412412.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155538|gb|ABS62755.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 213

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 73/242 (30%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++   L  +       V  +    + ++ +       S    +  L            
Sbjct: 1   MRKIYTYLIDDHHVLRQAVVEMLEAEEDISVIGQSGDARSGIGEIANL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +  +             +   +   ++           
Sbjct: 49  ---KPDVAILDLKMPGMTGLAAIGEILR--------AAPKTGIIIFTMYDNPAYVWETTN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +     +   +  +   G  +  +    +                  G+  
Sbjct: 98  AGASGYVLKSASKEDLLRAVRAVHAGGGYLQAEVTKPL-------LRRLAQDARTSGQKA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L  +++G+++  IA  L I+ +TV  ++ S+  K     R+ A+A ++R  
Sbjct: 151 TLTSRELQVLECLADGQSNKMIAQTLSITEDTVKAHLKSLYEKLGASDRAHAVAISLRQQ 210

Query: 245 IV 246
           ++
Sbjct: 211 LI 212


>gi|167949597|ref|ZP_02536671.1| response regulator [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 181

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              D      +D  +      +  R +          +      +   +    P      
Sbjct: 8   CSSDRPDVVLMDVNMPGIGGIEATRRLLR--------IAPDLKVVALTMLDNEPFPARLN 59

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y +       +   +  +F     +  D   +  L    + +            
Sbjct: 60  EVGAMGYLTKGCPADEMIQAIRSVFRGQPFVSSDVARKHILTDWKRHS--------ATPF 111

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE + +  I EG+ + EI+  L +S  TV+ Y   I  K   +        A R+
Sbjct: 112 QGLSSRETQVMLMILEGQRNQEISDGLSLSPKTVSTYRQRIYEKLDVRNDVELTRLAYRH 171

Query: 244 NIV 246
            I+
Sbjct: 172 GIL 174


>gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 218

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 16/224 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G +   L          +D  
Sbjct: 3   IRVVVADDQDLVRAGLVMILGAQPDLEVVGEAED-----GLAALELATRLRPDVLLVDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++ R +A         V+          F      +         +       
Sbjct: 58  MPGLDGVEVTRRLAGPGVTDPMAVV------VITTFDLDEYVLGALRAGARGFLLKDAGP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +I  +    +  LA +                 LTGRE E L  +
Sbjct: 112 ELLVRAIHAAAEGDALIAPNVTRRL--LATFADQAPAVPVQPIDP---LTGREEEVLALV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + G+T+ EIA  L +  +TV  ++AS+M K   + R     +A 
Sbjct: 167 ARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVEIAMWAY 210


>gi|226227636|ref|YP_002761742.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090827|dbj|BAH39272.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 223

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 65/223 (29%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G +   L    +     LD  +  +  
Sbjct: 12  RVLIADDHALVREGLRYVLDADPGIEVVGEASNGRTAVDLALQHVPDVVVLDITMPEESG 71

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L   +               + Y         +R  
Sbjct: 72  LKAAARLRE--------ALPDTRVLLLSMHDQGEYVREGMRIGTHGYLLKDSAGEELRAA 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G       +  +       +    S      +   LT RE + L  ++ G T+
Sbjct: 124 IRAVHAGGTFFSPAVVRRLT------STEVVSEGAPAAQLDLLTPRERDVLAGVARGLTN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  LGISR TV  +  S+MRK    + +G   +A+   I+
Sbjct: 178 KAIAAELGISRRTVEAHRESLMRKLQIHSVAGLTRFALETGII 220


>gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 77/222 (34%), Gaps = 19/222 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +      +    G      +R         D ++     
Sbjct: 5   KRLLLIDDDPNLILLVKDYLEFRGY-EVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V+ +  +    +  V+               + +       + Y    F+   +   
Sbjct: 64  YTFVQTIRSNSATDWIPVIFLSARGQ------TADRVRGLNTGADVYLVKPFEPEELVAQ 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +L+              N      +   ++ ELT  E + + +++ G ++
Sbjct: 118 VESVLKHTERLLQ------------MQNAVIQPVIKLDREIELTPTEAKVIQYVARGMSN 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA ++G+S+ TV +++++++ KT    R+    +A+ + +
Sbjct: 166 REIAEVMGVSQRTVESHVSNMLSKTGLHNRTELARWALESGL 207


>gi|319648166|ref|ZP_08002383.1| YfiK protein [Bacillus sp. BT1B_CT2]
 gi|317389801|gb|EFV70611.1| YfiK protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  ++      +  + +  D    +  ++                G       R 
Sbjct: 20  KIKVIIADDNSFIREGMKIILSTYDEFEVLATVED---------------GLQAVEFCRA 64

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + +    +  R ++ +    +              F      +      
Sbjct: 65  QAVDIALLDVHMPNMDGVEAARLISETGAKPF----------ILTTFDDDEYIVAAIRNG 114

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y     +  RIR  +  +F    ++         ++     +    +     K  E 
Sbjct: 115 AKGYLLKNAEPERIRDAIKSVFNGHIVMQD-------IILDKIKSNLAEHKEAEPKIDES 167

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             T RE+  +  I+ G ++ EI+  L IS  T+ NYI+SI+ KT  + R+    Y
Sbjct: 168 LFTERELGIMALIARGLSNKEISKELFISEGTIANYISSILGKTGLEHRTQIAIY 222


>gi|307824147|ref|ZP_07654374.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307734931|gb|EFO05781.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 218

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +++++L  +     +      + SD + ++   D                G +   +   
Sbjct: 4   KISVLLVDDHAVVRTGYKAYLSLSDKIGQIYEADR---------------GEAACQMYNQ 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +     F+ +R                   L   + + L       A  
Sbjct: 49  HQPDIVVTDLSMPGIGGFESIRR-----LLNRDP---HCKILVFSIHNELVYVTRALAAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +       +   +  +   G  +  D       +A   A           K   L
Sbjct: 101 AKGYITKNSMPETLITAVYKIAQGGTYVDPD-------IAQQLAVSMAGEQDESEKIKTL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE +    ++ G T  + A  L +S  TV N+   I  K   +T +     A R  ++
Sbjct: 154 SPREFDVFCLLANGYTVRKAAEKLCLSYKTVCNHGTVIKEKMGAETLAELTLLASRQGLI 213


>gi|326771911|ref|ZP_08231196.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326638044|gb|EGE38945.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 233

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 18/230 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
              R+  +D           + +       VG +   +    + +  + D ++       
Sbjct: 3   RTLRIALVDDQDLVRSGFRMILDAQKDMCVVGQASDGVGVLPMVKATQPDIVLMDIRMPT 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L    A       +  L+         F      +       + +         +  G+ 
Sbjct: 63  LDGISATRAVLGSHPDLKVL---ILTTFDLDDYLVAAMRAGASGFLLKDSTAHELLAGIR 119

Query: 146 LLFPKGRIILRDRLWEIG---------LLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            +     ++       +                 +   +   H      L+ RE E +T 
Sbjct: 120 AVARGDSVVAPSATRRLLKRWFAPAGSTAGPAGPSEPGAGTAHTESIDALSDREKEIVTL 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    ++ EIA  L ++ +T+ +++  I+ K   + R+  I  A  + +V
Sbjct: 180 VGRAMSNTEIAQHLVLAESTIKSHLNRILHKLELRDRAQLIVLAYESGLV 229


>gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 226

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +       D L  +           ++ ALT   G          
Sbjct: 14  IRILLVDDHAVVRQGLRFFLEPDDGLVVVGEARDGEEALQQVAALTAAGG---------- 63

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         R +        Y  ++                        
Sbjct: 64  GPLVVLMDLLMPVKDGVAATREIKA-----RYPEVEVLAITS---VLEDRLVAGAVQAGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +         +  +    +           +S      ++  LT
Sbjct: 116 TGYLLKDTDAEGLVEAIYAAARGEVRLHPEAAKRL----------LRSVRTSDMREA-LT 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I  G+++ EIA  LG+S  TV  +++ ++ K    +R+ A  +A++  +V
Sbjct: 165 ARETDILRHIGRGESNKEIAAALGLSELTVKTHVSRLLSKLGLASRTQAALFALKEGLV 223


>gi|226310338|ref|YP_002770232.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093286|dbj|BAH41728.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 62/196 (31%), Gaps = 22/196 (11%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       + +      LD  + +    +  R +                 L    F   
Sbjct: 37  GVEAVTFCKQNEVDVALLDVRMPNMNGVEATRVLTTETT---------VKPLILTTFDDD 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D  RIR  +  ++    ++    L +I +      N   + 
Sbjct: 88  EFVLEAIQAGARGYLLKNNDPNRIRDAIKSVYNNHHVLQDVVLDKIKMNLNTGRNAADTV 147

Query: 177 DVHWGKDFE-------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                                  T RE++ +  I++G ++ EIA  L IS  TV NYI S
Sbjct: 148 STSPSPKATAGIPTESKIDKSLFTERELDVMKQIAKGLSNKEIAKKLFISEGTVANYITS 207

Query: 224 IMRKTATKTRSGAIAY 239
           I+ KTA + R+    Y
Sbjct: 208 ILNKTALEHRTQIAIY 223


>gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 213

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 32/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              Q + + +  + E   + + H+         +                    G S   
Sbjct: 1   MSWQPLRVAIIDDHEIVRNGLKHILADDPDFLVVGEAAD---------------GPSGVA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +V         +D  + S    D+ R +           +     L    F         
Sbjct: 46  MVDAVRPDVVIVDVRLPSMQGDDVCRLIRER--------VPETRILILSAFGEDELVYRC 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         ++  L ++     ++           A+      ++       
Sbjct: 98  VLAGAQGYVLKDIVHFDLKKTLKMIARGEAVLDPRV-------ASVVVERLRNRKAI--T 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+  ++  L  I++G ++ EIA  L +S NTV  Y+  ++R+   + R  A+  A  
Sbjct: 149 DIPLSPHQLSVLRLIAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNRLEAVMIANE 208

Query: 243 NNIV 246
              +
Sbjct: 209 RGWL 212


>gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 239

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 13/224 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QEQKLDSIVSSDWPFDLVRCMA 91
              +   D       R+ A    +G   F+L       ++            F     + 
Sbjct: 13  ALAIEGGDSLSVIQDRIRAFAGPLGYDRFVLFTASAAREDVVERIYWVEGDWFGTGEAVD 72

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENIT---------PPAGMDNRYCSLTFDVARIRI 142
                +   V +   E+  P F T   + +         P     +      F  + +  
Sbjct: 73  ALTYIRRCPVNRHILEVSEPFFWTKTRSESGELYQVVRTPRGRGVHGLQIPIFGPSGLEG 132

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEG 200
            + L   +           + L+        +             L+ RE E L W + G
Sbjct: 133 AMSL-GGERIDASPQARLALSLVGTAAFLSARRLLEAPNSSATAKLSHREREILAWTAAG 191

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +   +IA  LG+S  TV N++  I R+ A  T + AI  A+RN 
Sbjct: 192 RRQADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNG 235


>gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 207

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 21/226 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L  ++ +D  +             G     L          +D  
Sbjct: 1   MRIVIVDDDRLVCSSLKVILEMDSEIKV-----EAIGNDGREAITLYEKYTPDVLLMDIR 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +S+    D    + +          +    LF   F      +         Y     D 
Sbjct: 56  MSTMSGIDAAEKILVKH--------KDAKILFLTTFSDDEYIVKALKIGAKGYLLK-QDY 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I+  L  +     +   D + ++        ++ +         ++LT +E E LT +
Sbjct: 107 DSIQPALKAVSMGQSVFGSDVITKLP-------DLMQKKKEFPYGAYQLTKKEYELLTMV 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +EG ++ EIA ++ +S  TV NY++++M K   + R+ A  +  + 
Sbjct: 160 AEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVRDRTQAAIFYYKQ 205


>gi|295836117|ref|ZP_06823050.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197695212|gb|EDY42145.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 259

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 68/262 (25%), Gaps = 46/262 (17%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + +  ++ L   +             G     LV         +D  
Sbjct: 3   ARVVVADDQSVVREGIVMLLGLLPGIEVVGSAR-----DGEEAVRLVGELGPDVVLMDLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +                 +    +    +           Y +     
Sbjct: 58  MPRCDGVEATHRIRAEHPGTQ--------VVVLTTYADDQDLFPALRAGARGYLTKDAGG 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------------ 185
           A I   +  +      +       +    A +    +      G+  E            
Sbjct: 110 AEIVRAIEDVLSGEAGLAPGIQRRLLDRIAGEGPADERGRAAPGRSGEDTAGADRGAASG 169

Query: 186 ---------------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                                LT REVE L  I++G ++ +IA  L +S  TV  +I ++
Sbjct: 170 AAASRPRGLQKDGAGTVPPDGLTAREVEVLVLIAQGLSNADIARALHVSAATVKTHINNL 229

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   + R+ A+ YA  + +V
Sbjct: 230 FAKAGLRDRAQAVRYAYLHGMV 251


>gi|117919601|ref|YP_868793.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117611933|gb|ABK47387.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 79/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + +     ++ L   S  +      +       R+                 D
Sbjct: 18  IRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQT---------------D 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L++ +  ++      V+          F      +       
Sbjct: 63  AVDVLLSDIRMPVLDGISLLKQLRAAQNSI--PVI------MLTTFDDSELFLNSLQAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N +      + ++   +  +   G +I    L ++       ++              L+
Sbjct: 115 NGFLLKDVSLDKLLEAIETVAQGGHLIEPSVLEQMQQ-----SSATAQSGPTHD---LLS 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L +++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   ++ +++
Sbjct: 167 EREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225


>gi|289669083|ref|ZP_06490158.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 213

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 23/224 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   ++    M  + E   G                +D  +    
Sbjct: 8   TEVLVVDDHPLLRDGLSAMLAAEQDMRVVGEAEDGEQAVACYTRLRPDVVLMDLQMPGVD 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +          V      +    +      +         Y   +     +  
Sbjct: 68  GVEAIQRIRR--------VDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVD 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R  +   + E   +AA+  +              L+ RE E L  ++ G +
Sbjct: 120 TIRGVRRGQRRQVPAAVAEN--IAAHVLDDA------------LSARETEVLNLVATGCS 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L IS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 166 NKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRRGIL 209


>gi|238760511|ref|ZP_04621646.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
 gi|238701263|gb|EEP93845.1| Two component transcriptional regulator, LuxR family [Yersinia
           aldovae ATCC 35236]
          Length = 209

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 72/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + +          A+++ L+  +       +  E       + +         +D  + 
Sbjct: 4   VALIDDHIVVRSGFAQLLSLENDICIIGEYGSAAEAW-----MELPDKNVHVAVMDISMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L++ +           +     +   ++ T     +      + Y +       
Sbjct: 59  DESGLSLLKRLRQK--------MPHFRAIILSIYDTTAFVQSAMDAGASGYLTKRCGPHE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +   G  +  D L  +           +       +   LT RE E    +  
Sbjct: 111 LVQALRTVNGGGLYLCADALRAL-----------RHMPQQPQQLAILTPREKEVFQLLIN 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 160 GISVKNIAEQLLLSHKTVHVHRANILGKLNCETTVELVHFALQHQLL 206


>gi|186475902|ref|YP_001857372.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184192361|gb|ACC70326.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 214

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +          E   G +   L+R    Q   LD  +      
Sbjct: 4   VLLADDHALVRDGLRHILQSASGFEVAGEAWDGITTIALIRSTPAQVLVLDLTMPGRNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L+R +   +             L   +       +       + Y +       +   +
Sbjct: 64  ELIRQIKDEQ--------PALRILVLTMHAEQQYAVRAFKAGASGYLTKESASVELVNAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  I       +       A               L+ RE +    I  G++  
Sbjct: 116 TKIAGGGVYISLAMAERLAQTLNEPAEAL--------PHQRLSDREFDVFRRIVAGQSIT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV+ +   ++ K      +  + YA+R  ++
Sbjct: 168 EIAHELCVSVKTVSTHKTRVLEKMQLPNENALVRYAIRYKLI 209


>gi|118466851|ref|YP_883258.1| DevR family transcriptional regulator [Mycobacterium avium 104]
 gi|254776535|ref|ZP_05218051.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118168138|gb|ABK69035.1| two component transcriptional regulatory protein devr
           [Mycobacterium avium 104]
          Length = 222

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L +    L  +           R+ A                
Sbjct: 2   VKVFLVDDHEVVRRGLCDLLSSDPDLRIVGEAGTVAEAKARIPAA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 47  RPDVAVLDVRLPDGNGIELCRDLLSEHPDLRC--------LMLTSFTSDEAMLEAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +           +           LT
Sbjct: 99  SGFVIKDIKGMELARAIKDVGAGKSLLDNRAAAAL-------MAKLRGSAAQADPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A + N
Sbjct: 152 EQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKLN 208


>gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR
 gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri]
          Length = 229

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 70/226 (30%), Gaps = 30/226 (13%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +    E   +  +  +  D   +  +D  + + +P +               ++    + 
Sbjct: 1   IDRKLERYDSPRYTYMVIDK--KNPVDVFIVTSYPDEWADIYTSQNYQHIDPIVLTAFKR 58

Query: 109 FCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI--- 153
             P                    ++    + N +  +  D       L L+         
Sbjct: 59  ISPFAWDENITILSDLKSSKIFALSKKYNIVNGFTFVLHDHMNNLAMLSLIMDNNADKGL 118

Query: 154 --ILRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFE------LTGREVECLTWISEG 200
              +      + +                  V  GK+ +      L+ RE E L W S G
Sbjct: 119 NSRIESDKDRLQMNLIKIHEKMLMLEQNKLGVSNGKNTDTSGKGILSPRENEVLHWASMG 178

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT  EIA+I GI+  TV +++ ++++K        AI   V   ++
Sbjct: 179 KTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAIRLGVELELI 224


>gi|153825393|ref|ZP_01978060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|255746365|ref|ZP_05420312.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262158280|ref|ZP_06029397.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262169155|ref|ZP_06036848.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262192074|ref|ZP_06050237.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|149740939|gb|EDM55016.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|255736119|gb|EET91517.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262022436|gb|EEY41144.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262029962|gb|EEY48609.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262032056|gb|EEY50631.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|327485870|gb|AEA80276.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 239

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCM 90
           L++++       +    +     + G    +        +  ++ I       FD    +
Sbjct: 9   LISQLEESHSFSTVQDIVRQRAHFYGYDKIVFFSAHSTLDGIIERIYWIEGDWFDDGENI 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH--------TLPENITPPAG-MDNRYCSLTFDVARIR 141
             +   KY  + +   E   P F              +  P G   +      F    + 
Sbjct: 69  DAATYIKYCPITRHIIETDRPFFWTKKPDVNREQYRVVAKPKGSGIHGLQIPIFGHLGLE 128

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISE 199
             + L   K          E+ LL+ Y     +         +   L+ RE E L+  + 
Sbjct: 129 GAVSL-GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTAL 187

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G+   +IA+ LG+S  T+ N++ +   K    T +  I  A++  
Sbjct: 188 GRRQADIAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRG 232


>gi|315038871|ref|YP_004032439.1| two-component system response regulator [Lactobacillus amylovorus
           GRL 1112]
 gi|312277004|gb|ADQ59644.1| two-component system response regulator [Lactobacillus amylovorus
           GRL 1112]
          Length = 227

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 3/179 (1%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +   + K D I+       +   +      + Y  ++    +    F       +   
Sbjct: 39  ALESIAKNKPDIILMDVRMPVMDGTVCTKYVKEKYPDVK---VIILTTFDDDDFIFSALK 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I   +  ++  G +I  +   ++  L +  A    S  V   +  
Sbjct: 96  YGASGYLLKGGSPQDIFQAIRTVYAGGAMINPNITEKVFKLFSKMAQTNYSISVDQTEIQ 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+  E   +  +  G ++ EIA  L +S  TV NYI+ I+ K   + R+    +AV++
Sbjct: 156 NLSHSEWLIIQQVGFGLSNKEIAAKLFLSEGTVRNYISKILDKLQLRDRTQLAIWAVQS 214


>gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 212

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 15/198 (7%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +    E VG    L          + D +V            ++          +     
Sbjct: 18  VDRGLELVGIHSTLADGMAAVGTVQPDLVVLDHRLPGDTGAGSVRALKSRSPRTRILM-- 75

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                      +       + + +    +  +   +  +      I  D +  +      
Sbjct: 76  -LTAADERSVLLEAMDAGCDGFVTKRQHIGEVLAAVTAVLRGDTPISPDMVGAL------ 128

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A+  +          +LT RE E L  +  G+++ + A  LGIS +TV N++  I+ K 
Sbjct: 129 IASRPRPPGG------DLTPRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKL 182

Query: 229 ATKTRSGAIAYAVRNNIV 246
              ++  A+A A R  ++
Sbjct: 183 GAHSQLEAVAIASRLGLL 200


>gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 196

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA               LD  +      D +  +           +   T    P     
Sbjct: 24  GADAVAKNHECKPDLVLLDLNMKGMSGLDTLNALRADG---CDATIVILTVSDSPA---- 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         + Y     +   +   L +     +   ++        A Y A+   S 
Sbjct: 77  -DIEAIVKAGADGYLLKDTEPDELVELLKVSLRGNKAYSKEV-------AKYLADRENST 128

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV      ELT RE++ L  +++G  + +IA  L IS +TV  ++ S+++K +  +R+ A
Sbjct: 129 DVFD----ELTDREMQILKEVAKGYRNKQIADTLFISESTVKVHMKSLLKKLSVPSRTAA 184

Query: 237 IAYAVRN 243
               +  
Sbjct: 185 TVMYLER 191


>gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 217

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 15/224 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +        + +   G   ++ V         +D  +    P 
Sbjct: 4   VLIADDHAIVRSGIAYLIDKQPTFQVVGQTANGTDTYMRVEQGDIDILIMDLSM----PP 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +      K+Y +++    +   +                 Y   +   + I   L
Sbjct: 60  GESGLITAQRIHKHYPLVR---MIILSMHEEQEYINKAIHNGAMSYVLKSSPDSEILRAL 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKT 202
             +      I      E   L     +   S  V         L+ RE E    ++ G T
Sbjct: 117 TQVSNGENYID-----ENITLTKKDLSQINSDGVDVNLTGYNSLSKREREVFPLVALGYT 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  + A+I+RK   +TR+  + YA+ ++++
Sbjct: 172 NKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHHLI 215


>gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 217

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +       +  L      +  +           R  AL            
Sbjct: 1   MSAVRVLLVDDQALFREALGTLLDARPEVEVVGEAGDGHQALERAAALA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         R + + +             L    F    +      
Sbjct: 50  ----PDVVLMDLHMPVLDGIAATRRLRVEQ--------PGVRVLALTTFDDDEDVFAALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y        R+   +        ++      ++    A   +  +S         
Sbjct: 98  AGALGYLLKDVSADRLVEAVQAAARGESVLQPSVAAKVVARFAQLDDAPRSRPQPL--VV 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L  +++G+++ EIA  L ++  TV N++ +++ K   + R+ A   A   +
Sbjct: 156 PLSDRELDVLRLLADGRSNREIATALFLAEGTVKNHVTNVLGKLGARDRTQAALRARALD 215

Query: 245 IV 246
           ++
Sbjct: 216 LL 217


>gi|269955414|ref|YP_003325203.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304095|gb|ACZ29645.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 212

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 58/226 (25%), Gaps = 24/226 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSS 80
            V  +    D       L   ++    +  + E   G     L          +D  + +
Sbjct: 9   GVVRVLVVDDHPVVRSGLVGMLAVEPDLEVVGEAGDGVEAVRLAAELGPDVVLMDLRMPA 68

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                    +  +              L    + T  + +         Y         +
Sbjct: 69  LDGVGATAQIVGTGP----------RVLVLTTYDTDADILRAVEAGATGYLLKDTPRDAL 118

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+        ++       +                       LT RE + L  ++EG
Sbjct: 119 VRGIRAAAQGQTVLAPTVATRL-------------VGSVRASADRLTPREAQVLALVAEG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ E+   L I+  TV  ++     K     R+ A+  A R   +
Sbjct: 166 CSNAEVGRRLFIAEATVKTHLLRAFAKLGVDDRTAAVTEARRRGWL 211


>gi|22126326|ref|NP_669749.1| response regulator [Yersinia pestis KIM 10]
 gi|45441347|ref|NP_992886.1| response regulator [Yersinia pestis biovar Microtus str. 91001]
 gi|51596070|ref|YP_070261.1| response regulator [Yersinia pseudotuberculosis IP 32953]
 gi|108807239|ref|YP_651155.1| response regulator [Yersinia pestis Antiqua]
 gi|108812420|ref|YP_648187.1| response regulator [Yersinia pestis Nepal516]
 gi|145598551|ref|YP_001162627.1| response regulator [Yersinia pestis Pestoides F]
 gi|149366189|ref|ZP_01888224.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|153947332|ref|YP_001401222.1| response regulator [Yersinia pseudotuberculosis IP 31758]
 gi|162420825|ref|YP_001606521.1| response regulator [Yersinia pestis Angola]
 gi|165925942|ref|ZP_02221774.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938744|ref|ZP_02227299.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010891|ref|ZP_02231789.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211175|ref|ZP_02237210.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401001|ref|ZP_02306504.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420257|ref|ZP_02312010.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425765|ref|ZP_02317518.1| response regulator UvrY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024581|ref|YP_001721086.1| response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186895179|ref|YP_001872291.1| response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218928984|ref|YP_002346859.1| response regulator [Yersinia pestis CO92]
 gi|229896314|ref|ZP_04511484.1| response regulator protein [Yersinia pestis Pestoides A]
 gi|229897251|ref|ZP_04512407.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897979|ref|ZP_04513130.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902791|ref|ZP_04517908.1| response regulator protein [Yersinia pestis Nepal516]
 gi|270486580|ref|ZP_06203654.1| response regulator UvrY [Yersinia pestis KIM D27]
 gi|294503977|ref|YP_003568039.1| response regulator [Yersinia pestis Z176003]
 gi|21959306|gb|AAM86000.1|AE013847_10 putative 2-component transcriptional regulator [Yersinia pestis KIM
           10]
 gi|45436207|gb|AAS61763.1| response regulator protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589352|emb|CAH20974.1| response regulator protein [Yersinia pseudotuberculosis IP 32953]
 gi|108776068|gb|ABG18587.1| response regulator protein [Yersinia pestis Nepal516]
 gi|108779152|gb|ABG13210.1| response regulator protein [Yersinia pestis Antiqua]
 gi|115347595|emb|CAL20505.1| response regulator protein [Yersinia pestis CO92]
 gi|145210247|gb|ABP39654.1| response regulator protein [Yersinia pestis Pestoides F]
 gi|149292602|gb|EDM42676.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|152958827|gb|ABS46288.1| response regulator UvrY [Yersinia pseudotuberculosis IP 31758]
 gi|162353640|gb|ABX87588.1| response regulator UvrY [Yersinia pestis Angola]
 gi|165913358|gb|EDR31980.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922146|gb|EDR39323.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990235|gb|EDR42536.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166208355|gb|EDR52835.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961952|gb|EDR57973.1| response regulator UvrY [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049390|gb|EDR60798.1| response regulator UvrY [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055164|gb|EDR64961.1| response regulator UvrY [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751115|gb|ACA68633.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
 gi|186698205|gb|ACC88834.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229680238|gb|EEO76337.1| response regulator protein [Yersinia pestis Nepal516]
 gi|229689020|gb|EEO81085.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693588|gb|EEO83637.1| response regulator protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701237|gb|EEO89266.1| response regulator protein [Yersinia pestis Pestoides A]
 gi|262361838|gb|ACY58559.1| response regulator [Yersinia pestis D106004]
 gi|262366023|gb|ACY62580.1| response regulator [Yersinia pestis D182038]
 gi|270335084|gb|EFA45861.1| response regulator UvrY [Yersinia pestis KIM D27]
 gi|294354436|gb|ADE64777.1| response regulator [Yersinia pestis Z176003]
 gi|320015393|gb|ADV98964.1| response regulator protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 218

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +     + C         +                
Sbjct: 2   ISVLLVDDHELVRAGIRRILDDIKGIKVAGEMQCGEDAVKWCRS---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +      +  R +     D           +   +    P          
Sbjct: 47  VVDIVLMDMNMPGIGGLEATRKILRFSPD--------TKVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   + ++    R I  D   ++ L            +      F  L
Sbjct: 99  GGYLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMAL---------SQLEPPAETPFSCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 150 SERELQIMIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 199

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 60/218 (27%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   +     M  + +   G       +        +D  +      D  
Sbjct: 7   AEDQQMLLGALGSLLDLEDDMTVVGKGTNGQDAIDFAKKHPVDICLMDIEMPGKTGLDAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  ++                  F              + Y         +   +  +
Sbjct: 67  EELKGTDVKII----------ILTTFARSGYFQRALKAGVSGYMLKDSPSEDLASAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               ++   + + ++                 +  +  LT RE   L  +++GK + EIA
Sbjct: 117 MKGKKVYAPELMEDL-----------------YSDENPLTEREKSVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI+ I+ K   K R  AI  +     
Sbjct: 160 KELSIKSGTVRNYISIILDKLEVKNRIEAITRSKEKGW 197


>gi|332296786|ref|YP_004438708.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
 gi|332179889|gb|AEE15577.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 10/187 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L R  L     +D  +      + VR +           L     +    +   
Sbjct: 44  GIEAVALARQFLPHIIVMDVSMPEMDGIEAVRQIKNL--------LPETKIIMLSTYQED 95

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               +      + Y         +   +  L      I    + ++       A+     
Sbjct: 96  ELVRSALLAGASGYLLKDISPTELITAIRALKSGIMQISPGIIKKLVKERFTPASRPDPD 155

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  W K  ELT RE E  T +  G ++++IA  L ++  TV N +++I  KT  K R   
Sbjct: 156 DAPWLK--ELTNREREIATLLVTGYSNEQIAEKLHLAIQTVRNQVSAIYFKTGVKDRFEM 213

Query: 237 IAYAVRN 243
           I  A RN
Sbjct: 214 IRLANRN 220


>gi|320333040|ref|YP_004169751.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754329|gb|ADV66086.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 220

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 15/227 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S +  L      + R             + A     G     + R        +D  + 
Sbjct: 8   VSALRVLIVDDQPMVRQGLSLLLELLPGVVVAGQAANGQEALDVARHFAADVVLMDVRMP 67

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                   R                   +    F    + +       + Y     D+  
Sbjct: 68  VMDGAQATRAFHARGGPP---------VILMTTFDEPEDMVAGLQAGASGYLFKNVDIHE 118

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R+I       +    A  A    +          LT RE   L  +S 
Sbjct: 119 LHDAMRRVRAGERVIHPRVAQAVADAEAVDAAPGVTLQAP------LTAREQAILGALSA 172

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ +IA  LGIS  TV  +++++  K     R+ A+  A +  ++
Sbjct: 173 GASNKQIAQRLGISDGTVKTHLSNLFFKLGAANRTEAVYRARQLRLL 219


>gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D      +  +      L  +   +                G          
Sbjct: 1   MRILIVEDDPMMQLGLEQVLGDCPDLEIVGQAED---------------GYLAVEAALRL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +           L     +         E I   +   
Sbjct: 46  KPDLIVMDIGLPRLDGIAATQQIKEK--------LPDVRVVMLTSHTAETEIIAALSSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + YC     V R+   +         +       +        N+     V      +L+
Sbjct: 98  DAYCIKGASVERLLAAIAAAAEGATYLDPQIARTV------IENLKPPTPVSTASIGQLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + EG ++ EIA  L +S NT+  ++  IM K A   R  A   A+R  +V
Sbjct: 152 QRESEVLKLMVEGYSNPEIAAALYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 210


>gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + +++  +D      +         L  +   +                G       
Sbjct: 15  APPLRVLIVEDDPMMQLGLEQSLMAHPQLEIVGQAED---------------GYLGVQAA 59

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         + +           L     +      T  E I   +
Sbjct: 60  LQLKPDLVVMDIGLPRLDGIAATQQIKA--------ALPATHVVMLTSHQTETEIIAALS 111

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + YC     V R+   +         +          +A    +  K        + 
Sbjct: 112 SGADAYCIKGASVERLLSAIAAAVDGAAYLDP-------QIARRVIDNLKPPAPTSN-NA 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  + +G ++ EIA  L +S NT+  ++  IM K A   R  A   A+R+ 
Sbjct: 164 NLSARELEVLKLMVDGLSNPEIAEKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRSG 223

Query: 245 IV 246
           +V
Sbjct: 224 LV 225


>gi|297157182|gb|ADI06894.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 230

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 57/227 (25%), Gaps = 14/227 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  ++     +             G     L R        +D 
Sbjct: 15  RIRVVVAEDQLAVRAGLVLILRSAPDIEVVAEA-----ADGEQAVRLARELRPDLVLMDI 69

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +A  +             L    F                +     D
Sbjct: 70  QMPRLDGVSATREIAAEQLAD---------VLILTTFDLDEYVFGALRAGAAGFLLKDSD 120

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   +  +     +I       +    A       +          LT RE E L  
Sbjct: 121 AAGLLAAVRTVASGEGMIAPAVTRRLIAEFARPQYAPAAPTADPAALASLTPREREVLGA 180

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A   
Sbjct: 181 LGRGLSNAEIADHLAMAEATVKTHVSRVLGKLGLRSRVQAAVLAQEQ 227


>gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 189

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 63/211 (29%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +     
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQSGLDVAETLKKENS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|150376486|ref|YP_001313082.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150031033|gb|ABR63149.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 219

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 19/220 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + +   P   + ++R +                         + R        +D  
Sbjct: 5   IRVAVIDDHPLFREGVSRSLSEIDGFEIVAE-----GGSRDEAIAIARSHNPDVMLIDIS 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +             L+       V      +   V     +           Y       
Sbjct: 60  MPGG---------GLNAIPAILTVAPSQKIVMLTVSEANDDVAAALKEGAKGYILKGIGA 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +      ++         +            ELT RE E L  +
Sbjct: 111 RALADVIRTVASGESYVAPTLSAKLLT-----GQLLNPAPAKSNLVAELTRREQEVLHLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + G ++ +IA  L +   TV +++  IM K     R+ A 
Sbjct: 166 ASGMSNKQIARKLDLHEKTVKHHMTQIMAKLNVANRTEAA 205


>gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 209

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 70/242 (28%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + L  +       +S        +  +       S                    
Sbjct: 1   MSPIRVALVDDHSIVRRGLSAYLAAQPDIVVVGEAANGESALQMASTW------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D IV        +  +  + + K   ++     +    +      I    
Sbjct: 49  --------QADVIVMDVLMPGGIDGIETTRQLKR--LIPHTHIIILSGYADDARVIGALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y        ++   +        ++    +  I                      
Sbjct: 99  AGAITYIEKESQPEQLLEAIRGAMAGKAVLAPALMQRIL------------EAQTSKAAD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG T+ EIA  L +S  TV  ++ASI+RK     R+ A  YA+R+ 
Sbjct: 147 TLTEREREVLKLVAEGLTNAEIASRLTVSEETVKTHVASILRKLGLAHRTQAAIYALRHG 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain
           [Thiomonas sp. 3As]
 gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 223

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 72/238 (30%), Gaps = 25/238 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +     +    L   +    R+            +                 +   
Sbjct: 8   LVVDDLPAVRAGFVELLRENYPGVRIFEAGRMADAMQILQR---------------EPVD 52

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      +L+R +  +       V+         +F                Y
Sbjct: 53  LLLVDLGLPDASGLELIRTLTETRPQARSVVV--------TIFDDDDHLFPALQAGAFGY 104

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTG 188
                    +R  L  +      +       +     +      +   +  ++    LT 
Sbjct: 105 LLKDRPKIELRAQLRRIQDGEPPLSPSIARRMVQHFTHLHRTMSAPSSNLPQEEHIALTE 164

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  + +G T  EIAV LG+SR+TV +Y+  I RK    +R+ A   AVR  +V
Sbjct: 165 RESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISSRAEAALEAVRRGLV 222


>gi|183601991|ref|ZP_02963360.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682902|ref|YP_002469285.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190478|ref|YP_002967872.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195884|ref|YP_002969439.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218876|gb|EDT89518.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620552|gb|ACL28709.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248870|gb|ACS45810.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250438|gb|ACS47377.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178205|gb|ADC85451.1| Transcriptional regulatory protein [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793465|gb|ADG33000.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV----GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R+  +D    +   + A  +      G +  +    ++  + + D ++            
Sbjct: 10  RIAVVDDHEMFRAGVIATLQPYFTIVGQAADVPSAIEMIADTQPDVVLLDVHVPGGEGGG 69

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                 K      +   L   V  +  +  +        Y + T     +   +  +   
Sbjct: 70  GAEILRKSQPHAPQTAFLALSVSDSAQDVGSVIRAGARGYVTKTITGNDLIHSIEQVSDG 129

Query: 151 GRIILRDRLWEIGLL--------AAYQANMFKSYDVHWGKDFEL---TGREVECLTWISE 199
             +        +               +N   +       D EL   + RE E +  I+ 
Sbjct: 130 YAVFSPKLAGFVLSAFQGAPLSDGMDASNESAAGGDTVAHDAELDSLSTREQEVMRLIAR 189

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T  E+   L IS  TV  ++++++RK     R+    +A   +IV
Sbjct: 190 GYTYKEVGAELFISVKTVETHVSNVLRKLQLSNRNELTLWAADRHIV 236


>gi|83951937|ref|ZP_00960669.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           nubinhibens ISM]
 gi|83836943|gb|EAP76240.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           nubinhibens ISM]
          Length = 218

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 35/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              IV+  +       V  +    D +  +  L        ++  L              
Sbjct: 7   PTRIVIVDDHPMVAEGVEAILETYDDIEVVATLSDGQQIIDQVSQLA------------- 53

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +           +                 L   +  +     +  +  
Sbjct: 54  --PDVILLDLNMPGIGGLSTTEIILERR--------PATRILILSMHDSPEYISSALSHG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         I++ +  +    R +       +                  G   +L
Sbjct: 104 AMGYVLKDVPTDEIKLAIDAVMRGERYLCTGAQGSL------------EPQGGAGVREQL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  +++G+++ ++A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 152 TNREQTILLQLAQGRSNKDVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 211


>gi|310657820|ref|YP_003935541.1| two-component response regulator yhcz [Clostridium sticklandii DSM
           519]
 gi|308824598|emb|CBH20636.1| Two-component response regulator yhcZ [Clostridium sticklandii]
          Length = 213

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 27/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  ++   D      V  +   +  +  +   +                G      +  +
Sbjct: 2   IKTIVVDNDALIRDIVQKILEDNSQIELVHKAED---------------GFDALEYLEIN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++++ +                 +           +       
Sbjct: 47  KVDLVLLDIGMPKINGIEVLQKIKNL--------YPHIKVIMLTSCKDKEIVLKCLNLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S       I   ++ ++    +       ++  L     +  +       K  +LT
Sbjct: 99  DGYLSKDVGCEGIIDAILRVYDGEMVTFP----KVSDLIIEDMDYVRKQIEENTKSQKLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ ++ IS+G ++  IA  L IS  TV N+++SI+RK +   R+    Y + NNI
Sbjct: 155 KRELQVMSLISKGMSNKAIAKHLEISDKTVKNHVSSILRKLSLNDRTQIAVYTLSNNI 212


>gi|299134770|ref|ZP_07027962.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298590580|gb|EFI50783.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 62/238 (26%), Gaps = 34/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +  +    D LA +            + +                
Sbjct: 2   IRLVLADDHAIFREGLKQILAEHDDLAIVGEATNGQELLALLSS---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L+  +           +     +   +       I       
Sbjct: 46  PCDVVLLDLSMPGRSGIALLTDVVAK--------IGSGRVIVLSMHDEHQYVIESLKAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +      ++   +  +      I         L                     LT
Sbjct: 98  AGYVTKNSASQQLIQAIRKVANDEMFISATAAQSAAL----------KVQPEDEPHRRLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    + +G+   +IA  L +S  TV+ +  +I+ K    T    + YA+R+ +
Sbjct: 148 PREREIFDLLVDGRKISDIARKLDLSVKTVSTHKTNILLKFDAATVVDLVHYAMRHGL 205


>gi|312138083|ref|YP_004005419.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325675013|ref|ZP_08154700.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
 gi|311887422|emb|CBH46734.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325554599|gb|EGD24274.1| two component system response regulator [Rhodococcus equi ATCC
           33707]
          Length = 220

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      V+ +   +  +  +  +         + +L               
Sbjct: 7   ITVLIVDDDPFVRRGVADILEPAQDIVVVGCVSDGDEVPAAVASL--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   E             +           +   A   
Sbjct: 52  QPHVVLMDLKMRRTGGLEATRSLMELESPP--------KVIAMTAMDVDDLVVQAVAAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + S           + ++     +   + L     + +       S  V       LT
Sbjct: 104 HSFLSKDEAPLTFHQSVRVVASGNTLFSPEALRR---IVSESEGTAGSTPVVRPDLSRLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT ++EG+++ +I   L +   TV +++++I  K   + R  A   A R  +V
Sbjct: 161 EREREVLTVLAEGESNADIGRRLFLGETTVKSHVSAIFEKLGVRNRVEAALQAYRAGLV 219


>gi|302529224|ref|ZP_07281566.1| two component system response regulator [Streptomyces sp. AA4]
 gi|302438119|gb|EFL09935.1| two component system response regulator [Streptomyces sp. AA4]
          Length = 213

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  ++    S +  +      +  +                    G     LVR  
Sbjct: 2   LKILLIDDEVLVRSGIRMILESDPGIEVVAEAGD---------------GREALALVREH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++ R +           +          F              
Sbjct: 47  RPDLVLTDVQMPEVDGLEVTRLVTAE---PDAPAVV-----VLTTFDLDEYVHEALRHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + ++     ++       +            +      +   LT
Sbjct: 99  TGFLLKDTPPRELVKAMHVVGDGEAMLSPSITRRLLT----HFASAATPTSARTRLEPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    + +G ++ EIA  LG+S  TV  ++  IM KT    R+          +
Sbjct: 155 PREREVAVAVGQGSSNAEIARALGLSEATVKVHLGRIMAKTEAANRTQVAILVHDAGL 212


>gi|114046728|ref|YP_737278.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113888170|gb|ABI42221.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 78/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + +     ++ L   S  +      +       R+                 D
Sbjct: 18  IRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQT---------------D 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L++ +  ++      V+          F      +       
Sbjct: 63  AVDVLLSDIRMPVLNGISLLKQLRAAQNPI--PVI------MLTTFDDSELFLNSLQAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N +      + ++   +  +   G +I    L ++            +          L+
Sbjct: 115 NGFLLKDVSLDKLLEAIETVAQGGHLIEPSVLEQMQ--------QSSATAQSVPTHDLLS 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L +++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   ++ +++
Sbjct: 167 EREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILTKLDCRDRTQAVLKGLQLSLI 225


>gi|331698378|ref|YP_004334617.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953067|gb|AEA26764.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 212

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + + +  L  +           R             L    D
Sbjct: 5   IRVLIVDDHPVVRDGLRGVLSGAPDLVVVGEAGDGAEALAR-------------LAAADD 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +  S              L    F T  + +       
Sbjct: 52  PVDVVLMDLRMPVMGGVEAIRELRRSGSAP--------RVLVLTTFDTDRDVLPAIEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +   +    ++       +               V    +  L+
Sbjct: 104 TGYLLKDTPRDELLRAVRAAYRGEAVLSPAVAGRLM------------GQVRTPTEEALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G T+ E A  L IS  T+  ++  I  K   + R+ A++ A R  ++
Sbjct: 152 SRELEVLQLVAAGATNREAARRLFISEATIKTHLLHIYAKLEVRDRASAVSAAYRRGLL 210


>gi|317484063|ref|ZP_07942996.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia
           3_1_6]
 gi|316924707|gb|EFV45860.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia
           3_1_6]
          Length = 282

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 9/181 (4%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L Q  + D I+      +L    A+    +     +                      
Sbjct: 106 IRLAQSLRPDLILLDISMPELSGVEAIPRIREVAPGARILIVSMHATAGH---VRAALKA 162

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   T D     + +  L    + I  +    +        +          K   
Sbjct: 163 GADGYLLKTADEDEFLVAIRALLKGRKYISTELTGSM------IISYVDGNAEASSKADS 216

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +E   L  I+EG ++ +IA  L +S  T++ +  S M+K           +A++N +
Sbjct: 217 LTPKEKMVLKLIAEGNSNKDIAAKLNLSVKTIDTHRTSFMKKLDLHNVREVTRFAMQNGL 276

Query: 246 V 246
           V
Sbjct: 277 V 277


>gi|315657544|ref|ZP_07910426.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492016|gb|EFU81625.1| response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 221

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 21/240 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +D      +  L  R D +              R+                  
Sbjct: 1   MRVAIIDDDAFARDAMKTLLRRVDGITVSWTAGTASEALARLNQ------------DETA 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +      +LVR                           +           
Sbjct: 49  QPQVFLVDISMPGMNGIELVRR-----LHVLSPTSAVIMISVLTRADKI---REAFRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFEL 186
             Y     D A I   L        +       ++  +L    A +          D  L
Sbjct: 101 TGYFVKEDDPALIAENLGKALAGELVFSPTCSRQLISVLTDDAALVAVKRHAGEPSDTVL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT +SE +T+ +IA  L IS NTV  +I SI++K     R+GA+A+ +R  I+
Sbjct: 161 TPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGAVAHGIRQGII 220


>gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus
           RS-1]
          Length = 257

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 14/180 (7%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI----------TPPAGMDNRY 130
           ++P + ++            +++R    F P +                      + + Y
Sbjct: 75  NYPVEWLQTYKEKNFSGIDVIVKRNFTSFTPQYWDHTYKAHKPAREFITLASDFNLIHGY 134

Query: 131 CSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFEL 186
                     +   +  F           +  +  +  +     +      +       L
Sbjct: 135 TYGARPFGFCKQASLFSFSGNFKKYDPTVIAILQTIVPHLHLASSRIIESRLIQHNRKLL 194

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GRE E L+W+  GK+S +I+ IL IS  TVN +I +I++K   + R  A+A A    I+
Sbjct: 195 SGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQNRPQAVAVATHLGIL 254


>gi|225387858|ref|ZP_03757622.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
 gi|225046041|gb|EEG56287.1| hypothetical protein CLOSTASPAR_01628 [Clostridium asparagiforme
           DSM 15981]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 16/216 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ------EQKLDSIVSSDWPFDLVRC 89
           ++  D        + A+ E  G      +  D  Q      E+K D  +      +    
Sbjct: 4   VVIADDIQILRQGLKAILEQDGDIEVTGLAGDGLQAFLLCKEKKPDVALMDMRMPEYDGA 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A+    +    ++         F              + Y         +   +  +  
Sbjct: 64  YAIRRIKEELPGVKIL---VLTTFDDRETVDAALENGADGYILKEMGDDAVIRSVKAVCT 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R+        +   A+                F LT RE + +  +++G  + EIA  
Sbjct: 121 GVRVFGDSVFRSLRETASA-------KPEPGPGAFNLTDRERDIVRLVAQGMDNREIART 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L ++  TV N ++ ++ K   K R+    +AV+NN+
Sbjct: 174 LYLAEGTVRNNLSRVLEKLELKDRTQLAVFAVKNNL 209


>gi|253700593|ref|YP_003021782.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251775443|gb|ACT18024.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +       +  L  R + +  +                    G S   +    
Sbjct: 3   IRIVLADDHAMFREGMRALLEREEDMVVVAEAGD---------------GVSVVEMTLEA 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     LD  +      +    +           +     +   + +     I       
Sbjct: 48  MPDIVVLDLSMPGMKGIEAASIIHEK-----APGVGI---IILSMHNDRQYIIEALKQGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +    +    +   +  ++     +          L+    + F     +  K + LT
Sbjct: 100 KSFILKEWAFQELITAVRFVYNDSSYLSPR-------LSDIIISGFADEGKNPCK-YSLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +  GK   EIA  L IS  TV  Y   IM+K      +  + +AV+  IV
Sbjct: 152 PREEQAYRLLVVGKNCKEIAYELNISSKTVETYRLKIMKKLNLSNIAQLVNHAVQEGIV 210


>gi|154684718|ref|YP_001419879.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350569|gb|ABS72648.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 214

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 9/215 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S    +    E   G     L+         +D  +      
Sbjct: 3   VMVADDQSIVREGLKMILSLHEGIQISGEASCGEEVLRLLSQTETDVILMDIRMPGMDGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +        Y  ++    +    F              + Y     D   +   L
Sbjct: 63  ETTKAVKA-----RYPSVK---VIILTTFEDDHYIFAGLKSGADGYLLKDADSDEMIASL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++       +              +        LT RE++    I EGK++ 
Sbjct: 115 QAVYEGKMMLNPKITVSVVKALNNMEIPAVQKEPRTKLKEILTPRELDVAKHIMEGKSNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IA  L ++  TV NY++ I+ K     R+    Y
Sbjct: 175 RIAADLFLTEGTVKNYVSRILDKLEVSNRTELTLY 209


>gi|124002839|ref|ZP_01687691.1| two-component response regulator [Microscilla marina ATCC 23134]
 gi|123992067|gb|EAY31454.1| two-component response regulator [Microscilla marina ATCC 23134]
          Length = 213

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 19/222 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSSDWPFDL 86
             D       L   ++    M  L E+      +  L + +       D  +       L
Sbjct: 7   VEDHTIVRQGLKQLLAKYAEMKVLAEFGVPDQIMDNLAKGERPDIVLCDINLPGMDGLAL 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +     D+          +   +       +       + Y     + + + +G+  
Sbjct: 67  TEKIKQKYPDQ--------KIIILTMHQKEFYVLKAFDAGADGYFHKDTEESELIMGIKK 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSD 204
           ++   +   +     +        N         GK     LT RE E L  +  G  + 
Sbjct: 119 IYNGQKYFCQSVSQILI-------NRLLDTKNSSGKTLLPTLTFREKEVLEQVVAGLGNR 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   L IS  TV N+ A+I+RK   K     + +A+ N++V
Sbjct: 172 EIGDKLCISTRTVENHRANILRKFGLKNTVELVKFAIENSLV 213


>gi|260362480|ref|ZP_05775413.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus K5030]
 gi|260894575|ref|ZP_05903071.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus Peru-466]
 gi|308094902|ref|ZP_05892254.2| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AN-5034]
 gi|308086485|gb|EFO36180.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus Peru-466]
 gi|308092124|gb|EFO41819.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AN-5034]
 gi|308113367|gb|EFO50907.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus K5030]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +       +                    GA          
Sbjct: 5   KVMLVDDHPLMRRGIHQLLSFEPEFEVVAEASN---------------GADAVAKAHELE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     +           +   V  +  +         +
Sbjct: 50  LDLVLLDLNMKGMSGVDTLKALRADGCE--------ARIVILTVSDSPADIEAIVRSGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   ++            A        H      LT 
Sbjct: 102 GYLLKDTEPDELVELLKQAHQGDKAYSQE-----------VAKYLSERSDHEDVFDSLTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 RETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|254384266|ref|ZP_04999609.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343154|gb|EDX24120.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 216

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 69/222 (31%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   GAS   LVR        +D  +      
Sbjct: 5   VLLVDDEPLVRAGLRAVLDAQPDIEVVGEAADGASVVPLVRQLRPDVVAMDVRMPLLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +  +       V   P  L    F              + +       + I   +
Sbjct: 65  QATRAVLRT-------VDSPPKILVVTTFENDEYVYEALRAGADGFLLKRSRPSEIVHAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L+     ++    +  +       A           +   LT RE   L  ++ G T+ 
Sbjct: 118 RLVAEGETLLFPAAVRALA------AEYGNRGARAVLERAALTEREEAVLRLMARGLTNV 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +   TV +++++I+ K   + R+ A+  A  +  V
Sbjct: 172 EIASELIVGTETVKSHVSAILAKLGARDRTQAVIMAYESGFV 213


>gi|149927806|ref|ZP_01916057.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149823428|gb|EDM82659.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 209

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L   +  +  +            M +                
Sbjct: 2   IKVLLADDHALLRGSLKQLLDDTGFVQVVAQAGEYSEIMKAMTS---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+V+          Y  L+       P        +       
Sbjct: 47  TVDLAILDISMPGKNGVDIVKI-----LKDKYPALKILMLSMHP---EDQYAVRCLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +      ++   + ++    + I  +       LA   A+     D        L+
Sbjct: 99  SGYLTKNTAPEKLVDAIQVIAAGRKYITPE-------LAESLASHLTE-DSEKPLHATLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  I+ GK   EIA  L +S  TV+ Y A I+ K   KT      YA+ N ++
Sbjct: 151 DREFQTIRMIAAGKKLSEIADELSLSPKTVSVYRARILEKMRMKTNGELTRYALENGLI 209


>gi|225872958|ref|YP_002754415.1| two-component system regulatory protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792212|gb|ACO32302.1| two-component system regulatory protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 216

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 38/239 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       VS        +      +   +       L              
Sbjct: 11  RIRVLIVDDHPMVRDGVSASIRGQSDMELCGEAETAEAAIELFKEL-------------- 56

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +  +                 +    +    + +      
Sbjct: 57  -KPDITLMDLRLPGASGVEAIAQIRSH--------FPAARIIVLTTYQGDVQALRALRAG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   T     +   +  +    ++I  +                 +    +  + EL
Sbjct: 108 ASGYLLKTSMRRDLLDTIRSVHSGRKVIPPE---------------IATAMAIYVSNDEL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE+E L  ++ G  +  IA  L IS +TV ++IA+I+ K     R+ A+  AVR   
Sbjct: 153 SKRELEILRQVAAGLPNKLIAERLSISPDTVKSHIANILSKLGANDRTHAVTLAVRRGY 211


>gi|212212758|ref|YP_002303694.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011168|gb|ACJ18549.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 216

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHVLIRRVMRLMLEQVKGIRIVGEASTGEEGMALRREKEPDVVMLDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R     +  +    ++                +         + + + D   +   +
Sbjct: 64  ELAR-----KLLRRDPEIKILVVTAM---EGELLPMRLLDVGVRGFITKSSDSGELERAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I       + L                    +L+ R++E L  +++G  ++
Sbjct: 116 RAVHSGQRYISSAIASRLAL---------SKTTPTKSPFDQLSHRQMEVLLLLAKGMKAE 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 167 EIAKQLHITAKTVNSHRYRMFDKLGVKNDVELIKLAVQYGVI 208


>gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 80/242 (33%), Gaps = 25/242 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKL 74
            H     +   R++ +D        + A  E  G            +   + ++      
Sbjct: 8   DHAEELLNAPPRVLLVDDEPGLRTAVQAYFEDEGFIVSTAADGEEGWEKAQSEVPDVVLS 67

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++     F L++ +   E+     V+      F        + I       + Y    
Sbjct: 68  DVMMPRVDGFGLLKLLREDERLGGTPVI------FLTAKGMTADRIAGFRAGVDDYIPKP 121

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLW----EIGLLAAYQAN------MFKSYDVHWGKDF 184
           FD   +   +  +  +   +L++       ++G +A                      + 
Sbjct: 122 FDPDELVARVRNVVQRQERLLKEAARYADTDLGQMAKQIGEIRTMLQGGAGKAAGQSVEH 181

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + 
Sbjct: 182 SFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFAKTGTASRTELVRYALEHG 241

Query: 245 IV 246
           +V
Sbjct: 242 LV 243


>gi|261212434|ref|ZP_05926719.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341]
 gi|260838365|gb|EEX65021.1| nitrate/nitrite response regulator protein [Vibrio sp. RC341]
          Length = 200

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 65/221 (29%), Gaps = 24/221 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +   P     + +++  +                GA    L          LD  +    
Sbjct: 1   MDDHPLMRRGINQLLSFEAEFEVVAEASN-----GAEAIALAHDIQPDLILLDLNMKGMS 55

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D +  +   E D           +   V  +  +         + Y     +  ++  
Sbjct: 56  GLDTLTALRTDECD--------ALVVILTVSDSAADIEALVKAGADGYLLKDTEPDQLVT 107

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L       +                      + D        LT RE++ ++ +++G  
Sbjct: 108 LLKQAMQGEKAFSESVER-----------YLLNRDEASNPFEALTEREMQIMSEVAKGYR 156

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 157 NRQIADRLFISESTVKVHMKSLLKKLNVPSRTAATILYLER 197


>gi|163119694|ref|YP_081082.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|145903205|gb|AAU25444.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
          Length = 212

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  ++      +  + +  D    +  ++                G       R 
Sbjct: 2   KIKVIIADDNSFIREGMKIILSTYDEFEVLATVED---------------GLQAVEFCRA 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + +    +  R ++ +    +              F      +      
Sbjct: 47  QAVDIALLDVRMPNMDGVEAARLISETGAKPF----------ILTTFDDDEYIVAAIRNG 96

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y     +  RIR  +  +F    ++         ++     +    +     K  E 
Sbjct: 97  AKGYLLKNAEPERIRDAIKSVFNGHIVMQD-------IILDKIKSNLAEHKEAEPKIDES 149

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             T RE+  +  I+ G ++ EI+  L IS  T+ NYI+SI+ KT  + R+    Y
Sbjct: 150 LFTERELGIMALIARGLSNKEISKELFISEGTIANYISSILGKTGLEHRTQIAIY 204


>gi|91786204|ref|YP_547156.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91695429|gb|ABE42258.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 222

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 23/239 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V I++  +       +  +   +  +  +   +       R+ AL    G    LL 
Sbjct: 1   MNTVKILIGDDHRIVREGLKQVLADAPEIEVVAEAETGPDILQRVDALGGDSGLDAVLL- 59

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +      D+++ +  S     +  L        P        +    
Sbjct: 60  ----------DIALPERDGLDVLQALKKS-----WPRLAVLMLSTYP---EKQYAVRCIK 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + +     +   +  +   G  +       +            +     G   
Sbjct: 102 LGAAGYLNKSAHPDDMIAAVRKVATGGVYVSAIAAEALASAVG----NSATKTGGGGGTE 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE +    ++ GK+  EI   L ++ NTV+ Y A I+ KT T+       YA R+
Sbjct: 158 SLSHREHQVFRLLTAGKSVGEIGAQLNLAPNTVSTYRARILEKTGTRNDVELALYAERH 216


>gi|260900449|ref|ZP_05908844.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ4037]
 gi|308106954|gb|EFO44494.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ4037]
 gi|328470949|gb|EGF41860.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           10329]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +       +                    GA          
Sbjct: 5   KVMLVDDHPLMRRGIHQLLSFEPEFEVVAEASN---------------GADAVAKAHELE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     +           +   V  +  +         +
Sbjct: 50  LDLVLLDLNMKGMSGLDTLKALRADGCE--------ARIVILTVSDSPADIEAIVRSGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   ++            A        H      LT 
Sbjct: 102 GYLLKDTEPDELVELLKQAHQGDKAYSQE-----------VAKYLSERSDHEDVFDSLTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 RETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 205


>gi|284029937|ref|YP_003379868.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809230|gb|ADB31069.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 65/227 (28%), Gaps = 13/227 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
                + +    D     I     +     M  + E   GA     +R         D  
Sbjct: 1   MAEGRTRILIADDQERVRIGFRLILDSQPDMQVVAEAADGAEALRAIRTHRPDIVLTDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L R +  +              +    F       T      + +       
Sbjct: 61  MPHVDGLELTRQVTAATFGV------PVKVIVITTFEVDEYVHTALQHGASGFLLKRSGP 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +I       +     +     +       K   LT RE E    +
Sbjct: 115 NLLVEAVRAAVSGDTLISPQVTVRLLEQLRH-----RRSGPLPDKAA-LTDREREITMLV 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G ++ EIA  L IS  TV  ++A+I RK + ++R G  A+A +  
Sbjct: 169 GRGLSNAEIATELFISVGTVKTHVANIQRKLSARSRVGIAAWAWQTG 215


>gi|284030307|ref|YP_003380238.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809600|gb|ADB31439.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 213

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 59/230 (25%), Gaps = 22/230 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R           + L  ++ L   V             GA    LV         +D
Sbjct: 3   ERVRVVVADDQQVVREGLVALLGLIDGVEVVGAA-----ADGAEAVQLVAEHNVDVVLMD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +                 L    +                Y +   
Sbjct: 58  LKMPVLDGVQATARLTADN--------PEAAVLVLTTYADDASIAQALRAGARGYLTKDA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   L            +    +                  G    LT RE E L 
Sbjct: 110 GRVEIGAALRATAAGQSTFDPEVARRLV---------AGLSPAPAGSKDGLTARETEVLR 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I++G ++ EIA +L I   TV  +I +   K   + R+ A+ YA R+ I
Sbjct: 161 LIAQGLSNGEIAGLLFIGEATVKTHINNTFAKIGARHRAEAVRYAYRHGI 210


>gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 199

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 59/218 (27%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   +     M  + +   G                +D  +      D  
Sbjct: 7   AEDQQMLLGALGSLLDLEDDMTVVGKGTNGQDAIDFAEKHPVDICLMDIEMPGKTGLDAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  ++                  F              + Y         +   +  +
Sbjct: 67  EELKGTDVKII----------ILTTFARSGYFQRALKAGVSGYMLKDSPSEDLASAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               ++   + + ++                 +  +  LT RE   L  +++GK + EIA
Sbjct: 117 MKGKKVYAPELMEDL-----------------YSDENPLTEREKSVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NYI+ I+ K   K R  AI  +     
Sbjct: 160 KELSIKSGTVRNYISIILDKLEVKNRIEAITRSKEKGW 197


>gi|295680795|ref|YP_003609369.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440690|gb|ADG19858.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   ++ T  M  + E   G+     +R        LD  +      
Sbjct: 4   ILIADDHAIVRGGLKQIIATTADMIVVEEAGHGSEVIDKLRSCDIDLLLLDMTMPGISGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+R +           L         + +               Y +   D   +   +
Sbjct: 64  DLIRRVRSDR-----PGLPLL---VLSIHNEAQVASRALRAGATGYVTKDSDPDVLLAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   GR I   +L +  +   +  +              LT RE + L  I+ G++ +
Sbjct: 116 RKLADGGRFIDP-KLVDAMVFEKHAGD--------VPPHEVLTDREFQVLQLIASGQSIN 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA    +S  T++ +   +M+K      +  I YA+R+ ++
Sbjct: 167 DIAEACSLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGLI 208


>gi|260907087|ref|ZP_05915409.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 231

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 24/244 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+     + +++  +D    + ++ +   ++ +  +           +            
Sbjct: 1   MSQNAAPIRVIVVDDDPMVVTGITGILHPAEDIELVGSASSGEEALDK------------ 48

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      + +  +  S        ++ P  +    F T     
Sbjct: 49  ---AALHFPDVVLTDIRMPGIGGIEAIERLVNS--------VRPPQVVALTSFDTDDYLF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +     I+    + ++        +  +  +   
Sbjct: 98  RALEAGAAGYLLKDIAPVALAEAIRKVHVGEPILSPRSMRQLITKVTAGQDQRRQREAEE 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE+E    +++G ++ EIA    +S  TV  ++  I  K  T  R       
Sbjct: 158 M-LADLTERELEIAILVAQGLSNQEIADATFMSTATVKTHLNRINIKLDTSNRVHIAVAV 216

Query: 241 VRNN 244
            R  
Sbjct: 217 ERAG 220


>gi|72162632|ref|YP_290289.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916364|gb|AAZ56266.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 61/241 (25%), Gaps = 24/241 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + ++L  +D    + ++ +   +  L  +                    GA    LV 
Sbjct: 7   PPITVLLVDDDPLVRAGLTIMLGGAPDLRVVGDAGD---------------GAQALALVD 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +           +                 +    F      +     
Sbjct: 52  EHHPDVVLMDIRMPGMDGLTATERLRARRNAPE--------VIVLTTFDADQHVLRALRA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +         I   +  +     ++    L  +    A      +       +   
Sbjct: 104 GAAGFLVKDTPPEEIVAAVRQVACGNPVLSPTVLRRLIARVADPEADLRRSRARQ-RLAH 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E    +  G ++ +I+  L +S  TV  ++++I+ K     R           +
Sbjct: 163 LNDREREVAVAVGRGLSNAQISAALHLSVPTVKTHVSAILAKFGFTNRVQIALLVHDAGL 222

Query: 246 V 246
           +
Sbjct: 223 L 223


>gi|83747164|ref|ZP_00944207.1| Two-component response regulator [Ralstonia solanacearum UW551]
 gi|207727505|ref|YP_002255899.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207741890|ref|YP_002258282.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83726139|gb|EAP73274.1| Two-component response regulator [Ralstonia solanacearum UW551]
 gi|206590742|emb|CAQ56354.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206593276|emb|CAQ60203.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 59/244 (24%), Gaps = 37/244 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN     V ++L  +       V            +              AL+       
Sbjct: 1   MNM---PVKLLLVDDHPLVRDGVRVRLEAVPHFQVVGEAGDADGALQAARALS------- 50

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +       L                     L   +   L    
Sbjct: 51  --------PDLALMDIGMRGMNGIALTEKFGEQ--------FPEIAVLVLSMHDNLEYVR 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y       + +   +  +                      A       V  
Sbjct: 95  QVMRAGARGYVLKDAPASELVEAIDAVLAGRPFYSA-----------QLAMRMAEQAVAP 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  +++G ++  IA  LG+S  TV ++  ++ RK   + ++  + +A
Sbjct: 144 TPVEALTPREHDILDGVAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFA 203

Query: 241 VRNN 244
           V   
Sbjct: 204 VEAG 207


>gi|332666745|ref|YP_004449533.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335559|gb|AEE52660.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 217

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q  ++L  E       +  L ++ D    +  +         +               
Sbjct: 1   MKQYTVLLADEQPLVRLALRQLLSQRDHYQVVAEVGNEEELLASLK-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   K D +V      +  R   +++        Q            + + +    
Sbjct: 47  ------INKPDLVVIDYSQSESFRPSTIAKIKTVSPQTQVLVISADTRKENIFQVLEM-- 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + + T     I                D+ +   ++       F           
Sbjct: 99  -GVTSFLTKTCGTNEILDAAHATLKG------DKFFCTRVIDCLLEKSFSKDTQVNCAPT 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E +   + G  + EIA  L +S +TV  +  +IM+K    + S  + YAV   
Sbjct: 152 PLSSREIEIVQLSARGLIAKEIADTLNLSTHTVYTHRKNIMKKLQINSSSELVLYAVSKG 211

Query: 245 IV 246
           +V
Sbjct: 212 LV 213


>gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 201

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S +S L    D L  +                    GA+ +  ++  
Sbjct: 2   ITLYLAEDQSMLNSALSQLLNLEDDLTVIGSAQD---------------GATAWQAIQSQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +                 +    F          A   
Sbjct: 47  PPDVAILDIEMPKMTGLDVADQIHTHALP--------TKVIILTTFAQKAYFQRAIAAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 99  NGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANM----------------VTAESNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN  +
Sbjct: 143 ERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWL 201


>gi|238060047|ref|ZP_04604756.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237881858|gb|EEP70686.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 264

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 65/241 (26%), Gaps = 29/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  +       +  +      +  +            + A             
Sbjct: 51  VERIRVLIVDDHPVVRRGLRTMLEGESWVDGIAEAATCAEAVSSVVA------------- 97

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D      +D  +      +  R + LS              L   +            
Sbjct: 98  --DRVGVVAMDVALPDGDGVEATRRILLSR--------PETRVLMLTMADDEDVVNRSLR 147

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   I   L  +   G ++      ++           +          
Sbjct: 148 AGARGYVLKDTDPDVIIDALRTVAGGGLVLGPRVGPQVLTTLQ------RQPVELPPPFD 201

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  ++ G+T+  IA   G+S  TV N ++++  K     R  A   A    
Sbjct: 202 RLTPRERDILRHLATGETNARIARRFGLSEKTVRNQLSAVFAKLGVTDRVQAALLARDAG 261

Query: 245 I 245
           +
Sbjct: 262 L 262


>gi|256395178|ref|YP_003116742.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361404|gb|ACU74901.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 72/243 (29%), Gaps = 23/243 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDC-TVSWTMRMYALTEYVGASHFLLV 64
             + +VL  + +   + V     R+   A         +                   ++
Sbjct: 3   DPITVVLVDDHQMFRAGVRTELHRAAKAAGAQAGAPIEIEIVGEADETARA-----VEVI 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  +      +++R        +    L     L   V     + I    
Sbjct: 58  AATRPQVVLLDVHLPGGGGVEVLR--------QTAPALPDVRFLALSVSDAAEDVIAVIR 109

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
                Y + +   A +   +  +                 LA +  + F S       + 
Sbjct: 110 AGARGYVTKSISGAELADAVRRVADGDAFFSPR-------LAGFVLDAFASGGAAARDEE 162

Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L +I+ G    E+A  L IS  TV  +++S++RK     R     +A  
Sbjct: 163 LDRLTPREREVLRFIARGYAYKEVARELVISIKTVETHVSSVLRKLQLSNRRELTRWASD 222

Query: 243 NNI 245
             +
Sbjct: 223 RRL 225


>gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
 gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 67/243 (27%), Gaps = 26/243 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +++  +       V     R +    +           +                  
Sbjct: 31  PVKVLVVDDHPLFRFAVRQFLDRHERFRVVAEAASAHEAVQQAE---------------L 75

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +       + R +             +   +           +      
Sbjct: 76  HRPDLALVDLRLPGINGLQVTRLLKRQNG--------KLPVVLLSADENESWLLGALQVG 127

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---LAAYQANMFKSYDVHWGKD 183
              + +   +   +   L  +      + +  L    L   +                 D
Sbjct: 128 AAAFLAKDSEPREMLAVLEAVVAGEDRLPQQILDRPHLARRVLGELQRYVVGEAGLESPD 187

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE++ L  +++G ++ EIA  L I+  TV N++ SI+RK   + R   I  AVR 
Sbjct: 188 AVLTVRELQVLDCVAQGMSNKEIAEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVRQ 247

Query: 244 NIV 246
             V
Sbjct: 248 GWV 250


>gi|323128869|gb|ADX16299.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 270

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 61  MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 108

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 109 ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 157

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I        +  ++       D 
Sbjct: 158 AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFI--------SNTRTPKGGHH-DM 208

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268

Query: 245 IV 246
           ++
Sbjct: 269 LL 270


>gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D       L   +     M  +     G                LD  ++  
Sbjct: 6   VIRVLVADDQELMRSALGTVIDVQPDMRLVGSVPSGEDAVREALAVSVDVALLDIRMARM 65

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +    +     D           L    F          A   + + +     A + 
Sbjct: 66  DGIEACAEIRRHRPD--------TRVLMLTTFDLDEYLFRSVAAGASGFLTKDTPGADVA 117

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++       +         + ++         +L+ RE + L  ++ G 
Sbjct: 118 GAIREVHSGRSVVSPRATRAL------IDRIARAAPDAAAVAADLSPRERDVLALLARGF 171

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L ++ +TV  +++S+ RK   + R   + +A RN I
Sbjct: 172 SNAEIARELFVAESTVKTHVSSLTRKVGVRDRLHVVVWAYRNGI 215


>gi|221065880|ref|ZP_03541985.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220710903|gb|EED66271.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 220

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 29/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   ++++ IVL  +       +  L  R   +     +  + +   ++           
Sbjct: 1   MINAMEKIRIVLADDHPLTLVGIQDLLERDMNIVVTASVSTSTALVEQL----------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                  L      D  +  D    D +R +    +      L   T +  P+  +   +
Sbjct: 50  ----NSSLPDIIITDYTMPGDSVYGDGIRFVDYLIRTYPAPKLLVLTMISNPMIISSLYD 105

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                            +  I   +  L    +    +    +        +  +     
Sbjct: 106 -----AGVWGVVLKHDKLTEILSAINCLRLGNKYFPTNYQQNV--------SREQRNTSV 152

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   L+ RE E L     G +  +IA  L  S  TV+    S M K   ++    I +
Sbjct: 153 ADRVKLLSPREFEVLRHFVRGDSVVQIAANLKRSVKTVSTQKTSAMEKLNVQSNQELITF 212

Query: 240 AVRNNI 245
            V N +
Sbjct: 213 CVENGL 218


>gi|37519813|ref|NP_923190.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210804|dbj|BAC88185.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 232

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 79/254 (31%), Gaps = 35/254 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +VL  + +   + +    ++SD +  +       +    +  +            
Sbjct: 1   MDPIRVVLVEDHDLTRAGLRMALSQSDHIKLLGDASNGEAGLRLIEQM------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      ++ R +     +           L   +       +   A
Sbjct: 49  ---KPDLAIVDVGLPGIDGIEVTRRVKSEHPEI--------LVLILTMRDDSQTVLAAFA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYD--- 177
              + YC        +   +         I        L E+   + + A   +      
Sbjct: 98  SGADSYCMKDIASKDLLQVVEKTHEGTSFIDPSVAGIVLNEVRSRSVHAAPGTRQTVIQA 157

Query: 178 -----VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    +   LT RE+E L  I +G +++ IA  L I+  TV  ++ +I+ K     
Sbjct: 158 ADPELAQILEASPLTERELEVLQLIVQGHSNEGIAQQLYITVGTVKTHVRNILSKLCADD 217

Query: 233 RSGAIAYAVRNNIV 246
           R+ A   A+R+ +V
Sbjct: 218 RTQAAVLALRSGLV 231


>gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. SA3_actG]
 gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces
           sp. SA3_actF]
          Length = 222

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  ++  +D      ++ L    + +  +                    G          
Sbjct: 2   IRAMIVDDDALVRLGLTDLLDADEGIEVVAQATD---------------GVHAVEQATAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +          V   P  +    F          A   
Sbjct: 47  RVDVALVDVRMPRMDGITAISRLRA--------VPHPPRIITLTTFDLDEYVYNALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     D A I   + L+     ++       +  +  Y             +   LT
Sbjct: 99  DGFLLKDADPAEILRAVHLVAAGSAMLHPAAARRL--IDRYHHANGPRATHAQARTAPLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  ++EG+T+ +IA  LG+  +TV  +++ I+       R  A   A    +
Sbjct: 157 PRERDVLALLAEGETNADIARRLGMRESTVKAHVSRILTALEVTNRVQAALVARDAGL 214


>gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
 gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45]
          Length = 214

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 36/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              + +  +       +  +    D +     L        R+ AL              
Sbjct: 4   PTRVAIVDDHPLVAEGIEAILESYDDIEVTATLSNGQEMIDRLEALA------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +                 L   +  T     T     
Sbjct: 51  --PDVILMDLNMPGLSGLSATEMILERR--------PETRILVLSMHDTPEYISTALGHG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         ++  +  +    R +       +               V  G   +L
Sbjct: 101 AMGYVLKDVPTDEVKRAIDAVMAGERYLCTGAEGAL-------------RPVMTGGREQL 147

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  +++GK++ E+A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 148 TNREQMVLLQLAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207


>gi|289768678|ref|ZP_06528056.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698877|gb|EFD66306.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 220

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 65/246 (26%), Gaps = 28/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + ++L  +       V  +      L  +                        
Sbjct: 1   MMSARPPIRVLLADDHTLVRRGVRLILDGEPDLTVVAEAGDGA----------------- 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                    +  ++D  V       +    A  E  +    L+        ++       
Sbjct: 44  ---EAVAAARATEIDLAVLDVAMPRMTGLQAARELSRRLPELRIL---ILTMYDNEQYFF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   +     +             I       +        +  +      
Sbjct: 98  EALKAGACGYVLKSVADRDLVEACRAAVRDEPFIYPGAERAL---VRSYLDRVQGGGGLP 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +    T RE E L  ++EG TS EI  +L IS  TV  + A++++K   + R     YA
Sbjct: 155 ERPI--TEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYA 212

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 213 IRAGLI 218


>gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
 gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium
           genitalium ATCC 33030]
          Length = 198

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 29/219 (13%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-------FQEQKLDSIVSSDWPFDLV 87
           R++ +D        + A+    G    +    D              D  +      +L 
Sbjct: 2   RVMLIDDHPVVRAGLRAVLNSFGDIDVVAEASDGTAEVPADVDVVVSDIQMPGVDGIELT 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +                 L    + T  + +         Y         +   ++  
Sbjct: 62  RRLVAEGGPP---------VLILTTYDTQADVVAAMEAGAMGYLLKDAPEDELHDAVVAA 112

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             + R +       +              +     D  L+GRE+E L  +  G ++ EIA
Sbjct: 113 AQRERTLSPQVANTLA-------------ERVLKPDEALSGREIELLKALQTGMSNREIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS+ TV  ++  I  K     R+ A+  A    I+
Sbjct: 160 EALFISQATVKTHLIHIYAKLGVDNRTAAVDKARERRII 198


>gi|239982955|ref|ZP_04705479.1| LuxR family two-component response regulator [Streptomyces albus
           J1074]
 gi|291454789|ref|ZP_06594179.1| luxR family two-component system response regulator [Streptomyces
           albus J1074]
 gi|291357738|gb|EFE84640.1| luxR family two-component system response regulator [Streptomyces
           albus J1074]
          Length = 237

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 67/239 (28%), Gaps = 19/239 (7%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + + +  + E     V  L    + +  +           R+ A              
Sbjct: 12  EPIRVFILDDHEVVRRGVRDLLEAEEGIVVVGEASDARQALARVPAT------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   LD  +  D   D        E       L          F            
Sbjct: 59  --RPQVAVLDVRLGDDAGGDHAGIEVCRELRARMPELVCLM---LTSFDDDEALFDAIMA 113

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDF 184
             + Y     + A +   +  +     ++        +  L    A+   +         
Sbjct: 114 GASGYVLKQINGADLVSAVRTVASGTSMLDPRTTARVMARLRGGPADSQPAEPEQPSVLD 173

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE E L  I EG T+ EIA  L ++  TV N I++I+ K     R  A   A R 
Sbjct: 174 RLSPREREILELIGEGLTNREIAERLYLAEKTVKNRISAILSKLGVGRRIQAAMIAGRL 232


>gi|284007635|emb|CBA73286.1| type III secretion two-component response regulator [Arsenophonus
           nasoniae]
          Length = 214

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 32/240 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ IV+  + +     +         L  +  +                 G   +   
Sbjct: 6   LKRIKIVVVDDHDLIFDGLKSCLAPYSDLELVGFVTD---------------GLGVYDAC 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + +R +             +   +         +      
Sbjct: 51  LKLQPDLVIMDLSLPGMSGVEAIRQLRKRW--------PKLMVIVLTASEEERKARDALD 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y       + +   +  +      I  +            A +     V  G   
Sbjct: 103 AGANGYVLKHGSKSTLIAAIKSVGRGKFFIDPNL---------DAAKIVALKGVENGDIP 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I EGK + +IA  L I   TV  +  +IMRK      +  + +A R  
Sbjct: 154 VLTHREKQVLKLIFEGKRNRDIAEALVIGLKTVETHRMNIMRKLDAHNVADLMKWAHRMG 213


>gi|134094861|ref|YP_001099936.1| nitrate/nitrite response regulator protein [Herminiimonas
           arsenicoxydans]
 gi|133738764|emb|CAL61811.1| nitrate/nitrite response regulator protein [Herminiimonas
           arsenicoxydans]
          Length = 235

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 70/243 (28%), Gaps = 27/243 (11%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N     ++++L  +     S +  L  R    + +      V    R   L         
Sbjct: 12  NLAPPPISVLLIDDHTLFRSGIRSLLQRYPEFSVVGEAADGVEGIKRARQL--------- 62

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       LD  +        ++ M     +           +   V     +   
Sbjct: 63  ------QPDVVLLDLNMPGISGLQTLQLMLQDCPN--------TAVIMLTVSEDAEDLGV 108

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y     D   +   +        ++      ++                   
Sbjct: 109 ALQSGARGYLIKNIDADYLVRAIQRAAAGEAVVAEAMTSKLIAQLQNAGQR----TEVRS 164

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +LT RE + L  ++ G+++  IA  L ++ +TV  ++ +I++K    +R  A  +AV
Sbjct: 165 ELDKLTPRERDILACLARGESNKLIARTLDVADSTVKIHVQNILKKLNLSSRVQAAIFAV 224

Query: 242 RNN 244
            + 
Sbjct: 225 GHG 227


>gi|91213197|ref|YP_543183.1| DNA-binding transcriptional activator UhpA [Escherichia coli UTI89]
 gi|117625950|ref|YP_859273.1| DNA-binding transcriptional activator UhpA [Escherichia coli APEC
           O1]
 gi|218560750|ref|YP_002393663.1| DNA-binding transcriptional activator UhpA [Escherichia coli S88]
 gi|237703473|ref|ZP_04533954.1| response regulator for uhpBA two component regulatory system
           [Escherichia sp. 3_2_53FAA]
 gi|91074771|gb|ABE09652.1| response regulator for uhpBA two component regulatory system
           [Escherichia coli UTI89]
 gi|115515074|gb|ABJ03149.1| response regulator for uhpBA two component regulatory system
           [Escherichia coli APEC O1]
 gi|218367519|emb|CAR05301.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli S88]
 gi|226902737|gb|EEH88996.1| response regulator for uhpBA two component regulatory system
           [Escherichia sp. 3_2_53FAA]
 gi|294489575|gb|ADE88331.1| transcriptional regulatory protein UhpA [Escherichia coli IHE3034]
 gi|307628751|gb|ADN73055.1| DNA-binding transcriptional activator UhpA [Escherichia coli UM146]
 gi|315285483|gb|EFU44928.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|323949916|gb|EGB45800.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955033|gb|EGB50811.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
          Length = 196

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 36/224 (16%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLD 75
              + +          A+++ L+  +             G+    L        Q    D
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAE-------FGSGREALAGLPGCGVQVCICD 54

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +L+  +            +    +   V  +              + S   
Sbjct: 55  ISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRC 103

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   G  +  D   ++                  G+   LT RE +   
Sbjct: 104 SPDELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRERQVAE 147

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 148 KLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|37524816|ref|NP_928160.1| two-component response regulator. hexose phosphate transport system
           regulatory protein UhpA [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784241|emb|CAE13110.1| Two-component response regulator. Hexose phosphate transport system
           regulatory protein UhpA [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + +          A+++ L+  +    +     E         +  +      +D  + 
Sbjct: 4   VALIDDHVVVRSGFAQLLTLENDLEIVGQYANAKEAW-----SGLLRNPIDVAVMDIAMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +     D           +   ++ T     +        Y +       
Sbjct: 59  DESGLHLLTRLRQKRPDF--------RTIILSIYDTTAFVQSALDAGACGYLTKRCGPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +  D L  +           +           LT RE E    +  
Sbjct: 111 LVQAVRSVHQGGCYLCADALKAL-----------RQTSQKVTALQVLTPREREIFDLLIN 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G     IA  L +S  TV+ + A+I+ K    +    + YA+++ I+
Sbjct: 160 GINVKTIAEQLYLSHKTVHVHRANILSKLQCDSTIDLVHYALQHQIL 206


>gi|330828902|ref|YP_004391854.1| DNA-binding response regulator, LuxR family [Aeromonas veronii
           B565]
 gi|328804038|gb|AEB49237.1| DNA-binding response regulator, LuxR family [Aeromonas veronii
           B565]
          Length = 212

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 31/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       +  L    + +                       G     L +   
Sbjct: 7   TVLVVDDHPLMRKGIVQLLALEENMEVTGEASN---------------GTDAVALAKESE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +   E             +   V     + +       +
Sbjct: 52  PDLILLDLNMKGLSGLDTLKALRAEEIT--------SRVVILTVSDARQDVVALLKAGAD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L  +    +I+       +              D    K   LT 
Sbjct: 104 GYLLKDTEPDLLLAQLADVMTGKQILSEPLRPYL--------ENIYELDHLQQKLESLTR 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  I++G ++ ++A +L IS  TV  ++ S+++K   ++R  A    +  
Sbjct: 156 REMQILREIAKGLSNKQVASVLHISEGTVKVHVKSLLKKLEAQSRVEAAVMYLEQ 210


>gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 10/215 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D    W   +    +  G +                  +   ++      D     
Sbjct: 12  VMVVDDHPMWRDAVARDLDGAGFAVVATADGVAAAGRRAAATRPAVVLMDMQLPDGNGAA 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A +              L         + +       + Y   +  V  +   +      
Sbjct: 72  ATAAVLDVSP---DSRVLVLSASSERDDVLDAVKAGASGYLVKSASVEELLDAVRATAAG 128

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +        +  L  Y+       D       +LT RE E L ++++G ++ +IA  L
Sbjct: 129 QAVFTPGLAGLV--LGEYRRMSSAPADEQGPAVPKLTERETEVLRFVAKGLSAKQIATKL 186

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +S  TV N++ + +RK     R     YA+   +
Sbjct: 187 SLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|332672006|ref|YP_004455014.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332341044|gb|AEE47627.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 212

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 59/228 (25%), Gaps = 19/228 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R       P      A ++     +         T   G +   LV         +D  +
Sbjct: 3   RVVVADDQPVVLQGFAAILGSVPDLDVVG-----TAPDGRALVDLVARTAPDVAVVDVRM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                      +                 L    F              + +        
Sbjct: 58  PVLDGIAATVRVVAEH--------PGTRVLILTTFDLDEYVYDALRAGASGFLLKDVTAE 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R+   + L+     ++  +    +        +  +   V       LT RE +    ++
Sbjct: 110 RLVDAVRLVADGSMLLGANVTRRL------VEDFARRGRVPSTTLDALTPREHDVALAVA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ EIA  L I   TV  +++  +RK   + R   +       ++
Sbjct: 164 RGLSNGEIAAELFIGEATVKTHVSECLRKLGCRDRVQLVVTVHEAGLL 211


>gi|330809600|ref|YP_004354062.1| two-component Response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377708|gb|AEA69058.1| Putative two-component Response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 210

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 66/229 (28%), Gaps = 27/229 (11%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V       D +  ++ +   +             GA    +V         +D  
Sbjct: 7   IRVALVDDHSLVRDGIKALLSVMPRLDVVGEAEN-----GAQAIEMVGRSQPDLLLMDIS 61

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L R +        Y  L+         +              + Y       
Sbjct: 62  LKDMNGLELTRLLGKQ-----YPSLKILILSM---YDNYEYVSESVRSGASGYVLKNAPS 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +   G     +    +                +   D ELT RE + L  +
Sbjct: 114 REIIAAIEAIISGGTFYSAEIAQRLA--------------TNPNTDSELTPRESQVLAKM 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G  + E+A  L IS  TV  +  SI RK      +  + YA+ + I+
Sbjct: 160 VQGLNNKEMARELDISVRTVETHRLSIRRKLNIDKPAALVKYAIDHGII 208


>gi|271963445|ref|YP_003337641.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506620|gb|ACZ84898.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 226

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +      +  +                    G     LV   
Sbjct: 2   IRVLLADDEAMIRAGVRAILAADPEIEVVAEAGD---------------GREAIDLVLSH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        V  +          V      +    F              
Sbjct: 47  RPDVVLLDIRMPRMDGLAAVAELRR--------VAPGTAVVMLTTFGEDDYIARALGEGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D   +  G+  +      +       +  +                +   LT
Sbjct: 99  GGFLLKSGDPRELLAGIHAVAEGAAYLSPRVAHRV--ITQLTGGRMTRVVAAREQVAALT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  + EG ++ +IA  L +   TV  ++++I+ +   + R  A   A    ++
Sbjct: 157 PRERDVLALVGEGLSNGQIARRLYLVEGTVKAHVSAILTRLGARNRVQAAILAHEAGLL 215


>gi|256424453|ref|YP_003125106.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039361|gb|ACU62905.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 219

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  + +   S V +  T  + +  +   +        M                  
Sbjct: 5   IKVAIADDHKIFRSGVINTLTPYENITVVFEAEDGAHLLEIMEEQ--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    +  + +     +           +   ++      +       
Sbjct: 50  QPDVILMDLKMPNMDGIEATKKVREKYAN--------VKVIVLTMYEDDNFIVHLIENGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y     +   I   +   + KG     +    + LL        + +   +  + +LT
Sbjct: 102 NAYLLKNAEPNEIYEAICTTYEKGFYFNENV--NLALLKKVMHKNKQHFKPTFRNEVQLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I    T+ EI+  + +S  TV      ++ KT  K   G + +A RN I+
Sbjct: 160 DRELEVLRLICNEHTTQEISKEIFLSPRTVEGLRQKLLEKTGAKNIVGLVMHAFRNGII 218


>gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 200

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            +                  
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIE---------------LL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDVSIMDIEMPIQSGLDVAETLKKEKS--------ACKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAASIRNVMKGKREISQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200


>gi|86751143|ref|YP_487639.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86574171|gb|ABD08728.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ + L  +     S +  L      L  +       +   R   L             
Sbjct: 12  SRLRVFLADDHPVVLSGMKALVAGDPALEVVGEASDGPNALRRATEL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      ++ R                   L   V             
Sbjct: 59  --RPDVAVLDLSMPGLNGIEVARKFLA--------ACPECRVLVLTVHEDGAYLRQLLDL 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDF 184
             + Y         +  G+  +   G  +        IG  A +  N             
Sbjct: 109 GVSGYVLKRSATEELIRGIHAVGTGGIYLDPAIAGRAIGRSAPHVHN-----SEEHSAVS 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L   + G ++  IA  L I   +V  Y A  M K     R   + +A+   
Sbjct: 164 ELSTREIEVLRLAAVGHSNKTIAAKLQIGAKSVETYKARGMAKLGFHNRVEVVRFALSMG 223

Query: 245 IV 246
            +
Sbjct: 224 WL 225


>gi|54308044|ref|YP_129064.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum SS9]
 gi|46912470|emb|CAG19262.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum SS9]
          Length = 208

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L +       +                    G     +     
Sbjct: 5   KIMIVDDHPLMRRGIGQLLSFEPDFEMIGEASN---------------GTDAVAMAHEKN 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  M               + +   V  +  +     A   +
Sbjct: 50  PDLILLDLNMKGMSGLDTLNVMRAEGI--------LASIVVLTVSDSRSDVKALVAAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L      G+                     +S          LT 
Sbjct: 102 GYLLKDTEPDELISLLKQALCGGKAYSDIVR-----------EHLESNTEQDCLLSLLTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  +++G  + +IA  L IS  TV  ++ S+++K   K+R+ A    +  
Sbjct: 151 RETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAATVLYLEA 205


>gi|28901050|ref|NP_800705.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28809563|dbj|BAC62538.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 208

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +       +                    GA          
Sbjct: 3   KVMLVDDHPLMRRGIHQLLSFEPEFEVVAEASN---------------GADAVAKAHELE 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     +           +   V  +  +         +
Sbjct: 48  LDLVLLDLNMKGMSGVDTLKALRADGCE--------ARIVILTVSDSPADIEAIVRSGAD 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   ++            A        H      LT 
Sbjct: 100 GYLLKDTEPDELVELLKQAHQGDKAYSQE-----------VAKYLSERSDHEDVFDSLTD 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 149 RETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 203


>gi|88811894|ref|ZP_01127147.1| DNA-binding response regulator, LuxR family protein [Nitrococcus
           mobilis Nb-231]
 gi|88790778|gb|EAR21892.1| DNA-binding response regulator, LuxR family protein [Nitrococcus
           mobilis Nb-231]
          Length = 245

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L R        +D  ++    
Sbjct: 23  RILLADDHALVRAGLRKLLEQIPAVEIVGEAANGLEACRLARSLNPDLVLMDISMTVLNG 82

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +  S              L   ++                Y         + + 
Sbjct: 83  VEATAQLLKSS---------DAQVLILSMYANSDYVQRALKAGARGYLLKEATNTELELA 133

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +    + ++  L      + ++     G+   LT R+ + L  I EG T+
Sbjct: 134 IESVRKGKIYLSPAVVTDV--LDECLDYLGQTSKQEGGELEVLTPRQRQILQLIVEGNTN 191

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA +L +S  TV  + + +M +         + YA+R  I+
Sbjct: 192 SDIADLLHLSIKTVEAHRSELMHRLDIHDVPSLVRYAMRMGII 234


>gi|298504796|gb|ADI83519.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 215

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   VS    +  +     GA+   L R        +D  +     
Sbjct: 3   RVLLVDDHRIVLEGLRALVSEHSDLEVVGVACDGATAIELTRQLRPDVVVMDITMPGMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D  R +             R   L   +       +       + Y         + + 
Sbjct: 63  IDATRRIVAE--------FPRTRVLVLSMESERRFVLEVLKAGAHGYLLKDCSQDELVLA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +         ++            +          RE E L  I+ GK++
Sbjct: 115 IRHVAAGEPYLGPRIT---EMIIRAYMERIPDDSLLTHTLLS--LREREVLQLIAAGKST 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA   G+S  T+     SIM+K    + +    YA+R  +
Sbjct: 170 KEIAFAFGVSLKTIETQRHSIMKKLNLYSIAELTKYAIREGL 211


>gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 189

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  P--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QELMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 212

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +  R + +  +                    G     L    
Sbjct: 7   IKVLVVEDHSVVREGIVSVLNRQENITVVAEAKN---------------GKEAIALHADH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + V  +  +          +   +    + T  +         
Sbjct: 52  QPDITLMDLRMPQIEGLEAVIQIRTAS--------PQARIIILTTYDTDEDIYQCLQAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  ++   R I  D   ++                   +  ELT
Sbjct: 104 RGYLLKDATSQELTQAVRQVYQGKRFIPADVAMKLA---------------ERIESDELT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  + +G ++ +++  L IS  TV  ++ +I++K     R+ A+  A+   IV
Sbjct: 149 AREIDVLEMMVQGSSTAKLSEALHISEGTVKFHVNNILQKLNAHDRTQAVVTALHRGIV 207


>gi|171911633|ref|ZP_02927103.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 222

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 66/228 (28%), Gaps = 18/228 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            + R   V       +    M+     +       +  E +G     L+          D
Sbjct: 8   SKARVLLVDDHRMVLEGYRFMLNAQPDLEVCATAVSAAEALG-----LLEQVRPDLVVTD 62

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      DL++ +                 L C +   +             Y     
Sbjct: 63  LTLGGRSGLDLIKDVMAL--------FPETKILVCSMHDEMLWANRTLQAGARGYVMKDA 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D       +  +    R +       +  L ++  +  +       K   L+ RE E   
Sbjct: 115 DGPTFLTAVRTVLAGQRYMSSRLAASV--LESFGQSKPRGSSSPIEK---LSDREFEVFR 169

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              EGKT+ EIA  L +S  TV+ +   I  K    T +  I  AVR+
Sbjct: 170 LFGEGKTAKEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIRQAVRH 217


>gi|229525821|ref|ZP_04415226.1| BarA-associated response regulator UvrY [Vibrio cholerae bv.
           albensis VL426]
 gi|229339402|gb|EEO04419.1| BarA-associated response regulator UvrY [Vibrio cholerae bv.
           albensis VL426]
          Length = 214

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +      D                          +
Sbjct: 2   ISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRT---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     D           +   V    P          
Sbjct: 47  HADVILMDMNMPGIGGLEATKKLLRVNLDI--------KIIVLTVHTENPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + ++    R I  +   ++ L     A+             +L+
Sbjct: 99  AGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 151 ERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 209


>gi|284030392|ref|YP_003380323.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283809685|gb|ADB31524.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 63/228 (27%), Gaps = 22/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P     L  M+ +   +             G     LV         +D  +
Sbjct: 6   RVLVVDDHPVVRSGLIGMLAVTDDIEVVGEAGD-----GEEAVALVASTRPDVVLMDLRM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                      +                 L    + T  + +         Y       A
Sbjct: 61  PRRDGVSATGAIVS--------GHPATKVLVLTTYDTDSDILHAVEAGAAGYLLKDTPHA 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  G+        ++          +AA   +  ++         + + RE+E L  ++
Sbjct: 113 ELLDGIRAASRGETVLAP-------PVAARLMSRLRTPAAPA--AVQPSPRELEVLAAVA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ EI   L I   TV  ++  +  K     R+ A+  A+   ++
Sbjct: 164 RGLSNAEIGRELFIGEATVKTHLQRLFSKLDVDDRTRAVTVAIERGLL 211


>gi|254445229|ref|ZP_05058705.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259537|gb|EDY83845.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 69/233 (29%), Gaps = 17/233 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQK----- 73
            S +     +S ++  ++ ++   +    +      + G              Q      
Sbjct: 1   MSVIQRSKRKSLIMKSVVIIEDQTAIREMVSEFISMLPGYEIVGSFGTGEEGLQGCIKLK 60

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            + ++      +L     L     +   ++            +       +     Y   
Sbjct: 61  PEIVILDVGLPELSGTEVLRGLTLHVPGVKVLVFSGRASSANI---RELLSAGAQGYVDK 117

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                  +  L ++   G  I                            +  L+ RE + 
Sbjct: 118 MDGFDEFKKALDIISGGGTFIGPKMA--------SVMRSLILNPDAASSEIPLSDREKQI 169

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++E  ++ EIA  L IS  TV+N+  +IMRK      +    YA+++ ++
Sbjct: 170 LQLVAESFSTKEIASRLNISVRTVDNHRTNIMRKLNLHDVAALTRYAIKHELI 222


>gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13]
 gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13]
          Length = 199

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 60/222 (27%), Gaps = 28/222 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   +     M  +     G     L          +D  +     
Sbjct: 3   RIVIAEDQRMMLGALGSLLDLEEDMEVVGMAGNGEEAVALFHKYKPDVCIMDIEMPEKTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 +    F                Y         +   
Sbjct: 63  LEAAEEIKGLG----------CKVIILTTFARTGYFQRALKAGVTGYLLKDSPSEDLANS 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+   + +                 D  +G++  LT RE   L  +++GK +
Sbjct: 113 IRSIMSGRRVYAPELM-----------------DDFYGEENPLTEREKAVLELVADGKNT 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L I   TV NYI++I+ K   K R  AI  +     
Sbjct: 156 QEIADELRIKSGTVRNYISNILDKLEVKNRIEAITQSKEKGW 197


>gi|289642641|ref|ZP_06474782.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507550|gb|EFD28508.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V + +  + E     +  L      +  +           R+ AL            
Sbjct: 18  VEPVRVFVLDDHEIVRRGMRELLESQGDIKVVGEAGLAAEALRRIPAL------------ 65

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      D+ R +     +    +L                      
Sbjct: 66  ---RPDVAILDARLPDGSGIDVCRDIRSGTSEVPCLIL--------TSHDDDEALFAAIM 114

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +     ++                   +          
Sbjct: 115 AGAAGYVLKQIRGNDLIGAVRTVASGQSMLDPAVTQR-------VLTRLRDGAPEDRLLS 167

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE + L  I+EG T+ +IA  + ++  TV N ++SI+ K    +R+ A  +A + 
Sbjct: 168 TLSERERQILGLIAEGLTNRQIASRIHLAEKTVKNNVSSILEKLGLTSRTQAAVFATKL 226


>gi|254511393|ref|ZP_05123460.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
 gi|221535104|gb|EEE38092.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium KLH11]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 21/234 (8%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           S +L  +   +     T     L + +   H      D   +Q       + +       
Sbjct: 8   SQILEDLENTNTLDELTSVSVQLRDRLQIDHITYHWVDGAGDQYG----FTTYSDAWDAR 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAG-MDNRYCSLTFDVA 138
                  +   V+    + F  V                      G  +  Y       +
Sbjct: 64  YREKNYHRIDPVILGCFQRFHAVDWKQLNWSGKAVRAFLQDAQDHGVGNQGYSIPLRGPS 123

Query: 139 RIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVE 192
                  +      +  +  +     ++ L+A +       +  +   +    L+ RE++
Sbjct: 124 GQFALFTVNSTCDDVAWQAFITNYGRDLILVAYFLNRKALEFAQNRQPETTRALSPREID 183

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +T ++ G +  ++A  L IS +T+  YI S   K   +  + AIA A+   ++
Sbjct: 184 AMTLLALGYSRAQVAHSLSISEHTLRAYIESARSKLGAQNTTHAIATALSRGLI 237


>gi|254387494|ref|ZP_05002733.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294815121|ref|ZP_06773764.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443484|ref|ZP_08218218.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701220|gb|EDY47032.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327720|gb|EFG09363.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 60/229 (26%), Gaps = 14/229 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  ++     +             G     L R        +D 
Sbjct: 16  RVRVLVAEDQSAVRAGLVLILRSAPDIEVVGEA-----PDGEEAVRLARELRPDLVLMDV 70

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +                 L    F              + +     +
Sbjct: 71  QMPRLDGVSATRQIVADSLAD---------VLVLTTFDLDEYIFGALRAGASGFLLKNTE 121

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   +  +     +I       +    A    +             LT RE E L+ 
Sbjct: 122 AADLLAAVRTVARGEGLIAPAVTRRLIAEFAAPRRVRGPGGPDPSVLDVLTRREREVLSA 181

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EG ++ EIAV L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 182 VGEGLSNAEIAVRLSMAEATVKTHVSRLLNKLELRSRVQAAVLAQELGI 230


>gi|297580291|ref|ZP_06942218.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
 gi|297535937|gb|EFH74771.1| transcriptional regulator UhpA [Vibrio cholerae RC385]
          Length = 208

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +      A     +         +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFHA-----LTQSEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 215

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 84/220 (38%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            HL    D    ++ +   + +      +T   G     L+   +      D ++     
Sbjct: 10  KHLMLVDDDPNLILLVKDYLEFRGY-QVITAENGREALELLEEQIPDLIICDVMMPQMNG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           ++LV+ +  +   ++  VL    +        + + +       + Y    F+   +   
Sbjct: 69  YNLVQHIRENLATEWVPVLFLSAKGQ------IQDRVKGLNTGADVYIVKPFEPEELVAQ 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                   L+  + ++      +   ++ ELT RE++ +  +++G  +
Sbjct: 123 V----------ESSLKQASRLIKHHNSSFSDRPTIKVRRNVELTPRELKVVKLVAQGMAN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA I+ +S+ T+ +++++++ KT    R+    +A+ +
Sbjct: 173 RDIAEIMEVSQRTIESHVSNMLGKTGLHNRTELARWAIES 212


>gi|229820935|ref|YP_002882461.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566848|gb|ACQ80699.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 220

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 10/220 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D        +  + E       VG +       DL    + D ++       +
Sbjct: 1   MIRVVVADDQALIRAGLRMILENADDMELVGEADDGAAAADLAIGTRPDVVLMDVRMPGV 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A            R        F                +         +   + +
Sbjct: 61  DGLEATRRIRAALPDGPRILV--LTTFDLDEYVYAALRAGAGGFLLKDALATDLLSAIRV 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     I+       +  +  +  +          +   LT RE E L+ I+ G ++ EI
Sbjct: 119 VAAGDAIVAPPITRRL--IERHIGSPHDPLPRTEAELRVLTSREREVLSLIARGLSNAEI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L ++  TV  ++++I+ K   + R  A+ ++    +V
Sbjct: 177 AGRLFVTEGTVKGHVSAILAKLGLRDRVQAVIFSYECGLV 216


>gi|327406023|ref|YP_004346861.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327321531|gb|AEA46023.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 205

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             +  +      L  +I  D  + W        E +       +          D  +  
Sbjct: 5   CIIEDILDIQQGLRSVIESDDRLQWVRSFETAEEAIEC-----IPKLKPDVVITDINLPG 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + V      E     + +Q    +   ++    +           Y     +  +I
Sbjct: 60  KNGIECV-----FELKSIDSEIQ---FIMFTIYEDNDQVFEALKAGATGYILKNTNPDKI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISE 199
              ++ L   G  +      ++           +S++       +L + RE E L  +S+
Sbjct: 112 IEAILELHEGGSPMSPKIARKV----------LQSFNKAENPVLQLISKREREVLDLLSK 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    EIA  L I+ +TV  ++  I  K   + ++ A+  
Sbjct: 162 GYLYKEIADKLNITLSTVKRHLNHIYEKLQVQNKTEAVNK 201


>gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus GG]
 gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus GG]
          Length = 202

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S +S L    D L  +                    GA+ +  ++  
Sbjct: 2   ITLYLAEDQSMLNSALSQLLNLEDDLTVIGSAQD---------------GATAWQAIQSQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +                 +    F          A   
Sbjct: 47  PPDVAILDIEMPKMTGLDVADQIHTHALP--------TKVIILTTFAQKVYFQRAIAAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 99  NGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANM----------------VTAESNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN  +
Sbjct: 143 ERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWL 201


>gi|325282015|ref|YP_004254557.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
 gi|324313824|gb|ADY34377.1| two component transcriptional regulator, LuxR family [Odoribacter
           splanchnicus DSM 20712]
          Length = 223

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 77/242 (31%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ I +  + +     +  L +  D +  +        +   +               
Sbjct: 6   LKKLRIYIVDDHKLFREGLKLLLSTQDFVHHIYEASNGRDFIENL--------------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D ++      ++    A  +  +          +   ++           
Sbjct: 51  -----SFVDCDLVLMDIEMPEMNGIEATEQALRIRP---DLKVIVLSMYGDEQYYYKMVD 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +      + ++   +  +         + L  I              +     D 
Sbjct: 103 VGVKGFVLKNSGIEKVIAAIRAVAAGENYFSEELLVNILNNMRDGGQHKPEPET---PDN 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E++ RE+E L  +  G ++ EIA  L IS+ TV+ + A+++ KT  +  +  + YA++N 
Sbjct: 160 EISERELEILYHVCLGLSNQEIADKLFISKRTVDKHRANLLSKTGCRNTAALVMYAIKNK 219

Query: 245 IV 246
           ++
Sbjct: 220 MI 221


>gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
 gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio
           nigripulchritudo]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 13/231 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D +  ++  +       +++ L   +   +F                + + +      
Sbjct: 1   MEDSIKGLMVANTVSDVKCQLHKLANLLEFDNFAFGIKVNNLTGIPTIDMINTYSDQWND 60

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFH-------TLPENITPPAGMDNRYCSLTFDVARIR 141
               +       ++   +    P+              I     ++  +   +     + 
Sbjct: 61  IYKKNNFISKDPIVLEGSATSNPIIWEESLKPTHEIFEIANDFNLNIGWSKPSHKPNGVS 120

Query: 142 IGLMLLFPKGRIILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                      +   +   +      +  +A        S    +     LT RE+E L 
Sbjct: 121 SLFSFSRSSESLTEAELWKQTPYLLWVANIAEQAFERVNSGYHGYSLVEVLTPREIEILK 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W +EGKT+ E ++IL IS  TV  +I + ++K  T  ++ A+  AV   +V
Sbjct: 181 WSAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAVTLGLV 231


>gi|307700729|ref|ZP_07637754.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
 gi|307613724|gb|EFN92968.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
          Length = 189

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 54  EYVGAS---HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           E VG        LV+        +D  +      +  R +                 +  
Sbjct: 2   EGVGFDGHHVLDLVQKHHPDVVLMDVEMPKMDGIEATRQIKER--------FPNLGVIML 53

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             F              + + +     A +   + L+   GR +         L+A Y+ 
Sbjct: 54  TNFRHDTWLKEALEAGADGFLTKDAPRADLSAAIKLVAKGGRFMS--AKPFNMLIANYED 111

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F     +      LT  E +    + +GK++ +IA  L    +T+  ++ SIM+K   
Sbjct: 112 PNFIPDPKYTAGKQALTPAERDVWQEVLKGKSNAQIAKTLHSQESTIKTHMTSIMQKFQV 171

Query: 231 KTRSGAIAYAVRNN 244
           ++R+  + ++ +N 
Sbjct: 172 RSRAELLVFSAKNG 185


>gi|229514137|ref|ZP_04403598.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21]
 gi|229348117|gb|EEO13075.1| transcriptional regulatory protein UhpA [Vibrio cholerae TMA 21]
          Length = 208

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 70/226 (30%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +      A     +         +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFHA-----LTQSEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A+++ ++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHQLL 205


>gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens]
          Length = 244

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 67/227 (29%), Gaps = 27/227 (11%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
             +  +    +  G   F     D         +  S++P   +     ++      V+ 
Sbjct: 4   EISYFIERKLKAYGNVLFAYFMMDKSSLSNP--VFISNYPQKCIDTYIDNKLFINDPVIH 61

Query: 104 RPTELFCPVFHTLPENI------------TPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
              +   P      +                   +   Y  +  D       L +     
Sbjct: 62  YSLKRVTPFSWDDNDLAVLRSENEDVAMYLREHDITVGYTFVLHDHDNNLAILTIANNDE 121

Query: 152 RIILRDRL----WEIGLLAAYQAN-MFKSYDVHWGKDFEL--------TGREVECLTWIS 198
           +    D +     ++ +L         K      GK   L        T RE E L  +S
Sbjct: 122 KNDFEDFIKNRENDLQMLLVTTHEKAMKHKHFVKGKTAPLDCLQSALITPRETEVLFLVS 181

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G T  E++  LGIS  TV  +I + +RK        AI+ A+  N+
Sbjct: 182 RGNTYKEVSRTLGISEATVKFHINNSVRKLNVINSRHAISKALELNL 228


>gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 205

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 37/240 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  L    D +  +                    G     L    
Sbjct: 1   MRVLLVDDHPVVRAGLRALLASHDGVDVVAEASS---------------GEEAVALAGST 45

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 +D  + +          +  +E             +    + T  + +      
Sbjct: 46  EPDVVLMDLRLGAGLDGAGATARITAAENPP--------RVVVLTTYDTDADILRAVEAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +        ++  D    +                      EL
Sbjct: 98  ASGYLLKDTAPEVLIESVFAAARGDTVLDPDVAQRLY-------------RRMQQPRVEL 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GREVE L  +++G ++  IA  L +S  TV +++     K    +R+ A+A A    ++
Sbjct: 145 SGREVEVLDLVAQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARERGLI 204


>gi|116670683|ref|YP_831616.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116610792|gb|ABK03516.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 254

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 55/226 (24%), Gaps = 15/226 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-----LLVRWDLFQEQK 73
           R             L R+  LD        +  L E  G          +          
Sbjct: 4   RADLGPSAQDMHTGLIRVFILDDHELVRRGLQELLEGEGFQVVGSSGSAVEATRRIPALH 63

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D  V      D        +       L          F                Y   
Sbjct: 64  PDVSVLDARLPDGTGIEVCRDVRSVDPNLNCL---ILTSFDDEQALRGAVLAGARGYVLK 120

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   L        +            AA       +      +   LT +E   
Sbjct: 121 EIGGTDLIGALRRAAAGESLFDDGV-------AASIVESLVTPQQVDPRIAGLTPQERRV 173

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L  +  G T+ +IA  + ++  TV NY++S++ K   + R+ A  Y
Sbjct: 174 LELVGGGLTNRQIAAEMFLAEKTVKNYVSSLLAKLGFERRTQAAVY 219


>gi|307292969|ref|ZP_07572815.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881035|gb|EFN12251.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 263

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 15/229 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              + L+R        +    +      +G  +  +++          ++V +++P + V
Sbjct: 6   RLRETLSRFNVASSMEALLAALADAATKMGFPYVAMIQHGGLPRLVERALVITNYPAEFV 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLT 134
           R    S       V +    L  P                          G+ +      
Sbjct: 66  RFYTESHAYVIDPVYEVSQLLDRPFSWDEIPGYVDLTGTQSALFEEARLHGLVHGVTVPL 125

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVE 192
              +           +  +     L  + ++AA+                   LT RE +
Sbjct: 126 HIPSESHASCTFARAEPIMASPSLLTTLHIVAAFGFKAGLRLHHASRGHDVPRLTRREAQ 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           C   ++ GK+  EI+ ILG+S  +V  +++   ++     RS  +A A+
Sbjct: 186 CTALVAVGKSDWEISQILGLSETSVRYFVSHAKQRYGVYKRSELVARAL 234


>gi|291302711|ref|YP_003513989.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571931|gb|ADD44896.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 61/237 (25%), Gaps = 25/237 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  ++    + V  +      +  +                    G      VR      
Sbjct: 1   MADDEAMIRAGVRAILASDPDIEVVAEAAD---------------GREAVEAVRKHRPDM 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +           +          +      +    F              + + 
Sbjct: 46  ALLDIRMPKMDGLSAAAEIRR--------IAPEVGVIILTTFGEDEYIARALGDGASGFL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGR 189
             + D   +  G+  +      +       +   L                 K  +LT R
Sbjct: 98  LKSGDPRELIAGIHAVAAGAAFLSPQVAQRVIAELARGSGGGKLSRAATARTKIDKLTDR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  +  G ++ EIA  L +   TV  Y+++I+ +   + R  A   A    +V
Sbjct: 158 EREVLALVGAGCSNAEIAKRLHVVEGTVKAYVSAILTRLEVRNRVQAAIIAYEAGLV 214


>gi|237808304|ref|YP_002892744.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
 gi|237500565|gb|ACQ93158.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
          Length = 215

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 66/240 (27%), Gaps = 32/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
           +++ L  + E   + +  +                      +  + E V G       R 
Sbjct: 2   ISVFLVDDHELVRTGIRRILED----------------VRGLRVVGEAVSGEQAVQWFRE 45

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +      +  + +     D           +   V    P  +      
Sbjct: 46  NQADVILMDMNMPGIGGLEATKKILRFNPDI--------KIIVLTVQTETPFPLKVMQAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +       +   +  +    R I  +       +A   A               L
Sbjct: 98  AVGYLTKCSAPDEMIQAIRAVNSGQRYISPE-------IAQQIALSQVCTPTTDNPFKAL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++    I++G    +IA  L +S  TVN+Y   +  K            A+R  I+
Sbjct: 151 SDREMQITMMITKGDKVQDIAESLNLSPKTVNSYRYRLFEKLNISGDVELTRMAIRYGIL 210


>gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 211

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 30/238 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V + L  + E     +  + + +  +  +           R+ A             
Sbjct: 1   MSTVRVFLLDDHEIVRRGIREMLSETGDVDVVGEASTAAEALRRIPAT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      D+ R +  +  +    +L          +           
Sbjct: 49  ---RPNVAVLDARLEDGNGIDVCRDLRSAHPEIGCLIL--------TSYDDDDALFAAIM 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +     ++                   +       K  
Sbjct: 98  AGAAGYLLKQIKGTDLVGAIRTIAAGRSLLDPAVTQR-------VLTRLREGPAEDRKLA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L  RE + L  I+EG T+ +IA  + +S  TV NY+++I+ K    +R+ A  YA R
Sbjct: 151 ALGERERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 208


>gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 218

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V +VL  ++    + +  +      L  +                    GA    +V
Sbjct: 1   MSAVRVVLADDERMVRTALRVILDAEPDLTVVGEAST---------------GAEAVSVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R +      +D  +           +          + + P  +    F           
Sbjct: 46  RAERPDVVLMDVRMPEIDGIRATEQILAG-------MAEPPRIVVVTTFENDAYVYDALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         +   + L+     ++    +  +   A +  N          +  
Sbjct: 99  VGAAGFLLKRAAAEELVSAVRLVARSDSLLYPAAVRGLA--AEHARNRPPVAPPWVAR-- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G T+ EIA  +G+   TV  ++AS++ K+  + R+ A+  A  + 
Sbjct: 155 -LTEREAEVLRLVATGLTNAEIAGRMGVGPATVKTHVASVLAKSGARDRTQAVILAYESG 213

Query: 245 IV 246
            V
Sbjct: 214 FV 215


>gi|290963130|ref|YP_003494312.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260652656|emb|CBG75789.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 219

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 61/233 (26%), Gaps = 18/233 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +   R                ++     +             GA    L R        
Sbjct: 2   SDTAIRVLIADDQELVRMGFRLILGAQPDIEIVGEA-----ADGAGCVELARRLRPDVCL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      D+ R +A         V      +    F       T        +   
Sbjct: 57  VDIRMPRLDGLDVTRALAGPG------VRAPLRVVVITTFDQDDYVHTALRNGACGFLLK 110

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               + +   +        ++       +                       LT RE + 
Sbjct: 111 DAPPSLLIEAVRAAARGDALVSPAVTVRL-------LKHLSPTRPDPDVGSVLTERERDV 163

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              ++ G+T+ EI   L +S +TV  ++A+I +K   + R    A+A    +V
Sbjct: 164 ARLVAVGRTNQEICDRLVVSLSTVKTHLANIQQKIDARNRVEIAAWAWEQGVV 216


>gi|257067784|ref|YP_003154039.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558602|gb|ACU84449.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 238

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 73/237 (30%), Gaps = 16/237 (6%)

Query: 13  NREDEQRT----SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWD 67
            R D  R     S    +    D  A +  L   +     +  + +   G +     R  
Sbjct: 10  ARPDRPRPEAWASAPIRVLVADDHPAVLSGLVALLDSAPDLAVVAQAGDGETALAAAREH 69

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +  +              L    F      +   A   
Sbjct: 70  RPDVVLTDVRMPGATGIEITPALRETGAH----------VLVISGFDLDEYVLGALAAGA 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186
           + Y   T D  RI   +  +     ++       +   L    +    +     G +   
Sbjct: 120 DGYLVKTEDPQRILAAVRDVHRGDAVLSAAATRAVVAELRGRASGHPAAGRSAVGPEPPF 179

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE + L  +++G+T+ +IA  L +   TV ++++  + K    +R  A  +  ++
Sbjct: 180 TRREEDVLALVAQGRTNQQIARELFVEVTTVKSHLSHALVKLQLDSRVQAALWWQQH 236


>gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 217

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 15/224 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +        + +   G   ++ V         +D  +    P 
Sbjct: 4   VLIADDHAIVRSGIAYLIDKQPTFQVVGQTANGTDTYMRVEQGDIDILIMDLSM----PP 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +      ++Y +++    +   +                 Y   +   + I   L
Sbjct: 60  GESGLITAQRIHEHYPLVR---MIILSMHEEQEYINKAIHNGAMSYVLKSSPDSEILRAL 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKT 202
             +      I      E   L     +   S  V         L+ RE E    ++ G T
Sbjct: 117 TQVSNGENYID-----ENITLTKKDLSQINSDGVDVNLTGYNSLSKREREVFPLVALGYT 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  + A+I+RK   +TR+  + YA+ ++++
Sbjct: 172 NKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHHLI 215


>gi|50120435|ref|YP_049602.1| two-component system response regulator protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610961|emb|CAG74406.1| two-component system response regulator protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 209

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 72/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +    +  +  +         +         +D  + 
Sbjct: 4   VALVDDHIVVRSGFAQLLTLENDIQVVGQYGSAAQAWPH-----LLKQPIDVAVIDIAMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +     +           +   ++ T     +        Y +       
Sbjct: 59  DESGLSLLTRLRQQRPNF--------RAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++   G  +  D L  I           +       +   LT RE E  + +  
Sbjct: 111 LVQAVRVVSSGGLYLCADALHAI-----------RHQQQPPKELLTLTPREREIFSLLIN 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ + A+I+ K   ++    + +A+++ ++
Sbjct: 160 GISVKSIAEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206


>gi|297162250|gb|ADI11962.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 217

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  +++   + +  +      +  +                    GAS   LVR  
Sbjct: 3   ISVLLVDDEQLVRAGLRAILESQPDIRVIGEAAD---------------GASVVPLVRQL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V   P  L    F              
Sbjct: 48  RPDVVAMDVRMPLLDGIEATRAVLR-------AVPDPPRILVVTTFENDEYVYEALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A I   + L      ++    +          A               LT
Sbjct: 101 DGFLLKRARPAEIVHAVRLAAEGESLLFPAAVRSFA-----AARGGNKRAREAMDRAALT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G T+ EIA  L I   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 156 EREAEVLRLMARGLTNAEIAGHLVIGAETVKTHVSAVLAKLGARDRTQAVIAAYESGFV 214


>gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
 gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp.
           GAI101]
          Length = 248

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS-IVSSDWPFDLVRCMALSEKD 96
             D   +    +                 ++    +     +    P          +  
Sbjct: 16  QADSPGAIWAIVQRYARAHEIRMIAYGSVEVQTYGETTFPGIQFGMPTAFKESYIKEQLY 75

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL-------------TFDVARIRIG 143
               + +       P + +  +++      +  Y                 F        
Sbjct: 76  LDNPLPRLAMSRPDPFYWSDAQDLDDLQPAEIAYLDKLKEAGIWPGIAFQVFGPESRNAA 135

Query: 144 L-MLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTWISEGK 201
           + M   P    +  D L E+ L +      F    D        L+ RE+E L WI++GK
Sbjct: 136 VGMCFEPGAPRLSPDALLELQLASQCAHQRFCALTDGPKSPYARLSPRELEVLRWIAQGK 195

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  +A I+GISR+TV+     +  K     R+ A    +   ++
Sbjct: 196 SNSVMADIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISAGLL 240


>gi|148273146|ref|YP_001222707.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831076|emb|CAN02021.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 59/229 (25%), Gaps = 13/229 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V       D  AR++     ++            G      V         +D 
Sbjct: 7   PIRVVVVDDQSLVRDGFARIVDAQPDMAAVGVC-----ADGEQAVARVVELRPDVVLMDV 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +            +    L      T    I         +      
Sbjct: 62  RMPVLDGIEATRRLVEGG------RAEGTRILGLTTHDTDSYAIRMLRAGAVGFLLKDST 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  +              +  L           D        LT RE    T 
Sbjct: 116 AVQLVDAIRSVHNGTFAASMSTTQRL--LERLAVERTAPPDPDTAALDVLTDRERVVFTR 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  G ++ EIA  L I+  TV  ++  I+ K A + R   + +A R  +
Sbjct: 174 LVTGASNPEIARDLSIAEVTVKTHVGHILTKLAVRDRVHLVIWAHRRGL 222


>gi|85858634|ref|YP_460836.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85721725|gb|ABC76668.1| response regulator with a HTH DNA-binding domain [Syntrophus
           aciditrophicus SB]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 16/177 (9%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      ++++ +          VL                 +       + 
Sbjct: 49  DVVLLDISMPGRSGLEVLKDIRAERPKL--PVLILSMHS------EEQYAVRALRAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +       +   +  +    + +      ++ L            D+       L+ R
Sbjct: 101 YLTKASAPDELIGAIRKVSRGRKYVTASLAEKLAL--------ELDADIRKPPHEILSDR 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + +  ++ GKT  EIA  L +S  T++ Y + I+ K   K  +    YAV+N++V
Sbjct: 153 EYQVMLMLASGKTVTEIAEELCLSVKTISTYRSRILEKMNMKKNAELTLYAVQNHLV 209


>gi|312131027|ref|YP_003998367.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311907573|gb|ADQ18014.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  + +     +SH+ +  +L   +           ++  +               
Sbjct: 2   IKVGIVDDHDLILHGLSHMLSHQNLCTVVFQASSGEDTYNKLQEI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L   +  S              +                   
Sbjct: 47  PIDVLLLDIELPDTNGVELCGKLLKSYPT--------LKIIALTNHDETMWVRKMLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +  +F   + +       I                    + +LT
Sbjct: 99  LGYLLKGTDKGNLLQAISTVFEGQQFLDPQVQNAILQQTL--------SGRKNSIEVKLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+   ++ EIA  L +S  TV  +  S+ +K   K  +G +  A+   ++
Sbjct: 151 KRETEILALIANEYSNQEIADKLFLSIRTVEAHRNSLNQKLDIKNTAGLVKEALLRGLI 209


>gi|330808400|ref|YP_004352862.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376508|gb|AEA67858.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 219

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +            +  L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVMDIPGYAVIGEASDGTQLVELVERL---------------N 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +  +              L   +       +       +
Sbjct: 49  PDIVLLDISMKDTCGLDALQQLKRAR--------PHSKVLILSMHTDPALIMQALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         ++  L  L    R +          +        + +     +   LT 
Sbjct: 101 GYLLKDTTANELKHALEALRNNERYLSPAIA---HTVINQALTRVQKHQSDPARAHNLTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  L +S  TV  + A IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIANGLNLSIKTVETHRAQIMKRLQIHDVAGLVLFAVREQII 215


>gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 216

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +        + E   GA+   L+         LD  +      
Sbjct: 5   ILIVDDHWVVREGLKLVLETNDSYEVIGEAGEGATALKLIEELQPDVILLDLYMPQMSGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D ++ +   + +    V+          ++     I   +     Y         +   +
Sbjct: 65  DTMKALREKQNET--PVI------ILTTYNEDDLMIKGLSLGAKGYLLKDTSRENLFRTI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++  +    +        N  ++          LT +E   L  ++ G  S 
Sbjct: 117 ESALRGETLLQPEITARV----FAATNKKEAKLESRESSLVLTDKERHILKSVAHGFKSK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  +GIS  TV  ++ +I  K    +RS A+A ++   I+
Sbjct: 173 EIAFDMGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGIL 214


>gi|301059373|ref|ZP_07200300.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
 gi|300446602|gb|EFK10440.1| putative Oxygen regulatory protein NreC [delta proteobacterium
           NaphS2]
          Length = 220

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 62/224 (27%), Gaps = 13/224 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D    +  L   +        + E + G       R        +D  +    
Sbjct: 7   TRILLADDHRVVIEGLRSALEREPEFQVVGEALDGHEAVEKARVLKPDIIIMDISMPRLD 66

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                + +          ++                 +T      + +      +  + +
Sbjct: 67  GIAATKKIKE--ISPESRIVIYTMHS------DKDYVVTLFKEGVSAFVLKEDPLNELIL 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +   G         +   +                    L+ RE+E    +++G++
Sbjct: 119 ALKAVKGCGTYFS----TKAPTILVRHMETLTQSCRETEISEILSQREMEVFLLLAKGES 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IA  L IS  TV  +   IM+K    +       A+RN ++
Sbjct: 175 TKAIARALFISPKTVETHRYHIMQKLEADSVVALTRLAIRNGLI 218


>gi|258620778|ref|ZP_05715813.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573]
 gi|258586976|gb|EEW11690.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573]
          Length = 207

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGN---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + D        LT 
Sbjct: 101 GYLLKDTEPDQLVTLLKQAMQGEKAFSESVER-----------YLLNRDEGSNPFEALTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|73539827|ref|YP_294347.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72117240|gb|AAZ59503.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +         +              ++                  
Sbjct: 2   IRVLIADDHEIVRAGLRQFLADEPDIQVTGEAGSGDEVMAQLR---------------DG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D+++ +   +       L        P        I       
Sbjct: 47  EFDVLVLDISMPERNGIDVLKLIRQRK-----PDLPVLILSTYP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +                       L+
Sbjct: 99  SGYLTKESAPDDLVKAIRTVAQGRRYVSAAVADLLIGGLDKPTEQPVHQM--------LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +S G++   IA  L +S  TV+ Y + I+ K   KT +    YA++N +V
Sbjct: 151 EREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209


>gi|326626887|gb|EGE33230.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 270

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 61  MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 108

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 109 ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 157

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I        +  ++       D 
Sbjct: 158 AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFI--------SNTRTPKGGHH-DM 208

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 209 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 268

Query: 245 IV 246
           ++
Sbjct: 269 LL 270


>gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 203

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S +S L    D L  +                    GA+ +  ++  
Sbjct: 3   ITLYLAEDQSMLNSALSQLLNLEDDLTVIGSAQD---------------GATAWQAIQSQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +                 +    F          A   
Sbjct: 48  PPDVAILDIEMPKMTGLDVADQIHTHALP--------TKVIILTTFAQKVYFQRAIAAQV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 100 NGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANM----------------VTAESNPLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN  +
Sbjct: 144 ERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWL 202


>gi|225155470|ref|ZP_03723961.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224803771|gb|EEG22003.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ ++L  +       +  L         +                    G     L 
Sbjct: 1   MKRITVLLAEDHAIVREGLRSLLALDAAFEVVGEAST---------------GRQAVDLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F+  R + L        +      L               A
Sbjct: 46  RTLCPAVVVMDIAMPVLNGFEATRQILL--------IAPATKVLVLSAHSDDEYVAKMAA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +           L  +   A       ++         
Sbjct: 98  VGASGYLVKQNSGQVLVRAIKEIVAGHPYFSPSILKRLQDAARR---SLETGTPRAKPSQ 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG  + ++A  LGIS  TV  +   +M K      +G   +A+   
Sbjct: 155 SLTTREAEVLQLVAEGAANKQVAAELGISIKTVEKHRQQLMNKLDIHDTAGLTRHAIATG 214

Query: 245 IV 246
           ++
Sbjct: 215 VI 216


>gi|52787684|ref|YP_093513.1| YfiK [Bacillus licheniformis ATCC 14580]
 gi|52350186|gb|AAU42820.1| YfiK [Bacillus licheniformis ATCC 14580]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 34/235 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  ++      +  + +  D    +  ++                G       R 
Sbjct: 20  KIKVIIADDNSFIREGMKIILSTYDEFEVLATVED---------------GLQAVEFCRA 64

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + +    +  R ++ +    +              F      +      
Sbjct: 65  QAVDIALLDVRMPNMDGVEAARLISETGAKPF----------ILTTFDDDEYIVAAIRNG 114

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y     +  RIR  +  +F    ++         ++     +    +     K  E 
Sbjct: 115 AKGYLLKNAEPERIRDAIKSVFNGHIVMQD-------IILDKIKSNLAEHKEAEPKIDES 167

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             T RE+  +  I+ G ++ EI+  L IS  T+ NYI+SI+ KT  + R+    Y
Sbjct: 168 LFTERELGIMALIARGLSNKEISKELFISEGTIANYISSILGKTGLEHRTQIAIY 222


>gi|240168620|ref|ZP_04747279.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium kansasii ATCC 12478]
          Length = 215

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L      L  +           R+ A                
Sbjct: 2   VTVFLVDDHEVVRRGLIDLLDADPQLEVVGEAGSVGEAMARIPAA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     +    +L          + +    +       
Sbjct: 47  NPDVAVLDVRLPDGNGIELCRDLLSRMPELRCLIL--------TSYTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +        +  +           LT
Sbjct: 99  SGYVVKDIKGMELARAVKEVGAGRSLLDNRAAAAL-------MSKLRGGVEKPDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A + 
Sbjct: 152 DQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATQL 207


>gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 189

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALNLIESLKPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  P--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QELMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 189

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIETLKPDISIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  S--------CKVIILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMRGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIARALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     V
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWV 189


>gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 200

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 15/178 (8%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D+ +      ++VR +           +     L    +              +
Sbjct: 32  PDIVIVDARLPGLNGLEIVRRLNRQ--------MPETRFLVFSAYQNPSIVKDMLEAGAH 83

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T ++     GL ++   G     +        A    ++  +          LT 
Sbjct: 84  GFVEKTANLREFINGLGIVAEGGTFFGPNV-------AELIRSVVANPTNVQRSKDTLTE 136

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I+EG ++ EIA  LG+S  TV+N+  ++MRK      +    YA++N ++
Sbjct: 137 REREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNVASITRYAMQNGLI 194


>gi|145295913|ref|YP_001138734.1| hypothetical protein cgR_1838 [Corynebacterium glutamicum R]
 gi|140845833|dbj|BAF54832.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 77/239 (32%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + ++ L    D    +  +        R        G    +L+   
Sbjct: 2   IRILLADDHPVVRAGLASLLASEDDFEIVDMVGTPDDAVARAAE-----GGVDVVLMDLR 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              +  ++         +  R +   +      V+          + T  + +   +   
Sbjct: 57  FGDQPGIEVA----GGVEATRRIRALDNPPQVLVV--------TNYSTDGDVVGAVSAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  G+        ++ +    +I                       L+
Sbjct: 105 VGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKI-------------MGRMNNPMTALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E ++ +++G+++ EI   L ++  TV +++  +  K    +R+ A+A A +  I+
Sbjct: 152 AREIEVVSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210


>gi|54025004|ref|YP_119246.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016512|dbj|BAD57882.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 218

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    L    L     +D  +     
Sbjct: 3   RVLLVDDQPLIRSGFRALLDLEDDIEVVAEAGDGAEGIALAARHLPDIALIDIRMPVLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A          L     +    +                +             
Sbjct: 63  IETTRRIAA------DPALAGVHVVVLTNYGMDEYVFHALRAGAAGFLVKDIRPEDFLHA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++       +                   +   LT RE E +   + G ++
Sbjct: 117 VRVAARGDALLAPSITRRL------IDRFVTEPLAADVETAGLTTREREAVVLAARGLSN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           DEIA  + IS  T   +I   M K   + R+  +  A  + +V
Sbjct: 171 DEIAERMVISPLTAKTHINRAMTKLHARDRAQLVIRAYESGLV 213


>gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 237

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 23/235 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D   R+       +   ++  ++   GA        +       D ++      +
Sbjct: 5   LVVDDDRTLRITLTRALENMGYQVQQVSS--GAEALEACVKNPPDLVVSDVMMPEMDGIE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +  +         Q    +F      L + I   +   + Y     +   +   + 
Sbjct: 63  FCRRLRAT------PSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIE 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFK---------------SYDVHWGKDFELTGRE 190
               + R I    +  + L A+                        +        LT  E
Sbjct: 117 AQLERTRRIHALIVQLMQLNASSAVTELANQAKTAQATEVSAPQEEETVTPTPLPLTPAE 176

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
                 + +G T+ +I+  L IS  TV  +++SI+ K     R+  I +A  N  
Sbjct: 177 ERVFWEVIQGLTNKQISNRLFISPRTVQTHLSSILNKLKLGNRAQLIRFAYENGY 231


>gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 219

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 65/230 (28%), Gaps = 14/230 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
                V+ +    D       L   +     +  + E   G      +         LD 
Sbjct: 1   MTPPPVARILLADDHALVRSGLRMILDAEPDLRVVVEAADGYQALNALEQTPVDIAILDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R ++                L   +               + Y   +  
Sbjct: 61  AMPRMTGLQAAREISRK--------YPHVRILILSMHDNEQYFFEALRAGASGYVLKSVA 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +             +    +  +        N  +  D   G     T RE E L  
Sbjct: 113 DLDLLKACRATLRGEPFVYPGAVTALIQ---DYLNRARHGDDLPGTIV--TSREEEVLKL 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+EG ++ EIA  LGIS  TV+ + A+++ K   + R     YA+R  ++
Sbjct: 168 IAEGYSTREIAGTLGISAKTVDRHRANLLAKLGLRDRLALTRYAIRVGLI 217


>gi|320106955|ref|YP_004182545.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319925476|gb|ADV82551.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 208

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 69/244 (28%), Gaps = 38/244 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
               ++ I+   +       +++   + + +  +                          
Sbjct: 1   MSSTRIRILCVDDHPIVRDGIAYALQQQNDMELVAEATNGHEAIEAFRK----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      +    +             +   +    +    +    
Sbjct: 50  ----HKPDVTLMDLQMPGMSGIEATAEIRKE--------FPQARIVILTTYSGDIQASRA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  ++   R I          +A+  AN + +       
Sbjct: 98  LKLGAVGYLLKGMLRTELVDTIRRVYAGQRHIPP-------QIASEIANHYSADA----- 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE++ L  +S G ++  +A  L IS +TV  ++ SI+ K     R+ A+  AV+
Sbjct: 146 ---LSEREIQVLREVSAGSSNKSVADKLFISEDTVKGHMKSILAKLQANDRTHAVMIAVK 202

Query: 243 NNIV 246
              +
Sbjct: 203 RGFI 206


>gi|300934384|ref|ZP_07149640.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium resistens DSM
           45100]
          Length = 241

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 69/250 (27%), Gaps = 33/250 (13%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            T  V+ +    D       L   +     +  + E   G +   +V+        +D  
Sbjct: 1   MTEQVTRIVVADDEALLRQGLVLMLDGAEGIEVVGEASNGKAAVEVVQRVRPDVVLMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D V  +     D           +    F T    +         +   T   
Sbjct: 61  MPVMTGIDAVGALRELGVD--------VPVIMLTAFDTDSFILRSLEAGAVGFLLKTTAP 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------------ 185
             +   +       +++  + L ++  +A                 F             
Sbjct: 113 EALVRSIKAAAAGQQLLSAEVLAKLVGMAGNAEERLGENGDGEAVRFGSTLPDSGSDAVA 172

Query: 186 -----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE E    I++G  + EIA  L IS  TV  ++A I+ K     R 
Sbjct: 173 SEAFPTTHLEALSPREKEIALLIAQGLGNAEIAEKLFISMPTVKTHVARILEKLQASNRV 232

Query: 235 GAIAYAVRNN 244
             IA AV   
Sbjct: 233 Q-IAIAVIRG 241


>gi|293610045|ref|ZP_06692346.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|292827277|gb|EFF85641.1| two component transcriptional regulator [Acinetobacter sp. SH024]
          Length = 211

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     +VR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDHADVEVIGQAES---------------GEEAIAIVRQK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  +  D           +        P          
Sbjct: 47  HPQVVLLDVNMPGIGGVETTRRLLQTAPD--------TKVIAVSGLVEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPITEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K A  +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDVKLTHLAIRYGLI 209


>gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 189

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 189

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLQPDVSIMDIEMPIQSGLDVAETLQKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|134103056|ref|YP_001108717.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008989|ref|ZP_06566962.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915679|emb|CAM05792.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 215

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  ++E     +  +      +  +                    G+    LV   
Sbjct: 3   VKVVLLDDEELVRGGIRLILDLDPDIEVVAEGSD---------------GSVAAELVAMH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + +    ++ R +           +          F              
Sbjct: 48  RPDVVLTDIQMPTVGGLEVTRRLTRL---PDPPAVA-----VLTTFDLDEYVYAALQNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + ++     ++      ++    +  ++   +      +  ELT
Sbjct: 100 AGFLLKDTPPRDLAAAVHVVARGEAMLSPRITTKL---LSTFSSGATAAQAAKARMEELT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +++G ++ EIA  L +S +TV  +I  IM K     R+     A    +
Sbjct: 157 AREREVAVAVAQGMSNAEIAGNLHMSLSTVKVHIGRIMTKLGMANRTQVAILAHDAGL 214


>gi|159045392|ref|YP_001534186.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157913152|gb|ABV94585.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 236

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 66/237 (27%), Gaps = 20/237 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
                  L  +           R++ L E +   +F     D    +      +  +   
Sbjct: 2   HQGLESFLEDLQEAKSLDDVQARLFGLRESLEVENFAYHCLDASGNKYG----AMTYDAP 57

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH----------TLPENITPPAG-MDNRYCSLT 134
            V+     +  +   V++   + F PV                      G  +       
Sbjct: 58  WVKRYIEMDYARVDPVIKGTYQRFHPVDWKQLDWSPKAAREFMGEALETGVGNQGLSVPV 117

Query: 135 FDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGR 189
                      +              + L    L A +        +         L+ R
Sbjct: 118 RGPNGQFAVFSVNNRATDAAWESYQKEYLKTFILAAHFINQRALELEEDINPTAKPLSPR 177

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + LT ++ G +  ++A  L IS +T+  YI S   K      + A+A A+   ++
Sbjct: 178 ESDALTHLANGLSRGQVAEKLKISEHTLRVYIESARFKLGAANTTHAVARAMVRGLI 234


>gi|120601720|ref|YP_966120.1| two component LuxR family transcriptional regulator [Desulfovibrio
           vulgaris DP4]
 gi|120561949|gb|ABM27693.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris DP4]
          Length = 216

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  + +     +  L   +     +                    G     +V  
Sbjct: 2   PITVVIVEDLDIVREGIKALLDANGEFIIVGEASD---------------GIEALRIVEK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + +R +            +    L               +  
Sbjct: 47  HAPDIVLMDLTLPVMEGAEAIREIKRRR--------ETTKVLALTAHKKDSLIYRTLSAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
            + Y         +   +  +    R I  +       ++    + F  +          
Sbjct: 99  ADGYLLKNASRDILFQAMQTVLAGRRYISPE-------ISDLLIDDFLRHGRRDEASMLD 151

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + L  ++EG  +  +A  L IS  TV  + A++ RK  T + +  + +A+ + 
Sbjct: 152 LLSDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTASTAELVTFAIEHG 211

Query: 245 I 245
           +
Sbjct: 212 L 212


>gi|108760620|ref|YP_631897.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108464500|gb|ABF89685.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 223

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 13/231 (5%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   P     L +++     +         T   G +    +     Q   LD
Sbjct: 4   DPTRIFVVEDQPQLLKNLVKVLATFPELEVVG-----TSQEGEAAVEDIVQLRPQLVLLD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +       + +        +    ++         F    +         + Y     
Sbjct: 59  LELPGINGIQVTQR-----VKRRAPEVEIL---ILTSFDDETKVYEAIQAGASGYLVKRV 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              +IR G+  +   G ++                      +      + LT  E E L 
Sbjct: 111 GPEKIRSGIQEVMEGGTVLEPIIAKRFWNYFQSVQAKSTQAEKKLENPWALTPLEFEVLR 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++G ++ E+  ++ + R TV  +++ I RK    +   A+  A+R  +V
Sbjct: 171 YVAKGLSNAEVGHVMTLERRTVRTHLSHIYRKMGVNSHVEAVVMALRAGVV 221


>gi|304390336|ref|ZP_07372289.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326092|gb|EFL93337.1| possible response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 221

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 21/240 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +D      +  L  R D +              R+                  
Sbjct: 1   MRVAIIDDDAFARDAMKTLLGRVDGITVSWTAGTASEALARLNQ------------DETA 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +      +LVR                           +           
Sbjct: 49  QPQVFLVDISMPGMNGIELVRR-----LHVLSPTSAVIMISVLTRADKI---REAFRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFEL 186
             Y     D A I   L        +       ++  +L    A +          D  L
Sbjct: 101 TGYFVKEDDPALIAENLGKALAGELVFSPTCSRQLISVLTDDAALVAVKRHAGEPSDTVL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT +SE +T+ +IA  L IS NTV  +I SI++K     R+GA+A+ +R  I+
Sbjct: 161 TPREKEILTLMSESRTNSQIASRLKISENTVKTHIKSILQKCDAADRAGAVAHGIRQGII 220


>gi|327404698|ref|YP_004345536.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320206|gb|AEA44698.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 217

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 77/246 (31%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN E+ ++ +++  + +     +  L  +      +   +        +           
Sbjct: 1   MNSEV-KIKLLIVDDHQMIIDGIKSLLRKEKQFEFIAEANSGEEALELLQ---------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      +L++ +  +        ++            + + +
Sbjct: 50  -----NHRPDILITDISMPGMSGNELIKALKSA-----DPEMKILVVSMHNDPEIIADIV 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   L  +         + L              K      
Sbjct: 100 MLE---AEGYILKNTGRKELTAALEKIADGSTFYSEEVL-------LSLMKRQKKEFRKD 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +L+ RE+E +  I+   ++++IA  L IS+ TV  +  +I +KT  KT  G I +A
Sbjct: 150 LEVAQLSNREIEIIRLIALEYSNEKIAEELFISKRTVETHRKNINQKTNIKTVVGLIKFA 209

Query: 241 VRNNIV 246
           +RN +V
Sbjct: 210 IRNELV 215


>gi|312200777|ref|YP_004020838.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311232113|gb|ADP84968.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 225

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 60/219 (27%), Gaps = 11/219 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G +   L R         D  +     
Sbjct: 10  RVLVADDQEIVRTGLRMILDAQPGIEVVGEAADGLAAVELARRLRPDVCLFDIRMPGLDG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +A         V+          F                +         +   
Sbjct: 70  IEATARLAGPGVADPVAVV------VITTFDLDEYVYAALRAGARGFLLKDAGPDLLAQA 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I       +                       LTGRE + L  ++ G+T+
Sbjct: 124 VQAAASGDALIAPAVTARL----LAAFADAGPGRPPRQPVEPLTGREEQVLAAVARGRTN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +EIA  L I+ +TV  ++AS+M K A + R     +A  
Sbjct: 180 NEIAAELYITLSTVKTHVASLMAKLAARNRVEIAIWAYE 218


>gi|74317308|ref|YP_315048.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056803|gb|AAZ97243.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 209

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       + H+ + S  +              ++                 +
Sbjct: 2   IRVLIADDHAVVRQGLRHVLSASPDIVVAAEAADGFEVLEKIRK---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  + +    DL++ + L        +L                         
Sbjct: 47  AFDLVCLDLSMPNLSGIDLIKRIRLD--CTTLPILVLSMHN------EAQFAARALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    + I    + E+                      +L+
Sbjct: 99  AGYLTKDSDPETLIGAIRKVASGRKFIDPTLVDELIFEKILTDERA--------PHEQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  I++G++ ++IA  L +S  T++ Y A  M+K      +  + YA+ ++ +
Sbjct: 151 DREFQIVRLIAQGESLNQIADKLSLSAKTISTYKARSMQKLGISNHTELVRYAIAHHWI 209


>gi|21218760|ref|NP_624539.1| LuxR family two-component response regulator [Streptomyces
           coelicolor A3(2)]
 gi|5777679|emb|CAB53428.1| putative luxR family two-component response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 233

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V + L  + E     V  L      +  +          +R+ AL             
Sbjct: 12  SPVRVFLLDDHEVVRRGVHDLLDDEPDITVVGEAATVEQALVRVPAL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       + R +     D           L    F      +     
Sbjct: 59  --RPDVAVLDVRLPDGDGVTVCRELRSQMPDLAC--------LMLTSFDDEEALLDSIMA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y       + +   +  +     ++      ++                       
Sbjct: 109 GAAGYVLKQIQGSDLVSAVRTVARGQSLLDASATTKLMARLRGGGQQPVEEPEMLP---G 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A + 
Sbjct: 166 LTDREREILELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223


>gi|328885076|emb|CCA58315.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 217

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 15/227 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R             L  ++     +             G     L R        +D  +
Sbjct: 4   RVVVAEDQSAVRAGLVLILGSAPDIEVVGEA-----ADGERAVALARELRPDLVLMDVQM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                      +                 L    F              + +     D  
Sbjct: 59  PRMDGVTATGIVTSEGLAD---------VLVLTTFDLDEYVFGALRAGASGFLLKNADAR 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWI 197
            +   +  +     +I       +    A  +   +          + LT RE + L+ +
Sbjct: 110 ELIEAVRTVARGEGLIAPAVTRRLIAEFAAPSRPARPAGGTDPGVLDALTPRERQVLSKL 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EG ++ EIAV L ++  TV  +++ ++ K   ++R  A   A    
Sbjct: 170 GEGLSNAEIAVRLDMAEATVKTHVSKVLGKLELRSRVQAAVLAQELG 216


>gi|325002947|ref|ZP_08124059.1| NarL family two-component response regulator [Pseudonocardia sp.
           P1]
          Length = 236

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IVL  +       +  +  R D L  +                           V  
Sbjct: 27  PIRIVLVDDHSIMRQGLRAVLEREDDLRVVGEAGSAPEAFAA---------------VAA 71

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              Q   LD  ++S    D +                    L    F      +      
Sbjct: 72  GRPQVVLLDLKLASGPQTDGLEVCRKL-----CADHPGIGVLVLTTFAEDRLVVESVQAG 126

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +   +  +                  A   + M +S          L
Sbjct: 127 ARGYVVKDVDTTELVRAIRAVSRGESAFD----------ARSASAMVRSLSGGMPDRERL 176

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L  ++ G ++  I   L IS  TV  ++ ++MRK     R+ A+  A +  ++
Sbjct: 177 TDRELDVLRLLARGLSNRAIGAELFISETTVKFHVGNLMRKLMVSRRAEAVYAATKLGLL 236


>gi|313837284|gb|EFS74998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928042|gb|EFS91873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972055|gb|EFT16153.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907167|gb|EGG26933.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 217

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           ++    +  + E   G     +VR        +D  +     
Sbjct: 2   RIALADDQKLVRQGFRLILAAEPDITVVAEASNGVEAIDVVRQATPDVVLMDVQMPVMDG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +      K          +    F              + +     +   +  G
Sbjct: 62  IEATTRIREFSDVKI---------VILTTFDRDDYLFDALDAGASGFMLKNAEADLLVTG 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++  +    +       A           +   LT RE+E    ++ G ++
Sbjct: 113 LRQVAEGHALLAPEVTRRV------IARSASRLAKLDRRVENLTSREIEVTRLVARGLSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  +++S + K   + R   +  A  + ++
Sbjct: 167 AEIAAELTVSEATVKTHVSSCLTKCDLRDRVQLVVLAYESGLI 209


>gi|284992805|ref|YP_003411359.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066050|gb|ADB76988.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 218

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 9/221 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYA----LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           +  R+  +D        + A      + VG +  +    +  +    D ++         
Sbjct: 1   MTPRVYLVDDHAMVRSGVRAELGGAVDVVGEAADVAGAVEGIRATVPDVVLLDVHLPGGG 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               L         ++        V     + I         Y + +     +R  +  +
Sbjct: 61  GRAVLETLRAELPSVRWL---ALSVSDAAEDVIAVIRAGARGYVTKSISGPDLRDAVARV 117

Query: 148 FPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDE 205
                +       + +   AA   +  +  D       +L + RE E +  ++ G T  E
Sbjct: 118 ADGDVVFSPRLAGFVLDAFAATTPSAPQPEDPATDPGLDLLSAREREVMQLLARGYTYRE 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L IS  TV ++ ++++RK     R+    +A  N ++
Sbjct: 178 IGSRLFISVKTVESHASNVLRKLQLSNRNELTRWAATNRLL 218


>gi|159039733|ref|YP_001538986.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157918568|gb|ABV99995.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 228

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 7/204 (3%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 + A  + VG +  +          + D ++      +      L    + +   
Sbjct: 32  AGVRAELGAHVDVVGEASTVAEAVSRIASTEPDVVLLDVHMPEGGGRAVLEAIRRTHP-- 89

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                L   V     + I         Y + T     +   +  +     +        +
Sbjct: 90  -HVRFLALSVSDAAEDVIGLIRSGARGYVTKTISPDDLAAAVRRVADGDAVFSP----RL 144

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                          V   +  +LT RE E L  ++ G    EIA  L IS  TV  +++
Sbjct: 145 AGFVLDAFAARPDAPVSDPELDQLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVS 204

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK    +R     +A    +V
Sbjct: 205 NVLRKLQMSSRYELSRWAADRRLV 228


>gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 250

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 12/193 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV +       +D  +      ++ R + L+  +           +     +  
Sbjct: 55  GQQAIRLVDYSNPDIIVMDVDLPGVNGIEVARTVKLNHPNIG--------VILLSDINDQ 106

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y S T D   +   + ++      I    L     +AA   + F+  
Sbjct: 107 EGIVKSLRAGVAAYLSRTIDWDDLINSVDMVRSGNYPINDLVLNT-PAVAAAVMDSFRQL 165

Query: 177 DVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +    +     ++ RE+E L  ++ G+T+ EIA  L IS  TV N+I+SI+RK A   R
Sbjct: 166 TMDTHTEHVYSPMSPREIEVLELVAAGQTNKEIAARLEISNQTVKNHISSILRKLAVNDR 225

Query: 234 SGAIAYAVRNNIV 246
           + A+ +A++   +
Sbjct: 226 TQAVVFALQRGWI 238


>gi|99080801|ref|YP_612955.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99037081|gb|ABF63693.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 214

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +S              +  T      M  L +             
Sbjct: 11  MRILLADDHDMVRDTISAYLASEGG----AQITATTDLPRAMKELED-----------NG 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++    +   +   +L                         
Sbjct: 56  PFDLVLLDYNMPGMNGLDGLQRALKANGGRGVAILSGSAPTRT--------AQDALDAGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +  + + E            ++         +L+
Sbjct: 108 IGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMRE------------EASAPEHPLLAQLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            REVE L+ +  G+++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 156 PREVEVLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213


>gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 189

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALELIESLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189


>gi|217970367|ref|YP_002355601.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507694|gb|ACK54705.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 220

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +  L  R   L  +                          +    
Sbjct: 3   LRILLADDHQMFRHALRALLARDPELEVVAEAASGEEVL---------------AIADAQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 +    F          A   
Sbjct: 48  PVDLVCMDIAMPGMDGIEATRRLLARH--------PALRVIGLSAFADRQFVTDLLAAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +      +  +        AA  A+  +     +     LT
Sbjct: 100 RGYITKGEAGDELLRAIRTVCEGRSYLCPEV-------AATVADALRDSPGVYAAAPRLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I+EG TS +I   L I+ +TV  +  ++MRK      +    YA+ + I
Sbjct: 153 ARERQVLQLIAEGLTSVQIGDRLHIAASTVEVHRRNLMRKLDLHNVAELTRYAIHSGI 210


>gi|113969495|ref|YP_733288.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113884179|gb|ABI38231.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 225

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 80/239 (33%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + +     ++ L   S  +      +       R+                 D
Sbjct: 18  IRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQT---------------D 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L++ +  ++      V+          F      +       
Sbjct: 63  AVDVLLSDIRMPVLDGLSLLKQLRAAQNSI--PVI------MLTTFDDSELFLNSLQAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N +      + ++   + ++   G +I    L ++            +        + L+
Sbjct: 115 NGFLLKDVSLDKLLEAIEIVAQGGHLIEPSVLEQMQ--------QSSATAQSGPTHYLLS 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L +++ G ++ EIA  + ++  TV N++++I+ K   + R+ A+   ++ +++
Sbjct: 167 EREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225


>gi|15420719|gb|AAK97431.1|AF382827_1 transcriptional activator GacA [Azotobacter vinelandii]
          Length = 214

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +           +   L               
Sbjct: 2   IRVLVVDDHDLVRAGITRMLADIDGLQVVGQGSSGEEALKKARDL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S  D           +   V    P          
Sbjct: 47  KPDVILMDVKMPGIGGLEATRKLQRSNPDI--------KVIAVTVCEEDPFPTRLMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   +  +F   R I      ++ L A         +D        L+
Sbjct: 99  AGYLTKGAALDEMVQAIRQVFAGHRYISPQIAQQLALKAFQPQQSGSPFD-------LLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+  +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIANCEKVQSISDKLCLSPKTVNTYRYRIFEKLSINSDVELALLAVRHGMV 210


>gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 189

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIELLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------VCKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|296160955|ref|ZP_06843767.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295888844|gb|EFG68650.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 216

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +       + H+   +     +   D +               AS   L+R  
Sbjct: 2   TRVLIADDHALVRDGLRHILKGASGFEVIGEADDS---------------ASTVALIRER 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +             L   +       +       
Sbjct: 47  PADVLVLDLSMPGRNGVELIKQIKEEKPT--------LRILVLTMHAEQQYAVRAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   +  +   G  +                ++             L+
Sbjct: 99  SGYLTKESASAELVAAVTKVAAGGVYVSLAMAERFAQSLNEPVDLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ G+T  EIAV L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 151 DREFDVLKRIAAGQTITEIAVELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKLV 209


>gi|295093014|emb|CBK82105.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Coprococcus sp. ART55/1]
          Length = 217

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+V+  +D+     +  +    D +                 + T   GA    L    
Sbjct: 1   MNVVIIDDDQLVALSLQTILEACDDIQV---------------SATGGSGADAIRLYEEY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    +    +  S  D           L    F      I   +   
Sbjct: 46  QPDVLLMDIRMENINGLEASETIMASHPD--------ARILLLTTFSDDEYIIKALSIGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ--ANMFKSYDVHWGKDFE 185
             Y     +   I   +  ++    +   + + ++  L  +    +         G ++E
Sbjct: 98  KGYILK-QNFESIAPAVKAVYNGQTVFGDEIVGKLPDLIGHMDTTSSDVQPSPFAGMEYE 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ +E+  +  +++G  + EIA  L +S  TV NYI+SI+ K   + R+    +  + 
Sbjct: 157 LSSKEMNIIRLVADGLNNKEIASSLYLSEGTVRNYISSILDKLQLRDRTQLACFYYKK 214


>gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 189

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189


>gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 200

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVVGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDISIMDIEMPIQSGLDVAEILKKEKSS--------CKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R I ++ ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLASAIRNVMKGKREISQELMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWM 200


>gi|291300805|ref|YP_003512083.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570025|gb|ADD42990.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 12/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           ++    +  +    G                LD  +      
Sbjct: 3   RVLVVDDEALIRTGFTHILNAPDDITVVAAVPGGQAVDATVQHRPDVVLLDIRMPDVDGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            ++R +          V+          F T              +     D   +   +
Sbjct: 63  TILRQLRGL---TRPPVVA-----MLTTFDTDEYVAAALRLGAAGFLLKDTDPEHLAHQV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   G ++       +        N       H  +   LT RE E L  I+EG ++ 
Sbjct: 115 RALMSDGAVLSAKVTRSVVDGYLQGENR----GQHTTRVSRLTRREREVLVLIAEGMSNS 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  + +S  TV +++++I+ K     R  A   A R  I+
Sbjct: 171 DIAARMFLSVGTVKDHVSAILTKLGINNRVQAALLAERAGIL 212


>gi|302554590|ref|ZP_07306932.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472208|gb|EFL35301.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 217

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   GA      R        LD  +     
Sbjct: 6   RVLLADDHTLVRRGVRLILDGEPDLTVVAEAGDGAEAVAKARETPVDLAVLDVAMPRMTG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     L   ++              + Y   +     +   
Sbjct: 66  LQAAREL--------SRRLPGLHILILTMYDNEEYFFEALRAGASGYVLKSVADRDLVEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     I       +            +      +    T RE E L  ++EG TS
Sbjct: 118 CRAAVRDEPFIYPGAERAL---VRSYLERLHAGGGLPERPI--TEREEEILKLVAEGHTS 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI  +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 173 KEIGELLFISAKTVERHRANLLQKLGMRDRLELTRYAIRAGLI 215


>gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
 gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301]
          Length = 260

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 72/231 (31%), Gaps = 26/231 (11%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  H L        +       D  V    P +     +      
Sbjct: 21  QSDTLALLTRIRDEIGCRHILHTYRGRMGDCSKTSSSDLTVVMTVPANWAARYSTKNYFV 80

Query: 98  YYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCSLT-FDVARIRIGLMLLFPKGR 152
              + Q       +    +   L E+      + +         +  I I +     KG 
Sbjct: 81  VDPIFQEDAPYFKDDVSGIVRNLQEDADQCPAVADMLQDAEKHGLGNIFIAVSARGQKGA 140

Query: 153 I--------ILRDRLWE---------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +        I  D   E         +  L+    +              LT REV+CL 
Sbjct: 141 VGCSLFSFEISPDEDREQFVAKLRPRLLSLSGIIHSALCGCKDVATVSSLLTPREVDCLR 200

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 201 WAANGKTDGEIAEILNIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 251


>gi|163751601|ref|ZP_02158822.1| response regulator [Shewanella benthica KT99]
 gi|161328513|gb|EDP99667.1| response regulator [Shewanella benthica KT99]
          Length = 214

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRIIEDERGIKVVGEAGD---------------GETAVQWSRSN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 47  EADVILMDMNMPGIGGLEATRKILRYQS--------HAKIIVLTIQTEDPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L      + F S D    +   L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVAHGQRYLSPEIAQQMAL------SQFSSSDESPFQS--LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+   EIA  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITNGEKVSEIAAQLNLSPKTVNSYRYRLFAKLGINGDVELTRLAIRYKMI 209


>gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh
           114]
 gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 248

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 15/185 (8%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPP 123
           IVS  +P   V     SE  +   + Q  + L  P   +                     
Sbjct: 56  IVSDGYPEGWVCEYLQSELFRVDPIPQLASILSRPFRWSEAPKLMRLSPEGERYMQTLAQ 115

Query: 124 AGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
           +G+ +      +        + L    +   +  D ++E+   A      +        +
Sbjct: 116 SGLGDGVAMQVYGPNMRNAYVGLGFGKQDPDLTADEIFELQCAAQIAHIRYCELTEFRQR 175

Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             E L+ REVE L WI+ GK++  IA ILGISR+TV+     I  K     R+ A    +
Sbjct: 176 VAESLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGL 235

Query: 242 RNNIV 246
            + +V
Sbjct: 236 GSGLV 240


>gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 189

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189


>gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 189

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|148271887|ref|YP_001221448.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829817|emb|CAN00738.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 68/243 (27%), Gaps = 23/243 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     +    +   +  +  +            +  L               
Sbjct: 2   IRVVLVDDQSIVRAGFRVVLETAGGIEVVGEAAGGREAVELVRRLA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRPTELFCPVFHTLPENITPP 123
                 +D  + +    +  R +  ++ D            P  L    F          
Sbjct: 48  -PDVVVMDVRMPAGDGIEATRAITGADADASDRRPGDDRPGPAVLVATTFDLDEYVFGAL 106

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +     +       +  L      +       +      +    ++        
Sbjct: 107 EAGARGFVLKDAEPEEFIQAMRALAEGRAALDGVTTRRV----MAEFTRRRAASAVHPGT 162

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + +  + +G ++DEI   L I  +TV +++  IM K  T+ R   + +  R+
Sbjct: 163 EVLTPREQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRS 222

Query: 244 NIV 246
            ++
Sbjct: 223 GLL 225


>gi|113866184|ref|YP_724673.1| response regulator [Ralstonia eutropha H16]
 gi|113524960|emb|CAJ91305.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 210

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E   + +    +    +              ++                  
Sbjct: 2   IRILIADDHEIVRAGLRQFLSEEPDIQVTGEAGSGDQVMAQLRDA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D+++ +   +       L        P        I       
Sbjct: 47  EFDVLVLDISMPDRNGIDVLKLIRQRK-----PELPVLILSTYP---EDQYAINLIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +       +                       L+
Sbjct: 99  SGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGGLDKPTEQPVHQM--------LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +S G++   IA  L +S  TV+ Y + I+ K   KT +    YA++N +V
Sbjct: 151 EREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLV 209


>gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 264

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 76/243 (31%), Gaps = 24/243 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + + V +VL  +D      ++        +     L+           L         ++
Sbjct: 46  QTKPVRVVLVDDDPFVRRVIAQELLGDLRI----QLEGQAGSLREGRRLLMQHEFDVLMV 101

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                      D  +     F+L+                    +        P+ +   
Sbjct: 102 -----------DIRLGDGSGFELIEEAKKHRS--------AAEIIVISAIEDEPQVLHAF 142

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +             ++ +   G  I       + +   +Q +          K 
Sbjct: 143 ELGASGFLVKNAWFQSYAQAVLQVVNGGAAITPRLARRLLVHLDHQRSNQSPVRPPETKA 202

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  ++ G  ++EIA+ L IS  TVN ++ +I RK    TR+ A+++A   
Sbjct: 203 A-LSAREREVLRLVATGYVTEEIALQLTISAQTVNAHVKNIYRKLHAHTRAQAVSFASHR 261

Query: 244 NIV 246
            ++
Sbjct: 262 GLL 264


>gi|256790252|ref|ZP_05528683.1| LuxR family two-component response regulator [Streptomyces lividans
           TK24]
 gi|289774125|ref|ZP_06533503.1| LuxR family two-component system response regulator [Streptomyces
           lividans TK24]
 gi|289704324|gb|EFD71753.1| LuxR family two-component system response regulator [Streptomyces
           lividans TK24]
          Length = 233

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V + L  + E     V  L      +  +          +R+ AL             
Sbjct: 12  SPVRVFLLDDHEVVRRGVHDLLDDEPDITVVGEAATVEQALVRVPAL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       + R +     D           L    F      +     
Sbjct: 59  --RPDVAVLDVRLPDGDGVTVCRELRSQMPDLAC--------LMLTSFDDEEALLDSIMA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y       + +   +  +     ++      ++                       
Sbjct: 109 GAAGYVLKQIQGSDLVSAVRTVARGQSLLDASATTKLMARLRGGGQQPAEEPEMLP---G 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A + 
Sbjct: 166 LTDREREILELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223


>gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 222

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   GA    + R        LD  +     
Sbjct: 11  RILLADDHALVRRGVRLILDREPDLEVVAEAGDGAEAIAMARTHEVDLAVLDIAMPRFTG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A         V      L   +               + Y   +     +   
Sbjct: 71  LQAARELAA--------VRPGVRILMLTMHDNEQYLFQALKAGASGYVLKSVADRDLVAA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     +    +    L+  Y     +  D     +  LT RE E L  ++EG +S
Sbjct: 123 CRAAMRDEPFLYPGAVT--ALIRNYL---DRVRDGEEAPEQLLTPREEEVLKLVAEGHSS 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L IS  TV  +  +++ K   + R     YA+R  +V
Sbjct: 178 KEIAELLFISVKTVQRHRENLLHKLGLRDRLDLTRYAIRAGLV 220


>gi|294141034|ref|YP_003557012.1| LuxR family transcriptional regulator [Shewanella violacea DSS12]
 gi|293327503|dbj|BAJ02234.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12]
          Length = 214

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 18/219 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   ++    +  +     G + +            +D  +     F
Sbjct: 11  ILVVDDHSLIFDGLRSCLAPYSELELVGFVEDGLAVYEQCLKLKPDLVFMDLKLPGMSGF 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++R +     +           +                   N Y       + +   +
Sbjct: 71  DVIRQLRQRWPEM--------MIIMLTATVEEKSAREALDVGANGYVLKNSPKSTLLAAI 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I    L E  + A              G    LT RE + L  I EG+ + 
Sbjct: 123 KSVCKGKTFIDSS-LDEQQVEAL--------IGAVDGDMPMLTPREQQVLKLICEGRRNR 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +IA  L I   TV  +  ++MRK      +  I +A R 
Sbjct: 174 DIAEDLVIGLKTVETHRMNLMRKLNAHNVAELIHWAQRL 212


>gi|163839729|ref|YP_001624134.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953205|gb|ABY22720.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 209

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+V+  +     S +     +   ++ +                          L+   
Sbjct: 2   INVVVVDDHAIFRSGLRADLDQD--VSVLAEAATVDE---------------AVALISTH 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +           +                 L   V     + ++      
Sbjct: 45  HPEVVLLDVHLPGGNGGGGREVIERCGN-------PEVRFLALSVSDAAEDVVSVIRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A I   +        +           LA +  + F        +   L+
Sbjct: 98  RGYVTKAASGAEISAAVRTAASGDAVFSPR-------LAGFVLDAFGGAVPVDDELDRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  I+ G +  E A  L IS  TV  ++++++RK    +R     +A    ++
Sbjct: 151 AREREVMRLIARGYSYKETAKELFISVKTVETHVSAVLRKLQLSSRHELTRWAANRRLL 209


>gi|311745099|ref|ZP_07718884.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
 gi|126577613|gb|EAZ81833.1| DNA-binding response regulator DegU [Algoriphagus sp. PR1]
          Length = 216

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 13/178 (7%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      + V  +   +  +          +   VF              N
Sbjct: 50  IDLILMDIEMPKMNGIEAVE-LVSKKYPQI-------KTIMLTVFDNDEYIFKAVQAGAN 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   +  G+      G  +      +   L     N  +  +     +  LT 
Sbjct: 102 GYFLKEVDPTTLFKGIKETLEGGAAMTPSVALKTLKLLRNPPNFEEPKE-----EITLTK 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE L   S+G   ++I   L IS  TV  +I +I  K    ++  A+  AV+N I+
Sbjct: 157 REVEILEQTSKGLNYNQIGENLFISPKTVRKHIENIYHKLQVHSKLEAVQKAVKNRII 214


>gi|294053956|ref|YP_003547614.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613289|gb|ADE53444.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 218

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 66/246 (26%), Gaps = 39/246 (15%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N     V + +  ++      +S        L  +     T    +++  L         
Sbjct: 5   NVMESPVRVFVVDDNALLRLGLSETVNMEPGLELIGTASNTDDALVQIREL--------- 55

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       +D  +      D  R +                 +   VF +  +   
Sbjct: 56  ------KPDVITMDYQMPGGNGVDCTRQIVSE--------FPNAKVILLSVFDSEEDIWN 101

Query: 122 PPAGMDNRYCSLTFD-VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                   Y +     +  +   +  +   G         ++                  
Sbjct: 102 AVQAGVKGYLTKKAGEIEDVMEAIHEVARGGTYFPSGLAQKL---------------ERR 146

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  ++ G ++ EI   L +S   V  +I ++  K     R+ A+  A
Sbjct: 147 RSQKGLTDREMEVLKLLASGLSNKEIGSELDLSVAMVKLHIINLREKLDAVDRTQAVVQA 206

Query: 241 VRNNIV 246
            +  I+
Sbjct: 207 FKRGIL 212


>gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 189

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|86751547|ref|YP_488043.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86574575|gb|ABD09132.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 60/241 (24%), Gaps = 27/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ I L  +     S +  L      L  +   +       R   L             
Sbjct: 12  SRLRIFLADDHPIVLSGMKMLVAEDPELELVGEANDGPKALRRAIEL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      D+      ++         +   L   V             
Sbjct: 59  --RPDVAVFDLSMPGMNGIDVTEKYLEAQ--------PKARVLVLSVHEDGAYLRRLLKM 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +  G+  +   G  +              Q +     D       E
Sbjct: 109 GVGGYILKRSATDELIRGIHAVAAGGLYLDPAIAGRAIGRGVQQVS----IDSETSPISE 164

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L   S G ++  I+  L +   +V  Y A  M K     R   I +A+    
Sbjct: 165 LSTRELEVLRLASVGHSNKVISAKLQVGSKSVETYKARAMDKLGFTNRVELIRFALSMGW 224

Query: 246 V 246
           +
Sbjct: 225 L 225


>gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 63/229 (27%), Gaps = 21/229 (9%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF----------LLVRWDLFQEQKLDSI 77
              +   R++  D           +    G                          +D  
Sbjct: 5   PAGERAPRVLIADDQTLIRTGFRLILTARGIEVVGEAADGAEAVAAACELRPDVVLMDIR 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    +  R +                 L    F       T  +   + +       
Sbjct: 65  MPTMDGLEATRRILRR--------TPDCRVLMLTTFDLDHYVYTALSVGASGFLLKDVTP 116

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L+     ++       +       A+              LT RE+E    +
Sbjct: 117 EHLAAAVRLVDTGDALLAPSITRRL---VERFASPSAPAPAQHADLAALTPRELEVPGLL 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ E+AV L +S  TV +++A I  K A + R+ A+  A    +V
Sbjct: 174 GRGLSNAELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGLV 222


>gi|229522252|ref|ZP_04411668.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
 gi|229340237|gb|EEO05243.1| transcriptional regulatory protein UhpA [Vibrio cholerae TM
           11079-80]
          Length = 208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +      A     +         +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFHA-----LTQSEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVKG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|227549492|ref|ZP_03979541.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227078435|gb|EEI16398.1| possible transcriptional regulator [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 62/232 (26%), Gaps = 15/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R       P     L  ++     +             G                L
Sbjct: 15  DRPIRVLVADDQPMMITALKTILNTQDDIEVVTTAGN-----GREAIEAAERWRIDVAVL 69

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  + +            +    L    F +              +    
Sbjct: 70  DIRMPHLNGIEAAQIIRQRR--------ETTKVLMLTTFDSEDLVRRALEIGVQGFMLKD 121

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +     ++       +  +  ++ +              LT RE+E L
Sbjct: 122 SGPEALIDAIRRIHQGASVLSPGITEFV--INGFRDSCVAESTTTAPPVEPLTPRELEVL 179

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++  +T+ EIA  L I   TV  Y++ ++ K   + R G   +A  + IV
Sbjct: 180 ERVALAETNAEIAAHLHIGAATVKTYVSRLIAKLGVRDRVGLAVWAHTSGIV 231


>gi|271963970|ref|YP_003338166.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507145|gb|ACZ85423.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 218

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  ++    + V  +      +  +                    G +   LVR  
Sbjct: 2   IRVVLADDESVVRAGVRMILAADPGIEVVAEAGD---------------GRTLVELVREH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +        +     L    F          A   
Sbjct: 47  RPDVALVDIRMPDLDGLAATTEIRRT--------VPGTAVLIMTTFGRDSYIARALADGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T D     + +      G  +       +  +     +          +   LT
Sbjct: 99  AGFLLKTGDPREFLLAVRAAAEGGAYLSPRVAARV--IGELAGDRLARGSAARERIDVLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  +  G ++ EIA  L +   +V  Y+++I+ +   + R  A   A    +
Sbjct: 157 RREREVLGLVGAGLSNAEIARRLHLVEGSVKTYVSTILGRLGVRNRVQAAVLAHEAGL 214


>gi|320008532|gb|ADW03382.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 221

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 16/227 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G +   L R        +D  
Sbjct: 6   IRVLVAEDQSAVRAGLVLILRSAPDIEVVGEA-----ADGEAAVRLTRELRPDLVLMDVQ 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F              + +     + 
Sbjct: 61  MPRLDGVSATRQIVAERLAD---------VLVLTTFDLDEYVFGALRAGASGFLLKNTEA 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +  +  + +               LT RE E L  +
Sbjct: 112 GDLIAAVRTVARGEGLIAPAVTRRL--IEEFASASPAHEPAAPEALGTLTRREREVLGCL 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G ++ EIA  L ++  TV  +++ ++ K   ++R+ A   A +  
Sbjct: 170 GLGLSNMEIAGRLSMAEATVKTHVSRLLGKLGLRSRAQAAVLAQQLG 216


>gi|227494727|ref|ZP_03925043.1| possible response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831727|gb|EEH64110.1| possible response regulator [Actinomyces coleocanis DSM 15436]
          Length = 221

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 73/249 (29%), Gaps = 32/249 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVS-HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           M+   Q + +V+  +     + +   L    + +  +       S    +  L       
Sbjct: 2   MSQPDQPLTLVIIDDHPMVRAGIRFELEKHPEAVQVIGEAVDVTSAISLVQEL------- 54

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                     Q   LD  +            A            +   L   V  +  + 
Sbjct: 55  --------QPQVALLDVHMPGGNGGGGAEVAARCRNM-------QTKFLALSVSDSAEDV 99

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYD 177
           +         Y + T     +   ++ +                 LA +  + F      
Sbjct: 100 VAVIRAGARGYVTKTISTEELVQSILRVGAGDAAFSPR-------LAGFVLDAFGTAQVS 152

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   L+ RE E +  I+ G T  E A  L IS  TV  ++++++RK     R+   
Sbjct: 153 ETDEELDLLSAREQEVMRLIARGYTYKETAAELFISIKTVETHVSAVLRKLQLSNRNELT 212

Query: 238 AYAVRNNIV 246
            +A   N+V
Sbjct: 213 HWATVRNLV 221


>gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
 gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production
           enhancerprotein) [Bacillus pumilus ATCC 7061]
          Length = 216

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 64/218 (29%), Gaps = 15/218 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     +VR        +D  +     
Sbjct: 2   RVVIADDHHIVRKGLVFFLQTQPDVEIVGEASNGEEALEIVRQTRPDIVLMDLSMPVMNG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + M L         +     +    +      I         Y        ++   
Sbjct: 62  IEATKQMTLE--------MPDTRIVILTSYADKDYVIPAIQAGAKAYQLKDVAPEKLLTT 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ +      +       +                      ELT RE + L  I++GK++
Sbjct: 114 MIDVQKGTYQLDGHITNFLVQHLTEPKEQKWELMK------ELTNRERDVLFEIAKGKSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            EIA  L IS  TV  +++ ++ K     R+ A  YAV
Sbjct: 168 KEIASSLFISEKTVKTHVSHVLSKLELADRTQAALYAV 205


>gi|261821119|ref|YP_003259225.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|84620008|gb|ABC59302.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
 gi|261605132|gb|ACX87618.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 73/229 (31%), Gaps = 30/229 (13%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +   +     ++ S++P + V     +       V+  
Sbjct: 15  IKTYLSRKLKQYGDLKYAYMIMNK--KNPSQVVIISNYPQEWVNTYKENNYQHIDPVILT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P                   N++    + N Y  +  D       L ++F +  
Sbjct: 73  AINKVSPFSWEDNIVINSKLKFSKIFNLSKEYDIVNGYTFVLHDNNNNLAALSIMFEENA 132

Query: 153 IILRDRLWE-----IGLLAAYQANMF----------KSYDVHWGKDFELTGREVECLTWI 197
           +   + + E     + +L                          K+   + RE E L W 
Sbjct: 133 LTDMENIVEKNKDKLQMLLIVIHEKITTLYKEITQTPQSKKQSDKEI-FSQRENEILYWA 191

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA+IL I  +TV  +I ++++K        AI   V   ++
Sbjct: 192 SMGKTYPEIALILDIKISTVKFHIGNVVKKLGVLNAKHAIRLGVELQLI 240


>gi|881487|gb|AAA68948.1| GacA [Pseudomonas aeruginosa PAO1]
          Length = 213

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    + L  +   D                G     L R  
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIEGLQVVGQAD---------------CGEDCLKLAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S+ D    V+              P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVVVTVC--------EEDPFPTRLMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   +  +F   R I      ++ L +         +D        L+
Sbjct: 99  -GYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDS-------LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+       I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMV 209


>gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 209

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 65/241 (26%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +   + +++  +       V  L      L  +   +                      
Sbjct: 1   MQQPALTLMIVDDHPLMRRGVRQLLALDPRLDVIAEANNGTEALAEARRQ---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      D ++ +                 L   V     +    
Sbjct: 51  -----EPDIILLDLNMKGMSGLDTLKALRHEGIS--------SRILVLTVSDARSDIFAM 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   ++      ++                A+   +       
Sbjct: 98  VDAGADGYLLKDSEPEILLGHILQASRGEKVFSEG-----------VASYLDNRQHSADP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  ++ G ++ EIA IL IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 LRLLTDRECDVLQEVARGLSNKEIAAILHISEETVKVHIRNLLRKLDVRSRVAATVMWLE 206

Query: 243 N 243
           +
Sbjct: 207 S 207


>gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 189

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLASAIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QELMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|259418943|ref|ZP_05742860.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
 gi|259345165|gb|EEW57019.1| two component transcriptional regulator, LuxR family [Silicibacter
           sp. TrichCH4B]
          Length = 214

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +S   +          +  T      M  L +             
Sbjct: 11  MRILLADDHDMVRDTISAYLSSEGG----AQITATTDLPRAMKELED-----------NG 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D ++    +   +   +L                         
Sbjct: 56  PFDLVLLDYNMPGMNGLDGLQRALKANGGRGVAILSGSAPTRT--------AQDALDAGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +  + + E            ++         +L+
Sbjct: 108 IGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMRE------------EASAPAHPLLAQLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            REVE L+ +  G+++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 156 PREVEVLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213


>gi|254381629|ref|ZP_04996993.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
 gi|194340538|gb|EDX21504.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
          Length = 234

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 62/236 (26%), Gaps = 26/236 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + L  + E     +  L      +  +           R  AL              
Sbjct: 12  PVRVFLLDDHEVVRRGLHDLLDAEPDIEVVGEASTAEQALARGPAL-------------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       + R +     D           L    F      +      
Sbjct: 58  -RPDVAVLDIRLPDGDGITVCRELRSRMPDLAC--------LMLTSFDDEDALLDAIMAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       + +   +  +     ++       +        +          +   L
Sbjct: 109 AAGYVLKQIKGSDLVSAVRTVATGQSMLDPATTARL---MHSLRDPEAVKAPDDDRLAAL 165

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + RE   L  I EG T+ +IA  L +S  TV N+I+ ++ K   + R  A   A +
Sbjct: 166 SERERSVLELIGEGLTNAQIAKRLYLSEKTVKNHISRLLDKLGVERRVQAAVIAAQ 221


>gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf0-1]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 75/222 (33%), Gaps = 15/222 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALS 93
           +      V+    +       G   F+L       E  ++ I  V  DW  D +  +   
Sbjct: 16  IEAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWVEGDWFGDGI-AVDAQ 74

Query: 94  EKDKYYNVLQRPTELFCPVFHT--------LPENITPPAG-MDNRYCSLTFDVARIRIGL 144
              +   V +   +     F +        L   +  P+G   +      F    +   +
Sbjct: 75  TYVQRCPVTRHLLDARESFFWSKVQEQSGELYRLVRVPSGPGVHGLQIPVFGPQGLEGAM 134

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKT 202
            L   +           +G+LA+      +            +L+ RE E L W++ G+ 
Sbjct: 135 SL-GGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTREREVLAWVAAGRR 193

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             +IA  LG+S  TV N++ S  R     T + AI  A+R  
Sbjct: 194 QADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKG 235


>gi|306835684|ref|ZP_07468690.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304568402|gb|EFM43961.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 219

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 23/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +     + +S +    + +  +                    GA    L 
Sbjct: 1   MPKIRVMLADDQAMLVAALSTILKTQEDIEVVATAAS---------------GADAVSLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +         + +                 +    F+         A
Sbjct: 46  LRHRIDVAILDIRMPGMDGIAAAQAILSR--------TPDCRIIMLTTFNEEDLVSQSIA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +     D   +   +  +     ++       +           +          
Sbjct: 98  AGAHGFLLKDADPEVLVQAVRDVAKGESVLASQVTGPVLEGYRKALTHSQLSPHERQGLS 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE+E LT I+ G T+ EIA  + I+  TV  +++++M K A + R   +  A +  
Sbjct: 158 LVTRREMEVLTLIARGATNGEIAGHMSIADTTVKTHVSALMSKLAARDRVALVLLAHKAG 217

Query: 245 I 245
           I
Sbjct: 218 I 218


>gi|302867758|ref|YP_003836395.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302570617|gb|ADL46819.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 222

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     +          +D  +     
Sbjct: 4   RVVVADDQELIRAGLRTVLDARPDLSVVGEAADGVEAVAVATRTRPDVVLMDVRMPRRDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  +              +    F              + +       A +   
Sbjct: 64  IAATRDLVAAGNP--------ARVVMLTTFDLDEHVYAALRAGASAFLLKDTRPADLAEA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +       A+   +          LT RE E LT  +   ++
Sbjct: 116 VRVVARGEALLAPTVTRRL---LDRYADRLPAPAPAGDVLAVLTAREREVLTLTARALSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++++I+ K   + R  A+  A    +V
Sbjct: 173 AEIAARLHLSTATVKTHVSAILTKLGLRDRIQAVVLAYDTGLV 215


>gi|271961795|ref|YP_003335991.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504970|gb|ACZ83248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 12/218 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D       L   V     M  + E        L      + +++D +V       +  
Sbjct: 3   VDDQELLRNGLTMVVRSQPDMEVVAEA----ADGLAALKALESRRVDVVVMDIRMPRMDG 58

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A  E  +       P  L    F      +       + +         I   +  + 
Sbjct: 59  VIATREIQRLD---GPPKVLVLTTFDLDEHALAALRAGASGFMLKDAPGEEIIAAIRHVH 115

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               II       +      +A+              LT RE E    ++ G ++ EI V
Sbjct: 116 RGDSIIAPATTRRLIGRLVAKAD-----TDPDAVLKVLTEREREVFLSLARGASNAEIGV 170

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV  ++  I+ K   + R  A+  A  + +V
Sbjct: 171 ELFLSETTVKTHVGRILTKLGLRDRVQAVVLAYESGVV 208


>gi|291298136|ref|YP_003509414.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567356|gb|ADD40321.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 216

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +     S +  +      +  +      V        +               
Sbjct: 3   IRVTVADDQAMVRSGLRFILEDQPDITVVGEAADGVEAIELARRV--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       + R +A         V+     L    F           G  
Sbjct: 48  RPDVCVVDIRMPRLDGIAVTRALAGPG------VVDPLRVLIVTTFDLDEYVYGALRGGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +        +I          +     +           D  L+
Sbjct: 102 VGFVLKDAGPVLLVEAVRAANAGNALISPS-------ITLRLLSHLAPGAGEPEPDHRLS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I+ G+T+ E+A  L IS +TV ++++SI  K   + R    A+A  + +V
Sbjct: 155 DRELEVVRAIAIGRTNQEVAAELFISLSTVKSHVSSIQAKLGARNRVAIAAWAWEHRVV 213


>gi|171057589|ref|YP_001789938.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775034|gb|ACB33173.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 68/222 (30%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D +     L   +  T   + + E   G     ++R        +D  +     
Sbjct: 14  HILIVDDHVIVREGLQRILEATGAGWVVAEASSGFQALEVMRHQPIDLAIVDLSMPGMNG 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL++ +             R   L   +       +       N Y +     A +   
Sbjct: 74  LDLIKRIRTE--------FPRVRVLVLSMHAEEQYAMRAFKAGANGYVTKDGASAELVNA 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +       + L                    +L+ RE+E L  I  G+  
Sbjct: 126 VRKVATGGAYVTASLAERVVLQLN--------GATTAPGHAQLSDRELEVLRRIVAGERI 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L +S  TV+ + + I  K    T +  I Y + + +
Sbjct: 178 TDIAEALHLSVKTVSTHKSRIQEKLQLPTMAALIRYGMAHGL 219


>gi|148548821|ref|YP_001268923.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148512879|gb|ABQ79739.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 219

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L         +   D       ++  L                
Sbjct: 4   RLLLVDDHSLIRAGVRALVCDIPGYDVVGEADDGNQLLDQVRTLA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +  S              L   +       +       +
Sbjct: 49  PDIILLDISMRSTSGLDALTQLRASGST--------CKVLILSMHTDPDLIMRALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +    R +          +        K      G+   LT 
Sbjct: 101 GYLLKDTSATELEQALGAVRHGERYLSPAIA---HTVINQALRHTKQGKQSAGERHNLTS 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIHDVAGLVLFAVREKII 215


>gi|326330233|ref|ZP_08196544.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
 gi|325952046|gb|EGD44075.1| response regulator, two-component system [Nocardioidaceae bacterium
           Broad-1]
          Length = 218

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +            +      L          +D  
Sbjct: 3   IRVVVADDQDLVRTGLVMILGAQPDLEVVGEAADGLAAL-----DLAARLRPDVLLVDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++ R +A  +      V+          F      +         +       
Sbjct: 58  MPGLDGVEVTRRLAGPDVTDPMAVV------VITTFDLDEYVLGALRAGARGFLLKDAGP 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +I  +    +  LA +                 LT RE + L  +
Sbjct: 112 ELLVQAIHAAADGDALIAPNVTRRL--LATFADQAPAVPVQPVDP---LTEREEQVLALV 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + G+T+ EI+  L +S +TV  ++AS+M K  T+ R     +A 
Sbjct: 167 ARGRTNAEISTELFVSLSTVKTHVASLMTKLGTRNRVEIAMWAY 210


>gi|50955085|ref|YP_062373.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951567|gb|AAT89268.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 22/239 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  +     + V  L +  + L                       GA    LVR 
Sbjct: 2   PIRVALVDDQALFRAGVRMLVSSQEDLEFAGEAAN---------------GAEGVELVRQ 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +      +       P  +    F           G 
Sbjct: 47  TNPDVVLMDIRMPVMDGIAATGEIVGHAAREGRT---PPRVVVLTTFDLDEAAARAIRGG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +     +   +   +  +     +I       +      + +  ++      +   L
Sbjct: 104 ASGFVLKDAEPEFLLAAIRTVHAGNAVIAAGATQNL----FERFSTGRAAQPVPAEFASL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E     + G ++ EIA    +S  TV  +I+ I+ K   + R   + YA  + +
Sbjct: 160 TSREREIFALAARGLSNAEIAGSEFLSEATVKTHISRILGKLGLRDRVQMVVYAFEHGL 218


>gi|260887377|ref|ZP_05898640.1| DNA-binding response regulator UhpA [Selenomonas sputigena ATCC
           35185]
 gi|330840036|ref|YP_004414616.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
 gi|260862886|gb|EEX77386.1| DNA-binding response regulator UhpA [Selenomonas sputigena ATCC
           35185]
 gi|329747800|gb|AEC01157.1| two component transcriptional regulator, LuxR family [Selenomonas
           sputigena ATCC 35185]
          Length = 216

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 71/246 (28%), Gaps = 33/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  + + + I+L  +       +S L +  +  + +           +            
Sbjct: 1   MENKKEPLRILLADDHRVLRKGLSLLLSSEEDFSVVAEASDGEEALEK------------ 48

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      + +R +   +             L   +        
Sbjct: 49  ---AAKTPVDIALLDLSMPHMGGLECLRRLKAMQ--------PAVRVLILTMHSERQYVC 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N Y       A +   L  +   GR +       +   A  +     +     
Sbjct: 98  ECLRAGANGYLCKDTLDAELFRALRTVAAGGRYLGEREAELLIDGALEEPEEPAA----- 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E L  I  G +   IA  L +S  TV+ Y   +++K      S  + YA
Sbjct: 153 -----LSTREREVLELIVHGYSLSTIADKLYLSIKTVSTYKTRLLQKLDCTQNSELVDYA 207

Query: 241 VRNNIV 246
           +R+NI+
Sbjct: 208 LRHNIL 213


>gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 189

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 63/211 (29%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIELLKPDVSIMDIEMPIQSGLDVAEMLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT+ EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTASEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|170743785|ref|YP_001772440.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168198059|gb|ACA20006.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 220

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + L  +     + +  L   +  L  +                    G+    ++
Sbjct: 1   MAEIRVTLADDHPIVVTGIKALLASAPDLHLVGEAAT---------------GSQALEVI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R +A          ++        V  +         
Sbjct: 46  CATEPDVAIIDMSLPDLNGLELARRLAE-----RCPQVKLL---ALTVHESRAYVQPMLQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +   G  +      +    A    +             
Sbjct: 98  AGARGYLLKRSAADELLRAIRAVAAGGLYLDPAVADKALPGAPAARSAEPGG-------A 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L   ++G ++ EIA+ L +S  TV  Y A    K   +TR+  + +     
Sbjct: 151 DLSPRETEVLRHTAQGFSNKEIALRLDVSVKTVETYKARAAEKLHLRTRADIVRFGAARG 210

Query: 245 IV 246
            +
Sbjct: 211 WL 212


>gi|83955493|ref|ZP_00964124.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83840137|gb|EAP79312.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 220

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 23/220 (10%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFL------LVRWDLFQEQKLDSIVSSDWPFDL 86
           L +++ +D        + ++ E     + +          +   E   D I+      ++
Sbjct: 11  LIKVMIVDDHPMVAEGIQSILESYDDINVVGCLPNGRAAIESVVELDPDVILMDLNMPEI 70

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A     +     +                 +  +     Y         I++ +  
Sbjct: 71  GGLSATEILLERQPDTRIVILSM---HDNPEYISSALSHGAMGYILKDVPTDEIKLAIDT 127

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R +       +              +        LT RE   L  +++GK++ E+
Sbjct: 128 VMRGERYLCTGAQGSL--------------EPKDAARESLTEREQTILLQLAQGKSNKEV 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 174 AQTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVL 213


>gi|94314084|ref|YP_587293.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357936|gb|ABF12024.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 231

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 73/232 (31%), Gaps = 12/232 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS------ 76
           +  L     L A  + ++     + R+  L + +G +   LV      E +         
Sbjct: 3   LRTLAADLTLPAPALLVEDDPLVSRRLENLLQQLGYAPDALVLAASLAEARARVTDQPVA 62

Query: 77  -IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLT 134
             +      D      ++E       L            +  + I          Y    
Sbjct: 63  LALVDLGLPDGSGIDLIAELRAADPGLGILVISA----WSTQDAILAALRAGATGYVVKE 118

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   + + L  +   G  I       I        +   +          L+ RE + L
Sbjct: 119 RDDLEVALALRSVLRGGAPIDPFIARRIIEELHPGPSESANAQTPEPSTERLSPREHQIL 178

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G  + EIA  L +SR TV  +I  I RK A  +R+ AI  A    ++
Sbjct: 179 RLVADGLGNREIAERLFLSRYTVECHIKHIYRKLAVSSRTRAINAARSRGLL 230


>gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 217

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   +++  + +     V  +    +                 +  L            
Sbjct: 1   METTKVLIADDHQVMRRGVRAVVELLEGWEVCGEASTGREAVEMVEKL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   +   +V      +L    A  +  K     +           T         
Sbjct: 49  --------QPQIVVMDVTMPELNGLEATRQIKKIAPATEILMFTGL---ETEELIRQVFE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T    ++   L  L             ++G +   +    K  D     D 
Sbjct: 98  AGARSYILKTDGREQLEAALTALAAHKPYF----TTQVGEILFAKFLHGKPKDEEQTVDG 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +  ++EG ++ E+A  LGIS  TV  + A+IM+K   K+ S  + YA+RN+
Sbjct: 154 RLTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSFSDLVRYAIRNH 213

Query: 245 IV 246
           I+
Sbjct: 214 II 215


>gi|297156465|gb|ADI06177.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 255

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +D    + +  +   +     ++                   GA    LV
Sbjct: 36  LTPIRLLVVDDDPLVRAGLRLMLGGASSGIEIVGEASD--------------GAEVAALV 81

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +         +   E             +    F+     +    
Sbjct: 82  DRHSPDVVLMDIRMPTVDGLTATEQLRQREPAPE--------VVVLTTFNADEHVLRALR 133

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A +   +  +     ++      ++    A      +        D 
Sbjct: 134 AGAAGFVLKDTPPADLVAAVRRVAAGEPVLSPTVTQQLIEHVAGSGRDARQERARALLD- 192

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE E    + EGK++ EI+  L +S  TV  +++ I+ K     R      A    
Sbjct: 193 QLNDREREVAVAVGEGKSNAEISAGLFMSVATVKTHVSRILTKLDLNNRVQIALLAHDAG 252

Query: 245 IV 246
           ++
Sbjct: 253 LL 254


>gi|254385617|ref|ZP_05000941.1| response regulator [Streptomyces sp. Mg1]
 gi|194344486|gb|EDX25452.1| response regulator [Streptomyces sp. Mg1]
          Length = 210

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 22/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + +   G    L           LD  + +    
Sbjct: 9   VLLADDHPVVREGLSAMLELDEGIRVVGQAGSGEEAVLQAGRLRPDIVLLDLRMGAMDGV 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +             R   +    +    + +         Y         +   +
Sbjct: 69  AATGHILRES--------PRSKVVIVTTYEDDADILRAVEAGAAGYLLKGSSREELVNAV 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++      ++             +     +   L+ RE E L  + +G T+ 
Sbjct: 121 KAAARGETVLTPSLAPKL-------------FRARVVEAPVLSERECEVLQLVRQGLTNA 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I   L IS  TV  ++    +K +   R+ A+  A+   ++
Sbjct: 168 DIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGLL 209


>gi|91978252|ref|YP_570911.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91684708|gb|ABE41010.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + L  +     S +  L      +  +       +   R   L              
Sbjct: 13  RLRVFLADDHPVVLSGMKALVAGDPAIEIVGEASDGPNALRRAIEL-------------- 58

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++ R                   L   V              
Sbjct: 59  -KPDVAVLDLSMPGLNGIEVARKFLA--------ACPECRVLVLTVHEDGAYLRQLLDLG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
            + Y         +  G+  +   G  +        IG  A + ++             E
Sbjct: 110 VSGYVLKRSATEELIRGIHAVGSGGIYLDPAIAGRAIGRAAPHASD-----SEEHSAVSE 164

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L   + G ++  IA  L I   +V  Y A  M K     R   + +A+    
Sbjct: 165 LSTREIEVLRLAAVGHSNKTIAAKLQIGAKSVETYKARGMAKLGFHNRVEVVRFALSMGW 224

Query: 246 V 246
           +
Sbjct: 225 L 225


>gi|320095650|ref|ZP_08027309.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977423|gb|EFW09107.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 216

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 17/225 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMR-MYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWP 83
           L    D       +   +      +  L E                    LD  +     
Sbjct: 5   LVIIDDHHMVRAGVRAELEAMGADLRILGEASDVEGAIAACHELRPDVALLDVHLPG--- 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                    +E       ++    L   V  +  + ++        Y + +   + +   
Sbjct: 62  ---GNGGGGAEVASACQDVEGLRFLALSVSDSAEDVVSVIRAGARGYVTKSISPSDLVEA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGK 201
           +  +                 LA +  + F          +   L+ RE E +  I+ G 
Sbjct: 119 INRVAGGDAAFSPR-------LAGFVLDAFGTGEVSTTDSELDLLSAREQEVMRLIARGY 171

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E+A  L IS  TV  ++++++RK     R     +A++ +IV
Sbjct: 172 TYKEVAHDLFISIKTVETHVSAVLRKLQLSNRHELTRWAMQRHIV 216


>gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           TA208]
 gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens
           LL3]
          Length = 199

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 28/218 (12%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  L   ++    M  + +   G      V         +D  +      +  
Sbjct: 7   AEDQQMLLGALGSLLNLEEDMTVVGKGTSGQDAIDFVEKHAPDICLMDIEMPGVSGLEAA 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +  S+                  F              + Y         +   +  +
Sbjct: 67  EKLKDSDVKII----------ILTTFARSGYFQRALKAGVSGYMLKDSPSEELVSAIRSV 116

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R+   + + +I                 +G++  LT RE   L  +++GK + EIA
Sbjct: 117 MKGRRVYAPELMEDI-----------------YGEENPLTEREKAVLELVADGKNTKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L I   TV NY++ I+ K   K R  AI  +     
Sbjct: 160 NALSIKSGTVRNYVSMILDKLEVKNRIEAITRSKEKGW 197


>gi|157144856|ref|YP_001452175.1| transcriptional regulator NarP [Citrobacter koseri ATCC BAA-895]
 gi|157082061|gb|ABV11739.1| hypothetical protein CKO_00584 [Citrobacter koseri ATCC BAA-895]
          Length = 215

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       +  L         +                    GAS   L
Sbjct: 3   EATPFQVLIVDDHPLMRRGIRQLLELDTAFNVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ASRLDLDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDVYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++            + Y       +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGANGGKVFSDRV-------SEYLREREL-FGAEEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|148652475|ref|YP_001279568.1| two component LuxR family transcriptional regulator [Psychrobacter
           sp. PRwf-1]
 gi|148571559|gb|ABQ93618.1| two component transcriptional regulator, LuxR family [Psychrobacter
           sp. PRwf-1]
          Length = 219

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 64/221 (28%), Gaps = 17/221 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +S       + +   G      +  +      LD  +    
Sbjct: 12  AKILLVDDHPMLRRGMADLLSLEPDFQVVADVSSGEEALSYLAQNQVDLVILDQNMPGLS 71

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D    +             +   L   V  +  +         N Y        ++ +
Sbjct: 72  GLDTAEQIREQGH--------QAKVLMFTVSDSGDDIHNALKLGVNGYLLKDMQPEQVAL 123

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        ++       +                       LT RE++ +  I++G +
Sbjct: 124 DIRKALRGELVVSSRLAAVLA--------QALRTPNLDDIVSNLTSRELQVVKMIAKGHS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +  I   LGIS +TV  ++  I+ KT  +TR     +AV N
Sbjct: 176 NKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAVNN 216


>gi|238920173|ref|YP_002933688.1| response regulator UvrY [Edwardsiella ictaluri 93-146]
 gi|238869742|gb|ACR69453.1| response regulator UvrY [Edwardsiella ictaluri 93-146]
          Length = 218

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E   + +  +      +  +    C                         +
Sbjct: 2   ISVLLVDDHELVRAGIRRILEDIKGIKVVGEAQCGEDAVKWCR---------------NN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   + D           +   +    P          
Sbjct: 47  CADIILMDMNMPGIGGLEATRKILRVKSDI--------KVIMLTIHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  ++   R I  D   ++ L         +           L+
Sbjct: 99  FGYLSKGAAPQEMISAIRAVYAGQRYIASDIAQQMAL--------SQLTPQGDSPFGSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I++G    EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 151 ERELQIMLMITKGSKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 208


>gi|17547031|ref|NP_520433.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17429332|emb|CAD16019.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 13/228 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            S V  L    D       L   +S       + E   G     L           D  +
Sbjct: 1   MSTVHRLLIAEDHHLLRCGLRSMLSALGEYDVVGEAKDGREACQLAISLAPDLVLTDLSM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D+V  +           L +   +   V+ +            + Y        
Sbjct: 61  PGMNGIDMVATIKRR--------LPQIRVVVLTVYKSEEYVREALRVGVDGYVLKDASFE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +    R +  D    +                       LT RE   L  ++
Sbjct: 113 ELVAALRAVMQGKRHLSADVYGNVVKSFVNGHEALAPKSTWE----TLTARERSVLQLVA 168

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG+T+ ++ + L +S  T+  Y A +M K      +G +  A+   ++
Sbjct: 169 EGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAAIGLGLI 216


>gi|85705256|ref|ZP_01036355.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85670129|gb|EAQ24991.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 215

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 36/244 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              + + IV+  +       +  +    D +  +  L    +   R+ AL          
Sbjct: 1   MSPKPIRIVIVDDHPMVAEGIQSILESYDDIEILASLCNGQAIIDRVEAL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +           +     D           L   +  +     + 
Sbjct: 51  -----DPDVILLDLNMPGLGGLTTAEIILEKRPD--------TRILILTMHDSPEYISSA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +     Y         I+  +  +    R +       +                   +
Sbjct: 98  LSHGAAGYVLKDVPTDEIKRAIDAVMTGQRYLCTGAKGSLE-------------PYENPE 144

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ 
Sbjct: 145 REQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYALE 204

Query: 243 NNIV 246
           + ++
Sbjct: 205 HGVL 208


>gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 207

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 65/239 (27%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     S + HL      +  +            +  +               
Sbjct: 2   IRVVLVEDHLLVRSGLRHLLEARGPVRVVGEAGSCREALELLEKV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L + +                 L   +   L           
Sbjct: 47  QADVAILDVSLPDGTGIALCQRLRER--------FPELRLLALSMHEDLEYVRGFLQAGG 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   ++ +    R +       + +                 ++  L+
Sbjct: 99  QGYVSKAAVDQELLDAVLAVARGERYLNPALAMRLAM----------ELVRESAEEAPLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G +  E+A  LGIS  TV  Y    M K    +RS  + YA R   +
Sbjct: 149 PREEEVLRLLAQGLSHKEVAEKLGISEKTVATYRERGMEKLGLASRSELLRYAARKGWI 207


>gi|74318482|ref|YP_316222.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057977|gb|AAZ98417.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 221

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 74/222 (33%), Gaps = 25/222 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG-----------ASHFLLVRWDLFQEQKLDSIVSSD 81
           L R+I +D    +   +  L E  G               +L++        LD  +   
Sbjct: 3   LTRIILVDDHTLFRKGLAELLEQSGEIEVTAFTGNPDEVAMLLKAHRPDVLILDLNMPGT 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               L++ +  +              L   +  T  +         N Y   + +   + 
Sbjct: 63  DGITLMQQLRNAGF--------ALPILILTLSETEDDLARALRAGANGYLLKSMEPDEVV 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++       ++      ++  L   +     S          LT RE E L+ +S G+
Sbjct: 115 DAILRAQRGETVVAPAMTAKLVKLYDQKGQDAGSLLDA------LTPREREILSHLSRGE 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++  IA  L IS +TV  ++  I+ K    +R  A  +AV +
Sbjct: 169 SNKAIARTLDISHDTVKLHVRHILAKLNLSSRVEAAVFAVEH 210


>gi|222082720|ref|YP_002542085.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727399|gb|ACM30488.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 217

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  +IV+  + +   S ++ +   S+ L  +      +        L            
Sbjct: 1   MKTASIVIADDHDLARSGIAAVLATSENLDIVGQAKNGLEAVELCDRL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D I+       L    A +E  K     +        +  ++        
Sbjct: 49  --------RPDLILLDIRMTPLDGLGAAAEIRKIAPDTKIVM---LTMHESIDYLSAAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   + ++         D +                         
Sbjct: 98  VGASGYLLKDVSRESLLRTIDIVLDGQAFFDADLM-------CKMLARIDRESPAEMVIE 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++ G+T+  IA  L IS  TV  ++  I+ K     R+ A   A++  
Sbjct: 151 RLTNREREILCSLTTGETNKGIARALSISPGTVKVHVERILSKLGVNDRTQAAVLAIQAG 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 81/223 (36%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           + L    D    ++ +   + +      LT   G     ++          D ++     
Sbjct: 22  TTLLLIDDDPNLILLVRDYLEFRGY-DMLTAANGVEGLQILEETTPDLIICDVMMPEMDG 80

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  ++ +  + +  +  V+    +          + I       + Y    F+   +   
Sbjct: 81  YTFIQNVRQNSQISWIPVIFLSAKGQ------TCDRIEGLNQGADVYLVKPFEPEELVAQ 134

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +              L +   + ++      S         ELT  E + ++++++G ++
Sbjct: 135 V-----------ESSLNQARRILSHSGATTSSMAFQVPSHVELTPTETKVVSFVAQGLSN 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S+ T+ +++++++ KT+   R+    +A+ + +V
Sbjct: 184 REIAEKLNVSQRTIESHVSNMLNKTSLNNRTELARWAMDSRLV 226


>gi|300088612|ref|YP_003759134.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528345|gb|ADJ26813.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 227

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 70/241 (29%), Gaps = 25/241 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  + +     +  +      +  +   D                G     L 
Sbjct: 11  MEKIRVLIIDDHDVVREGLRTVLQNEADMVIVGEADS---------------GRQGVTLT 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F   + +                 +    + +         
Sbjct: 56  EELKPDVILLDLKMPGMDGFATAKEIIEH--------FPSAKIIMLTGYESDLYAAEATE 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         +   + ++   G +   +    +    +    +  S     G + 
Sbjct: 108 TGVHGFMGKNTPRKLLLNSIRVVNDGGTVF--NYTDMLHADLSDNPPIPGSTGSSSGPEI 165

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE + L  I +G T+ EIA+ LG++  TV   I  ++ K     R+ A   A +  
Sbjct: 166 LLKSREKQVLDLIVKGLTNKEIAMKLGLAEVTVKKIIGHLLHKLNAANRTQAALAAKQLG 225

Query: 245 I 245
           +
Sbjct: 226 L 226


>gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 189

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIELLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 189

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189


>gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
 gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium
           jeikeium K411]
 gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium
           ATCC 43734]
          Length = 216

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 28/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q+ +++  +     + +  +   +  +  +  +                      ++  
Sbjct: 3   DQLRVLICDDHPVVRAGIEAMLRGAGDVEIVASVGDPDR---------------AVVICA 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +      +D         +      +            P  L    + T  + +   + 
Sbjct: 48  EEQPDVVLMDLRFGEGPGSESAESGGVRATRAIRKRKPAPQVLILTNYSTDSDVLGAISA 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +  G+        ++ ++ + ++                       
Sbjct: 108 GAVGYLLKDCAPDELAEGIRQAARGQTVMNKNIMGKL-------------RGRLANPFES 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L   S+GK++  IA  L ++  TV +++A +  K   K R+ A+A A    I
Sbjct: 155 LTNREQEVLVLASQGKSNRAIAKDLVLTEATVKSHMAHVFSKLNVKNRTAAVAVARERGI 214

Query: 246 V 246
           +
Sbjct: 215 I 215


>gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 200

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    D +  +            + +L               
Sbjct: 2   IRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 47  KPDISIMDIEMPIQSGLDVAEALKKEKS--------LCKVMILTTFARPGYFERAMKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R + +D ++ +                 W +   L+
Sbjct: 99  HGYLLKDSPSEDLAAAIRNVMKGKREVSQDLMFGL-----------------WQEQNPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EGKT++EIA +L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 142 DREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWM 200


>gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 32/237 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E     +  L      +  +                          +   
Sbjct: 2   PIQVLLVDDHELVRRGLRDLLGDEPDIEVVAEASSVEE---------------ALAVAMH 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   +D  +       L R +                 L    F      +      
Sbjct: 47  VEPEVAVVDVRLGDGDGITLCRELRSKPNPPAC--------LMLTAFDDEEAMVGAIMAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +     ++       +     +             +   L
Sbjct: 99  AAGYLLKQVRGQDVVNAVREVAAGRSLLDPVSTARVLDKMRH---------PPTDELATL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE + L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A+ VR 
Sbjct: 150 TERERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIVRR 206


>gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 224

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 14/215 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPFD 85
              D       L   +     +  + +  G     L R          LD  +       
Sbjct: 3   LLDDHEVVRRGLHDLLDAEPDIEVVGDA-GTVAQALTRGPALRPDVAILDVRLPDGNGVA 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           + R +  +  +           L    F      +         Y       + +   + 
Sbjct: 62  VCRELRSAMPELAC--------LMLTSFDDDDALLDAIMAGAAGYVLKQIKGSDLVSAVR 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +    +                  L+ RE E LT I EG T+ E
Sbjct: 114 TVASGQSMLDPATTTRL---MSTLRGESAEPQPRDESLAGLSTREREILTLIGEGMTNRE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           I   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 171 IGKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIA 205


>gi|225175234|ref|ZP_03729230.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169410|gb|EEG78208.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 215

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 16/204 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L   +        + E   G     + + +      +D  +     
Sbjct: 3   RVLIVDDHAVVRMGLKSLLELQDNFTVVGEAESGEEAIEIAKQEKPDVVVMDIRMPDMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +     D           +    +              + Y     D  ++   
Sbjct: 63  IEACREIRGVSSDI--------KVIMLTSYADDEAVYASIMAGASGYVLKQMDNDKLIES 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++          +        K        + +LT  E + L  I+EGKT+
Sbjct: 115 VERVAQGESLLDPS-------ITGKVMGRMKDIATEKENEAKLTETERKILMLIAEGKTN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRK 227
            +IA  + ++  TV NY+++I  K
Sbjct: 168 QQIADAIFLAEKTVRNYVSNIFSK 191


>gi|219850507|ref|YP_002464940.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219544766|gb|ACL26504.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 213

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 64/225 (28%), Gaps = 16/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSD 81
           +S +    D       L   +     M  + E     +              LD  +++ 
Sbjct: 1   MSGILLVDDHAVLRAGLRLLLESQPDMVVVGEAEDSRTAITQATTLQPDLILLDLSLTNS 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                ++ +             +   L   +           A   + Y       A + 
Sbjct: 61  SGLAAIQSLRA--------AAPQARILVLTMHDDEGYVRQALAAGAHGYVLKRAADAELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +      I       +                       L+ RE E L  ++ G 
Sbjct: 113 AAIRAVLRGELYIHPALTRRL-------LEDILPQPQPTNPWESLSEREREVLVLVARGY 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L +S  TV  Y    M K   ++R+  + +A+ +N++
Sbjct: 166 TAAEIAGQLNLSPKTVETYRTRGMEKLGLRSRAALVQFALDHNLL 210


>gi|21224130|ref|NP_629909.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|256784790|ref|ZP_05523221.1| two-component regulator [Streptomyces lividans TK24]
 gi|2995293|emb|CAA18322.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
          Length = 219

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   GA      R        LD  +     
Sbjct: 8   RVLLADDHTLVRRGVRLILDGEPDLTVVAEAGDGAEAVAAARATEIDLAVLDVAMPRMTG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     L   ++                Y   +     +   
Sbjct: 68  LQAAREL--------SRRLPELRILILTMYDNEQYFFEALKAGACGYVLKSVADRDLVEA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     I       +        +  +       +    T RE E L  ++EG TS
Sbjct: 120 CRAAVRDEPFIYPGAERAL---VRSYLDRVQGGGGLPERPI--TEREEEILKLVAEGHTS 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI  +L IS  TV  + A++++K   + R     YA+R  ++
Sbjct: 175 KEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAIRAGLI 217


>gi|299066090|emb|CBJ37271.1| putative two-component response regulator, transcription regulator,
           LuxR [Ralstonia solanacearum CMR15]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 13/228 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            S V  L    D       L   +S       + E   G     L           D  +
Sbjct: 1   MSTVHRLLIAEDHHLLRCGLRSMLSALGEYDVVGEAKDGREACQLAISLAPDLVLTDLSM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D+V  +           L +   +   V+              + Y        
Sbjct: 61  PGMNGIDMVATIKRR--------LPQIRVVVLTVYKAEEYVREALRVGVDGYVLKDASFD 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +    R +  D    +                       LT RE   L  ++
Sbjct: 113 ELVAALRAVMQGKRHLSADVYGNVVKSFVNGHEALAPKSTWE----TLTARERSVLQLVA 168

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG+T+ ++ + L +S  T+  Y A +M K      +G +  A+   ++
Sbjct: 169 EGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVGNVTGLVLAAIGLGLI 216


>gi|212636693|ref|YP_002313218.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212558177|gb|ACJ30631.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 209

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 66/220 (30%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              +   P     + ++I  D   +      +     G      V  +      LD  + 
Sbjct: 7   VLVIDDHPLLRRGICQLITSDSDFTLFGEAGS-----GLDALSAVAENEPDIVLLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  +                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNALRQEGVT--------SRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       RII  +    +        +   S          LT RE+E L  ++E
Sbjct: 114 LLDMLKNAMLGHRIISDNVKEYL--------SELNSSVNEQEWIENLTPRELEILQHLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+++  +A  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GQSNRVVAEQLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|62179158|ref|YP_215575.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126791|gb|AAX64494.1| fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA
           family) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713620|gb|EFZ05191.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 241

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 80/242 (33%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D +                +    +
Sbjct: 32  MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVILKTDDS---------------RTAIKYL 76

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +     F L++ +          + +    LF               
Sbjct: 77  RTYPVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 128

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I        +  ++       D 
Sbjct: 129 AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFI--------SNTRTPKGGHH-DM 179

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    +    I YA  + 
Sbjct: 180 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHE 239

Query: 245 IV 246
           ++
Sbjct: 240 LL 241


>gi|325001931|ref|ZP_08123043.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 217

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E     ++ L    D +  +         T+R+ AL               
Sbjct: 3   ISVFLLDDHEIVRRGLAQLLELEDDIEVVGEAATASQATVRLPAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       + R +          V   P  L    +              
Sbjct: 48  RPDVAILDVRLPDGDGVSVCRDV-------RSAVTPPPACLMLTSYADDEALFGAIMAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
           + Y         +   +  +   G ++                   +  D     D    
Sbjct: 101 SGYLLKQVAGVDLVGAVRTVAAGGSLLDPKATAA-------VLERLRRGDTATQSDPRYE 153

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ +E   L  I++G T+ +I   L ++  TV NY++SI+ K     R+ A  YAV  
Sbjct: 154 SLSPQEQRILELIADGLTNRQIGGELHLAEKTVKNYVSSILHKLGYARRTEAAVYAVER 212


>gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4]
 gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4]
          Length = 215

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 63/221 (28%), Gaps = 10/221 (4%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D       L    +    M  + E   G     +V   +     +D  +      D 
Sbjct: 2   LVDDQPIIRQGLTYIFNSQSDMEVVGEADNGKDAVKIVLRCIPDIVLMDVQMPQATGIDA 61

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +  S        L     +    F                Y         +  G+  
Sbjct: 62  TRNIVQS--------LPDTKIILLTTFDVQDYVFDGIRAGAAGYLLKDTQTKELLDGVRS 113

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDE 205
           +     +       +         +   +         E LT RE+E L  I+ GK + E
Sbjct: 114 IQRGATLYNSMTAKQALAKIINSRDNISTNQPKASSFIEPLTDREIEILQLIAYGKKNKE 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA IL IS   V  ++ +I +K     R+ A+   +   +V
Sbjct: 174 IANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICMQLV 214


>gi|134100027|ref|YP_001105688.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912650|emb|CAM02763.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 20/227 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         +A ++  +  +        + E +      LV         LD  +
Sbjct: 4   RVFVVDDHEVIRRGIAALVNAESDLELIGEASTVAESL-----ALVPQANPDVAVLDVRL 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L R +                 L    F      +         +        
Sbjct: 59  PDGNGVELCRELQSRRPGLRC--------LMLTSFDDHDALMDAIIAGAAGFVLKGVVSE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +        ++   +   +           +          ELT RE E L  I 
Sbjct: 111 ELVNAIRTAGSGESLLSAKKTEAM-------LAWLRREQEQADPLRELTAREREVLELIG 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG T+ EI+  + ++  TV NY++ ++ K A + RS A   A    +
Sbjct: 164 EGLTNREISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLATELRL 210


>gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
 gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Paenibacillus polymyxa E681]
          Length = 199

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 60/222 (27%), Gaps = 28/222 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   +     M  + +   G     LV+        +D  +     
Sbjct: 3   RIVIAEDQRMLLGALASLLDLEEDMKVVGKASNGEEAIELVKLHQPDICIMDIEMPIKSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +                 L    F              + Y         +   
Sbjct: 63  LDAAEELKALN----------CKVLILTTFARPGYFERAIKAGTHGYLLKDSPSEELASS 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    RI   + +                 D  + +   LT RE   L  I++GK +
Sbjct: 113 IRSIMAGRRIYAPELV-----------------DDAYAEVNPLTEREKTVLALIADGKNT 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++  TV NYI+ I+ K     R  AI        
Sbjct: 156 KEIAGELYLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197


>gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 189

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 63/211 (29%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D    +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDAAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  P--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QELMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     V
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWV 189


>gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 173

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPE--------------NITPPAGMDNRYCSLTF 135
                      V++R      P  + +                ++    GM+        
Sbjct: 2   YDSHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVH 61

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECL 194
           D A  R  + +   +   +L   + +I  +A    +           K    T  E++CL
Sbjct: 62  DAAGGRGAMSISGSRNFTML--EMAKILFIATLIYDRLSQLTLNEKHKPIAFTSSELDCL 119

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G+ S EIA +L +S N VNN+I S+++K    TR+ A+  A+R NI+
Sbjct: 120 RLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 171


>gi|300788195|ref|YP_003768486.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797709|gb|ADJ48084.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 16/227 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     L  ++     +    +        GA     V     +   +D  + 
Sbjct: 4   VLVVDDEPMVCAHLRTILGSADDIEVVAQA-----ADGAEAVEAVVRHRPRVVLMDLRMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  +  +A          +          F      I         +   +     
Sbjct: 59  GVDGLTAIARIAAL---PDPPAVV-----ALTTFDADTYVIRALRAGAAGFLVKSTPPED 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + +      ++       +  L++         +    +   LT RE + L  +  
Sbjct: 111 LIGLVRVAADGHTVLSPSAARRLVALSSDSRER---GEDARRRTAGLTERERDVLACLGS 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ +IA  L ++  TV +Y++ ++ K     R+ A   A    +V
Sbjct: 168 GLSNADIAARLHLAEATVKSYVSRMLVKLDCANRTQAGLLAHEAGLV 214


>gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +      +T   G     ++  D+      D ++     
Sbjct: 10  KRLLLIDDDPNLILLVKDYLEFRGY-DVITAENGREALDVLAQDIPDMIICDVMMPEMDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                  AL E  +    +     LF        + +       + Y    F+   +   
Sbjct: 69  ------YALVEYVRQDPSMNWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQ 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +     +   +                      ++    + ELT  E++ + +++ G  +
Sbjct: 123 VESSLRQASRLTTR---------PQTPGGEPPSNIQVPANVELTPTELKVVQFVARGLAN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S+ T+ +++++++ KT    R+    +A+ +
Sbjct: 174 REIAQELNVSQRTIESHVSNMLGKTGLHNRTELARWAIES 213


>gi|115358524|ref|YP_775662.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|170703717|ref|ZP_02894440.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171323018|ref|ZP_02911678.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|172063277|ref|YP_001810928.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|115283812|gb|ABI89328.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
 gi|170131372|gb|EDS99976.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171091598|gb|EDT37191.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171995794|gb|ACB66712.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 215

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++                   G S   LVR    Q   LD  + 
Sbjct: 4   VLIADDHTLVRDGLRHILQNATGFEVAGEA-----CDGPSTIALVRSTPAQVLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +   +             L   +       +       + Y +     A 
Sbjct: 59  GRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +      +        A               L+ RE +    I+ 
Sbjct: 111 LVGAVTKVASGGVYVSLAMAEQFAQSLNEPAETL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 163 GQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKLL 209


>gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera
           radiovictrix DSM 17093]
 gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera
           radiovictrix DSM 17093]
          Length = 211

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q  + L  +     S +  L         +   D   +   R+  L            
Sbjct: 1   MAQPRLFLVDDHAVVRSGIRLLLEAHGGALVVGEADSGEAALERVPELA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +  R +           L     +   +            
Sbjct: 50  ----PDIVLLDLTLPGMNGIETARSLKAR--------LPSVRLIALSMHEDPEYVRGFLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y   +    ++   +  +           L E+              +    +  
Sbjct: 98  AGGNGYVPKSALETQLLDAIRAVSRGEYYAPARLLAELAR---------DLSESGPYRHV 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE   L  I++G T  EIA  LGIS  TV  Y      K   KTR+  + YA+++ 
Sbjct: 149 RLTERERSVLARIAQGCTYKEIAEELGISDKTVATYRERAAEKLGLKTRAELVRYALQHG 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 207

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 61/212 (28%), Gaps = 9/212 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD--LVRCMALS 93
           M+ +D    W   +       G             +++   +  +    D  L       
Sbjct: 1   MMVVDDHPIWRDAVARDLADDGFDVVATADGVASAKRRAAVVQPAVVLMDMRLADGDGAQ 60

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
              +   V      L         + +         Y   +     +   +        +
Sbjct: 61  ATAEVLAVSPSSRVLVLSASDERDDVLEAVKAGATGYLVKSASKQELGDAVRATAQGRAV 120

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                      LA      F+  +        LT RE E L  +++G T+ +IA  L +S
Sbjct: 121 FTPG-------LAGLVLGEFRRIERDSPAGPTLTERETEILRHVAKGLTAKQIASRLSLS 173

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV N++ +  RK     R     YA+ + +
Sbjct: 174 HRTVENHVQATFRKLQIGNRVELARYAIEHGL 205


>gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 67/216 (31%), Gaps = 19/216 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS---SDWPFDLVRCMA 91
           R+  L+     T     +     +  F    + +  +Q  +  +    S++P +      
Sbjct: 8   RLPKLEDEDQITSVFEMVINETYSLGFQFCSFKMSTQQLANQKIIFEKSNYPNEWSHLYK 67

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIG 143
            ++      V+        P                +    G+   +         +   
Sbjct: 68  QAKFADVDPVVAHCQRSVLPFVWKETAFQGTPHLWTLAQSCGVHLGWTQPLHGPRGVFSM 127

Query: 144 LMLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           L L   K   I  + L+E       +            + +        LT RE+E L W
Sbjct: 128 LTLSRSKRE-ISPEELYEKAGNALWLCHAMHTVVAHKYANEPDAVPCNNLTPRELEVLRW 186

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            + GKT+ EIA IL +S  TV  +  S MRK     
Sbjct: 187 SALGKTAGEIAKILCLSERTVGFHNCSSMRKLGVNN 222


>gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 206

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 30/233 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  + E     +  +   +  +  +           R+ A                  
Sbjct: 1   MFLLDDHEIVRRGIREMLEDTGDIQVVGEASTAAEALRRLPAAA---------------P 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD+ +      D+ R +  +  +    +L          +       +        
Sbjct: 46  NVAVLDARLEDGSGIDVCRDIRSAHPEIGCLIL--------TSYDDDDALFSAIMAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +  +     ++                   +       K   L  R
Sbjct: 98  YLLKQIKGTDLIGAIRTIAAGRSLLDPAVTQR-------VLTRLREGPTQDPKLAALGTR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E E L  ++EG T+ +IA  + +S  TV NY++SI+ K    +R+ A  +A R
Sbjct: 151 EREILHLVAEGLTNRQIASRIHLSEKTVKNYVSSILVKLELTSRTQAAVFAAR 203


>gi|261404049|ref|YP_003240290.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261280512|gb|ACX62483.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 203

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ L    D +  +           ++                  
Sbjct: 3   IKVLIAEDQRMLRGALASLLDFEDDIDVIGQAGDGEEALSQI---------------AIH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++   +                 +    F              
Sbjct: 48  QPDVCLLDIEMPVRSGLEVAEEVKRRGY--------ASRVIILTTFARPGYFERAVQAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        R+   +  +    R +  + ++  G L+   AN              LT
Sbjct: 100 QGYLLKDEPSERLAEAIRRVMGGRREVSPELVF--GTLSGAGAN-------------PLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G +S++IA  L +S  TV NY++ I+ K   K R  AI+ A     +
Sbjct: 145 EREREVLRLAADGNSSNDIAAKLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 203


>gi|187920901|ref|YP_001889933.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719339|gb|ACD20562.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 210

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 74/223 (33%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++ T  +    E   G+     +R   F    LD  +     
Sbjct: 3   DVLIADDHAVVRGGLKQIIATTTDIVVAAEAAQGSEVLDRLRARRFDLVLLDMTMPGISG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL+R +   +             L   + +               Y +   D   +   
Sbjct: 63  VDLIRRVRAEQ--------PPLPILVLSIHNEAQVVSRALRAGATGYVTKDSDPDVLLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L   GR I    +  +          F+++         L+ RE + L  ++ G++ 
Sbjct: 115 IRKLAGGGRFIDPKLVDAMV---------FETHSGDAPPHEVLSDREFQVLQMLAAGQSI 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA    +S  T++ +   +M+K      +  I YAVR+ +V
Sbjct: 166 NEIAESCSLSAKTISTHKMRLMQKLGLNNNAELIRYAVRHGLV 208


>gi|94499701|ref|ZP_01306238.1| two-component system regulatory protein [Oceanobacter sp. RED65]
 gi|94428455|gb|EAT13428.1| two-component system regulatory protein [Oceanobacter sp. RED65]
          Length = 211

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 19/225 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +       D +  ++ L      T          G     +          LD  +   
Sbjct: 6   LIEDQKLVRDGIKTLLELKPGFEVT-----ACASDGQEGLEMAGQYAVDIILLDIRMPVM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++R +          V+          F                Y      +  + 
Sbjct: 61  NGVEVLRGLKERSWFT--PVI------ILTTFDDHELISQCTRLGAKGYLRKDVGLDELT 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G  +       I   A        S         EL+  E + L  ++ G 
Sbjct: 113 SAIKHVLKGGDWVRPAVTDRISRYAQAIPQESLSDK------IELSTSETQVLRLVAAGY 166

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++EIA  +  ++ TV N I+SI+ K   + R+ A+  A+   ++
Sbjct: 167 SNNEIASTVFKAQGTVRNQISSILEKLDVRDRTQAVMRAIELGLI 211


>gi|254509824|ref|ZP_05121891.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
 gi|221533535|gb|EEE36523.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
          Length = 215

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 36/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  +  L        +   L               
Sbjct: 6   IRVLIVDDHPMVAEGIQSLLESFDDIEVVGTLSNGQEAVDQATRL--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +           L     L   +  +     T  +   
Sbjct: 51  QPDVILMDLNMPGLSGLSATEIILER--------LPDTRILILSMHDSPEYISTALSHGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I+  +  +    + +       +                       LT
Sbjct: 103 RGYVLKDVPTEAIKQAIDAVMRGEQYLCTGASGSLEPKDGNAREA-------------LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE   L  +++GK++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 150 GREQTILLELAQGKSNKEVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 208


>gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56]
          Length = 241

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L R+            +  +      SH +L           + ++   +P + V+    
Sbjct: 11  LDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRSSGMADSNPLLMLTYPPEWVKQYRD 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTL-----------PENITPPAGMDNRYCSLTFDVARIR 141
            +      V++     F PV  +             +                      R
Sbjct: 71  RDYFSIDPVVRLGRRGFLPVEWSASKWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGER 130

Query: 142 IGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
               +         R    D + ++  LA +  +     S         +L+ RE++CL 
Sbjct: 131 SLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRVMVLSGMREIADFPQLSRRELQCLE 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G  + +I   L IS + V  Y+AS  RK    T S A+A A    ++
Sbjct: 191 MTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKATALELI 241


>gi|21242903|ref|NP_642485.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108399|gb|AAM37021.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 213

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 23/224 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   ++    M  + E   G                +D  +    
Sbjct: 8   TDVLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYTRLRPDVVLMDLQMPRVD 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +          V      +    +      +         Y   +     +  
Sbjct: 68  GVEAIQRIRQ--------VDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVD 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R               +              D  L+ RE E L  ++ G +
Sbjct: 120 TIRDVRRGQR--------------RHVPASVAENIAAHVLDDALSARETEVLNLVATGCS 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L IS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 166 NKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGIL 209


>gi|262280669|ref|ZP_06058452.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299771874|ref|YP_003733900.1| response regulator [Acinetobacter sp. DR1]
 gi|262257569|gb|EEY76304.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298701962|gb|ADI92527.1| response regulator [Acinetobacter sp. DR1]
          Length = 211

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     +VR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDHADVEVIGQAES---------------GEEAIAIVRQK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  +  D           +        P          
Sbjct: 47  HPQVVLLDVNMPGIGGVETTRRLLQTAPD--------TKVIAVSGLSEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPITEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K A  +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDVKLTHLAIRYGLI 209


>gi|290957842|ref|YP_003489024.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647368|emb|CBG70473.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 237

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 65/236 (27%), Gaps = 20/236 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQ 70
           +  + + R      +    D       L   +     +  + + V G       R     
Sbjct: 1   MPDQPQARPGPPLRVLVADDNPVVRAGLTALLDAHPDLEVVAQAVNGEEAVARARRHRPD 60

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +        +  +          V+                           Y
Sbjct: 61  VALLDVRMPGTDGLTALPELTAL-----CPVM------MLTYSTEPEVVAEALRRGAVGY 109

Query: 131 CSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLL---AAYQANMFKSYDVH----WGK 182
                F  A +   +  +      I       +G+    +    +              +
Sbjct: 110 LVHGEFTAAELIAAVRDMREGRATISATVSSSLGVSYEPSHESHDHSSQLQPFVKQFDRR 169

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            F L+ REVE +  I+ G  + +IA    IS  TV N+I  I  K  + TRS AIA
Sbjct: 170 SFGLSSREVEVMDLIASGMNNRQIAATCFISEKTVKNHINRIFAKLHSATRSEAIA 225


>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 227

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 15/229 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +  +     +T   G     +V          D I+     ++
Sbjct: 5   ILVVDDDLGTRLSISDYLELSGY-SVVTANDGQEALAMVDNYHPDLIVTDIIMPRMNGYE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +            +    +         E I       + Y    F++  +   + 
Sbjct: 64  LVRRVRQQ------PAFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIR 117

Query: 146 -LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWI 197
            LL     I    RL     L ++  +             +       LT RE E L  +
Sbjct: 118 NLLERSQIIQSEYRLSHKENLGSFVPSKEVEIPNSLSTHIQQSHLLASLTPREQEVLELL 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ ++   L +S  TV  Y++S++RKTAT  R+  + +A+++ +V
Sbjct: 178 THGFSNADMGHQLHLSPRTVEKYVSSLLRKTATSNRAELVRFAMKHGLV 226


>gi|113869645|ref|YP_728134.1| response regulator [Ralstonia eutropha H16]
 gi|113528421|emb|CAJ94766.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 224

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 56/219 (25%), Gaps = 14/219 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           + +    D       +   ++    +  + E       L         +  D +++    
Sbjct: 12  ARVLLIDDHALVRDGMRMHLALQPGLRVVGEADDGEAALAWLDRAGAAELPDLVITDIGM 71

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +      +     Y  L             L             Y         +   
Sbjct: 72  RGMGGIALAAALHDRYPELAVLIVSM---HDNLEYVRQAVRAGARGYVLKDAPADELMAA 128

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                                 G    LT RE + L  I  G  +
Sbjct: 129 IQSVLAGRVFYSARIARG-----------MAEQSPAAGPLDALTPRERDILRGIGRGLAN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EIA  LG+S  TV  +  ++ RK   + R+G + YAV 
Sbjct: 178 KEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVE 216


>gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 195

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 9/178 (5%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F    +D  +S     DL+  + L         +     +           I        
Sbjct: 27  FDVLLVDLSLSEGQGADLLELVQLR--------MPNVLSIAISSSEKDDIAIEAFEKGVV 78

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y             ++ +   G  I      +I L   ++ +  +       K  +LT 
Sbjct: 79  GYLLKNSWFGSYSQAVLEVANGGASISPIVAKKI-LPKIFKYSALEEAPFENKKLEKLTD 137

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I++GK + EI   + IS  TV+ ++ +I RK   +TR+ A+ YAV   I+
Sbjct: 138 REKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKGII 195


>gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 32/238 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E     +  L +    L  +                          +   
Sbjct: 2   PIQVLLVDDHELVRRGLRDLLSDEADLEVVAEAGSVEE---------------ALAVAMH 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +       L R +                 L    F      +      
Sbjct: 47  VEPDVAVVDVRLGDGDGITLCRELRSKPNPPAC--------LMLTAFDDEEAMVGAIMAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +  +     ++       +     +             +   L
Sbjct: 99  ASGYLLKQVRGQDVVNAVREVAAGRSLLDPVSTARVLDKLRH---------PPTDELAAL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE + L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A+  R  
Sbjct: 150 TDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIARRG 207


>gi|150377494|ref|YP_001314089.1| autoinducer-binding domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150032041|gb|ABR64156.1| Autoinducer-binding domain protein [Sinorhizobium medicae WSM419]
          Length = 320

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 64/226 (28%), Gaps = 22/226 (9%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
             +        + +     G   F  +     Q Q  D    + +P +       S    
Sbjct: 100 AANDERMIKSAVLSFANAHGFERFAYL-----QTQGDDVQTFNSYPEEWQDIYLGSRYSI 154

Query: 98  YYNVLQRPTELFCPVFHTLPENITP-------------PAGMDNRYCSLTFDVARIRIGL 144
              V+            T+ +                   G+ +            ++ L
Sbjct: 155 IDPVITEAKRRMNVFSWTVDDWPARGRSELRRFKDQAVAHGIRSGVTVPVEGSFGSKMML 214

Query: 145 MLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                + +     +   +     +L  +      +          L+ RE  CL W  +G
Sbjct: 215 TFASSERKADVSKLQDAQDAIQAVLVIHYRLKILAAVTIVSPKTMLSPREAMCLMWAMKG 274

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   E A I GI   TV +Y+ +  RK   ++    +A A  + +V
Sbjct: 275 KNGPETAKITGIKPRTVQHYLDNARRKLGAQSVPHLVAIARDHGLV 320


>gi|187930792|ref|YP_001901279.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|309780211|ref|ZP_07674962.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
 gi|187727682|gb|ACD28847.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|308920914|gb|EFP66560.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
          Length = 214

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 57/228 (25%), Gaps = 20/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDS 76
            R      L    D       +   +        + E   A   L   R        +D 
Sbjct: 3   MRPPTPVKLLLVDDHPLVRDGVRVRLEAVPHFEVVGEAGDADAALQAARTLSPDLALMDI 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       L    A                L   +   L             Y      
Sbjct: 63  GMRGMNGIALTEKFAEE--------FPEIAVLVLSMHDNLEYVRQVIRAGARGYVLKDAP 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + +   +  +                      A       V       LT RE + L  
Sbjct: 115 ASELVEAIDAVLAGRPFYSA-----------QLAMRMAEQAVMPTPVEALTPRERDILEG 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I++G  +  IA  LG+S  TV ++  ++ RK   + ++  + +AV   
Sbjct: 164 IAKGYANKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFAVELG 211


>gi|118594726|ref|ZP_01552073.1| regulatory protein, LuxR:Response regulator receiver
           [Methylophilales bacterium HTCC2181]
 gi|118440504|gb|EAV47131.1| regulatory protein, LuxR:Response regulator receiver
           [Methylophilales bacterium HTCC2181]
          Length = 212

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 65/242 (26%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +          L      +  +   D                G +     
Sbjct: 1   MSNMKVLLVDDHSVVRMGFKMLIESEKDMEIIAEADS---------------GENGIKAY 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +      + +  +   +        +    L                
Sbjct: 46  KEHTPDVTVMDITMPGIGGLEAIDRILAHD--------KNAKILVLSAHEDSVHPKRALN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +    + +      ++                      
Sbjct: 98  AGALGYLTKRSAAEELIKAIRTVSKGTKYLESTIAQQMA---------ITQLSGENNPVE 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E    +++G++++EIA  + +S  TV  ++ +I +K      +     A+R+ 
Sbjct: 149 VLSDREFEVFMALAKGRSTNEIAETICLSPRTVGTHLYNIKQKLNASNSAEIALIAIRSG 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|158318246|ref|YP_001510754.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113651|gb|ABW15848.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 215

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 68/228 (29%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L  +I  +  +  T          G +   LVR        LD  
Sbjct: 2   IRVVVADDQPLVRLGLKVLIETEDDLELTGEAED-----GQAALALVRRTRPDVVLLDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +           L     +    F              + +     + 
Sbjct: 57  MPVLDGLAALRAITA------DPALTDTRVVMVTTFELDEYVFEALRNGASGFVLKDTEP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++       +    A +     + D        LT RE E +  +
Sbjct: 111 ADLLRAIRVVAAGESLLSPTITRRVIETFARRPAAPAAVD-----LTSLTVREREVMGLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G ++DEIA  L IS  T   +++ +M K + + R+     A +  +
Sbjct: 166 GLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQLAVLANQAGL 213


>gi|326772918|ref|ZP_08232202.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
 gi|326637550|gb|EGE38452.1| two-component system response regulator TcsR7 [Actinomyces viscosus
           C505]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 78/248 (31%), Gaps = 29/248 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +D      ++ L +  + ++              +++               +
Sbjct: 2   IRIGIADDDPLVRRTLAQLLSTEEGISVAWTAQDGQEALDLIHS------------TETE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +       L + +                 +          +    A   
Sbjct: 50  PVQAVLLDVQMPRLDGLTLAKTLHEEN--------PELAIIILSTLIADSISNEAFAAGV 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKD--- 183
             + +   DV  +   +        ++           L    A+   +    + +    
Sbjct: 102 RGFVAKEDDVDALAGAIKQAVAGNIVLTPKSSAVLSERLQPASADRGSTPPPSFSRKEAS 161

Query: 184 -----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE+E L  ISE  T+ +IA  L +S  T+ +++++I+ K     R GA  
Sbjct: 162 PLPFGVTLSTRELEVLALISEALTNKQIANRLNLSEATIKSHVSAIIAKLGVPDRVGAAV 221

Query: 239 YAVRNNIV 246
           +A+++ +V
Sbjct: 222 FAMQHGLV 229


>gi|291518206|emb|CBK73427.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 210

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 27/235 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +DE  T  +  +    +    +   +                G     L     
Sbjct: 3   RILLIDDDELITMSLEMIINAEEGFEVIGKGNS---------------GREGVKLYDELQ 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  ++     +    +          ++     LF   F      +        
Sbjct: 48  PDLLLMDIRMADMNGLEAAEEILAK---HKDAII-----LFLTTFSDDEYIVKALKLGVR 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   +   L        +     + ++  L          +D    +  +++ 
Sbjct: 100 GYLLK-QDYKSLPAALHAAMDGQSVFGGAIVDKLPALMNSATEEDSGFDY---QSKDISE 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +E E +  ++EG ++ EIA  L +S  TV NY+++I+ K   + R+    + ++N
Sbjct: 156 KEYEVIQLVAEGFSNKEIAQKLFLSEGTVRNYLSTILEKLELRDRTQLAIFYLKN 210


>gi|300775044|ref|ZP_07084907.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300506859|gb|EFK37994.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 210

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 16/195 (8%)

Query: 46  TMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              M  + ++  G    + +         +D  +      +++  +     D        
Sbjct: 25  QKDMKVIAQFFDGNDAMMNLPGISPDVVMMDIQLQDMLGIEIIEKLRKEMPDTQ------ 78

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              + C  F    +           Y      + +I   +  ++  G  +          
Sbjct: 79  --FIMCTSFDDDEKIFNSLKAGAMGYLVKGESMDKILSSIRDVYSGGAPMSFSIARR--- 133

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +  +  N     +       ELT RE E L  +S+G    EIA    IS +TV  ++ +I
Sbjct: 134 VLKHFENKLPEVEGFD----ELTEREKEILELLSQGLLYKEIADKKFISIDTVKKHVGNI 189

Query: 225 MRKTATKTRSGAIAY 239
            RK     +  A+  
Sbjct: 190 YRKLHVNNKVEAVNK 204


>gi|300692972|ref|YP_003753967.1| response regulator, LuxR family [Ralstonia solanacearum PSI07]
 gi|299080032|emb|CBJ52706.1| putative response regulator, LuxR family [Ralstonia solanacearum
           PSI07]
          Length = 210

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 58/244 (23%), Gaps = 37/244 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN     V ++L  +       V            +               L+       
Sbjct: 1   MNM---PVKLLLVDDHPLVRDGVRVRLEAVPHFEVVGEAGDADGALRAARTLS------- 50

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +       L                     L   +   L    
Sbjct: 51  --------PDLALMDIGMRGMNGIALTEQFGEQ--------FPEIAVLVLSMHDNLEYVR 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y       + +   +  +                      A       V  
Sbjct: 95  QVMRAGARGYVLKDAPASELVEAIDAVLAGRPFYSA-----------QLAMRMAEQAVAP 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  +++G ++  IA  LG+S  TV ++  ++ RK   + ++  + +A
Sbjct: 144 TPVEALTPREHDILDGVAQGWSNKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKFA 203

Query: 241 VRNN 244
           V   
Sbjct: 204 VEVG 207


>gi|291300583|ref|YP_003511861.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569803|gb|ADD42768.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 222

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDW 82
             D+  R+  +D        +  + E       VG +               D  +    
Sbjct: 1   MRDVTVRVFLVDDHEIVRRGLANVLEAEPEFTIVGEAATAAEAEARVPAADPDVAILDVR 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D        E       L          F              + +       A +  
Sbjct: 61  LPDGNGVEVCRELKSKLPKLNCLM---LTSFADDEALFDAIMAGASGFVLKQVLGADLLG 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++       +        N  +          EL+ +E + L  I  G T
Sbjct: 118 AVRTVATGQSLLDTKTTTAL-------MNRLRREQSQVDPLCELSQQERKVLELIGLGLT 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +IA  + ++  TV NY++ ++ K    +R+ A   A  
Sbjct: 171 NRQIAGRMFLAEKTVKNYVSHLLAKLGMTSRTQAAVLATE 210


>gi|302555170|ref|ZP_07307512.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472788|gb|EFL35881.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + +S +   +D +  +                          LV
Sbjct: 1   MTAIRLLLVDDDPLVRAGLSFMMGGADDIEIVGEAADGGEVE---------------ALV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +         +      K    +     +    FH   + +    
Sbjct: 46  DRTHPDVVLMDLRMPTVDGLTATERLRAR---KDAPQV-----IVLTTFHADEQVLRALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   +  +     ++      ++ +  A              +  
Sbjct: 98  AGAAGFVLKDTPPAEILAAVRRVAAGDPVLSPTVTRQL-MRHAVGTAADTRRTRARDRMA 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E    +  G ++ EIA  L +S  TV  +++ ++ K     R      A    
Sbjct: 157 ALNDREREVAVGVGRGLSNAEIATGLFMSVATVKTHVSRVLAKLDLNNRVQIALLAYDAG 216

Query: 245 IV 246
           ++
Sbjct: 217 LL 218


>gi|260904389|ref|ZP_05912711.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 220

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L         +  + E   G    + V         +D  +     
Sbjct: 3   HVLIVDDDPLVRAGLRFIFDSADDVECVGEATDGKESIVEVERVHPDVVLMDLRMPGMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +            + P  L    F T    ++      + Y       A I   
Sbjct: 63  REATAELMKLP--------EPPKVLALTTFDTDAHVLSVLDAGASGYLLKDTPPAEIIDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        I+       +    +   N  +  D       +LT RE E + ++++G T+
Sbjct: 115 VRETAEGRTILSSRHARVLLDKYSENGNNARK-DQAIEALSQLTEREREVVQYVAQGLTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EI   L  S  TV  ++ASI  +     R           +
Sbjct: 174 AEIGKRLHCSPATVKAHLASIFTQLQITNRVRLAVLGHDAGL 215


>gi|50121806|ref|YP_050973.1| response regulator [Pectobacterium atrosepticum SCRI1043]
 gi|49612332|emb|CAG75782.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 218

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 35/240 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
           +++ L  + E   + +  +                      +  + E   G       R 
Sbjct: 2   ISVFLVDDHELVRAGIRRIL----------------DDIKGLKVVGEACCGEDAVKWCRS 45

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +      +  R +                 +   ++   P         
Sbjct: 46  NDVDVVLMDMSMPGIGGLEATRKILR--------FTPDIKVIMLTIYTENPLPAKVMQAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y S       +   +  +    R I  D   ++ L            +       E 
Sbjct: 98  AAGYVSKAAAPQEVISAIRAVHAGKRYIASDIAQQMAL---------SQLEPQTDAPLEC 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+++ +
Sbjct: 149 LSERELQIMLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIKHGL 208


>gi|212710646|ref|ZP_03318774.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM
           30120]
 gi|212686727|gb|EEB46255.1| hypothetical protein PROVALCAL_01712 [Providencia alcalifaciens DSM
           30120]
          Length = 208

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 24/226 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+  +S   +  +  E         +         +D  +  
Sbjct: 5   ALIDDHIVVRSGFAQLLTLEPDISIVGQYASAQEAWPH-----LISLDIDVAIMDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +   + D           +   ++ T     +      + Y +       +
Sbjct: 60  ESGLQLLTRLRKKKPDF--------RTIILSIYDTPAFVQSALDAGASAYLTKCCGPEEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  ++  G  +  D +  +           +          ELT RE E    +  G
Sbjct: 112 VQAVRSVYQGGCYLCADAMRAL-----------RQTPQQKQGIQELTNREREVFNLLVAG 160

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   IA  L +S  TV+ + A+++ K   ++    + YA+ +NI+
Sbjct: 161 LSVKVIAEQLNLSHKTVHVHRANVLGKLQCESTIDLVHYALEHNII 206


>gi|148264821|ref|YP_001231527.1| two component LuxR family transcriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146398321|gb|ABQ26954.1| two component transcriptional regulator, LuxR family [Geobacter
           uraniireducens Rf4]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     +  +      +  +           +   L               
Sbjct: 13  IRVLLVDDHKIMRKGLKAILALEHTIEVVAEAANGREAIRKADELL-------------- 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +  +  D           L   +       +       
Sbjct: 59  -PDVVVMDLTMPEMNGIEAIRQIVAAHPD--------VRTLVLSMVLDRACVMETFKAGA 109

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-EL 186
             Y      V  +   +  +      +         + +    +  K  D +      +L
Sbjct: 110 TGYLLKDCAVEELVGAIHTVASGEPYLCP------QITSLVIRDYTKGADANSSDSCVQL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE E L  I+ G ++ EIA   G+S  TV     S+M+K      +    YAVR  +
Sbjct: 164 SKREREVLQLIANGNSTKEIAFTFGVSIKTVAVQRMSVMKKLNLFNVADLTKYAVREGL 222


>gi|113969001|ref|YP_732794.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|114048854|ref|YP_739404.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|117919108|ref|YP_868300.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|113883685|gb|ABI37737.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
 gi|113890296|gb|ABI44347.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
 gi|117611440|gb|ABK46894.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 209

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   S    +       G      V  D      LD  + 
Sbjct: 7   VLVVDDHPLLRKGICQLIASDPDFSLFGEVGG-----GLDALSAVATDEPDIVLLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  M                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNAMRQEGVT--------SRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I  +    +           K+          LT RE++ L  ++E
Sbjct: 114 LLDKLKNAMLGHRVISDEVEEYLY--------ELKNAADEQEWISSLTPRELQILQQLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 189

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|309774947|ref|ZP_07669965.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917273|gb|EFP62995.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 225

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 73/238 (30%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E     +  + +  +    +  +         +                  
Sbjct: 2   IKIMIADDQELIRESLKIILSTKEEFKVIATVGSGKEVIEAIRR---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               +  D I+      D+          + Y  ++    +    F       +      
Sbjct: 46  ----ELPDVILMDMRMPDMDGVHCTKFVKEVYPDVK---VIVLTTFDDDEYVYSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFE 185
           + Y      +  +   +  +   G I   +   +   + +  A  N+      +      
Sbjct: 99  SGYLLKGVSLDELSNAIKTVLQGGAIFNPNVASKAIRIFSQMAKNNVVTEKFQNQSDLPT 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+  E + +  +++G ++ EIA +L  +  T+ NY++ I+ K   + R+    + +  
Sbjct: 159 LSNTEWKIIQQVAQGLSNKEIAELLKFTEGTIRNYLSVILDKLELRDRTQLAIWYIHR 216


>gi|297580300|ref|ZP_06942227.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385]
 gi|297535946|gb|EFH74780.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385]
          Length = 207

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 67/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGIHQLLSFEEEFEVVAEAGN---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + D        LT 
Sbjct: 101 GYLLKDTEPDQLVTLLKQAMQGEKAFSESVER-----------YLLNRDEASNPFDTLTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|227548560|ref|ZP_03978609.1| two-component response regulator [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079389|gb|EEI17352.1| two-component response regulator [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 201

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 69/218 (31%), Gaps = 21/218 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ----EQKLDSIVSSDWPFDLVR 88
           + R++ +D        + A+ +  G  H +             + +D +V+     +   
Sbjct: 1   MIRVMLIDDHPIVRAGLRAVLDSFGDVHVVAEGASGAAIDEMPEGVDLVVTDIQMPE--- 57

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +   E  +       P  L    + T  + +         Y         +   ++   
Sbjct: 58  -IDGIEVTRRLVAAGGPPVLILTTYDTQADVLAAVEAGALGYMLKDAPEPELHAAVLSAA 116

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R++       +     +              D  L+ RE+E L  +  G ++ EIA 
Sbjct: 117 GGKRVLSPQIAGVLAERVMH-------------PDEALSTREIEILQALQTGASNREIAS 163

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  ++  I  K     R+ A+  A    I+
Sbjct: 164 SLFISEATVKTHLIHIYSKLGVDNRTAAVDKARERRII 201


>gi|328886165|emb|CCA59404.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 223

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D    + ++ +   ++ L  +            +                  
Sbjct: 3   IRLLIVDDDPLVRAGLTLMLGGAEGLEIVGEGADGGEVPELVARYA-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +              +    FH   + +       
Sbjct: 49  -PDVVLMDIRMPEVDGLTATERLRGTPGAPE--------VVVLTTFHADEQVLRALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A I   +  +     ++      ++    A Q           G+  EL 
Sbjct: 100 AGFVLKDTPPAEIVAAVRRVAAGDPVLSPAVTRQLMTHVAGQPERTPR-TAAAGRLGELA 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +  G ++ EIA  L +S  TV  +++ ++ K     R           ++
Sbjct: 159 DREREVAVAVGRGLSNAEIATELYMSVPTVKTHVSRVLAKLGLNNRVQIALLVHDAGLL 217


>gi|304410764|ref|ZP_07392382.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307304859|ref|ZP_07584609.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304351248|gb|EFM15648.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306912261|gb|EFN42685.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 209

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 64/220 (29%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   S      +     G      V  D      LD  + 
Sbjct: 7   VLVVDDHPLLRKGICQLIASDPDFSLFGEAGS-----GLDALTAVVTDEPDIILLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  M                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNAMRQEGVT--------SRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I  +    +           K           LT RE++ L  ++E
Sbjct: 114 LLEKLKNAMLGHRVISDEVEEYLY--------ELKDATDEQEWISSLTPRELQILEQLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 200

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 26/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + +   GA    L+         +D  +     
Sbjct: 3   RIVIAEDQRMLRGALASLLDLEDDLEVVGQAGDGAEALALIEKLRPDVCLMDIEMPLMSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   +                 +    F                Y        R+   
Sbjct: 63  LEVAERLQAQGSP--------CRVIILTTFARPGYFERAVKTGVQGYLLKDESSDRLAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R    + ++                     +D  LT RE E L   ++G T+
Sbjct: 115 IRRVKAGHREASPELVF-----------------GSLRRDNPLTAREQEILRLAAKGCTA 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV NYI+ I+ K   K+R  A+  A  N  +
Sbjct: 158 SEIAASLHLSYGTVRNYISEILNKLEVKSRIEAVRLAEENGWI 200


>gi|163731572|ref|ZP_02139019.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
 gi|161395026|gb|EDQ19348.1| transcription regulatory protein degU, putative [Roseobacter
           litoralis Och 149]
          Length = 218

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 26/233 (11%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
             D  +   +   P  ++ +  ++     +       +  E        + + D F    
Sbjct: 5   SPDPIKVLIIDDHPMVAEGIQSILESYEDLRVVGSCNSAREA-------IAQLDHFD--- 54

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D I+      D+    A     +     +           +     +  +     Y   
Sbjct: 55  PDVILMDLNMPDMGGLTATEIVLERRPGTRILILSM---HDSAEYISSALSHGAMGYILK 111

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 I+  +  +    + +       +                       LTGRE   
Sbjct: 112 DVPTDEIKQAIDAVMAGDQYLCTGASGSLQPKEGEVREA-------------LTGREQTI 158

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 159 LLQLAQGKSNRDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVL 211


>gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 229

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 27/245 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +   +IVL          + H  +      R+                    G     LV
Sbjct: 1   MSATSIVLVHAHALFREGLRHHISSEPEF-RIAGEASN--------------GQQAIQLV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
            +       ++  +      ++ R +  +        +               + +    
Sbjct: 46  DYTDPDLVLMEVDLPGVNGLEVSRAIKRTH-----PHVSILLFSSEM---DGQQVVKAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +  R+   L  +      I    L  +  +AA   + F+   +      
Sbjct: 98  AGVAAYLPRNIEWPRLLTVLHEVRRGDYPINEMVLA-LPDVAAQVLSAFRQMVIDEDTQS 156

Query: 185 ---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L  ++ G+T+ EIA+ L IS  TV N+++SI+RK A   R+ A+ YA+
Sbjct: 157 IFSPLSPRELEVLELVAAGRTNKEIALNLDISNQTVKNHVSSILRKLAVNDRTQAVVYAM 216

Query: 242 RNNIV 246
           R   +
Sbjct: 217 RRGWI 221


>gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 77/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ +V+  +     + +       + +  +                    G +   LV 
Sbjct: 3   EKIRVVIADDHPVVRTGLRLRLDMEERIELVGEAAD---------------GVAAIHLVS 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +     +D  + +    + +  +  +              +    +      +     
Sbjct: 48  ELVPDVVLMDLRMPAMDGLEAIEQIRAT--------FPHIAIIVLTTYDEDELMLRSLQA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +  +   +        ++  + +  +  L         +       + +
Sbjct: 100 GVRGYLLKDSGLETVLQAIERAARGEMLLQPELMQRV--LDYAARRAAPASPPPGNSNVQ 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G+ S EI   LGI+R TV +Y+ SI  K    +R+ A+A A+   +
Sbjct: 158 LTEREQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIERGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|325262648|ref|ZP_08129385.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032480|gb|EGB93758.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 206

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 17/219 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYA-LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +      +       G+    L R        +D  +      
Sbjct: 3   ILIIDDDFLVAGALKTILETQEDFHVPACGSDGSEAAALFRQYRPDVLLMDIRMKDMNGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +                 L    F      I         Y     D   I   +
Sbjct: 63  DASAEILKE--------FPDARILLLTTFSDDEYIIKALKLGAKGYLLK-QDYQNIVPAI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    +           + +   ++ +         +E+  RE+E +  I++G ++ 
Sbjct: 114 RAVYSGQTVFGDA-------IVSKIPSLLQKPPAFNYASYEINDRELEIIRLIADGLSNK 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L +S  TV NY++SI+ K   + R+    +  ++
Sbjct: 167 EIASTLFLSEGTVRNYLSSILDKLELRDRTQVAVFYYQH 205


>gi|253991254|ref|YP_003042610.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638302|emb|CAR66925.1| putative two-component response regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782704|emb|CAQ85869.1| putative two-component response regulator [Photorhabdus
           asymbiotica]
          Length = 211

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 32/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  + E     + +L         +  +D                G + +   R   
Sbjct: 5   KVLLVDDHELIIDGIKNLLAAYPRYQVVAQVDD---------------GLAVYAACRDLA 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D++      +  + +  L+                         
Sbjct: 50  PDIVILDLGLPGLNGLDII-----PQLCQRWPDLRIL---ALTAHDDELTASRVLRAGAL 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   T     +   +  +  K   +  +   E            +  +        LT 
Sbjct: 102 AYVLKTSSQQILLAAITSVAAKKSYVDPNLNQEAV---------HRLGEGTNDDSTLLTR 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  ISEG  +  IA +L IS  TV  +  ++MRK      +  + Y+ +  ++
Sbjct: 153 RERQILQLISEGNGNRNIAEMLSISVKTVETHRLNMMRKLKVHKVTELLKYSRKLGLI 210


>gi|187779968|ref|ZP_02996441.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
 gi|187773593|gb|EDU37395.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 26/241 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + NI++  +++     +  + +  D +  +                    G     L 
Sbjct: 1   MNKTNIIVVDDEKLIREGLKIILSTYDDIQVVGLAGD---------------GREALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIREQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTY---EKELNDDDISLKY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTGREINIIREIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 I 245
           I
Sbjct: 215 I 215


>gi|116621568|ref|YP_823724.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224730|gb|ABJ83439.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 225

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 73/236 (30%), Gaps = 27/236 (11%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           IVL  + +     V  +  R      +   +                GA    L +    
Sbjct: 5   IVLVDDHKLVRDGVRMILERGSEFLVVGEAEN---------------GADAVQLCKKSSP 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      +     A +E  ++   ++    +   ++      ++        
Sbjct: 50  DIVLMDIGLPGMNGIE-----ATTELLRHCPSVK---VIILSMYDDENSVVSAIRSGARA 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +         +   L  +   G  +       +      +                L+ R
Sbjct: 102 FVLKKASSNELLDALRTVARGGSYLSSQVSDRL----LQRIQRGDLETHDRSPLESLSPR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E++ L  ++EGKTS +IAV+L +   TV +Y  ++M+K      +G    A+   I
Sbjct: 158 ELQVLRLVAEGKTSKDIAVLLDLGLQTVRSYRKTMMKKLGVNNVAGLTQLALAAGI 213


>gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 231

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 11/193 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             GA+   +V         +D  +      + +  +  +   +   V+          ++
Sbjct: 41  ADGATALRVVEELQPDVVLMDLRMPGMDGLEAIAHI-RNAWPQIAVVI-------LTTYN 92

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMF 173
                +         Y     +   +   +        ++  + L  +  L ++   +  
Sbjct: 93  EDDLMVRGLRSGACGYLLKDTNRETLFHAIQAAARGEMLLQPEMLARVFALTSSQAKDAA 152

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            S+    G   ELT RE E L  ++ G+ S EIAV LGIS  TV +++ASI  K    +R
Sbjct: 153 PSFGNVEG--MELTEREREILQGVARGERSKEIAVRLGISIRTVGSHLASIYTKLGVDSR 210

Query: 234 SGAIAYAVRNNIV 246
           + A+A A+   ++
Sbjct: 211 ASAVALAIERGLL 223


>gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 15/212 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           A +  +     +  R+    + +G  ++  + +  +   +   ++  ++P + +      
Sbjct: 11  ALLDSVHDRELFLRRLEPCAQALGFEYYSYIVFSCYPASRPKMLIEGNYPAEYLEDYRKL 70

Query: 94  EKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLM 145
                  V+ +                            G+   +     D       L 
Sbjct: 71  RVYLQDPVIDQAHHSTLQFHWDEEFYQDRPELWWRMAQFGIREGWSQSIKDCYGRLGILT 130

Query: 146 LLFPKGRIILRDRLWE----IGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWIS 198
               K      +           LA       +   +    +     LT RE + L W S
Sbjct: 131 FAGKKIPEQSPEAGARNETFFLWLAQIAHKTLREALISVNDEAIKDVLTLREKDILRWCS 190

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           EGKTS+EIA+++G+S  TVN +I + ++K + 
Sbjct: 191 EGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222


>gi|50083538|ref|YP_045048.1| response regulator [Acinetobacter sp. ADP1]
 gi|49529514|emb|CAG67226.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Acinetobacter sp. ADP1]
          Length = 211

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +  +      +  +   +                G     +VR  
Sbjct: 2   ITVLVVDDHELVRTGICRMLEDQADVDVIGQAES---------------GEEAINIVRQK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +  R +  +  D           +        P          
Sbjct: 47  HPQVVLLDVNMPGIGGVETTRRLLQTAPD--------TKVIAVSGLAEEPYPSLLLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   +  +   G+    D       +A   A+ +   D        L+
Sbjct: 99  KGYITKGAPIAEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +    ++ EIA  L +S  TVN Y   I  K +  +       A+R  ++
Sbjct: 151 EREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLSIDSDVKLTHLAIRYGLI 209


>gi|304390804|ref|ZP_07372756.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656419|ref|ZP_07909308.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304325687|gb|EFL92933.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492978|gb|EFU82580.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 233

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++++  +     + V         +A +      V       ++           VR 
Sbjct: 18  PISVLVIDDHGLFRAGV---------IAELSKYPDEVQVVGEADSV-----EDAVAAVRQ 63

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           ++     LD  +            A                L   V     + +      
Sbjct: 64  NVPTVALLDVHLPGGHGGGGAEVAAACLGVP-------TRFLALSVSDAAEDVVAVIRAG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y + T     +   ++ +              +              D        L
Sbjct: 117 ARGYVTKTIATPDLVDAIVRVAGGDAAFSPRLAGFVLDAFGAARTDMVGNDSELDS---L 173

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E +  I+ G    EIA  L IS  TV  +++S++RK     R     +A    I
Sbjct: 174 TEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYELSKWAQDRRI 232


>gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 189

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G +   L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEAALQLIESLKPDVSIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 245

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 13/227 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLVRC 89
             R++ +D        + A  E  G      V  +      +Q L  +V SD     +  
Sbjct: 18  APRLLLVDDEPGLRAAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDG 77

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             L +K +    L     +F        +         + Y    FD   +   +  +  
Sbjct: 78  YGLLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQ 137

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----------TGREVECLTWISE 199
           + + +L++            A           +   L          T RE   L  ++E
Sbjct: 138 RQQRLLQEAARFADTDMGQMAKQITEIRSLLAQAEALPSTEPVVHSFTPREASVLQLVAE 197

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L  S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 198 GLMNKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 207

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 38/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q+ ++L  +       +  + +    +A +                    G     + 
Sbjct: 1   MKQIRVLLIEDHFLARMALHSVLSGHAQIAVIGEASD---------------GELGIAMY 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +     FD++  +                 +    +    +      
Sbjct: 46  REHRPDVVVLDLRLPRVSGFDVIIALRKD--------FPTAKIVILSNYQGSEDIYRAVR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +    R +    L  +                      
Sbjct: 98  SGAMAYLTKDASGEELLNAIQSVHRGLRYLPHVALDRLA---------------ERTPAV 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  I++G+++ EIA  LGI+  TV  +++S++ K   + R+ A  YA++  
Sbjct: 143 DLTPRESEVLVCITQGRSNQEIADELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQRG 202

Query: 245 IV 246
           +V
Sbjct: 203 LV 204


>gi|262393869|ref|YP_003285723.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25]
 gi|262337463|gb|ACY51258.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25]
          Length = 188

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       R +      +D  +      +  + +     D           +   V    
Sbjct: 10  GEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPD--------VKIIVLTVHTEN 61

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P          + Y +       +   + ++    R I  +   ++ L     A+     
Sbjct: 62  PFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE---- 117

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +L+ RE++ +  I++G+   +I+  L +S  TVN+Y   +  K         
Sbjct: 118 ----NPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVEL 173

Query: 237 IAYAVRNNIV 246
              A+R+ ++
Sbjct: 174 THLAIRHGML 183


>gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 199

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 60/222 (27%), Gaps = 28/222 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   +     M  + +   G     LV+        +D  +     
Sbjct: 3   RIVIAEDQRMLLGALASLLDLEEDMKVVGKASNGEEAIELVKQHQPDICIMDIEMPIKSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +                 L    F              + Y         +   
Sbjct: 63  LDAAEELRGLN----------CKVLILTTFARPGYFERAIKAGTHGYLLKDSPSEELASS 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    RI   + +                 D  + +   LT RE   L  I++GK +
Sbjct: 113 IRSIMAGRRIYAPELV-----------------DDAYAEVNPLTEREKTVLALIADGKNT 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L ++  TV NYI+ I+ K     R  AI        
Sbjct: 156 KEIAGELFLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197


>gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 218

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 11/222 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   +     +  + +   G +   L          +D  +    
Sbjct: 3   TRVLVADDQDLVRTGLSMILDAQPDIEVVGQAADGKAAVELAHRLRPDVCLVDIRMPGLD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             ++   +A         V+          F                +       A +  
Sbjct: 63  GIEVTELLAGRGVADPIAVV------VITTFDLDEYVHGALRAGARGFLLKDAGPALLVQ 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        +I  +    +    A  A+  +           LT RE E L  ++ G+T
Sbjct: 117 AVHAAAVGDALIAPNITRRLLATLAAGASSKRRTQPIEP----LTQREEEVLKLVAVGRT 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA  L IS  T   ++AS++ K   + R     +A    
Sbjct: 173 NAEIAAELFISLTTAKTHVASLLAKIGARNRVEIAMWAYDTG 214


>gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 12/232 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             +  +    D           +     M  + E   GA+   L R        LD  + 
Sbjct: 1   MTIIRVLIADDQEMVRGAFRMILDSQPDMEVVAEAADGATAVELARSLRPDVCLLDIRMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +A         V Q    +    F                +         
Sbjct: 61  ELDGLEATRLLAG------PAVPQPFKVIVATTFDLDEYVYRALRNGACGFLLKDGSPTL 114

Query: 140 IRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANM----FKSYDVHWGKDFELTGREVECL 194
           +   +      G +I        +  +A+ + +        +         LT RE++ +
Sbjct: 115 LTEAVRAAAAGGSLISPTITVRLLRHMASPEPDRNGRPAAEHRAPARLSEPLTERELDVI 174

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G+T++E+A  L ++ +TV  ++ ++ RK + + R    A+A  N +V
Sbjct: 175 RRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGLV 226


>gi|90423532|ref|YP_531902.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105546|gb|ABD87583.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 242

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 75/231 (32%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L ++            +  + E    +H +    D    +    ++   +P + V     
Sbjct: 10  LEKIRVAATADDLHHVLRHICEAYQLAHAVFHATDTPAVRAERPLLILTYPAEWVENYTR 69

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTFDVARIR 141
            +  K   V+      F  +  +  +  T  +              +   +     +  R
Sbjct: 70  RDYFKIDPVVAIGRVGFLSLDWSTIDQKTASSAKFFREADEFGVGRHGLTTTVRGPSGER 129

Query: 142 IGLMLL----FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLT 195
               +       +        + E  ++A +            G D    L+ RE +C+ 
Sbjct: 130 SLFTVTSNANAAQWTRQRDACIHEFQIIANHFHQRAMISTGLRGGDGPLPLSKREKQCIE 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G    +IA +L +S + +  Y+ S  RK    T S AIA A+   ++
Sbjct: 190 LLAKGFLPKQIAALLDLSESAIRLYLCSARRKLQASTTSQAIAIALSLELI 240


>gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana)
           tropicalis]
          Length = 241

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 81/240 (33%), Gaps = 16/240 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK- 73
             E  T+F    P+   L A ++ ++       R+  +   +G +   L+      + + 
Sbjct: 9   AHEPMTAFAPAPPSV--LPAPVLVVEDEPLLQQRLRNVLLALGYAEDALLFAATLAQARA 66

Query: 74  ------LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT-PPAGM 126
                 L   +      D   C  +++       L            +  + I       
Sbjct: 67  CLADQPLALALIDLHLPDGNGCELIAQLRADDPGLGILVVSA----WSSEDAILGALRAG 122

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +++ +  +   G  I       I  L    A    S          L
Sbjct: 123 ATGYVLKERDDVEVQLSVRSVLRGGAPIDPFIARRILELLPTAAASPASTAAPL--QGVL 180

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + L  +++G ++ EIA  L +SR TV +++  + RK A  +R  A+  A    ++
Sbjct: 181 SVREGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREARSRGLL 240


>gi|261252640|ref|ZP_05945213.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP
           102891]
 gi|260936031|gb|EEX92020.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP
           102891]
          Length = 188

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       R +      +D  +      +  + +     D           +   V    
Sbjct: 10  GEEAVKWCRSNHADVILMDMNMPGIGGLEATKKILRFNPD--------VKIIVLTVHTEN 61

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P            Y +       +   + ++    R I  +   ++ L     A+     
Sbjct: 62  PFPTKVMQAGAAGYLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMALSQFSPASE---- 117

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +L+ RE++ +  I++G+   +I+  L +S  TVN+Y   +  K         
Sbjct: 118 ----NPFADLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVEL 173

Query: 237 IAYAVRNNIV 246
              A+R+ ++
Sbjct: 174 THLAIRHGMI 183


>gi|172062006|ref|YP_001809658.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171994523|gb|ACB65442.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 218

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       V HL     +   +   +        +   T              
Sbjct: 3   LNILLVDDHAIVRQGVRHLLIDRGVAREVTEAETGSDAVAAVDRQT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      +L++ +                      +      +       
Sbjct: 49  -FDVILLDISLPDTNGIELLKRIKRKL-----PGTPVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 SGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|288923247|ref|ZP_06417387.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288345421|gb|EFC79810.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 227

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 56/238 (23%), Gaps = 28/238 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +V+  +       V  L      L  +            +                 
Sbjct: 14  PVTVVVADDHLLIREGVRALLESIAALELVGQAADGDEVIEVVRRT-------------- 59

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +         R +           +                        
Sbjct: 60  -RPDVVIMDLHMPGTDGITATRRITAEH-----PGVAVLVVTMM---EDDASVFAAMRAG 110

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D   +R  +  +     I        +  L                   EL
Sbjct: 111 ARGYLLKGADQDELRRAINAVANGEAIFGPGIAARVLDLLGRP-----PTARVNVAFPEL 165

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE E L  ++ G+++  IA  L +S  TV N++++I  K     R+ A   A    
Sbjct: 166 TAREREILDHLAAGRSNSTIARSLALSPRTVANHVSNIFAKLQVADRTEAAIRAREAG 223


>gi|238855879|ref|ZP_04646168.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           269-3]
 gi|260665015|ref|ZP_05865865.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933370|ref|ZP_06338753.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
 gi|238831542|gb|EEQ23890.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           269-3]
 gi|260561069|gb|EEX27043.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302555|gb|EFA94774.1| transcriptional regulatory protein DegU [Lactobacillus jensenii
           208-1]
          Length = 223

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 76/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   S +  +   +        +                           D
Sbjct: 2   IKVLIADDQELIRSSIQIILEANPKFKVTATVADGEEV--------------------LD 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             ++++ D I+       +   +        Y  ++    +    F       +      
Sbjct: 42  AIKKERPDVILMDVRMPKMDGTVCTKYVKSKYPEIK---VIILTTFDDDDFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   +  ++  G +I  +   ++  L +  A    +  V   +    +
Sbjct: 99  SGYLLKGVSNDQLYQAIETVYQGGAMINPNIAEKVFKLFSKMAQSNYAIQVDQTESKHFS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E   +  +  G ++ EI+  L +S  TV NYI+SI+ +   + R+    +AV+  
Sbjct: 159 KNEWRVIQQVGLGLSNKEISAKLYLSEGTVRNYISSILSQLDLRGRTQLAIWAVQTG 215


>gi|146307398|ref|YP_001187863.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145575599|gb|ABP85131.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 214

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +          +++  L               
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGEACSGEEALLKVREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLMRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++ L +    +    +D        L+
Sbjct: 99  AGYLTKGAALDEMVQAIRLVFAGQRYIDPQIAQQLALKSFQPQSKGSPFD-------LLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+       I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIANCHKVQNISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMV 210


>gi|161522926|ref|YP_001585855.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189348243|ref|YP_001941439.1| two-component system invasion response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160346479|gb|ABX19563.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189338381|dbj|BAG47449.1| two-component system invasion response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 215

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 72/238 (30%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +       + H+   +     +     +               AS   LVR  
Sbjct: 2   ISVLIADDHALVRDGLRHILQNATGFEVVGEAQDS---------------ASTIALVRGT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +       L         +       +       
Sbjct: 47  DANVLVLDLSMPGRNGVELIKQIKDEK-----PGLHIL---VLTMHAEQQYAVRAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   L  +   G  +      +         ++             L+
Sbjct: 99  SGYMTKESASAELVAALTKIAAGGVYVSLTMAEQFAQSLNEPTDLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE +    ++ G++  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 151 DREFDVFRRVTTGESISEIAQALCVSVKTVSTYKTRILEKMQMPNDTALVRYAMRHKL 208


>gi|256826142|ref|YP_003150102.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256689535|gb|ACV07337.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 222

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 11/221 (4%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D       L   +     M  + + + GA               LD  + +      
Sbjct: 6   LADDEPLFTAGLAMILDAQSDMRVVWQAIDGADAIRRHDHVAPSILLLDIQMPTLDGLAA 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            + +  +              +    F T    +T      + +         +   +  
Sbjct: 66  TQRLITAGT--------ASKIIILTTFDTDEYVLTAIESGASGFLVKNTAPDDVVAAIRT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSD 204
           +     +I       +      +     +           ELT RE + L  ++ G+T+ 
Sbjct: 118 VHDGDAVISPGPTRRLFTTFRKRPGGSAADASPTDIRLADELTPRECDILALVARGRTNQ 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EI   L ++  T+  +I ++  KT ++ R     +A+R  I
Sbjct: 178 EICDELWLTMPTIKTHIGNLRAKTQSRDRVQLALFALRVGI 218


>gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 215

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 73/240 (30%), Gaps = 31/240 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ IV+  +     S +  +  +          D                G +   L R
Sbjct: 4   PRIKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADN---------------GETAVRLAR 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   LD  +      +  R +  +        +     L   +             
Sbjct: 49  EHAAKIVILDYSLPVLNGLEATRIIRRT--------MPETEVLIYTMHEDESLIRETLRA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     D + +   +  L              +        +          ++  
Sbjct: 101 GARGYLLKIEDDSELVAAVAALIRGQTYFSPRVSECV------LQDFLDGQSDVTSRN-- 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E + ++SEG+++  IA  LG+S  TV+++  + MRK   +     + YA+RN +
Sbjct: 153 LTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212


>gi|121725788|ref|ZP_01679088.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|147671836|ref|YP_001215461.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|153211907|ref|ZP_01947754.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|153830962|ref|ZP_01983629.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|229528490|ref|ZP_04417881.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|254285705|ref|ZP_04960668.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|262168530|ref|ZP_06036226.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262191666|ref|ZP_06049843.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|121631553|gb|EAX63921.1| transcriptional regulator UhpA [Vibrio cholerae V52]
 gi|124116983|gb|EAY35803.1| transcriptional regulator UhpA [Vibrio cholerae 1587]
 gi|146314219|gb|ABQ18759.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|148873558|gb|EDL71693.1| transcriptional regulator UhpA [Vibrio cholerae 623-39]
 gi|150424202|gb|EDN16140.1| transcriptional regulator UhpA [Vibrio cholerae AM-19226]
 gi|227015255|gb|ACP11464.1| transcriptional regulator UhpA [Vibrio cholerae O395]
 gi|229334852|gb|EEO00338.1| transcriptional regulatory protein UhpA [Vibrio cholerae 12129(1)]
 gi|262023059|gb|EEY41764.1| transcriptional regulatory protein UhpA [Vibrio cholerae RC27]
 gi|262032455|gb|EEY51016.1| transcriptional regulatory protein UhpA [Vibrio cholerae CT
           5369-93]
 gi|327485694|gb|AEA80100.1| Transcriptional regulatory protein UhpA [Vibrio cholerae LMA3894-4]
          Length = 208

 Score =  109 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +      A     +         +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFHA-----LTQAEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|283834157|ref|ZP_06353898.1| DNA-binding response regulator, LuxR family [Citrobacter youngae
           ATCC 29220]
 gi|291070307|gb|EFE08416.1| DNA-binding response regulator, LuxR family [Citrobacter youngae
           ATCC 29220]
          Length = 210

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLEKNSNIQVVLKTDDSRAAIEHLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +   +        ++   LF               
Sbjct: 49  ---PVDLVILDIELPGSDGFTLLKRIKSLQ--------EKTRVLFLSSKSESFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         D L  I  +         +       D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSDTLNFINNI---------NAQKGVLNDM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LM 210


>gi|294139532|ref|YP_003555510.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
 gi|224613098|dbj|BAH24209.1| regulator protein [Shewanella violacea]
 gi|293326001|dbj|BAJ00732.1| DNA-binding nitrate/nitrite response regulator [Shewanella violacea
           DSS12]
          Length = 209

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 31/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L T              +     +                   
Sbjct: 6   SVLVVDDHPLLRRGICQLITSDSDFTLFGEAGSGLDALSAIEE---------------SE 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     + I       +
Sbjct: 51  PDIVLLDLNMKGMTGLDTLNSLRQEGVT--------SRIVILTVSDAKQDVIRLIRAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       R++       +           K     +     LT 
Sbjct: 103 GYLLKDTEPDLLLEKLKKAMLGHRVMSESVENYLY--------ELKDASDEFDWLDNLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  +++GK++  ++  L IS  TV  ++ +++RK   K+R+      +++
Sbjct: 155 RELQILQLVAQGKSNRTLSEHLHISEGTVKVHVKNLLRKANAKSRTEMAVRYLKH 209


>gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 198

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 66/238 (27%), Gaps = 42/238 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +       +  L    + +  +            +  L               
Sbjct: 2   IRIVLAEDQRMMLGALGSLLDLEEDMEVVGKAANGEEVIELVENL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D    +            Q    +    F              
Sbjct: 47  QPDICIMDIEMPLKSGLDAAEILKD----------QPCKIIILTTFARSGYFERARKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    RI   + +                 D+ +  +  LT
Sbjct: 97  SGYLLKDSPSEDLATSIRTIMSGRRIYAPELV-----------------DLAYADENPLT 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  I+EG+++ EIA  L I+  TV NYI++I+ K     R  AI+       
Sbjct: 140 DREKQVMELIAEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNRIEAISRFKEKGW 197


>gi|253687761|ref|YP_003016951.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754339|gb|ACT12415.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 218

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 71/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +    +  +  +         +         +D  + 
Sbjct: 13  VALVDDHIVVRSGFAQLLALENDIQVVGQYASAAQAWPH-----LLKQPIDVAVIDIAMP 67

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                 +   ++ T     +        Y +       
Sbjct: 68  DESGLSLLTRLRQQRPQF--------RAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEE 119

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++   G  +  D L  I           +       +   LT RE E  + +  
Sbjct: 120 LVQAVRVVSSGGIYLCADALHAI-----------RHQQQPPKELLALTPREREIFSLLIN 168

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ + A+I+ K   ++    + +A+++ ++
Sbjct: 169 GISVKSIAEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 215


>gi|196229471|ref|ZP_03128336.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226703|gb|EDY21208.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 225

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           + + + +   V       + LA +I  D  +S       + + +      LVR       
Sbjct: 3   SSDKKTKVLLVEDHAMFRERLAHLISHDFDMSICGETDNIRDAMD-----LVRTAQPDLA 57

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      + ++ +             R   L   +   +       A     Y +
Sbjct: 58  LVDITLKGSSGLEFLKDLKAQGL--------RVPVLILSMHEEMLYAERVLAAGAKGYIT 109

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              +   +   +  +      +       +              DV       LT RE+E
Sbjct: 110 KHENSQTLLGAMQQVLAGKVYLSPQMTDSL-------LKKMSGQDVSVSAMKRLTDRELE 162

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA---VRNNI 245
               I  GKT+ EIA IL +   TV+ Y   I  K   +  +    YA    +  +
Sbjct: 163 VFQLIGAGKTTREIAEILNLGMTTVDTYRTRIKEKLGLRNGTQLQHYASNCAQQGL 218


>gi|163800334|ref|ZP_02194235.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4]
 gi|159175777|gb|EDP60571.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4]
          Length = 210

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 61/235 (25%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       V  L +       +                    GA          
Sbjct: 5   KVMLVDDHPLMRRGVHQLLSFEPDFEVVAEASS---------------GADAVAKAHGLD 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +           +   T    P      +         +
Sbjct: 50  LDLVLLDLNMKGMSGLDTLKALRTDG---CDARIVILTVSDSPA-----DITAIVRSGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   +             A    +          LT 
Sbjct: 102 GYLLKDTEPDELVGLLKQAHKGDKAYSQA-----------IAEYLIANKGQENVFDTLTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  +S G  + EIA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 RETQILKEVSRGYRNKEIAEHLFISESTVKVHMKSLLKKLKMPSRTAATVLYLER 205


>gi|153832913|ref|ZP_01985580.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi
           HY01]
 gi|148870836|gb|EDL69735.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi
           HY01]
          Length = 210

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 62/235 (26%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +       +                    GA          
Sbjct: 5   KVMLVDDHPLMRRGIHQLLSFEPEFEVVAEASS---------------GADAVATAHELE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     +           +   V  +  +         +
Sbjct: 50  LDLVLLDLNMKGMSGLDTLKALRADGCE--------ARIVILTVSDSPADIEAIVRSGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   +             A      +        LT 
Sbjct: 102 GYLLKDTEPDELVELLKQAHEGDKAYSQA-----------VAKYLNEREGQEDVFDTLTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 151 RETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLER 205


>gi|227112458|ref|ZP_03826114.1| response regulator [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|227329599|ref|ZP_03833623.1| response regulator [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
 gi|253689045|ref|YP_003018235.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755623|gb|ACT13699.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|301069190|dbj|BAJ11974.1| response regulator ExpA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 218

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 35/240 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
           +++ L  + E   + +  +                      +  + E   G       R 
Sbjct: 2   ISVFLVDDHELVRAGIRRIL----------------DDIKGLKVVGEACCGEDAVKWCRS 45

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +      +  R +                 +   ++   P         
Sbjct: 46  NDVDVVLMDMSMPGIGGLEATRKILR--------FTPDIKVIMLTIYTENPLPAKVMQAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y S       +   +  +    R I  D   ++ L            +       E 
Sbjct: 98  AAGYVSKAAAPQEVISAIRAVHAGKRYIASDIAQQMAL---------SQLEPQTDAPLEC 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+++ +
Sbjct: 149 LSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIKHGL 208


>gi|23577991|ref|NP_702938.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259506139|ref|ZP_05749041.1| two component response regulator [Corynebacterium efficiens YS-314]
 gi|23494817|dbj|BAC19780.1| putative transcriptional regulatory protein [Corynebacterium
           efficiens YS-314]
 gi|259166260|gb|EEW50814.1| two component response regulator [Corynebacterium efficiens YS-314]
          Length = 225

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E   R       P     L  ++     +         T   G       +        L
Sbjct: 7   EQPIRVLIADDQPLIVTALTTILGTQHNIDVV-----ATASNGQKAIEAAQQWAIDVAVL 61

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D  + +            +    L    F +              +    
Sbjct: 62  DIQMPYVNGIDAAQAIKQHR--------ESTKILMLTTFDSEDLVRRALEVGVQGFLLKD 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGR 189
                +   +  ++    ++  +          Y  N+F+          +     LT R
Sbjct: 114 AGPEALIDAINRIYHGASVLSPEVT-------EYVINVFRVSSPQPPSPCDTLFEALTPR 166

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  +++ +T+ EIA  L I   TV  Y++ ++ K   + R G   +A  + IV
Sbjct: 167 ELEVLKRVAQAETNAEIANYLHIGSETVKTYVSRLISKIGVRDRVGLAVWAHTSGIV 223


>gi|320094467|ref|ZP_08026245.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978600|gb|EFW10165.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 243

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 69/240 (28%), Gaps = 23/240 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R       P  +  LA ++      +            G    +  R D      +D 
Sbjct: 4   PIRIGLADDEPLFAQGLAMILGSQQDFAV-----RWRAVHGQDALVRARRDPVDVLLMDV 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +                 +    F+T    +       + +   T  
Sbjct: 59  QMPVMDGIEATRRLVDEGT--------ASRIVILTTFNTDDSVLRGIDAGASGFLLKTTP 110

Query: 137 VARIRIGLMLLFPKGRIILR----------DRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            A +   +  +     +I                   L A        +      +   L
Sbjct: 111 PAGLFDAVRTVHSGDSVISPGPTSTLLRALRAPGAPPLAAVPTPADAAADGRGILERAGL 170

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TG+EVE L  I+ G T+ EI     +S  TV  ++  ++ KT  + R   +  A+R  ++
Sbjct: 171 TGKEVEILRLIARGLTNQEICDAQWVSMATVKTHVGHLLAKTGARDRVQLVLLALRAGLM 230


>gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 222

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++          +  +   +  L  +           R+  L               
Sbjct: 2   LKILVATGRPLVREGLQRILEGAPGLQVVGHAAGPEPLLDRVRELV-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +++    +LV  +    +     V+   T+   P        +       
Sbjct: 48  -PDVVLLDLSLAAGDARELVGRI---GRMPGSPVVVGITDRADPHA-----LLGLVQAGL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     + A +   +        +I  + + E+   +      +        +   L+
Sbjct: 99  GGYLLANREAAGLSEAIRACTAGIFVIDAEIMSELA--SDSPLYRYVPAPEEVERARLLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I+ GKT+ ++A  L IS  TV N+++ IM+K   + R+ A+ +A+R  ++
Sbjct: 157 QRELEVLSRIARGKTTAQVARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGLI 215


>gi|307328434|ref|ZP_07607610.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886007|gb|EFN17017.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 234

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 60/228 (26%), Gaps = 12/228 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQ 72
           R      +    +    D       L   +     +  + +     H L           
Sbjct: 5   RATPATPATPIRVFVLDDHEVVRRGLHDLLDAEPDIEVVGDAGTVDHALARGPALRPDVA 64

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +       + R +     D           L    F      +         Y  
Sbjct: 65  ILDVRLPDGDGITVCRELRSRMPDLAC--------LMLTSFDDDDALLDAIMAGAAGYVL 116

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                + +   +  +     ++       +    +         +        L+ RE E
Sbjct: 117 KQIKGSDLVSAVRTVASGQSMLDPATTARL---MSTLRGDTAPQEPRDEVLAGLSPRERE 173

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L  I +G T+ +I   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 174 ILVLIGDGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAVLA 221


>gi|300783203|ref|YP_003763494.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792717|gb|ADJ43092.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  ++    + V+ +      +  +                    G S    V   
Sbjct: 2   IKVVLADDEAMMRAGVAAILAADPGIEVVAEAAD---------------GRSAVSQVLAT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +           L     +    F              
Sbjct: 47  RPDVVLLDIRMPGLDGLGAAAEIRRL--------LPATGVIMLTTFGEDEYIERALGLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D   +  G+  +      +       +  +A               +   LT
Sbjct: 99  GGFLLKSGDPRELLSGIHAVAGGAAFLSPKVAQRV--IARLSGGQLARAAAARERIAALT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +  G ++ +IA  + +   TV  ++++I+ +   K R  A   A    +V
Sbjct: 157 PREREVLTLLGSGLSNADIAAKMFVVEGTVKAHVSTILNRLGAKNRVQAAITAYEAGLV 215


>gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 69/242 (28%), Gaps = 27/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V + L  ++    + +  +      L  +                    GA    +V
Sbjct: 1   MSTVRVALADDERMVRTALRVILDAEPDLEVVGEAAT---------------GAEAVSVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +           +  +  +    V+          F           
Sbjct: 46  RQLRPDVVLMDVRMPEIDGIRATEQILSTMDEPPRIVV-------VTTFENDSYVYDALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         +   + L+     ++    +  +           +          
Sbjct: 99  AGAAGFLLKRAGADELVQAVRLVARSDSLLFPAAVRSLAAEYGR-----REAVTAPPWVA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E L  ++ G T+ EIA  +G+   T   ++A+++ K   + R+ A+  A  + 
Sbjct: 154 RLTGREAEVLRLMATGLTNAEIAGRMGVGPATTKTHVAAVLGKIGARDRTQAVIAAYESG 213

Query: 245 IV 246
            +
Sbjct: 214 FI 215


>gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 189

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLQPDVSIMDIEMPIQSGLDVAETLKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  --------ACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|89070144|ref|ZP_01157473.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89044261|gb|EAR50407.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 211

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 36/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + +  +       +  +    D +  +  L        R+ AL            
Sbjct: 1   MSPIRVAIVDDHPMVAEGIQSILESYDDIEVVASLGNGQEAVDRVEALA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +           +                 L   +  +     T  +
Sbjct: 50  ----PDVMLLDLNMPGLGGLSATEMILERR--------PETRILILSMHDSPEYISTALS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         IR  +  +      +       +           ++ D       
Sbjct: 98  HGARGYVLKDVPTDEIRTAIDAVLGGETYLCTGAKGSL---------RPRTTDGREP--- 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE   L  +++G+++ E+A++L IS  TV  +  +I RK    + +G   YA+ + 
Sbjct: 146 -LTTREQTILLRLAQGRSNKEVALLLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHG 204

Query: 245 IV 246
           ++
Sbjct: 205 VL 206


>gi|328885153|emb|CCA58392.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 218

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +      +  +                    G     L R  
Sbjct: 2   IKVLLADDETMIRAGVRAILATDPGIEVVAEAGD---------------GHEAVALAREH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +           +     +    F              
Sbjct: 47  RPDVVLLDIRMPRLDGLGAAEELRA--------AVPDTAVVMLTTFSEDAFVARALGSGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   + D   +  G+  +   G  +       +  +       F        +   LT
Sbjct: 99  SGFLLKSGDPRELIAGVRAVAGGGAALSPTVARRV--IDTLGGERFTRAARARTRLEPLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE E +  ++ G ++ EIA  + +   TV  ++++++ +   + R      A    +V
Sbjct: 157 GREREVVALLAAGLSNQEIADRMYVVEGTVKAHVSAVLARLGLRNRVQLAVLAYEAGLV 215


>gi|320534244|ref|ZP_08034759.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133549|gb|EFW25982.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 232

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 70/229 (30%), Gaps = 17/229 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
              R+  +D           + +       VG +   +   D+ +    D ++       
Sbjct: 3   RPLRIALVDDQDLVRSGFRMILDAQKDMCVVGQASDGVSALDMVEATHPDIVLMDIRMPT 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L    A       +  L+         F      +       + +         +  G+ 
Sbjct: 63  LDGISATHAVLGSHPDLKVL---ILTTFDLDDYLVAAMRAGASGFLLKDATAPELLAGIR 119

Query: 146 LLFPKGRIILRDRLWEI--GLLAAYQAN-----MFKSYDVHWGKDFE-LTGREVECLTWI 197
            +     ++       +     A            +  D    +  + L+ RE E +T +
Sbjct: 120 AVARGDSVVAPSTTRRLLKQWFAPSGPTGPGGLSVRRADAVHTESIDALSDREKEIVTLV 179

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               ++ EIA  L ++ +T+ +++  I+ K   + R+  I  A  + +V
Sbjct: 180 GRAMSNTEIAQHLVLAESTIKSHLNRILHKLELRDRAQLIVLAYESGLV 228


>gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 215

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L  +I  +  +             G +   LVR        LD  
Sbjct: 2   IRVVIADDQPLIRLGLKVLIETEADLELVGEAEN-----GLAALDLVRRVSPDVALLDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +           L     +    F              + +     + 
Sbjct: 57  MPGLDGLAALREITA------DPALAATRVVIVTTFELDEYVFEALRNGASGFVLKDAEP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   + ++     ++       +    A + +   + D        LTGRE E +  +
Sbjct: 111 ADLLRAIRVVAAGESLLSPTVTRRVIEAFARRPSAPAAVD-----LSGLTGREREVMGLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G ++DEIA  L IS  T   +++ +M K A + R+     A +  +
Sbjct: 166 GMGLSNDEIAAHLVISPATARTHVSRVMIKLAARDRAQLAVLANQAGL 213


>gi|283786004|ref|YP_003365869.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
 gi|282949458|emb|CBG89071.1| nitrate/nitrite response regulator protein [Citrobacter rodentium
           ICC168]
          Length = 215

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +       +  L         +                    GA+   L
Sbjct: 3   EATPFQVLVVDDHPLMRRGIRQLLELDPAFDVVAEAGD---------------GATAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRLDPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDVYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++        +     +               
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSERVNEYLRERELF--------GEQDDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 152 SILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 207


>gi|227833142|ref|YP_002834849.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182367|ref|ZP_06041788.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454158|gb|ACP32911.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 202

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 60/229 (26%), Gaps = 31/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++  +  +             G     LV         LD  
Sbjct: 5   IRVLIAEDQSLVRGALTALLNTEPDIEVVADC-----ASGTEVAALVAKHSVDVALLDIE 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  + +A +              L    F              + +       
Sbjct: 60  MPGMNGIDAAQTIAETG----------CRSLIVTTFGRSGYVKRALQAGVDGFLVKDTPP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R+I      +I                    D  L+ RE E    +
Sbjct: 110 DELADAIRRVHSGLRVIDPQLAQDILF----------------TPDNPLSDREAEVCRLL 153

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G  S +IA  L +S  TV N++++IM KT    R  A   A  N  +
Sbjct: 154 LRGLGSADIASQLHLSGGTVRNHVSAIMAKTRAGNRFEAARRAEANGWI 202


>gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 202

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S +S L    D L  +                    GA+ +  ++  
Sbjct: 2   ITLYLAEDQSMLNSALSQLLNLEDDLTVIGSAQD---------------GATAWQAIQAQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +                 +    F          A   
Sbjct: 47  PPDVAILDIEMPKMTGLDVADQIHTHALP--------TKVIILTTFAQKAYFQRAIAAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 99  NGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANM----------------ITAESNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN  +
Sbjct: 143 ERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWL 201


>gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 229

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 10/192 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV         +D  +      ++ R +  S              LF P     
Sbjct: 38  GQQAIQLVDQADPDLVVMDIDLPGVHGLEVARVIKRSHPH-------IGIILFGPTNDGA 90

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFK 174
              +       +       +   +   L  +      I    L   E+            
Sbjct: 91  -TVVKAIRAGVSAMVPPNIEFVDLLATLHQVRRGEYPINDLVLTSPEVAATVLEAFRQMV 149

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D        L+ RE+E L  ++ G+T+ EIA  L IS  TV N+I+SI+RK A   R+
Sbjct: 150 GDDDVQTVFSPLSARELEVLELVAAGRTNREIAAQLDISNQTVKNHISSILRKLAVNDRT 209

Query: 235 GAIAYAVRNNIV 246
            A+ YA+R   +
Sbjct: 210 QAVVYAMRRGWI 221


>gi|39995788|ref|NP_951739.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982552|gb|AAR34012.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 215

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 62/222 (27%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   VS    +  +     GA+   L R        +D  +     
Sbjct: 3   RVLLVDDHRIVLEGLRALVSEHSDLEVVGVACDGATAIELTRQLRPDVVVMDITMPGMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +             R   L   +       +       + Y         +   
Sbjct: 63  IEATRRIVAE--------FPRTRVLILSMESERRFVLEVLKTGAHGYLLKDCSQDELVSA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +         ++            +          RE E L  I+ GK++
Sbjct: 115 IRHVAGGEPYLGPRIT---EMIIRAYMERIPDDTLLTHTLLS--LREREVLQLIAAGKST 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA   G+S  T+     SIM+K    + +    YA+R  +
Sbjct: 170 KEIAFAFGVSLKTIETQRHSIMKKLNLYSVAELTKYAIREGL 211


>gi|326800940|ref|YP_004318759.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551704|gb|ADZ80089.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 213

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 33/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M++    + + +  + +     +  L T     + +  +DC +S            GA  
Sbjct: 1   MSYLNSNIRLAIVDDHQIVIEGLKTLLTNH---SEIEVVDCFIS------------GAEF 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
              +         LD ++      D  + + +   +         + L           +
Sbjct: 46  MAFLTGHEVDVVLLDVMLPDGSGIDWCKEIKIKAPN--------VSVLALSNHAERSFVM 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y      V  +   +   +       R+      ++A    N  K      
Sbjct: 98  KMLQNGASGYLLKNVSVDDLVHAIKAAYKGEIAFSREVN---EIIAKPTLNELKGPP--- 151

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE + L+ I+EGKT+  +A  L +S  TV  +  ++++K   K  +  I  A
Sbjct: 152 ----QLTKREKQILSMIAEGKTTANMAETLFLSPLTVETHRRNLLQKFEVKNVAELIKEA 207

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 208 LQQRLL 213


>gi|114217274|dbj|BAF31200.1| AHL-dependent transcriptional regulator [Serratia marcescens]
 gi|172044716|gb|ACB69923.1| SpnR [Serratia marcescens]
          Length = 247

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 64/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +       G   +        ++   D ++ S +  + V     +       V+  
Sbjct: 15  LREYIDRKLSSFGRLEYAYTVV--SKKNPSDVLIISTYSDEWVELYRTNNFQLTDPVILT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP--- 149
             +   P                   ++     + N +  +  D       L ++     
Sbjct: 73  AFKRTSPFAWDENITLMSDLKFTKIFSLAKHYNIVNGFTFVLHDHMNNLALLSVIIANNE 132

Query: 150 --KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWI 197
             +    L      I +L                   +           T RE E L W 
Sbjct: 133 QGELEARLTSERGAIQILLIDINEQMYRLAGASSSGRQRHHMDMVKPIFTPRENEVLYWS 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  EIA I GIS +TV  ++ +I+ K        AI   V   ++
Sbjct: 193 SMGKTYGEIAAIAGISISTVKFHMGNIVSKLGVSNARQAIRLGVELELI 241


>gi|121996833|ref|YP_001001620.1| two component LuxR family transcriptional regulator [Halorhodospira
           halophila SL1]
 gi|121588238|gb|ABM60818.1| two component transcriptional regulator, LuxR family
           [Halorhodospira halophila SL1]
          Length = 216

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +  +      +  +   +        +                  
Sbjct: 2   IRVVLADDHRLIRQAIDGMLRDIPDIQIVAHAENAEHAVAAVREQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +  S          +   +   V+ + P          
Sbjct: 47  EPDVVLMDLQMPGMGGVEAIRRLYRSH--------PKVGVIALTVYQSGPYPAHALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +  ++   R I  +    + L +                   LT
Sbjct: 99  KGYVHKGADRDELIEAIRSVYLGRRYICHEVARHVALNSL--------DGTGESPFDHLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I  G+    IA  L +S  TV+ Y + I  +   +  +     A+   ++
Sbjct: 151 PREFEVLMRILNGQRGTSIAKDLCLSPKTVSTYRSRIFERLGVRNDAQLTRIAIDYGLL 209


>gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 243

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 64/225 (28%), Gaps = 17/225 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +            +  L    G SH   +         L     + +P         
Sbjct: 11  LRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGRSGLYPDYCTTYPGKWTEIYVD 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITP-----------PAGMDNRYCSLTFDVARIR 141
                   V+      F PV  +  +  +                 +            R
Sbjct: 71  KRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQAYRLFKEARSYDIGPHGLTIPIRGSKGER 130

Query: 142 IGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLT 195
               +           +    + E+ +L+ Y      S       G+   L+ RE +CL 
Sbjct: 131 CLFSVSSNLPKRDWSRLGASSIHELQILSHYLHETTLSASGLREVGRYRTLSRRETQCLQ 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 191 LLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235


>gi|302554181|ref|ZP_07306523.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471799|gb|EFL34892.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 216

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 16/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R             L  ++     +             G     L R        +D  +
Sbjct: 6   RVLVAEDQSAVRAGLVLILRSAPDIEVVGEA-----ADGEQAVALARELRPDLVLMDVQM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R +                 L    F              + +     +  
Sbjct: 61  PRLDGVSATRQVVAEGLAD---------VLVLTTFDLDEYVFGALRAGASGFLLKNTEAR 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   +  +     +I       +  +A + A   +           LT RE E L+ + 
Sbjct: 112 QLLEAVRTVARGEGLISPAVTRRL--IAEFAAKPAREPTADLSVLDRLTRREREVLSCLG 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++  IA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 170 EGLSNAGIAERLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 216


>gi|254491407|ref|ZP_05104586.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224462885|gb|EEF79155.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 226

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +          L  + D L  +                    G   +   +  
Sbjct: 5   ITIMLVDDHAIVREGYRSLLQKQDNLEVIAEACD---------------GTEAYSQYKKY 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +   +         +   L   +       +       
Sbjct: 50  QPDIVVMDISLPGQSGLKAIERIRQFD--------AKAKILVFSMHQNPSFALQATRAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + + D   +   +  +      +  D    + +         +          ELT
Sbjct: 102 LGYITKSSDPEDLIRAIAEVAKNKHTLSADIAQALAM---------EKLGQEQSALDELT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  + + K++ +IA +L IS  TV+N    I +K    +       A++ N+V
Sbjct: 153 VREFEILRLLVDAKSNQDIAELLNISPKTVSNSHYIIKKKLGVSSDIELTRLAIKMNLV 211


>gi|121606412|ref|YP_983741.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595381|gb|ABM38820.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 224

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 63/219 (28%), Gaps = 14/219 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       +   +  T  +  + E       + +  DL  E+    +++     
Sbjct: 6   RLILVDDHPFVRDGVRMRLEATDDIRVVGEAGSVDEAMQLATDLGDERAPHIVLTDISMR 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +      +     +  +           + L             Y         +   +
Sbjct: 66  GMSGIELAALFQHRFPGIDVLVLSM---HNNLEYVKRAIESGAKGYVLKDAPAQELVNAI 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         +                + +    G +  LT +E   L W++ G ++ 
Sbjct: 123 RAVHAGETFFSPE-----------LQQYTEGFRASSGGNSPLTPKESATLAWLACGYSNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +IA  L +S  TV  +  ++ RK     ++  + YA+ +
Sbjct: 172 QIARELSMSVRTVETHRLNLRRKLRITGQAELVKYAIDH 210


>gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 25/223 (11%)

Query: 35  RMIPLDCTVSWTMRMYA---LTEYVGASHF------LLVRWD--LFQEQKLDSIVSSDWP 83
           R+  ++    +   +     LT  V            L +      +   +D  +     
Sbjct: 4   RIALVEDDQPFARTLQRYFALTSAVTCDVVFPNAEEALRKIPKLAPELLLVDINLPKMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + V  +                 L   ++   P            Y         I   
Sbjct: 64  IEFVGQIVQRCPGMLC--------LMLTMYEESPLIFEALKAGACGYLLKRTPPQEIVTA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  +       +                    +  L GREVE L  +++G   
Sbjct: 116 IEEAKAGGSPMTPQIARHV----VNFFQKQPVPPPAAPVEAGLAGREVEVLGLLAQGYLY 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   LGIS +TVN++I  I  K   ++RS A+A      ++
Sbjct: 172 KEIGESLGISTHTVNSHIRRIYEKLHVRSRSQAVAKY--RGLI 212


>gi|238897394|ref|YP_002923071.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465149|gb|ACQ66923.1| putative regulator in two-component regulatory system with BarA
           (LuxR/UhpA familiy) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 210

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 18/221 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  +   +S   R   + +   G   + L          LD  +      
Sbjct: 5   ILIVDDHELIINGIKNMLSPYKRYQVVGQTENGLDVYNLCVQTEPDMVILDLGLPGMNGQ 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++      +  + +  L                           Y         +   +
Sbjct: 65  EVI-----LQLHRRWPQLNIL---VLTAREEEHYASQTLKMGALGYVIKKSPQQILMAAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + I      +  L    ++  + S          LT RE + L  I+EG ++ 
Sbjct: 117 QTVLAGKQYIDPTLNVDSVLKLIKESEHYPSI---------LTSRERQILKLITEGVSNR 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L IS  TV  +  ++M+K      +  I ++ R  I
Sbjct: 168 IIADRLYISEKTVETHRLNMMKKLDVHKVAQLIQWSQRLGI 208


>gi|284033583|ref|YP_003383514.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812876|gb|ADB34715.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 225

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E   +  + L      +  +           ++                  
Sbjct: 9   IRVFLVDDQELVRAGFTMLVDSQPDMRVVGQAGDGGEALEKLRVTG-------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 +    F              
Sbjct: 55  -SDVVLMDVRMPRMDGVEATRQLQSLPTAP--------RVIVLTTFDLDEYAFAAIKAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A +   +  +     ++       +     + A      +       +LT
Sbjct: 106 AGFLLKNTPPADLLSAIRQVHSGDAVVSPSTTRRL---LEHFAGSLPDGEREVPDLADLT 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA +  +S  TV  +I  I+ KT  + R   +       +V
Sbjct: 163 AREREVLVEVARGLSNTEIARLFTLSEATVKTHIGRILAKTGLRDRVALVVLGYETGLV 221


>gi|148272422|ref|YP_001221983.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830352|emb|CAN01286.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 224

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 19/230 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + V   P     LA ++     +    +        G +   L   +      +D 
Sbjct: 5   PIRVAVVDDHPVVRGGLAALLASADDIDVVGQA-----ADGKAAVELAIAERPDVVLMDL 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +     D           L    + T    +T      + Y      
Sbjct: 60  RMPVLDGVGATARIREEAPD--------VRVLVLTTYETDASILTAIEAGASGYLLKAAP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I  G+  +         +      + AA    + +           L+ RE E L  
Sbjct: 112 EEEILAGVRAVARG------EVALAPAIAAALVRQVGRPAAGPATPTPTLSPRETEVLAL 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G+T+  IA  L ++  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 166 VAAGRTNARIARELHVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215


>gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 215

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 65/231 (28%), Gaps = 28/231 (12%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V   P     +A ++  +  +             G       R        +D
Sbjct: 6   DLIRILTVDDHPLLRKGIAALVNGEPDLKLVAEASN-----GEEAIHAYRSHQPDVTLMD 60

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +        +  +                 +    +    + +         Y     
Sbjct: 61  LQMPGIDGLQAIDSIRRE--------FPEARIIILTTYSGDVQVLRALKAGARAYILKGH 112

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +    + I  +   E+   A                D  LT RE++ L 
Sbjct: 113 VHKDLLDTIRAVHAGQKRIPAEIAAELADHAV---------------DDHLTERELDVLR 157

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I EG ++  IA  L I   TV +++ +I+ K     R+ A+   +R  I+
Sbjct: 158 LIGEGNSNKLIADQLSIGEATVKSHVTNILSKLGASDRAHAVTIGLRRGII 208


>gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC
           14579]
 gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 159

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 25/178 (14%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      D+   +   +             +    F              +
Sbjct: 7   PDVSIMDIEMPIQSGLDVAETLKKEKSS--------CKVMILTTFARPGYFERAMKAGVH 58

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +    R + +D ++ +                 W +   L+ 
Sbjct: 59  GYLLKDSPSEDLAAAIRNVMKGKREVSQDLMFGL-----------------WQEQNPLSD 101

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  A     +
Sbjct: 102 REKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 159


>gi|320158939|ref|YP_004191317.1| nitrate/nitrite response regulator protein [Vibrio vulnificus
           MO6-24/O]
 gi|319934251|gb|ADV89114.1| nitrate/nitrite response regulator protein [Vibrio vulnificus
           MO6-24/O]
          Length = 204

 Score =  109 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 65/233 (27%), Gaps = 34/233 (14%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L  +       ++ L +  +    +                    G         +   
Sbjct: 1   MLVDDHPLMRRGINQLLSFEEQFEVVAEASN---------------GTEAVAKAHENELD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      D ++ +         +++         V  +  +         + Y
Sbjct: 46  LILLDLNMKGMSGLDTLKALRADG--CEASIV------ILTVSDSPADIEAIVKAGADGY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +   +   L       +                 A      + +     ELT RE
Sbjct: 98  LLKDTEPDELVELLEKAHLGDKAYSSV-----------VAKYLLQREENTDVFDELTERE 146

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 147 RQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLFLER 199


>gi|315500154|ref|YP_004088957.1| two component transcriptional regulator, luxr family [Asticcacaulis
           excentricus CB 48]
 gi|315418166|gb|ADU14806.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 239

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 15/232 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            E R   +   P     +A +I     +  T    ++ E +       +         LD
Sbjct: 20  SESRLVLIEDDPFVRRHIATLIEAAPDMRLTGEAGSVAEGLS------LLDTGPDLIVLD 73

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +S     ++++                   L   VF      I+      + Y     
Sbjct: 74  LGLSDGSGLEIIKSARQQGL--------ATRILILTVFGDETSVISALTAGADGYVLKDS 125

Query: 136 DVARIRIGLMLLFPKGRIIL-RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             + +   +      G  I      + +  +    +    +          +T RE+E L
Sbjct: 126 AESELIGSIRHTLNGGSPISAPVAAYLLRHIRKDASLAVVAEPELAEDAPGITPREIELL 185

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +++G +  E A +L IS +TV  ++ +I RK A  +RS A+  AVR+ ++
Sbjct: 186 SLLAKGLSYKEAASVLDISHHTVGTHVKAIYRKLAVNSRSEAVFEAVRSGLI 237


>gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 219

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 8/213 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++ +D    W   +       G              +   ++  +    DL    A S  
Sbjct: 6   VMVVDDHPLWRDGVARDLAERGFQVVATAADAGSAVRIARAVRPAVVLMDLNLGEAASGV 65

Query: 96  ---DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                    L+    L         + +       + Y   +     +   +        
Sbjct: 66  DATRMIAGELEGTRVLVLSASGEHDDVLEAVKAGASGYLVKSASAEELVEAVNRTAAGDA 125

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +        +  L   +     +      +  +LT RE E L  +++G T+ +IA  L I
Sbjct: 126 VFTS----GLAGLVLGEYRRMAAAPDEVDRP-QLTDRETEVLRLVAKGLTARQIATRLVI 180

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV N++ S +RK     R     YA+ + +
Sbjct: 181 SHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 213


>gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 224

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           S  + +    D           +     ++A+ E         +   +F++ K D ++  
Sbjct: 6   SSSTRILIVDDHAVVRRGFCSMLRSAGNLFAVEEACEGQ----LAVQMFRQSKPDLVLLD 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L                +              + +       +       +   +
Sbjct: 62  AAMPELDGIEVTRLMHNIEPAAKILIVT-----EMEEDFLQAFRVGASGCILKNVESHEL 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + L+     +        I  L     ++ +    +      LT RE E L+ IS+ 
Sbjct: 117 LNAVGLVLSGYLVFG----RAITKLIVENYHLAEEAGKYSKLAIHLTEREREILSLISQE 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L IS  TV+++ A +M+K  T+  +G +  A+   ++
Sbjct: 173 FTNIEIAERLFISPRTVDSHRARLMQKLGTRNTAGLVRIAMEYGLL 218


>gi|291575304|gb|ADE10229.1| LigR [Actinoplanes liguriensis]
          Length = 218

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 57/227 (25%), Gaps = 14/227 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            T     +    D           V     M  +     GA    L          +D  
Sbjct: 1   MTEPQIDVVIADDQDLVRTGFALVVDSAPDMRVVATAADGAEVVRLAAEFRPDVVLMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +            Q P  +    +          A   + Y       
Sbjct: 61  MPRVDGITAARAILEGN-------AQPPKIVALTTYDNDEYASRILAAGASGYLLKDTTA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G ++       +            +           T RE E    I
Sbjct: 114 EGLTAAIRTVHRGGSVLAPSTTHRLVTAHRQHPARPSAL------LDSFTTREREVFDLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G ++ EIA  L ++  T+  ++  ++ K   + R   + +A RN 
Sbjct: 168 VAGASNAEIADRLNLAEVTIKTHVGRVLAKIGVRDRVNVVIWAYRNG 214


>gi|196233874|ref|ZP_03132712.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222068|gb|EDY16600.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 237

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 66/224 (29%), Gaps = 18/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R  FV   P   D  + M+     +          +        L   +      +D  +
Sbjct: 17  RLLFVDDHPVVLDGYSLMLKSQPDLDICGLATNAGDA-----VQLFEKEHPDLVVMDLNL 71

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 DLV+ +   E             L C +   +             Y +     A
Sbjct: 72  PGRSGLDLVKDLLALE--------PSARVLVCSMHDEMLYAERSLRAGAKGYVTKDCSAA 123

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      +       +  L A+     +       K   L+ RE E      
Sbjct: 124 LLLTAIRRVLGGNIHVSERLAVRV--LEAFAGARPRGSHSPLEK---LSDREFEVFVLFG 178

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           EGKT+ EI   L +S  TV+ +   I +K    T +  I  AVR
Sbjct: 179 EGKTAKEIGAKLNLSPKTVSVHRDHIKQKMEFGTSAEMIRQAVR 222


>gi|307328780|ref|ZP_07607951.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885588|gb|EFN16603.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 217

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 59/222 (26%), Gaps = 11/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L         +  L E   GA    L          +D  +     
Sbjct: 3   RVLVVDDQQLVRMGLRMLFEQAADIEILGEADNGAEAVRLAERLAPDVVLMDLRMPGMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  +              +    F                +       A +   
Sbjct: 63  ITATRRILAARPAAR--------VVALTTFDDDDHLYPVLGAGACGFLVKDTPPAELLNA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +           RD L  I  +A        S          +T RE E L  +  G ++
Sbjct: 115 VRRAADGEAPFSRDTLDRI--VAQAVHTRSASDAGPDIPAPAITPREREVLGLLGVGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +   TV  ++AS+M KT    R      AVR  I
Sbjct: 173 KEIADRLHLGVTTVKTHVASLMTKTGRDNRIRLAVLAVRAGI 214


>gi|293605159|ref|ZP_06687548.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816415|gb|EFF75507.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 218

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 57/229 (24%), Gaps = 18/229 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R   V   P   D L   +     +            +      L           
Sbjct: 5   PDAIRLLLVDDHPLVRDGLRLRLETVPRLHVVGEAGNAAAALAFLAASLANAP-DGATLP 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
             ++              ++  + Y  +         + +     +         Y    
Sbjct: 64  HLVLMDLNMPGGGGLELTAQLHERYPQIAVL---VLTMHNNPEYMVQAVKAGARGYLLKD 120

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I   +  +              +                       LT RE + L
Sbjct: 121 EPAEEIVTAISAVMEGRSYFSASVALRL--------------SQASAPATLLTQRERDVL 166

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             I+ G+ + +IA  LG+S  TV  +  +I RK     ++  I YAV N
Sbjct: 167 RHIASGQANKQIAHALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVEN 215


>gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 207

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 63/220 (28%), Gaps = 20/220 (9%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D       L   +     +  + E   G     L R        +D  +        
Sbjct: 6   LVDDHPVVREGLRGMLEAEDDLTVVGEAGSGDEAVALDRVKQPDVVLMDLRMPGLDGVGA 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +      +          +    + T  + +         Y         +   +  
Sbjct: 66  IHAILKETPAR--------RIVVLTTYETDADILRAVEAGAAGYLLKDASRTELAGAIRA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 ++           A    +  ++ +        L+ REVE L  +++G+T+ EI
Sbjct: 118 AHRGETVLAPSV-------AGKLVHRMRNPEPVSP----LSAREVEVLRLVAKGRTNAEI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L I   TV  ++  +  K     R+ A+  A+  +++
Sbjct: 167 GRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRHLL 206


>gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 13/172 (7%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D I+      D+      +     Y  +     L                     Y   T
Sbjct: 49  DIIIIDTCLPDIDSAALCANIRMEYPTV---MVLVLSFLKEERYIDRLLQSGAGGYVLNT 105

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   +   +  ++  G  +       +                       LT RE E L
Sbjct: 106 ADKDELLFAVHSVYAGGVYLSPVIKQAMS----------SERVGLQKNFPPLTRREKEVL 155

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ISEG T+ EIA  L IS +TVN++   ++ K   K  +  I YAV N ++
Sbjct: 156 SLISEGNTNAEIAEKLFISADTVNSHRKKLLAKLEVKNTAMLIKYAVDNKLL 207


>gi|134103488|ref|YP_001109149.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005968|ref|ZP_06563941.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916111|emb|CAM06224.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 217

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  ++    + V  + +    +  +                    G +   LV   
Sbjct: 2   VRVVLADDEAVIRAGVRAILSSDPEIEVVAEAAD---------------GRAAVDLVHRH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +  +              L    F           G  
Sbjct: 47  RPDVAVLDIRMPVLDGLAATEQLRGTG----------TAVLIMTTFDEDDYITRALHGGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   T D   + +G+      G  +       +  +                +   L+
Sbjct: 97  SGFLLKTGDPRELVLGVRAAADGGAYLSPPVARRV--IRDLGGPRLSREVAARNRIEGLS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G ++ EIA  + +   TV  Y+++I+     + R  A   A    +V
Sbjct: 155 ERERQVLALVGAGLSNAEIARRVHVVEGTVKAYVSAILNHLGFRNRVQAAILAYEAGLV 213


>gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 222

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 70/223 (31%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M+ + E    A    +V         LD  +S+   
Sbjct: 16  RIVLIDDHAIVRQGLRFILDREQDMHVVGEASSAAEAMTVVAQQHPDIVLLDLKLSTGSD 75

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +   +   +        +   L    F      +         Y     D   +   
Sbjct: 76  IEGLEVCSELTR-----RFPQAGVLVLTTFLDDALVLEAIHRGAKGYVLKDVDTTALVSS 130

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                      A++         ++  LT RE + L  ++ G ++
Sbjct: 131 IRAVARDESAFDPRS-----------ASVMMRTIRTAPEEPTLTDRETKVLELLARGMSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L IS  TV  ++ +IMRK +  TR+GA+  A +  ++
Sbjct: 180 REIGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKLGLI 222


>gi|118472166|ref|YP_889490.1| DevR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173453|gb|ABK74349.1| two component transcriptional regulatory protein devr
           [Mycobacterium smegmatis str. MC2 155]
          Length = 211

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     +  L +    L  +   D       R+ A                
Sbjct: 2   IRVFLVDDHEVVRRGLIDLLSADPELDVIGEADSVSQALARIPAA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     +           L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRDLLSHMPNLRC--------LMLTSFTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++           A    +  +           LT
Sbjct: 99  SGYVVKDIKGMELAQAIKDVGAGKSLLDNRA-------ATALMSKLRGDAERSDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A + 
Sbjct: 152 QQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKL 207


>gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 215

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 66/246 (26%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+     V IV+  +       +  L  R   L  +            +   +       
Sbjct: 1   MSAPPGPVRIVIVDDHSIVRQGLRSLLERQPDLEVVGEGATAAEAVAVVARTS------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +SS    + +        +           L    F      +
Sbjct: 54  --------PSVVLLDLKLSSGEDSEGLTLCERLTGEHD-----GLGVLVLTTFLDDKLVV 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y     D   +   +  +                               + 
Sbjct: 101 EAVRRGARGYVVKDVDTTELVRAIRAVARGESAFDSRSAAA-----------MVHSMNNR 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             + ELT RE+  L  ++ G ++ +I   L IS  T   ++ +IMRK    TR+ A+  A
Sbjct: 150 SSEPELTERELGVLRLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEA 209

Query: 241 VRNNIV 246
            +  ++
Sbjct: 210 SKRGLI 215


>gi|256830064|ref|YP_003158792.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579240|gb|ACU90376.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 222

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 23/234 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
            +R   +   P   D L     LD      +   A T   G     L +        +D 
Sbjct: 4   PKRILIIDDHPLYRDGL--RARLDTRPDLCVVGEAGTCAEG---LRLTQTLAPDLAVIDI 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +L R + L+  D           L   +   L           + Y S    
Sbjct: 59  SLPDGSGIELTREIRLARPD--------LPVLIVSMHAKLDFIAAAFQAGASGYMSKESG 110

Query: 137 VARIRIGLMLLFPKGRII----LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              I   +  +   G+ +        L  +  ++       +           L+ RE +
Sbjct: 111 GEGILQAIETVLSGGQYLDGSLSPSVLRRLSDISG------RKAKTVDASYGSLSLREQQ 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  ++EG T +EIA  L +SR TV N+  +IM K   K+    + +A R  ++
Sbjct: 165 VMRLLAEGLTPEEIAAKLFVSRKTVLNHRYAIMTKLGIKSPVAFVRHAARLGLI 218


>gi|86360200|ref|YP_472089.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86284302|gb|ABC93362.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 25/234 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N   + R   + + P   D L  ++     +         T  +  +   + R    Q 
Sbjct: 1   MNEGAKIRVLLIDNHPLVLDGLKAVLETFDHIEVAG-----TAGLAQTGLDIARQIQPQV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      D +              L +   +   +  +     +        Y 
Sbjct: 56  VLMDINMPKLSGIDAIELFRSE--------LPQTRVVMLSMHDSREYISSSVMRGAAGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G                   +         G D  LT RE 
Sbjct: 108 LKDVSTEEIVAAIETVADGGTYFSSG-----------VFDALMRERAEQGSD-PLTPRER 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA+ + I
Sbjct: 156 DTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYALDHGI 209


>gi|308051091|ref|YP_003914657.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633281|gb|ADN77583.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 204

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 36/238 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   ++L  +       +  L                      +       G     L+
Sbjct: 2   AEPWQLLLVDDHPMLRRGLCQLLAGDP---------------RFLSPWEAANGPEALALL 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D +R +             R   +   V     +      
Sbjct: 47  ARQQPDLVLLDLNMRPLSGLDTLRAIRRD--------FPRLKVVMFTVSDHPRDVQAVLD 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y     +   +  GL  +     ++       +              +       
Sbjct: 99  AGANGYLVKDSEPEELVEGLAEVMAGQAVLTPRLEGALA-------------EAEENWAA 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +LT RE +    I+EGK++  I   L IS  T   ++ ++MRKT   +R         
Sbjct: 146 QLTPRERQIAELIAEGKSNKAIGEALFISEGTAKVHVKNLMRKTDCHSRVELALKVRE 203


>gi|302559849|ref|ZP_07312191.1| LuxR family DNA-binding response regulator [Streptomyces
           griseoflavus Tu4000]
 gi|302477467|gb|EFL40560.1| LuxR family DNA-binding response regulator [Streptomyces
           griseoflavus Tu4000]
          Length = 230

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 66/224 (29%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     +  + E   GA      R        LD  +    
Sbjct: 18  TRILLADDHALVRRGVRLILDGEPDLTVVAEAADGAEALEQAREHRPDLAILDIAMPRQT 77

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +           L     L   ++          A   + Y   +     +  
Sbjct: 78  GLQAAREL--------SRTLPETRILILTMYDNEQFFFEALAAGASGYVLKSVADRDLVE 129

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      +    +  +       A   ++          +T RE E L  ++EG T
Sbjct: 130 ACHATMRGEPFLYPGAVNALIHNYLDLAREGRALPAKA-----ITDREEEILKLVAEGHT 184

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S +IA +L IS  TV  + A+++ K   + R     YA+R  ++
Sbjct: 185 SQQIAGLLVISPKTVERHRANLLAKLGLRDRLELTRYAIRVGLI 228


>gi|238752346|ref|ZP_04613824.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380]
 gi|238709387|gb|EEQ01627.1| hypothetical protein yrohd0001_8030 [Yersinia rohdei ATCC 43380]
          Length = 210

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   +    R   + +   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIRNMLQPYPRYQIVGQAENGLDVYNLCRQTEPHLVIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          H         +     Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPTMKIL---ALTARHEEHYASKTLSHGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      I      ++        N          K   LT RE + L  I+EG  
Sbjct: 115 AIQTVSVGKSYIDPALNSDL-------VNKLAKGTD--DKQPVLTPRERQILKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRIIAEQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|229522242|ref|ZP_04411658.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM
           11079-80]
 gi|229340227|gb|EEO05233.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM
           11079-80]
          Length = 207

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGN---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRSDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + +        LT 
Sbjct: 101 GYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNREHTSNPFEALTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|254491454|ref|ZP_05104633.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224462932|gb|EEF79202.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S +  L  ++  ++ +   +                G   +      
Sbjct: 5   IRVMLVDDHAVVRSGLCRLLEQNTDISVVGEAES---------------GEQAYQTYPEI 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + VR +                 +   +       I       
Sbjct: 50  SPDVLVMDMSMPGMGGLEAVRRILNRWS--------GAKVIMFSMHENATYAIQSLTAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + +     +   +  +      +  D   ++ L         +S          LT
Sbjct: 102 MGYVAKSGHAEDLVKAVREVKSGKSFLSSDMAHKVAL---------QSLAGDDNPTQRLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++EGK  D+IA  L I + TV NY  S+ +K    +    +  A++  ++
Sbjct: 153 SREFEVFRLLAEGKLVDDIASRLNIGQKTVANYQTSLKQKLGIHSPVDLVRLAMKYGVI 211


>gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 209

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 25/224 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D +A  + L   ++  + M  + +   G       R        LD  +    
Sbjct: 7   TRVLLVDDHMAIRMGLMTAINDALDMEVVADVEDGQEAIAAYRKYQPDVVVLDLRMQGMS 66

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               +  +                 L    +    E           +      + R+  
Sbjct: 67  GVQTLHALRAE--------FGAVRVLVYSNYARGEEVYQAIKAGAAGFVVKEMALDRLLE 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + ++   G+ I       I                       L+ RE+E L  +++G +
Sbjct: 119 AIRVVNSGGQYIPEQVAARIAERLLA----------------GLSPREMEVLKLLAKGLS 162

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  LG+   T+  Y+A+I  K     R+ A+  AV+  I+
Sbjct: 163 NKEIATQLGLVVGTIKIYVANIFNKLGVSDRTQALVTAVKRGII 206


>gi|320086683|emb|CBY96454.1| Nitrate/nitrite response regulator protein homolog [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 215

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 31/236 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+    +++  +       +  L         +                    GAS   L
Sbjct: 3   EVTPFQVLIVDDHPLMRRGIRQLLELDPAFBVVAEAGD---------------GASAIDL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      D +  +                 +   V  +  +     
Sbjct: 48  ANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT--------AQIIILTVSDSASDIYALI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     D   +   +      G++                    + +       
Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRV--------NEYLRERERFGAQEDPF 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT RE++ L  +++G ++ +IA +L IS  TV  +I +++R    ++R  A   
Sbjct: 152 RILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRNLNVRSRVAATIL 207


>gi|307326772|ref|ZP_07605964.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887535|gb|EFN18529.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 206

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     L          +D  +     
Sbjct: 3   RILIADDHPVVREGLRGMLGAEPDLTVVGEADSGPRAEALCVSLRPDVVLMDLRMPDGGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  M  +              +    + T  + +         Y       A +   
Sbjct: 63  VESIARMTAAGLP--------SRVIVLTTYETDGDILRAVEAGAAGYLLKDMARAELAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +      +    +           L+ RE   L  +++G T+
Sbjct: 115 VRSAARGETVLAPSVAARLMDQLRDRPERPR-----------LSERETAVLRLVAQGCTN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L I  +TV  ++     K     R+ A+  A+R  ++
Sbjct: 164 AEIGRRLFIGESTVKTHLLRAFGKLGVDDRTAAVTSAMRLGLL 206


>gi|290956336|ref|YP_003487518.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645862|emb|CBG68953.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 235

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 65/241 (26%), Gaps = 24/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + ++ +   +D +  +                    G     LV
Sbjct: 12  MTAIRLLLVDDDPLVRAGLTFMLGGADDIEIVGEAAD---------------GDEVDALV 56

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +         +                 +    FH   + +    
Sbjct: 57  DRTRPDVVLMDIRMPTVDGLTATERLRTRADGPQ--------VVVLTTFHADDQVLRALR 108

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   +  +     ++       +   AA  A   +       +  
Sbjct: 109 AGAAGFVLKDTPPADIVDAVRRVAAGDPVLSPAVTRRLMAHAADGAPGTRHDTARA-RLA 167

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E    +  G ++ EIA  L +S  TV  +++ ++ K     R           
Sbjct: 168 VLNDREREVAVAVGRGASNAEIAAELFLSVATVKTHVSRVLAKLGLNNRVQIALLTYDAG 227

Query: 245 I 245
           +
Sbjct: 228 L 228


>gi|170760443|ref|YP_001786768.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407432|gb|ACA55843.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 217

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + NI++  +++     +  + +  + +  +                    G     L 
Sbjct: 1   MNKTNIIVVDDEKLIREGLKIILSTYNDIEVVGLAGD---------------GREALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIKEQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTY---EKELNDDDINLKY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 IV 246
           IV
Sbjct: 215 IV 216


>gi|153824418|ref|ZP_01977085.1| transcriptional regulator UhpA [Vibrio cholerae MZO-2]
 gi|149741972|gb|EDM56001.1| transcriptional regulator UhpA [Vibrio cholerae MZO-2]
          Length = 208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +      A     +         +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFHA-----LTQAEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVKG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S  TV+ + A+I+ K         I +A++++++
Sbjct: 160 KEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 260

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 75/229 (32%), Gaps = 18/229 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
             ++       +    + A     G              +     V + +P   V    L
Sbjct: 33  FEQIKAATNVDAAIRILQA---EYGLDFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLL 89

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRI 142
           +   K   ++++  E   P   +  E                   N Y     D A+ R 
Sbjct: 90  NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 149

Query: 143 GLML----LFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWI 197
            L L       +   ++R    E   +A                    L+ RE+ECL W 
Sbjct: 150 LLSLNARIPADEWSELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPTLSPREIECLHWT 209

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 210 ALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258


>gi|119715190|ref|YP_922155.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535851|gb|ABL80468.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 216

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 30/243 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     ++ + L  + E     +  L   S  +  +      V  + R+ AL        
Sbjct: 1   MTEGPGKIRVYLLDDHEVVRQGLRALLESSGDIEVVGESGSAVDASNRIPAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD+ +      ++ R +           +          +       
Sbjct: 53  -------RPDVAVLDARLPDGSGIEVCRTVRA-----VDPTISAL---ILTSYDDDEALF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y       + +   +  +     +I                   +      
Sbjct: 98  AAIMAGAAGYVLKEIKGSDLVSAIRQVAAGNSLIDPTLTAR-------VLERVRHPPTTA 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  ELT +E++ L +I+EG T+ +I   + ++  TV NY++SI+ K   + R+ A   A
Sbjct: 151 PELAELTEQELKLLGYIAEGLTNRQIGERMYLAEKTVKNYVSSILAKLGLERRTQAAVLA 210

Query: 241 VRN 243
            + 
Sbjct: 211 SKL 213


>gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 210

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L  ++ ++  +    +        G       +        +D  
Sbjct: 2   IRLLLVDDQDIFRQGLVALLSVETDLEVVGQARN-----GLEAIARAKALQPHVILMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +      ++Y  ++         F      +         Y       
Sbjct: 57  MPVCDGVQATREI-----HQHYPWIRIL---VLTTFDDDEYILQSLQMGALGYLLKRTPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTW 196
             I   +  +      +          +A    +  KS         +L + RE+  L  
Sbjct: 109 QEIASAIRSVSQGYSQLGP-------TIALKVFSQLKSSQPSPNSYQDLLSKREIGVLKL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + +G+ + EIA  L +S  TV NY+  I+ K   + R  A  ++ +N
Sbjct: 162 VGQGRNNQEIAQELHLSEGTVKNYVTQILNKLEMRDRIQAALWSQQN 208


>gi|227501858|ref|ZP_03931907.1| possible response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077352|gb|EEI15315.1| possible response regulator [Corynebacterium accolens ATCC 49725]
          Length = 223

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 22/233 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V  +    D     + L   +     +    + VG            Q   +D I+
Sbjct: 8   RRDVVIRVLLADDHEIVRLGLRSVLEGAEDI----DVVGEVATAEAAVSAAQAGGIDVIL 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITPPAGMDNRYCSL 133
                   +    +    +    ++              + T  + +         Y   
Sbjct: 64  MDLRFGAGLEGTRVMGGVEATAQIRSSMSTPPKVLVITNYDTDADILGAIEAGAVGYLLK 123

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +         +       +                       LT RE+E 
Sbjct: 124 DAPPQELLDAVHSTAEGDSALSPIVADRL-------------MTRVRTPRTSLTPRELEV 170

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ +I   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 171 LQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 223


>gi|326381697|ref|ZP_08203391.1| putative two component system response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199944|gb|EGD57124.1| putative two component system response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 213

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V   P     +A ++     V    +  +           LV+        +D  
Sbjct: 2   IRVALVDDQPLFRGGIAMILESQPDVDVVAQESSALNLAD-----LVKTASPDVILMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +              P  L    F              + +       
Sbjct: 57  MPGIDGITATRQLIA------DFGAAAPKVLVLTTFDVDEAAARAIQAGASGFVLKDAQP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    +++      ++                   +   LT RE E L   
Sbjct: 111 EFLLASVRAVADGSQVVAASATRQL------FERHGSRNADPGPEYDTLTAREREILVRA 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA    +S  TV  +++ I+ K + + R   + YA  + +V
Sbjct: 165 ASGLSNAEIASAEFLSEATVKTHVSRILAKLSLRDRVQLVVYAYEHGLV 213


>gi|241889344|ref|ZP_04776645.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
 gi|241863887|gb|EER68268.1| two-component response transcriptional regulator [Gemella
           haemolysans ATCC 10379]
          Length = 199

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +S    + ++ +   G     L+  +      LD  +      
Sbjct: 3   LLIAEDQSMLRDAMSTLLSMEDSVESVLQAKDGKEAINLISTNDIDVAILDVEMPEATGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +  +              +    F  +           + Y      +  +   +
Sbjct: 63  DVLEYIRSNNI--------HCKVIIVTTFKRMGYFERAIKNNVDAYVLKDRSIDELMKTI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +    + +                 +  +     LT +E   L  I EG  + 
Sbjct: 115 NNVLAGNKEYSPELM-----------------ENIFNSHNPLTNQEKIILLKIKEGLPNK 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  T+ NYI++I+ K   K R+ A+  +     +
Sbjct: 158 EIANELFLSEGTIRNYISNILTKLNCKNRTEAVKKSTEEGWL 199


>gi|126174775|ref|YP_001050924.1| response regulator [Shewanella baltica OS155]
 gi|153001117|ref|YP_001366798.1| response regulator [Shewanella baltica OS185]
 gi|160875789|ref|YP_001555105.1| response regulator [Shewanella baltica OS195]
 gi|217972959|ref|YP_002357710.1| response regulator [Shewanella baltica OS223]
 gi|304409202|ref|ZP_07390823.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307303205|ref|ZP_07582960.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|125997980|gb|ABN62055.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151365735|gb|ABS08735.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
 gi|160861311|gb|ABX49845.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|217498094|gb|ACK46287.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
 gi|304353023|gb|EFM17420.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306913565|gb|EFN43987.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|315267978|gb|ADT94831.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISIYLVDDHELVRTGIRRILEDERGIKVVGEAPD---------------GETAVQWARQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   V    P          
Sbjct: 47  EADVILMDMNMPGMGGLEATRKILRYQ--------PHAKIIVLTVHTEDPFPSKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L     A+              L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPADE--------NPFKSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 209


>gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 63/223 (28%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   ++ T  +  + E   G     +          +D  +     
Sbjct: 37  RLLLCDDHAVVRAGLRALLASTDGIEVVGEAGSGEEALAMAAPLRPDVVLMDLQL----G 92

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +    A             P  L   +F T  +           Y         +   
Sbjct: 93  EGMDGVTATRRLVSGDP--PAPRVLVLTMFDTDADITRAIEAGATGYLLKAERPEELFAA 150

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +          +A       +S          L+ RE + L  ++ G  +
Sbjct: 151 IRNAASGRTALS-------APVADRVLARMRSPRP------GLSERERDILRQLARGLGN 197

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++  I  K   +TR+GA+A A    ++
Sbjct: 198 REIARALFISEATVKTHLGRIYGKLGVETRAGAVAVATERRLL 240


>gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 189

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVVGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  P--------CKVMILTTFARPGYFERAMKTGVHGYLLKDSPSEDLASAIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ ++ +                 W +   L+ RE E L    EGKT++EIA +L +S  
Sbjct: 116 QELMFGL-----------------WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLAKLEAKNRIEAITIAEEKGWI 189


>gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 213

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 71/241 (29%), Gaps = 38/241 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  +     + ++ + +    L  +                    GA    ++ 
Sbjct: 7   PKIRVLIVDDHPVVRAGLTSMLSTKPQLHMLPAASG---------------GAEALTVLE 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +      LD  +      +++  +              P  +    +    +       
Sbjct: 52  EEQVDVVLLDLKMPGINGIEVLHRLNNRG--------ALPRTIILSSYEMDEDIYRAIQA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I   +  +                  + +                E
Sbjct: 104 GARGYLIKDTTQEEILEAIAAVHAG---------------SLHLPRHIAQRISERIGRQE 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++G T+ EI  + GIS NT  N++ SI++K     R+ A   A+   I
Sbjct: 149 LTRRETEILEMLAKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRGI 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|126729883|ref|ZP_01745696.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126710002|gb|EBA09055.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 212

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 22/218 (10%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR------WDLFQEQKLDSIVSSDWPFDLVR 88
           R+  +D        + A+ +       +          D   E   D I+       L  
Sbjct: 4   RVTIVDDHPLVAEGIEAILDSYDDISVVATLSDGQSMIDRLDELNPDVILMDLNMPGLGG 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A     +     +           T     T        Y         I+  +  + 
Sbjct: 64  LSATEMILERAPDTRILVLSM---HDTPEYISTALTHGARGYVLKDVPTDEIKHAIDAVM 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R +       +  +             + G    LT RE   L  +++GK++ E+AV
Sbjct: 121 RGERYLCTGASGALTPI-------------NTGGRDPLTNREQTILLQLAQGKSNKEVAV 167

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  +  +I RK    T +G   YA+ + ++
Sbjct: 168 ALDISVRTVETHRKNIKRKLGIATTAGLTRYALEHGVL 205


>gi|87122198|ref|ZP_01078081.1| response regulator GacA [Marinomonas sp. MED121]
 gi|86162518|gb|EAQ63800.1| response regulator GacA [Marinomonas sp. MED121]
          Length = 197

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 15/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G    L  +  L     +D  +         + +          VL +   +        
Sbjct: 17  GEDAVLQTKAKLPDIVLMDVHMPGIGGLGATKEIKR--------VLPKTKVIALSALDDN 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P          + Y +    +  +   +  +   G+ I  D   ++ L    +       
Sbjct: 69  PYPTKLIEAGASGYITKGIALDEMIGAIEKVAKGGKYISSDVAQKMALSQMSKEEGESPL 128

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        L+ RE++    I + +   +IA  L +S  TVN Y   +  K +  +    
Sbjct: 129 DS-------LSDRELQIAQMIVDCRKVQDIAEKLNLSAKTVNTYRYRLFEKLSIGSDVEL 181

Query: 237 IAYAVRNNIV 246
              A+R+N++
Sbjct: 182 ARLAMRHNLL 191


>gi|302039255|ref|YP_003799577.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300607319|emb|CBK43652.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 15/218 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEY----VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           AR++  D           + +     VG         +       D ++       L   
Sbjct: 4   ARVLLADDHSLVLEGFRRILDDQCELVGMVEDGRALLEAVDRVHPDIVILDVSMPLLNGI 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A ++  K +  ++    +F  +        +      + Y      V  +   +  ++ 
Sbjct: 64  DAATQLKKTHPSIK---VIFVTMHADADYVRSAFEAGASGYLLKRSAVDELEQAIRAVWA 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAV 208
               I         L+A    ++  +       +   LT R+ E L  ++EG+T+ +IA+
Sbjct: 121 GHTYITP-------LIAKDLLDVLLTLGAGQAQQRKTLTFRQREVLQLLAEGRTAKDIAL 173

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  + A +M +    T +  I YA+ +  +
Sbjct: 174 RLKISTRTVEFHKAQLMEQLNLHTTAELIKYALTHGFI 211


>gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430]
 gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC
           49946]
 gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430]
          Length = 240

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 13/215 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            T  +      +    + L         +  + + S++P D +         +   VL+ 
Sbjct: 26  ITRLIEQQLRALELDFYSLFIRHPVPFTRPKTFLYSNYPQDWLDHYWREGFYQLDPVLEM 85

Query: 105 PTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RI 153
            +                          G+ +          R    L +          
Sbjct: 86  CSSPGKIWLWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRSVGILSMSTANSQKLIK 145

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--TGREVECLTWISEGKTSDEIAVILG 211
           +  +   +I  +         + +       +L  + RE+E L W +EGKTS EI++IL 
Sbjct: 146 LTTETELKIQYVLELSMAALININDISMATTKLDFSERELEILKWTAEGKTSAEISLILS 205

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS+NTVN +   + ++     ++   +YA    ++
Sbjct: 206 ISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|221210086|ref|ZP_03583067.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|221170774|gb|EEE03240.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
          Length = 215

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++                 Y G S   LVR    Q   LD  + 
Sbjct: 4   VLIADDHTLVRDGLRHILQNATGFEVAGEA-----YDGPSTIALVRATPAQVLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +   +             L   +       +       + Y +     A 
Sbjct: 59  GRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +      +        A+              L+ RE +    I+ 
Sbjct: 111 LVGAVTKVASGGVYVSLAMAEQFAQSLNEPADTL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 163 GQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKLV 209


>gi|254464244|ref|ZP_05077655.1| two component transcriptional regulator, LuxR family
           [Rhodobacterales bacterium Y4I]
 gi|206685152|gb|EDZ45634.1| two component transcriptional regulator, LuxR family
           [Rhodobacterales bacterium Y4I]
          Length = 238

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +S     S+  A +           +              +    
Sbjct: 35  MRILLADDHDMVRETISAYLR-SEGGAEVALATDLPGAIEQ--------------ISDEG 79

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D +     +   K   +L                         
Sbjct: 80  PFDLVLLDYNMPGMMGLDGLSKALTANGGKGVAILSGSAPART--------AQEALDAGA 131

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +  D + E    + +                 L+
Sbjct: 132 IGFIPKTMGAQSLLNAVRFMSAGEIYVPVDLMREEAAASTHPLAKK------------LS 179

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +S+G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 180 PRELEVLNGLSKGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNRTQAALCAKEAGL 237


>gi|241664982|ref|YP_002983342.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240867009|gb|ACS64670.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 58/245 (23%), Gaps = 35/245 (14%)

Query: 1   MNFEIQ-QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           MN      V ++L  +       V            +       +       L       
Sbjct: 1   MNMHSPMPVKLLLVDDHPLVRDGVRVRLEAVPHFEVVGEAGDAEAALEAARTLA------ 54

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                         +D  +       L    A                L   +   L   
Sbjct: 55  ---------PDLALMDIGMRGMNGIALTEKFAEE--------FPEIAVLVLSMHDNLEYV 97

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     Y       + +   +  +                      A       V 
Sbjct: 98  RQVIRAGARGYVLKDAPASELVEAIDAVLAGRPFYSA-----------QLAMRMAEQAVM 146

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE + L  I++G  +  IA  LG+S  TV ++  ++ RK   + ++  + +
Sbjct: 147 PTPVEALTPRERDILDGIAKGYANKRIADELGLSVRTVESHRLNLKRKLGIEGQAELVKF 206

Query: 240 AVRNN 244
           AV   
Sbjct: 207 AVELG 211


>gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille]
 gi|151283114|gb|ABR91524.1| two-component response regulator [Janthinobacterium sp. Marseille]
          Length = 209

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 67/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       + HL +    +  +            +                  
Sbjct: 2   LRILMADDHALMREGLKHLFSVVGGIDVVAEASTGPQVFELLRRT--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L+  +   +             L   +   +           
Sbjct: 47  DVDLILLDMTMPGISGATLIHHIRSQKTAPN--------ILVLSMHDEVQFARRALDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D   +   +  +   GR I R    E+          F            L+
Sbjct: 99  SGYITKDTDPQTLIDAIHRVAEGGRFISRGLAEEML---------FDHGTRARPSHELLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +  G+  +EIA  L IS  TV+ +   +M K   +  S  I YA+ + ++
Sbjct: 150 TREYEIFQLLVHGRGVNEIADELSISNKTVSTHKTRLMEKMKCENVSQLIRYAIAHGML 208


>gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
 gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris
           trichoides DG6]
          Length = 203

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 54/192 (28%), Gaps = 19/192 (9%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G     L          +D  +                             L      
Sbjct: 30  ADGQQALDLCHQYAPDVILMDIAMPVMDGPTAT--------MHIRAAFPHIQVLVLTSLV 81

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                +         Y     +  ++ I +         I    L  +            
Sbjct: 82  DETMVVRAIRAGALGYLYKDVEADQLAIAIRNAMHGRATIDAQLLHVLT----------- 130

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  +  +LT RE E L  +  GKT+ +IA +L IS  TV  +++SI+ K     R+
Sbjct: 131 HQTDKAAQRPDLTNREREVLRLLVAGKTNHQIADLLKISPATVRIHVSSILAKLGVNNRT 190

Query: 235 GAIAYAVRNNIV 246
            A   AV++ ++
Sbjct: 191 EAAIIAVQHKLI 202


>gi|254974814|ref|ZP_05271286.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092202|ref|ZP_05321680.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313941|ref|ZP_05355524.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516621|ref|ZP_05384297.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649721|ref|ZP_05396623.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519831|ref|ZP_07406178.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 78/243 (32%), Gaps = 31/243 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +++     ++ + +  D L  +                    G       
Sbjct: 1   MNKIKVLIVDDEKLIRKGLNIILSSYDDLEIVGDASN---------------GYEALEFC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + +      +D  +         R +       Y + +          F+          
Sbjct: 46  KTNDVDIVLMDIRMKVCDGVLGTRLIKE-----YDSSIALL---ILTTFNDDEYIEDAMK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + Y         +  G+   F    ++ +         A       K+ +     D 
Sbjct: 98  FGASGYLLKDSSDEVLHEGIRSSFFGNIVLDKSV-------AEKIMYPQKTIEQKHISDM 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+  + +A +N
Sbjct: 151 YNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILGKLELRDRTQLVIFAFKN 210

Query: 244 NIV 246
            IV
Sbjct: 211 KIV 213


>gi|161505683|ref|YP_001572795.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867030|gb|ABX23653.1| hypothetical protein SARI_03859 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 217

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 61/225 (27%), Gaps = 30/225 (13%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KL 74
             RT  +  +    D L         +     +  + E  G+    L        Q    
Sbjct: 16  PIRTELMITVALIDDHLIVRSGFAQLLGMEPDLQVVAE-FGSGREALAGLPGRGVQVCIC 74

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +L+  +            +    +   V  +              + S  
Sbjct: 75  DISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKR 123

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +   G  +  D   ++                  G+   LT RE +  
Sbjct: 124 CSPDELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVA 167

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +++G    EIA  LG+S  TV+ + A+++ K            
Sbjct: 168 EKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAHR 212


>gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp.
           ADP1]
          Length = 246

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP--FDLVRCM 90
           L ++            +    + +     ++       +++L   V   +    D     
Sbjct: 16  LRQIRQASKIEDIFDVVVEFAQNIDFDRLIICSIAPHGKEELIDEVFFVYGNWTDRTNIE 75

Query: 91  ALSEKDKYYNVLQRPTELFCPVFH----------TLPENIT--PPAGMDNRYCSLTFDVA 138
             ++  +   + +   +   P F                I      G ++      F   
Sbjct: 76  ERNKYLRNCPITRHIFDYDEPFFWTKTFNKNNSKETYRVIKNISERGEESGVQVPIFGRT 135

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTW 196
            +   +     K   +  D  + +  +        +S        ++  LT RE E L W
Sbjct: 136 GLEGAISFAG-KLSDLGADFRFILQSVCVTAFREIQSKRSLNLLRENSVLTQREKEILKW 194

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            + G+   EIA IL IS  TV N++ SI +K   K+   AIA A+   
Sbjct: 195 TAVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASALLKG 242


>gi|332666175|ref|YP_004448963.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334989|gb|AEE52090.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 221

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     +  L  +++ ++ +            +                  
Sbjct: 7   IKLLLVDDHQVLIDGIKALLEKAEGISIVHQALNGKGALETLEQ-------------HHA 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F++ + +     DK          L   +               
Sbjct: 54  EIDLVLLDINMPDMNGFEVCQEIKKRFPDK--------KVLSLTMHSEAGFITKMVKAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    +   ++    +         M            ++T
Sbjct: 106 DGYVLKNAGKDELVTAIRSIQQGEKYFSKEVTNSL------LDGMQSKKPSRSQYIPKIT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I +   +DEIA  L IS  TV ++  S++RK   K  +G +  A   N++
Sbjct: 160 RREKEILRLIIDECNTDEIAAKLFISDTTVISHRKSLLRKLNVKNTAGLVRVAYEFNLL 218


>gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 229

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 12/232 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             +  +    D           +     M  + E   GA+   L R        LD  + 
Sbjct: 4   MTIIRVLIADDQEMVRGAFRMILDSQPDMEVVAEAADGATAVELARSLRPDVCLLDIRMP 63

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +A         V Q    +    F                +         
Sbjct: 64  ELDGLEATRLLAG------PAVPQPFKVIVATTFDLDEYVYRALRNGACGFLLKDGSPTL 117

Query: 140 IRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANM----FKSYDVHWGKDFELTGREVECL 194
           +   +      G +I        +  +A+ + +        +         LT RE++ +
Sbjct: 118 LTEAVRAAAAGGSLISPTITVRLLRHMASPEPDRNGRPAAEHRAPARLSEPLTERELDVI 177

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G+T++E+A  L ++ +TV  ++ ++ RK + + R    A+A  N +V
Sbjct: 178 RRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGLV 229


>gi|194366116|ref|YP_002028726.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348920|gb|ACF52043.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 217

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 27/230 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
                 V   P   D LA ++     +             G       +        +D 
Sbjct: 7   PIGVLVVDDHPLLRDGLAALLGAQPDLRLLGEA-----ADGEEAIACYQRLQPDVVLMDL 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + +  +   +         R   +    +      +       + Y      
Sbjct: 62  QMPRLDGVEAIVRIRALD--------PRARIIVLTTYRGDVRAVRALQAGASAYLLKDML 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++    R  +   +     +AA+                 L+ RE E L  
Sbjct: 114 RHELVDTIRMVAGGRRAPIPPAVA--ASIAAHVVED------------RLSPRETEVLRH 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++  I   + IS  TV  ++ S+M K     R+ A+  A+R  I+
Sbjct: 160 VAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRRGII 209


>gi|116672689|ref|YP_833622.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116612798|gb|ABK05522.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 218

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWP 83
            +    D       L   +S    +    E    +  L     L    +  D ++     
Sbjct: 5   RILLVDDHPVVRAGLRAMLSDFEGITVAAEAGDGAAALAQLARLRTLGEPVDVVLMDLQM 64

Query: 84  FDLVRCMALSE-KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              +  +  ++        +  P  L    + +  + +       + Y         IR 
Sbjct: 65  GAGMDGVTATQKIKAGEAGIPAPPVLILTTYDSDADILAAVEAGASGYMLKDAPPEHIRQ 124

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            ++     G  +  +    +                    +  L+ RE++ L  ++ G  
Sbjct: 125 AVLSAAAGGTALAPEVAARL-------------VGRIRNPEPALSAREIQLLQLLATGLP 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IA  L IS  TV  ++  I  K     R+ AI+ A +  I+
Sbjct: 172 NRAIARRLFISEATVKTHLVHIYGKLGVDNRTAAISVATQRRII 215


>gi|298244378|ref|ZP_06968184.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551859|gb|EFH85724.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 212

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +       + +      V     +  L               
Sbjct: 2   IRLLIIDDHEMVREGLKAILMTEPDFSIVGDAATAVQALELIERL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +                 +    F              
Sbjct: 47  QPDIALLDVRLPDSSGIEVCRTVTER--------FPETAVIILTTFTDETLVAECIQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   ++  +  +      I       +               +       L+
Sbjct: 99  RGYIVKDIERFDLKRSIRAVARGEGAIDPKAAAVLMTQLRRAPQTNPELSLES-----LS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++  L ++++G +S EIA  L +S NT+  Y+  I+ +   K R+ A+  AV++  +
Sbjct: 154 SQQLVILRFVAQGLSSREIAKKLYLSENTIKGYVQEILHRLNVKNRTEAVMVAVKHGWL 212


>gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 520

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 3/141 (2%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +    F          +   + +         +   +  +     ++       +   
Sbjct: 371 RVVILTTFDLDRYVYAALSAGASGFLLKDVTPEHLASAVRTVRTGDALLAPAITRRLVQ- 429

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A               LT RE+E L  ++ G ++ E+A  L ++  TV  ++A ++
Sbjct: 430 --RFARHGGDTADLHRDLASLTPRELEVLGLLARGLSNAELAARLHLAETTVKTHVARVL 487

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K   + R  A+  A    +V
Sbjct: 488 AKLGLRDRVQAVIVAYETGLV 508


>gi|194431335|ref|ZP_03063628.1| transcriptional regulatory protein UhpA [Shigella dysenteriae 1012]
 gi|194420790|gb|EDX36866.1| transcriptional regulatory protein UhpA [Shigella dysenteriae 1012]
 gi|320180011|gb|EFW54953.1| Transcriptional regulatory protein UhpA [Shigella boydii ATCC 9905]
 gi|332084474|gb|EGI89669.1| transcriptional regulatory protein uhpA [Shigella dysenteriae
           155-74]
 gi|332084858|gb|EGI90041.1| transcriptional regulatory protein uhpA [Shigella boydii 5216-82]
          Length = 196

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQGPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
 gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           F]
          Length = 247

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 28/200 (14%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITP 122
           D  + + +P +       +       V+      F P                    ++ 
Sbjct: 43  DIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDENITVISELKLSKIFTLSK 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRI--ILRDRLWE---IGLLAAYQANMFKSYD 177
              + N +  +  D       L L+     +  +    L +   + +L         +  
Sbjct: 103 KYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTLS 162

Query: 178 VH-----------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                              L+ RE E L W S GKT  EIA+I  I+  TV  +I ++++
Sbjct: 163 QRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVK 222

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K        AI   V   I+
Sbjct: 223 KLGVINAKQAIGLGVELEII 242


>gi|152997248|ref|YP_001342083.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150838172|gb|ABR72148.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 213

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +  +  +S +                            + G    +  +  
Sbjct: 2   LKVLIVDDHDVVSQGISRVLQ---------------DVKGVEVVGVVHSGEEAIIQSKIL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +         + +          +L +   +           +       
Sbjct: 47  LPDIILMDVHMPGIGGLGATKEIKR--------ILPKTKIIALSALDDNLYPVKLLEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   + + +   + ++      I +    ++ L          S D       +L+
Sbjct: 99  SGYLTKGTNTSELLEAIQMVSKGEHYISKSIAQKMAL-------SKFSIDGQGSPLGQLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I + K S+EIA  L +S  TV+ Y   I  K   ++    I  AVR N++
Sbjct: 152 DRELQVAQMIVDCKKSNEIAEHLCVSPKTVSTYRTRIFTKLNIESDVELIRLAVRYNVL 210


>gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10]
 gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola]
 gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis
           FV-1]
 gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           YPIII]
 gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10]
 gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis]
 gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua]
 gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92]
 gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis
           CA88-4125]
 gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola]
 gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           YPIII]
 gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516]
 gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides
           A]
 gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004]
 gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038]
 gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27]
 gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003]
 gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 247

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 28/200 (14%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITP 122
           D  + + +P +       +       V+      F P                    ++ 
Sbjct: 43  DIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDENITVLSELKLSKIFTLSK 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRI--ILRDRLWE---IGLLAAYQANMFKSYD 177
              + N +  +  D       L L+     +  +    L +   + +L         +  
Sbjct: 103 KYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQMLLIETHEKMLTLS 162

Query: 178 VH-----------WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                              L+ RE E L W S GKT  EIA+I  I+  TV  +I ++++
Sbjct: 163 QRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAIITNITPRTVKYHIGNVVK 222

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K        AI   V   I+
Sbjct: 223 KLGVINAKQAIGLGVELEII 242


>gi|332663436|ref|YP_004446224.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332250|gb|AEE49351.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 208

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  +DE      ++L    +  + +           +++A               D
Sbjct: 5   INVTLIEDDETIRDSYAYLIGGMEGYSVISTYASYEDAAKKLHA---------------D 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +          +L     +   V+              
Sbjct: 50  APDVILLDIELPGLNGIDALLKIKK--------ILPNTPIIMLTVYENEHTIFEALVNGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +      ++   +  +   G  +  +    +                H  ++  LT
Sbjct: 102 SGYLTKDASPQKMVDAIKEVMEGGGAMSANVARLVI------------KSFHRNQNSPLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  IS GK+   IA  + I   TV ++I +I  K    +++ AI  A     +
Sbjct: 150 RRETEILEQISLGKSRKRIAEEMFIDMETVKSHIKNIYLKLDVHSKADAIKLAKDKRFI 208


>gi|161520802|ref|YP_001584229.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189353016|ref|YP_001948643.1| two-component system invasion response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221196454|ref|ZP_03569501.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221203125|ref|ZP_03576144.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|160344852|gb|ABX17937.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189337038|dbj|BAG46107.1| two-component system invasion response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221177059|gb|EEE09487.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221183008|gb|EEE15408.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 215

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++                   G S   LVR    Q   LD  + 
Sbjct: 4   VLIADDHTLVRDGLRHILQNATGFEVAGEA-----CDGPSTIALVRATPAQVLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +   +             L   +       +       + Y +     A 
Sbjct: 59  GRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +      +        A+              L+ RE +    I+ 
Sbjct: 111 LVGAVTKVASGGVYVSLAMAEQFAQSLNEPADTL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 163 GQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKLV 209


>gi|126443832|ref|YP_001062225.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126223323|gb|ABN86828.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
          Length = 215

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +          E    A+   LVR    Q   LD  +      
Sbjct: 4   VLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRNGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L++ +   +             L   +       +       + Y +     + +   +
Sbjct: 64  ELIKQIKEEK--------PALRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +               A               L+ RE +    I+ G+T  
Sbjct: 116 TKVASGGVYVSLAMAERFAQSLNEPAETL--------PHHRLSDREFDVFRRIASGQTLT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  TV+ Y   I++K      +  + YA+R+ ++
Sbjct: 168 QIADELCVSAKTVSTYKTRILQKMQMPHEAALVRYALRHKLI 209


>gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 210

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 65/239 (27%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +      L  +                    G    +     
Sbjct: 2   IRVLLVDDHPVVREGIRGMLAAEADLTVVGEAAS---------------GPEAVVRTAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    ++                L    + T  + +       
Sbjct: 47  EPDVVLMDLRMPGGDGVEATGRISAER--------PGAHVLVLTTYDTDADILRAVEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +        ++        G LA       +           L+
Sbjct: 99  TGYLLKDTPRAELAEAVRAAARGETVLT-------GRLAGRLFTGMRRRG---EPAAVLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L   SEG+T+  I   L IS  TV  ++  +  K     R+ A++ A+R  ++
Sbjct: 149 PREVEVLRLASEGRTNAAIGRALHISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGLL 207


>gi|167624270|ref|YP_001674564.1| response regulator [Shewanella halifaxensis HAW-EB4]
 gi|167354292|gb|ABZ76905.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 214

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRILEDERGIKVVGEAGD---------------GETAVQWCRKN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 47  EADVILMDMNMPGIGGLEATRKILRFQ--------AHAKIIVLTIHTEDPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L         +           L+
Sbjct: 99  SGYLTKGATSPEVLQAIRQVAHGQRYLSPEIAQQMAL--------SQFNQSEENPFKSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+   EI+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMLMITNGEKVSEISEQLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRYKML 209


>gi|157960657|ref|YP_001500691.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157845657|gb|ABV86156.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 209

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              +   P     + +++  D   +      +     G      V  +      LD  + 
Sbjct: 7   VLVIDDHPLLRRGICQLVTSDSDFTLFGEAGS-----GLDALSAVTDNEPDIILLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  +                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNALRQEGVT--------SRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I       +        +   S          LT RE+E L  ++E
Sbjct: 114 LLEMLKNAMLGHRVISDTVQEYL--------SELNSSVNEQEWLENLTPRELEILQHLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+++  +A  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|15804265|ref|NP_290304.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 EDL933]
 gi|15833860|ref|NP_312633.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. Sakai]
 gi|16131539|ref|NP_418125.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. MG1655]
 gi|26250413|ref|NP_756453.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           CFT073]
 gi|30064982|ref|NP_839153.1| DNA-binding transcriptional activator UhpA [Shigella flexneri 2a
           str. 2457T]
 gi|56480419|ref|NP_709525.2| DNA-binding transcriptional activator UhpA [Shigella flexneri 2a
           str. 301]
 gi|74313989|ref|YP_312408.1| DNA-binding transcriptional activator UhpA [Shigella sonnei Ss046]
 gi|82546057|ref|YP_410004.1| DNA-binding transcriptional activator UhpA [Shigella boydii Sb227]
 gi|89110343|ref|AP_004123.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. W3110]
 gi|110644017|ref|YP_671747.1| DNA-binding transcriptional activator UhpA [Escherichia coli 536]
 gi|110807635|ref|YP_691155.1| DNA-binding transcriptional activator UhpA [Shigella flexneri 5
           str. 8401]
 gi|157156118|ref|YP_001465154.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           E24377A]
 gi|157163151|ref|YP_001460469.1| DNA-binding transcriptional activator UhpA [Escherichia coli HS]
 gi|168748618|ref|ZP_02773640.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|168753555|ref|ZP_02778562.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|168759852|ref|ZP_02784859.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|168772299|ref|ZP_02797306.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|168779887|ref|ZP_02804894.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|168785620|ref|ZP_02810627.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|168798701|ref|ZP_02823708.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|170018090|ref|YP_001723044.1| DNA-binding transcriptional activator UhpA [Escherichia coli ATCC
           8739]
 gi|170083176|ref|YP_001732496.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. DH10B]
 gi|170684214|ref|YP_001745997.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           SMS-3-5]
 gi|187730907|ref|YP_001882486.1| DNA-binding transcriptional activator UhpA [Shigella boydii CDC
           3083-94]
 gi|188493334|ref|ZP_03000604.1| transcriptional regulatory protein UhpA [Escherichia coli 53638]
 gi|191170357|ref|ZP_03031910.1| transcriptional regulatory protein UhpA [Escherichia coli F11]
 gi|193063810|ref|ZP_03044897.1| transcriptional regulatory protein UhpA [Escherichia coli E22]
 gi|194435875|ref|ZP_03067978.1| transcriptional regulatory protein UhpA [Escherichia coli 101-1]
 gi|195936288|ref|ZP_03081670.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808592|ref|ZP_03250929.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208813985|ref|ZP_03255314.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208819791|ref|ZP_03260111.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209398144|ref|YP_002273200.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|209921144|ref|YP_002295228.1| DNA-binding transcriptional activator UhpA [Escherichia coli SE11]
 gi|217324810|ref|ZP_03440894.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|218551201|ref|YP_002384992.1| DNA-binding transcriptional activator UhpA [Escherichia fergusonii
           ATCC 35469]
 gi|218556234|ref|YP_002389147.1| DNA-binding transcriptional activator UhpA [Escherichia coli IAI1]
 gi|218697391|ref|YP_002405058.1| DNA-binding transcriptional activator UhpA [Escherichia coli 55989]
 gi|218702513|ref|YP_002410142.1| DNA-binding transcriptional activator UhpA [Escherichia coli IAI39]
 gi|227883891|ref|ZP_04001696.1| response regulator [Escherichia coli 83972]
 gi|238902760|ref|YP_002928556.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli BW2952]
 gi|253771468|ref|YP_003034299.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038887|ref|ZP_04872939.1| transcriptional regulatory protein UhpA [Escherichia sp. 1_1_43]
 gi|254163622|ref|YP_003046730.1| DNA-binding transcriptional activator UhpA [Escherichia coli B str.
           REL606]
 gi|254795677|ref|YP_003080514.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. TW14359]
 gi|256025599|ref|ZP_05439464.1| DNA-binding transcriptional activator UhpA [Escherichia sp.
           4_1_40B]
 gi|260846545|ref|YP_003224323.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O103:H2 str. 12009]
 gi|260857919|ref|YP_003231810.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O26:H11 str. 11368]
 gi|260870399|ref|YP_003236801.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O111:H- str. 11128]
 gi|261225825|ref|ZP_05940106.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258870|ref|ZP_05951403.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O157:H7 str. FRIK966]
 gi|291285092|ref|YP_003501910.1| transcriptional regulatory protein UhpA [Escherichia coli O55:H7
           str. CB9615]
 gi|293413120|ref|ZP_06655786.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417148|ref|ZP_06659775.1| two-component system [Escherichia coli B185]
 gi|293463994|ref|ZP_06664408.1| two-component system [Escherichia coli B088]
 gi|297522028|ref|ZP_06940414.1| DNA-binding transcriptional activator UhpA [Escherichia coli OP50]
 gi|300984793|ref|ZP_07177116.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300988789|ref|ZP_07178831.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301028450|ref|ZP_07191696.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301047486|ref|ZP_07194563.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|301644338|ref|ZP_07244339.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306815974|ref|ZP_07450112.1| DNA-binding transcriptional activator UhpA [Escherichia coli NC101]
 gi|307140369|ref|ZP_07499725.1| DNA-binding transcriptional activator UhpA [Escherichia coli H736]
 gi|307313261|ref|ZP_07592886.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|312972039|ref|ZP_07786213.1| transcriptional regulatory protein uhpA [Escherichia coli 1827-70]
 gi|331649497|ref|ZP_08350583.1| transcriptional regulatory protein UhpA [Escherichia coli M605]
 gi|331655325|ref|ZP_08356324.1| transcriptional regulatory protein UhpA [Escherichia coli M718]
 gi|331660015|ref|ZP_08360953.1| transcriptional regulatory protein UhpA [Escherichia coli TA206]
 gi|331670512|ref|ZP_08371351.1| transcriptional regulatory protein UhpA [Escherichia coli TA271]
 gi|331675164|ref|ZP_08375917.1| transcriptional regulatory protein UhpA [Escherichia coli TA280]
 gi|331685397|ref|ZP_08385983.1| transcriptional regulatory protein UhpA [Escherichia coli H299]
 gi|84029410|sp|P0AGA8|UHPA_ECO57 RecName: Full=Transcriptional regulatory protein uhpA
 gi|84029411|sp|P0AGA7|UHPA_ECOL6 RecName: Full=Transcriptional regulatory protein uhpA
 gi|84029412|sp|P0AGA6|UHPA_ECOLI RecName: Full=Transcriptional regulatory protein uhpA
 gi|84029413|sp|P0AGA9|UHPA_SHIFL RecName: Full=Transcriptional regulatory protein uhpA
 gi|12518501|gb|AAG58868.1|AE005598_12 response regulator, positive activator of uhpT transcription
           (sensor, uhpB) [Escherichia coli O157:H7 str. EDL933]
 gi|26110843|gb|AAN83027.1|AE016769_142 Transcriptional Regulatory protein uhpA [Escherichia coli CFT073]
 gi|148112|gb|AAA24720.1| UhpA protein [Escherichia coli]
 gi|148117|gb|AAA24724.1| hexosephosphate utilization protein [Escherichia coli]
 gi|290518|gb|AAA62021.1| hexosephosphate utilization protein [Escherichia coli]
 gi|1790102|gb|AAC76692.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. MG1655]
 gi|13364081|dbj|BAB38029.1| response regulator UhpA [Escherichia coli O157:H7 str. Sakai]
 gi|30043243|gb|AAP18964.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|56383970|gb|AAN45232.2| response regulator [Shigella flexneri 2a str. 301]
 gi|73857466|gb|AAZ90173.1| response regulator, positive activator of uhpT transcription
           (sensor, uhpB) [Shigella sonnei Ss046]
 gi|81247468|gb|ABB68176.1| UhpA [Shigella boydii Sb227]
 gi|85676374|dbj|BAE77624.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K12 substr. W3110]
 gi|110345609|gb|ABG71846.1| transcriptional regulatory protein UhpA [Escherichia coli 536]
 gi|110617183|gb|ABF05850.1| Transcriptional Regulatory protein uhpA [Shigella flexneri 5 str.
           8401]
 gi|157068831|gb|ABV08086.1| transcriptional regulatory protein UhpA [Escherichia coli HS]
 gi|157078148|gb|ABV17856.1| transcriptional regulatory protein UhpA [Escherichia coli E24377A]
 gi|169753018|gb|ACA75717.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|169891011|gb|ACB04718.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli str. K-12 substr. DH10B]
 gi|170521932|gb|ACB20110.1| transcriptional regulatory protein UhpA [Escherichia coli SMS-3-5]
 gi|187427899|gb|ACD07173.1| transcriptional regulatory protein UhpA [Shigella boydii CDC
           3083-94]
 gi|187771641|gb|EDU35485.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|188016946|gb|EDU55068.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|188488533|gb|EDU63636.1| transcriptional regulatory protein UhpA [Escherichia coli 53638]
 gi|189002329|gb|EDU71315.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|189358985|gb|EDU77404.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|189369800|gb|EDU88216.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|189374507|gb|EDU92923.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|189378793|gb|EDU97209.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|190909165|gb|EDV68751.1| transcriptional regulatory protein UhpA [Escherichia coli F11]
 gi|192930525|gb|EDV83132.1| transcriptional regulatory protein UhpA [Escherichia coli E22]
 gi|194425418|gb|EDX41402.1| transcriptional regulatory protein UhpA [Escherichia coli 101-1]
 gi|208728393|gb|EDZ77994.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208735262|gb|EDZ83949.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208739914|gb|EDZ87596.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209159544|gb|ACI36977.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|209754358|gb|ACI75486.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754360|gb|ACI75487.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754362|gb|ACI75488.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754364|gb|ACI75489.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209754366|gb|ACI75490.1| hypothetical protein ECs4606 [Escherichia coli]
 gi|209914403|dbj|BAG79477.1| two-component response regulator [Escherichia coli SE11]
 gi|217321031|gb|EEC29455.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|218354123|emb|CAV00698.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli 55989]
 gi|218358742|emb|CAQ91400.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia fergusonii ATCC 35469]
 gi|218363002|emb|CAR00640.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli IAI1]
 gi|218372499|emb|CAR20375.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli IAI39]
 gi|222035387|emb|CAP78132.1| Transcriptional regulatory protein uhpA [Escherichia coli LF82]
 gi|226838852|gb|EEH70879.1| transcriptional regulatory protein UhpA [Escherichia sp. 1_1_43]
 gi|227839169|gb|EEJ49635.1| response regulator [Escherichia coli 83972]
 gi|238860874|gb|ACR62872.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli BW2952]
 gi|242379208|emb|CAQ34012.1| UhpA transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253322512|gb|ACT27114.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975523|gb|ACT41194.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli B str. REL606]
 gi|253979679|gb|ACT45349.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli BL21(DE3)]
 gi|254595077|gb|ACT74438.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli O157:H7 str. TW14359]
 gi|257756568|dbj|BAI28070.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O26:H11 str. 11368]
 gi|257761692|dbj|BAI33189.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O103:H2 str. 12009]
 gi|257766755|dbj|BAI38250.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O111:H- str. 11128]
 gi|260447310|gb|ACX37732.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|281180726|dbj|BAI57056.1| two-component response regulator [Escherichia coli SE15]
 gi|281603100|gb|ADA76084.1| Transcriptional regulatory protein uhpA [Shigella flexneri 2002017]
 gi|284923751|emb|CBG36848.1| two-component system response regulator [Escherichia coli 042]
 gi|290764965|gb|ADD58926.1| transcriptional regulatory protein UhpA [Escherichia coli O55:H7
           str. CB9615]
 gi|291321626|gb|EFE61062.1| two-component system [Escherichia coli B088]
 gi|291431179|gb|EFF04172.1| two-component system [Escherichia coli B185]
 gi|291468253|gb|EFF10748.1| conserved hypothetical protein [Escherichia coli B354]
 gi|299878561|gb|EFI86772.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300300601|gb|EFJ56986.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300305857|gb|EFJ60377.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300408343|gb|EFJ91881.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301077279|gb|EFK92085.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|305850370|gb|EFM50827.1| DNA-binding transcriptional activator UhpA [Escherichia coli NC101]
 gi|306906944|gb|EFN37453.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|307555813|gb|ADN48588.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli ABU 83972]
 gi|309704120|emb|CBJ03467.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310334416|gb|EFQ00621.1| transcriptional regulatory protein uhpA [Escherichia coli 1827-70]
 gi|312948240|gb|ADR29067.1| DNA-binding transcriptional activator UhpA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313647672|gb|EFS12120.1| transcriptional regulatory protein uhpA [Shigella flexneri 2a str.
           2457T]
 gi|315062977|gb|ADT77304.1| DNA-binding response regulator in two-component regulatory system
           with uhpB [Escherichia coli W]
 gi|315138251|dbj|BAJ45410.1| transcriptional regulatory protein UhpA [Escherichia coli DH1]
 gi|315254644|gb|EFU34612.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315292893|gb|EFU52245.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296912|gb|EFU56199.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|315618626|gb|EFU99212.1| transcriptional regulatory protein uhpA [Escherichia coli 3431]
 gi|320185558|gb|EFW60324.1| Transcriptional regulatory protein UhpA [Shigella flexneri CDC
           796-83]
 gi|320191227|gb|EFW65877.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC1212]
 gi|320193778|gb|EFW68411.1| Transcriptional regulatory protein UhpA [Escherichia coli
           WV_060327]
 gi|320639396|gb|EFX09011.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. G5101]
 gi|320644841|gb|EFX13877.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H- str. 493-89]
 gi|320650105|gb|EFX18601.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H- str. H 2687]
 gi|320655452|gb|EFX23387.1| DNA-binding transcriptional activator UhpA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661078|gb|EFX28514.1| DNA-binding transcriptional activator UhpA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666203|gb|EFX33209.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323164723|gb|EFZ50518.1| transcriptional regulatory protein uhpA [Shigella sonnei 53G]
 gi|323173283|gb|EFZ58912.1| transcriptional regulatory protein uhpA [Escherichia coli LT-68]
 gi|323177678|gb|EFZ63262.1| transcriptional regulatory protein uhpA [Escherichia coli 1180]
 gi|323182462|gb|EFZ67866.1| transcriptional regulatory protein uhpA [Escherichia coli 1357]
 gi|323376430|gb|ADX48698.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323934785|gb|EGB31167.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939146|gb|EGB35360.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944138|gb|EGB40218.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323959735|gb|EGB55385.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323971147|gb|EGB66393.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324008070|gb|EGB77289.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324012667|gb|EGB81886.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324111568|gb|EGC05549.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324115979|gb|EGC09905.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325499479|gb|EGC97338.1| transcriptional regulatory protein UhpA [Escherichia fergusonii
           ECD227]
 gi|326337278|gb|EGD61113.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1044]
 gi|326341650|gb|EGD65439.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1125]
 gi|331041995|gb|EGI14139.1| transcriptional regulatory protein UhpA [Escherichia coli M605]
 gi|331047340|gb|EGI19418.1| transcriptional regulatory protein UhpA [Escherichia coli M718]
 gi|331053230|gb|EGI25263.1| transcriptional regulatory protein UhpA [Escherichia coli TA206]
 gi|331062574|gb|EGI34494.1| transcriptional regulatory protein UhpA [Escherichia coli TA271]
 gi|331067609|gb|EGI39011.1| transcriptional regulatory protein UhpA [Escherichia coli TA280]
 gi|331077768|gb|EGI48980.1| transcriptional regulatory protein UhpA [Escherichia coli H299]
 gi|332089563|gb|EGI94667.1| transcriptional regulatory protein uhpA [Shigella boydii 3594-74]
 gi|332345659|gb|AEE58993.1| transcriptional regulatory protein UhpA [Escherichia coli UMNK88]
 gi|332750484|gb|EGJ80893.1| transcriptional regulatory protein uhpA [Shigella flexneri K-671]
 gi|332750657|gb|EGJ81065.1| transcriptional regulatory protein uhpA [Shigella flexneri 4343-70]
 gi|332751700|gb|EGJ82098.1| transcriptional regulatory protein uhpA [Shigella flexneri 2747-71]
 gi|332764035|gb|EGJ94272.1| uhpA transcriptional activator [Shigella flexneri 2930-71]
 gi|332996079|gb|EGK15706.1| transcriptional regulatory protein uhpA [Shigella flexneri VA-6]
 gi|332997128|gb|EGK16744.1| transcriptional regulatory protein uhpA [Shigella flexneri K-218]
 gi|332997703|gb|EGK17314.1| transcriptional regulatory protein uhpA [Shigella flexneri K-272]
 gi|333013233|gb|EGK32606.1| transcriptional regulatory protein uhpA [Shigella flexneri K-304]
 gi|333013625|gb|EGK32990.1| transcriptional regulatory protein uhpA [Shigella flexneri K-227]
          Length = 196

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|163788538|ref|ZP_02182983.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
 gi|159875775|gb|EDP69834.1| DNA-binding response regulator [Flavobacteriales bacterium ALC-1]
          Length = 207

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 69/233 (29%), Gaps = 30/233 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMR---MYALTEYVGASHFLLVRWDLFQEQK 73
           + +   +      SD  A +I                   E +   +  +          
Sbjct: 2   KHKVVIIEDNIPLSDAFAEVINTTNNFQVINSYDNCEEAIERLKFDNASIF--------L 53

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  + +          +  +   +   V+              + Y + 
Sbjct: 54  MDIELPGINGVEGTKQIKK--------IFPKANIIMVTVYENSEVVFDALCAGASGYLTK 105

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           + +   +   L      G  +               A M            EL+ RE + 
Sbjct: 106 SLNPEELIDALNECIDGGAPMS-----------IKIAKMVVGSFQKKPSKIELSKREKDV 154

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +SEG + D IA  L IS+NT+  ++ +I  K    +   A+  A + N++
Sbjct: 155 LLQLSEGNSYDSIAENLFISKNTIKFHLKNIYIKLQVNSNIEAVQKANKENLL 207


>gi|330468305|ref|YP_004406048.1| NarL family two-component response regulator [Verrucosispora maris
           AB-18-032]
 gi|328811276|gb|AEB45448.1| NarL family two-component response regulator [Verrucosispora maris
           AB-18-032]
          Length = 219

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 73/235 (31%), Gaps = 20/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQ 70
           ++RE  +R   V+      D     + +   +   + +  + E V     L LV   L  
Sbjct: 1   MSREQPERPIRVA---VVDDHPVFRLGMTALLGTLIGIECVGEAVDVDSALDLVAGHLPD 57

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      +  R +                 L   +F              + Y
Sbjct: 58  VVLMDLHLGDRSGVEATRLIRARH--------PEVAVLVVTMFDDDDSLFGALRAGASGY 109

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                   ++  G+  +     ++  +                           +LT RE
Sbjct: 110 LLKGAAPQQVERGVRAVANGELLLGPEIGARAVGFFVR--------GAAPVPFPQLTDRE 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E L  +++G  +  IA  L +S  TV N++++I+ K     R+ AI  A    +
Sbjct: 162 REILDHVAQGLDNATIAHRLALSPKTVRNHLSNILVKIGVGDRAQAIVRAREQGL 216


>gi|302524687|ref|ZP_07277029.1| predicted protein [Streptomyces sp. AA4]
 gi|302433582|gb|EFL05398.1| predicted protein [Streptomyces sp. AA4]
          Length = 499

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 27/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L  + E   S +  +  R D    +            + A  E            
Sbjct: 22  ETRVLLVDDQELVRSGLRLILRRRDGFVVVGECSDGDEVPAALEAAGE------------ 69

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  S          RP  L    F             
Sbjct: 70  --VDVVVMDLRMKRVDGIEATRRLRASG--------PRPPVLALTTFDDDELLAGVLRAG 119

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +      +       +       A+              L
Sbjct: 120 AVGYVLKDSPAEDLIRAVRAVAMGEAWLDPAVTGRVLTTYREAASA-----RSVMPAGVL 174

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + LT ++ G T  EIA  LGIS  TV  +   +  K   + R+ AI YA  + +V
Sbjct: 175 TPRESDVLTAVARGLTDAEIAGTLGISTTTVEAHYERVCAKLRLRDRAAAIVYAFDHGLV 234


>gi|256423275|ref|YP_003123928.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038183|gb|ACU61727.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 213

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 58/236 (24%), Gaps = 23/236 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L+   +   + V   P   +    ++                  +G      ++     
Sbjct: 1   MLHNNHKISIAIVDDHPIVIEGFRSLLESSPLYEIAGCFTTGAGCMGF-----LQQHKAD 55

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +           +                 +     +               Y
Sbjct: 56  IVLLDITLPDGNGVHFCAVINE--------FYPDTMVVALSNLNERSIISQLFKNGAKGY 107

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   L  ++     +  +    +                      ELT RE
Sbjct: 108 LLKNISAKELLDALNTVWEGNIAMSPEVKEIMQQ----------PDLNTLQTIPELTKRE 157

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  ++EG+ S  IA  L IS  TV  + A+++ K         +  A    ++
Sbjct: 158 KQILQLLAEGRKSAAIAEELFISPLTVKTHRATLLHKFQVSNIVTLVNRAKETGLI 213


>gi|331699447|ref|YP_004335686.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954136|gb|AEA27833.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 211

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            ++++  + E   +    +      +  +           R   L               
Sbjct: 2   TSVLVADDQEMVRTGFRLILGAEPGIEVVGEAGTGAEAVERARRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V+          F              
Sbjct: 47  RPDVVLMDIRMPELDGLEATRALTADPDPPRIVVV--------TTFDLDEYVYGALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +        ++       +            +          L+
Sbjct: 99  CGFLLKDAGPRLLVEAVRAAAAGDALVSPSVTVRL-------LRHLTTPAPRPTLPEPLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+T+ EIA  L +S +TV  ++ ++  K   + R    A+A  + +V
Sbjct: 152 PREIDVVRAVARGRTNAEIAADLFVSLSTVKTHLTNVQAKLGARNRVEVAAWAWEHGLV 210


>gi|228919418|ref|ZP_04082785.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840249|gb|EEM85523.1| Two component transcriptional regulator, LuxR [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 217

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 26/233 (11%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+  + +     +  + +  + +  +            +                    
Sbjct: 3   VVIVDDQQIVREGLKMVLSLHEEINIVGEASNGEELLELL---------------SHTYA 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +   +D  +         + +        Y  ++    +    F+      T      + 
Sbjct: 48  EIILMDIRMPIMDGIVATKLVKEK-----YPEIK---VIILTTFNDSEYIFTGLKNGADG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLL--AAYQANMFKSYDVHWGKDFEL 186
           Y     D   I   +   F    ++     L  +  L  A Y+  +   ++ +      L
Sbjct: 100 YILKDSDSQEIIESIKTAFEGNILLNPKITLKVVKALNSANYKETVKAEFNENKQPSNLL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE+E    I EGK++  I+  L I+  TV NY++ I+ K     R+    Y
Sbjct: 160 TPRELEVAKHIMEGKSNKAISKELFITEGTVKNYVSRILEKLELNNRTELTLY 212


>gi|85059148|ref|YP_454850.1| response regulator [Sodalis glossinidius str. 'morsitans']
 gi|84779668|dbj|BAE74445.1| transcription regulator [Sodalis glossinidius str. 'morsitans']
          Length = 218

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +         +                  + G       R +
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGFKVVGEA---------------HCGEDAVKWCRNN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +       +   ++    +   ++   P          
Sbjct: 47  CVNVVLMDMNMPGIGGLEATRKIVR-----FSPDIK---VIMLTIYTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   +  +    R I  D   ++ L            +      FE L
Sbjct: 99  AGYLSKAAAPREVICAIRAVNAGKRYIASDIAQQMAL---------SQLEPQAETPFECL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I+ G+   +I+  L +S  TVN+Y   I  K            A+R+ +
Sbjct: 150 SERELQIMLMITRGQKVTDISEQLNLSPKTVNSYRYRIFSKLNISGDVELTHLAIRHGL 208


>gi|296169094|ref|ZP_06850753.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896214|gb|EFG75876.1| LuxR family DNA-binding response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 223

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     ++ L      L  +           R+ AL               
Sbjct: 2   VKVFLVDDHEVVRRGLADLLASDPELEIVGEAGSVSEAKARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRDLVSDHPDLRC--------LMLTSFTSDEAMLEAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +           +           LT
Sbjct: 99  SGYVVKDIKGMELAHAIKEVGAGKSLLDNRAAAAL-------MAKLRGAAEREDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A + 
Sbjct: 152 EQERTLLGLLSEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVFASKL 207


>gi|91783961|ref|YP_559167.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91687915|gb|ABE31115.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 216

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +       + H+   +     +   D +               AS   L+R  
Sbjct: 2   TRVLIADDHALVRDGLRHILKGASGFEVVGEADDS---------------ASTVALIRER 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +             L   +       +       
Sbjct: 47  AADVLVLDLSMPGRNGVELIKQIKEEKPT--------LRILVLTMHAEQQYAVRAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   +  +   G  +               A++             L+
Sbjct: 99  SGYLTKESASAELVAAVTKVAAGGVYVSLAMAERFAQSLNEPADLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 151 DREFDVLKRIAAGQTITEIAAELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKLV 209


>gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 214

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++++ L  + E     V+ L  +   LA +           R+ A            
Sbjct: 3   EHARISVFLVDDHEVVRRGVADLLEQEPDLAVVGEAGSAEQALARIPAAA---------- 52

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      +L R +           L     L    F          
Sbjct: 53  -----PDVAVLDVRLPDGNGVELCRELRSK--------LPELRCLMLTSFTDEQAMTDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   +  +     ++           A       ++     G  
Sbjct: 100 LAGAAGYVIKDIKGMELVSAVRAVGSGRSLLDNRA-------AEALIRQLRAGTPDPGPL 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             LT +E   L  I EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   AVR
Sbjct: 153 ASLTEQERVLLDLIGEGLTNRQIAERMFLAEKTVRNYVSKLLAKLGVERRTQAAVLAVR 211


>gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus
           rhamnosus Lc 705]
 gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus
           rhamnosus Lc 705]
          Length = 202

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S +S L    D    +                    GA+ +  ++  
Sbjct: 2   ITLYLAEDQSMLNSALSQLLNLEDDSTVIGSAQD---------------GATAWQAIQSQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +                 +    F          A   
Sbjct: 47  PPDVAILDIEMPKMTGLDVADQIHTHALP--------TKVIILTTFAQKAYFQRAIAAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 99  NGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANM----------------VTAESNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN  +
Sbjct: 143 ERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWL 201


>gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 189

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  S--------CKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E +    EGKT++EIA  L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVMLLAKEGKTANEIAKALYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189


>gi|157374068|ref|YP_001472668.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157316442|gb|ABV35540.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 209

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 64/220 (29%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   +      +     G         +      LD  + 
Sbjct: 7   VLVVDDHPLLRRGICQLITSDSDFTLFGEAGS-----GLDALSATEENEPDIVLLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  +                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNGLRQEGVT--------SRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I       +           K           LT RE++ L  ++E
Sbjct: 114 LLEKLKNAMQGHRVISESVEDFLY--------ELKDAAEEEEWLNNLTPRELQILQQVAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GK++  I+ +L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GKSNRVISELLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|294055008|ref|YP_003548666.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614341|gb|ADE54496.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 238

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 67/226 (29%), Gaps = 23/226 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSS 80
            +       DL+ ++      V     M  + E   GA  + L          LD ++ +
Sbjct: 23  VIEDQTILRDLICQL------VEGYAGMKVIAESGDGAEGYELCLEHSPDLVILDIMLPN 76

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +++R +          +                            Y      +  +
Sbjct: 77  LNGSEVLRRLKSKNPKANILIFSAAASNS--------MVNRLLKSGVTGYIEKDAGLVEL 128

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + L+           +  +  L                    LT RE E +  I+E 
Sbjct: 129 EKAIALVSEGRSYFSPRIVEAMRELMV--------NGGQDDSLDSLTTREREIVQLIAES 180

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  LG+S  T + +  +IM+K      +    +A+ N +V
Sbjct: 181 YSNKEIAAKLGMSVRTADTHRTNIMKKLNLHDVAALTRWAIANKLV 226


>gi|320539476|ref|ZP_08039145.1| putative DNA-binding response regulator in two-component regulatory
           system with BarA [Serratia symbiotica str. Tucson]
 gi|320030601|gb|EFW12611.1| putative DNA-binding response regulator in two-component regulatory
           system with BarA [Serratia symbiotica str. Tucson]
          Length = 218

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 64/239 (26%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +       C                         +
Sbjct: 2   ISVFLVDDHELVRAGIRRILEDIKGIKVAGEAQCGEDAVRWCR---------------GN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 +   V    P          
Sbjct: 47  AVDIVLMDMNMPGIGGLEATRKIVRY--------TPGAKVIMLTVHTENPLPAKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S       +   L  +    R I  D   ++ L            +      F  L
Sbjct: 99  AGYLSKGAAPQDVINALRSVHAGQRYIASDIAQQMAL---------SQLEPQTETPFSCL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE++ +  I++GK  +EI+  L +S  TVN+Y   +  K            A+ + +
Sbjct: 150 SERELQIMLMITKGKKVNEISEQLSLSPKTVNSYRYRMFSKLNISGDVELTHLAILHGL 208


>gi|227501523|ref|ZP_03931572.1| possible response regulator [Corynebacterium accolens ATCC 49725]
 gi|227077548|gb|EEI15511.1| possible response regulator [Corynebacterium accolens ATCC 49725]
          Length = 219

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 23/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +     + +S +    + +  +                    G     L 
Sbjct: 1   MPKIRVMLADDQAMLVAALSTILNAQEDIEVVATAAS---------------GGDAVSLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +         + +                 +    F+         A
Sbjct: 46  LRHRIDVAILDIRMPGMDGIAAAQAILSR--------TPNCRIIMLTTFNEEDLVSQSIA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +     D   +   +  +     ++       +           +          
Sbjct: 98  AGAHGFLLKDADPEVLVHAVRDVAKGESVLAAQVTGPVLEGYRKALTHSQLSPHERQGLS 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE+E LT I+ G T+ EIA  + I+  TV  +++++M K A + R   +  A +  
Sbjct: 158 LVTRREMEVLTLIARGATNSEIAGHMSIADTTVKTHVSALMSKLAARDRVALVLLAHKAG 217

Query: 245 I 245
           I
Sbjct: 218 I 218


>gi|329903746|ref|ZP_08273607.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548226|gb|EGF32926.1| BarA-associated response regulator UvrY [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 215

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 21/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N+++  R           + L +++           + A     G     L R      
Sbjct: 1   MNKKETIRVLIADDHAIVREGLKQIL-----ADTKDIVVAGAAENGLDAVKLARAGEAHV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      ++++ +           +                 I       + Y 
Sbjct: 56  LLLDISMPDRSGIEVLKQIRKE-----CPAIAVLMLSM---HREDQYAIRSLKAGASGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +     A +   +  +    + I  +   E+              D        L+ RE 
Sbjct: 108 NKQSAPAELVNAIRQVASGRKYISTELAQELA--------NQVGDDREIPPHETLSDREY 159

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + LT I+ GKT  +IA  L +S  T++ Y + +++K   +  +    YA+RN++V
Sbjct: 160 QTLTMIASGKTVSDIASELVLSVKTISMYRSRLLQKMKLRHNAELTHYAIRNHLV 214


>gi|254495966|ref|ZP_05108874.1| transcriptional regulator falA [Legionella drancourtii LLAP12]
 gi|254354844|gb|EET13471.1| transcriptional regulator falA [Legionella drancourtii LLAP12]
          Length = 219

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 67/240 (27%), Gaps = 33/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L      +  +   +                G     LV+  
Sbjct: 2   IKVLIVDDHALVRMGIRRLLEDLSDVEVVADAES---------------GEQALALVKLH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     +++ R +  S              +      +            
Sbjct: 47  APDVVLLDMKMPGIDGWEVTRRLKKSN--------PHVKVIAVTAMCSDVLPTRVLQLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y +       +   +  +    R +  +   ++            S +   G  F  L
Sbjct: 99  MGYLTKESGAEEMAAAIRKVAKGERYLSAEIAQKVA---------INSLEEVHGSPFNIL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ +  I+ G    +I+  L +S  T+N Y      K   K        A+++ I+
Sbjct: 150 SEREMQVMLMITSGMNVQDISDRLFLSSKTINGYRYRTFEKLGIKNDVELTYLALKHGII 209


>gi|226948658|ref|YP_002803749.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226842846|gb|ACO85512.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 217

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + NI++  +++     +  + +  + +  +                    G     L 
Sbjct: 1   MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGD---------------GREALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIKEQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNIVVHPDVANNIILNTTY---EKELNDDDISLKY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTEREINIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 IV 246
           IV
Sbjct: 215 IV 216


>gi|218707313|ref|YP_002414832.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           UMN026]
 gi|293407309|ref|ZP_06651231.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           FVEC1412]
 gi|298383051|ref|ZP_06992646.1| transcriptional regulatory protein uhpA [Escherichia coli FVEC1302]
 gi|331665313|ref|ZP_08366214.1| transcriptional regulatory protein UhpA [Escherichia coli TA143]
 gi|218434410|emb|CAR15338.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli UMN026]
 gi|291425600|gb|EFE98636.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           FVEC1412]
 gi|298276887|gb|EFI18405.1| transcriptional regulatory protein uhpA [Escherichia coli FVEC1302]
 gi|331057823|gb|EGI29809.1| transcriptional regulatory protein UhpA [Escherichia coli TA143]
          Length = 196

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELISAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|209519712|ref|ZP_03268500.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209499856|gb|EDZ99923.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 215

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +          E    A+   L+R        LD  +      
Sbjct: 4   VLLADDHTLVRDGLRHILQQASGFEVAGEACDSATTIALIRATDAHVLVLDLSMPGRNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L+R +                 L   +       +       + Y +     A +   +
Sbjct: 64  ELIRQIKDER--------PELRILVLTMHAEQQYAVRAFKAGASGYLTKESASAELVGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +               A+              L+ RE E    I  G++  
Sbjct: 116 TKIASGGVYVSLAMAERFAQHLHEPADAL--------PHQRLSDREFEVFRRIVAGQSVT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  T++ +   I+ K      +G + YA+R+N+
Sbjct: 168 EIAHELCVSVKTISTHKTRILDKMQMPNENGLVRYAIRHNL 208


>gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5]
 gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5]
          Length = 239

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 70/233 (30%), Gaps = 21/233 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            +L+  +            +    E  G   F          +  ++ V + +P +  R 
Sbjct: 12  DNLIDALELARDQRMIKQALRHFCESNGFDRFA-----HLNVRSTETCVLTTYPAEWQRL 66

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDV 137
               +      V+            +  +                  G+ +         
Sbjct: 67  YFDKKYALIDPVVISAKRNMEIFSWSQDDASKYSKDVKRFFREADDFGIRSGLSIPIRTP 126

Query: 138 ARIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 L L   + R+    I         +  A+      +        +ELT REV C
Sbjct: 127 FGGTAILTLASEQRRVDFAGIQDTVRAMNAVAFAHAHLNRVAAAPCRRTKYELTPREVTC 186

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LTW S GKT  EIA +L I   TV NY+     K      + A+  AV  +++
Sbjct: 187 LTWASLGKTMSEIADLLQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQHLI 239


>gi|94313637|ref|YP_586846.1| Two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357489|gb|ABF11577.1| Two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 264

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 67/222 (30%), Gaps = 13/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S  M  +   E   G     L          +D  +      
Sbjct: 7   VLIVEDHNLLRAGLRSMLSAQMGYHVAGEARDGREACQLAISLCPDLILMDLSLPGMNGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +  +           ++    +   V               + Y         +   +
Sbjct: 67  DAIAAIKR-----RSPGIRI---IALSVHQNDEYVREALRAGVDGYVLKDTSFDDLVTAM 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++    + +  +    +  + +Y +               LT RE   L  ++EG+++ 
Sbjct: 119 RVVLLGKKHLSPELYGNL--VESYVSGH--EMSTAKTGWDLLTARERSVLKLVAEGRSNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ + + +S  T+  Y AS+MRK      +  +  A+   ++
Sbjct: 175 QVGIYMNLSPKTIEKYRASLMRKLGITNLTELVLIAISMGLI 216


>gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 213

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 61/221 (27%), Gaps = 14/221 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L  T+  +     L     A     L R        LD  +    
Sbjct: 3   TTIVLADDHPIFRDGLRKTLDDSGEFKVLAAGCDAEEAVRLTREHRPDLVILDLSMPGG- 61

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +A          +   T           +           Y       + +  
Sbjct: 62  GLGATRQIAALG---DAPRIAILTVS-----EDSNDVADALEAGATGYILKGVTASALTK 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +      +       + L          +     G   +LT RE E L  +++G +
Sbjct: 114 SLRSIAKGEGFVSPGLASRVLL----AIQKGNTPTGDRGVLGDLTHREEEILRRVAKGLS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EIA  L I   TV +Y+ SI+ K   + R  A   A   
Sbjct: 170 NKEIAAELSIQEKTVKHYMTSILSKLHARNRVEAALIAHEA 210


>gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
 gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
          Length = 227

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 24/244 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ + +  + E   + V            +  L  +     +   +          ++
Sbjct: 6   ADRIRVAVVDDHEMFRAGV------------IATLRDSFDIVGQAADV-----PGSVAMI 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  V           +  S       V    +    P      +  +   
Sbjct: 49  AQTKPQVVLLDVHVPGGEGGGGAEILTKSRAYSPATVFLALSVSDAP-----QDVGSVIR 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGK 182
                Y + T   A +   +  +     +        +         A    +  VH  +
Sbjct: 104 AGAQGYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSAFQGVPAAGADGAAPVHDEE 163

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +  I+ G T  E+AV L IS  TV  +++S++RK     R+    +A  
Sbjct: 164 LDRLSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTELTRWAAD 223

Query: 243 NNIV 246
             IV
Sbjct: 224 RRIV 227


>gi|62182280|ref|YP_218697.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224585585|ref|YP_002639384.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62129913|gb|AAX67616.1| response regulator (repressor) in two-component regulatory system
           wtih UhpB, regulates uhpT operon (LuxR/UhpA family)
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224470113|gb|ACN47943.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322716771|gb|EFZ08342.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 217

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 30/224 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLD 75
            RT  +  +    D L         +     +  + E  G+    L        Q    D
Sbjct: 17  IRTEPMITVALIDDHLIVRSGFAQLLGLEPDLQVVAE-FGSGREALAGLPGRGVQVCICD 75

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +L+  +            +    +   V  +              + S   
Sbjct: 76  ISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRC 124

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   G  +  D   ++                  G+   LT RE +   
Sbjct: 125 SPDELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVAE 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +++G    EIA  LG+S  TV+ + A+++ K            
Sbjct: 169 KLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAHR 212


>gi|302547687|ref|ZP_07300029.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465305|gb|EFL28398.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 235

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 17/232 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     M  + +   G       R        LD  +     
Sbjct: 4   RVLLADDQEMVRAAFRMIIDSQPDMRVVAQAADGTEAVDQARELRPDVCLLDIRMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A                L    F                +         +   
Sbjct: 64  LEATRLLAGPGVP--DP----LNVLIATTFDLDEYVYRALRNGACGFLLKDGAPGLLTEA 117

Query: 144 LMLLFPKGRIILRDRL-WEIGLLAAYQA---------NMFKSYDVHWGKDFELTGREVEC 193
           +        +I        +  +A ++          +              LT RE++ 
Sbjct: 118 VRAAAAGNSLISPSVTVRLLAQMAPHRHGPSPSEARPDRTAGGGGQDALTEPLTQRELDV 177

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  ++ G+T++E+A  L ++ +TV  ++ ++ RK A + R    A+A  N I
Sbjct: 178 VRRVARGRTNEEVAADLYVTLSTVKTHLGNVQRKLAARNRVEIAAWAWENGI 229


>gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 203

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S +S L    D    +                    GA+ +  ++  
Sbjct: 3   ITLYLAEDQSMLNSALSQLLNLEDDSTVIGSAQD---------------GATAWQAIQSQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +                 +    F          A   
Sbjct: 48  PPDVAILDIEMPKMTGLDVADQIHTHALP--------TKVIILTTFAQKAYFQRAIAAQV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 100 NGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANM----------------VTAESNPLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  AI  A RN  +
Sbjct: 144 ERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWL 202


>gi|89902503|ref|YP_524974.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89347240|gb|ABD71443.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 225

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 19/236 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +   +  ++ +           ++ AL    G    LL    
Sbjct: 2   IKVLIGDDHRIVREGLKQVLADAPDVSVLAEAASGPEVLAQVQALGGSAGLDLVLL---- 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++++ +  +        L        P        +       
Sbjct: 58  -------DIAMPQQDGLEVLQILRRTH-----PTLPVLMLSTYP---EKQYAVRCIKLGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + + D   +   +  +   G  +  D    +    A       +          L+
Sbjct: 103 GGYLNKSADPDDMVAAVRKVAAGGMYVTPDTAEALAAAMASAGRSGAAAQAVVAGVDALS 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE +    +S G    EI   L ++ NTV+ Y A I+ KT TK       YA R+
Sbjct: 163 HREYQVFRLLSMGHAVGEIGAQLKLASNTVSTYRARILEKTGTKNDVELALYAQRH 218


>gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 212

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 64/242 (26%), Gaps = 33/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I+L  +       +  L         +           ++               
Sbjct: 1   MPEIRILLADDHTLVRRGIRLLLEGVPDFCVVGESASGEETLQKLQQ------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +++  +           +     +   ++           
Sbjct: 48  --SQPNVLLLDISMPDTNGLEILSRVLE-----ISPAM---VVIMLSMYKDGEYIARALQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   + +       +      E            ++         
Sbjct: 98  AGARGYLWKDAPDEELIRAIRVAMSGEIYLPPGVSME----------HIQALIAAQPPVE 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  ++ G T+  IAV LG+S  TV  + + +M K      +    +A+R+ 
Sbjct: 148 RLTAREKQVLALLASGLTTQAIAVRLGVSPKTVETHRSHVMSKLDLYDIASLTRFALRHG 207

Query: 245 IV 246
           ++
Sbjct: 208 LI 209


>gi|253574622|ref|ZP_04851962.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845668|gb|EES73676.1| DNA-binding response regulator [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 247

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 50/246 (20%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R++  D        M  +               G       R +      LD  + +   
Sbjct: 4   RVLIADDNSFIREGMRIILNSFEEFEVAKTVEDGQKAVEYCRSNPVDVALLDVRMPNMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F      +         Y     D  RIR  
Sbjct: 64  VEATRLLTEEGL---------AKPLILTTFDDDEYVMDAIRFGAKGYLLKNNDPERIRDA 114

Query: 144 LMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDF------------------ 184
           +  ++    ++    L ++   LA+  A+                               
Sbjct: 115 IKSVYYGHNVLQDVVLDKLKQTLASGGASKEAEVPPPPESVSAQANATASPVTPAAASTP 174

Query: 185 -----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                        T RE+E ++ I++G ++ EIA  + IS  TV NYI SI+ KT  + R
Sbjct: 175 VGTGLSPSDLERFTERELEVMSRIAKGLSNKEIAKEIFISEGTVANYITSILNKTGLEHR 234

Query: 234 SGAIAY 239
           +    Y
Sbjct: 235 TQIAIY 240


>gi|167563389|ref|ZP_02356305.1| nitrate/nitrite response regulator protein NarL [Burkholderia
           oklahomensis EO147]
          Length = 199

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 16/197 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       +        LD  +      + ++ +           +     +   V    
Sbjct: 3   GVEGVKRAKQHQPDVILLDLNMPGLSGLETLQLLVQD--------VPSAHVVILTVSEDA 54

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFK 174
            E  T        +     D   +  G+        +I      +    L A   A    
Sbjct: 55  EELTTALRDGACGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPQAATRLA 114

Query: 175 SYDVHWGKDF------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                           +LT RE + +  ++ G ++ EIA    ++ +TV  ++ +I++K 
Sbjct: 115 QAAAPAPVAHASVDPDQLTPREHDIVRALARGTSNKEIAREFDVAESTVKIHVQNILKKL 174

Query: 229 ATKTRSGAIAYAVRNNI 245
              +R     YAV   +
Sbjct: 175 NLTSRVQIAVYAVERGL 191


>gi|88801325|ref|ZP_01116853.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
 gi|88781983|gb|EAR13160.1| putative nitrate/nitrite DNA-binding response regulator
           [Polaribacter irgensii 23-P]
          Length = 221

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 80/241 (33%), Gaps = 24/241 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + +  + +     +  +    + +  +       +                    + 
Sbjct: 4   KIFVHVADDHKILIEGIIAVIKTDENIEIIDFSLTGQAVIEWFNE-------------KE 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      LD  +     F+++R        +          +    +  +       +  
Sbjct: 51  NRADVLILDITMPILDGFEVLRYFQEKGIAQ--------KVIVLSSYDDVRIVQEVLSLG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
            + Y S     A I   +  +    +    D   E+  L +      ++ D+     F+ 
Sbjct: 103 ASGYISKNNAGAHIVHAIKAVANGEQYFSSDIQKEL--LKSISGQKARTGDMPQDLLFDS 160

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L  +S+  ++ EIA  + IS +TV +Y   ++RK   K   G   YAV+ N+
Sbjct: 161 LTEREKNVLRLVSKELSTSEIAEKMNISHHTVESYRKKLLRKLNVKNSVGLAIYAVKYNL 220

Query: 246 V 246
           V
Sbjct: 221 V 221


>gi|53717322|ref|YP_105442.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           ATCC 23344]
 gi|53721861|ref|YP_110846.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|67643757|ref|ZP_00442501.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|124381833|ref|YP_001024575.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10229]
 gi|126445821|ref|YP_001078908.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10247]
 gi|126457808|ref|YP_001075189.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134279179|ref|ZP_01765892.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167002970|ref|ZP_02268760.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|167723152|ref|ZP_02406388.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167742125|ref|ZP_02414899.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167819309|ref|ZP_02450989.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167827679|ref|ZP_02459150.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167849155|ref|ZP_02474663.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167897751|ref|ZP_02485153.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167906095|ref|ZP_02493300.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914415|ref|ZP_02501506.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167922318|ref|ZP_02509409.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217419110|ref|ZP_03450617.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226197579|ref|ZP_03793154.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237508500|ref|ZP_04521215.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242313108|ref|ZP_04812125.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254174129|ref|ZP_04880791.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|254183275|ref|ZP_04889867.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254189908|ref|ZP_04896417.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254192969|ref|ZP_04899404.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254204142|ref|ZP_04910501.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|254262449|ref|ZP_04953314.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254300180|ref|ZP_04967626.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|254355603|ref|ZP_04971883.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|52212275|emb|CAH38297.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52423292|gb|AAU46862.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 23344]
 gi|124289853|gb|ABM99122.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10229]
 gi|126231576|gb|ABN94989.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126238675|gb|ABO01787.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10247]
 gi|134249598|gb|EBA49679.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|147745026|gb|EDK52107.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|148023696|gb|EDK82758.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|157809984|gb|EDO87154.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157937585|gb|EDO93255.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160695175|gb|EDP85145.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|169649723|gb|EDS82416.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|184213808|gb|EDU10851.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217398414|gb|EEC38429.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225930188|gb|EEH26200.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|235000705|gb|EEP50129.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|238525169|gb|EEP88598.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|242136347|gb|EES22750.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243061391|gb|EES43577.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|254213451|gb|EET02836.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 215

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 65/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +          E    A+   LVR    Q   LD  +      
Sbjct: 4   VLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRNGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L++ +   +             L   +       +       + Y +     + +   +
Sbjct: 64  ELIKQIKEEK--------PALRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +               A               L+ RE +    I+ G+T  
Sbjct: 116 TKVASGGVYVSLAMAERFAQSLNEPAETL--------PHHRLSDREFDVFRRIASGQTLT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 168 QIADELCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKLI 209


>gi|311894358|dbj|BAJ26766.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 226

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 64/243 (26%), Gaps = 31/243 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+     + + L  + E     V  L      L  +           R+ AL        
Sbjct: 1   MSEGSAPIRVFLLDDHEVVRRGVHDLLDSEPDLQVVGEAGTVEQALARVPAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D  V      D        E       L          F      +
Sbjct: 53  ------------RPDVAVLDMRLPDGDGVTVCRELRSRMPRLACLM---LTSFDDEEALL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +     ++           A       +      
Sbjct: 98  DSIMAGAAGYVLKQISGTDLVTAIRTVASGQSMLDPGA-------ATRLMARMRGESPAP 150

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +F +LT RE E L  I EG T+ +I   + ++  TV N+I+ ++ K   + R  A   
Sbjct: 151 APEFPQLTDREREILALIGEGLTNRQIGERVYLAEKTVKNHISRLLAKLGVERRVQAAVI 210

Query: 240 AVR 242
           A +
Sbjct: 211 ATQ 213


>gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium
           bathyomarinum JL354]
          Length = 216

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 22/228 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V      +D LAR +     V       ++ E +    F L +    +   +D  + 
Sbjct: 8   VVIVEDRRETADRLARAVLQLAQVRTCSIARSVREGL----FELSQI-KPRAILVDLGLP 62

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +++R    ++      V+         VF      I   A     Y         
Sbjct: 63  DGSGVEIIRAAQAADWPCDSLVV--------TVFADEDRVIEAIAAGATGYILKNDRPEE 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWI 197
           +   L+ +   G  I          +A Y  N+    +       +  LT RE + L  I
Sbjct: 115 VGRNLLTVLEGGSPISP-------QIARYLLNLVPQPEEPKDDGLEIRLTAREKDILRLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G    E+A  L I+  TV  +I ++ RK    + + A+A A R  +
Sbjct: 168 AHGFKRQEVADKLNITVGTVGTHINNVYRKLEVGSNTQAVATANRLGL 215


>gi|212212606|ref|YP_002303542.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011016|gb|ACJ18397.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 240

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 18/231 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
           + R S +  +    D +     +   +     +  + E   G     L R        LD
Sbjct: 18  KMRKSRLISVLLIEDHVLIRRGMRLMLEQIKGIRIVGEASTGEEGLALRREKEPGVVILD 77

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +                  +    ++                +         + + + 
Sbjct: 78  FQLPDTNGL-----ELARRLLRRDPEIKILVVTAM---EGELLPMRLLEVGVRGFITKSS 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D A +   +  +    R I       + L                    +L+ R++E L 
Sbjct: 130 DSAELERAIRAVHSGQRYIGSAIASRLAL---------SKTTAAKSPFDQLSNRQMEVLL 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G  ++ IA  L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 181 LLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQYGLI 231


>gi|119717828|ref|YP_924793.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119538489|gb|ABL83106.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 229

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-------------RWDLFQ 70
            H  +R+   A ++ +D    +   + A  E  G     ++                   
Sbjct: 4   QHPASRAGGPAAIVIVDDHAMFRRGVRAELESAGRGLVRVLAEAADVDEAVAAVSTHRPD 63

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      +++R +  S         +        V     + I    G    Y
Sbjct: 64  VVLLDVHLPGGGGAEVMRRVTAS---HASPDTRYL---ALSVSDAAEDVIGTIRGGARGY 117

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            + T     +   +  +     +        +        +              LT RE
Sbjct: 118 VTKTITGPELVQAIGRVAEGDAVFSP----RLAGFVLDAFSGSIDVAAVDEDLDRLTERE 173

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E +  I+ G    E+A  L IS  TV  +++S++RK    +R     +A    ++
Sbjct: 174 REVMRLIARGYAYKEVAKELFISIKTVETHMSSVLRKLQLSSRHELTRWASDRRLL 229


>gi|329941697|ref|ZP_08290962.1| LuxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299414|gb|EGG43314.1| LuxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 67/237 (28%), Gaps = 27/237 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + E     V  L    D +  +          +R+ AL              
Sbjct: 12  PIRVFLLDDHEVVRRGVHDLLNDEDDIEVVGEAANAEQALVRVPAL-------------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       + R +     D           L    F      +      
Sbjct: 58  -RPDVAVLDVRLPDGDGVSVCRELRSRLPDLAC--------LMLTSFDDEEALLDSIMAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       + +   +  +     ++       +           +  +   G    L
Sbjct: 109 ASGYVLKQIKGSDLVSAVRTVARGQSLLDPSATTRLMARLRGGQAKEEEPEALPG----L 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A + 
Sbjct: 165 TDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221


>gi|196233056|ref|ZP_03131904.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222863|gb|EDY17385.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 65/240 (27%), Gaps = 38/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       +         L  +                    G       R 
Sbjct: 4   KIRVLIVDDHAMMRLGLVEAIAGERDLTLVGEAAN---------------GTQCLEQYRK 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +                 +   VF    +        
Sbjct: 49  HQPDVVTMDFRLPGADGAESTAHLRTE--------FPDARVVVLSVFEGEEDIWRAVEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y S + +V  +   +  +                 +A+  A+              L
Sbjct: 101 AMGYVSKSAEVEEVLEAIRCVVGGETYFP-------APIASKLASRRTRDA--------L 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  I  G ++ EIA  L +S  TV  +I++ + K     R+ A   AV+  I+
Sbjct: 146 TPREHQVLHHIVAGLSNKEIAAALHMSEATVKLHISNTLAKLHVADRTQAAIVAVQRGII 205


>gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi
           HTCC2506]
          Length = 226

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 16/221 (7%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSEKDKYY 99
                   +       G ++   +      EQ L +  +  +W     R    +E  ++ 
Sbjct: 6   NEADLEAALAMAGNTYGFTYAAALALPSTDEQGLQTRYLMGNWSHGFQRSYEAAELHRHK 65

Query: 100 NVLQRPTELFCPVFHTLPE------------NITPPAGM-DNRYCSLTFDVARIRIGLML 146
            V+   +    P    +                                 +  +   L  
Sbjct: 66  VVVATLSTDPMPFEWDIDTLYGISDPKPSKGARLVAEAGWSEGVLLPVHGMTAMCGALSF 125

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWISEGKTSDE 205
             P   +  R  ++E+   A     M  +       ++  LT RE +CL     GKTS E
Sbjct: 126 AGPN-ALPSRTVIYEMQSFAFVFFGMLAAVRFDENRRNNPLTPRERDCLRLAMLGKTSSE 184

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I ++L +S  T++ Y+ +  RK     R+  +A A +   +
Sbjct: 185 IGIVLSLSEYTISQYLTAAQRKLDASNRTHTVAMAAQLGYL 225


>gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 207

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 24/223 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D L   + +   V+    M  + E   G     + R        LD  +     
Sbjct: 6   RILVAEDHLVARVGVVTIVNMQPDMTVVAEAANGQQAVEMYRLHQPDVSLLDLRMPGIGG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 +    +    +     A     Y +       +   
Sbjct: 66  VEAAIAIRAE--------FGGARMIALTTYGGDEDIRRALAAGVQAYLTKDVLHDELIKA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +                              +L+ REV+ L  I  G  +
Sbjct: 118 IRAVHAGQTYLPAAVAA---------------SLAAQLPRPDLSAREVQVLGLIVRGLAN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L I+ +TV N++ +I+ K   + R+ A   A++  I+
Sbjct: 163 KQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRGII 205


>gi|319426043|gb|ADV54117.1| two component transcriptional regulator, UvrY [Shewanella
           putrefaciens 200]
          Length = 214

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISIYLVDDHELVRTGIRRILEDERGIKVIGEAPD---------------GETAVQWSRQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   V    P          
Sbjct: 47  EADVILMDMNMPGMGGLEATRKILRYQ--------PHAKIIVLTVHTEDPFPSKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L     A+              L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPADE--------NPFKALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 209


>gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 257

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 67/230 (29%), Gaps = 15/230 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R   V   P   D LAR       +         T    A    +V         LD
Sbjct: 30  RPPRVVVVDDHPLWRDALAR------DLDQAGLPVVGTAGSVAQALRVVAATRPDLVVLD 83

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +++R +               + L         + +       + Y   + 
Sbjct: 84  LSLPDGSGVEVIRALLGPGH----ASGFTGSVLVVSASGEQADVLAAVKSGASGYLVKSA 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +        +        +    +  A               LT RE+E L 
Sbjct: 140 RPEELVDAVRRTADGVPVFGAGLAALVLGDLSRAARRPAEPGTPS-----LTAREIEVLR 194

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++G ++ + A  LG+S  TV N++ +++ K   + R     +AVR   
Sbjct: 195 LVAKGLSAKDAAARLGVSPRTVQNHVHNVLSKLRLRNRVELTRFAVRAGY 244


>gi|327254678|gb|EGE66294.1| transcriptional regulatory protein uhpA [Escherichia coli STEC_7v]
          Length = 205

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 24/226 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V          A+++ L+  +    +     +         +  +      +D  +  
Sbjct: 1   MLVDDHVVVRSGFAQLLSLEDDLEVIGQYSCAAQAW-----SALTHNDVNVAVIDIAMPD 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L++ +   +             +   ++       +      + Y +       +
Sbjct: 56  ENGLSLLKRLRAQKPQF--------RAIILSIYDAPTFVQSALDAGASGYLTKRCGPEEL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D +  +           +           LT RE E    + +G
Sbjct: 108 VQAVRSVGLGGHYLCADAIRAL-----------RGGGQPAQALEILTPREREVFDLLVKG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 157 DSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 202


>gi|170699628|ref|ZP_02890666.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171317297|ref|ZP_02906494.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|170135444|gb|EDT03734.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171097558|gb|EDT42395.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 218

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       V HL     +   +   +        +   T              
Sbjct: 3   LNILLVDDHAIVRQGVRHLLIDRGVAREVTEAETGSDAVAAVDRQT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      +L++ +                      +      +       
Sbjct: 49  -FDVILLDISLPDTNGIELLKRIKRKL-----PGTPVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 SGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|146302355|ref|YP_001196946.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146156773|gb|ABQ07627.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 219

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 26/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +  L      +  +                    GA    +V   
Sbjct: 5   IRVVLADDHVFVRDGIKSLLENEANIEVVGEAID---------------GADALEVVTAT 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    ++V  +     +           +   +  +    +       
Sbjct: 50  KPDLLIVDIRMPNLTGIEVVEKLRSENNN--------VKIIMLSMHESEEYVLKSIKAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFEL 186
           + Y             L  +   G+    D      L++    +          G++  +
Sbjct: 102 DGYLLKGSSKEEFLKALHAVSSGGKYFSGDI--SSILISQLTNSTASLEPKQTLGEEMMI 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E LT +  GK + EIA  L IS+ T   +  ++M+K   K        A   +++
Sbjct: 160 TKREKEILTLLLSGKGNKEIAEALEISKRTAEVHRFNLMKKLKVKNLMELSNKAAEYSLI 219


>gi|256420776|ref|YP_003121429.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035684|gb|ACU59228.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 211

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 10/176 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
           E++ D ++      D+      +   K Y  ++            L             Y
Sbjct: 46  ERQPDVLLLDMHLPDMSGPELAASILKNYPQVRILVLSS---SDVLFLVKKMLKLGCMGY 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   I   +  +   G+ +      ++                   K+  LT RE
Sbjct: 103 LLKESDDVTILQAIETVQKGGQYLSPALNQQLI-------EDMFRNKKSEKKNTALTRRE 155

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I +  T+ EIA  L +S +TV N+  S++ K   K  +G +  A++  +V
Sbjct: 156 KEVLQLIIDEHTNQEIADKLFLSLHTVENHRISLLHKLEVKNTAGLVKVALQTGLV 211


>gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 18/231 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D   R+  +   +  +     +T   G     L+          D  +     ++
Sbjct: 6   LIADDDPGIRLA-VKDFLELSGY-SVVTAKNGQEALSLLETYHPHLLVSDIKMPRTNGYE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV  +    + +   V+    +          E I       + Y    F++  +   + 
Sbjct: 64  LVAQVRQRPEFRLLPVVFLTEKST------TSERIRGYQAGCDVYLPKPFEMEELGAVIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKS------YDVHWGKDF----ELTGREVECLT 195
            L  + +II  +  ++   +A  QA+  K        D    K      ELT RE + L 
Sbjct: 118 NLLERSQIIESEWRYKNRQIAQKQAHSPKIEPEEKIIDPLPPKPTVELPELTEREKQVLE 177

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ N++V
Sbjct: 178 LLAQGLSNVEIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDNDLV 228


>gi|78062502|ref|YP_372410.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|206563343|ref|YP_002234106.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|77970387|gb|ABB11766.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
 gi|198039383|emb|CAR55348.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++                   G S   LVR    Q   LD  + 
Sbjct: 4   VLIADDHTLVRDGLRHILQNATGFEVAGEA-----CDGPSTIALVRATPAQVLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +   +             L   +       +       + Y +     A 
Sbjct: 59  GRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +      +        A               L+ RE +    I+ 
Sbjct: 111 LVGAVTKVASGGVYVSLAMAEQFAQSLNEPAETL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 163 GQTLTEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKLL 209


>gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 220

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 71/227 (31%), Gaps = 16/227 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
           T+ V  +    D    +  L   +     +  + E   G +   LVR        +D  +
Sbjct: 5   TAPVIRVVIADDHRIVLDGLAALLDSIDGIEVVGEATSGEAAVTLVRSLQPDVVLMDIEM 64

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +  S              L   ++       +        Y        
Sbjct: 65  PGIGGVEATRRIRASHS--------ATAVLMLTMYGEDEFVFSALRAGARGYLLKGARQD 116

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     +   D       +A      F           +LT RE E L  ++
Sbjct: 117 DVIRTINAVARGDAVFGAD-------IAGRVLTAFTDPRPAGVTFPQLTDREREVLVLVA 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G  +  IA  LG+S  TV N+++SI+ K     R+ AI  A R  +
Sbjct: 170 DGWPNHRIAHRLGLSAKTVANHVSSILAKLHAPDRAAAILQARRAGL 216


>gi|110834165|ref|YP_693024.1| DNA-binding response regulator GacA [Alcanivorax borkumensis SK2]
 gi|110647276|emb|CAL16752.1| DNA-binding response regulator GacA [Alcanivorax borkumensis SK2]
          Length = 217

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +        +  L               
Sbjct: 2   IKVLVVDDHDLVRTGIARMLDEVDGLQVVGEANSGERAIQMVRELA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +  R +          V +    +   +    P          
Sbjct: 48  -PEVVLMDLKMPGIGGLEATRKLLR--------VDEGIRVIAVTMCEDEPFPSRLMKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D+  +   + ++    R I  +    + L                 +   L+
Sbjct: 99  AGYMTKGADLEEMVRAIKIVATGQRYISPEIAQVMAL--------KPYSGDEGSQLDMLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I       ++A  L +S  TVN Y   I  K    +       AVR+ ++
Sbjct: 151 ERELQIMMMIVSCHKVQDVADKLCLSPKTVNTYRYRIFDKLGVTSDVEMALLAVRHGML 209


>gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 237

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 79/241 (32%), Gaps = 18/241 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLD 75
            T+ V   P       R++ +D        + A  E  G      V  +      +Q L 
Sbjct: 1   MTASVPEQPPV-----RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLP 55

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D     +    L  + +    L     +F        +         + Y    F
Sbjct: 56  DVVITDVMMPRLDGYGLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPF 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--------- 186
           D   +   +  +  + + +L++            A           +   L         
Sbjct: 116 DPDELVARVRNVAQRQQRLLQEAARFADADMGQMAKQITEIRSLLAQAEALPAQEPVQHS 175

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+++ +
Sbjct: 176 FTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALQHRL 235

Query: 246 V 246
           V
Sbjct: 236 V 236


>gi|297159387|gb|ADI09099.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 224

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +      +  +                    G       R  
Sbjct: 7   IRVLLADDEAMIRAGVRAVLAAGPGIEIVAEAGD---------------GREAVEAARAH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +  +        L          F           G  
Sbjct: 52  RPDVALLDIRMPRLDGLSACEEIRRT--------LPDTAVAMLTTFSEDAYIARALGGGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     D   +  G+  +      +         ++                +   LT
Sbjct: 104 TGFLLKAGDPHELIAGVRAVAGGAAFLSPKVAR--HVITELGGERLTRGAAARARTDVLT 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G ++ EIA  L +   TV  Y+++++ +     R  A   A    +V
Sbjct: 162 AREREVLALVGAGLSNAEIARRLHLVEGTVKGYVSAVLDRLEVGNRVQAAIVAYEAGLV 220


>gi|271963471|ref|YP_003337667.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506646|gb|ACZ84924.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 205

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 19/218 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVR 88
           + R++ +D        + A+ +  G            +  +L    D ++        + 
Sbjct: 1   MIRLLLVDDHPVVRKGLRAIFDQAGDMAVTGEAATGEEAVRLAPGADVVLMDLRLGAGMS 60

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
               +         + P  L    + T  +           Y         +   +  + 
Sbjct: 61  GAESTRLIGGLP--RPPRVLVLTTYDTDGDIFAAIEAGAAGYLLKDAPTDDLLDAIRAVA 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               I+       +                       L+ REVE +  +++G ++ +IA 
Sbjct: 119 RGETILAPPVAARL-------------VTRMRSPRASLSPREVEIVLLVADGLSNRQIAR 165

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV +++  I  K     R+GA+  A R  ++
Sbjct: 166 ELFISEATVKSHLVHIYAKLEVDNRTGAVKVARRRGLL 203


>gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281489|gb|ABR89899.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 214

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 78/239 (32%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  + +    +A             ++ +L               
Sbjct: 2   IQILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L++ +  +       +L                 +       
Sbjct: 47  QVDVLVLDMSMPGRSGIALIQQI--NAIKPDLPILVLSMHQ------ESQYAVQAMRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     +++  G+  +   G  +  +   ++                      +LT
Sbjct: 99  SGYITKNTASSQLIEGIRKVAEGGTFVSPEISAKLI--------KQLHKPETDLPHTKLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +  + + EG + ++IA IL +S  T++ + A++++K    T +  + YA+++ ++
Sbjct: 151 AREFQIFSMLVEGHSVNDIAKILSLSNKTISTHKAAVLQKMEASTTASLVYYALKHGLI 209


>gi|320324325|gb|EFW80404.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328552|gb|EFW84554.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330885589|gb|EGH19738.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 214

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPPVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|260682876|ref|YP_003214161.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686474|ref|YP_003217607.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209039|emb|CBA62150.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212490|emb|CBE03410.1| two-component response regulator [Clostridium difficile R20291]
          Length = 217

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 80/247 (32%), Gaps = 32/247 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M F + ++ +++  +++     ++ + +  D L  +                    G   
Sbjct: 1   MIF-LNKIKVLIVDDEKLIRKGLNIILSSYDDLEIVGDASN---------------GYEA 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
               + +      +D  +         R +       Y + +          F+      
Sbjct: 45  LEFCKTNDVDIVLMDIRMKVCDGVLGTRLIKE-----YDSSIALL---ILTTFNDDEYIE 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y         +  G+   F    ++ +         A       K+ +   
Sbjct: 97  DAMKFGASGYLLKDSSDEVLHEGIRSSFFGNIVLDKSV-------AEKIMYPQKTIEQKH 149

Query: 181 GKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             D + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+  + +
Sbjct: 150 ISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILGKLELRDRTQLVIF 209

Query: 240 AVRNNIV 246
           A +N IV
Sbjct: 210 AFKNKIV 216


>gi|152966492|ref|YP_001362276.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361009|gb|ABS04012.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 242

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 71/258 (27%), Gaps = 34/258 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + +++  +     S ++ +   +  +  +            M  L        
Sbjct: 1   MTGSATALRVLVVDDQPLARSGITGILAGAAQVQVVGEAADGQQALELMEEL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      +++R +   E             +    F    E +
Sbjct: 53  -------EPDVVLLDLRMPVLGGVEVLRRLRAQE------RFAAVRVVVLTTFDGDDEVV 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------------GLLAA 167
              A   + + S   D   I   +  +      + +  L  +                  
Sbjct: 100 QAMAAGADGFLSKASDPDDILQAITSVASGDIALSQRALRAVVAGLPTPTPADDRAQRTG 159

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                         +   LT RE + +  ++ G  + +I   L IS  TV  +++  M K
Sbjct: 160 AGGEGAVEVARLRARVELLTARERDVVVAVARGLDNTQIGEELFISPLTVKTHVSRAMTK 219

Query: 228 TATKTRSGAIAYAVRNNI 245
              + R+  +A A R  I
Sbjct: 220 LRVRDRAQLVAIAYRAGI 237


>gi|186681901|ref|YP_001865097.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464353|gb|ACC80154.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 240

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 73/257 (28%), Gaps = 33/257 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +++I+L  + +     +         L  +            +               
Sbjct: 1   MNEISIILIEDHDLTRMGLRAALQSHSALKVIGEAANATQGLKLLETA------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R     + +      +        + HT    +   A
Sbjct: 49  ---KPDVAVVDIGLPDMDGIELTRKFKRHQAETGQTTTKIL---ILTMDHTEDAVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------------- 170
              + Y      ++++   +         I       +                      
Sbjct: 103 AGADSYYMKETSISKLTEAIQATHGGNSWIDPAIANVVLRKMRQGIPGESQNSDKPKTVK 162

Query: 171 -NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                S      + + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K  
Sbjct: 163 IEALASEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLC 222

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 223 ADDRTQAAVRALRSGLV 239


>gi|303256885|ref|ZP_07342899.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|330998866|ref|ZP_08322593.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302860376|gb|EFL83453.1| DNA-binding response regulator, LuxR family [Burkholderiales
           bacterium 1_1_47]
 gi|329576080|gb|EGG57599.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 220

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 78/240 (32%), Gaps = 25/240 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   I+L  +    T+ +S L        ++                 +       +++
Sbjct: 2   VKPQTILLVDDHSLITTAMSALLQSMYPDVQIHVGATAKEAVELAEKYGDSAD---LMIL 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L   Q  D +V     +  ++ + LS      ++L+                    +
Sbjct: 59  DLGLPDSQGTDLLVRLLQNYPALKILVLSGNCDPDSILK------------------ALS 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T D   ++  +  +   G  I    L +   +        +   V+     
Sbjct: 101 AGAAGYVPKTLDANLLKSTINFVLEGGVYIPSKILSQQQSMGM----SPQQPVVNPSSKV 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+ + L  +S+G +   I   + +S  T+  ++ ++ R    + R+ A+  A RN 
Sbjct: 157 HLTTRQCQVLKLLSQGDSIKTICRKMDLSEGTIKTHVTALYRAFDARNRTEALIAARRNG 216


>gi|190574796|ref|YP_001972641.1| putative two-component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190012718|emb|CAQ46347.1| putative two-component system response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 217

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 27/230 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
                 V   P   D LA ++     +             G       +        +D 
Sbjct: 7   PIGVLVVDDHPLLRDGLAALLGAQPDLRLLGEA-----ADGEEAIAHYQQLQPDVVLMDL 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + +  +   +         R   +    +      +       + Y      
Sbjct: 62  QMPRLDGVEAIVRIRAMD--------PRARIIVLTTYRGDVRAVRALQAGASAYLLKDML 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + ++    R  +   +     +AA+                 L+ RE E L  
Sbjct: 114 RHELVDTIRMVAGGRRAPIPPAVA--ASIAAHVVED------------RLSPRETEVLRH 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++  I   + IS  TV  ++ S+M K     R+ A+  A+R  I+
Sbjct: 160 VAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRRGII 209


>gi|167839424|ref|ZP_02466108.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 215

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 64/222 (28%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +          E    A+   LVR        LD  +      
Sbjct: 4   VLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPANVLVLDLSMPGRNGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L++ +   +             L   +       +       + Y +     + +   +
Sbjct: 64  ELIKQIKEEK--------PALRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +               A               L+ RE +    I+ G+T  
Sbjct: 116 TKVASGGVYVSLAMAERFAQSLNEPAETL--------PHHRLSDREFDVFRRIASGQTLT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 168 QIADELCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKLI 209


>gi|226943848|ref|YP_002798921.1| Two-component response regulator, LuxR family [Azotobacter
           vinelandii DJ]
 gi|226718775|gb|ACO77946.1| Two-component response regulator, LuxR family [Azotobacter
           vinelandii DJ]
          Length = 211

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  + +   S +S L +    +A              +   T              
Sbjct: 2   ISVLIVDDHQLFRSGLSRLLSEDRKIAVEGEAASLPQAMEILRRQT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    +D  ++     +L+  +        +  L        P       +        
Sbjct: 48  -FHVAIVDINLAGRSGLELLSRIR-----HDWPRLPVLMISMYPAA---QFSAVAFQKGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S   +   +   +  +   G+    D        A      F +          LT
Sbjct: 99  SGYLSKDVEPGELLRAVKTVAKGGQY---DASHPSATPAQVADERFANQ-----PHLRLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I  G    EI   + +S  TV+ Y   IM K      +  I YA+R+ I+
Sbjct: 151 DREMQIFNLIVTGARLTEIGERILLSVKTVSTYKTRIMEKLGVNNNAELIQYAIRHGIL 209


>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 227

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 15/229 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +  +     +T   G     +V          D I+     ++
Sbjct: 5   ILVVDDDLGTRLSVSDYLELSGY-SVITANDGQEALFMVDEYNPDLIVTDIIMPQMNGYE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +      +   V+               E I       + Y    F++  +   + 
Sbjct: 64  LVRRVRQQAMFRLLPVILLTART------KTQERILGYQSGCDLYLPKPFELEELAAAIR 117

Query: 146 LLFPKGRIILRDRLW---EIGLLAAY-----QANMFKSYDVHWGKDFELTGREVECLTWI 197
            L  + +II  +  +   E   ++         N   +          LT RE E L  +
Sbjct: 118 NLLERSQIIQSEYRFSHKESLGISGLTKPGDAHNSLSTQIQTSHLHSSLTHREQEVLELL 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ ++   L +S  TV  Y++S++RKT+T  R+  + +A+++ +V
Sbjct: 178 THGLSNADMGHQLHLSPRTVEKYVSSLLRKTSTSNRAELVRFAMKHGLV 226


>gi|325291416|ref|YP_004267597.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966817|gb|ADY57596.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 208

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 20/222 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       + L  ++ ++             E +      + R        +D  +   
Sbjct: 5   IVDDDALIREGLELILKMEPDFEVLGAAGNAQEALE-----ICRRKKPDLVLMDIRMPVM 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 + +            +    +    F                Y         I 
Sbjct: 60  DGVLGTKHLKNQ--------FEEIKVVMLTTFMDEEYIKEALKCGAEGYILKNQPADSII 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +     ++ R+        A   ++M +       +   ++ RE   L  + EG 
Sbjct: 112 ESLRAVAKGNIVLEREV-------ATALSSMLREGKKTTPEQLAISPREFAILKLVGEGC 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ EI   L IS  TV NY+ +++ K   + R+    + ++N
Sbjct: 165 SNREIGRELKISEGTVRNYVTALLEKLGFRDRTQLAIFYIKN 206


>gi|237880801|gb|ACR33059.1| response regulator [Actinoplanes garbadinensis]
          Length = 220

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 58/227 (25%), Gaps = 11/227 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT-EYVGASHFLLVRWDLFQEQKLDSI 77
            T     +    D           V     M  +     GA    L          +D  
Sbjct: 1   MTRPPIAVLIADDQELVRTGFAMVVDAAPDMRVVAIAASGAEAIELAAEHRPDVILMDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +  +      + P  +    + +            + Y       
Sbjct: 61  MPGTDGITATSAILAAGGE------RPPKIIALTTYDSSDYATRILTAGASGYLLKDATA 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +   +  G +I       +    A      +            T RE +    I
Sbjct: 115 EGLTAAIRSAYHGGSVIAPTTTRNLVAARAEPPPPARDPAPLD----TFTARERDVFDLI 170

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G  + EIA  L ++  TV  ++  ++ K   + R   + +A RN 
Sbjct: 171 VAGANNAEIAARLHLAEVTVKTHVGRVLAKLGVRDRLNVVVWAYRNG 217


>gi|227498188|ref|ZP_03928359.1| two-component system response regulator [Actinomyces urogenitalis
           DSM 15434]
 gi|226832414|gb|EEH64797.1| two-component system response regulator [Actinomyces urogenitalis
           DSM 15434]
          Length = 246

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 66/241 (27%), Gaps = 25/241 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS 79
             V  L    D       L   +     M  + +   GA     V+ +      LD  + 
Sbjct: 1   MSVIRLALTDDEPLLTAGLAMILDAQDDMEVVWQATSGAQALRQVQDEQVDLLLLDVQMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  RC+                 +    F T    +         +   +     
Sbjct: 61  GIDGIETTRCLTSQGW--------GGKVVILTTFDTDGYVLGAIEVGAAGFLLKSTPPQE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSY------------DVHWGKD 183
           +   +  +     +I       +       A+       S                    
Sbjct: 113 LLAAIRTVHAGDSVISPGPTRRLLAAVRGGASSLHAAPASALHSDPGQVITAEGTPPADL 172

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  I+ G ++ E+   L +S  TV  +++ ++ KT  + R   +  A+R 
Sbjct: 173 SGLTHREREILRLIALGLSNQELCDRLWLSMPTVKTHVSHLLAKTGARDRVHLVLTALRC 232

Query: 244 N 244
            
Sbjct: 233 G 233


>gi|225175239|ref|ZP_03729235.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169415|gb|EEG78213.1| two component transcriptional regulator, LuxR family [Dethiobacter
           alkaliphilus AHT 1]
          Length = 218

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 16/206 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D     + L   +        + E   G     + R  +     +D  +   
Sbjct: 1   MVRVMIVDDHAVVRVGLKSLIELHGDFSVIAEAGSGEEAVEVARETVPDVVVMDVRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D  R +           +     +    +       +      + Y     D A++ 
Sbjct: 61  SGIDACRAIVE--------AVPDTKVIMLTSYADDEAIYSAILAGASGYVLKQTDNAKLL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                   K        + +L+  E + L  I+EGK
Sbjct: 113 EAIEQAARNESLLDPHVT-------GKVLKRMKEIAAATQYEAKLSETEKKILVLIAEGK 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRK 227
            + EIA  L ++  TV NY++ I  K
Sbjct: 166 RNKEIAEELFLAEKTVRNYVSKIFSK 191


>gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 209

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 24/223 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L   V+    M  + E   GA    L          +D  +     
Sbjct: 8   RILIADDHYVVRMGLIALVNTEPDMEVVAEAADGAQALELFAKCNPDLALMDLRMPVKSG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +                 L    F    +           Y   +    ++   
Sbjct: 68  VQATLEIRNR--------FATACVLMLTAFDGDEDIHKALQAGAQGYVLKSSTGEKLIPA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +    R I ++    + L                    +L+ REV+ L+ ++ G  +
Sbjct: 120 LRAVAAGQRWIPKEVANRLAL---------------RNSFEQLSPREVQVLSELARGLAN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L I+ +T  +++ SI+ K     R+ A+  A++  I+
Sbjct: 165 KEIADVLNITEHTTKDHLKSILAKLRVADRTEAVTVALQRGII 207


>gi|71065269|ref|YP_263996.1| LuxR family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038254|gb|AAZ18562.1| putative transcriptional regulator, LuxR family [Psychrobacter
           arcticus 273-4]
          Length = 211

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +S +   S  +  +   D                G     L +  
Sbjct: 2   IRVLVVDDHDLVRMGISRMLADSADIEVVGEADS---------------GDMAIKLAKQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +  + +   +       ++             P          
Sbjct: 47  RPDVILLDVNMPNIGGLEATKRLIQLDM-----GIKILAVSSMSA---QPYPSMLIKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +    +  +   +  ++  GR   +D   ++  +           D        L+
Sbjct: 99  NGYITKGTPLDEMIRAVKKIYQGGRYFSQDVAEQLADVLL--------SDNANSPFDLLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +   ++  +IA  L +S  T+N Y   I  K    +       A+R+ ++
Sbjct: 151 DREKQVAMMVVNCQSPQQIADQLFVSVKTINTYRYRIYEKVNVDSDVKLTHLAIRHGLI 209


>gi|324998336|ref|ZP_08119448.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 224

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 60/222 (27%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L R        +D  +     
Sbjct: 3   RVVLADDQSVVRAGFRVFLELAGDVEVVGEAADGPGAVRLARELAPDVVCMDVRMPGGNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +              P  L    F                +         +   
Sbjct: 63  LAATREIVSGP-------APAPAVLVVTTFDLDEYVFGALEAGAGGFVLKDTGPDDLVHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L     ++       +  +  +        ++       LT RE E +  ++ G ++
Sbjct: 116 VRRLAAGYGLVDHAVTRRV--ITEFARRRPAPDELPPVPVTPLTPRESEIVRLLARGMSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +  +TV +++   M K   + R   + +A R+ I
Sbjct: 174 AEIADELVVELSTVKSHLGRAMAKIGARDRVQTVVWAYRSGI 215


>gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR
 gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 209

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 77/240 (32%), Gaps = 33/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++   + E     +S   +    +  +           + + L              
Sbjct: 2   PIKVLFVDDHEMVRIGISSYLSTQSDIDVVGEGKSGKDAIEKAHEL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D ++      +    +     +           +    +    E        
Sbjct: 48  -KPDLILMDLLMDDMDGVEATEQVKKDLPNI--------KVVMLTSYIEDNEVYRALDSG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   T   + I   +   +    +   + L ++        N  K     +     L
Sbjct: 99  VDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKM-------RNRMKQRAELYE---ML 148

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N++
Sbjct: 149 TEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208


>gi|327480698|gb|AEA84008.1| DNA-binding response regulator GacA [Pseudomonas stutzeri DSM 4166]
          Length = 211

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 69/237 (29%), Gaps = 30/237 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  + +   + +S +      L  +   D       +   L                 
Sbjct: 1   MLVVDDHDLVRTGISRMLADISGLQVIGQADSGEDAIRKAREL---------------KP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      +  R +  S  D           +   +    P            
Sbjct: 46  DVVLMDVKMPGIGGLEATRKLLRSYPD--------LKVIAVTICEEDPFPTRLLQAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +    +  +   + ++F   R I      ++ L +         +D        L+ R
Sbjct: 98  YLTKGAALEEMVQAIRMVFGGQRYISPQIAQQLALKSFQPQLSESPFD-------LLSER 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++    I+  +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EIQIALMIANCQKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMV 207


>gi|229493089|ref|ZP_04386884.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229320119|gb|EEN85945.1| DNA-binding response regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 219

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             +V++V+  +       V    T SD +  +   D   +    +  L            
Sbjct: 9   AGKVSVVVGDDHPLFREGVVRALTGSDSIDVLGEADDGAAALAMIREL------------ 56

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  +       +   +   E             L                
Sbjct: 57  ---RPQVALLDFRMPHLDGTQVAAAVVRDELP--------TRVLLLSAHDESSVVYQALQ 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   ++       ++          +AA      +      G   
Sbjct: 106 AGAAGFLPKESTRAEIVSAVLDCAAGRDVLPPS-------IAAGLVGEVRRRSEPSGP-- 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I++G +   IA  L ++ +TV  ++  +  K     R  A+A A+R  
Sbjct: 157 TLSAREREVLGLIAQGASIPVIASQLFLAPSTVKTHVQRLYEKLGVNDRGAAVAAAMRQG 216

Query: 245 IV 246
           ++
Sbjct: 217 LL 218


>gi|296139583|ref|YP_003646826.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027717|gb|ADG78487.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 213

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  +     + +  L   S  +  +       +   +  AL               
Sbjct: 3   VTVVLADDHAAIRAGLRLLLESSGEVEVIGEAADGAAALRQAKAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 L    F      +   A   
Sbjct: 48  RPDVVIMDVRMPRVDGIAATAHVVAET---------DAAVLVLTTFDLDDYVLGALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +     +  G+  +     ++       +        ++             LT
Sbjct: 99  SGFLLKSAGGDELIRGVQAVAAGDAVLDPKVTRAV------ITSLPAPPTAVHPDLSSLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GRE + L  +  G ++ +IA  L I   TV  +++ ++ K   ++R  A   A ++ +
Sbjct: 153 GRERDVLAGLGAGLSNYQIARRLEIGEATVKTHVSRVLMKLGVQSRVQAAVIAAQSGL 210


>gi|195940868|ref|ZP_03086250.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O157:H7 str. EC4024]
          Length = 197

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 61/219 (27%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+          +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLNLEPDFQVVAEFGS-----GREALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  LSGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVRTVSTGGCYLTPDIAIKLA----------------AGRQDPLTRRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  EIAV LG+S  TV+ + A++M K            
Sbjct: 153 MSVKEIAVELGLSPKTVHVHRANLMEKLNVSNDVELARR 191


>gi|127511776|ref|YP_001092973.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126637071|gb|ABO22714.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 209

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   +      +     G      +  +      LD  + 
Sbjct: 7   VLVVDDHPLLRRGICQLITSDSDFTLFGEAGS-----GLDALSAIAENEPDIVLLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  +                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNALRQEGVT--------SRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I                   K           LT RE++ L  ++E
Sbjct: 114 LLEKLKNAMQGHRVISESV--------EDFIYELKDGADEQAWIDNLTPRELQILEQLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GK++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GKSNRVISEQLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|15610269|ref|NP_217649.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Rv]
 gi|15842706|ref|NP_337743.1| LuxR family DNA-binding response regulator [Mycobacterium
           tuberculosis CDC1551]
 gi|31794309|ref|NP_856802.1| two component transcriptional regulatory protein DevR
           [Mycobacterium bovis AF2122/97]
 gi|121639016|ref|YP_979240.1| two component transcriptional regulatory protein DevR
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148662987|ref|YP_001284510.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Ra]
 gi|148824327|ref|YP_001289081.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis F11]
 gi|167970198|ref|ZP_02552475.1| two component system transcriptional regulatory protein devR
           (luxR/uhpA-family) [Mycobacterium tuberculosis H37Ra]
 gi|215405131|ref|ZP_03417312.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|215413001|ref|ZP_03421702.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428587|ref|ZP_03426506.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T92]
 gi|215432092|ref|ZP_03430011.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis EAS054]
 gi|215447421|ref|ZP_03434173.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T85]
 gi|218754909|ref|ZP_03533705.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis GM 1503]
 gi|219559179|ref|ZP_03538255.1| two component system transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis T17]
 gi|224991508|ref|YP_002646197.1| two component transcriptional regulatory protein [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253800166|ref|YP_003033167.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233755|ref|ZP_04927080.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis C]
 gi|254365759|ref|ZP_04981804.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552223|ref|ZP_05142670.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188172|ref|ZP_05765646.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|260202279|ref|ZP_05769770.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|260206471|ref|ZP_05773962.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289444697|ref|ZP_06434441.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|289448812|ref|ZP_06438556.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555407|ref|ZP_06444617.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 605]
 gi|289571343|ref|ZP_06451570.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T17]
 gi|289575844|ref|ZP_06456071.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289746943|ref|ZP_06506321.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|289751809|ref|ZP_06511187.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T92]
 gi|289755253|ref|ZP_06514631.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis EAS054]
 gi|289759262|ref|ZP_06518640.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis T85]
 gi|289763316|ref|ZP_06522694.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503]
 gi|294995500|ref|ZP_06801191.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis 210]
 gi|297635775|ref|ZP_06953555.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732772|ref|ZP_06961890.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN R506]
 gi|298526608|ref|ZP_07014017.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306777449|ref|ZP_07415786.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu001]
 gi|306782174|ref|ZP_07420511.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu002]
 gi|306785994|ref|ZP_07424316.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu003]
 gi|306790359|ref|ZP_07428681.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu004]
 gi|306794886|ref|ZP_07433188.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu005]
 gi|306799085|ref|ZP_07437387.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu006]
 gi|306804929|ref|ZP_07441597.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu008]
 gi|306809118|ref|ZP_07445786.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu007]
 gi|306969219|ref|ZP_07481880.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu009]
 gi|306973567|ref|ZP_07486228.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu010]
 gi|307081276|ref|ZP_07490446.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu011]
 gi|307085878|ref|ZP_07494991.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu012]
 gi|313660105|ref|ZP_07816985.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN V2475]
 gi|81818247|sp|P95193|DEVR_MYCTU RecName: Full=Transcriptional regulatory protein devR (dosR)
 gi|1781234|emb|CAB06281.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY
           LUXR/UHPA-FAMILY) [Mycobacterium tuberculosis H37Rv]
 gi|4335782|gb|AAD17452.1| DevR [Mycobacterium tuberculosis H37Rv]
 gi|13883027|gb|AAK47557.1| DNA-binding response regulator, LuxR family [Mycobacterium
           tuberculosis CDC1551]
 gi|25992275|gb|AAN77131.1| putative response regulator [Mycobacterium bovis]
 gi|31619905|emb|CAD95249.1| TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY
           LUXR/UHPA-FAMILY) [Mycobacterium bovis AF2122/97]
 gi|121494664|emb|CAL73145.1| Two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124599284|gb|EAY58388.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis C]
 gi|134151272|gb|EBA43317.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507139|gb|ABQ74948.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis H37Ra]
 gi|148722854|gb|ABR07479.1| two component system transcriptional regulatory protein devR
           (luxR/uhpA-family) [Mycobacterium tuberculosis F11]
 gi|224774623|dbj|BAH27429.1| two component transcriptional regulatory protein [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|253321669|gb|ACT26272.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417616|gb|EFD14856.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T46]
 gi|289421770|gb|EFD18971.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440039|gb|EFD22532.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 605]
 gi|289540275|gb|EFD44853.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis K85]
 gi|289545097|gb|EFD48745.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T17]
 gi|289687471|gb|EFD54959.1| two component transcriptional regulatory protein DevR
           [Mycobacterium tuberculosis 02_1987]
 gi|289692396|gb|EFD59825.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis T92]
 gi|289695840|gb|EFD63269.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis EAS054]
 gi|289710822|gb|EFD74838.1| two component transcriptional regulatory protein devR (probably
           luxR/uhpA-family) [Mycobacterium tuberculosis GM 1503]
 gi|289714826|gb|EFD78838.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis T85]
 gi|298496402|gb|EFI31696.1| two component transcriptional regulatory protein devr
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214161|gb|EFO73560.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu001]
 gi|308325136|gb|EFP13987.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu002]
 gi|308329392|gb|EFP18243.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu003]
 gi|308333215|gb|EFP22066.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu004]
 gi|308336672|gb|EFP25523.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu005]
 gi|308340512|gb|EFP29363.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu006]
 gi|308344452|gb|EFP33303.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu007]
 gi|308348448|gb|EFP37299.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu008]
 gi|308353078|gb|EFP41929.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu009]
 gi|308357051|gb|EFP45902.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu010]
 gi|308361006|gb|EFP49857.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu011]
 gi|308364614|gb|EFP53465.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis SUMu012]
 gi|323718221|gb|EGB27401.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis CDC1551A]
 gi|326902643|gb|EGE49576.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis W-148]
 gi|328459904|gb|AEB05327.1| two component system transcriptional regulator devR [Mycobacterium
           tuberculosis KZN 4207]
          Length = 217

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L             D  +       ++ E +       V   
Sbjct: 2   VKVFLVDDHEVVRRGLVDLL----------GADPELDVVGEAGSVAEAM-----ARVPAA 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D    +L          + +    +       
Sbjct: 47  RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLIL--------TSYTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +           +           LT
Sbjct: 99  SGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAAL-------MAKLRGAAEKQDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A   
Sbjct: 152 DQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATEL 207


>gi|315181638|gb|ADT88551.1| response regulator [Vibrio furnissii NCTC 11218]
          Length = 204

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     + +++ L+                GA    L          LD  +  
Sbjct: 1   MLVDDHPLMRRGINQLLSLEDEFDVVAEASN-----GADAIALAHEVEPDMILLDLNMKG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D ++ +               T +   V  +  +         + Y     +  ++
Sbjct: 56  MSGLDTLKALRTDGSS--------ATIVILTVSDSAADIEAIVRAGADGYLLKDTEPDQL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L       +                 A   +           LT RE + L  +++G
Sbjct: 108 VELLKEAVHGNKAYSDV-----------VAAYLRDRQDQQDVFDLLTDREAQILGEVAKG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 157 YRNKQIADRLFISESTVKVHMKSLLKKLRVPSRTAATVLFLER 199


>gi|157375592|ref|YP_001474192.1| response regulator [Shewanella sediminis HAW-EB3]
 gi|157317966|gb|ABV37064.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 214

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +                       G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRILEDERGIKVTGEAGD---------------GETAVHWSRSN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 47  EADVILMDMNMPGIGGLEATRKILRYQ--------PHAKIIVLTIHTEDPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L         +           L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVAHGQRYLSPEIAQQMAL--------SQFNQTEENPFKTLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITSGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 209


>gi|149914980|ref|ZP_01903509.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
 gi|149811168|gb|EDM71005.1| 2'-deoxycytidine 5'-triphosphate deaminase [Roseobacter sp.
           AzwK-3b]
          Length = 219

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 70/240 (29%), Gaps = 36/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I +  +       +  +    D +  +  L    +   R+ AL              
Sbjct: 8   PIRIAIVDDHPMVAQGLRTILESYDDIEVIASLSSGEAIIERVEAL-------------- 53

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +           +                 L   +  +     +  +  
Sbjct: 54  -QPDVILLDLNMPGIGGLSTAEIILERR--------PETRILILSMHDSPEYITSALSHG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         I+  +  +    R +       +                  G++ +L
Sbjct: 105 AVGYVLKDVPTEEIKHAIDAVMTGQRYLCTGAKGSL------------EPYQRPGRE-QL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 152 TNREQTILLQLAQGKSNKDVAHTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 211


>gi|126173037|ref|YP_001049186.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|153002219|ref|YP_001367900.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|160876940|ref|YP_001556256.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|125996242|gb|ABN60317.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151366837|gb|ABS09837.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
 gi|160862462|gb|ABX50996.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315269144|gb|ADT95997.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 209

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 63/220 (28%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   S            G      V  D      LD  + 
Sbjct: 7   VLVVDDHPLLRKGICQLIASDPDFSLFGEAGG-----GLDALTAVATDEPDIILLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  M                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNAMRQEGVT--------SRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I  +    +           K           LT RE++ L  ++E
Sbjct: 114 LLEKLKNAMLGHRVISDEVEEYLY--------ELKDATDEQEWISSLTPRELQILEQLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|297571832|ref|YP_003697606.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932179|gb|ADH92987.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 222

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 57/221 (25%), Gaps = 3/221 (1%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       +   +     M    +       +     L  +   D ++      
Sbjct: 4   RIFIVDDHALVRAGVISQLEPIANMDVTGQAESVDDAITQLTTLEPDAVPDVVLLDVHLP 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                       +          L   V     + +         Y +   +V  +   +
Sbjct: 64  GGNGGGGAEVARRVLAAGVSTRFLALSVSDAANDVVAVIRAGARGYVTKAVNVDELVEAI 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +              +      Q       D    +   L+ RE E +  I+ G T  
Sbjct: 124 KRVAGGDAAFSPRLAGFVLDAFGSQTTDIAERDEELDR---LSEREQEVMRLIARGYTYR 180

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E A  L IS  TV  ++++++RK     R     +A    I
Sbjct: 181 ETATELFISIKTVETHVSAVLRKLQLSNRHELSRWAALRGI 221


>gi|288958558|ref|YP_003448899.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910866|dbj|BAI72355.1| two-component response regulator [Azospirillum sp. B510]
          Length = 213

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 65/214 (30%), Gaps = 17/214 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSSDWP 83
           +    D L     L   +       +  E       L        F    +D  +     
Sbjct: 3   ILIGDDHLLFREGLRRLLEQLQGGASFVEAGTFDEVLDQCRAGGTFDIILMDLHMPGWPG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           FD +R +   +      V+               +           Y   +  V  +   
Sbjct: 63  FDGLREIQALQPGV--PVVVISASEALGDIRGALD------HGATGYIPKSSSVKVMMGA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
           L L+F  G  +    L      A       +       ++  + LT R+ E L  +  GK
Sbjct: 115 LNLVFSGGIYLPPGALTASMDAAPR-----RRSIEVTDRNAGYGLTQRQREVLECLRLGK 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ++ +IA  LG+S  TV  ++ +I +    K R+ 
Sbjct: 170 SNKQIAYELGLSEGTVKIHVTAIFKSLGVKNRTQ 203


>gi|302535883|ref|ZP_07288225.1| response regulatory protein [Streptomyces sp. C]
 gi|302444778|gb|EFL16594.1| response regulatory protein [Streptomyces sp. C]
          Length = 207

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 21/225 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D +     L   +     +  L E   G     L          +D  +   
Sbjct: 1   MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLRPDVVLMDLQL--- 57

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +  + +                 + T  +           Y         + 
Sbjct: 58  --GEGIDGVEATRRITALPGPPHVLV--LTTYDTDADITRAIGAGATGYLLKAERPEELF 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +         +          +A+      +      G    LT RE++ L  ++ G 
Sbjct: 114 AAIHSAAAGRTTLS-------APVASRVMAHMR------GTRPTLTDRELDILGQLARGL 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 161 GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 205


>gi|62737761|gb|AAX98178.1| response regulator [Streptomyces aizunensis]
          Length = 201

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 36/236 (15%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L  +       +S +   +D ++ +   D        +  L                  
Sbjct: 1   MLVDDHPVVREGLSSMLQSADGVSVVGQADSGEEAIAMVTRLA----------------- 43

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               D ++       +          +     +         + +  + +         Y
Sbjct: 44  ---PDIVLLDLQMGGMDGVETTGHLLRVAPATKVVIVTT---YESDTDILRAVEAGAAGY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +        ++      ++             +     +   L+ RE
Sbjct: 98  LLKGSSRDELVQAVKAAARGETVLTPSLAPKL-------------FRARVVEPPALSDRE 144

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  +S G T+ +I   L IS  TV  ++    +K +   R+ A+  A++  ++
Sbjct: 145 REVLQLVSLGLTNADIGRQLFISEATVKTHLLRSFKKLSVSDRTAAVITALKLGLL 200


>gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586]
          Length = 250

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 28/236 (11%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCMALS 93
                     ++A T+ +G    +     + +  +   I  S     + P D+ R     
Sbjct: 13  ATRLEEAFAGLFARTQALGFDAVIYDYTPVPRSLEGALITPSLLEMRNVPDDMRRLWCER 72

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPE-NITPPAG-----------------MDNRYCSLTF 135
              +   V     E   P   +    + +   G                 M         
Sbjct: 73  GYYQVDPVQHFALESCAPFVWSYQRPDRSALHGRLDEHAQEVTHYMRDNNMPCGATVPLH 132

Query: 136 DVARIRIGL--MLLFPKGRIILRDRLWEIGLLAAYQANM---FKSYDVHWGKDFELTGRE 190
                 + L  ++   +    + + L ++  LA              +   +  +L+ RE
Sbjct: 133 LPNGGFVTLTGIVTDQREERDISETLAQLTFLAHRFQESAFPLFDASMLTCRHVKLSNRE 192

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ECL W +EG T+ EIA  L  S  TV  ++ +  +K     R  A+  A+   ++
Sbjct: 193 RECLAWSAEGLTAKEIARKLHRSVATVTLHLNTAAKKLGATNRVQAVVRALHYRLL 248


>gi|171914538|ref|ZP_02930008.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 236

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 59/242 (24%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +       +  L      +  +   +                G       
Sbjct: 1   MTPITVLLAEDHTIVREGLRALLELEPDIVIVGQAEN---------------GHLAVEFC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +  R +  S              L                
Sbjct: 46  LTLCPDVVVLDIAMPRLNGLEAARQILRSAAPP--------KVLILSAHSDDAYVEQVME 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  ++                 A    N             
Sbjct: 98  LGASGYLIKQTAAHALTKAIREVYKGNSFFSPTISRRRNHHAQKAYNQGDLPSRKAPS-- 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I+EGK + E A IL IS  TV  +  S+M K      +    +A+   
Sbjct: 156 RLSSRETEVLQLIAEGKANKETAEILHISVKTVEKHRQSLMEKLNIHDTASLTRHAIATG 215

Query: 245 IV 246
           I+
Sbjct: 216 II 217


>gi|153211868|ref|ZP_01947715.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587]
 gi|153800895|ref|ZP_01955481.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3]
 gi|153824326|ref|ZP_01976993.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2]
 gi|153829689|ref|ZP_01982356.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39]
 gi|229514128|ref|ZP_04403589.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21]
 gi|229528499|ref|ZP_04417890.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           12129(1)]
 gi|124116944|gb|EAY35764.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587]
 gi|124123605|gb|EAY42348.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3]
 gi|148874810|gb|EDL72945.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39]
 gi|149741880|gb|EDM55909.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2]
 gi|229334861|gb|EEO00347.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           12129(1)]
 gi|229348108|gb|EEO13066.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21]
          Length = 208

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGN---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + +        LT 
Sbjct: 101 GYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNREHTSNPFEALTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|121585556|ref|ZP_01675352.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           2740-80]
 gi|121725924|ref|ZP_01679224.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52]
 gi|147671981|ref|YP_001215452.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|153818114|ref|ZP_01970781.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457]
 gi|153820709|ref|ZP_01973376.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33]
 gi|227812241|ref|YP_002812251.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2]
 gi|229506165|ref|ZP_04395674.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX
           330286]
 gi|229509977|ref|ZP_04399457.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33]
 gi|229516462|ref|ZP_04405909.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9]
 gi|229605704|ref|YP_002876408.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           MJ-1236]
 gi|254849833|ref|ZP_05239183.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MO10]
 gi|298499474|ref|ZP_07009280.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MAK 757]
 gi|121550173|gb|EAX60187.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           2740-80]
 gi|121631689|gb|EAX64057.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52]
 gi|126511382|gb|EAZ73976.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457]
 gi|126521752|gb|EAZ78975.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33]
 gi|146314364|gb|ABQ18904.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|227011383|gb|ACP07594.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2]
 gi|227015263|gb|ACP11472.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395]
 gi|229346343|gb|EEO11314.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9]
 gi|229352422|gb|EEO17362.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33]
 gi|229356516|gb|EEO21434.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX
           330286]
 gi|229372190|gb|ACQ62612.1| nitrate/nitrite response regulator protein [Vibrio cholerae
           MJ-1236]
 gi|254845538|gb|EET23952.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MO10]
 gi|297541455|gb|EFH77506.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           MAK 757]
          Length = 208

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGS---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + +        LT 
Sbjct: 101 GYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNREHTSNPFEALTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 241

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 13/226 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
            R++ +D        + A  E  G      V  D      ++ L  +V SD         
Sbjct: 15  PRLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKAQEMLPDLVISDVMMPRCDGY 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L ++ +    L     +F        +         + Y    FD   +   +  +  +
Sbjct: 75  GLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEELVARVRNVVRR 134

Query: 151 GRIILRDRLW----EIGLLAAYQAN---MFKSYDVHWGKDFEL---TGREVECLTWISEG 200
              +LR+       ++G +A        M    D    KD  L   T RE   L  ++EG
Sbjct: 135 QDRLLREAARFADTDVGQMARQITEIRTMLAHGDGSSSKDVALHNFTPREASVLQLVAEG 194

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N +V
Sbjct: 195 LMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENQLV 240


>gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 225

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 77/241 (31%), Gaps = 25/241 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ +V+  +     + +       + +  +                    G +   LV 
Sbjct: 3   EKIRVVIADDHPVVRTGLRLRLDMEEWIELVGEAAD---------------GVAAIHLVS 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +     +D  + +    + +  +  +              +    +      +     
Sbjct: 48  ELVPDVVLMDLRMPAMDGLEAIEQIRAT--------FPHIAIIVLTTYDEDELMLRSLQA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +  +   +        ++  + L  +  L         +       + +
Sbjct: 100 GVRGYLLKDSGLETVLQAIERAARGEMLLQPELLQRV--LDYAARRAAPASPPPGNSNVQ 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G+ S EI   LGI+R TV +Y+ SI  K    +R+ A+A A+   +
Sbjct: 158 LTEREQEVLAGIATGERSKEIGARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIERGL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|312198094|ref|YP_004018155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311229430|gb|ADP82285.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 63/229 (27%), Gaps = 16/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         LAR+   +                GA     V         +D  
Sbjct: 2   IRVVIVDDQAIVRTGLARIFGAEDGFDVVAEC-----ADGAQAVATVTRLRPDLVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +            + P  L    F                +       
Sbjct: 57  MPRLDGIEATRQL--------CAAPEPPPVLALTTFDEDEVLWGVIEAGAQGFVLKDSTA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +     ++   G             +         S      +   LT RE + L  +
Sbjct: 109 EDLLAAARVVAAGGAWFDPAVAPR---MMRAYRGAVASRRREAARLDLLTAREHDVLRLL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+ + EIA  L +S  TV ++I +I  K   + R+ AI +A  + IV
Sbjct: 166 ARGQVNAEIAQALRVSPGTVKSHIGAIFEKLGVRDRAAAIVFAFDHGIV 214


>gi|111224125|ref|YP_714919.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111151657|emb|CAJ63376.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 270

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 70/264 (26%), Gaps = 50/264 (18%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   GA    LV         +D  + +   
Sbjct: 10  RVLLADDQALVRGGFRLILDARPGIEVVGEAGDGAEAVELVGRREPDVVLMDVRMPTMDG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A S              +    +              + +       A +   
Sbjct: 70  IEATRRIAASGS--------AARVIILTTYDLDEYVFAALRAGASGFMLKDVRPAELVDA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLL-------------------------------------- 165
           + ++F    ++       +                                         
Sbjct: 122 VRVVFRGDALLAPTVTRRLLDRFARTLPSVADASAPASDGPAGRRRAGPGPLGRPVRGIS 181

Query: 166 ---AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              AA      +          ELT RE   L  ++   ++ EIA  L ++  TV  +++
Sbjct: 182 PPDAAGVGGEGEWGARPRSGLAELTEREAVVLRLVALALSNAEIATELVLTEATVKTHVS 241

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK   + R  A+ +A  + +V
Sbjct: 242 AVLRKLGLRDRVQAVVFAYDHGLV 265


>gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 188

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 13/190 (6%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G S     R         D  +      +L R +A  E      V  +   +    F 
Sbjct: 6   ADGNSALSQARALTPDVVLADIRMPGIDGLELTRRLAGPE------VADKLRVVVVTTFD 59

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                 +        Y         +   +        +I          +         
Sbjct: 60  LDEYVYSALRDGACGYLLKRSGPTLLVEAIRAAMTGDTLISP-------QITVRLLREMM 112

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             +        L+ RE+E +  +++G T+ EIA  L IS  T  N++A++  K     R 
Sbjct: 113 RPEPKSADTSVLSERELEVVALVAQGLTNAEIAEKLFISAGTAKNHLANVQAKLGVGNRV 172

Query: 235 GAIAYAVRNN 244
           G  A+A    
Sbjct: 173 GIAAWAWETG 182


>gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 214

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 70/222 (31%), Gaps = 14/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   ++ T  +  +         L L+     +   +D  +      
Sbjct: 6   VLIIEDRADIVARLSDAINVTEGLTLVGCASTLDQGLNLLFDLKPRILLVDIGLPDGSGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + V   A ++      V+         +F      +         Y     D+ +I   +
Sbjct: 66  EAVHACAAADWLVDAVVV--------SIFGDEARVLEAIQAGAKGYLLKGADLGQIGTDI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +   G  I       +  +                    LT RE E L  ++ G    
Sbjct: 118 LSVLDGGSPISPGIARHLLAVVKDGG-----TGSVEPGLSPLTEREAEILQAVARGYKRH 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LGIS  TV N+I SI RK    T   A+A A +   +
Sbjct: 173 EIAQHLGISAGTVGNHITSIYRKLEVSTNMEAVARASKKGFL 214


>gi|120599190|ref|YP_963764.1| response regulator [Shewanella sp. W3-18-1]
 gi|146292739|ref|YP_001183163.1| response regulator [Shewanella putrefaciens CN-32]
 gi|120559283|gb|ABM25210.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|145564429|gb|ABP75364.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
          Length = 226

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I L  + E   + +  +      +  +                    G +     R +
Sbjct: 14  ISIYLVDDHELVRTGIRRILEDERGIKVIGEAPD---------------GETAVQWSRQN 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   V    P          
Sbjct: 59  EADVILMDMNMPGMGGLEATRKILRYQ--------PHAKIIVLTVHTEDPFPSKVMQAGA 110

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L     A+              L+
Sbjct: 111 SGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPADE--------NPFKALS 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 163 ERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 221


>gi|262165477|ref|ZP_06033214.1| BarA-associated response regulator UvrY [Vibrio mimicus VM223]
 gi|262171754|ref|ZP_06039432.1| BarA-associated response regulator UvrY [Vibrio mimicus MB-451]
 gi|261892830|gb|EEY38816.1| BarA-associated response regulator UvrY [Vibrio mimicus MB-451]
 gi|262025193|gb|EEY43861.1| BarA-associated response regulator UvrY [Vibrio mimicus VM223]
          Length = 188

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 11/174 (6%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D ++       +    A  +  +    ++    +   V    P            Y +
Sbjct: 21  HADVVLMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGAAGYLT 77

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   + ++    R I  +   ++ L     A+             +L+ RE++
Sbjct: 78  KGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLSERELQ 129

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 130 IMLMITKGQKVTEISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 183


>gi|71738055|ref|YP_274533.1| response regulator, DNA binding component GacA [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558608|gb|AAZ37819.1| response regulator, DNA binding component GacA [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 214

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S              +   V    P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSHPYI--------KVVAVTVCEEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|52426340|ref|YP_089477.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308392|gb|AAU38892.1| CitB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 225

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 38/234 (16%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           EI  + + L  +     S  + L +  + +  +            +  +           
Sbjct: 23  EITMIKVALIDDHVIVRSGFAQLLSLEEDIEVVGEFGSAKETRQNLPRI----------- 71

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +  +   DL++ +                 +   V  +        
Sbjct: 72  ----KADVCIIDISMPDESGLDLLKSI---------PSGIHC--IMLSVNDSEMIVKKAL 116

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y S       +   +  ++  G  ++ +   ++              + +    
Sbjct: 117 ELGAKGYLSKRCSPEELVQAVRTVYTGGVYLMPELTVKLVT------------NKNNNPI 164

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +LT RE+E    +  G  + EI   LG+S  TV+ + A+ M K   K      
Sbjct: 165 QQLTKRELEICELLIRGLGAKEIGEQLGLSFKTVHAHRANAMSKLDVKNNVELA 218


>gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 215

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + ++ L    D ++ +  +D   S    + A                
Sbjct: 6   ILVLLVDDHPVVRAGLAALINGLDDMSVVAEVDDLESTLRAVRA---------------H 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +        V  +A  ++       +         + T  + +       
Sbjct: 51  RPQVILMDLNL-GSAEHSGVEIIAELQRGVDGPAPKIL---VLTTYQTESDILRALDAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +        ++       +                       +T
Sbjct: 107 LGYLLKDAPAEELLSAIRATARGETVLSPAIAATL-------------VRRSSQPGPTIT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G  + E+A  + IS  TV  ++A +  K    TR+GA+A A+   I+
Sbjct: 154 EREVEVLELLARGMGNKELAKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRII 212


>gi|325068114|ref|ZP_08126787.1| LuxR family two component transcriptional regulator [Actinomyces
           oris K20]
          Length = 253

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 17/235 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       +S +  R+D L              ++ AL E          
Sbjct: 30  LRPITVMIVDDQRATRMGLSLIINRADDLQVTAEAVHGQDALDQLAALLEE--------- 80

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R  L     +D  +      D    +      + Y  ++         +          +
Sbjct: 81  RRPLPDVVLMDVRMPVLNGIDATARI-----CQLYPSIRVL---VLTTYDQDEFAFGALS 132

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       A +   L  +     I+      E+       +           +  
Sbjct: 133 AGASGFLLKDTRTADLHQALRAVSSGDAILTPRITRELLNRHMLSSVASPRQRAARQRLD 192

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ RE E    +++G T+ EIA  L ++ ++V   +  I+ K   + R   +  
Sbjct: 193 DLSPREREVADLVAQGLTNAEIAQRLVLAPDSVKKNVTRILTKLDLRDRVQLVIL 247


>gi|312194794|ref|YP_004014855.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226130|gb|ADP78985.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 219

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 30/233 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  + E     +      +  +  +           ++                    
Sbjct: 1   MFLVDDHEVVRRGIRETLQDTGEIEVVGEASTAAEALRQIPTAA---------------P 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD+ +      ++ R +     +    +L          +       +        
Sbjct: 46  NVAVLDARLQEGSGIEVCREIRADHPEIGCLIL--------TSYDDDEALFSAITAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y       A +   +  +     ++                +  +   V   +   L  R
Sbjct: 98  YVLKQIVGADLVGAIHAVAAGRSLLDPAVTRR-------VLHRLREGPVQDPRLAPLGDR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E E    + EG ++ +IA  LG+S  TV NY++S++ K    +R+ A   A +
Sbjct: 151 EREVFHLLGEGLSNRQIAGRLGLSDKTVKNYVSSMLSKLRLTSRTQAAILATK 203


>gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 209

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 23/221 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV-SSDW 82
            +    D L     L   ++    +  + E   G      +         +D  + +   
Sbjct: 6   RVFLVDDHLVVRAGLRALLNTQPDVEVVGEASSGEEAATAIPSASPDLVMMDLDMGTGMH 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +     D           L    + T  + +         Y         I  
Sbjct: 66  GAEAIKRLRSDGVD--------VPVLVFTTYDTDADVVRAVDAGAIGYLLKDSTPDEIFG 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        ++       +                       LT RE E L+ ++EG T
Sbjct: 118 AVRGAVAGRSVLSPAVASRL-------------VQQMQRPQEALTARESELLSLLAEGMT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + E+   L IS  TV  ++  I  K    TRS A++ A+R 
Sbjct: 165 NRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRR 205


>gi|157146847|ref|YP_001454166.1| transcriptional regulator FimZ [Citrobacter koseri ATCC BAA-895]
 gi|157084052|gb|ABV13730.1| hypothetical protein CKO_02622 [Citrobacter koseri ATCC BAA-895]
          Length = 210

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 80/242 (33%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D                  +    +
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLEKNSNIQVVLKTDDN---------------RTAVDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +     F L++ +          + +    LF               
Sbjct: 46  RTYPVDLVILDIELPGTDGFTLLKRIKS--------IQENTKILFLSSKSESFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I   ++ +             D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFISNTSSRKGEH---------NDM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  ++
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIFSKLGLHTIVELIDYAKVHD 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|119960584|ref|YP_948678.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119947443|gb|ABM06354.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 224

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 80/242 (33%), Gaps = 31/242 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +V+  +     S +       DL  R+  +    +    +  + E            
Sbjct: 12  RVRVVIVDDHTIFRSGLKA-----DLDERINVVGEAGTVEQAIAVIAE------------ 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 + + ++        +             +L   + L   V     + ++     
Sbjct: 55  -----SRPEVVLLDVHLPGGLGGGGREVIAGSAALLATTSFLALSVSDAAEDVVSVIRAG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDF 184
              Y + T     I   ++ +     +           LA +  + F     D+   +  
Sbjct: 110 ARGYVTKTISGKEISDAVIRVADGDAVFSPR-------LAGFVLDAFGTAPADIADDELD 162

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE+E +  I+ G +  E+A  L IS  TV  ++++++RK    +R     +A    
Sbjct: 163 KLSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRKLQLSSRHELTKWAAERR 222

Query: 245 IV 246
           ++
Sbjct: 223 LL 224


>gi|170767047|ref|ZP_02901500.1| transcriptional regulatory protein UhpA [Escherichia albertii
           TW07627]
 gi|170124485|gb|EDS93416.1| transcriptional regulatory protein UhpA [Escherichia albertii
           TW07627]
          Length = 196

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLALLSHLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVAAGGCYLTPDIAVKLA----------------SGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 237

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 85/234 (36%), Gaps = 25/234 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASH---------FLLVRWDLFQEQKLDSIVSSDW 82
           L  R++ +D        + A  E  G            F+  +  L      D ++    
Sbjct: 9   LTPRLLLVDDEPGLRTAVQAYLEDEGFDVTTAEDGEEGFIKAQQMLPDLVISDVMMPRLD 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            F L+R +   E+     V+      F        +         + Y    FD   +  
Sbjct: 69  GFGLLRKLREDERLGGTPVI------FLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVA 122

Query: 143 GLMLLFPKGRIILRDRLW----EIGLLAAYQ---ANMFKSYDVHWGKDFE---LTGREVE 192
            +  +  + + +L++       ++G +A       ++    D    +D      T RE  
Sbjct: 123 RVRNVAQRQQRLLQEAARFADTDMGQMAKQITEIRSLLAQADALPNQDPVQHNFTPREAS 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + YA+++++V
Sbjct: 183 VLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTETSSRTELVRYALQHHLV 236


>gi|330944504|gb|EGH46490.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 214

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPPRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|315499426|ref|YP_004088229.1| transcriptional regulator, luxr family [Asticcacaulis excentricus
           CB 48]
 gi|315417438|gb|ADU14078.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus
           CB 48]
          Length = 248

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 67/228 (29%), Gaps = 19/228 (8%)

Query: 38  PLDCTVSWTMRMYALTEYVGASH--FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
            +       +       ++G     F ++R            + S +P       A +  
Sbjct: 19  RVRSVERLFVVFIEAMAHLGFDRVNFSVMRDMDLDASAQGFGLISTYPTVWQDYYAHNGL 78

Query: 96  DKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRI 142
            +   V++       P      E                   G+ N           +R 
Sbjct: 79  ARIDPVVKWAVGSVRPFRWADIEHEAELTRRQRQFLREAEAGGLYNGIGVPFPGPKTLRG 138

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWIS 198
           G+ L     +    + L  +     +   ++K       +       LT  E E L  ++
Sbjct: 139 GIALATSVRKARPMENLDVLAAYCHHFYAVYKRLVPPGLRLSPAAASLTRTEQEVLFRLA 198

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +++ IA  L I   +V+ ++ +I RK     R+ A    +    +
Sbjct: 199 HGLSNEIIADRLSIKAGSVDFHVQNIFRKFGVNNRTAAAMKGLMGGYI 246


>gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
 gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum
           DSM 20093]
          Length = 230

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 7/230 (3%)

Query: 22  FVSHLPTRSDLLARMIPLDCTV----SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            VS  P       R+  +D            +      VG +  +     +  + K D +
Sbjct: 3   GVSEHP--DTNHIRVAVVDDHEMFRAGVIATLQPAFTIVGQAGDVDSSVAMIAQTKPDVV 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +                  K  +       L   V  +  +           Y + T + 
Sbjct: 61  LLDVHVPGGEGGGGTEILTKALSYSPNTAFLALSVSDSAQDVGAVIRAGARGYVTKTINA 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
             +   +  +     +        +              DV+  ++ + L+ RE E +  
Sbjct: 121 TDLVAAIHQVSEGYAVFSPKLAGFVLSAFQGAPAAGADNDVNADEELDRLSSREQEVMRL 180

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ G T  E+A  L IS  TV  ++++++RK     RS    +A    I+
Sbjct: 181 IARGYTYREVAAELFISVKTVETHMSAVLRKLQLSNRSELTRWATVRRII 230


>gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 10/183 (5%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           VR        +D  +      +  R +            + P  +    F          
Sbjct: 39  VRRTRPDVVLMDIRMPVMDGLEATRRI-------LSGTTEAPRVIILTTFDVDQYVYAAL 91

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +        ++   + L+     ++       +       A+  +         
Sbjct: 92  TAGASGFLLKDVSPEQLVAAVRLVRAGDALLAPTITRRL---VERFASPERVAAATHRDL 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L +++ G ++ E+A    +S  TV  ++A I+ K   + R  A+  A   
Sbjct: 149 ATLTPRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLRDRVQAVVVAYET 208

Query: 244 NIV 246
            +V
Sbjct: 209 GLV 211


>gi|329946343|ref|ZP_08293910.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328527319|gb|EGF54317.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 232

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 17/229 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
              R+  +D           + +       VG +   +   D+ +    D ++       
Sbjct: 3   RPLRIALVDDQDLVRSGFRMILDAQKDMCVVGQASDGVSALDMVKATHPDIVLMDIRMPA 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L    A       +  L+         F      +       + +         +  G+ 
Sbjct: 63  LDGISATHAVLGSHPDLKVL---ILTTFDLDDYLVAAMRAGASGFLLKDATAPELLAGIR 119

Query: 146 LLFPKGRIILRDRLWEI--GLLAAYQAN-----MFKSYDVHWGKDFE-LTGREVECLTWI 197
            +     ++       +     A            +  D    +    L+ RE E +T +
Sbjct: 120 AVARGDSVVAPSTTRRLLKQWFAPSGPTGPGGLSVRRADAVHTESIGALSDREKEIVTLV 179

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               ++ EIA  L ++ +T+ +++  I+ K   + R+  I  A  + +V
Sbjct: 180 GRAMSNAEIAQHLVLAESTIKSHLNRILHKLELRDRAQLIVLAYESGLV 228


>gi|311067079|ref|YP_003972002.1| response regulator [Bacillus atrophaeus 1942]
 gi|310867596|gb|ADP31071.1| response regulator [Bacillus atrophaeus 1942]
          Length = 159

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 4/157 (2%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           AL E  + +  +          F    +  T        Y   +     ++  L L++  
Sbjct: 6   ALLEMKQRWPDMNIMLMTT---FEDTLQAATALEHGAKGYMLKSIHPREMKEALKLIYNG 62

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKTSDEIAVI 209
           G  I +     +      Q    +  D       + LT RE+E L  +S G     IA  
Sbjct: 63  GTWIDQSVATRVFEEIKRQREQLEKIDSSKESYPYGLTKREMEILEHLSNGLRYKSIAAK 122

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  TV NY + +  K     R  AI  A   NIV
Sbjct: 123 LFLSEGTVRNYCSKLYSKLDVNNREEAIKMARTENIV 159


>gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I+L  +     + +  L   ++ +  +                    G     LV   
Sbjct: 2   VRILLVDDHPGFRAGLRALLAAAEGIEVVDEAAN---------------GEQALALVGRA 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 +   +               
Sbjct: 47  QPDVVLMDLAMPGMGGIAATERLVHDH--------PHIRVIVLSMSDDDDSVFAAMRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +  +     I           +AA     F   +       ELT
Sbjct: 99  RGYVLKGARKAELVRSVQAVAEGEAIFGPA-------IAARLTGYFTERERSEPALPELT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  ++E  T+ +IA  LG+S+ TV N+++++  K     R+ AI  A    +
Sbjct: 152 RREREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVADRAHAIMRAREAGL 209


>gi|254285696|ref|ZP_04960659.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226]
 gi|150424193|gb|EDN16131.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226]
          Length = 208

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    GA    L     
Sbjct: 4   RVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGN---------------GAEAIALAHDLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 49  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + +        LT 
Sbjct: 101 GYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNREHMSNPFEALTE 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 150 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 204


>gi|262164972|ref|ZP_06032710.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223]
 gi|262027352|gb|EEY46019.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223]
          Length = 220

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       ++ L +  +    +                    GA    L     
Sbjct: 17  RVLLVDDHPLMRRGINQLLSFEEEFEVVAEAGN---------------GAEAIALAHDLQ 61

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +   E D           +   V  +  +         +
Sbjct: 62  PDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSAADIEALVKAGAD 113

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +  ++   L       +                      + D        LT 
Sbjct: 114 GYLLKDTEPDQLVTLLKQAMQGEKAFSESVER-----------YLLNRDEESNPFEALTE 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 163 REMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAATILYLER 217


>gi|268317775|ref|YP_003291494.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262335309|gb|ACY49106.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 217

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 18/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P     LA  +  +  +    +  +  E +G      +         +D  +
Sbjct: 4   RILIVDDHPLVRKGLALTLEAEPDLEVCGQAASAEEALGM-----LDEVRPDLAIVDISL 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L++ +     +    VL                           Y      V 
Sbjct: 59  PGMSGLELIKHLHA--WNPDLPVLVISR------HDEALYAERAIRAGARGYVMKIEAVD 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +   G  + ++    + +     +               L+ RE+E      
Sbjct: 111 VIVKAVRRVLAGGLYVSQEVSERLLM-----SMTGHRRTTGQSPMELLSDRELEVFELTG 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +G ++ EIA  L +S  TV +Y A I  K   +T +  + +AV+
Sbjct: 166 QGLSTREIAERLHLSVKTVESYRARIKAKLGLRTAAELMQHAVQ 209


>gi|254500728|ref|ZP_05112879.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222436799|gb|EEE43478.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 212

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 59/240 (24%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  +       +     +   +  +                    G     L   
Sbjct: 4   PIRVLLADDHALVRDGIRARLNKVPEIEVVGEATN---------------GREAVKLAHE 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +    +  S              L   ++             
Sbjct: 49  LRPDVLLMDVSMPVMNGLEAAAEVRKS--------FPEIAVLILSIYDNSEYVRGVVQAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +   G          +   A                 + L
Sbjct: 101 ARGYILKDISAPEMITAISSVASGGYYFSSAVGPTLVGTA---------TSAPIEDPYGL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + LT I++G  + E+A  LGIS  TV ++  ++  K   K  +     A    ++
Sbjct: 152 TDRERQVLTAIAKGLPNKEVAKSLGISVRTVESHRLNLREKVGNKNAAQLYKVAQDLGLL 211


>gi|185177925|pdb|3C3W|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr
 gi|185177926|pdb|3C3W|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
           Hypoxic Response Regulator Dosr
          Length = 225

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L             D  +       ++ E +       V   
Sbjct: 2   VKVFLVDDHEVVRRGLVDLL----------GADPELDVVGEAGSVAEAM-----ARVPAA 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D    +L          + +    +       
Sbjct: 47  RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLIL--------TSYTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +           +           LT
Sbjct: 99  SGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAAL-------MAKLRGAAEKQDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A   
Sbjct: 152 DQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATEL 207


>gi|92114254|ref|YP_574182.1| two component LuxR family transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91797344|gb|ABE59483.1| two component transcriptional regulator, LuxR family
           [Chromohalobacter salexigens DSM 3043]
          Length = 214

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     +  + E V G     + R        +D  +      
Sbjct: 4   VLVADDHHLVRTSIARMLDSEDGLKVIAEAVDGEEAVNMARELRPDIVLMDIRMPGIGGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R + +        V+          F                + S   ++  +   +
Sbjct: 64  EATRKI-MRGMSDIKVVI-------VTAFLEEAFAQRLMDAGAAGFISKGTELDEMVRAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F   R I  D   ++ L                    +L+ RE++    I   +   
Sbjct: 116 RAIFDGQRYISPDIAQKVVL---------SKMGTQDNPFDQLSHRELQVAMMIVNCQKVS 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S  TVN Y   I  K   ++        +R  ++
Sbjct: 167 DISDRLFLSPKTVNTYRYRIFEKLNVQSDVELTHLGLRYGLI 208


>gi|238796161|ref|ZP_04639672.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC
           43969]
 gi|238720106|gb|EEQ11911.1| hypothetical protein ymoll0001_5030 [Yersinia mollaretii ATCC
           43969]
          Length = 211

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 17/223 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   +S   R   + +   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIKNMLSAYPRYQIVGQAENGLDVYNLCRQTEPDIAIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          H         +     Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPTMKILAFTAR---HEEHYASRTLSSGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I      E+        +   S+     +   LT RE + L  I+EG  
Sbjct: 115 AIQTVAVGKRYIDPALNSEL-------MSKMSSHGNKSNQPI-LTPRERQILKLITEGAC 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 167 NRIIADRLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 209


>gi|16265098|ref|NP_437890.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|307309480|ref|ZP_07589136.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307320609|ref|ZP_07600023.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|15141237|emb|CAC49750.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|306893759|gb|EFN24531.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306900065|gb|EFN30685.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 219

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 57/220 (25%), Gaps = 19/220 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V   P   + + R +                         + +        LD  
Sbjct: 5   IRVAVVDDHPLFREGVTRSLSEIDGFEIVAE-----GGSRDEAVAIAQSLNPDVMLLDIS 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +             L+      +V      +   V     +           Y       
Sbjct: 60  MPGG---------GLNAVPAILSVAPSQKIVMLTVSEANDDVAAALKEGAKGYILKGIGA 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +      ++         +  S         ELT RE E L  +
Sbjct: 111 RALAEVIRTVASGESYVAPTLSAKLLT-----GQLANSAPAKSNLVAELTRREQEVLHLV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + G ++ +IA  L +   TV +++  IM K     R+ A 
Sbjct: 166 ASGMSNKQIARKLDLHEKTVKHHMTQIMAKLDVANRTEAA 205


>gi|297156374|gb|ADI06086.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 12/216 (5%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D     + L   +     +  + E   GA+    VR        +D  +        + 
Sbjct: 11  DDEPMVCVFLRTILGSAEDIEVVAEAHDGAAGAEAVRRHRPDVVLMDLRMPGVDGLTAIE 70

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +           +          F      +         +   T     +   + +  
Sbjct: 71  RIRE----FADPPVIVVLTT----FDADQYVLRALRAGATGFLIKTTPPEDLIGLVRVAA 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++       +   ++   +              LT RE E L  + EG ++ +I  
Sbjct: 123 EGHTVLSPAAARRLVAASSDGHSARDRARRLVES---LTEREAEVLAGLGEGLSNAQIGA 179

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L +S  T+  Y++ ++ K     R+ A   A    
Sbjct: 180 RLYLSEATIKGYVSRLLDKLGCVNRTQAGLIAHEAG 215


>gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 135

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
              +       +        Y         +   +  +     ++               
Sbjct: 6   LTSYDDDEALFSAIMAGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRR-------V 58

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               +           L  RE E L  I++G T+ +I   LG+S  TV NY++SI+ K  
Sbjct: 59  LERLRDGPHEDPAMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLG 118

Query: 230 TKTRSGAIAYAVRN 243
             +R+ A  Y ++ 
Sbjct: 119 LASRTQAAVYLMKQ 132


>gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 189

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVVGQAANGEEALKLIESLRPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R I 
Sbjct: 64  P--------CKVMILTTFARPGYFERAMKTGVHGYLLKDSPSEDLASAIRNVMKGKREIS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           ++ ++ +                 W +   L+ RE E L    EGKT++EIA +L +S  
Sbjct: 116 QELMFGL-----------------WQEQNPLSDREKEVLVLAKEGKTTNEIAKMLYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLAKLEAKNRIEAITIAEEKGWI 189


>gi|311740790|ref|ZP_07714617.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304310|gb|EFQ80386.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 219

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 68/241 (28%), Gaps = 23/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ ++L  +     + +S +    D +  +                    G       
Sbjct: 1   MSKIRVLLADDQALLVTALSTILNAQDDIEVVTTAHT---------------GNEAVTAA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +         + +           +     +    F+         A
Sbjct: 46  ISHRIDVAILDIRMPGMDGIAAAQAILSR--------VPDCRIIMLTTFNEDDLVAESIA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +     D   +   +  +     ++       +           +          
Sbjct: 98  AGAHGFLLKDADPDVLVGAVRDVAKGESVLAAKVTGPVLQTYRAAIARGELSAQERQGLS 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +T RE E L  I+ G T+ EIA  + I+  TV  +I+S++ K A + R   +  A +  
Sbjct: 158 LVTRREREVLALIARGATNGEIAREMVIADTTVKTHISSLLSKLAARDRVALVLLAQKAG 217

Query: 245 I 245
           I
Sbjct: 218 I 218


>gi|153837120|ref|ZP_01989787.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ3810]
 gi|149749537|gb|EDM60283.1| nitrate/nitrite response regulator protein NarP [Vibrio
           parahaemolyticus AQ3810]
          Length = 212

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 63/235 (26%), Gaps = 32/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  L +       +           + +                  
Sbjct: 5   KVMLVDDHPLMRRGIHQLLSFEPEFEVVAEASNGADAVAKAH-------------ELELE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +     +           +   V  +  +         +
Sbjct: 52  LDLVLLDLNMKGMSGLDTLKALRADGCE--------ARIVILTVSDSPADIEAIVRSGAD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       +   ++            A        H      LT 
Sbjct: 104 GYLLKDTEPDELVELLKQAHQGDKAYSQE-----------VAKYLSERSDHEDVFDSLTD 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  ++ G  + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 153 RETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLER 207


>gi|27525450|emb|CAD56976.1| putative regulatory protein [Citrobacter freundii]
          Length = 210

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLEKNSNIQVVLKTDDSRTAIEHLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +   +        ++   LF               
Sbjct: 49  ---PVDLVILDIELPGSDGFTLLKRIKSLQ--------EKTRVLFLSSKSESFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         D L  I  +         +       D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSDTLNFINNI---------NAQKGVLNDM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYSKLGLHTIVELIDYAKMHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LM 210


>gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 224

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 79/240 (32%), Gaps = 20/240 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E     +  + +  D    ++           +    +  GA  F L    
Sbjct: 1   MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGD--GAEAFTL---- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      + ++ + L+  +    V+                         
Sbjct: 55  ----ILVDLVMPGLPWSEGLQALRLAAPET--PVV------VLSASEDRKLVRDAVRLGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FE 185
           + +   T     +   L L+   G  +    L +  ++                      
Sbjct: 103 SGFIPKTSSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTASR 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L  + +GK++ EIA +L +S  TV  ++ +I++      R+GA+  A R  +
Sbjct: 163 LTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLGL 222


>gi|147669614|ref|YP_001214432.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270562|gb|ABQ17554.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 247

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 71/251 (28%), Gaps = 33/251 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V I L  + +     +  +      +  +   D        +  L   V  +   +  
Sbjct: 20  SPVRIFLADDHQVAREGLRKVLCSEADIEIVGEADNASDVLRLVEELKPQVVLTDIKISG 79

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D  +       +   +P                        +F   +   P        
Sbjct: 80  LDSCELSHK---LKGVYPP--------------------VKVVFLTGYEAEPYVAEALYN 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---- 181
             N + +    +  +   + ++   G +   D L  +        N         G    
Sbjct: 117 GINGFLTKDCPLELLSNAIRVVACGGSVWQGDLLESVSKNLVKFVNTKAEGRSPAGEYSS 176

Query: 182 ------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE+E L  ++ G T+ EI+V L  +  T+  Y+  IM K     R+ 
Sbjct: 177 ATVNVIPQDVLSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTL 236

Query: 236 AIAYAVRNNIV 246
           A   A +  +V
Sbjct: 237 AGIAAAKFGLV 247


>gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 222

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + L  ++ L   +             G     LV         +D  
Sbjct: 12  LRAVLADDQAVVREGLVTLLGLLPGIEVVGAA-----ADGVQALELVAEHQPDVLLVDLR 66

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    +    +                 +    +      +         + +   D 
Sbjct: 67  MPNRDGVETTELVRAQHPKTE--------VVVLTTYADDDSLLAALKAGARGFLTKDTDA 118

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   L         +  +    +       A       V   +   LT REVE L  I
Sbjct: 119 EAIARALRSAAAGQSTVDGELQRRL------VAAATSRAPVRTKELEGLTAREVEVLRLI 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G ++ EIA  L +S  TV  ++  +  K   + R+ A+A+A R  I
Sbjct: 173 AAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFAYRAGI 220


>gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 221

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 75/240 (31%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + +  ++ +    ++ L      +  +            +  +         LL+  
Sbjct: 6   PIRVAIADDNAEYRLTLADLLAYEPDIEVVAVWANGHEVLRDVEQV-----RPDVLLLDI 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            + +   L  ++ +         + +    +   V+                 +      
Sbjct: 61  TMPEVDGL-CVLKAVPLLAWRPKIVVLTMHEQSPVV-----------------LEAVRAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y      +  +   +        ++    +  +         + +      G    L
Sbjct: 103 VSGYIVKDAPMEDLLRAIREAHEGRAMVHPQVMRAV------LGEIERYAKPSDGWKDLL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ++ GK++++IA  L I+  T  N+++ I+ K     RS A+ +A R   +
Sbjct: 157 TAREFDVLCQMAAGKSNEQIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAYRERWI 216


>gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 301

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  I++  +          +   +D    +      +    +   L              
Sbjct: 78  QTRILVVDDQAVMRRGFCSMLRLADHPFAVEEAADGIQALQQFEQL-------------- 123

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++ R +   E      + +              + +      
Sbjct: 124 -RPDLVLLDVGLPGVSGIEVARRIHSLE-----PLAKILMVSEL-----EEDFLQAFRVD 172

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                  + +   +   + L+     +  +  +  +    AY     +           L
Sbjct: 173 ARGCLLKSVEAQELLNAVGLVLSGYLVFGKAIVR-LIFEHAYLPEEPRKPGKLA---ISL 228

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I++  T+ EIA  L IS  TV+++ A +M+K  T+  +G +  AV+  ++
Sbjct: 229 TKREQEILGLIAQEYTNSEIAKHLYISPRTVDSHRARLMQKLGTRNTAGLVRIAVQQGLL 288


>gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium
           UCYN-A]
 gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family
           [cyanobacterium UCYN-A]
          Length = 233

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 14/226 (6%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVRC 89
             ++ +D   S    + A  EY G     +        + L      I+ SD     +  
Sbjct: 5   PVILLVDDEPSVCDSIQAYLEYNGDLIVKIANNAKEAWKLLETTIPDIIISDVMMPEIDG 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               E+ ++ N LQ    +F        + I       + Y    FD   +   +     
Sbjct: 65  YQFLERIRHNNRLQTIPLIFLTARGMTADRIKGYNAGCDAYLPKPFDPEELEAIVKSFLE 124

Query: 150 KG---------RIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISE 199
           +           + L +   EI  L            V       +LT RE   L  ++E
Sbjct: 125 RRKINEKIGNNSVKLEEIAQEIKGLKEQLGQQKTHLTVIPPSIKIDLTPREKSVLDLVAE 184

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++ +
Sbjct: 185 GLMNKEIAARLNTSVRNVEKYVSRLFGKTETNSRTELVRFALKHGL 230


>gi|254381952|ref|ZP_04997315.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340860|gb|EDX21826.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 228

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 68/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + ++ L   ++ +  +                    G     L R  
Sbjct: 4   LRVLIADDNPVVRAGLTALLATAEGIEVIAQAAD---------------GGEALHLTRLH 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +           ++    L                   
Sbjct: 49  TPDVILLDVRMPGVDGISALPHL-----------VRLAPVLMLTYSRETEVVREALLLGA 97

Query: 128 NRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK---- 182
             Y     F    +   +  +      +       +       ++  ++      +    
Sbjct: 98  GGYLVHGEFTPELLVTAVHDVHAGRPHLSPTAAGTLLSDLRASSHPQRTVAQSSQRLPNH 157

Query: 183 -DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             F L+ RE E +  I+ G ++ +IA    IS  TV N+I  I  K  + TRS AIA 
Sbjct: 158 IAFGLSSREEEVMDLIASGMSNQQIAATCFISEKTVKNHINRIFAKLQSTTRSEAIAR 215


>gi|307330274|ref|ZP_07609421.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884071|gb|EFN15110.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 233

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  ++    + +  + +    L  +                    GA    +VR  
Sbjct: 15  LRIVLVDDERMVRTALRAILSSEPDLEVVGEAGS---------------GAEAVPVVREL 59

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +           P  +    F              
Sbjct: 60  RPDVVLMDVRMPDVDGIRATERILST---MADP----PRVIVVTTFENDSYVYDALRAGA 112

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   + L+     ++    +  +    A      +        +  L+
Sbjct: 113 SGFLLKRARAEDLVQAVRLVARSDSLLFPAAVRALAAEHAAARGPDREASARALGE-RLS 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  +++G ++ EIA  + +   TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 172 EREAVVLRLMTDGLSNSEIAARMAVGPATVKTHVGAVLTKLGVRDRTQAVIAAYESGFV 230


>gi|253699733|ref|YP_003020922.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251774583|gb|ACT17164.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 216

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L  R   L+ +   D                G     L    
Sbjct: 2   IKVMVVDDHSIVREGIRILLERFPDLSVVAEADN---------------GRKASELAADL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  + +  +        ++                        
Sbjct: 47  APHVVLMDMTMPGLNGIDATQRLLAA-----CPEVRVLILSM---HKDKRFVSQAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFEL 186
             Y       A +   +  +      +        G++     +   +  +     +  L
Sbjct: 99  RGYLLKDCASAELVQAVRQVACGEMYVCH------GIIGVVVHDYVTRLPESLTQPEVPL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+EG  +   A  L I+  TV+ +   IM+K   ++ +    YA+R  ++
Sbjct: 153 TPREREVLQLIAEGNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELTKYAIREGLI 212


>gi|187920274|ref|YP_001889305.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187718712|gb|ACD19935.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 215

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 21/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R           D L  ++                   G+S   LVR    +   LD  +
Sbjct: 3   RVLIADDHALVRDGLRHILQSTSGFEVAGEA-----SDGSSTIALVRSRPAEVLVLDLSM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L+R +           +     L   +       +       + Y +     A
Sbjct: 58  PGRNGVELIRQIKDE--------MPALRILVLTMHAEQQYAVRAFKAGASGYLTKESASA 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G  +                +              L+ RE +    I 
Sbjct: 110 ELVSAVSKVASGGVYVSLAMAERFAQSLNEPGDAL--------PHQRLSDREFDVFRRIV 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 162 AGQTLTEIATELCVSSKTVSTYKTRILEKMQMPHEAALVRYALRHKLL 209


>gi|332662977|ref|YP_004445765.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331791|gb|AEE48892.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 16/178 (8%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      D ++ +            +   +     F               
Sbjct: 67  PDVVLMDIEMPGISGLDAMKLIKAE-----CPNTKVMIQTQ---FEDDHRLFVALCRGAW 118

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            Y   +  + RI   ++ +   G             +A   A  F+  ++    DF  LT
Sbjct: 119 GYALKSDSLERIETAILDVHHGGGYFSPA-------IAGKVARFFQEKELKADPDFCNLT 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L ++  GK   EIA  + IS   V++++  +  K    ++S AI  A+   +
Sbjct: 172 ARELEVLKYLVNGKRYQEIANAMFISYEGVHSHVKKVYEKLHVNSKSEAIIKAIDAKL 229


>gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 228

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 14/232 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D QRT  V+ +    D       L   +     +  + E               +E ++
Sbjct: 9   RDAQRT--VTRILLADDHALVRRGLRLILDAEPDLTVVAEA----ADGAEAVAAAREGEV 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       +    A  E  +    ++         +              + Y   +
Sbjct: 63  DLAILDIAMPRMTGIQAAREISRRAPGIRILMLSM---YDNEQYFFESLKAGASGYVLKS 119

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +             +    +  +      +A   +        D  LT RE E +
Sbjct: 120 VADRDLLEACRAAMRGEPFLYPGAVTALIRDYLARARRGERV-----PDSVLTPREEEIV 174

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I+EG +S EIA  L IS  TV+ + A+++ K   + R     YA+R  +V
Sbjct: 175 KLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMRDRLELTRYAIRAGLV 226


>gi|167622824|ref|YP_001673118.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352846|gb|ABZ75459.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 211

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              +   P     + +++  D   +      +     G      V  +      LD  + 
Sbjct: 7   VLVIDDHPLLRRGICQLVTSDSDFTLFGEAGS-----GLDALSAVSDNEPDIILLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  +                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNALRQEGVT--------SRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I       +        +   S          LT RE+E L  ++E
Sbjct: 114 LLDMLKNAMLGHRVISNTVQEYL--------SELNSSVNEQEWIENLTPRELEILQHLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+++  +A  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GQSNRIVAEQLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|302867540|ref|YP_003836177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506060|ref|YP_004084947.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570399|gb|ADL46601.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412679|gb|ADU10796.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 215

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +      +  +      V    +   L               
Sbjct: 3   IRVLLADDQAMVRGGLRLILEDQPDITVVAEAADGVDAVAQARRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       + R +A  E      V      +    F           G  
Sbjct: 48  RPDVCLVDIRMPRLDGLQVTRALAGPE------VADPLRVVVVTTFDLDEYVYGALRGGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A +   +   +    ++       +        ++         +   L+
Sbjct: 102 AGFLLKDAGPALLVEAVRAAYQGDALVSPSVTVRL------LRHLTPPAPPRDERRPALS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I+ G+T+ EI   L IS +TV ++++++  K   + R+    +A  + +V
Sbjct: 156 EREIEVVREIARGRTNLEIGAELFISLSTVKSHVSAVQTKLGLRNRTEIAVWAWEHRVV 214


>gi|239981109|ref|ZP_04703633.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291452977|ref|ZP_06592367.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355926|gb|EFE82828.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 224

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L+ ++  +  V             GA    L    +     LD  
Sbjct: 2   IRVLLADDQPLVRAGLSALLNAEKDVEVVGVA-----ADGAEALDLATELVPDVACLDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D+   +   +      VL          F                +     D 
Sbjct: 57  MPKMDGIDVAARICGPDASPAVPVL------ILTTFDIDDYVFRALEAGVAGFLLKDSDP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +      + R     I  +A Y                 LT RE + L  +
Sbjct: 111 EEILRAIHHIAAGHGTLDRTLTRRI--VAEYVERRRLRPVTATRGIDVLTARERDILLLL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++++IA  L +   TV +++A ++ K   ++R  A  +A +N +V
Sbjct: 169 AQGMSNEQIAGALVVEVTTVKSHLARMLPKLGVQSRLQAAVWAYQNRVV 217


>gi|325066389|ref|ZP_08125062.1| two component LuxR family transcriptional regulator [Actinomyces
           oris K20]
          Length = 234

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 32/252 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I +  +D      ++ L +R+D +                ++                
Sbjct: 2   ISIGIADDDALVRQTLTDLLSRNDDIVVAWTAKDGQEALDLFHSS-----------EVES 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +       L + +   +       +          F          A   
Sbjct: 51  RVQAVLVDVQMPKMDGLALAQALLEEK-----PDIAIL---ILTTFTADSIVDEAMALGV 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------------MFK 174
             + +     + +   +        ++       I   A   A+               +
Sbjct: 103 RGFVAKEDGASSLAGAIHQAVAGNLVLSPTSSAIISDQARLWASGSSRPSESIPVPTHAQ 162

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE E LT + + KT+ +IA  L +S  TV  ++++I+ K   + R 
Sbjct: 163 QPPSPLPHGVTLSEREREVLTLVVDAKTNKQIATRLRVSEATVKTHVSAIIAKLGVQDRV 222

Query: 235 GAIAYAVRNNIV 246
           GA  YA+++N+V
Sbjct: 223 GAAVYALQHNLV 234


>gi|42527826|ref|NP_972924.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
 gi|41818654|gb|AAS12843.1| DNA-binding response regulator [Treponema denticola ATCC 35405]
          Length = 217

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 20/224 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           R+  +D        +  + +             G     +      +   +D  +     
Sbjct: 2   RIAIVDDEKLICEGLKIIFQSYPDIEVIATGSNGNDALKICEEKNPELLLMDIRMPECNG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + +  S  D           L    F+             + Y         I  G
Sbjct: 62  VEATKKIKKSFSDI--------KILILTTFNDTEYIQKALQYGASGYLLKDSSPDVIYDG 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +        +I  +    +                     +F L+ +E+E +  +SEG +
Sbjct: 114 IKAAISGNIVINPEVAKTMLFENHEEAEERVIRPLAEIQDEFGLSQKEIEIIRLVSEGLS 173

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA   G+S  T+ N I+ I  KT    R+   A+A +N IV
Sbjct: 174 NKQIAYKQGLSEGTIKNNISVIFDKTFVSDRTQLAAFAFKNGIV 217


>gi|85059257|ref|YP_454959.1| putative two-component response regulator [Sodalis glossinidius
           str. 'morsitans']
 gi|84779777|dbj|BAE74554.1| putative two-component response regulator [Sodalis glossinidius
           str. 'morsitans']
          Length = 211

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 65/237 (27%), Gaps = 32/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  + E   + + +L         +  +D                G + +   R   
Sbjct: 5   KILLVDDHELIINGIINLLEPYPRFKIVAHIDD---------------GLAVYNQCRIHE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      DL+  +                 L           +   A    
Sbjct: 50  PDILVLDLGLPGINGLDLIPQLRSRWPQMS--------ILAYTAHTEEYMAVRTLAAGAL 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +      I      E+   A       +           LT 
Sbjct: 102 GYVLKNSRQQVLLAALQTVAVNKSYIDPALNREMIHTALSMEAENQEL---------LTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  I++G T+  IA  L IS  TV  +  +IMRK      +  +  + R  +
Sbjct: 153 RERQILKLIADGYTNRLIAEQLCISVKTVETHRLNIMRKLNVHKVTELLNCSRRLGL 209


>gi|299137407|ref|ZP_07030589.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600812|gb|EFI56968.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 206

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 66/242 (27%), Gaps = 38/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + ++   +       ++ +      +A +                            
Sbjct: 1   MKTIKVLTVDDHPLLREGIAAVIQGEPDMALVGEATNGQEAIESFR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      D +  +                 +    +    + +    
Sbjct: 47  -LHHPDVTLMDIQMPRMNGIDAMIAIRSE--------FPNARFIVLTTYQGDVQALRAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +    RII      ++                    D 
Sbjct: 98  AGAAGYLLKNMLRKDLLDTIRAVHAGKRIIPPVIAADLV---------------EHLADD 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++ G ++  +A  L +S  TV  ++ SI+ K   + R+ A+  A++  
Sbjct: 143 ALSEREIEVLRSVASGNSNKLVAEQLAVSEATVKGHMKSILSKLGAQDRTHAVTIALKRG 202

Query: 245 IV 246
            +
Sbjct: 203 FI 204


>gi|294102196|ref|YP_003554054.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
 gi|293617176|gb|ADE57330.1| two component transcriptional regulator, LuxR family
           [Aminobacterium colombiense DSM 12261]
          Length = 225

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +VL  +       +  +    D +  +                    G     +V
Sbjct: 1   MKKITVVLADDHSLFRESIRKILDMEDDIEVVGEARD---------------GLEAIDVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +      ++V  +           +               +      
Sbjct: 46  KKTAPHVVMLDIRMPRADGIEVVTTLRKEG--CKSAFV------VITALDAENQITRVSR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   +  +A +   L  +    R +         L+A+     F  +     K  
Sbjct: 98  AGIEGYVLKSSGLAELLYALRTVASGERYVDP-------LIASKLLKSFSPHAEFKSKIE 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E E L W+S G +S E+   + +S  TV N++  I++K   + +S AIA A +  
Sbjct: 151 TLTIKEKEVLYWVSHGLSSREVGRRMILSNKTVQNHMCQILKKLDVQEKSQAIALAWKWG 210

Query: 245 I 245
           +
Sbjct: 211 L 211


>gi|222870082|gb|EEF07213.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 17/232 (7%)

Query: 13  NREDEQRT-SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  D   T S  + +    D       +   ++    +  + E       L         
Sbjct: 103 HDADPAVTTSSAARVLLIDDHALVRDGMRMHLTLQPGLEVVGEADDGEAALAWLAAAEAG 162

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +  D +++      +            Y  L             L             Y 
Sbjct: 163 RMPDLVITDIGMRGMGGIALAGALHDRYPELAVLIVSM---HDNLEYVRQAIRAGARGYV 219

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +              +   A    +              LT RE 
Sbjct: 220 LKDAPADELLAAIQAVLAGRVFYSARIARGMAAQAVSPLDA-------------LTPRER 266

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L  I  G+ + +IAV LG+S  TV  +  ++ RK   + R+  + YAV+ 
Sbjct: 267 DILHGIGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 318


>gi|113969889|ref|YP_733682.1| response regulator [Shewanella sp. MR-4]
 gi|117920056|ref|YP_869248.1| response regulator [Shewanella sp. ANA-3]
 gi|113884573|gb|ABI38625.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
 gi|117612388|gb|ABK47842.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 214

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISIYLVDDHELVRTGIRRILEDERGIKVVGEAPD---------------GETAVQWARQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   V    P          
Sbjct: 47  EADVILMDMNMPGMGGLEATRKILRYQ--------PHAKIIVLTVHTEDPFPSKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L     A+              L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPADE--------NPFKALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 209


>gi|322514959|ref|ZP_08067972.1| DNA-binding response regulator [Actinobacillus ureae ATCC 25976]
 gi|322119067|gb|EFX91227.1| DNA-binding response regulator [Actinobacillus ureae ATCC 25976]
          Length = 199

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 60/227 (26%), Gaps = 29/227 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +          ++++ L+  +       +  E       L +         LD  
Sbjct: 2   IRVVLIDDHTIVRSGFSQLLSLEQDIQVVGEFSSAQEAC-----LKMPSIKPDVCILDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +   +L++ +                 +   V  +              Y S   + 
Sbjct: 57  MPDENGLELLKDL---------PSAIHC--IMLSVNDSAVIIRKALELGAKGYLSKRCNP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + +   +  +   G  ++ +   ++                       LT RE E    +
Sbjct: 106 SELIQAVRTVCSGGVYLMPELTTKL-------------VSSKLSLTRNLTKREYEICELL 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G  + EIA  L +S  T+  +  + M K   K          +  
Sbjct: 153 ILGLDTKEIAEKLSLSVKTIYVHRDNAMSKLNVKNNVELAKLFHQQG 199


>gi|296118498|ref|ZP_06837076.1| DNA-binding response regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968397|gb|EFG81644.1| DNA-binding response regulator, LuxR family [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 206

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  +    D +  +                               
Sbjct: 3   IKVMLIDDHPVVRAGLRAILDSFDDIEVVAEGRSGKDVERLFAP-------------ESL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         R +  +              L    + T  + I       
Sbjct: 50  AVDVVVCDIQMPGMDGISATRRVRDAGGPP---------VLILTTYDTEADIIAAVEAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   ++      R +  +    +              +        L+
Sbjct: 101 LGYLLKDSPEQVLHDAVVATVEGRRTLSPEVAGLLA-------------ERVGRPQQSLS 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ ++A  + IS  TV  ++  I +K     R+ A+  A    ++
Sbjct: 148 AREIEILQALATGASNKQLAKQMFISEATVKTHLIHIYQKLGVDNRTAAVTVARERKLI 206


>gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
 gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 244

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 18/229 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++              +      +H L +  +   E      +   +             
Sbjct: 13  IVEYRGCADPQQFFALMRRTFDIAHLLYLEAEPTAEGLKVCRLHHTFGAYAEELYLSRGL 72

Query: 96  DKYYNVLQRPTELFCPVFHT-----------LPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +L+       PV              L E                   A     L
Sbjct: 73  HRIDPILRLALGGVRPVEWATARRRFPECEPLYEAAEDIGLSTEGVALPLPSPAGRMALL 132

Query: 145 MLLF----PKGRIILRDRLWEIGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWI 197
            +      P+     R  L +  L A             D    +D  LT RE E LTW 
Sbjct: 133 AISANMSPPEWAEYRRCHLRDFQLAANLFHASMLEQAMADAIDDRDTRLTSRETEVLTWS 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK+  EIA ILGIS  TV  ++++  RK    + + A+A AVR+ ++
Sbjct: 193 AAGKSYWEIATILGISERTVRFFMSNARRKLNVVSNTQAVAQAVRHALI 241


>gi|184201279|ref|YP_001855486.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581509|dbj|BAG29980.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 207

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 64/239 (26%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +     + +  +      +                 A  E +G          
Sbjct: 3   TRVLLVDDHPVVRAGLRAVLESLGDITVCAEAQDG-------RAALERLG---------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             ++  +D +V        +  +  + +                 + T  + +       
Sbjct: 46  -TEDHGVDVVVMDLQMGRGMGGLEATRRIVASGGPPVL---ILTTYDTQADVVAALEAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +        ++       +                       L+
Sbjct: 102 TGYLLKDAQPETIGQAVHDAAAGRPVLSPSVTARL-------------MTQVRTPAASLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++  +A  L IS  TV  ++  I  K     R+ A++ A   +++
Sbjct: 149 PREIEILRGLATGASNRALAKSLFISEATVKTHLVHIYDKLGVDNRTAAVSRAREEHVI 207


>gi|168180051|ref|ZP_02614715.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
 gi|182669120|gb|EDT81096.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           NCTC 2916]
          Length = 217

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + NI++  +++     +  + +  + +  +                    G     L 
Sbjct: 1   MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGD---------------GREALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIKEQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTY---EKELNDDDISLKY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 IV 246
           IV
Sbjct: 215 IV 216


>gi|217974804|ref|YP_002359555.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217499939|gb|ACK48132.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 209

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 63/220 (28%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   S            G      V  D      LD  + 
Sbjct: 7   VLVVDDHPLLRKGICQLIASDPDFSLFGEAGG-----GLDALTAVATDEPDIILLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  M                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNAMRQEGVT--------SRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I  +    +           K           LT RE++ L  ++E
Sbjct: 114 LLEKLKNAMLGHRVISDEVEEYLY--------ELKDATDEQEWISSLTPRELQILEQLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 200

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 26/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  L   +     M  + + + G      +         +D  +     
Sbjct: 3   RLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALEAILKLEPDVCIMDIEMPVRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D+                     +    F              + Y     ++  +   
Sbjct: 63  LDVAEEFMQKGC--------GSKVIILTTFARPGYFERAVKAGVHGYLLKDGEIDDLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +       R+   +  + +                    +  LT RE E L   + GKT+
Sbjct: 115 IRKCVKGKRVFSPELTFNM-----------------MRDENPLTVREQEILRLAALGKTT 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I + L +S+ TV NYI+ I++K   K R+ A + A     +
Sbjct: 158 KDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIAEEKGWI 200


>gi|223940662|ref|ZP_03632503.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223890674|gb|EEF57194.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 241

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 70/242 (28%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +       +  +      L      +       ++               
Sbjct: 30  VSPLRILIVDDHAIIRQGLKQILAGEFGLGVFGEANNGTEALEQI--------------- 74

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
               +    LD  +      D+++ +  ++       +        P        +    
Sbjct: 75  WKQSWDVVLLDITMPGKSGLDVLKQIVEAQ-----PNMAVLVLSMHP---EDQYAVRVLK 126

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +   G+ +       +            +  +      
Sbjct: 127 TGAAGYITKNTASEEVVNAVKKVLAGGKYVSASLAENLAT--------SLNTPMGKAPHE 178

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + +  I+ GK+  EIA  L +S  T++ Y   IM K   KT +  I YAV   
Sbjct: 179 ILSDREYQVMRLIALGKSVKEIAFDLSLSVKTISTYRTRIMEKMKFKTNADIIRYAVHER 238

Query: 245 IV 246
           +V
Sbjct: 239 LV 240


>gi|261821062|ref|YP_003259168.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261605075|gb|ACX87561.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 209

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 72/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +    +  +  +         +         +D  + 
Sbjct: 4   VALVDDHIVVRSGFAQLLTLENDIQVVGQYASAAQAWPH-----LLKQSIDVAVIDIAMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +     +           +   ++ T     +        Y +       
Sbjct: 59  DESGLSLLNRLRQQRPNF--------RAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++   G  +  D L  I           +       +   LT RE E  + +  
Sbjct: 111 LVQAVRVVSSGGLYLCADALHAI-----------RHQQQPPKELLALTPREREIFSLLIN 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ + A+I+ K   ++    + +A+++ ++
Sbjct: 160 GISVKSIAEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206


>gi|238059874|ref|ZP_04604583.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881685|gb|EEP70513.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 217

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 14/224 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  +    D       L   +     +  +    GA     +         LD  +    
Sbjct: 1   MVRIVVVDDDALVRSGLRLILRVAPDIEVVATASGAEAIDEITRHRPDVVLLDIRMPDVD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              ++R +               T      F       T        +         +  
Sbjct: 61  GLTVLRQVRAMPHPP--------TVAMLTTFDADEYITTALRIGAAGFILKDTHPEHLAQ 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  L     ++       +           ++ +        LT RE E L  +++G +
Sbjct: 113 LVRALAAGAVVLSPKVSRTV------VDWRVENGEDAASAIARLTDREREILVHVADGLS 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI   + +S  TV +++++I+ K    +R  A   A R  ++
Sbjct: 167 NAEIGTRMYLSGGTVKDHVSAILTKLKVTSRVQAALIAQRAGLL 210


>gi|38233207|ref|NP_938974.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199466|emb|CAE49117.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 231

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 70/252 (27%), Gaps = 36/252 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + V               +   V        + +         +   
Sbjct: 1   MKVFLVDDHSVFRAGVK------------AEISDAVDIVGEAGTVADA-----IAGINAT 43

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +VR +   +             L   V     + I+      
Sbjct: 44  DPDVVLLDVHMPDGGGVAVVRSILSQQGIGRNR-----RFLALSVSDAAEDVISVIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-------------LLAAYQANMFK 174
             Y + T   A +   +  +     +        +              + A       +
Sbjct: 99  RGYVTKTISGAELVDAIRRVHDGDAVFSPRLAGFVLDAFARPDPVGAGVVNAPESDRAVE 158

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                     + LT RE+E L  ++ G T  EIA  L IS  TV  + ++I+RKT    R
Sbjct: 159 EGKPVADPIVDALTRRELEVLKLLARGYTYKEIAAELFISVKTVETHASNILRKTQQSNR 218

Query: 234 SGAIAYAVRNNI 245
                +A  +++
Sbjct: 219 HALSRWAQSHDL 230


>gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 242

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCMAL 92
           ++ +D        +    E  G   F+ V  +      +     ++ SD         AL
Sbjct: 17  ILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYAL 76

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            EK +    L     +F        +         + Y S  FD   +   +  +  +  
Sbjct: 77  LEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYISKPFDPDELSARVKNVINRQE 136

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-----------TGREVECLTWISEGK 201
            +L++      +  +  A               L           T RE   L  ++EG 
Sbjct: 137 RLLKEAARFADIDVSKMAKQITEIKSMLTDQNPLNKENSIDIPSFTPREASVLQLVAEGL 196

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EIA  L  S   V  Y++ +  KT+T +R+  + YA+ N++V
Sbjct: 197 MNKEIARQLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLV 241


>gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 214

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 78/236 (33%), Gaps = 25/236 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQ 70
           +NR  +   + ++ +    D    +  +   +S    +  + E   G       R     
Sbjct: 1   MNRARDTSPALIT-VMAVDDHPLLLDGIKAALSEQPDIALIAEATNGREAIEQFRVHGPD 59

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      + +R +                 +    +    + ++        +
Sbjct: 60  VTLMDLQMPGMGGLEALRGILSEW--------PEARIVILTTYRGDAQAMSALKSGARGF 111

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +R  +  +    R++  +   E+   A                + +L+ RE
Sbjct: 112 MLKGMMRKELRDTIRAVHAGRRVVPAEIAMELAQHAG---------------EDDLSPRE 156

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  ++ G  + EIA  L ++  TV  ++  I+ K   K R+ A+  A++  I+
Sbjct: 157 MEVLRELARGNANREIAESLSVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 212


>gi|323132148|gb|ADX19578.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 217

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 30/224 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLD 75
            RT  +  +    D L         +     +  + E  G+    L        Q    D
Sbjct: 17  IRTEPMITVALIDDHLIVRSGFAQLLGLEPDLQVVAE-FGSGREALAGLPGRGVQVCICD 75

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +L+  +            +    +   V  +              + S   
Sbjct: 76  ISMPDISGLELLSQLP-----------KGMATIVLSVHDSPALVEQALNAGARGFLSKRC 124

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   G  +  D   ++                  G+   LT RE +   
Sbjct: 125 SPDELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVAE 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +++G    EIA  LG+S  TV+ + A+++ K            
Sbjct: 169 KLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAHR 212


>gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 226

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 79/242 (32%), Gaps = 26/242 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ +V+  +     + +  +    + +  +                    G +   LV 
Sbjct: 3   EKIRVVIADDHPVVRTGLRMMLGMEERIELVGEAVD---------------GVAAIHLVS 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +     +D  + +    + +  +                 +    +      +     
Sbjct: 48  ELVPDVVVMDVRMPAMDGLEAIEQIRAQ--------FPHIAIIVLTTYDEDELMLRSLQA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDF 184
               Y     DV  +   +        ++  + +   +   A   A+           + 
Sbjct: 100 GARGYLLKESDVEVVLQAIERAARGEMLVQPETIRRVLDYAARRSASALLPAGSIH--EV 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L+ ++ G+ + EI   LGI+R TV +Y+ S+  K    +R+ A+  A+   
Sbjct: 158 QLTEREQEVLSALAAGERNKEIGARLGITRRTVESYLNSLYAKLNVDSRAAAVMVAIERG 217

Query: 245 IV 246
           ++
Sbjct: 218 LL 219


>gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 207

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  L      +  +            + +                
Sbjct: 1   MRLFLVDDHPVVRAGLVALLGGEHDMEVVGEAADGEDALRGIAS---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++      D +  +  + + +      +        + T  + +       
Sbjct: 45  ----HEPDVVLMDLQLGDGIDGVEATRRVRELPSPPQVLV--LTTYETDADIVRAIDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  G+        ++       +                       L+
Sbjct: 99  TGYLLKACPPEELFQGIRAAARGETVLSPRVATRM-------------MRRMRDPGPALS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G  + EIA  L I+  TV  ++  I  K    TR+ A+  AV   ++
Sbjct: 146 AREVEILELLASGAGNREIARRLFITEATVKTHLVHIYGKLGVDTRTAAVTAAVERRLI 204


>gi|218671400|ref|ZP_03521070.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 223

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 41/245 (16%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPL---DCTVSWTMRMYALTEYVGASH 60
           E  ++ ++L          +  +    D +            +    ++           
Sbjct: 3   ERPKIRVLLIDNHPLVLDGLKAVLETFDHIEVAGTAGLAQTGLDIARQLQ---------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                    Q   +D  +      D +              L +   +   +  +     
Sbjct: 53  --------PQVVLMDINMPKLSGIDAIELFRNE--------LPQTRVVMLSMHDSREYIS 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +        Y         I   +  +   G          +              +   
Sbjct: 97  SSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALM------------GERVE 144

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA
Sbjct: 145 EGSDPLTPRERDTLGLIVAGRSNREIAEVLGISSATAETHRKNLKKKLGIATTAGLIRYA 204

Query: 241 VRNNI 245
           + + I
Sbjct: 205 LDHGI 209


>gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 219

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 79/220 (35%), Gaps = 16/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            HL    D    ++ +   + +       T   G     ++  ++      D ++     
Sbjct: 13  KHLLLVDDDPNLVLLVKDYLEFQGY-DVTTAENGKEALEILTKEIPDMIICDVMMPEMDG 71

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + L+  +    +  +  V+    +          + +       + Y    F+   +   
Sbjct: 72  YSLIEKVRQDARTSWVPVMFLSAKGQS------QDRVKGLNTGADVYMVKPFEPEELVAQ 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +     +   +    +   G ++   +N           + ELT  E + +  +++G ++
Sbjct: 126 VESSLKQASRL----MRHKGNISLDDSNRI-----QVPSNVELTPTETKVVQLVAQGLSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++A  L +S+ T+ +++++++ KT    R+    +A+ N
Sbjct: 177 RDVAEKLSVSQRTIESHVSNMLNKTNLHNRTELARWAIEN 216


>gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 243

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 64/225 (28%), Gaps = 17/225 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +            +  L    G SH   +         L     + +P         
Sbjct: 11  LRTLQSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGRSGLYPDYCTTYPGKWTEIYVD 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITP-----------PAGMDNRYCSLTFDVARIR 141
                   V+      F PV  +  +  +                 +            R
Sbjct: 71  KRYFDIDPVIDVIRWGFLPVDWSSLDRRSAQAYRLFKEARSYDIGPHGLTIPIRGSKGER 130

Query: 142 IGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLT 195
               +           +    + E+ +L+ Y      S       G+   L+ RE +CL 
Sbjct: 131 CLFSVSSNLPKRDWSRLRASSIHELQILSHYLHETTLSASGLREVGRYRTLSRRETQCLQ 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ G+ S +IA  LGIS N V  Y+ S   K    T   A+A A
Sbjct: 191 LLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235


>gi|148379355|ref|YP_001253896.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153934107|ref|YP_001383731.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937750|ref|YP_001387280.1| LuxR family DNA-binding response regulator [Clostridium botulinum A
           str. Hall]
 gi|148288839|emb|CAL82923.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152930151|gb|ABS35651.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933664|gb|ABS39163.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A str. Hall]
 gi|322805695|emb|CBZ03260.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 217

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + NI++  +++     +  + +  + +  +                    G     L 
Sbjct: 1   MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGD---------------GREALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIKEQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTY---EKELNDDDISLRY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 IV 246
           IV
Sbjct: 215 IV 216


>gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp.
           DK17]
 gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1]
 gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 212

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 69/239 (28%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L    + L  +                    GA+   L R  
Sbjct: 8   IRILVVDDHPIVRGGVELLAREDENLEVVGGALT---------------GAAAVELARTL 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+  +          V      L    F              
Sbjct: 53  PVDVILLDLRLPDIPAPELIPRLRR--------VAPHARILLFTAFADHGAIDLLMEAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +               +  +    R++         ++ +                  LT
Sbjct: 105 DGCLVKDISGQDFATAIHRVSGGIRVVDPRLAGSRRVVTSEALYRA-----------GLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L + + G ++ EIA  L ++RNTV  Y+ S M+K   + R  AIA A    ++
Sbjct: 154 RREYEVLRFAAMGNSNPEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARAHELRLL 212


>gi|297538155|ref|YP_003673924.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257502|gb|ADI29347.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 215

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +     + +  +   +D +  +   +                      L   
Sbjct: 6   KIKVIIADDHAILRAGLKQILAETDDIEVISEAENAAEAIK---------------LGCM 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D ++ +                 L   ++      +      
Sbjct: 51  PGADVILMDIAMPDRSGMDALKYIKHVNHHI--------AVLMLSMYKEDQYAVRALKSG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       + +   + ++    + I  +                   +        L
Sbjct: 103 AAGYVCKQTASSELVNAIRIVAKGKKYISPEV--------GEILANQVGMETEKAPHESL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + +T I+ G T  EIA  L +S  T++ Y   ++ K   +  +    YA++N++V
Sbjct: 155 SDREFQTMTLIASGFTVGEIAEKLALSVKTISMYRTRMLEKLNLRHNAELTHYAIKNHLV 214


>gi|108757533|ref|YP_632250.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108461413|gb|ABF86598.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 246

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 73/244 (29%), Gaps = 21/244 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKL 74
           + V           R+  ++           L       + +G +       +   +   
Sbjct: 4   APVDAPQPPDSPPIRVFVVEDQTKILKNQLRLFENHPEMDIIGTALSGEAALEEVPKLMP 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++       +       E    +  ++        +F    + +       + Y    
Sbjct: 64  DVLLLDLGLPRMSGIDVTREVKARFPKIEILIF---TIFDEEDKVLEAVKAGASGYLLKG 120

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---------- 184
             V +I   +  +   G +I  +    +      + +           +           
Sbjct: 121 APVDKIIEAIKEVRAGGTVIQPNLARRLLRHFRVEPDASPLISPPAAPEPSASDLPQEPL 180

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E L  I++G ++ E A +L +S+ T+  ++  I RK     R  A+   +R
Sbjct: 181 LKPLSDREREILQLIAKGVSNSEAARLLDLSKATIRTHLEHIYRKLEVTNRVEAVTEGIR 240

Query: 243 NNIV 246
             ++
Sbjct: 241 KGLI 244


>gi|302519506|ref|ZP_07271848.1| two component system response regulator [Streptomyces sp. SPB78]
 gi|302428401|gb|EFL00217.1| two component system response regulator [Streptomyces sp. SPB78]
          Length = 221

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R           + LA ++ L   +             G      V         +D
Sbjct: 9   RPLRVVVADDQAAVREPLAAVLGLAEDIDVVAAA-----ADGNGVLEAVAAGPVDVVLMD 63

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R ++                +    F      +         Y +   
Sbjct: 64  LRMPVLDGIETTRRLSEEH--------PGVAVVVLTTFADDDSILAALGAGARGYLTKNA 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   +        ++ R+    +           +      G   +LT RE E LT
Sbjct: 116 GRQDIVRAIRAAAAGQSVLDREVQDRL-----LATVRARPTTSGQGLPADLTPREREVLT 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I +G  +  IA  L +S  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 171 LIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 220


>gi|237728994|ref|ZP_04559475.1| DNA-binding transcriptional activator UhpA [Citrobacter sp. 30_2]
 gi|226909616|gb|EEH95534.1| DNA-binding transcriptional activator UhpA [Citrobacter sp. 30_2]
          Length = 197

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 61/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G+     +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GSEALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMAIIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|295095310|emb|CBK84400.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 197

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 61/219 (27%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+          +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLNLEPDFQVVAEFGS-----GREALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  LSGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVRTVSTGGCYLTPDIAIKLA----------------AGRQDPLTRRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  EIAV LG+S  TV+ + A++M K            
Sbjct: 153 MSVKEIAVELGLSPKTVHVHRANLMEKLNVSNDVELARR 191


>gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
 gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
          Length = 245

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWD---LFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +D        + A  E  G      V  +      +Q L  +V SD     +    L +K
Sbjct: 24  VDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDGYGLLQK 83

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
            +    L     +F        +         + Y    FD   +   +  +  + + +L
Sbjct: 84  LRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQQRLL 143

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----------TGREVECLTWISEGKTSDE 205
           ++            A           +   L          T RE   L  ++EG  + E
Sbjct: 144 QEAARFADTDMGQMAKQITEIRSLLAQAEALPSTEPVVHSFTPREASVLQLVAEGLMNKE 203

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L  S   V  Y++ +  KT T +R+  + YA+ + +V
Sbjct: 204 IARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLV 244


>gi|227115196|ref|ZP_03828852.1| two-component system response regulator protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 209

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 72/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +    +  +  +         +         +D  + 
Sbjct: 4   VALVDDHIVVRSGFAQLLTLENDIQVVGQYASAAQAWPH-----LLKQPIDVAVIDIAMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +     +           +   ++ T     +        Y +       
Sbjct: 59  DESGLSLLTRLRQQRPNF--------RAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++   G  +  D L  I           +       +   LT RE E  + +  
Sbjct: 111 LVQAVRVVSSGGLYLCADALHAI-----------RHQQQPPKELLALTPREREIFSLLIN 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ + A+I+ K   ++    + +A+++ ++
Sbjct: 160 GISVKSIAEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206


>gi|320334053|ref|YP_004170764.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755342|gb|ADV67099.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 225

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 18/238 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDL-- 68
           ++  + +R+  V  +    D     + L   +     +    E   G      V      
Sbjct: 1   MDDRENERSGRVIRVLVVDDQPWVRVGLRTLLDLEEGVSVAAEAASGEDAVAWVDAHPGD 60

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +    +          V+          F      +       +
Sbjct: 61  VDVVLMDVRMPGMGGVEATAQLRARSGP---PVVL------LTTFEEEDAMVGGLQAGAS 111

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     DV  +R  ++ +    R +       +    +      +           LT 
Sbjct: 112 GYLLKDVDVVTLRDTIVRVARGERYVQPRVAEVLADALS------RERRGVTVTPERLTP 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I+ G  +  IA  L ++  TV  ++++I+ K     R  A+  A    ++
Sbjct: 166 RETEILALIARGLANKRIAQALTLTEGTVKVHVSNILGKLGATDRLDAVRVAREAGLL 223


>gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
 gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp.
           SM9913]
          Length = 204

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 26/225 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V         LA ++ LD  ++   +        G     L+    F    LD  + + 
Sbjct: 6   LVEDQTLVRLGLANLLNLDNAINIEAQAED-----GLQALALLAEHSFDIALLDMRMPNL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +++ M             +   L    F      +         Y     ++  + 
Sbjct: 61  DGLGVLQKMREKG--------DKTPVLIITTFEDCDVLVKALNLGARGYVLKNIELEELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R++       +                       LTG+E   L  +S G 
Sbjct: 113 SAIKQVVAGERVLQSAVTDFL-------------LKKQLSPQLCLTGKEQTVLQCLSLGM 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  IA  L  S  T+ N+++ I+ K   K R+ A+  A+ +N++
Sbjct: 160 SNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRTQAVIKAINHNLI 204


>gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
 gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter
           rodentium ICC168]
          Length = 230

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 18/217 (8%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + E    + +     +     ++  I   +            +      V+ R
Sbjct: 15  IQNELNKVFEVYKDTTYAYAIVNKKDPSQMRII---NNNPQWFDIYLERKYQFIDPVIIR 71

Query: 105 PTELFCPVFHT------------LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                   +                 N +    +   +     D     + L ++  K  
Sbjct: 72  ALSSVEDFYWENKVLLSGGYNLTRIFNESSEHNIYQGHTFPLHDYLNNLVVLSIISHKDS 131

Query: 153 IILRDRLWEIGL---LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            I         +   +  +Q  +     VH  K+  L+ RE + L W+S GKT  E+++I
Sbjct: 132 GIDMTANRSYFMHFLVQLHQKTLNLYSKVHQKKNVFLSPRERQILKWVSAGKTYAEVSLI 191

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++++ M+K        A+   +   ++
Sbjct: 192 LSITERTVKFHMSNAMKKLGVNNARHAVKLGMELRLL 228


>gi|82779201|ref|YP_405550.1| DNA-binding transcriptional activator UhpA [Shigella dysenteriae
           Sd197]
 gi|309784293|ref|ZP_07678932.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
 gi|81243349|gb|ABB64059.1| response regulator, positive activator of uhpT transcription
           [Shigella dysenteriae Sd197]
 gi|308927800|gb|EFP73268.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
          Length = 196

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 61/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIVAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|312138951|ref|YP_004006287.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311888290|emb|CBH47602.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 214

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 69/238 (28%), Gaps = 40/238 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L    D +  +   +       R+ AL               
Sbjct: 5   LTVFLVDDHEMVRRGLTQLLEADDDMRVIGQAESRAQALARIPAL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+ R +     D           L    F          A   
Sbjct: 50  HPDVVLLDVRLPDGSGIDVCRQLRADMPDLRC--------LMITAFPDERAVREAVAAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +  +     I                     +     G   ELT
Sbjct: 102 KGYLVKDIRGMQLVQAVREVGAGHEIPFP-----------------VTPTRQPGAPGELT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A R+ +
Sbjct: 145 AQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLEKLGVERRAQAAVLAARSGL 202


>gi|269959786|ref|ZP_06174165.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835540|gb|EEZ89620.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 202

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 27/220 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  ++      ++ E       + +         LD  ++
Sbjct: 4   VALVDDHVIVRSGFAQLLSLETDMNVVGEFSSVAEAR-----VGLPACKPNVVILDISMA 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                     V  +              Y S       
Sbjct: 59  DESGLTLLSEI---------PSGIACV--MLSVHDSPAMVEKSLKLGAKGYLSKRCSPDE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +      G  +  D            A    +         +LT RE E    ++ 
Sbjct: 108 LIQAVRTSASGGCYLTPD-----------IALKLATPSDKAATLTQLTRRENEVCQLLAR 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G     IA  LG+S  TV+ + A+ M K   K        
Sbjct: 157 GLDVKSIATELGLSHKTVHVHRANAMDKLGVKNNVELAKL 196


>gi|241518365|ref|YP_002978993.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862778|gb|ACS60442.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 203

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 62/238 (26%), Gaps = 37/238 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I +  +       VS   +  +    +         T               +LV
Sbjct: 1   MTAITIAIVDDHPLFREGVSRSLSEIEDFVVVGEGASADDAT---------------MLV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  + +           +   L       +   +    
Sbjct: 46  AAQRPDVVLLDVSMPGG-GIEAISEIVVRS--------PQTKVLMLTASEEVDPLVAALR 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +    R I                   K     + +  
Sbjct: 97  QGAAGYVVKGIGSRGLAEAIRTVAGGSRYISPTM-------------RSKVEKSLFDRPA 143

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            LT RE E +  ++EG ++ +I   L +   T+ +++  I+ K     R+ A     +
Sbjct: 144 SLTARETEVIELVAEGLSNKQIGRRLNLQEKTIKHHMTEILSKLGASNRTEAAIRWRQ 201


>gi|114047119|ref|YP_737669.1| response regulator [Shewanella sp. MR-7]
 gi|113888561|gb|ABI42612.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 214

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISIYLVDDHELVRTGIRRILEDERGIKVVGEAPD---------------GETAVQWARQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   V    P          
Sbjct: 47  EADVILMDMNMPGMGGLEATRKILRYQ--------PHAKIIVLTVHTEDPFPSKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L     A+              L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPAD--------DNPFKALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 209


>gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22]
 gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22]
          Length = 238

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 70/250 (28%), Gaps = 24/250 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV---------GA 58
           + ++L  +     + +  L + +D +  +               L   V         G 
Sbjct: 1   MRLLLCDDHAVVRAGLKALLSSADGIEVVGEAGTGEEALALAARLRPDVVLMDLQLGDGV 60

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
                 R    +    +S  +     +                +    P  L   +F T 
Sbjct: 61  DGVTATRRLTARPAGTESRGTESRGTEGHGTEGHGTEGHGTEGSAAPAPRVLVLTMFDTD 120

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +           Y         +   +         +          +A       +S 
Sbjct: 121 ADISRAIEAGATGYLLKAERPEELFAAIRDAASGRTTLS-------APVADRLMAQLRSP 173

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE E L  ++ G  + EIA  L IS  TV  ++  I  K   +TR+GA
Sbjct: 174 RPA------LSEREHEILGQLARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGA 227

Query: 237 IAYAVRNNIV 246
           +A A    ++
Sbjct: 228 VAVAKERRLL 237


>gi|297569017|ref|YP_003690361.1| two component transcriptional regulator, LuxR family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924932|gb|ADH85742.1| two component transcriptional regulator, LuxR family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 207

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 32/224 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRW-------------DLFQEQKLDSIVSSDW 82
           +  L+   S    +  L +  G   F +                       +D  +    
Sbjct: 3   LAILEDDFSLRENLRLLLD--GVPEFTVCGTYANGAAALAAAGTTPIDIMLVDLGLPDIS 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++R     +        +        ++    +         + Y         +  
Sbjct: 61  GVEVIRKGKELQ-----PATEFM---AYTIYEDREKVFAALKAGASGYLLKGCSPRELIE 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  L   G  +       + +        F+           L+ REVE +  + +G +
Sbjct: 113 SIQELHLGGAPMSPKIARRLIM-------EFREKGSLQQNL--LSTREVEIIREVEKGFS 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +IA  L IS +TV+++I  I  K     R  AI  A +  ++
Sbjct: 164 YKDIAAKLFISPHTVHSHIKKIYEKLHAMDRQDAILKARKCGLL 207


>gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305]
 gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305]
 gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 214

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 26/227 (11%)

Query: 22  FVSHLPTRSDLLARMIP---LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            V   P   D +  ++        V     M   ++  G                LD ++
Sbjct: 3   VVDSHPIVRDGIEVVLGKAYAGIDVDGAADMAEASDRCGRD--------RPDLVLLDVML 54

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             + P   +  +                 +      +            + Y        
Sbjct: 55  PGEDPLPAMGEILR--------AHPGLRFVVFTALGSEARAADAIRFGASGYLLKWCSPD 106

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +      I          L   +               ELT RE + L  I+
Sbjct: 107 GIVQAIRRVMAGRVHIDPS-------LDEARVASAAGGRTLASPVDELTRREKQVLKLIA 159

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G  + EIA +L IS  TV+ +   +M+K   +  +  I +A R   
Sbjct: 160 DGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYRYGY 206


>gi|306837140|ref|ZP_07470077.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304566988|gb|EFM42616.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 223

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 22/233 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V  +    D     + L   +     +    + VG            Q   +D I+
Sbjct: 8   RRDVVIRVLLADDHEIVRLGLRSVLEGAEDI----DVVGEVATAEAAVSAAQAGGIDVIL 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITPPAGMDNRYCSL 133
                   +    +    +    ++              + T  + +         Y   
Sbjct: 64  MDLRFGAGLEGTRVMGGVEATAQIRSSMSTPPKVLVITNYDTDADILGAIEAGAVGYLLK 123

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +         +       +                       LT RE+E 
Sbjct: 124 DAPPQELLDAVHSTAEGDSALSPIVADRL-------------MTRVRTPRTSLTPRELEV 170

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ +I   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 171 LQLVAAGASNRQIGHDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 223


>gi|297563287|ref|YP_003682261.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847735|gb|ADH69755.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 225

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 63/225 (28%), Gaps = 15/225 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY---VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +    D +     L   +     +  + +    V A  FL     L     +D+ +    
Sbjct: 6   VLIVDDQILMRQGLRKLLEIEEGVDVVGDAADGVEALEFLSAADPLPDVALVDARMPRMD 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L+  M        Y  +          F                Y         +  
Sbjct: 66  GVALIGRMRAE-----YPDVPAL---VLTTFDDDELVFGGLRAGARGYLLKDVPPEELVA 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH----WGKDFELTGREVECLTWIS 198
            +  +     ++       +        +   + D       G+   L+ RE E    + 
Sbjct: 118 AIRRVARGETVLGGPAAELLVAALGEGPSTVPAADPPRPPGHGEAPRLSEREEEVARLVG 177

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            G T+ E+A  L I+  T  N++ SI+RK   + R+    +    
Sbjct: 178 TGATNREVARALFITEGTAKNHVTSILRKLGLRDRTRLALWVRER 222


>gi|229589824|ref|YP_002871943.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361690|emb|CAY48571.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 219

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 63/217 (29%), Gaps = 15/217 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D       L      +     + +   G     L      Q+  LD  +    
Sbjct: 4   TTLLLIDDHPLFRKGLAQLFDASGDFEVVGQAASGREGINLAVSLTPQQVLLDLHMPGLS 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              ++  +     D           +         E +T      + Y     +   +  
Sbjct: 64  GLQVLDELRQLRLD--------CQVVVLTASPDRAELLTALRLGASGYVLKETEPDALLA 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        ++         L+A        S          LT RE + L  I+ G +
Sbjct: 116 YMRNCHKGAIVLDST------LIALLADQAEPSPSCDPIDSGNLTEREGQTLALIAAGMS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +I   LGIS  TV  Y+ S+++K    +R    A+
Sbjct: 170 NKQIGRELGISDGTVKIYVRSLLQKLGLHSRLELAAW 206


>gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri]
          Length = 222

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 17/199 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   +        +  + + +   ++L          K D  +  ++P    +    +  
Sbjct: 16  IKTCNNNKDINQCLSEIAKIIHCEYYLFAIIYPHSIIKPDVSIIDNYPEKWRKYYDDAGL 75

Query: 96  DKYYNVLQRPTELFCPVFHTLPEN------------ITPPAGMDNRYCSLTFDVARIRIG 143
            +Y  V+        P+   + E                 +G+   +       +     
Sbjct: 76  LEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNVIKEAQESGLITGFSFPIHTASNGFGM 135

Query: 144 LMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L             + L        +L +   N  K        D  LT RE ECL W S
Sbjct: 136 LSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINLTRKKSDSILTKREKECLAWAS 195

Query: 199 EGKTSDEIAVILGISRNTV 217
           EGK++ +I+ ILG S  TV
Sbjct: 196 EGKSTWDISKILGCSERTV 214


>gi|3023833|sp|P95582|GACA_PSEVI RecName: Full=Response regulator gacA; AltName: Full=Global
           activator
 gi|1743428|gb|AAB38979.1| RepB [Pseudomonas viridiflava]
          Length = 214

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|295840294|ref|ZP_06827227.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295827900|gb|EFG65696.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 231

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 62/223 (27%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA      R        LD  +     
Sbjct: 19  RVLLADDHALVRRGLRLILDAEPDLSVVAEAGDGAQALEQARLHRPDLAVLDIAMPRMTG 78

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     +   ++                Y   +     +   
Sbjct: 79  LQAAREL--------SRALPGLRMIVLTMYDNEQFFFEALGSGAGGYVLKSLADRDLIEA 130

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     +       +        +  +  +   G    LT RE E L  ++EG +S
Sbjct: 131 CRAAMRDEPFLYPGATGALI---RNYLDRARRGEDLSGGS-PLTPREEEILKLVAEGHSS 186

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA +L IS  TV  + A+ + K   K R     YA+R  +V
Sbjct: 187 KDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 229


>gi|312112457|ref|YP_003990773.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217558|gb|ADP76162.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 223

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D           +             G     ++    +    LD  +      
Sbjct: 3   HILIVDDHRLVGEGTKNILEREQDFQVELVTSGTEAEQMMEQRTYDVFLLDWRMPDMSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R +   + +    ++        P F+ L E+          + S T    ++   +
Sbjct: 63  ELSRRILQKQPNAK--IVIYTGYDVAPFFNYLIES------GITGFVSKTATSEQLITAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I    L ++ L         ++      K   L+  E E L  ++ G ++ 
Sbjct: 115 RCALRDEAVIPVHLLRQLHLC------EVRAKMEENEKQAALSRLEQEILFEVANGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA    IS+ +V  +++ I  K    +R  A+  A +  ++
Sbjct: 169 DIAKKHYISQRSVERHLSRIFTKLHVSSRVEAVEKAKQLGLI 210


>gi|126640329|ref|YP_001083313.1| response regulator [Acinetobacter baumannii ATCC 17978]
 gi|194474666|gb|ACF74452.1| response regulator [Acinetobacter baumannii]
          Length = 192

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR    Q   LD  +      +  R +  +              +        
Sbjct: 17  GEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTA--------PETKVIAVSGLAEE 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P            Y +    +A +   +  +   G+    D       +A   A+ +   
Sbjct: 69  PYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-S 120

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        L+ RE++    +    ++ EIA  L +S  TVN Y   I  K    +    
Sbjct: 121 DTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKL 180

Query: 237 IAYAVRNNIV 246
              A+R  ++
Sbjct: 181 THLAIRYGLI 190


>gi|261820885|ref|YP_003258991.1| response regulator [Pectobacterium wasabiae WPP163]
 gi|2661730|emb|CAA64809.1| expA [Pectobacterium carotovorum]
 gi|261604898|gb|ACX87384.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 218

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 35/240 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
           +++ L  + E   + +  +                      +  + E   G       R 
Sbjct: 2   ISVFLVDDHELVRAGIRRIL----------------DDIKGLKVVGEACCGEDAVKWCRS 45

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +      +  R +           +     +   ++   P         
Sbjct: 46  NDVDVVLMDMSMPGIGGLEATRKILR--------FMPDIKVIMLTIYTENPLPAKVMQAG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y S       +   +  +    R I  D   ++ L            +       E 
Sbjct: 98  AAGYVSKAAAPQEVICAIRAVHAGKRYIASDIAQQMAL---------SQLEPQTDAPLEC 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE++ +  I++G+   EI+  L +S  TVN+Y   +  K            A+++ +
Sbjct: 149 LSERELQIMLMITKGQKVTEISDQLNLSPKTVNSYRYRMFSKLNINGDVELTHLAIKHGL 208


>gi|328542441|ref|YP_004302550.1| Response regulator containing a chemotaxis protein CheY domain and
           an HTH DNA-binding domain [polymorphum gilvum
           SL003B-26A1]
 gi|326412188|gb|ADZ69251.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Polymorphum gilvum SL003B-26A1]
          Length = 216

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 58/223 (26%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   G     +    +     +D  +     
Sbjct: 11  RILLADDHELVRAGIRTRLEEVDNLLIVGEAFDGRQALEMAGSLVPDIVLMDISMPVMNG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +               + L   ++                Y         +   
Sbjct: 71  LEATEAIRRR--------YPHMSVLVLSIYDNPEYVRGVMQAGARGYLLKDISAREMINA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G          +           +       + + LT RE E L  ++ G+ +
Sbjct: 123 VTAIADGGYYFSSKVGPTL--------MEARPSCSGVDR-YGLTEREREVLQGVARGQAN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LGIS  TV ++  +I  K  +   +     A    +V
Sbjct: 174 KEIAKALGISVRTVESHRLNIRDKVGSGNAAHLYRIAQELQLV 216


>gi|256374750|ref|YP_003098410.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255919053|gb|ACU34564.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 215

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +++   S +  + + +  +  +   D                      L R  
Sbjct: 2   IKVVLADDEDLVRSGLRLILSSAGDIDVVAECDDGHLVAE---------------LARQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +      +R +                      F              
Sbjct: 47  RPHVVLLDIRMRTSDGLVALRRLRALPDPP--------KVAMLTTFDVDEYVSEALRLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     +  ++   +  L   G ++          + +  A+  ++ +        L+
Sbjct: 99  SGFLLKDTEPEQLVKAVRDLARGGAVLDPGVAAR---VLSAVADGERAAEPARRLLSSLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I +G ++ EI   L +S  TV  Y++S++ K     R  A   A R  ++
Sbjct: 156 EREREVLVLIGQGMSNAEIGGTLHLSEATVKGYVSSVLGKIGAVNRVQAALVAYRGGLI 214


>gi|94312507|ref|YP_585717.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356359|gb|ABF10448.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 228

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 17/232 (7%)

Query: 13  NREDEQRT-SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  D   T S  + +    D       +   ++    +  + E       L         
Sbjct: 5   HDADPAVTTSSAARVLLIDDHALVRDGMRMHLTLQPGLEVVGEADDGEAALAWLAAAEAG 64

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           +  D +++      +            Y  L             L             Y 
Sbjct: 65  RMPDLVITDIGMRGMGGIALAGALHDRYPELAVLIVSM---HDNLEYVRQAIRAGARGYV 121

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +              +   A    +              LT RE 
Sbjct: 122 LKDAPADELLAAIQAVLAGRVFYSARIARGMAAQAVSPLDA-------------LTPRER 168

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L  I  G+ + +IAV LG+S  TV  +  ++ RK   + R+  + YAV+ 
Sbjct: 169 DILHGIGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGIEGRAELVKYAVQQ 220


>gi|323176891|gb|EFZ62481.1| response regulator [Escherichia coli 1180]
          Length = 204

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 59/226 (26%), Gaps = 31/226 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +       V  L         +                    GAS   L          
Sbjct: 2   DDHPLMRRGVRQLLELDPGFEVVAEAGD---------------GASAIDLANRLDIDVIL 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      D +  +                 +   V     +         + Y   
Sbjct: 47  LDLNMKGMSGLDTLNALRRDGVT--------AQIIILTVSDASSDVFALIDAGADGYLLK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             D   +   +       ++        +     +                 LT RE++ 
Sbjct: 99  DSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMF--------GAEEDPFSVLTERELDV 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L  +++G ++ +IA +L IS  TV  +I +++RK   ++R  A   
Sbjct: 151 LHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATIL 196


>gi|300779182|ref|ZP_07089040.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300504692|gb|EFK35832.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 212

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 76/246 (30%), Gaps = 38/246 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E +++NIV+  +       +  +     +                        G     
Sbjct: 1   MENEKINIVIVDDHPIVIEGLRMMLNSQPVFNVAGSFAS---------------GRETIN 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN--I 120
            ++ ++     LD  +      +L R +      K                +    +  +
Sbjct: 46  CIQSEMVDIVLLDITLPDANGTELCREI-----KKISP-----NTSVIMFSNRSERSIIM 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y      +  + I +        +   +             +     D+  
Sbjct: 96  QSIQNGASGYLLKNTSIDELVICIRGALSGDIVFCNET--------KQIISRPSQNDLPV 147

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE + L  +++GKTS+ IA  L +S  TV+ +  ++++K   K  +  I  A
Sbjct: 148 AR---LTKREKQILQLVAQGKTSNMIAEELFLSPLTVDTHRKNLLQKFHAKNSTELINRA 204

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 205 MQQGMI 210


>gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 209

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 65/221 (29%), Gaps = 23/221 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV-SSDW 82
            +    D L     L   ++    +  + E   G      +         +D  + +   
Sbjct: 6   RVFLVDDHLVVRAGLRALLNTQPDVEVVGEASSGEGAATAIPSASPDLVMMDLDMGTGMH 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +     D           L    + T  + +         Y         I  
Sbjct: 66  GAEAIKRLRSDGVD--------VPVLVFTTYDTDADVVRAVDAGAIGYLLKDSTPDEIFG 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        ++       +                       LT RE E L+ ++EG T
Sbjct: 118 AVRGAVAGRSVLSPTVASRL-------------VQQMQRPQEALTARESELLSLLAEGMT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + E+   L IS  TV  ++  I  K   +TRS A++ A+R 
Sbjct: 165 NRELGKALFISEATVKTHLGHIYAKLGVETRSAAVSVALRR 205


>gi|221633529|ref|YP_002522754.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
 gi|221156816|gb|ACM05943.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
          Length = 257

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           EDE R   V       D L  ++                   G     L R        +
Sbjct: 36  EDEMRLLIVDDHALFRDGLRSLLEARGVEVVGEA------ANGREAVELARQLKPDIVLM 89

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +         R +           L     +         +           Y    
Sbjct: 90  DLTMPEVDGLTATRILVTE--------LPEVKVVVLTASDDEADLFESIKSGAYGYLLKN 141

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +       L  +     +           LA      F    VH  +   LT RE E L
Sbjct: 142 LEADEFFRALEAVQSGLPVFTPH-------LARRVLQEFGREGVHRPEGPALTERERELL 194

Query: 195 TWISEGKT-SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +G T + E+A  L IS NTV  ++ +IM K   + R+  IAYA+R  +V
Sbjct: 195 ELLVQGVTSNRELAQRLFISENTVKYHLRNIMTKLHLENRAQVIAYALRTGLV 247


>gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 215

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 65/240 (27%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              I+L  +     S +  +      L  +            +                 
Sbjct: 2   PARILLADDHALVRSGLRLIIDAEPDLQVVAEAADGHEALEALERT-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +         R +          +      L   +              
Sbjct: 48  -PTDLAILDIAMPRMTGLQAAREI--------SRMHPHVRILILSMHDNEQYFFEALKAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +     +             +    +    L+  Y     ++       D  L
Sbjct: 99  ASGYVLKSVADRDLLAACRATLRGEPFLYAGAVT--ALIRDYLH---RARSGDELPDTIL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  ++EG ++ EIA  L IS  TV+ + A+I+ K   + R     YA+R  ++
Sbjct: 154 TPREEEVLKLVAEGYSTREIAATLSISAKTVDRHRANILAKLGLRDRLALTRYAIRAGLI 213


>gi|70731557|ref|YP_261298.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345856|gb|AAY93462.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 219

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +   D        +  L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVMDIPGYAVIGEADDGSFLLEMVERL---------------H 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +R +             +   L   +       +       +
Sbjct: 49  PDIILLDLSMKHTGGLDALRRLKALH--------PQSKVLILSMHTDPALIMQALECGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +          +        +       ++  LT 
Sbjct: 101 GYLLKDTTATELEHALQALRNNERYLSPAIA---HTVINQALTRAQKQPPPPEQNHNLTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA+ LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIALGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFAVRERII 215


>gi|15894152|ref|NP_347501.1| two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|15023760|gb|AAK78841.1|AE007602_2 Two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|325508280|gb|ADZ19916.1| Two-component response regulator [Clostridium acetobutylicum EA
           2018]
          Length = 218

 Score =  108 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 25/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +V+  +++     +  +    + +  +                    G     + 
Sbjct: 1   MDNIKVVIVDDEKLVVDGLKIILETYEDIKVVGTAKN---------------GEEALRVC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +         + +            +    L    F+ +        
Sbjct: 46  RQSSPDVVLMDIRMPKCDGVLGTKLIKKE--------FKDIKILILTTFNDVKYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     D   I  G+   F    +I  +   +I  L+       +         +
Sbjct: 98  YGASGYILKDSDYELIYEGIKAAFKGNVVINPEVASKI--LSENGEYNKEQALEEVKTKY 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ +E+  +  I+ G ++ EIA  L +S  T+ N I+ I  K   + R+    +A +NN
Sbjct: 156 DLSDKEINIVREIASGLSNKEIAEKLFLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNN 215

Query: 245 IV 246
           IV
Sbjct: 216 IV 217


>gi|302542477|ref|ZP_07294819.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460095|gb|EFL23188.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 61/229 (26%), Gaps = 13/229 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
            + T     +    D  A    L   +     +  + E V G       R        +D
Sbjct: 8   PETTPAPIRVLVAEDQAAVRSGLVLILRSAPGIEVVGEAVDGEQAVARARALRPDVVLMD 67

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +         R +                 L    F                +     
Sbjct: 68  VQMPRLDGVSATRQVVAEGLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKDS 118

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D AR+   +  +     +I       +       A    +          LT RE E L 
Sbjct: 119 DAARLVEAVRTVARGEGLIAPAVTRRLI---KEFARSGTATTADPSVLAVLTPREREVLG 175

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +  G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    
Sbjct: 176 CLGRGMSNAEIATHLTMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 224


>gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 222

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 7/191 (3%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           VG +   +    + +E + D ++       +    A+++  + +  +          ++ 
Sbjct: 37  VGDAADGVAALCVIEELQPDVVLMDLRMPGMDGLEAITQIRERWPHIAIV---ILTTYNE 93

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               +         Y     D   +   +        ++  + +  I             
Sbjct: 94  DNLMLRGLRAGACGYLLKDTDRETLFHAIRAAARGDLLLQPEIMARILARTTDA----PH 149

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +  ELT RE E L  ++ G+ S EIA  LGIS  TV +++ SI  K    +R+ 
Sbjct: 150 STPSRPQAEELTERECEVLEAVARGERSKEIASRLGISLRTVGSHLTSIYSKLGVDSRAS 209

Query: 236 AIAYAVRNNIV 246
           A+A  +   ++
Sbjct: 210 AVATGIERGLL 220


>gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 225

 Score =  108 bits (270), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 15/186 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +    L Q    D  +        +  +       +         +   V     +  
Sbjct: 49  AAIRTEPLPQVVLCDVGLPGMDGITGMSAIKALSPSTH--------VIMLTVHDDPHKVY 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y         I   +  +   G  +        G +A      F   +   
Sbjct: 101 GAICAGASGYLLKDASEEAITAAIHEVLNGGAPMN-------GRIARLVLGAFAQQNSTP 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D+ L+ RE + L ++ +G    EIA  +G+S +TVNNY+  I  K    TR GA+A  
Sbjct: 154 HNDYGLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNYLRRIYDKLHVHTRGGAVAKT 213

Query: 241 VRNNIV 246
           V   ++
Sbjct: 214 VEEKLL 219


>gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   L S ++S    +L R +           ++       P    L + I   A    
Sbjct: 49  PEVVLLGSDLTSQNGLELGRKIVRVF-----PNIRVIILSPDPNDAELFDVIRTAAVAC- 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELT 187
                +    ++R  +         I    L   I              D        LT
Sbjct: 103 --VRKSTTPDQLRETIQRATRGEYPINESLLNPTIAQRVLRNFQELAEDDDGLDVVTPLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +++G T+ +IA  L IS  T+ N+I++I+RK     R+ A   A+R   +
Sbjct: 161 QRERQILIRVTDGLTNKQIATELKISEQTIKNHISAILRKLNANDRAHAAVLAIRRGYI 219


>gi|302544547|ref|ZP_07296889.1| putative two-component system response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462165|gb|EFL25258.1| putative two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 222

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 12/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     +  + +  G +    V         LD  +      
Sbjct: 3   RVAVVDDEALVRSGLRLILGTAPDIEVVADCSGGTAVETVLGSDADVVLLDIRMPD---A 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +  +          V+          F                +     D  ++   +
Sbjct: 60  DGLTVLGQLRAAPRSPVVA-----MLTTFDAQEYLTAALRAGAAGFLLKDTDPEQLVRAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   G ++         ++  Y A   ++          LT RE E L  + EG  + 
Sbjct: 115 RTLAQGGSVLDPGVTG--AVIGGYLAAEAEATAASAVDA--LTPREREVLALLGEGLANP 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  +G++ +TV +++ +++ K     R  A   A R  ++
Sbjct: 171 QIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGLI 212


>gi|206562154|ref|YP_002232917.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038194|emb|CAR54147.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L  ++                     S   L+R        LD  
Sbjct: 2   IRVLIADDHALVRDGLRHILQNASGFDVVGEAQDSA-----STIALMRDTDANVLVLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L++ +   +       L         +       +       + Y +     
Sbjct: 57  MPGRNGVELIKQIKDEK-----PGLHIL---VLTMHAEQQYAVRAFRAGASGYMTKESAS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +   G  +      +         ++             L+ RE +    +
Sbjct: 109 AELVAALTKIAAGGVYVSLTMAEQFAQSLNEPTDLL--------PHQRLSDREFDVFRRV 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G++  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 161 TTGESISEIAQALCVSVKTVSTYKTRILEKMQMPNDTALVRYAMRHKL 208


>gi|134293580|ref|YP_001117316.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134136737|gb|ABO57851.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 215

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++                   G S   LVR    Q   LD  + 
Sbjct: 4   VLIADDHTLVRDGLRHILQNATGFEVAGEA-----CDGPSTIALVRSTPAQVLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +   +             L   +       +       + Y +     A 
Sbjct: 59  GRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +      +        A               L+ RE +    I+ 
Sbjct: 111 LVGAVTKVATGGVYVSLTMAEQFAQSLNEPAETL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 163 GQTLTEIAQSLCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKLL 209


>gi|73748854|ref|YP_308093.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660570|emb|CAI83177.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 247

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 70/251 (27%), Gaps = 33/251 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V I L  + +     +  +      +  +   D        +  L   V  +   +  
Sbjct: 20  SPVRIFLADDHQVAREGLRKVLCSEADIEIVGEADNASDVLRLVEELKPQVVLTDIKISG 79

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D  +       +   +P                        +F   +   P        
Sbjct: 80  LDSCELSHK---LKGVYPP--------------------VKVVFLTGYEAEPYVTEALYN 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---- 181
             N + +    +  +   + ++   G +   D L           N         G    
Sbjct: 117 GINGFLTKDCPLELLSNAIRVVACGGSVWQGDLLESASKNFVKFVNAKAEGRSPAGEYSS 176

Query: 182 ------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE+E L  ++ G T+ EI+V L  +  T+  Y+  IM K     R+ 
Sbjct: 177 ATINVIPQDVLSPRELEILIMVARGYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTL 236

Query: 236 AIAYAVRNNIV 246
           A   A +  +V
Sbjct: 237 AGIAAAKFGLV 247


>gi|237800460|ref|ZP_04588921.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|302189906|ref|ZP_07266579.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|3023834|sp|Q52376|GACA_PSEU2 RecName: Full=Response regulator gacA; AltName: Full=Global
           activator
 gi|134252574|gb|ABO65046.1| GacA [Pseudomonas syringae pv. tabaci]
 gi|330901191|gb|EGH32610.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330950410|gb|EGH50670.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
 gi|330970023|gb|EGH70089.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330980420|gb|EGH78523.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|330988830|gb|EGH86933.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331023319|gb|EGI03376.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 214

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|83716628|ref|YP_439765.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167578207|ref|ZP_02371081.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167616344|ref|ZP_02384978.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142907|ref|ZP_05591169.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83650453|gb|ABC34517.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 215

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 65/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +          E    A+   LVR    Q   LD  +      
Sbjct: 4   VLIADDHALVRDGLRHILQNAAGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRNGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L++ +   +             L   +       +       + Y +     + +   +
Sbjct: 64  ELIKQIKEEK--------PSLRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +               A               L+ RE +    I+ G+T  
Sbjct: 116 TKVASGGVYVSLAMAERFAQSLNEPAETL--------PHHRLSDREFDVFRRIASGQTLT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 168 QIADELCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKLI 209


>gi|186681434|ref|YP_001864630.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463886|gb|ACC79687.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 239

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 74/257 (28%), Gaps = 34/257 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +       +            +            +  L            
Sbjct: 1   MSEIKILVIEDHNLTRIGLRSALQTQPEFNIVGEAANAADGIKLLKTL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R     + +      +        + ++    +   A
Sbjct: 49  ---KPDVATIDIGLPDMDGIELTRTFRQYQAENEDYTTKLL---ILTMQNSEQAVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL--------AAYQANMFKSY 176
              + YC    +  R+   +         I    + ++ L          +  A+  +  
Sbjct: 103 AGADSYCMKDIETERLVEAVRTTHAGSSWIDP-AIADLVLQQIRQDFPDGSRGASGKRVL 161

Query: 177 DVHWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                 D E       LT RE++ L  I  G  + EIA  L ++  TV  ++  I+ K  
Sbjct: 162 IEGIDPDVEKSIVSYPLTHREMDVLELIVAGCDNAEIAKRLYLTVGTVKTHVRGILNKLC 221

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R  +V
Sbjct: 222 VADRTQAAVRALRAGLV 238


>gi|256395415|ref|YP_003116979.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361641|gb|ACU75138.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 217

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R      LP   D L  ++     +         T   G    +LVR    +    D  
Sbjct: 3   IRVLICDELPIIGDGLRTLLDAVPDIEVIG-----TTDNGMEAIVLVRTARPEVVVTDLN 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    +++R +A  +      V                          +         
Sbjct: 58  LRTISGLEMIRRLAKEDTPPSIVVF--------TEADADKTVSDVLHAGVSCLLGKDARP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        ++       +  +  ++A              ELT RE E +  +
Sbjct: 110 QELIAAIQAAATGQTVLAPSIAQRL--VGWFRAQPEPQEAAMCPGASELTSREREVVRMV 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G +++E+A  L I   TV  ++  +  K   + R+  ++ A R+ ++
Sbjct: 168 ARGMSTEEVARELIIGEATVRTHVYRVRTKLGVRDRAELVSLAYRSGLI 216


>gi|91976873|ref|YP_569532.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91683329|gb|ABE39631.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 230

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 59/241 (24%), Gaps = 27/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ + L  +     S +  L   +  L  +   +       R   L             
Sbjct: 12  PRLRVFLADDHPIVLSGMKMLVAEAPELELVGEANDGPKALRRAIEL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      D+               + +   L   V             
Sbjct: 59  --RPDVAVFDLSMPGMNGIDVTEKYLD--------AIPKARVLVLSVHEDGAYLRRLLKL 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +  G+  +   G  +                    S D       E
Sbjct: 109 GVGGYILKRSATDELIRGIHAVASGGLYLDPAIAGRAIGRGVQ----KVSIDSETSPISE 164

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L   S G ++  I+  L +   +V  Y A  M K     R   I +A+    
Sbjct: 165 LSTRELEVLRLASVGHSNKVISAKLQVGSKSVETYKARAMDKLGFTNRVELIRFALSMGW 224

Query: 246 V 246
           +
Sbjct: 225 L 225


>gi|329767671|ref|ZP_08259190.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
 gi|328839021|gb|EGF88609.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341]
          Length = 199

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 68/222 (30%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +S    + ++ +   G     L+  +      LD  +      
Sbjct: 3   LLIAEDQSMLRDAMATLLSMEDSVESVLQAKDGKEAINLISTNDIDVAILDVEMPEATGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +  +              +    F  +           + Y      +  +   +
Sbjct: 63  DVLEYIRSNNI--------HCKVVIVTTFKRMGYFERAIKNNVDAYVLKDRSIDELMKTI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +    + +                 +  +     L+ +E   L  I EG ++ 
Sbjct: 115 NNVLGGNKEYSPELM-----------------ENIFTNHNPLSNQEKIILLKIKEGLSNK 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  T+ NYI++I+ K   K R+ A+  +     +
Sbjct: 158 EIANELFLSEGTIRNYISNILTKLNCKNRTEAVKKSTEEGWL 199


>gi|304408549|ref|ZP_07390170.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307305377|ref|ZP_07585125.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304352370|gb|EFM16767.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306911680|gb|EFN42105.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 214

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 17/189 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G + +            +D  +     FD++R +     +           +        
Sbjct: 43  GLAVYEKCLKLRPDLVFMDLKLPGMGGFDVIRQLRQRWPEM--------MIIMLTATVEE 94

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      N Y       + +   +  +      I                 +    
Sbjct: 95  KRAREALDVGANGYVLKNSPKSTLLAAIKCVCKGKNFIDPSLDER---------QIAALS 145

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            V  G    LT RE + L  I EG+ + +IA  L I   TV  +  ++MRK      +  
Sbjct: 146 GVVDGDMPLLTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAEL 205

Query: 237 IAYAVRNNI 245
           + +  R  +
Sbjct: 206 MHWVQRLGL 214


>gi|300933646|ref|ZP_07148902.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Corynebacterium resistens DSM
           45100]
          Length = 201

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L      LA +                    G+    LVR  
Sbjct: 2   IRVLLADDQSLVRGALAVLLDSEPDLAVVAETGS---------------GSDCAQLVREH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +A S+ +    ++          F              
Sbjct: 47  DVDVAILDIEMPGKNGIEATREIAESQLNCRCLIV--------TTFDRPGFLRQALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       A++   +  +    R++      E                  +     LT
Sbjct: 99  SGYVVKDTPAAQLAESVRRVHAGARVVDSALATE----------------ALYSPPSPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REV+    +  GK+S  IA  L +S  TV N+++S + KT    R  A   A     +
Sbjct: 143 PREVDVCREVLTGKSSANIAKALHLSEGTVRNHVSSAITKTQASNRYDAARIARDRGWL 201


>gi|167584244|ref|ZP_02376632.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 215

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                        D L  ++            +      G +   LVR    Q   LD  
Sbjct: 2   ITVLIADDHTLVRDGLRHILQNASGFEVAGEAW-----DGPTTIALVRSTPAQVLVLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L++ +   +             L   +       +       + Y +     
Sbjct: 57  MPGRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESAS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +   G  +      +        A               L+ RE +    I
Sbjct: 109 AELVGAVTKVASGGVYVSLAMAEQFAQSLNEPAETL--------PHQRLSDREFDVFRRI 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 161 AAGQTLTEIAQALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKLL 209


>gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 205

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 25/227 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              +   P     L  ++     +     +    +    +               D  + 
Sbjct: 4   VMLIDDHPVVRAGLRAILNAFPDIDV---VLEGADGADVAKLAAPDAPHVDVVICDIQMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                     +A +              L    + T  + ++        Y         
Sbjct: 61  GTDGIAATSQLAQAGGPP---------VLILTTYDTQSDIVSAVEAGALGYLLKDAPEQA 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   ++      R +  +    +              +     +  L+ RE+E L  ++ 
Sbjct: 112 LHDAVLATAAGKRTLAPEVAALLA-------------ERITRPEVALSSRELEILEALAT 158

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK++ E+A  L IS  TV  ++  I +K    TR+ A+  A    ++
Sbjct: 159 GKSNKELAQRLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205


>gi|223934739|ref|ZP_03626659.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896694|gb|EEF63135.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 216

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 30/236 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ + +  +DE     ++ L  R      +  +         +  +   +          
Sbjct: 10  QIKVAIVEDDEGIRLSLATLIRR---APALRLVGDHADGETALKEIPRQL---------- 56

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      + VR +          V+     L   V+             
Sbjct: 57  --PDVVLMDINLPGMNGVECVRQLKG--------VVPSVQFLMLTVYEDSESLFNSLKVG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       +R+   +  +   G  +          LA      F            L
Sbjct: 107 ASGYLLKRTATSRLIEAIFDVHAGGSPMTP-------QLARRVVQFFSKPTGDTSPVARL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T  E E L  ++ G    EIA  + IS +TV +Y+ ++  K    +R+ A+   ++
Sbjct: 160 TPGEKEFLDQLAAGYAYKEIAERMRISIDTVRSYVRTVYEKLHVHSRTEAVVKYLK 215


>gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 68/233 (29%), Gaps = 18/233 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           +R    R           D LA ++ L   +         T   G     LV        
Sbjct: 14  HRMSALRVVLADDQRIVRDGLATVLGLLDGIEVVG-----TAAGGDEAVELVAALAPDVL 68

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D  + +       R +                 +    +      +   A   + + S
Sbjct: 69  LTDLRMPAGDGVSATRRVREGRS--------GTAVVVLTTYVDDDAVVDAIAAGASGWLS 120

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              D   I   L         +    L  +       +    +          LT REVE
Sbjct: 121 KDADAEAIGRALRSAADGVSTVDAAVLARLV-----ASRPAGAPVAEREPPDGLTPREVE 175

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  I+EG ++ EIA  L +   TV  ++  +  K   + R+ A+ YA R+ +
Sbjct: 176 VLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228


>gi|237730506|ref|ZP_04560987.1| transcriptional regulator FimZ [Citrobacter sp. 30_2]
 gi|226906045|gb|EEH91963.1| transcriptional regulator FimZ [Citrobacter sp. 30_2]
          Length = 210

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 78/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLEKNSNIQVVLKTDDSRTAIEHLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +   +        +    LF               
Sbjct: 49  ---PVDLVILDIELPGSDGFTLLKRIKSLQ--------ENTRVLFLSSKSESFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         D L  I  +         +       D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKMILSGYSFFPSDTLNFINNI---------NMKKGVLNDM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K    T    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKANIYAKLGLHTIVELIDYAKMHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LM 210


>gi|170722540|ref|YP_001750228.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169760543|gb|ACA73859.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 212

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D   S    +  L               
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGEADSGESALKLVREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S  D           +   V    P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSHPD--------TKVVAVTVCEEDPFPTRLMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L F   R I      ++ L         KS+         L+
Sbjct: 99  AGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLAL---------KSFQPQGSPFDALS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 150 EREIQIALMIVGCQKVQLISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208


>gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
 gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated
           [Pseudomonas fluorescens WH6]
          Length = 254

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW-----PFDLVRC 89
           R++P           + L + +G    +     +  +Q    I  S       P D    
Sbjct: 11  RLMPGRSLDEQMDNTFLLAQQLGFDALVYDYTPVPTDQDGALITPSVLELRNTPPDWHAL 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPP------------------AGMDNRYC 131
                  +   V         P   +       P                    +     
Sbjct: 71  WCGKGFYQIDPVQHLALSTVSPFVWSYEAKTDTPLQKIIDPCHAPVSSYLHDQQLTCGVS 130

Query: 132 SLTFDVARIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
                       L  L            +  L E  +++               + +   
Sbjct: 131 VPIHLPRGGFASLTGLRTGKASSVLQDAQQTLSEFSVISHALQEAAYPLFSKELRTYPYI 190

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE ECL W +EG T+ +IA  L  S   V+ ++AS M K   K R  A+  A    
Sbjct: 191 HLTKRERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVRATHYR 250

Query: 245 IV 246
           ++
Sbjct: 251 LL 252


>gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 216

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 14/224 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                   S  LA ++     +     ++      G +    V         +D  +   
Sbjct: 7   IADDQVLLSRALATILGSQPDLEVVATVH-----DGQAAVDTVAHTPVDLVLMDVRMPKL 61

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                ++ +                 +    F+             N +     D   + 
Sbjct: 62  DGVAALKKIRAKPNPP--------KIVMLTTFNVPDTVKAALTAGANGFLLKDADPETLI 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++  D +  I   A   A       V  G    LT RE+E L  I EGK
Sbjct: 114 ESVRTVAAGQTVLAADVVGHILPGALTVAADTLPSHVQQG-LSLLTPREMEVLHAIGEGK 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA  L IS  TV  ++++++ K   + R      A +  +
Sbjct: 173 TNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKVGL 216


>gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 220

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E    +  +    D+      LD  +     
Sbjct: 9   RILLADDHTLVRRGVRLILDAEPDLEVVAEAADGAEAVAALRDVDVDLVILDVAMPRMTG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 L   +               + Y   +     +   
Sbjct: 69  LQAARSIVRMRTPP--------KMLMLSMHDNEQYFFEALKVGASGYVLKSVADEDLVKA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     +    +  +        +     +        LT RE E L  I+EG ++
Sbjct: 121 CRTAMSGQAFVYPGAMSAL---VRDYLDRLNRGESL--PRTVLTEREDEVLKLIAEGHST 175

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  +  +I+ K   + R+    YA+R  ++
Sbjct: 176 REIARELTISYKTVERHRENILAKLGLRDRTQVTRYAIRAGLI 218


>gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 238

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 22/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V        +LA  +             ++ + +      +          LD ++S
Sbjct: 11  VMMVEDHTAIRQMLAAFVAAMPGFHVVAEAESVEQAL-----AMAELHRPSVVVLDWMLS 65

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  VR +            +           +        A     Y   T     
Sbjct: 66  GRSGLGFVRDIR------IDPPPRVLVFSAIT---SALAVREALAAGAKGYLEKTAPFDE 116

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            ++ L  +      +       +   A     +             LT RE E L +++E
Sbjct: 117 FKMALRSVAAGREYLGASAKRLLQQEAHAAMRLGAGPA--------LTNREREVLRYVAE 168

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S EIA  L +S  TV N+ A+I+++T  ++ +  + YA R  ++
Sbjct: 169 GLGSKEIADRLALSTRTVENHRANILKRTGLRSVAQLVLYAARLGLI 215


>gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16]
 gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 239

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 10/218 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           S +L R+  +   + +     +    + A    LV    F    +D+ +      +L+RC
Sbjct: 30  SPMLTRLCGILTVLDYAAGALSFAGTI-AQACALVDQGPFDMALVDTSLPDGSGIELIRC 88

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +          ++   +           E +         Y     D   + + L     
Sbjct: 89  LRERA--PDLPIVVIASPGTDT------EIVGALIAGATGYLLKERDDIELTVCLRGALR 140

Query: 150 KGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            G  I        +  L    A               L+ RE E L +I++G T+ EIA 
Sbjct: 141 GGTPIDPSIAKRLLTTLVPKAAPAETRLSPTGSVKPLLSARETEILVFINKGSTNREIAD 200

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +SR T+ +++ +I +K A KTR+ AI  A    ++
Sbjct: 201 ALSLSRLTIESHVKNIYKKLAVKTRTQAIFEARAYGVL 238


>gi|158338160|ref|YP_001519337.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158308401|gb|ABW30018.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 238

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 81/255 (31%), Gaps = 31/255 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +V+  + +     ++     S  +  +                    G     ++
Sbjct: 1   MTKIQVVIIEDHDLSRVGLTAALQHSGTVDVLGSAAN---------------GRQGLEMI 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        LD  +      ++   + L +  +  + LQ    L      +    +   A
Sbjct: 46  QQYKPDVAILDIGLPDIDGIEVT--LQLKQFQQADDSLQ-TKVLMLTANTSEDAVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV------ 178
              + Y      V  +   + L       I  +    +   A       +  +       
Sbjct: 103 AGADSYSLKEVSVEDLLSAIQLTHEGNAWIDPNIARIVLQQAKASKKTPQDAETDTTVIK 162

Query: 179 HWGKDFE-------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
               +++       LT RE+E L  I  G ++  IA  L IS  TV  ++ SI+ K    
Sbjct: 163 ATDPEYQAILETEPLTDRELEVLELIVAGCSNAVIADKLYISVGTVKTHVRSILNKLCAD 222

Query: 232 TRSGAIAYAVRNNIV 246
            R+ A   A+R+ +V
Sbjct: 223 DRTQAAVRALRSGLV 237


>gi|239945320|ref|ZP_04697257.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991779|ref|ZP_04712443.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448782|ref|ZP_06588172.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351729|gb|EFE78633.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 244

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 63/241 (26%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + ++ +      +  +            +  L               
Sbjct: 16  VRLLIVDDDPLVRAGLTLMLGGDPGIDIVGEGTDGNEVEELVERL--------------- 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +           +          FH   + +       
Sbjct: 61  RPDVVLMDIRMPVMDGLTATERLRRR---PDAPEVV-----VLTTFHADEQVLRAIRAGA 112

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGKDFE 185
             +       ARI   +  +     ++      ++   A      +     +    +  +
Sbjct: 113 AGFVLKDTPPARIVDSVRRVAAGDPVLSPAVTRQLMARAAGGGHGDRADRTERARRRFGQ 172

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E    +  G ++ EIA  L +S  TV  +++ I+ K     R           +
Sbjct: 173 LAEREQEVAVAVGRGGSNAEIAASLYLSVATVKTHVSRILAKLELNNRVQIALLVHDAGL 232

Query: 246 V 246
           +
Sbjct: 233 L 233


>gi|284047162|ref|YP_003397502.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951383|gb|ADB54127.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 228

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 61/213 (28%), Gaps = 12/213 (5%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 +    E VG +  +     L +    D +V      D      +         +
Sbjct: 19  AGLKAGLGPTIEVVGEAGTVEEAVPLIRTLDPDVVVLDVHLPDGGGQAVIPAVHAERPGV 78

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-- 160
           +        V     + +         Y + +     +   +  +     +         
Sbjct: 79  RFL---ALSVSDAAEDVVAVIRSGARGYVTKSIAPDELVDAIHRVADGDAVFSPWLAGFV 135

Query: 161 -------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                    G     +            +  +LT RE + L  I+ G    EI   L IS
Sbjct: 136 LDAFGGGGGGGEGGGRGAGAAGAGGGDPELDQLTAREQDVLLLIARGYMYKEIGARLHIS 195

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV +++++++RK    +R     +A +  ++
Sbjct: 196 VKTVESHVSNVLRKLQLSSRHELTRWAAQRRMI 228


>gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 204

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 57/185 (30%), Gaps = 6/185 (3%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                +D  +        +  +             R   L    F   
Sbjct: 22  GEEAVEACARLRPDVLLMDIRMPRRDGLWALVELGRRSLL----GPGRSRVLMLTTFDLD 77

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                  A   + +         +   +         +       I  +  +     +  
Sbjct: 78  AYVDDALAAGASGFLLKNSSYEELTGAVRAAVAGHSALSPAVTQRI--IEGHLRGRRRPS 135

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +  +LT RE++ L  I +G ++ EIA  L +S +TV+ +++ ++ KT  ++R+ A
Sbjct: 136 DQDLARLRDLTEREIDVLRLIRDGLSNAEIAERLVVSLHTVSTHVSRVLTKTGCQSRAQA 195

Query: 237 IAYAV 241
              A 
Sbjct: 196 AVLAR 200


>gi|238062942|ref|ZP_04607651.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884753|gb|EEP73581.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 217

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +      +  +                    G          
Sbjct: 2   IRVLLADDEAIIRAGVRAILATDPGIDVIAEAAD---------------GREAVEFALAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +          VL          F              
Sbjct: 47  RPGVVLLDVRMPRLDGLAAAAELLR--------VLPGIGVAMLTTFGDDEYVARALDSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D   +  G+  +   G  +  D      ++   +A           K  +LT
Sbjct: 99  RGFLLKSGDPRELLTGIHAIADGGAYLSPDITA--QVIGRLRATGLGRAAEARAKVQQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G ++ +IA  L +   TV  ++++I+ +     R  A   A    +V
Sbjct: 157 DRERDVLALVGAGLSNAQIARRLHLVEGTVKGHVSTILARLGLANRVQAAVLAHEAGLV 215


>gi|160893007|ref|ZP_02073795.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
 gi|156865090|gb|EDO58521.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50]
          Length = 207

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +D   ++ +  +      +  +                T   G     L    
Sbjct: 1   MNIIIVDDDAFVSASLKIILESCSDITVLA---------------TGANGHDAISLYDTY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +                 L    F      I       
Sbjct: 46  SPDVLLMDIRMEGMDGLTAAKEIIT--------GHPDAKILLLTTFADDDYIIKAIRTGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +  +     +   + + +I  L        ++ D      + LT
Sbjct: 98  KGYILK-QDFETVASAITAVHNGQTVFGNEIMNKIPTL-------LQTDDRFDYLSYNLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E E +  +++G  + EIA  L +S  TV NY+++I+ K   + R+    +  +N
Sbjct: 150 EKEFELIRLVADGLNNKEIAEQLFLSEGTVRNYLSNILMKLDLRDRTQVACFYYKN 205


>gi|325677563|ref|ZP_08157226.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325551634|gb|EGD21333.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 206

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDWP 83
           +    D L     L   +     +  + E   G     +          +D  + +    
Sbjct: 4   VLLVDDHLVVRAGLRALLDSQPDITVIGEADTGEDAVAMAADRSPDVVMMDLALGTGIDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +  +  ++          L    + T  + +         Y         I   
Sbjct: 64  VEAIRRIRAARPEQ--------PVLVFTTYDTDADVVRALDAGAIGYLLKDSAPQDIFGA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++          +A+   +  +  D        LT RE E L+ ++EG T+
Sbjct: 116 IRDAVAGRSVLSP-------PVASRVLDRMRRPDQA------LTAREAELLSLLAEGLTN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E+   L IS  TV  ++A I  K    +R+ A++ A+R 
Sbjct: 163 KELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202


>gi|260072623|gb|ACX30521.1| two-component system nitrate/nitrite response regulator [uncultured
           SUP05 cluster bacterium]
 gi|269468662|gb|EEZ80302.1| two component LuxR family transcriptional regulator [uncultured
           SUP05 cluster bacterium]
          Length = 209

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 14/178 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    ++++ +          ++               +         
Sbjct: 44  SLDVILLDLRMPTMSGVEVLKSLKSKNIQT--PIV------MLTTSTEENDLRNCLKHGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   L  +     ++ +D      +LA    N     +  +     LT
Sbjct: 96  QGYLLKDMDPDELVDALNEVSKGSIVVAQDMT---HVLAKVLRNELTDSEPSFDS---LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    ++ G ++  IA  LGIS  TV  ++ SI++K +  +R            
Sbjct: 150 NREKEVSCQVAIGHSNKVIARELGISDGTVKLHVKSILKKLSLSSRVEVAVMVTEKGY 207


>gi|148271823|ref|YP_001221384.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829753|emb|CAN00671.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 245

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 56/240 (23%), Gaps = 25/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +V+  +D    + ++ L      L  +      ++    +                
Sbjct: 27  PPIRVVIVDDDALVRAGLAMLLGGGHGLEVVGEAADGLAAGTVIARTA------------ 74

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +                 D           +    F      +     
Sbjct: 75  ---PDVVLMDIRMPVCDGITATAREVARRPD--------LPVIVLTTFDADELVLGALRA 123

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +         +   +  +     I+    L  +  +                +   
Sbjct: 124 GARGFLLKDTPPVDLVHAVRQVAAGRSILSPSVLDTV--IGVAAQRDRADRTAERERFQT 181

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    I+ G ++  IA  L +   TV  ++  ++ K   + R           +
Sbjct: 182 LTEREQEVALAIARGWSNARIAADLYLGVATVKTHVGHVLDKLGVEGRVQVAVLVHEAGL 241


>gi|110805887|ref|YP_689407.1| response regulator [Shigella flexneri 5 str. 8401]
 gi|110615435|gb|ABF04102.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|323937189|gb|EGB33469.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
          Length = 206

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 63/210 (30%), Gaps = 16/210 (7%)

Query: 37  IPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             +   +     +  + E   G       R +      +D  +      +  R +A S  
Sbjct: 3   AGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARS-- 60

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +   V    P            Y S       +   +  ++   R I 
Sbjct: 61  ------TADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIA 114

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            D   ++ L            +        L+ RE++ +  I++G+  +EI+  L +S  
Sbjct: 115 SDIAQQMALSQI-------EPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPK 167

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TVN+Y   +  K            A+R+ +
Sbjct: 168 TVNSYRYRMFSKLNIHGDVELTHLAIRHGL 197


>gi|91782650|ref|YP_557856.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91686604|gb|ABE29804.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 292

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 31/235 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           + +R   +  L  + D LAR             +                      Q+ D
Sbjct: 9   NAERRDGLKALLRQIDRLARFNEAQDWRQVERPLKR--------------------QRPD 48

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V      D +          +Y  L+           +                    
Sbjct: 49  LLVID--WQDWMSIADTRHLLSHYPDLRIA---VLTDQISPVSVRELMDEGVLGVVPRDT 103

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELTGREV 191
           D   I     ++   G  +    L         +A    +              L+ R+ 
Sbjct: 104 DPCLIVRAFEMVLLGGHYVPPGALALDPPLPPDIAIRPFDEKSPPPRRTKLANGLSPRQQ 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 164 QIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|495212|gb|AAA65231.1| fixJ-like response regulator [Pseudomonas syringae]
          Length = 214

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 212

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 69/227 (30%), Gaps = 19/227 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D     I L   +S T       E   G     L R        +D  +   
Sbjct: 1   MTRILIVEDHALMRIGLRQVLSQTPEYEVAGEAADGEQALALARSLQPDLVLMDLGLPVM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD--VAR 139
              ++ R +                 L               A   + YC        +R
Sbjct: 61  SGTEVTRILKRE--------YPAMRVLALTSHDEDESVFGALAAGADGYCLKATAGIASR 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +      +  D       +A              G D  L+ RE+E L  I++
Sbjct: 113 LLAAVASVRDGAAWLDPD-------IADRVLRDLGRI-PQAGADNPLSEREMEVLKLIAD 164

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ EI   L I+  TV  ++++I+ K     R  A   A+R   +
Sbjct: 165 GLTNAEIGRRLYIASGTVRVHVSNIIAKLGVNDRVQAAVRALREGWI 211


>gi|329934840|ref|ZP_08284881.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305662|gb|EGG49518.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 209

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 29/233 (12%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R +  R             LA ++ ++  +    ++ A     G +              
Sbjct: 6   RTEPVRVLLAEDQGMMRGALALLLGMEDDLEVVAQVSA-----GDAIVEAALAHRPDVAL 60

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      D    + +         +     L    F                +   
Sbjct: 61  LDIELPGMSGLDAAAELRVR--------VPGCRVLILTTFGRPGYLRRAMEAGAAGFLVK 112

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              V  +   +  +    +++       + + A                   LT RE + 
Sbjct: 113 DGPVEELAAAVRRVLAGEQVVDPA----LAMAALSAG------------PNPLTPRECDV 156

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L   ++G T  +IA  L +S +TV NY++S++ KT T+ R+ A+  A  +  +
Sbjct: 157 LRSAADGATVADIAAELHLSESTVRNYLSSVIGKTGTRNRTEALREARHHGWL 209


>gi|330958462|gb|EGH58722.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 214

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|293375961|ref|ZP_06622221.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325841957|ref|ZP_08167534.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645398|gb|EFF63448.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325489790|gb|EGC92145.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 214

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  ++      +  + +  + +  +              +                
Sbjct: 2   IRILIVDDEALIRDGLRLMLSLFEDIEVVATASNGEEALKACQS--------------HP 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +             +   L    F              
Sbjct: 48  DIDLVLIDIRMPLCDGVLGTRLIKE--------AFPKIKVLILTTFKDQSYIQEAMQLGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I  G+        I   +   ++              D  + + + L+
Sbjct: 100 SGYLLKDSSHEVIYEGIKSAIMGNVIFHPEVATQL----LNTQTTSIKSDAQFYEQYRLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  +  I+ G T+ EIA  L +S  T+ N+I +I+ K   + R+    +A +N +
Sbjct: 156 EKELMIIREIATGLTNKEIAAKLFLSEGTIKNHITNILFKLELRDRTQIAIFAFKNGL 213


>gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 226

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 62/224 (27%), Gaps = 15/224 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDW 82
            +    D       L   +     +  ++E         LL    +  +     ++    
Sbjct: 12  RVMVVDDHAIVRRGLRAYLETVPDLRLVSEAADGQEAVDLLNERHVVGDPMPHVVLMDLQ 71

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L    A       Y  ++         F          +     Y     +   +  
Sbjct: 72  MPRLDGIEATRSILASYPDVKVV---VLTSFSEAERVHAALSAGAAGYVLKDAEPEEVAT 128

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +       +           +           LT RE + L  + +G +
Sbjct: 129 AVRAAVKGEVHLDAAVARLLA----------RRMASPQVGVTSLTARERDILVLVGQGLS 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  T   ++++++ K    +R+ A   A+R  +V
Sbjct: 179 NREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGLV 222


>gi|71907204|ref|YP_284791.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71846825|gb|AAZ46321.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 218

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 72/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  ++  + +     + H+ + +  +         +   + +   T        +L    
Sbjct: 2   IRTLIADDHDILRIGLKHILSDTGDIVVTAEASNGIEALVELRKGT----FDALVL---- 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L++ +             +   L   +       +       
Sbjct: 54  -------DLTMPGRNGIELIKQIKGE--------FPKLPILILSMHKEDIYAVRSLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +   G  I +    ++ L   +                 LT
Sbjct: 99  SGYLCKDSAETLLADAIRKVADGGLFINQAVAEKLTLQILH-------GRDTDAPHTGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    I +G    EI   L +S  TV+ + ASI+ K   +  +  + YA+++ ++
Sbjct: 152 DREHQIFLMILQGLGVTEIGRQLNLSVKTVSTHKASILAKMNLRNSAELVRYAIQHRLI 210


>gi|291530798|emb|CBK96383.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum 70/3]
          Length = 207

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 17/184 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L R        LD  +      +  + M                 L    F   
Sbjct: 35  GAEAVELCRKYKTDIALLDIRMPVMDGIEAAKIMLEENL---------CKPLLLTTFDEQ 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y         I   L  ++  G +  +D       + +Y  +     
Sbjct: 86  ELIQRALKVGVSGYILKNTQTDGIFSALRTVYNGGTVFQQD-------ILSYIRDAAVKC 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG- 235
                    LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+  
Sbjct: 139 YGKSAVFGLLTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQI 198

Query: 236 AIAY 239
           A+ Y
Sbjct: 199 AVRY 202


>gi|302867778|ref|YP_003836415.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315505818|ref|YP_004084705.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302570637|gb|ADL46839.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412437|gb|ADU10554.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 208

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 56/218 (25%), Gaps = 15/218 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L         +  + E   G     L          +D  +     
Sbjct: 3   RVLLVDDQHLIRAGLRMLCDAQPDLEVVGEADNGRDAVALAARLRPDVVVMDLRMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +                 +    F                +       A +  G
Sbjct: 63  ITATSRILADR--------PATRIMVLTTFGDDDHLYPALTAGACGFLLKDAPPADLLDG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +            D L  +   A +             +  +LT RE + L  +++G ++
Sbjct: 115 VRRAAAGDSPFSPDVLRRLVERAVHARAGAPR------RTADLTAREQDVLDLVADGLSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            EIA  L I   TV  +I S+M KT +  R     +A 
Sbjct: 169 TEIADRLHIGVTTVKTHITSLMTKTGSANRVRLALWAR 206


>gi|291286657|ref|YP_003503473.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883817|gb|ADD67517.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 212

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 71/227 (31%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKL 74
           E R S V      S+ L+ ++  +  V          +    +   L            +
Sbjct: 4   EIRVSIVDDNIELSESLSSILRSEPGVEL-------IDTYPNAEMALSGIADSPCDILIV 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +L++ +   + +           L   +               + Y    
Sbjct: 57  DINLPGASGIELIQQLVSRQIETQ--------FLVYTIHDGNEYLFKALKAGASGYILKG 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               +I   + LL   G  +      ++          F         +  LT REVE L
Sbjct: 109 TPAIQITNSVRLLHDGGSPMTPSIARKVI--------SFFQDKPFNNDENRLTKREVEVL 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             + +G T +E++  L ISRNTV+ +I  I  K     +  A+  A 
Sbjct: 161 KLLDQGFTYNEVSAELDISRNTVHTHIKKIYEKLQASGKEDALRKAR 207


>gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 202

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ L    D L  +            +  L               
Sbjct: 2   ITLYLAEDQSMLNSALTQLLDLEDDLHVLGSAGDGAKAWQDIQQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +  SE +           +    F          A   
Sbjct: 47  KPDVAVLDIEMPKLTGLDVADKIHGSELE--------TKVIILTTFAQKAYFERAIAAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 99  NGYLLKDSPSDDLIDVIRKVMTGQTVYAPELVTNM----------------VTAESNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A+  A +N  +
Sbjct: 143 DRELAVLAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKNKWL 201


>gi|28870687|ref|NP_793306.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213969014|ref|ZP_03397154.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301385424|ref|ZP_07233842.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060502|ref|ZP_07252043.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|28853935|gb|AAO57001.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926313|gb|EEB59868.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331015804|gb|EGH95860.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 220

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADIPGYAIVGEAADGAQLSGLAQRL---------------E 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S   FD ++ +          V      L   +       I        
Sbjct: 49  PDIILLDIWMKSIDGFDALKQLFK--------VQPHCKVLILSMHTDPDMIIRALDAGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +  L                + + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNDQRYLSPAIAHTV--LERAVHGTRAERARAARERYNLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRERII 216


>gi|283836093|ref|ZP_06355834.1| hypothetical protein CIT292_10512 [Citrobacter youngae ATCC 29220]
 gi|291068280|gb|EFE06389.1| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC
           29220]
          Length = 197

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 60/219 (27%), Gaps = 30/219 (13%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSIVSS 80
           ++ +    D L         +     +  + E  G+    L        Q    D  +  
Sbjct: 1   MTTIALIDDHLIVRSGFAQLLGLEPDLQVVAE-FGSGSEALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  ISGLELLSQLP-----------KGMAIIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIA  LG+S  TV+ + A++M K            
Sbjct: 153 MAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|291302996|ref|YP_003514274.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572216|gb|ADD45181.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 213

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 15/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           V+    M  + E   G     L R        LD  +      
Sbjct: 5   VLIADDQEMVRTGFRMIVNANSDMEVVAEAADGVEAVELARRHRPDVSLLDIRMPKQDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +A         V +    +    F                +         +   +
Sbjct: 65  QATRLLAGPG------VAEPLKIVVVTTFDLDEYVYGALRAGALGFLLKDAGPTLLIEAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +            +          L+ RE++ +  ++ G+T++
Sbjct: 119 RAAAGGESLVSPAITVRLL--------KHLARPPAAPAAIPLSERELDVVERVARGRTNN 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++ +TV +++ S+  K   + R+    +A  N IV
Sbjct: 171 EIAEELFVAVSTVKSHLESVRAKINVRNRTEIAVWAWENKIV 212


>gi|226365558|ref|YP_002783341.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244048|dbj|BAH54396.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 208

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 37/240 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +     + +  L      +  +                    G      V
Sbjct: 1   MTTVTVLLVDDHAVVRAGLRALLDSQPDIEVIAEAGT---------------GEEAVDAV 45

Query: 65  RWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                +   +D  + S     + +R +          V +    L    + T  + +   
Sbjct: 46  TTSRPRLVTMDLALGSGIDGVEAIRRIRQ--------VDRTLPVLVFTTYDTDADVVRAI 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   +        ++       +                    +
Sbjct: 98  DAGAIGYLLKDSTPQEIFAAVRGAAAGQSVLSPPVASRL-------------LQQMQRPE 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E LT +++G T+ E+   L IS  TV  ++A I  K    TR+ A++ A+R 
Sbjct: 145 EALTPREAELLTLLAKGMTNKELGKALFISEATVKTHLAHIYSKLGVDTRAAAVSVALRR 204


>gi|326332433|ref|ZP_08198709.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949746|gb|EGD41810.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 222

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 30/234 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + + L  + E     +  L    D +  +           R+ AL             
Sbjct: 12  EPIRVFLLDDHEVIRRGIKDLLEDEDDIVVVGESGLAEEARRRIPAL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                  +    +      D        +       +          F       +    
Sbjct: 59  -------RPHVAILDGRLPDGSGIDVCRDVRSVDPSIAAL---ILTSFDDDDALFSAIMA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y       A +   +  +     ++                   +S          
Sbjct: 109 GAAGYLLKQIRSADLVETVRQVAAGKSMLDPAVTA-------QVLERIRSGPKTNSVFEN 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT  E   L  I EG T+ +I   + ++  TV NY++S++ K   ++R+ A   
Sbjct: 162 LTNHERRILELIGEGLTNRQIGKEMHLAEKTVKNYVSSLLAKLGLESRTQAAIL 215


>gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 201

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 56/189 (29%), Gaps = 25/189 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L R        LD  +      D    +     D           +    F   
Sbjct: 36  GEDAVKLARLHQPDVCILDIEMPLKNGLDAAEELKAMGLD--------CKVVILTTFARA 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y         +   + ++    R+   + +                 
Sbjct: 88  GYFERAIKACVHGYLLKDSPSEELASSIRIIAGGRRLYAPELM----------------- 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +G++  LT RE   L  I++GK++ EI+  L I+  T+ NYI+ I+ K     R  A
Sbjct: 131 DEAYGEENPLTEREKAVLVLIADGKSTKEISKELFITTGTIRNYISVILNKLGVGNRVEA 190

Query: 237 IAYAVRNNI 245
           I        
Sbjct: 191 IKQFKEKGW 199


>gi|238764023|ref|ZP_04624978.1| hypothetical protein ykris0001_15230 [Yersinia kristensenii ATCC
           33638]
 gi|238697694|gb|EEP90456.1| hypothetical protein ykris0001_15230 [Yersinia kristensenii ATCC
           33638]
          Length = 210

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   +    R   + +   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIKNMLIAYPRYQIVGQAENGLDVYNLCRQTEPDIVIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          H               Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPTMKIL---ALTARHEEHYASRTLNNGALGYVLKKSPQQILLA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I          L +   +     D        LT RE + L  I+EG  
Sbjct: 115 AIQTVAAGKRYIDP-------TLNSALLSKLAQGDQT--TQTILTPRERQILKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRIIATQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|116692459|ref|YP_837992.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|170738340|ref|YP_001779600.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|254248429|ref|ZP_04941749.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|116650459|gb|ABK11099.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|124874930|gb|EAY64920.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|169820528|gb|ACA95110.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 215

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++            +      G S   LVR    Q   LD  + 
Sbjct: 4   VLIADDHTLVRDGLRHILQNATGFEVAGEAF-----DGPSTIALVRATPAQVLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +   +             L   +       +       + Y +     A 
Sbjct: 59  GRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +      +        A               L+ RE +    I+ 
Sbjct: 111 LVGAVTKVASGGVYVSLAMAEQFAQSLNEPAETL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 163 GQTLTEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKLL 209


>gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC
           BAA-2158]
          Length = 240

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 13/215 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            T  +      +    + L         +  + + S++P D +         +   VL+ 
Sbjct: 26  ITRLIEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPQDWLDHYWREGFYQLDPVLEM 85

Query: 105 PTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RI 153
            +                          G+ +          R    L +          
Sbjct: 86  CSSPGKIWLWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRSVGILSMSTANSQKLIK 145

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--TGREVECLTWISEGKTSDEIAVILG 211
           +  +   +I  +         + +       +L  + RE+E L W +EGKTS EI++IL 
Sbjct: 146 LTTETELKIQYVLELSMAALININDISMATTKLDSSERELEILKWTAEGKTSAEISLILS 205

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS+NTVN +   + ++     ++   +YA    ++
Sbjct: 206 ISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240


>gi|323529279|ref|YP_004231431.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386281|gb|ADX58371.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 216

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +       + H+   +     +     +V               +   L+R  
Sbjct: 2   TRVLLADDHALVRDGLRHILKSASGFEVVGEASDSV---------------TTVALIRAC 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      +L++ +   +             L   +       +       
Sbjct: 47  PAEVLVLDLSMPGRNGVELIKQIKDEK--------PALRILVLTMHAEQQYAVRAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   +  +   G  +                ++             L+
Sbjct: 99  SGYLTKESASAELVAAVTKVAAGGVYVSLAMAERFAQSLNEPTDLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 151 DREFDVLKRIAAGQTITEIAAELCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKLV 209


>gi|149907604|ref|ZP_01896351.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
 gi|149809274|gb|EDM69203.1| transcriptional regulator, LuxR family [Moritella sp. PE36]
          Length = 197

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 28/224 (12%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +S++    D L     +   +    ++ A+ +  G     LV+         D  +    
Sbjct: 1   MSNIILADDHLIVAQGIASILQPEHQILAIAKD-GLELVELVKQHQPDLVITDISMPDMT 59

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               +  +            +    +   +           A     Y         +  
Sbjct: 60  GIAAIAALKRIN--------KHLKIICLTMHDEQEYAEGAIAAGAKGYVLKHEASESLIE 111

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +   G  I      +                       +L+ R++  L  +++GK+
Sbjct: 112 AVNQVLNGGTYISTSITVD-------------------PDKPKLSSRQISVLQLLAQGKS 152

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++A  L IS  TV  +  SIM+    KT +  I YA+ + ++
Sbjct: 153 ARQVADELFISPRTVEFHKYSIMKLVNAKTSAELIQYALNHGLM 196


>gi|294664443|ref|ZP_06729796.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605777|gb|EFF49075.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 213

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 23/224 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   ++    M  + E   G                +D  +    
Sbjct: 8   TDVLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYTRLRPDVVLMDLQMPRVD 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +          V      +    +      +         Y   +     +  
Sbjct: 68  GVEAIQRIRQ--------VDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVD 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R               +              D  L+ RE E L  ++ G +
Sbjct: 120 TIRDVRRGQR--------------RHVPASVAENIAAHVLDDALSARETEVLNLVATGCS 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L IS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 166 NKQIGSALRISEETVKAHMKNILGKLGVRDRTHAVTVALRRGIL 209


>gi|268610385|ref|ZP_06144112.1| response regulator [Ruminococcus flavefaciens FD-1]
          Length = 208

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   S +  + ++   +  +               L               
Sbjct: 2   IKVIIADDVQILRSGLKAVLSQDSDIKVVGEASNGKEAYELCIRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      D        +    ++ ++         F          +   
Sbjct: 47  -----HPDVVLMDMRMPDHDGGYGTRKIKDNFSDIKVL---VLTTFDDKETVNKAISSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D  +I   +  +     +   +    I                   K+F LT
Sbjct: 99  DGYILKEMDNDKIINSIKAVAGGINVFCDNVFRSI---------KKDVVVQQDAKNFGLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  I +G  + EIA  L ++  TV N I+ ++ K   K R+    +A++NNIV
Sbjct: 150 ERETEFIRLICDGCDNKEIAAKLFLAEGTVRNGISRLLEKLELKDRTQLAVFAIKNNIV 208


>gi|225022047|ref|ZP_03711239.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945168|gb|EEG26377.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 212

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   +D +  +  +    +         +  G    L+    
Sbjct: 2   IRVLLADDHEIVRLGLRAVLESADDIEVIGEVATAEAAIAA----AQAGGIDVILMDLRF 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               +       +D   ++ R M                 L    + T  + +       
Sbjct: 58  GPGVEGTRLATGADATAEIKRTMEKPPH-----------VLVVTNYDTDADILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +                       LT
Sbjct: 107 LGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRL-------------MTRVRTPRTSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A +  ++
Sbjct: 154 PRELEVLKLVASGSSNREIGRTLLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212


>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 245

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 15/229 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +  +     +T   G     +V          D ++     ++
Sbjct: 23  ILVVDDDLGTRLSISDYLELSGY-SVITANDGQEALTMVEVYHPDLIVTDIVMPRMNGYE 81

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +            +    +         E I       + Y    F++  +   + 
Sbjct: 82  LVRRVRQQ------PPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIH 135

Query: 146 LLFPKGRIILRDRLWE--------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            L  + +II  +  +         +        +   ++         LT RE E L  +
Sbjct: 136 NLLERSQIIQSEYRFSQKDNSGSPLPSKIVESHHSVFTHVEKSHLLSSLTPREQEVLEML 195

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ + +V
Sbjct: 196 THGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGLV 244


>gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
 gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas
           perforans 91-118]
          Length = 200

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 70/219 (31%), Gaps = 24/219 (10%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D    +  +   +S    +  + E   G       R        +D  +      + +
Sbjct: 3   VDDHPLLLDGIKAALSEQPDIALIAEATNGREAIEQFRVHGPDVTLMDLQMPGMGGLEAL 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +                 +    +    + ++        +         +R  +  +
Sbjct: 63  RGILSEW--------PEARIVVLTTYRGDAQAMSALKSGARGFMLKGMMRKELRDTIRAV 114

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R++  +   E+   A                + +L+ RE+E L  ++ G  + EIA
Sbjct: 115 HAGRRVVPAEIAMELAQHAG---------------EDDLSPREMEVLRELARGNANREIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  TV  ++  I+ K   K R+ A+  A++  I+
Sbjct: 160 ESLSVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 198


>gi|91776339|ref|YP_546095.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710326|gb|ABE50254.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 215

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +  +   ++ +  +                          L    
Sbjct: 7   IKVVIADDHAILREGLKQILAETEDIEVVADAKNAAEAIK---------------LAGTK 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +    +           +                 I       
Sbjct: 52  GLDVVVLDISLPDRSGIEACNIIKKEH-----PGVAVLMLSM---HREDAYAIRALRAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S      ++   +  +    + I  +    +            S  +       L+
Sbjct: 104 VGYLSKQSASDQLVTAIRTVAKGKKYISAEVALALA--------DQVSGGLEKPIHDTLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + LT I+ G +  EIA  L +S  TV+ Y A ++ K   +  +    YA++NN++
Sbjct: 156 NREFQTLTMIASGLSVSEIAENLSLSVKTVSMYRARLLEKLNLRHNAELTHYAIKNNLI 214


>gi|330964297|gb|EGH64557.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 220

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADIPGYAIVGEAADGAQLSGLAQRL---------------E 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S   FD ++ +          V      L   +                
Sbjct: 49  PDIILLDIWMKSIDGFDALKQLFK--------VQPHCKVLILSMHTEPDMVARALDAGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +  L                + + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNDERYLSPAIAHTV--LERAVHGTRAERARAARERYNLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRERII 216


>gi|215489014|ref|YP_002331445.1| DNA-binding transcriptional activator UhpA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215267086|emb|CAS11532.1| DNA-binding response regulator UhpA in two-component regulatory
           system wtih UhpB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|323189591|gb|EFZ74871.1| transcriptional regulatory protein uhpA [Escherichia coli RN587/1]
          Length = 196

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTRRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|167749619|ref|ZP_02421746.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
 gi|167657372|gb|EDS01502.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702]
          Length = 207

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 17/184 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L R        LD  +      +  + M                 L    F   
Sbjct: 35  GAEAVELCRKYKTDIALLDIRMPVMDGIEAAKIMLEENL---------CKPLLLTTFDEQ 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y         I   L  ++  G +  +D       + +Y  +     
Sbjct: 86  ELIQRALKVGVSGYILKNTQTDGIFSALRTVYNGGTVFQQD-------ILSYIRDAAVKC 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG- 235
                    LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+  
Sbjct: 139 YGKSAVFGLLTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQI 198

Query: 236 AIAY 239
           A+ Y
Sbjct: 199 AVRY 202


>gi|323965835|gb|EGB61285.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327250808|gb|EGE62510.1| transcriptional regulatory protein uhpA [Escherichia coli STEC_7v]
          Length = 196

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 56/212 (26%), Gaps = 30/212 (14%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSIVSSDWPFDLV 87
            D L         +     +  + E  G+    L             D  +      +L+
Sbjct: 8   DDHLIVRSGFAQLLGLEPDLQVVAE-FGSGREALAGLPGRGVHVCICDISMPDISGLELL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +            +    +   V  +              + S       +   +  +
Sbjct: 67  SQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTV 115

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  D   ++                  G+   LT RE +    +++G    EIA
Sbjct: 116 ATGGCYLTPDIAIKLA----------------SGRQDPLTKRERQVAEKLAQGMAVKEIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LG+S  TV+ + A++M K            
Sbjct: 160 AELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 207

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 78/242 (32%), Gaps = 38/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q+ ++L  +       +  +      +  +                    G     L 
Sbjct: 1   MKQIRVLLVEDHFLARIALQSVLAGHSQIRVIGEASD---------------GEQGIELY 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +     FD++  +  +         +    +    +H   +      
Sbjct: 46  RALKPDVVVLDLRLPRISGFDVITTLRKAP--------RPARIVVLSNYHGSEDIYRAVR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +    R + R  L  +                      
Sbjct: 98  SGAMGYLTKDASGEELINAIQTVDRDLRYLPRLALDRLA---------------ERTPAV 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G+++ EIA  L I+  TV  +++S++ K   + R+ A  YA++  
Sbjct: 143 ELTPREREVLICITQGRSNREIAEQLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQRG 202

Query: 245 IV 246
           +V
Sbjct: 203 LV 204


>gi|262365668|gb|ACY62225.1| GerR-family transcriptional regulatory protein [Yersinia pestis
           D182038]
          Length = 160

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 19/176 (10%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +  +    L++ +           +     +   ++ T     +      + Y
Sbjct: 1   MAVIDISMPDESGLSLLKRLRQQ--------IPHFRAIILSIYDTTAFVQSAMDAGASGY 52

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +   D A +   L  +   G  +  D L  +           +       K   LT RE
Sbjct: 53  LTKRCDPAALVQALRTVNGGGLYLCTDALRAL-----------RQMPQQPSKLTILTPRE 101

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E    + +G +   +A  L +S  TV+ + A+I+ K   +T    + +A+++ ++
Sbjct: 102 KEIFQLLVKGISVKALAEQLSLSHKTVHVHRANILSKLNCETTIELVHFALQHQLL 157


>gi|182437835|ref|YP_001825554.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778470|ref|ZP_08237735.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466351|dbj|BAG20871.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658803|gb|EGE43649.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 214

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 63/231 (27%), Gaps = 28/231 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  ++  +  +       +     G    +L          +D 
Sbjct: 10  PVRILLCDDHVVVRAGLLALLGSEPDIEVVGEAGS-----GEEAVVLAARLTPDVVLMDL 64

Query: 77  IV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +       +  R +A                L    + T  +           Y     
Sbjct: 65  QLGEGIDGVEATRRIAADGTVH---------VLVLTTYDTDADITRAIEAGATGYLLKAE 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +         +          +A+      +S          LT RE + L 
Sbjct: 116 RPEELFAAIRSAAQGRTTLS-------APVASRVMARMRSPRP------GLTDRERDILA 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S+G  + +IA  L IS  TV  ++  I  K    TR+GA++ A    ++
Sbjct: 163 QLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213


>gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans]
          Length = 249

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 64/225 (28%), Gaps = 31/225 (13%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
                 +G+  +         +   D ++ S +P + V    ++       V+    +  
Sbjct: 20  RQEVASLGSPAYAYTVVRK--KNPSDVLIISSYPDEWVDLYRVNNFQLTDPVILTAFKRT 77

Query: 110 CPVFHTLPENITPP------------AGMDNRYCSLTFDVARIRIGLMLL------FPKG 151
            P        +                 + N +  +  D       L ++          
Sbjct: 78  SPFTWDENITLMSDLKFTKIFSLSKRYNIVNGFTFVLHDHMNNLALLSVIIDNNKQGALE 137

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE----------LTGREVECLTWISEGK 201
             +  +    + +L                   +           T RE E L W S GK
Sbjct: 138 ERLSSE-RGTMQMLLIDINEQMYRLAGSVSSSRQRHHADEDKPIFTPRENEVLYWASMGK 196

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EIA I  IS +TV  ++ +I+ K        AI   V   ++
Sbjct: 197 TYGEIATIASISLSTVKFHMGNIVVKLGVSNARQAIRLGVELELI 241


>gi|152966473|ref|YP_001362257.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151360990|gb|ABS03993.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 225

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 16/228 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R              A ++     +    +        G       R        LD  +
Sbjct: 4   RVLIADDQEMVRAGFALILAAQPGIDVVAQC-----ADGVEALEAARRLRPDVALLDVRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 ++ R +A         VL     +    F                +        
Sbjct: 59  PRLNGLEVTRRLAGPG------VLDPVRVVVVTTFDLDEYVHAALRAGACGFLLKDAGPT 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +        +I       +    A  A    S          L+ RE++ +  ++
Sbjct: 113 LLVEAVRAAAAGESLISPAITVRLLQRFAAAAPAPDSRAGEM-----LSERELDVVRLVA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G T+ E+   L IS  TV  +++S+  K + + R    A+A  N +V
Sbjct: 168 RGGTNAEVGAELFISLGTVKAHLSSVQTKLSARNRVEVAAWAWENGVV 215


>gi|226944589|ref|YP_002799662.1| Response regulator GacA [Azotobacter vinelandii DJ]
 gi|226719516|gb|ACO78687.1| Response regulator GacA [Azotobacter vinelandii DJ]
          Length = 209

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 66/235 (28%), Gaps = 30/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  + +   + ++ +    D L  +           +   L                   
Sbjct: 1   MVDDHDLVRAGITRMLADIDGLQVVGQGSSGEEALKKARDL---------------KPDV 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +  S  D           +   V    P            Y 
Sbjct: 46  ILMDVKMPGIGGLEATRKLQRSNPDI--------KVIAVTVCEEDPFPTRLMQAGAAGYL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +    +  +   +  +F   R I      ++ L A         +D        L+ RE+
Sbjct: 98  TKGAALDEMVQAIRQVFAGHRYISPQIAQQLALKAFQPQQSGSPFD-------LLSEREI 150

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    I+  +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 QIALMIANCEKVQSISDKLCLSPKTVNTYRYRIFEKLSINSDVELALLAVRHGMV 205


>gi|167471072|ref|ZP_02335776.1| response regulator UvrY [Yersinia pestis FV-1]
          Length = 197

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 18/192 (9%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G       R  +     +D  +      +  R +     D           +   +  
Sbjct: 13  QCGEDAVKWCRSHVVDIVLMDMNMPGIGGLEATRKILRFSPD--------TKVIMLTIHT 64

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y S       +   + ++    R I  D   ++ L          
Sbjct: 65  ENPLPAKVMQAGAGGYLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMAL---------S 115

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             +      F  L+ RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K      
Sbjct: 116 QLEPPAETPFSCLSERELQIMIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGD 175

Query: 234 SGAIAYAVRNNI 245
                 A+R+ +
Sbjct: 176 VELTHLAIRHGL 187


>gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 21/217 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++  D        +    E       +G S +      +  +   D ++  D+    + 
Sbjct: 2   RVLIADDHDLLRDTLELFLEGEGSFETIGVSTYPEAEARVATDGPFDLVLL-DYSMPGMN 60

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +    + +     +R   +       +             +   T     +   +  + 
Sbjct: 61  GLTGFTRMQALPGARRVAIISGTASREV--AEKVLEAGAAGFLPKTLSAKSLVNAVRFMA 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +    D                +          +L+ RE+E L  +++GK++ EIA 
Sbjct: 119 MGEQYAPLD------------FMRAEEETEVNPLAEKLSPRELEVLEGLTQGKSNKEIAR 166

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I   TV  ++ S+ RK     R+ A   A    +
Sbjct: 167 DLDIREPTVKLHVKSLYRKINASNRTHAAMIAKEAGL 203


>gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4]
 gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4]
          Length = 220

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 69/237 (29%), Gaps = 20/237 (8%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDL 68
           + +  ED   T  +  +    D  A    L   V     +  + +   G +         
Sbjct: 1   MAVVGEDPGMT--IVRVLVAEDQPAVREGLVLLVGLLPEIEVVGQAGDGLAAVEETLRLQ 58

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +         R +           L     +    +      +        
Sbjct: 59  PDVVLMDLDLPRCDGAAATRRIVAE--------LPGTRVVVLTTYADSASIVRALDAGAV 110

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +   +   I   +        ++       +            +       +  LT 
Sbjct: 111 GYVTKAANGDEIGRAIHAAAAGQTVMDLSVQRTLL---------AAARRPAAPPEDGLTA 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           REV+ L  ++ G+ + EIA  L +S  TV  ++  I  KT   TR+ A+ YA ++  
Sbjct: 162 REVDVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYAHQHGY 218


>gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 222

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 10/220 (4%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFD 85
           D    ++ +D    W   +    E  G +                  +   ++      D
Sbjct: 7   DEQITVMVVDDHPMWRDAVARDLEGAGFTVVATADGVATAGRRAAATRPAVVLMDMQLPD 66

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A +   +          L         + +       + Y   +  V  +   + 
Sbjct: 67  GNGAAATAAVLQVSP---DSRVLVLSASSERDDVLDAVKAGASGYLVKSASVVELLDAVR 123

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  +        +  L  Y+       D        LT RE E L ++++G ++ +
Sbjct: 124 ATAAGQAVFTPGLAGLV--LGEYRRMSSAPADEQGLAVPRLTERETEVLRFVAKGLSAKQ 181

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +S  TV N++ + +RK     R     YA+   +
Sbjct: 182 IATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221


>gi|56479349|ref|YP_160938.1| LuxR family DNA-binding response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56315392|emb|CAI10037.1| DNA-binding response regulator, LuxR family [Aromatoleum aromaticum
           EbN1]
          Length = 215

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  + +     +  +  +   +  +                          L+   
Sbjct: 3   IRIVLADDHQMFRHALRAMLEKEPGIRIVGEASNGDELID---------------LISHQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          +      +    F      +       
Sbjct: 48  PVDIACVDIGMPGMNGIEATRRLLA--------IRPHVRVIGLSAFSDRQFVLDLLNAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +      +  D        AA   N              +T
Sbjct: 100 TGYVTKAEAGEELLRAIHTVQQSKTYLCPDV-------AATVTNALLDNAPKDISAPRIT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I+EG TS  IA  L ++ +TV  +  +IMRK    + +    YA+R+ I
Sbjct: 153 ARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRKLDLHSVAELTKYAIRSGI 210


>gi|51594665|ref|YP_068856.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|186893668|ref|YP_001870780.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587947|emb|CAH19550.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|186696694|gb|ACC87323.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 210

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++   R   + +   G   + L R        LD  +    
Sbjct: 3   TKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          +               Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPAMKIL---TLTARNEEHYASRTFNSGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I           A   + + K           LT RE + L  I+EG  
Sbjct: 115 AIQTVAIGKRYIDP---------ALDASMVIKLTQGPANTPTVLTPRERQILKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 206

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 24/224 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDW 82
            +    D +     L   +  T  +  + E   G     +          +D  + +   
Sbjct: 4   RILLCDDHVVVRAGLLALLGSTPDIEVVGEAGSGEEAVAMAAKLKPDVVLMDLQLGAGID 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +A +              L    + T  +           Y         +  
Sbjct: 64  GVEATRRIAPTGVH----------VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFA 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +          +A+   +  +           LT RE + L  +  G  
Sbjct: 114 AIHSAAQGRTALSP-------PVASRVMDRMRGAAGPS-----LTDRERDILGQLGRGLG 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 162 NREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKERRLL 205


>gi|296160668|ref|ZP_06843483.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889194|gb|EFG68997.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 292

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 31/235 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           + +R   +  L  + D LAR             +                      Q+ D
Sbjct: 9   NAERRDGLKALLRQIDRLARFNEAQDWRQVERPLKR--------------------QRPD 48

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V      D +          +Y  L+           +                    
Sbjct: 49  LLVID--WQDWMSIADTRHLLSHYPDLRIA---VLTDQISPVSVRELMDEGVLGVVPRDT 103

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELTGREV 191
           D   I     ++   G  +    L         +A    +              L+ R+ 
Sbjct: 104 DPCLIVRAFEMVLLGGHYVPPGALALDPPLPPDIAIRPFDEKSPPPRRTKLANGLSPRQQ 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 164 QIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
 gi|292831047|gb|EFF89397.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14]
          Length = 230

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 67/237 (28%), Gaps = 27/237 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + E     V  L      +  +          +R+ AL              
Sbjct: 12  PIRVFLLDDHEVVRRGVHDLLNDEADIEVVGEAGTVEQALVRVPAL-------------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       + R +     +           L    F      +      
Sbjct: 58  -RPDVAVLDVRLPDGDGVTVCRELRSRLPELAC--------LMLTSFDDEEALLDSIMAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y       + +   +  +     ++      ++           +  D   G    L
Sbjct: 109 ASGYVLKQIQGSDLVSAVRTVARGQSLLDPSATTKLMARLRGGQQQEEQPDALPG----L 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A + 
Sbjct: 165 TEREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221


>gi|270308742|ref|YP_003330800.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154634|gb|ACZ62472.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 238

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 71/243 (29%), Gaps = 26/243 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + +VL  + E     ++ +  +   +  +     + S    +                
Sbjct: 18  QTIKVVLIDDHEIVRQGLATMLQKEADICLVGDASDSSSGLDIIEKT------------- 64

Query: 66  WDLFQEQKLDSIV--SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                   LD  +  S    F L + +     ++          +    F +        
Sbjct: 65  --NPDVVLLDIQLGNSDIDGFALAKKIKSKSPNRV--------VIMLTGFDSELYLTEAL 114

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK- 182
               N +         +   + + +    I     L+      +          +   K 
Sbjct: 115 KSKVNGFILKEHPRLILACAIRMAYSGISIWDTKILYRALTNISKPKEEIADAPLVHKKF 174

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE   L  +++G ++ +I   L  ++ TV  Y+ + M+K     R+     A  
Sbjct: 175 GTDLTDRERTILNLLAKGYSNKDIGQKLDYTQTTVKKYVYNCMKKLGVSNRTQLAILANN 234

Query: 243 NNI 245
           N +
Sbjct: 235 NGL 237


>gi|121535101|ref|ZP_01666918.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
 gi|121306351|gb|EAX47276.1| two component transcriptional regulator, LuxR family [Thermosinus
           carboxydivorans Nor1]
          Length = 190

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 12/192 (6%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G     L+  +      LD  +      +++R +                 L   +  
Sbjct: 5   ADGQQVLRLLERETADVLILDLAMPVMGGLEVIRELKSRGCQI--------KILVLTMHE 56

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                          Y         +   +  +    R +   +  E+            
Sbjct: 57  DEQYLKEAMRAGALGYVEKKAVDTELFQAIRTVAKGRRYLNPAKTQELLGSLL----AGA 112

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +          L+ RE E L ++  G +  EIA +L IS  TV+ +   IM K     +S
Sbjct: 113 AAHAADDPYTLLSFREREVLKYMVRGYSLSEIAKMLCISVKTVDTHKTRIMNKLGYTEKS 172

Query: 235 GAIAYAVRNNIV 246
             + YA+++ ++
Sbjct: 173 QLVEYALKHGLL 184


>gi|238785765|ref|ZP_04629738.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC
           43970]
 gi|238713348|gb|EEQ05387.1| hypothetical protein yberc0001_7170 [Yersinia bercovieri ATCC
           43970]
          Length = 210

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++   R + + +   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIKNMLAAYPRYHIVGQAENGLDVYNLCRQAEPDMAIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          H         +     Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPTMKIL---ALTARHEEHYASRTLSSGALGYVLKKSSQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I      E+           K           LT RE + L  I+EG  
Sbjct: 115 AIQTVSAGKRYIDPALNSELV---------SKLSQDTENNQPILTPRERQILKLITEGAC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRIIADRLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|297158227|gb|ADI07939.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 249

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 12/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     +  + E  GA     V         LD  +      
Sbjct: 3   RVAVVDDEALVRSGLRLILGTAPDIEVVAECSGADAVAAVHSSAADVVLLDIRMPGVDGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            ++R +  ++        + P       F                +     D  ++   +
Sbjct: 63  TVLRRLLEAD--------RAPAVAMLTTFDAQEYVTAALRAGAAGFLLKDTDPEQLVGAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   G ++         ++  Y A   ++          LT RE E L  + EG  + 
Sbjct: 115 RTLAQGGSVLDPGVTR--AVIGGYLAAEAEATASAA--VEALTPREREVLALLGEGLANP 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  +G++ +TV +++ +++ K     R  A   A R  ++
Sbjct: 171 QIAERMGLAPSTVKDHVRALLAKLGGVNRVQAAIVADRAGLL 212


>gi|170756196|ref|YP_001781032.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           B1 str. Okra]
 gi|169121408|gb|ACA45244.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           B1 str. Okra]
          Length = 217

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 78/242 (32%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + NI++  +++     +  + +  + +  +                    G     L 
Sbjct: 1   MNKTNIIVADDEKLIREGLKIILSTYNDIEVVGLAGD---------------GREALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIKEQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTY---EKELNDDDISLKY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTEREINIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 IV 246
           IV
Sbjct: 215 IV 216


>gi|116671544|ref|YP_832477.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116611653|gb|ABK04377.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 228

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 31/241 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     S +       DL AR+  +    +    +  + +             
Sbjct: 17  IRVVIVDDHAIFRSGLKA-----DLDARVTVVGEAGTVEQAIAVIAQ------------- 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + + ++        +             +L     L   V     + ++      
Sbjct: 59  ----TRPEVVLLDVHLPGGLGGGGREVIAGSAALLGTTRFLALSVSDAAEDVVSVIRAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--KSYDVHWGKDFE 185
             Y + +     I   ++ +     +           LA +  + F     D+   +   
Sbjct: 115 RGYVTKSISGTEISDAVLRVAGGDAVFSPR-------LAGFVLDAFGTAPADIAGDELDR 167

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  I+ G +  E+A  L IS  TV  ++++++RK    +R     +A    +
Sbjct: 168 LSARELEVMRLIARGYSYKEVAKELFISIKTVETHVSAVLRKLQLSSRHELTKWAAERRL 227

Query: 246 V 246
           +
Sbjct: 228 L 228


>gi|160938403|ref|ZP_02085758.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438776|gb|EDP16533.1| hypothetical protein CLOBOL_03301 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  +      +               +                  
Sbjct: 2   IKVLIADDQELIRQSLQIVLNSRPDIMVTDVASNGQEVIRSVRK---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D I+       L          + Y  ++    +    F              
Sbjct: 46  ----NKPDVILMDIRMPKLDGVQCTKIIKENYPQIKI---IILTTFDDDEYVYNALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  ++    +I  D   ++  L +  A    S  V      ELT
Sbjct: 99  SGYLLKGVSMDELANAITTVYNGWAMINPDIATKVLRLFSQMAQADYSILVGDKNVDELT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  +  G ++ EIA  L +S  TV NY+++I+ K   + R+    +AV+ N
Sbjct: 159 KTEWKIIAQVEVGASNREIAEALKLSEGTVRNYLSTILNKLDLRDRTQLAIWAVQTN 215


>gi|330876658|gb|EGH10807.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 220

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADIPGYAIVGEAADGAQLSGLAQRL---------------E 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S   FD ++ +          V      L   +                
Sbjct: 49  PDIILLDIWMKSIDGFDALKQLFK--------VQPHCKVLILSMHTDPDMVARALDAGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +  +                + + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNDERYLSPAIAHTV--VERAVHGTRAERARAARERYNLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRERII 216


>gi|256389850|ref|YP_003111414.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356076|gb|ACU69573.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 229

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +     +  + +   G     L          +D  +     
Sbjct: 5   RVLIADDQAAVREGLALLLETMSDVTVVGQAGDGLEAAALAAELAPDVVLMDLNMPRSDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +  +        ++         +      +         Y +     A I   
Sbjct: 65  IEATATILAAN-----PAIRVV---VLTTYEDDTSIVGALRAGALGYLTKAATRADIERA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQA-----NMFKSYDVHWGKDFELTGREVECLTWIS 198
           +        I+      ++   A             +         +L+ RE + L  I+
Sbjct: 117 VKAAAAGQAILDPAVQRQLLAAATGANTGTGNGTPTAPAAEPESADDLSPREADVLRLIA 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G ++ EIA  L +   TV ++I  I  KT  + R+ A+ YA  +  
Sbjct: 177 AGHSNREIAKKLFVGEATVKSHINRIFTKTGCRDRAQAVQYAFTHGY 223


>gi|298345245|ref|YP_003717932.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315655667|ref|ZP_07908565.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|298235306|gb|ADI66438.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|315489731|gb|EFU79358.1| two component system response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 233

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 65/239 (27%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++++  +     + V    ++     +++    +V                    VR 
Sbjct: 18  PISVLVIDDHGLFRAGVVAELSKYPKEVQVVGEADSVE--------------DAVAAVRQ 63

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           ++     LD  +            A                L   V     + +      
Sbjct: 64  NVPTVALLDVHLPGGHGGGGAEVAAACLGVP-------TRFLALSVSDAAEDVVAVIRAG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y + T     +   ++ +              +              D        L
Sbjct: 117 ARGYVTKTIATPDLVDAIVRVAGGDAAFSPRLAGFVLDAFGAARTDMVGTDSELDS---L 173

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E +  I+ G    EIA  L IS  TV  +++S++RK     R     +A    I
Sbjct: 174 TEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYELSKWAQDRRI 232


>gi|317404098|gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54]
          Length = 218

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 55/228 (24%), Gaps = 18/228 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R   +   P   D L   +     +            + A     +  D        
Sbjct: 6   SPIRLLLIDDHPLVRDGLRLRLETVPHLQVVGEAGNAAAAL-AFLQACLAEDPLGGTLPQ 64

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++       +      ++  + Y  +                 +         Y     
Sbjct: 65  LVLMDLNMPGVGGLELTAQLHERYPQIAVLVLSM---HDNAEYMVQAVRAGARGYLLKDE 121

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   +  +                                      LT RE + L 
Sbjct: 122 PAQEILAAIDAVMTGRTYFSAAV--------------SLRLSQASAPATLLTQRERDVLR 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            I+ G  + +IA  LG+S  TV  +  +I RK     ++  I YAV N
Sbjct: 168 HIASGHANKQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVEN 215


>gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 219

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 77/220 (35%), Gaps = 16/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            HL    D    ++ +   + +       T   G     ++   +      D ++     
Sbjct: 13  KHLLLVDDDPNLVLLVKDYLEFQGY-EVTTAENGKEALEVLTKQIPDMIICDVMMPEMDG 71

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + L+  +    +  +  V+    +          + +       + Y    F+   +   
Sbjct: 72  YSLIEKVRQDARTSWVPVMFLSAKGQS------QDRVKGLNTGADVYMVKPFEPEELVAQ 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +     +   +    +     ++   +N           + ELT  E + +  +++G ++
Sbjct: 126 VESSLKQASRL----MRHKANISLDDSNRI-----QVPSNVELTPTETKVVQLVAQGLSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++A  L +S+ T+ +++++++ KT    R+    +A+ N
Sbjct: 177 RDVAEKLSVSQRTIESHVSNMLNKTNLHNRTELARWAIEN 216


>gi|1934734|emb|CAA73019.1| FlcA [Azospirillum brasilense]
          Length = 215

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 11/207 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-------QKLDSIVSSDWPFDLVR 88
           ++  D  + +   +  L E +      +      +           D ++      +   
Sbjct: 3   ILIGDDHLLFREGLRRLLEQLHGDAIFVEAGTFDEVLQQCRVAGGFDVVLMDLHMPNWPG 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L E       +             L +           Y   +  V  +   L L+F
Sbjct: 63  FDGLREVQSLQPGVPVVVIS---ASEALSDIRGALDHGATGYIPKSSSVKVMMGALNLVF 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +    L      +       +  D      + LT R+ E L  +  GK++ +IA 
Sbjct: 120 SGGIYVPPGALTAATAASDAAPRRGR-LDGADRSAYGLTQRQREVLDCLRAGKSNKQIAY 178

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSG 235
            LG+S  TV  ++ +I +    K R+ 
Sbjct: 179 ELGLSEGTVKIHVTAIFKSLGVKNRTQ 205


>gi|311694458|gb|ADP97331.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 220

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   S ++ +   +  +  +                    G      VR +
Sbjct: 2   IRVLVVDDHELVRSGITRMLADNPDIEVIGQAPS---------------GEDAIDFVRQE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +         ++      +        P          
Sbjct: 47  RPDIVLMDIRMPGIGGLEATRRI----LRIDDSI----RVIVVTACADDPYPTRVMQSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D+  +   + +     R I  +   ++ L         +  D        L+
Sbjct: 99  TAYITKGADIKEMVRAIRMAHTGQRYISPEIAQKMAL--KQLGGGDRDEDGELSLFDRLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    + + +   +I+  L +S  TVN+Y   I  K    +       AVR  ++
Sbjct: 157 EREMQIAMMVVDCQKVQDISDKLCLSPKTVNSYRYRIFEKLEISSDVELALMAVRLGLL 215


>gi|256376144|ref|YP_003099804.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920447|gb|ACU35958.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 214

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 58/231 (25%), Gaps = 26/231 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  ++E     +  +      L  +            +                  
Sbjct: 3   VKVLLLDDEELVRGGIRLILESDPDLRVVAEAPDGSDVLDLVER---------------H 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++VR +           +          F       +   G  
Sbjct: 48  RPDVVLTDVQMPGVDGLEVVRRVTAL---PDAPAVV-----VLTTFDLDEYVHSALRGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + ++     +I       + L     A           +   LT
Sbjct: 100 TGFLLKDTPPRDLVRAVHVVARGEAMISPGVTRRLLL---EFAAEPDGRTEARRRLSGLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            RE E    +  G ++  IA  L +S +TV  +I  IM K     R+    
Sbjct: 157 PREREVAEAVGRGASNAGIARELFLSESTVKVHIGRIMAKLDAANRTQVAI 207


>gi|326381413|ref|ZP_08203107.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326199660|gb|EGD56840.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 212

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 55/235 (23%), Gaps = 24/235 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +D    S +  L      L  +                    G         D   
Sbjct: 1   MIVDDDALVRSGLRLLLGGDPTLEVVAEAAN---------------GREALDRHAADPVD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D                      +    F      +   A   + +
Sbjct: 46  LILMDLRMPVMDGIDATAAFKAGPNPP--------AVIVLTTFDADDYVVRALAVGADGF 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A I   +  +      +       +        +  +        D  LT RE
Sbjct: 98  LLKDTPPAEIVAAIGRVRSGEPALSPSVTAALIKQVVDGRDATREPAGCDAVDM-LTDRE 156

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E    ++ G ++ EIA  L +S  TV  +I+ I  K     R           +
Sbjct: 157 REVAVCLARGASNAEIAAELYMSVATVKAHISHIFTKLDASNRVQVAIRMHDAGL 211


>gi|307328810|ref|ZP_07607980.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885475|gb|EFN16491.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 214

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 27/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  ++E     +  +      +  +   D                G+    LV   
Sbjct: 3   VKVVLLDDEELVRKGIRMVLHAEPDIEVVAEGDD---------------GSVAVDLVAEH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++ R +A          +          F              
Sbjct: 48  RPDVVLTDIQMPRVGGLEVARRLAAL---PDPPAVA-----ALTTFDVDEYVYAALQHGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + +L     ++      ++                   +  ELT
Sbjct: 100 AGFLLKDTSPRELADAVRVLARGEAMLSPRITTKL----LAAFATGAVAPQARSRMAELT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +++G ++ +IA  L +S++TV  +++ IM K     R+          +
Sbjct: 156 AREREVAVAVAQGHSNSQIATDLFVSQSTVKVHLSRIMTKLDAANRTQVALITHDAGL 213


>gi|163754119|ref|ZP_02161242.1| transcriptional regulator, LuxR family protein [Kordia algicida
           OT-1]
 gi|161326333|gb|EDP97659.1| transcriptional regulator, LuxR family protein [Kordia algicida
           OT-1]
          Length = 212

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 33/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +  ++NI++  + +     +  L      +  +            +             
Sbjct: 2   KQKTKLNIIIADDHQIVIDGLKSLLVAHPHIKVVGEASDGEEALKLIE------------ 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      LD  +      +  + +        Y  ++        +          
Sbjct: 50  ---NNTVNIAVLDISMPKMNGVETTKIIKKK-----YPYIKIL---ILTMHDGDEFIHEL 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y             L  +      I    L  +            +      K
Sbjct: 99  FEIGADGYILKNRGKEEFVEALETINNGEEYIKGKVLNVL----------LDAVRKPKSK 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             + T RE + L  I    T+ EI+  L I+ +TV  +  +++ KT  K+  G + YAV 
Sbjct: 149 TIQFTKREKDVLRLIVGDHTTSEISAKLNIANSTVETHRRNLIEKTGVKSSLGLVRYAVE 208

Query: 243 NNIV 246
           N  +
Sbjct: 209 NGYL 212


>gi|254447404|ref|ZP_05060870.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
 gi|198262747|gb|EDY87026.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
          Length = 213

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 17/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +A ++ +   V             G S   L+         +D  
Sbjct: 2   IRVVIVDDQTLVRHGIANLLGMSDKVEVVGEAG-----DGESALYLIPQVSPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++R +  S+ D    V+          F                Y      +
Sbjct: 57  MPGLSGLDVLRKLRASD-DNTPPVIL------LTTFEDQDTLQQAIRLGAKGYLLKDVTL 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L L+     +           ++A   +     D      ++LT REV  +  +
Sbjct: 110 DNLLASLELVMAGQSVFDNRINHRTDDVSAASRSQASLGDA-----YDLTAREVNIIELM 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           SEG ++ EIA  L +   TV NY++S++ K   + R+ A+        
Sbjct: 165 SEGASNKEIAFRLDLKMGTVKNYVSSVLLKLGVRDRTQAVIKIKEEGW 212


>gi|297202407|ref|ZP_06919804.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197710072|gb|EDY54106.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 213

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 16/227 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             GA    L R        +D  
Sbjct: 2   IRVLVAEDQSAVRAGLVLILRSAPGIEVVGEA-----ADGAQAVALARELRPDLVLMDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F                +     + 
Sbjct: 57  MPRLDGVSATREVVAEGLAD---------VLVLTTFDLDEYVFGALRAGAVGFLLKNTEA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+       +  +A + A   +   V       LT RE E L+ +
Sbjct: 108 KDLIEAVRTVARGEGIVAPAVTRRL--IAEFAARPVRGTSVDPAVLDTLTRREREVLSCL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EG ++ +IA  L ++  TV  +++ ++ K   ++R  A   A    
Sbjct: 166 GEGLSNADIAERLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 212


>gi|93005507|ref|YP_579944.1| two component LuxR family transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92393185|gb|ABE74460.1| two component transcriptional regulator, LuxR family [Psychrobacter
           cryohalolentis K5]
          Length = 211

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +S +   S  +  +   D           L               
Sbjct: 2   IRVLVVDDHDLVRMGISRMLADSADIEVVGEADSGDMAIKMAKQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +  + +   +       ++             P          
Sbjct: 47  RPDVILLDVNMPNIGGLEATKRLIQLDM-----GIKILAVSSMSA---QPYPSMLIKAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +    +  +   +  ++  GR   +D   ++  +           D        L+
Sbjct: 99  NGYITKGTPLDEMIRAVKKIYQGGRYFSQDVAEQLADVLL--------SDNANSPFDLLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +   ++  +IA  L +S  T+N Y   I  K    +       A+R+ ++
Sbjct: 151 DREKQVAMMVVNCQSPQQIADQLFVSVKTINTYRYRIYEKVNVDSDVKLTHLAIRHGLI 209


>gi|294791176|ref|ZP_06756333.1| two-component system response regulator [Scardovia inopinata F0304]
 gi|294457647|gb|EFG26001.1| two-component system response regulator [Scardovia inopinata F0304]
          Length = 258

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 74/278 (26%), Gaps = 55/278 (19%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           + E  +  +V+  + E     V               +D   S    +    +  GA   
Sbjct: 3   DLENTRTRVVVIDDHEMFRRGV---------------IDTISSAYEVVGQAGDVSGA--V 45

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            ++         LD  V           +  S       +      L   V  +  +   
Sbjct: 46  AVIAQTQPDVVLLDVHVPGGEGGGGSEIILKSV-----PLAPHTLYLALSVSDSPVDVGA 100

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHW 180
                   Y + T     +   +  +     +       + +        +    +D   
Sbjct: 101 VIRAGARGYVTKTITGEDLVASIEQVAQGYAVFSPRLAGFVLTAFQDSAFSQRSDHDQTG 160

Query: 181 GKDFE--------------------------------LTGREVECLTWISEGKTSDEIAV 208
           GK++                                 LT RE E +  I+ G T  E+A 
Sbjct: 161 GKEYPGADSSLRTDSMTFAEGENESDVDDDFDISIDVLTSREREVMQLIARGYTYKEVAS 220

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  +++ ++RK     R     +A    IV
Sbjct: 221 ELFISVKTVETHVSRVLRKLQLSNRGELALWAAHQRIV 258


>gi|194291238|ref|YP_002007145.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193225073|emb|CAQ71084.1| putative response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 228

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 55/236 (23%), Gaps = 30/236 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              ++L  +       +         L  +   D   +    +                 
Sbjct: 15  PARVLLIDDHALVRDGMRMHLALQPGLRVVGEADDGEAALAWLERAGAA----------- 63

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D+      D  +       L            Y  L             L          
Sbjct: 64  DMPDLVITDIGMRGMGGIALAAA-----LHDRYPELAVLIVSM---HDNLEYVRQAVRAG 115

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +              I                  G    L
Sbjct: 116 ARGYVLKDAPADELIAAIRSVLAGRVFYSARIARGIA-----------EQSPAAGPLDAL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T RE + L  I  G  + EIA  LG+S  TV  +  ++ RK   + R+G + YAV 
Sbjct: 165 TPRERDILRGIGRGLANKEIAAQLGVSVRTVETHRLNLKRKLGIEGRAGLVKYAVE 220


>gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum]
          Length = 265

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 17/200 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------- 116
               L      + ++   +P + V+     +      V++     F PV  +        
Sbjct: 66  ACDPLSGATASNPLLMLTYPPEWVKQYLERDYFSIDPVVRLGRRGFLPVEWSASKWDSGQ 125

Query: 117 ----PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAY 168
                +                      R    +         R    D + ++  LA +
Sbjct: 126 AYGFFKEAMAFGVGRQGVTLPVRGPHGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHH 185

Query: 169 QANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
             +     S         +L+ RE++CL   + G  + +I   L IS + V  Y+AS  R
Sbjct: 186 LHDRAMVLSGMRKITDFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARR 245

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    T S A+A A    ++
Sbjct: 246 KLTVATTSEAVAKATALELI 265


>gi|271961856|ref|YP_003336052.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505031|gb|ACZ83309.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 214

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 65/244 (26%), Gaps = 36/244 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + +++  +       +  +         +                    GA    
Sbjct: 1   MAEAPIRLLIADDHPIVRDGIRGMFAGDPGFEVLAEAGD---------------GAQAVE 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L R        +D  +        ++ +A                L    + T  + +  
Sbjct: 46  LARALNPDVILMDLRMPKMDGVMAIKELARLGV--------AARVLVLTTYDTDKDVLPA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +        ++       +                    
Sbjct: 98  VEAGATGYLLKDTQRDDLIRAVRTAARGEAVLSPSVATRL-------------LGQVRAP 144

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+E L  I++G T+ E+A  L IS  TV +++  I  K     R+ A+A A R
Sbjct: 145 ADPLSARELEVLELIAQGTTNREVAARLFISEATVKSHLLHIYTKLGVNDRAAAVAVAFR 204

Query: 243 NNIV 246
             ++
Sbjct: 205 RGLL 208


>gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus
           selenitireducens MLS10]
 gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus
           selenitireducens MLS10]
          Length = 199

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 28/224 (12%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ L    D    +  L   +     +  +     G      V+ +      +D  +   
Sbjct: 1   MTRLLIAEDQKMLLGALASLLDLEDDIDVIGTVNNGKEAVEAVKKEKPDICIMDIEMPEM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D    +      K          L    F          +   + Y         + 
Sbjct: 61  NGLDAAELL------KDDP----CKILILTTFARSGYFQKAMSVGVDGYMLKDSPSEELA 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    RI   +                   D  +  +  LT RE E +  ++EG 
Sbjct: 111 EAIRQIMQGRRIFAPEL-----------------IDEVYRSENPLTEREKEVMKLMAEGM 153

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++  IA  L ++  TV NYI++I+ K     R  AI    +   
Sbjct: 154 STKLIAETLFLTNGTVRNYISTILDKLEVDNRIEAIKVYQQKGW 197


>gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas
           wittichii RW1]
 gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas
           wittichii RW1]
          Length = 229

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 74/234 (31%), Gaps = 14/234 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
                 R   +   P   + LAR       ++        +    A     +        
Sbjct: 8   GSRPPHRVLLIEDDPPIRERLAR------ALAAHGDCRVASAGTLAEARARLAEGEQDLI 61

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D  +      DL+              ++           T+       A   + Y  
Sbjct: 62  VSDLRLPDGLAIDLLAEARERH-----PGIEILVISVLGDETTIL---AAIAAGASGYLL 113

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  I    M +   G  I       I   A  +++   +          LT RE++
Sbjct: 114 KDALPEDIHATAMEVLSGGSPISPSIARFIVRRARQESSGAPAAAGPGEDAPRLTPRELD 173

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++G T +EIA  L +SR+TV  +I +I RK   +TR  A+  A++  ++
Sbjct: 174 ILWGIAKGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQCGLI 227


>gi|186470607|ref|YP_001861925.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184196916|gb|ACC74879.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 215

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +          E    A+   LVR        LD  +      
Sbjct: 4   VILADDHTLVRDGLRHILQSASGFKVAGEACDSATTLALVRATDAHVLVLDLSMPGRNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+R +   +             L   +       +       + Y +     A +   +
Sbjct: 64  DLIRQIKDEK--------PALRILVLTMHAEQQYAVRAFKAGASGYMTKESASAELVGAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  +               A               L+ RE +    I  G+T+ 
Sbjct: 116 TKVAAGGVYVSLAMAERFAQNLTEPAEAL--------PHQRLSPREFDVFRRIVAGQTTT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA+ L +S  TV+ + A I+ K      +G + YA+R+ ++
Sbjct: 168 GIALELCLSVKTVSTHKAHILEKMQMPNENGLVRYAIRHKLI 209


>gi|66046128|ref|YP_235969.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|298486858|ref|ZP_07004914.1| predicted response regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|63256835|gb|AAY37931.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|298158725|gb|EFH99789.1| predicted response regulator [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 222

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 10  IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 55  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 107 AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 160 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 218


>gi|323528532|ref|YP_004230684.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323385534|gb|ADX57624.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 210

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       +  +   +  +              ++ +                
Sbjct: 2   INLLIADDHPLVRGGLKQIIETTPDIVVAGEAAQGSEVIEKLRS---------------C 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL+R +                 L   + +             
Sbjct: 47  QVDLLLLDMTMPGISGVDLIRRVRAER--------PSLPVLVLSIHNEAQVVSRALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   +   +   +  L   GR I    +  I          F++Y         L+
Sbjct: 99  TGYVTKDSNPDVLLAAIRKLAEGGRFIDPKLVEGIV---------FETYSGDAPPHEILS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK+ +EIA    +S  T++ +   +M+K      +  I YA+R+ +V
Sbjct: 150 DREFQVLQMLALGKSLNEIADAFALSAKTISTHKMRLMQKLGLANNADLIRYAIRHGLV 208


>gi|197118634|ref|YP_002139061.1| LuxR family helix-turn-helix transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087994|gb|ACH39265.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter bemidjiensis Bem]
          Length = 216

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L  R + +  +      VS   +                  +
Sbjct: 3   IRIILADDHVMFREGMRALLEREEDMVVVAEAGDGVSVVEK---------------TLEN 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     LD  +      +    +           +     +   +       I       
Sbjct: 48  MPDVVVLDLSMPGMNGTEAASVIHQK--------VPGIGIIILSMHSDRQYVIEALKLGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +    +    +   +  +F     +          L+    +         GK + LT
Sbjct: 100 KSFILKEWAFQELVTAVRCVFKDTSYLSPR-------LSDIIISGLADEGKPLGK-YSLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    +  GK   EI   L IS  TV  Y   +M+K      +  + +AV+  IV
Sbjct: 152 PREEQAYRLLVAGKNCKEIGYELKISSKTVETYRLKVMKKLNISNIAQLVNHAVQEGIV 210


>gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora]
          Length = 240

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 13/215 (6%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
            T  +      +    + L         +  + + S++P D +         +   VL+ 
Sbjct: 26  ITRLIEQQLRELELDFYSLFIRHPVPFTRPKTFLYSNYPQDWLDHYWREGFYQLDPVLEM 85

Query: 105 PTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---RI 153
            +                          G+ +          R    L +          
Sbjct: 86  CSSPGKIWLWDDKTISAGLCVFEHARNYGIFHGLSCSVMASNRSVGILSMSTANSQKLIK 145

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--TGREVECLTWISEGKTSDEIAVILG 211
           +  +   +I  +         + +       +L  + RE+E L W +EGKTS EI++IL 
Sbjct: 146 LTTETELKIQYVLELSMAALININDISMATTKLDFSERELEILKWTAEGKTSAEISLILS 205

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS+NTVN +   + ++     ++   +YA    ++
Sbjct: 206 ISQNTVNFHQKKMQKRFNAPNKTQIASYAAAVGLI 240


>gi|52138494|dbj|BAD46749.1| transcriptional regulator falA [Fluoribacter dumoffii]
          Length = 219

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 19/223 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     + +   +     +  + +   G     LV+        LD  +     +
Sbjct: 4   VLIVDDHALVRMGIRRLLEDMSDVEVVADAESGEQALALVKKHSPDVVLLDMKMPGIDGW 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +  S              +      +              Y +       +   +
Sbjct: 64  EVTRRLKKSN--------PHVKVIAVTAMCSDVLPTRVLQLGAMGYLTKESGAEEMAAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             +    R ++ +   ++            S +   G  F+L + RE++ +  I+ G   
Sbjct: 116 RKVAKGERYLIAEIAQKMA---------INSLEEVQGSPFDLLSEREMQVMLMITTGMNV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI+  L +S  T+N Y      K   K        A+++ I+
Sbjct: 167 QEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGII 209


>gi|225872367|ref|YP_002753822.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794530|gb|ACO34620.1| two-component system response regulator [Acidobacterium capsulatum
           ATCC 51196]
          Length = 214

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 63/221 (28%), Gaps = 13/221 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D +     +   +     +       G   F            +D  +      + 
Sbjct: 4   LIADDHMLLRAGVRDAIERNGGIVCDEATTGREAFDKAILYKPTLVVIDVTMPELNGIEA 63

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +           L     +      +     +        Y   T     +   +  
Sbjct: 64  TRRILN--------ALPTVKVIILTQHQSNELVRSAVEAGARGYLLKTDTGQILLQAIQS 115

Query: 147 LFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +   G           +  LA                   LT RE E L  ++EGK++ E
Sbjct: 116 VMAGGTFFSPVITDVVLQSLARSVH----LTGPGIVYKERLTPREGEVLQLLAEGKSTKE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            A +LG S  TV     ++MRK   +  S  + YAVRN+++
Sbjct: 172 AASVLGTSTFTVETQRKNVMRKLRLRNVSDLVRYAVRNHMI 212


>gi|78047743|ref|YP_363918.1| two-component system LuxR family regulatory protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78036173|emb|CAJ23864.1| two-component system regulatory protein, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 213

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 23/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   ++    M  + E   G                +D  +      
Sbjct: 10  VLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYIRLRPDVVLMDLQMPRVDGV 69

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + ++ +          V      +    +      +         Y   +     +   +
Sbjct: 70  EAIQRIRQ--------VDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVDTI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R               +              D  L+ RE E L  ++ G ++ 
Sbjct: 122 RDVRRGQR--------------RHVPASVAENIAAHVLDDALSARETEVLNLVATGCSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I   L IS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 168 QIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGIL 209


>gi|304313067|ref|YP_003812665.1| DNA-binding response regulator [gamma proteobacterium HdN1]
 gi|301798800|emb|CBL47033.1| DNA-binding response regulator [gamma proteobacterium HdN1]
          Length = 221

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + +S +    + +               +                  
Sbjct: 3   IKVLVVDDHDLVRTGISRMLADVEGIRVAGQAASGEDALRLLKET--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D+ +      +  R +                 +   V    P          
Sbjct: 48  RADVVLMDARMPGIGGLEATRKILRQ--------FPDTKVIAVTVCEEEPYPSRFLQAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + ++F   R +  +   ++ L                    +L+
Sbjct: 100 AGYMTKGAGIAEMVKAIRMVFSGQRYVSPEVAQQLAL--------KPFSPAEASPFEQLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +   EI+  L +S  TVN+Y   I  K A  +       AVR+ +V
Sbjct: 152 ERELQIAMMIVGCQKVQEISDKLFLSPKTVNSYRYRIFEKLAITSDVELTLMAVRHGMV 210


>gi|182437063|ref|YP_001824782.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777678|ref|ZP_08236943.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178465579|dbj|BAG20099.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658011|gb|EGE42857.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 216

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 12/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  +  +     +     M  + E   G     L           D  +     
Sbjct: 4   RILLADDQESVRVGFRLILDSQPDMEVVGEASDGLQAVELAAKLNPDVVLADIRMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R +A  + +           +    F       T        +         +   
Sbjct: 64  LEVTRRLAGPDAEN------PMRVVVVTTFGLDEYVHTALGNGACGFLLKRSGPTLLVEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +I          ++  + +              LTGRE E    +++G T+
Sbjct: 118 VRAAMAGDTLISPSLT-----VSLLRHHRDAGRPRAAEPLDALTGRETEIARLVAKGMTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EI   L IS  T   ++A++ RK   + R G  A+   N +
Sbjct: 173 AEIGAELFISAGTAKTHVANVQRKLDVRNRVGIAAWIWGNGL 214


>gi|83312763|ref|YP_423027.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947604|dbj|BAE52468.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 214

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 62/223 (27%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  + E   GA     +         LD  +     
Sbjct: 4   RVMLVDDHRMFREALRAPLEAESDMEIVAEANSGADTLASLDLACPDVLVLDIGLPDLNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R       D           +    F              + Y   +     +   
Sbjct: 64  IEVARTAIRRHPD--------LRIVALSGFADRIYIEEMLKAGAHGYVVKSSGADELVSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +      ++  +  +     D        L  RE E L  ++ G  S
Sbjct: 116 IRAVAGGSSFLSPEAT---QVMLRHIQS---DADTVAPPPSVLGKREREVLVLLAGGLRS 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LGI+  TV  +  +I +K      +  I YAV   ++
Sbjct: 170 AEIAASLGIAVGTVEVHRRNIKQKLGMNRTADLIRYAVHEGLI 212


>gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium
           tumefaciens]
          Length = 269

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 73/252 (28%), Gaps = 25/252 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVS---WTMRMYALTEYVGASHFLLVRWDLFQE 71
           E E R+  V       DL + +   +           +       G   F  ++ +  + 
Sbjct: 23  EWEARSCAVGEKSVDGDLRSLIDMTEAAHDERMIKSALKTFAHACGFERFAYLQTEGSEI 82

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PE 118
           +       + +P +       S   +   V+            T                
Sbjct: 83  RT-----FNSYPEEWQGVYLESHYSRIDPVVWEAKTRMEIFPWTADEWPSRGKSELRQFR 137

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLL----FPKGRIILRDRLWEIGLLAAYQANMFK 174
           +     G+ +             + L             +   +     +LA +      
Sbjct: 138 DQAINHGIRSGVTIPVEGSFGSTMMLTFASSAPAADVSKLQDGQKAVRAVLAIHYRLKML 197

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +          L+ RE  CL W ++GKT+ E A++ GI+  TV +Y+     K    T  
Sbjct: 198 AATTIVPPKRLLSPREAMCLKWAAKGKTAPETAILTGINPRTVQHYLDKAREKLEAATVP 257

Query: 235 GAIAYAVRNNIV 246
             +A A  + ++
Sbjct: 258 HLVAIAKDHGLL 269


>gi|312137639|ref|YP_004004975.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311886978|emb|CBH46287.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 206

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDWP 83
           +    D L     L   +     +  + E   G     +          +D  + +    
Sbjct: 4   VLLVDDHLVVRAGLRALLDSQPDITVIGEADTGEDAAAIAVDRTPDVVMMDLALGTGIDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +  +  ++          L    + T  + +         Y         I   
Sbjct: 64  VEAIRRIRAARPEQ--------PVLVFTTYDTDADVVRALDAGAIGYLLKDSAPPDIFGA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++          +A+   +  +  D        LT RE E L+ ++EG T+
Sbjct: 116 IRDAVAGRSVLSP-------PVASRVLDRMRRPDQA------LTAREAELLSLLAEGLTN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E+   L IS  TV  ++A I  K    +R+ A++ A+R 
Sbjct: 163 KELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202


>gi|296394121|ref|YP_003659005.1| LuxR family two component transcriptional regulator [Segniliparus
           rotundus DSM 44985]
 gi|296181268|gb|ADG98174.1| two component transcriptional regulator, LuxR family [Segniliparus
           rotundus DSM 44985]
          Length = 213

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 30/235 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  + E     ++ L  +   L+ +           R+ A                  
Sbjct: 1   MFLVDDHEVVRRGIADLLEQEPDLSVVGEAGSVAQALARVPAAA---------------P 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +L R +                 L    F                
Sbjct: 46  DVAVLDVRLPDGNGVELCRELRSKLPQISC--------LMLTSFTDEQAMTDAILAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +  +     ++           A       ++     G    LT +
Sbjct: 98  YVIKDVKGMDLVAAVRAVGAGRSLLDNRA-------AEALIRQLRAGKPEPGPLAGLTEQ 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E   L  I EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   AV   
Sbjct: 151 ERVLLDLIGEGLTNRQIAQRMFLAEKTVRNYVSRLLGKLGVERRTQAAVIAVSGG 205


>gi|290511715|ref|ZP_06551083.1| two-component system, NarL family, uhpT operon response regulator
           UhpA [Klebsiella sp. 1_1_55]
 gi|289775505|gb|EFD83505.1| two-component system, NarL family, uhpT operon response regulator
           UhpA [Klebsiella sp. 1_1_55]
          Length = 197

 Score =  108 bits (269), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 59/219 (26%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+          +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLGLEADFQVVAEFGS-----GREALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  ISGLELLSQLP-----------KGMATIMLSVHDSPALIEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVRTVAAGGCYLTPDIAMKLA----------------AGRQDPLTKRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIA  LG+S  TV+ + A+++ K            
Sbjct: 153 MAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARR 191


>gi|325929180|ref|ZP_08190322.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325540465|gb|EGD12065.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 213

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 23/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   ++    M  + E   G                +D  +      
Sbjct: 10  VLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYIRLRPDVVLMDLQMPRVDGV 69

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + ++ +          V      +    +      +         Y   +     +   +
Sbjct: 70  EAIQRIRQ--------VDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVDTI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R               +              D  L+ RE E L  ++ G ++ 
Sbjct: 122 RDVRRGQR--------------RHVPASVAENIAAHVLDDALSARETEVLNLVATGCSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I   L IS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 168 QIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGIL 209


>gi|325525188|gb|EGD03059.1| two-component regulatory system response regulator protein
           [Burkholderia sp. TJI49]
          Length = 215

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       + H+   +     +     +               AS   L+R  
Sbjct: 2   IRVLIADDHALVRDGLRHILQSASGFEVVGEAQDS---------------ASTIALMRDT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +       L         +       +       
Sbjct: 47  DANVLVLDLSMPGRNGVELIKQIRDEK-----PGLHIL---VLTMHAEQQYAVRAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   L  +   G  +      +         ++             L+
Sbjct: 99  SGYMTKESASAELVAALTKIAAGGVYVSLAMAEQFAQSLNEPTDLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE +    ++ G++  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 151 DREFDVFRRVTTGESISEIAQALCVSVKTVSTYKTRILEKMQLPNDTALVRYAMRHKL 208


>gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 210

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  + E   + V+ +   SD +  +           +   L               
Sbjct: 3   ISLLVADDHEVVRAGVAAMLLGSD-VKVIAEATSGNQAIEQAMKL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +             +   +    +          A   
Sbjct: 47  RPDVVLLDVRLPETDGLEALERILDRS--------PQTKVVMFTAYDNPTYIARAVALGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A +   +                E   L     N        + ++  LT
Sbjct: 99  AGFLMKGSTKADVLSAITRAHTGLP-------PENESLMGRVRNTMARRRPTYDEEIPLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REV+ L  ++ G ++ EI   L IS  TV  ++ +I+RK     R+ A  +AV+  +V
Sbjct: 152 NREVQVLRHVALGLSNREIGRSLDISIETVKEHVQNILRKLEAGDRTEAAVWAVKKGLV 210


>gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 205

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 15/188 (7%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A    L   D      +D ++  D P   +  +  +  D           +      +  
Sbjct: 25  AEASDLCGRDRPDLVLMDVMLPGDDPLPAMGEILRTYPDM--------RFVVFTALGSEA 76

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                     + Y         I   +  +      I          L   +        
Sbjct: 77  RAADAIRFGASGYLLKWCSPDGIVQAVRRVMAGRVHIDPS-------LDEARVASAAGGR 129

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT RE + L  I++G  + EIA +L IS+ TV+ +   +M+K   +  +  I
Sbjct: 130 TLAPPVDKLTRREKQILKLIADGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVI 189

Query: 238 AYAVRNNI 245
            +A R   
Sbjct: 190 HWAYRYGY 197


>gi|43289|emb|CAA27328.1| unnamed protein product [Escherichia coli]
          Length = 211

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 63/212 (29%), Gaps = 16/212 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
               +   +     +  + E   G       R +      +D  +      +  R +A S
Sbjct: 6   VRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARS 65

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                         +   V    P            Y S       +   +  ++   R 
Sbjct: 66  --------TADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRY 117

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           I  D   ++ L            +        L+ RE++ +  I++G+  +EI+  L +S
Sbjct: 118 IASDIAQQMALSQI-------EPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLS 170

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TVN+Y   +  K            A+R+ +
Sbjct: 171 PKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 202


>gi|54302058|ref|YP_132051.1| putative transcriptional regulator UhpA [Photobacterium profundum
           SS9]
 gi|46915479|emb|CAG22251.1| putative transcriptional regulator UhpA [Photobacterium profundum
           SS9]
          Length = 209

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 71/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + V          A+++ ++  +         +E      F  +         +D  
Sbjct: 3   ITVALVDDHLMVRSGFAQLLNVESDIEVKGEYGRASEA-----FAALSVSNIDVAVIDIS 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L+  +     +           +   ++ +              Y S     
Sbjct: 58  MPDESGLILLEKLRAKHPNF--------RAIILSIYDSASFVSKAIEAGACGYLSKRCGP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R +  D L+ +            +  +       LT RE E  T +
Sbjct: 110 VELVTAIRTVANGDRYLCADALFNL-----------SNAPITPKALDALTKREYEVFTHL 158

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +GK   E  +IL IS  T++ + A+I+ K         I +A+++ ++
Sbjct: 159 IQGKDVKEAGIILSISYKTIHVHRANILSKLGLSNNVDLIRFALQHKLL 207


>gi|312967916|ref|ZP_07782128.1| transcriptional regulatory protein uhpA [Escherichia coli 2362-75]
 gi|312287477|gb|EFR15385.1| transcriptional regulatory protein uhpA [Escherichia coli 2362-75]
          Length = 196

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSLLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTRRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|289705339|ref|ZP_06501735.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557854|gb|EFD51149.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 221

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 24/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + + H   +++ L  +   +  V        L               
Sbjct: 2   IRVVVADDQTLMRTALEHFVAQAEDLEVVGSAEDGVQALEAARTLA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++       +    A +        ++         F +    +       
Sbjct: 48  ------PDVVLMDMQMPRMDGVEATARISAEAPGVRVLAITT---FSSEQYLVPALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFEL 186
             Y       A +   +  +     +       ++                        L
Sbjct: 99  AGYLVKDAPPAEVVDAIRRVHAGDAVFSAPVAADLVEAVTAAPEHAAPCPAEPLAPHERL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ +  +++G ++ EIA  L ++  TV ++I  ++ K   + R   +  A R  +V
Sbjct: 159 TERELDVVRELAKGASNAEIAGALFLAEATVKSHIGKVLDKWQVRDRVQILIRAARAGLV 218


>gi|302547743|ref|ZP_07300085.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465361|gb|EFL28454.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 227

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 58/223 (26%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S T  +  + E   G     +          +D  +     
Sbjct: 17  RLLLCDDHAVVRAGLLALLSSTAGIEVVGEAGSGEEALAMAARVRPDVVLMDLQLGDGMD 76

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                    S           P  L   +F T  +           Y         +   
Sbjct: 77  GVEATRRLASGTGPTPPQEPAPRVLVLTMFDTDADIARAIEAGATGYLLKAERPEELFAA 136

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +       +                       L+ RE + L  ++ G  +
Sbjct: 137 IRNAAAGRTALSAPVADRL-------------MAQMRTPRPTLSERERDILQQLARGLGN 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 184 REIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVATGRRLL 226


>gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 216

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 14/224 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                   S  LA ++     +     ++      G +    V         +D  +   
Sbjct: 7   IADDQVLLSRALATILGSQPDLEVVATVHD-----GQAAVDTVAHTPVDLILMDVRMPKL 61

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                ++ +                 +    F+             N +     D   + 
Sbjct: 62  DGVAALKKIRAKPNPP--------KIVMLTTFNVPDTVKAALTAGANGFLLKDADPETLI 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++  D +  I   A   A       V  G    LT RE+E L  I EGK
Sbjct: 114 ESVRTVAAGQTVLAADVVGHILPGALTVAADTLPSHVQQG-LSLLTPREMEVLHAIGEGK 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA  L IS  TV  ++++++ K   + R      A +  +
Sbjct: 173 TNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKVGL 216


>gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 216

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         +     M  +     GA      R        LD  +     
Sbjct: 4   RVLIADDQVLVRTGFQMILDAQEDMEVVATAGNGAEAVEHARRLRPDVCLLDIRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A                +    F                +         +   
Sbjct: 64  LEATRILAGPGVP--DP----MRVVIVTTFDLDEYVYGALRAGATGFLLKDSGPTLLIEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +    A+                 LT RE++ +  ++ G+T+
Sbjct: 118 IRAAAAGDALVSPSVTVRLLEHLAHP-----RSGGARPLTEPLTERELDVVRLVARGRTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  L +S +TV  ++ SI  K   + R    A+A  + +V
Sbjct: 173 QEVAAELFVSLSTVKTHLGSIQAKLGARNRVEIAAWAWESGVV 215


>gi|126725039|ref|ZP_01740882.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2150]
 gi|126706203|gb|EBA05293.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2150]
          Length = 226

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 21/228 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M            +  + +     H +        EQ         +  +  +       
Sbjct: 1   MQQAKTLDDLQNVILGIRDLYDVEHLVYHSVKSTGEQYGVLT----YTDEWTQHYVEQNY 56

Query: 96  DKYYNVLQRPTELFCPVFH----------TLPENITPPAG-MDNRYCSLTFDVARIRIGL 144
           ++   V+    + F PV                      G  +          A      
Sbjct: 57  ERIDPVVLGCFQSFQPVTWKELDWSSKGSRRFLGEALDNGVGNQGLSVPIRGPAGQFALF 116

Query: 145 MLLF----PKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVECLTWIS 198
            +              +   ++ L+A Y  N                L+ RE + LT ++
Sbjct: 117 TVNDNCKDGCWAKFTAEHHRQMILIAHYLNNKALEIEHGKLMSPVKALSPRESDSLTLLA 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G +    A  L IS +T+  YI +   K  +   + A+A A+   ++
Sbjct: 177 MGYSRAHAADTLKISEHTLRVYIEAARFKLGSANTTHAVAAALSRGLI 224


>gi|153005603|ref|YP_001379928.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029176|gb|ABS26944.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 215

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 64/225 (28%), Gaps = 22/225 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASH----------FLLVRWDLFQEQKLDSIVSSD 81
           +  R I ++   + +  +  +    G               L R +      +D  +   
Sbjct: 1   MAIRAIAVEDDEAVSRLIAQVLTSHGFEVCGTAASGEEGVTLARRERPDVALVDLGLPKM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +                 +           +       + Y    F  A + 
Sbjct: 61  SGEDVIATIRHELPKTAC--------IALTAVDIPARVLAAMRAGASGYILKPFHAAELT 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +                +L +             G    L+ RE+E L  +  G 
Sbjct: 113 RAVEDVLSGDA--APISPRAAKVLLSELRGDPPDQKAKDGPA--LSKRELEVLQLLVHGH 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  ++A  LGI+  TV  Y+  I  K    T++ A   AV   +V
Sbjct: 169 TYADVAQALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLV 213


>gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 249

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 7/228 (3%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   + L+R    +          ++ + +      ++     +   LD  +
Sbjct: 24  RVVVVDDHPLWREALSR-DIAEAGFVVVGTAGSVAQAL-----RVLAATRPEIVVLDLGL 77

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +++R +  S +  Y       + L         + +       + Y   +    
Sbjct: 78  PDGSGVEVIRALVGSAESPYPLTGAPASVLVVSASGEQADVLEAVKAGASGYLLKSARPE 137

Query: 139 RIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            +   +        +         +G  +    N              LT REVE L  +
Sbjct: 138 ELVDAVRRTARGVAVFTAGLAALVLGENSRAARNSGSRSGPGSSTAPRLTAREVEVLRLV 197

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G ++ + A  LG+S  TV N++ +++ K   + R     +AVR   
Sbjct: 198 AKGLSARDAARQLGVSHRTVQNHVHNVLGKLQLRNRVELTRFAVREGY 245


>gi|318059560|ref|ZP_07978283.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079903|ref|ZP_07987235.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 265

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 69/268 (25%), Gaps = 52/268 (19%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + +  ++ L   +             G     LV         +D  
Sbjct: 3   ARVVVADDQSVVREGIVMLLGLLPGIEVVGSARD-----GEEAVRLVGELAPDVVLMDLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 +    +    +           Y +     
Sbjct: 58  MPRCDGVEATRRIRAEHPGTQ--------VVVLTTYADDQDLFPALRAGARGYLTKDAGG 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFE----------- 185
           A I   +  +      +       +   +A       ++     G+  E           
Sbjct: 110 AEIVRAIEDVLSGDAGLAPGIQRRLLDRIAGETPADLQAPPSSPGRPGEEGARGRAREAT 169

Query: 186 ---------------------------LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                                      LT RE E L  I++G ++ +IA  L +S  TV 
Sbjct: 170 SGRAEVRPSGSAGAVPPGPGGAVPPDGLTAREAEVLALIAQGLSNADIARALHVSAATVK 229

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I ++  K   + R+ A+ YA  + IV
Sbjct: 230 THINNLFAKAGLRDRAQAVRYAYLHGIV 257


>gi|319794782|ref|YP_004156422.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597245|gb|ADU38311.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 235

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 15/225 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-------QEQKLDSIVSSDWPFD 85
           L+  + ++   +   R+  +   +G     +   D         +++     +      D
Sbjct: 14  LSPALVVEDDPAMRERLAYVLSTLGCDEPQIAWADSVTAAKELLEDRDFGVALVDIGLPD 73

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRIGL 144
                 +     +   +               E I          Y     D   + I L
Sbjct: 74  GSGVELIGWMQAHRPRVPAVVVSA----WRTEEVIFAALRAGAIGYLLKERDDLELSIAL 129

Query: 145 MLLFPKGRIILRDRLWE-IGLLAAYQ--ANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +   G  I        +G +AA Q   +   + D        LT RE + L  +S+G 
Sbjct: 130 RSIEQGGAPIDPSIARRILGWIAAQQTSLSAVLASDAPSPLPVALTPRERKILELVSQGL 189

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++A  L ISR TV  +  +I RK A  +R+ A+    R+ ++
Sbjct: 190 SNRDMAESLSISRLTVECHTKNIYRKLAVTSRTEAVFQGRRHGLL 234


>gi|269959807|ref|ZP_06174185.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3]
 gi|269835420|gb|EEZ89501.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3]
          Length = 204

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 62/223 (27%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     + +++  +          +     GA               LD  +  
Sbjct: 1   MLVDDHPLMRRGIHQLLSFEPEFEVVAEASS-----GADAVAKAHELELDLVLLDLNMKG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D ++ +     +           +   V  +  +         + Y     +   +
Sbjct: 56  MSGLDTLKALRADGCE--------ARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDEL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L       +   +             A      +        LT RE + L  ++ G
Sbjct: 108 VELLKQAHEGDKAYSQA-----------VAKYLNEREGQEDVFDTLTDRETQILQEVARG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 157 FRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLER 199


>gi|83942258|ref|ZP_00954719.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
 gi|83846351|gb|EAP84227.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
          Length = 220

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 71/225 (31%), Gaps = 23/225 (10%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL------LVRWDLFQEQKLDSIVSSD 81
           T+   L +++ +D        + ++ E     + +          +   E   D I+   
Sbjct: 6   TQPPALIKVMIVDDHPMVAEGIQSILESYDDINVVGCLPNGRAAIESVAELDPDVILMDL 65

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++    A     +     +                 +  +     Y         I+
Sbjct: 66  NMPEIGGLSATEILLERQPDTRIVILSM---HDNPEYISSALSHGAMGYILKDVPTDEIK 122

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +  +    R +       +              +        LT RE   L  +++GK
Sbjct: 123 LAIDTVMRGERYLCTGAQGSL--------------EPKDAARESLTEREQTILLQLAQGK 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ E+A+ L IS  TV  +  +I RK    + +G   YA+ + ++
Sbjct: 169 SNKEVALTLDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVL 213


>gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 254

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 72/241 (29%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    +   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALHTLDACLDRVFGDVCALGFQSLVYDYAPVPLSMEGGLITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   +   P                   GM N    
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGNRPGVEYVGAQHRQVTRYLCDSGMGNGVTV 131

Query: 133 LTFDVAR----IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                      +   +  +  +   +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATLSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|312114265|ref|YP_004011861.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219394|gb|ADP70762.1| two component transcriptional regulator, LuxR family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 219

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E++++ + +  +     + V  +  R   +  +                    G +   +
Sbjct: 3   ELRRLRVFIADDHPVVLAGVRSVLDRDPDVEIVGEARD---------------GETTLRM 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +           L     +   V           
Sbjct: 48  AIGLKPAMMVLDLSMPGLNGVEVTRQLLAQ--------LPDCKVVVLTVHEDRAYLRKLI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   +  +   G  +          +AA+  +            
Sbjct: 100 EVGAAGYVLKRSVTDDLLRAIHAVASGGMYLDPS-------IAAHAVDRTLDSPSENATA 152

Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ REVE L + S G ++  IA IL IS  +V  Y A  M K     R G + YA+ 
Sbjct: 153 GADLSEREVEVLRFASVGHSNKAIANILTISVRSVETYKARAMDKLGLDNRVGLVGYAIE 212

Query: 243 NNIV 246
              +
Sbjct: 213 KGWL 216


>gi|311740351|ref|ZP_07714180.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304535|gb|EFQ80609.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 67/240 (27%), Gaps = 22/240 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +   D  R + V  +    D     + L   +     +    + VG            Q 
Sbjct: 1   MVDNDIDRRNVVIRVLLADDHEIVRLGLRSVLEGAEDI----DVVGEVATAEAAVSAAQA 56

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITPPAGM 126
             +D I+        V    +    +    ++              + T  + +      
Sbjct: 57  GGIDVILMDLRFGAGVEGTRVMGGAEATAQIRSAMATPPKVLVVTNYDTDADILGAIEAG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +         +       +                       L
Sbjct: 117 AVGYLLKDAPPHELLSAVRSTAEGDSALSPIVADRL-------------MTRVRTPRTSL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  ++ G ++ +I   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 164 TPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 223


>gi|237654658|ref|YP_002890972.1| transcriptional regulator NarL [Thauera sp. MZ1T]
 gi|237625905|gb|ACR02595.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 214

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 72/238 (30%), Gaps = 29/238 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +   +++  +       +  L         +                    GA   +L R
Sbjct: 3   ESCRVLIVDDHPLFRRGLVQLLRTIPAFVLVGEAAS---------------GAEGLVLAR 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D++R +  +  +           +   V  +  + +    G
Sbjct: 48  ELRPDLVLLDLNMRDGDGLDMLRGLRAARSE--------ARVVMVTVSDSGEDVVAALRG 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     +   +   L  +     +I         LLAA      +           
Sbjct: 100 GAEGYLLKDMEPEAMLEALQAVAAGRVVIPPQLN---HLLAAALRGESRPQSAGA---AG 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT +E+  L  I+ G  + +I   L I+  TV  ++  I+RK   ++R  A  +AV +
Sbjct: 154 LTEQELRILEKIAAGLPNKQIGRELDIAEGTVKVHVKHILRKLELRSRVEAAVWAVEH 211


>gi|117624057|ref|YP_852970.1| response regulator [Escherichia coli APEC O1]
 gi|115513181|gb|ABJ01256.1| response regulator [Escherichia coli APEC O1]
          Length = 206

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 63/210 (30%), Gaps = 16/210 (7%)

Query: 37  IPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             +   +     +  + E   G       R +      +D  +      +  R +A S  
Sbjct: 3   AGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARS-- 60

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +   V    P            Y S       +   +  ++   R I 
Sbjct: 61  ------TADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIA 114

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            D   ++ L            +        L+ RE++ +  I++G+  +EI+  L +S  
Sbjct: 115 SDIAQQMALSQI-------EPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPK 167

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TVN+Y   +  K            A+R+ +
Sbjct: 168 TVNSYRYRMFSKLNIHGDVELTHLAIRHGL 197


>gi|332978107|gb|EGK14844.1| nitrate/nitrite response regulator protein NarL [Psychrobacter sp.
           1501(2011)]
          Length = 219

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 74/233 (31%), Gaps = 21/233 (9%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+V       +   V   P     +A ++ L+   +    + +     G      ++ + 
Sbjct: 3   NVVYTSTSPAKILLVDDHPMLRRGMADLLSLEPDFNVVADVSS-----GEETLAYLKDND 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D V+ +             +   L   V  +  +         N
Sbjct: 58  VDLIILDQNMPGLSGLDTVKQIRDQGN--------QAKILMFTVSDSGDDIHNALKLGVN 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y        ++ + +        ++       +                       LT 
Sbjct: 110 GYLLKDMQPEQVALDIRKALRGELVVSSRLAAVLA--------QALRTPNLDDIVSNLTS 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE++ +  I++G+++  I   LGIS +TV  ++  I+ KT  +TR     +AV
Sbjct: 162 RELQVVKMIAKGQSNKMIGNELGISESTVKVHVKHILNKTNLRTRVDVAVWAV 214


>gi|152972576|ref|YP_001337722.1| DNA-binding transcriptional activator UhpA [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206578067|ref|YP_002235913.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae 342]
 gi|238897178|ref|YP_002921926.1| DNA-binding transcriptional activator UhpA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040431|ref|ZP_06013674.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288932920|ref|YP_003436979.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|330005258|ref|ZP_08305212.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Klebsiella sp. MS 92-3]
 gi|150957425|gb|ABR79455.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|206567125|gb|ACI08901.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae 342]
 gi|238549508|dbj|BAH65859.1| two-component regulatory system response regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259042184|gb|EEW43212.1| transcriptional regulatory protein UhpA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288887649|gb|ADC55967.1| two component transcriptional regulator, LuxR family [Klebsiella
           variicola At-22]
 gi|328536305|gb|EGF62672.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Klebsiella sp. MS 92-3]
          Length = 197

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 59/219 (26%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+          +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLGLEADFQVVAEFGS-----GREALTGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  ISGLELLSQLP-----------KGMATIMLSVHDSPALIEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVRTVAAGGCYLTPDIAMKLA----------------AGRQDPLTKRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIA  LG+S  TV+ + A+++ K            
Sbjct: 153 MAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARR 191


>gi|160878241|ref|YP_001557209.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426907|gb|ABX40470.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 212

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 32/235 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  + +     +  + +       +                    G     L 
Sbjct: 1   MEPIKVIIADDSDFVRDGMRIILSVDPDFEVVGCAKN---------------GKEAVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  + + L               L    F           
Sbjct: 46  SKSSVDVILMDIEMPVMNGIEATKEIVLHNL---------GKVLILTTFDDDELVEQSIQ 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y        +++  +  ++    ++      +    + +    F           
Sbjct: 97  NGAKGYLIKNHTPEKLKQMIKSIYNGVNVLDEKVFEKFTSRSIHTNTGFDPNGY------ 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             T RE++ +  ++EG ++ EIA  L IS  TV N+I++I+ K     R+    Y
Sbjct: 151 --TTRELDIIASVAEGLSNKEIAKKLFISEGTVKNHISTILEKGGFSHRTQLAVY 203


>gi|283784182|ref|YP_003364047.1| two-component system response regulator protein [Citrobacter
           rodentium ICC168]
 gi|282947636|emb|CBG87191.1| two-component system response regulator protein [Citrobacter
           rodentium ICC168]
          Length = 209

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 75/229 (32%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +     +   A     +  D      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEEDLEVAGQFSRAADAWPA-----LLRDDVSVAVMDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +         +   +   ++ +     +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQK--------PQFRAIILSIYDSPTFVQSALTAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D L  +           +  +    +   LT RE E    +
Sbjct: 109 EELVQAVRSVGLGGHYLCADALRAL-----------RGGEQLPPELEALTPREREVFNLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ Y A+++ K    +    + +A+ + ++
Sbjct: 158 VKGDSVKEIAFKLDLSHKTVHVYRANVLGKLNCHSTIELVHFALDHKLL 206


>gi|156976607|ref|YP_001447513.1| transcriptional dual regulator NarL [Vibrio harveyi ATCC BAA-1116]
 gi|156528201|gb|ABU73286.1| hypothetical protein VIBHAR_05381 [Vibrio harveyi ATCC BAA-1116]
          Length = 204

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 62/223 (27%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     + +++  +          +     GA               LD  +  
Sbjct: 1   MLVDDHPLMRRGIHQLLSFEPEFEVVAEASS-----GADAVATAHELELDLVLLDLNMKG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D ++ +     +           +   V  +  +         + Y     +   +
Sbjct: 56  MSGLDTLKALRADGCE--------ARIVILTVSDSPADIEAIVRSGADGYLLKDTEPDEL 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L       +   +             A      +        LT RE + L  ++ G
Sbjct: 108 VDLLKQAHEGDKAYSQA-----------VAKYLNEREGQEDVFDTLTDRETQILQEVARG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             + +IA  L IS +TV  ++ S+++K    +R+ A    +  
Sbjct: 157 FRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLER 199


>gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 222

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 68/218 (31%), Gaps = 16/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL------FQEQKLDSIVSSDWPFDLVR 88
           R+  +  +      + AL E   A  FL    D             D IV+   P     
Sbjct: 13  RVAVIAASWQERASLQALVEANPALEFLASAADAEKLVDCLAGSVPDVIVTDIAPEPSDA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L E       L        P    + + +                 A I   +  + 
Sbjct: 73  LKTLFEVSHASPSLVLL--SDDPDSDWMLDALPAD---AMAILPRNAMPAEIVASIEAVA 127

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  D L  +                       LT RE+E L  +++G  + EIA 
Sbjct: 128 AGLCVLTPDILARL-----LAETRPSRQKAPAEPFEALTLREIEVLAMLADGLGNKEIAR 182

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS NTV  +++SI  K     R+ A+   +R+  +
Sbjct: 183 QLDISDNTVKFHLSSIFGKLGATNRTEAVMLGMRHGFI 220


>gi|239944305|ref|ZP_04696242.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990759|ref|ZP_04711423.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447772|ref|ZP_06587162.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291350719|gb|EFE77623.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 216

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 14/224 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +S    +    E   G +   L R        +D  +     
Sbjct: 4   RVLVAEDQAAVRAGLVLILSSAPDIEVAGEAGDGEAAVRLARELRPDLVLMDVQMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +   E             L    F              + +     D   +   
Sbjct: 64  VSATRQVVAEELAD---------VLVLTTFDLDEYVFGALRAGASGFLLKNTDARELLEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           +  +     +I       +  +A +                   LT RE E L  + EG 
Sbjct: 115 VRTVARGEGLIAPAVTRRL--IAEFAGTTPVRTRETADPVVLDTLTRREREVLGCLGEGL 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 173 SNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 216


>gi|271966802|ref|YP_003340998.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509977|gb|ACZ88255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 68/223 (30%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA+   +VR        +D  + +   
Sbjct: 4   RVVIADDEDLIRAGLRIIIDSEPDLTVVGEAADGAAVVPVVREHRPDVVLMDVRMPAVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A           + P  +    F              + +       A +   
Sbjct: 64  IQATRRLASLP--------EPPKVVVVTTFENDDYVYEALRAGASGFLLKRTRPAELVQA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++    +  +           +           LT RE + L  ++ G ++
Sbjct: 116 IRTVAAGDSLLFPAAIRALA--------ARREAVRAVPGIDRLTSREADVLRLMTRGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++ +++ K   + R+ A+  A  +  V
Sbjct: 168 GEIAGELVISMETVKTHVGNVLAKLEARDRTRAVITAYESGFV 210


>gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 253

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 66/233 (28%), Gaps = 16/233 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-DSIVSSDWPFDLVR 88
            +L+          S      A  +  G                L     +         
Sbjct: 13  DELVQCCQDAMTAASLLACGLAYYQPHGIDLVSYHGDSTGAPAILYRYEATGAETPRWHS 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN-------------RYCSLTF 135
                E  +   V     +   PV+ +           +                     
Sbjct: 73  RFLDVETLRESPVEAIARQQVLPVYWSAVSKEARLTRAERAYMDRLLGRYPNDGISLKVH 132

Query: 136 DVARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVEC 193
                   + L    K   +    L+++   A      +    +    +DF L+ REVE 
Sbjct: 133 GPGGDSAVVGLGFAAKQARLSSIALYKLLCAAQIAHLRYCALAESQSPRDFGLSPREVEV 192

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L WI+ GK++  IA ILGIS +TV+  +  I  K     R+ A    +   ++
Sbjct: 193 LEWIATGKSNGVIAEILGISPHTVDTIVRRIFAKLDVNDRTTAAIRGLGAGLL 245


>gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 215

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 11/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D     + +   +  +     ++   G     LV          D  +     +D
Sbjct: 5   ILVVDDDFGTRLSISDYLEISGY-TVISAENGQEALELVDKHKPHLIVTDITMPEMDGYD 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+ +            +    +F      +   I       + Y    F++  +   ++
Sbjct: 64  LVKRIRSR------PAFRLLPVIFLTAHTAIQSRIRGYQLGCDNYLPKPFELDEL-GVVI 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +   ++   L      +    N        +  +  LT RE + L  ++EG+++ +
Sbjct: 117 RALLERSQLIESELRSRVSESPVVTN---GATSTFSHEISLTEREQQVLDLLTEGRSNVK 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I   L +S  T+  Y++S++RKT +  R+  + +A++N+++
Sbjct: 174 IGEKLHLSPRTIEKYVSSLLRKTESNNRAELVRFALKNHLI 214


>gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b]
 gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b]
          Length = 258

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 67/228 (29%), Gaps = 17/228 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
                     +  + +     G S           +      + + +  D          
Sbjct: 26  FSRFSSLKEVSDFLASGLGDYGISDVTYYTPKSKVKGGGAGRLITTYSQDWQDHYFEMSY 85

Query: 96  DKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMD-NRYCSLTFDVARIRIGL 144
                V++   + FCP+  ++                  G+                  +
Sbjct: 86  QDKDPVIEMGQQSFCPIDWSILKDRCGDTKKMFGEAREFGVSDRGVVIPMRGHLGEITLI 145

Query: 145 M----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWIS 198
                L   +    L     E    A        S   + G  ++  LT RE + L W +
Sbjct: 146 SMTSDLGGSEWVKYLSAHKSEFVNFAFCLHGSILSLSANTGGKEEPRLTVREKQVLQWAA 205

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKTS E A+IL +S  T+  YI   + K    T++ A+  A+   ++
Sbjct: 206 FGKTSWETAMILELSERTIETYIGKAVAKLEASTKAHAVCKALSLGLI 253


>gi|288918501|ref|ZP_06412852.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350141|gb|EFC84367.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 231

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 70/236 (29%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     +  L +    +  +            +                  
Sbjct: 24  IRVFLLDDHEVVRRGLRDLLSDEADIVVVGEAGRADDAIAEI---------------IML 68

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      ++ R +     +    +L          F       T      
Sbjct: 69  RPDVAVLDARLQEGSGIEVCRHVRSHAPEIACLIL--------TSFDDEDALFTAIMAGA 120

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++            +      +   V   +   LT
Sbjct: 121 AGYVLKQIRGNALVDAVRQVAAGQSLLDPAVT-------SRVLYRLREGPVEDERLSGLT 173

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L+ I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A + 
Sbjct: 174 DQERRILSLIAEGLTNRQIAARMFLAEKTVKNYVSSMLAKLGMESRTQAAVFATKL 229


>gi|256376044|ref|YP_003099704.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920347|gb|ACU35858.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 62/235 (26%), Gaps = 30/235 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  + E     V  L    D L  +           R+                   
Sbjct: 4   RVFLVDDHEVVRVGVRELLNSDDELEVVGEAGSVAEALARV---------------PASG 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L R +     D           L    F              +
Sbjct: 49  ANVAVLDVRLPDGNGIELCRELKSLMPDLQC--------LMLTSFTDDEALFDAIMAGAS 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +         +   +  +     ++       +        N  +           LT 
Sbjct: 101 GFVLKRILGTDLCTAVRTVASGQSLLDARSTSAL-------LNRIRREREQGDPIRMLTE 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +E   L  I +G T+ +IA  + ++  TV NY++ ++ K   + R+ A   A + 
Sbjct: 154 QERTVLDLIGQGMTNRQIAESMFLAEKTVKNYVSHLLAKLGLERRTQAAVLASKL 208


>gi|305680308|ref|ZP_07403116.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305659839|gb|EFM49338.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 212

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   +D +  +  +    +         +  G    L+    
Sbjct: 2   IRVLLADDHEIVRLGLRAVLESADDIEVIGEVATAEAAIAA----AQAGGIDVILMDLRF 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               +       +D   ++ R M                 L    + T  + +       
Sbjct: 58  GPGVEGTRLATGADATAEIKRTMEKPPH-----------VLVVTNYDTDADILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +                       LT
Sbjct: 107 LGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRL-------------MTRVRTPRTSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A +  ++
Sbjct: 154 PRELEVLKLVASGSSNREIGRALLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212


>gi|224369897|ref|YP_002604061.1| two-component response regulator protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223692614|gb|ACN15897.1| two-component response regulator protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 218

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 68/244 (27%), Gaps = 28/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + I+L  + +     +         +  +                    G     
Sbjct: 1   MNQNPITILLVDDHDILRQSLKKALEEKPNVKVLQGACN---------------GLDAVR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +      +  + +     D           +   +        + 
Sbjct: 46  LTEKHCPNIVIMDINMPDLNGIEAAKQIISKNPDI--------KIIALSMLCDEFNVKSM 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +   T  +  +   ++++      +  + L  +        +           
Sbjct: 98  IQAGAKGFLLKTSSLEDLHTAILMVASGKSYLCPEALNIMMEDIQTPGD-----TKLLCP 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE   +  I+EG TS EI+  L IS+ TV+ +  + M K    T +G   +AV+
Sbjct: 153 LQRLTLRERGVIQLIAEGYTSQEISEKLNISKRTVDVHRTNTMNKLKIHTIAGLTRFAVK 212

Query: 243 NNIV 246
             ++
Sbjct: 213 EGLI 216


>gi|218691961|ref|YP_002400173.1| DNA-binding transcriptional activator UhpA [Escherichia coli ED1a]
 gi|218429525|emb|CAR10348.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Escherichia coli ED1a]
          Length = 196

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +          D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVLVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAIKLA----------------SGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|297202823|ref|ZP_06920220.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717613|gb|EDY61647.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 217

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     +  + E   GA    L R        LD  +    
Sbjct: 5   TRVLLADDHTLVRRGVRLILEGEPDLTVVAEAGDGAEAVELARAREVDLAVLDIAMPRMT 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +           L     L   ++              + Y   +     +  
Sbjct: 65  GLQAAREL--------SRRLPELRILILTMYDNEQYFFEALKAGASGYVLKSVADRDLVE 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      +       +        +     D    +    T RE E L  ++EG T
Sbjct: 117 ACRAAVRDESFVYPGAERAL---VRSYLDRLHRGDDLPRRAV--TEREEEILKLVAEGHT 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI  +L IS  TV  + A+++ K   + R     YA+R  ++
Sbjct: 172 TKEIGELLFISAKTVERHRANLLHKLGMRDRLELTRYAIRAGLI 215


>gi|311897256|dbj|BAJ29664.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 219

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 67/237 (28%), Gaps = 31/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     V  L +    +  +           R+ A+               
Sbjct: 7   IRVFLLDDHEVVRRGVHDLLSMEGDIEVVGEAGTAAEALNRIPAV--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +           ++         F              
Sbjct: 52  HPDVAVLDVRLPDGNGVEVCREIRSQ-----DPSVKCLM---LTSFSDDEALFDSIMAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFEL 186
           + Y         +   +  +     ++            +      +        +  +L
Sbjct: 104 SGYVLKAIRGTDLLSAVRDVAAGKSLLDPVAT-------SRVLARLRDGGEKEDERIAQL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T +E   L  I EG T+ +I   L ++  TV NY++S++ K   + R+ A AY  R 
Sbjct: 157 TKQERRILDLIGEGMTNRQIGNELHLAEKTVKNYVSSLLAKMGMERRTQAAAYVARR 213


>gi|291002981|ref|ZP_06560954.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 213

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 20/226 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V         +A ++  +  +        + E +      LV         LD  + 
Sbjct: 1   MFVVDDHEVIRRGIAALVNAESDLELIGEASTVAESL-----ALVPQANPDVAVLDVRLP 55

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L R +                 L    F      +         +         
Sbjct: 56  DGNGVELCRELQSRRPGLRC--------LMLTSFDDHDALMDAIIAGAAGFVLKGVVSEE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        ++   +   +           +          ELT RE E L  I E
Sbjct: 108 LVNAIRTAGSGESLLSAKKTEAM-------LAWLRREQEQADPLRELTAREREVLELIGE 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+ EI+  + ++  TV NY++ ++ K A + RS A   A    +
Sbjct: 161 GLTNREISQRMFLAEKTVKNYVSQMLSKLAMRHRSEAAVLATELRL 206


>gi|320009389|gb|ADW04239.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 26/229 (11%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R             L  ++  +  +       +     G     L          +D  +
Sbjct: 6   RILLCDDHAVVRAGLLALLGGEPDIDVVGEAGS-----GEEAVALAAQLTPDVVLMDLQL 60

Query: 79  -SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
            S     +  R +A +              L    + T  +           Y       
Sbjct: 61  GSGIDGVEATRRIATAGAG-------AVNVLVLTTYDTDADITRAIEAGATGYLLKAERP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +         +          +A+      +S          LT RE++ L  +
Sbjct: 114 EELFAAIRAAAQGRTTLSP-------PVASRVMARMRSPRP------TLTERELDILGQL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S+G  + +IA  L IS  TV  ++  I  K    TR+GA++ A    ++
Sbjct: 161 SQGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVSVAKEQRLL 209


>gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 240

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 80/243 (32%), Gaps = 21/243 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++       L + 
Sbjct: 4   AMTESATRDLLIQQMVSTISELDGQTAIENALEWLRRECNSERAMFFQFKGP---LLLTF 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------------FCPVFHTLPENITPP 123
           ++S+            +      V++                       +  L +     
Sbjct: 61  ITSNVDEAWGDAYRQHDLIMQDPVIRCYRNQLGFLNWQDAFRQYPVSAFYDELVDACELL 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   Y +     A     +  L    R I  ++ + +  L     ++ +         
Sbjct: 121 PAISYGYTN-HCRGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFC---S 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+  
Sbjct: 177 RGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCR 236

Query: 244 NIV 246
            ++
Sbjct: 237 GLI 239


>gi|119774744|ref|YP_927484.1| response regulator [Shewanella amazonensis SB2B]
 gi|119767244|gb|ABL99814.1| two component transcriptional regulator, LuxR family [Shewanella
           amazonensis SB2B]
          Length = 214

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +                    G +     + +
Sbjct: 2   ISVYLVDDHELVRTGIRRILEDERGIKVVGEAPD---------------GETAVSWSKQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 47  EADVVLMDMNMPGIGGIEATRKILRYQ--------PHARIIVLSMHTEDPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    R +  +   ++ L         +          +++
Sbjct: 99  FGYLTKGAKPPEVLQAIRQVACGQRYLSPEIAQQMAL--------SQLTQTDENPFKQVS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I      ++IA  L +S  TVN+Y   +  K    +       A+R+ I+
Sbjct: 151 ERELQIAMMIINSMKVNDIAEQLNLSPKTVNSYRYRLFAKLGISSDVELTRLAIRHKII 209


>gi|159037739|ref|YP_001536992.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916574|gb|ABV98001.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 240

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 13/228 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R          SD L  ++  +  V       +     GA   +L R            
Sbjct: 3   LRVLICDERTLVSDGLRTLLEGETDVQVIGGTGS-----GAEAIVLAREGRPDVLLTGLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +     +    V+         +  ++ + +       N   +     
Sbjct: 58  LQDMSGGEFLRRLREGGAELCPPVVVYALGE---ITDSMVDLV---RAGANGVLAEDASK 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A + I +  +     ++         +L   +++       +      LTGRE E L   
Sbjct: 112 AELLIAVRAVASGHAMLGPPVARR--MLDWLRSSDDPVGVPYPAVANNLTGREREILLLT 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G ++DEIA  L IS  TV  ++  +  K   K R+  + +A +  +
Sbjct: 170 ARGLSADEIAGRLFISVATVRTHLYRLRCKLQLKDRAQLVTFAYQTGL 217


>gi|291085787|ref|ZP_06354060.2| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC
           29220]
 gi|291069848|gb|EFE07957.1| transcriptional regulatory protein UhpA [Citrobacter youngae ATCC
           29220]
          Length = 230

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 74/214 (34%), Gaps = 24/214 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
            A+++ L+  ++ T +  +  E   A     +  D      +D  +  +    L++ +  
Sbjct: 38  FAQLLSLEDDLNVTGQFSSAAEAWPA-----LLHDDVNVAVMDIAMPDENGLSLLKRLRA 92

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +             +   ++ +     +      + Y +       +   +  +   G 
Sbjct: 93  QKPGF--------RAIILSIYDSPTFVQSALDAGASGYLTKRCGPEELVQAVRSVGMGGH 144

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +  D L  +           +  +        LT RE E    + +G +  EIA  L +
Sbjct: 145 YLCADALRAL-----------RGGEQPAQVLEVLTPREREVFDLLVKGDSVKEIAFKLDL 193

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV+ + A+++ K    +    + +A+ + ++
Sbjct: 194 SHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 227


>gi|256396450|ref|YP_003118014.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362676|gb|ACU76173.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 211

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 70/246 (28%), Gaps = 35/246 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +   + +++  +     + ++ +      L  +                    GA  
Sbjct: 1   MSEQAGNLRVLIVDDHPVVRAGLTGMLAAEPDLDVVAEAAD---------------GAEA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L    +     +D  ++     +    +A +              L    + T  + +
Sbjct: 46  VRLALELVPDVVLMDLRMAGVDGVEATARLAAAAPAI--------RVLILTTYDTDADIV 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y       A +   + L      ++      ++        +  +      
Sbjct: 98  RAVEAGATGYLLKDTPRADLAEAVRLAARGETVLAPAVAAKL-------VSRLRQPAAQP 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE E L  ++ G  + EI   L IS  TV  ++     K     R+ A+  A
Sbjct: 151 -----LTPREREVLALVARGLANAEIGRELFISEATVKTHLVRAFGKLGVDDRTAAVTKA 205

Query: 241 VRNNIV 246
           +   ++
Sbjct: 206 MAQGLL 211


>gi|318061834|ref|ZP_07980555.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 221

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R           + LA ++ L   +             G      V         +D
Sbjct: 9   RPLRVVVADDQAAVREPLAAVLGLAEDIDVVAAA-----ADGNGVLEAVAAGPVDVVLMD 63

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R ++                +    F      +         Y +   
Sbjct: 64  LRMPVLDGIETTRRLSEEH--------PGVAVVVLTTFADDDSILAALGAGARGYLTKNA 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   +        ++ R+    +           +      G   +LT RE E LT
Sbjct: 116 GRQDIVRAIRAAAAGQSVLDREVQDRLLATV-----RARPTASGQGLPADLTPREREVLT 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I +G  +  IA  L +S  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 171 LIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 220


>gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
 gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 260

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 71/215 (33%), Gaps = 15/215 (6%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  L    G              +     V + +P   V    L+   K   ++++  
Sbjct: 44  AAIRILQAEYGLDFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLLNSYVKVDPIVKQGF 103

Query: 107 ELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRIGL----MLLFPKGR 152
           E   P   +  E                   N Y     D A+ R  L     +      
Sbjct: 104 ERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNARIPADGWS 163

Query: 153 IILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++R    E   +A                    L+ RE+ECL W + GK   +I+VILG
Sbjct: 164 ELVRRCRNEWIEIAHLIHQKAVYELYGEHDPVPALSPREIECLHWTALGKDYKDISVILG 223

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 224 ISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 258


>gi|88799767|ref|ZP_01115341.1| two-component response regulator NarL [Reinekea sp. MED297]
 gi|88777501|gb|EAR08702.1| two-component response regulator NarL [Reinekea sp. MED297]
          Length = 213

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 14/222 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +     ++ + E   A     +V         LD  +   
Sbjct: 1   MTDIIIIDDHPMLRKGLSQLLDLEDDLHLVAEVGEAQDAVRIVTEHEPDLILLDLNMPGQ 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  +  +  D           +   V     +         + Y     D     
Sbjct: 61  DGLQTLNKLRDAGVD--------ARIIVFTVSDDQADIHRAIHNGADGYLLKDIDPEEFL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +       +++         ++ +  +           +D  LT RE + L  I+ G 
Sbjct: 113 ESIKRCMQGEQVVSPGI---QDVVRSALSKRLPENLHPALRD--LTDREKDVLRLIAAGL 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +  I   L I+  TV  ++  ++ K   ++R  A  +A  +
Sbjct: 168 PNKSIGQNLDIAEGTVKVHVKRVLSKLGLRSRVEAAIFAHEH 209


>gi|328542623|ref|YP_004302732.1| Two component transcriptional regulator, LuxR family [polymorphum
           gilvum SL003B-26A1]
 gi|326412369|gb|ADZ69432.1| Two component transcriptional regulator, LuxR family [Polymorphum
           gilvum SL003B-26A1]
          Length = 233

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 17/225 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               +   P   D L   + +   ++      +L++ +G    LL          LD  +
Sbjct: 19  TVLVIDDHPLFCDALVLTLRMAFALTDVRTANSLSQALG----LLSGGLRPDAVVLDLNL 74

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + +  +     D    V+    +                A     +     D  
Sbjct: 75  PDVSGSEGLVALRRRLPDVPITVVSALMKPRL--------VSASLAAGACGFVPKDVDRE 126

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +      ++     I      E       +  +  S      +   LT ++ + L  + 
Sbjct: 127 HMCAAFRKMWSGEVYIPDGYTPE-----EAEGELVLSQQDILSRLATLTPQQTKILKLVC 181

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            GK +  IA  L I+  TV  ++ +I+RK    +R+ A+  A   
Sbjct: 182 AGKPNKLIAYDLSIAETTVKAHVTAILRKLGAHSRTQAVLVAKEA 226


>gi|325964863|ref|YP_004242769.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470950|gb|ADX74635.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 217

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +     + +  + T  + +          +    +  L           V
Sbjct: 1   MTNVQVLLVDDHPVVRAGLRAMLTEFEGITVAAEAADGRAALKELSRLA----------V 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  +      D V   A   +            L    + T  + +    
Sbjct: 51  LGEAVDVVLMDLQM--GAGMDGVTATAEIRRLAAPP-----PVLILTTYDTDADILAAVE 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y        +IR  ++       ++       +              +       
Sbjct: 104 AGASGYMLKDAPPEQIRQAVLAAAAGETVLAPRAAALL-------------MNRISNPGT 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REV+ L  ++ G ++  IA  + IS  TV  ++  I  K     R+ AIA A +  
Sbjct: 151 SLTPREVQLLELLATGLSNRAIAKQVFISEATVKTHLVHIYGKLGVDNRTAAIAAATQRR 210

Query: 245 IV 246
           I+
Sbjct: 211 II 212


>gi|260768673|ref|ZP_05877607.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP
           102972]
 gi|260616703|gb|EEX41888.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP
           102972]
 gi|315180374|gb|ADT87288.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 188

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           + Q  D ++       +    A  +  ++   ++    +   V    P            
Sbjct: 18  RSQHADVVLMDMNMPGIGGLEATKKILRFNPDVKI---IVLTVHTENPFPTKVMQAGAAG 74

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +       +   + ++    R I  +   ++ L     A+             +L+ R
Sbjct: 75  YLTKGAAPDEMVNAIRVVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLSER 126

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ ++
Sbjct: 127 ELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFAKLDISGDVELTHLAIRHGML 183


>gi|302558364|ref|ZP_07310706.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475982|gb|EFL39075.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 213

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 2   IRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAGD-----GERAVALARELRPDVVLMDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F                +     + 
Sbjct: 57  MPRLDGVSATRQVVGEGLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNTEA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+       +  +A + A   +           LT RE E L+ +
Sbjct: 108 KDLITAVRTVAAGEGIVAPAVTRRL--IAEFAAKPARPVTADPAVLDSLTRREREVLSCL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++  IA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 166 GEGLSNAGIADRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 213


>gi|298490276|ref|YP_003720453.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232194|gb|ADI63330.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 240

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 75/257 (29%), Gaps = 33/257 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +++I+L  + +     +      +  L  +            +               
Sbjct: 1   MNEISILLIEDHDLTRMGLRAALQSNSALKVIGEAANATQGLKLLETT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R     + +   +  +        + HT    +   A
Sbjct: 49  ---KPDVAVVDIGLPDMDGIELTRKFKRQQAETGQSNTKIL---ILTMNHTEDAVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------------- 170
              + Y      + ++   +   +     I       +                      
Sbjct: 103 AGADSYYMKETSINKLTEAIQATYAGNSWIDPAIANVVLRKMRLGIPGESTAADKPKTVK 162

Query: 171 -NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                +      + + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K  
Sbjct: 163 IEALATEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLC 222

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 223 ADDRTQAAVRALRSGLV 239


>gi|187777587|ref|ZP_02994060.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
 gi|187774515|gb|EDU38317.1| hypothetical protein CLOSPO_01179 [Clostridium sporogenes ATCC
           15579]
          Length = 218

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 27/223 (12%)

Query: 22  FVSHLPTRSDLLAR-----MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
            +  L    D+  R     ++ +D  +     +       G       R +      LD 
Sbjct: 9   VIKVLIADDDVFIRESLSIILDMDEDIKIEKTVEN-----GLQAVEYCRNNKIDIALLDI 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  + ++                L    F                Y      
Sbjct: 64  RMPVMNGVEATKIISKEGY---------GKVLILTTFDEDDYIREALHFGAKGYILKNNT 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   + +++    +I    +           N   S   +  KD   + RE++ +  
Sbjct: 115 PDTIIDTIKMVYKGNSVIQDVVM-------DKVLNSCNSNIKNIDKDM-FSRREIDVIEA 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ISEG ++ EI+  L IS  TV NYI+SI+ KT  + R+    Y
Sbjct: 167 ISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQIAIY 209


>gi|194365304|ref|YP_002027914.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348108|gb|ACF51231.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 215

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + +    +  +   +        +  L               
Sbjct: 3   IRVYLVDDHALVRTGMKMILSGETDIEVVGEAETGEDALREVRQLL-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +  S ++    ++    +   P                
Sbjct: 49  -PDVVLCDLHLPGVSGMEVTERIVRSHRNTRVVIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +  +    R +       + L          + + +      L+
Sbjct: 100 AGYIGKGCDAQELLRAVRDVAGGRRYLGTSIAQNLAL---------STVEGNGSPFDSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G   ++IA  L +S  TVN + A +  K            A +  +V
Sbjct: 151 PRELEVALLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209


>gi|172065471|ref|YP_001816183.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171997713|gb|ACB68630.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 215

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       + H+   +   A       +               AS   LVR  
Sbjct: 2   IRVLIADDHALVRDGLRHILQNASGFAVAGEACDS---------------ASTIALVRGT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +             L   +       +       
Sbjct: 47  DANVLVLDLSMPGRNGVELIKQIRDEK--------PALHVLVLTMHAEQQYAVRAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   L  +   G  +      +         ++             L+
Sbjct: 99  SGYMTKESASAELVAALTKIAAGGVYVSLTMAEQFAQSLNEPTDLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    ++ G++  EIA  L IS  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 151 DREFEVFRRVTIGESISEIAQALCISVKTVSTYKTRILEKMQMPNDTALVRYAMRHKL 208


>gi|83593567|ref|YP_427319.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576481|gb|ABC23032.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 212

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   + +       D    ++  D                     L     
Sbjct: 1   MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIR--------------LATEDG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              +  LD ++      D    ++   +      +   +         +    +      
Sbjct: 47  PVSKVFLDLMMPDM---DWREALSALRRLPDPPDVVVLSG-----ADDVAMIRSAIDHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   L L+   G  I  +             +         G D  LT
Sbjct: 99  CGYIPKSLKGDVLESALRLILAGGFYITPEVYR-----GPRVYDGAVRIMGVGGDDVPLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ E L  I  G ++ +IA  + +S  TV  +I  + +    ++R+ A+A A R  ++
Sbjct: 154 PRQKEVLAHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRTDALAVARRKGML 212


>gi|311280576|ref|YP_003942807.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308749771|gb|ADO49523.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 210

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++           +               
Sbjct: 1   MKPSSVIIMDEQPIVRMSIEILLQKNKNIQVVLKSGNGREVLEHVRK------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +            +R   LF               
Sbjct: 48  --HPTDLVILDVELPGTDGFSLLKRINEIN--------RRTKVLFLSSKSENFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + +L         D L  +        +  +        + 
Sbjct: 98  AGANGFVSKRKDQNDIYKAVEMLLSGYSFFPADTLSALS------RSHIRRGSK---TEL 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G T+ EIA  L +S  T++ + ++I  K   +T    I YA  + 
Sbjct: 149 PLSNREVMVLRYLANGLTNKEIADKLLLSNKTISAHKSNIFSKLGVRTIVELIDYAKAHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|326777702|ref|ZP_08236967.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658035|gb|EGE42881.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 226

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 62/240 (25%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +++  ++    + V  +  R   +  +                    G     L R 
Sbjct: 10  PVRVLIADDEAMVRAGVRAILARDPHVEVVAEAGD---------------GHEAIALTRA 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +                 +    F             
Sbjct: 55  HRPDVVLMDIRMPGLDGLTAAARLHRES--------ATVGLIMLTTFGQDEYVTRALEEG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +     D   +  G+  +   G  +       +                       L
Sbjct: 107 ADGFLLKADDPRELLNGVRAVGAGGAYLSARVAGRVI-----AGMRAHRAAHPHRSLARL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +  G ++ EIA  L +   TV  ++++++ K   + R  A   A   ++V
Sbjct: 162 TEREREVLAGLGAGLSNAEIASRLHLVEGTVKAHVSAVLAKLGARNRVEAAIAAYEADLV 221


>gi|315505839|ref|YP_004084726.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315412458|gb|ADU10575.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G     +          +D  +     
Sbjct: 4   RVVVADDQELIRAGLRTVLDARPDLSVVGEAADGVEAVAVATRTRPDVVLMDVRMPRRDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  +              +    F              + +       A +   
Sbjct: 64  IAATRDLVAAGNP--------ARVVMLTTFDLDEHVYAALRAGASAFLLKDTRPADLAEA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +       A+   +          LT RE E LT  +   ++
Sbjct: 116 VRVVARGEALLAPTVTRRL---LDRYADRLPAPAPAGDVLAVLTAREREVLTLTARALSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV  ++++I+ K + + R  A+  A    +V
Sbjct: 173 AEIAARLHLSTATVKTHVSAILTKLSLRDRIQAVVLAYDTGLV 215


>gi|255264294|ref|ZP_05343636.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
 gi|255106629|gb|EET49303.1| transcriptional regulatory protein DegU [Thalassiobium sp. R2A62]
          Length = 214

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 64/220 (29%), Gaps = 23/220 (10%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLL------VRWDLFQEQKLDSIVSSDWPFDL 86
             R+  +D        + ++ E       +          D  +    D I+       +
Sbjct: 5   ATRVAIVDDHPMVAQGIESILETYDDIDVVATFNNGQAIIDAVETLAPDVILLDLNMPAV 64

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     +     +           +     T        Y         I++ +  
Sbjct: 65  NGLSTTEMVLERRPSTRILILSM---HDSAEYISTALGHGALGYLLKDVPTDEIKLAIDT 121

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +   G+ +       I                       LT RE   L  +++GK++ E+
Sbjct: 122 VMSGGQYLCTGAEGAIQ--------------PGAQNASALTNREQSILLQLAQGKSNKEV 167

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A+ L IS  TV  +  +I RK    T +G   YA+ N ++
Sbjct: 168 AIDLEISVRTVETHRKNIKRKLGISTTAGLTRYAMENGVL 207


>gi|297563838|ref|YP_003682811.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848287|gb|ADH70305.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 206

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L    +    +  + E   G     LV         +D  +     
Sbjct: 3   RVLIADDHPVVRDGLRGAFTAQDDIEVVGEAANGREAVELVGRLAVDVVLMDLRIPVLSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  ++    D           L    F +  + +         Y         +  G
Sbjct: 63  VGAIAVLSRERPD--------VRVLVLTTFDSESDVLPAIEAGATGYLLKDASPDELLRG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++    +  +               V       L+ RE++ L  +++G ++
Sbjct: 115 VRAVHRGESVLAPTAVRHLM------------GQVRRPAGQSLSDRELQVLGLVADGASN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              A  L IS  ++  ++  +  K   + R+ A+A A R  ++
Sbjct: 163 RAAAARLFISEASIKTHLQHVYNKLGVRDRAAAVAEAYRRGLL 205


>gi|15614686|ref|NP_242989.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174742|dbj|BAB05842.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 223

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   +     M       G +       D         I+       
Sbjct: 6   VLIADDQTLMREGLKTIIDLEDDM----NVTGLAKNGKEVLDQIPCLLPHVILMDIQMPI 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +     L    + Y  +          F      I    G  N +     +  ++   + 
Sbjct: 62  MNGIECLKVVKRIYPHINVLM---LTTFEDDDYIIESLVGGANGFLLKDLNYDQLIYSIR 118

Query: 146 LLFPKGRIILRDRLWEIG-LLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                  +I      ++   L+ Y     +    +    +    + RE +  + +++G T
Sbjct: 119 QSVDGQMLIPNSIAVKLAKQLSKYNELTEVDLQIEKLKKEGLHFSERERQIASLLAQGLT 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L I+  TV NYI+ I  K   + R  A  Y     I
Sbjct: 179 NKKIAEKLYITEGTVKNYISEIYSKIGIRDRMQASTYLRELGI 221


>gi|189219460|ref|YP_001940101.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
 gi|161075723|gb|ABX56609.1| transcriptional regulator [Methylacidiphilum infernorum V4]
 gi|189186318|gb|ACD83503.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 227

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 17/230 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           L    ++    +       + +A +I  D  +                 F LV       
Sbjct: 5   LAETKKRGVLIIDDHAVLREGIAYIIGRDPALKVCGMAENA-----QKGFELVEKLKPDI 59

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +LV+ +        Y  +                           Y 
Sbjct: 60  VLVDISLPGKSGLELVKDIHA-----IYPEIPILVLSM---HEESLFAERMLRAGARGYL 111

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +    ++   +  +      +  +    I           KS         +L+ RE+
Sbjct: 112 MKSEGGEKLLQAIHRILEGSIFVSDEISSRI----LEGFTGKKSSPFKTSPLGKLSDREL 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           E    I +G +S +IA  L +S  TV  Y ASI +K   ++ +  + YA+
Sbjct: 168 EVFQLIGKGLSSRQIADQLHLSIKTVEAYRASIKQKLKLQSGTELVHYAI 217


>gi|153940488|ref|YP_001390741.1| LuxR family DNA-binding response regulator [Clostridium botulinum F
           str. Langeland]
 gi|152936384|gb|ABS41882.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. Langeland]
 gi|295318814|gb|ADF99191.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           F str. 230613]
          Length = 217

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +   NI++  +++     +  + +  + +  +                    G     L 
Sbjct: 1   MNNTNIIVVDDEKLIREGLKIILSTYNDIEVVGLAGD---------------GREALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIKEQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTY---EKELNDDDISLKY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 IV 246
           IV
Sbjct: 215 IV 216


>gi|119513102|ref|ZP_01632155.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462236|gb|EAW43220.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 240

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 72/257 (28%), Gaps = 33/257 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +++I+L  + +     +         L  +            +               
Sbjct: 1   MNEISIILIEDHDLTRMGLRAALQSHSALKVIGEAANATQGLKLLETA------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L R     + +      +        + HT    +   A
Sbjct: 49  ---KPDVAVVDIGLPDMDGIELTRKFRRYQAETGQTATKIL---ILTMDHTEDAVLAAFA 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------------- 170
              + Y      + ++   +         I       +                      
Sbjct: 103 AGADSYYMKETSINKLTEAIQATHGGNSWIDPAIANVVLRKMRQGIPGETQTADKHKTVK 162

Query: 171 -NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                S      + + LT RE+E L  I  G ++ +IA  L I+  TV  ++ +I+ K  
Sbjct: 163 IEALASEYEQVLETYPLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLC 222

Query: 230 TKTRSGAIAYAVRNNIV 246
              R+ A   A+R+ +V
Sbjct: 223 ADDRTQAAVRALRSGLV 239


>gi|53722189|ref|YP_111174.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|76819050|ref|YP_335286.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|126443269|ref|YP_001062630.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126458472|ref|YP_001075585.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134283397|ref|ZP_01770097.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167723630|ref|ZP_02406866.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167742598|ref|ZP_02415372.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167819761|ref|ZP_02451441.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167828147|ref|ZP_02459618.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167849611|ref|ZP_02475119.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167898207|ref|ZP_02485609.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167906569|ref|ZP_02493774.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914925|ref|ZP_02502016.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167922765|ref|ZP_02509856.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217418450|ref|ZP_03449957.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226200233|ref|ZP_03795778.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237509813|ref|ZP_04522528.1| response regulator receiver domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242313775|ref|ZP_04812792.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254190252|ref|ZP_04896761.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193436|ref|ZP_04899870.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254264632|ref|ZP_04955497.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254300511|ref|ZP_04967957.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|52212603|emb|CAH38629.1| putative response regulator protein [Burkholderia pseudomallei
           K96243]
 gi|76583523|gb|ABA52997.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
 gi|126222760|gb|ABN86265.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
 gi|126232240|gb|ABN95653.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|134245146|gb|EBA45240.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|157810287|gb|EDO87457.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157937929|gb|EDO93599.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169650189|gb|EDS82882.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|217397754|gb|EEC37769.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225927741|gb|EEH23783.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002018|gb|EEP51442.1| response regulator receiver domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|242137014|gb|EES23417.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254215634|gb|EET05019.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 215

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 21/226 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++  +                G S   L R    Q   LD  + 
Sbjct: 4   VLIADDHALVRDGLRHILGAETGFEVVGEA-----CDGISTIELTRSTDAQLLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                DL+R +   +             L   +               + Y +     A 
Sbjct: 59  GRNGIDLIRQIKEEK--------PALRILVLTMHAEQQYASRAFRAGASGYMTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +   G  +       +                       L+ RE +    I+ 
Sbjct: 111 LVGALTKIAAGGLYVSLAMAERLAQSLNEPVESL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+T  EIA  L +S  TV+ Y A I+ K      +  + YA+R+ +
Sbjct: 163 GETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKL 208


>gi|320173627|gb|EFW48819.1| Transcriptional regulatory protein UhpA [Shigella dysenteriae CDC
           74-1112]
          Length = 196

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G    LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAIKLA----------------SGHQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|325673773|ref|ZP_08153464.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325555794|gb|EGD25465.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 211

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 69/238 (28%), Gaps = 40/238 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L    D +  +   +       R+ AL               
Sbjct: 2   LTVFLVDDHEMVRRGLTQLLEADDDMRVIGQAESRSQALARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+ R +     D           L    F          A   
Sbjct: 47  HPDVVLLDVRLPDGSGIDVCRQLRADMPDLRC--------LMITAFPDERAVREAVAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +  +     I                     +     G   ELT
Sbjct: 99  KGYLVKDIRGMQLVQAVREVGAGHEIPFP-----------------VTPTRQPGAPGELT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A R+ +
Sbjct: 142 AQERRLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLEKLGVERRAQAAVLAARSGL 199


>gi|239928878|ref|ZP_04685831.1| chitinase two-component response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437205|ref|ZP_06576595.1| response-regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340100|gb|EFE67056.1| response-regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 213

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 60/228 (26%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 2   IRVLVAEDQSAVRAGLVLILRSAPDIEVVGEA-----ADGEQAVALARELRPDLVLMDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F                +     + 
Sbjct: 57  MPRLDGVSATRQVVGERLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNTEA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+       +  +A + A   +  +        LT RE E L+ +
Sbjct: 108 KDLVAAVRTVARGEGIVAPAVTRRL--IAEFAAKPARRTEADPAVLESLTRREREVLSCL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++  IA  L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 166 GEGLSNAGIADRLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELGI 213


>gi|134098945|ref|YP_001104606.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911568|emb|CAM01681.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   A+  + V          LD  +SS   
Sbjct: 21  RIVIVDDHSIVRQGLRSLLERQPDLEVVGEGATAAEAVAVVARTSPSVVLLDLKLSSGED 80

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +        +           L    F      +         Y     D   +   
Sbjct: 81  SEGLTLCERLTGEHD-----GLGVLVLTTFLDDKLVVEAVRRGARGYVVKDVDTTELVRA 135

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                               +   + ELT RE+  L  ++ G ++
Sbjct: 136 IRAVARGESAFDSRSAAA-----------MVHSMNNRSSEPELTERELGVLRLLAAGSSN 184

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I   L IS  T   ++ +IMRK    TR+ A+  A +  ++
Sbjct: 185 RQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 227


>gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
 gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a]
          Length = 240

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 80/243 (32%), Gaps = 21/243 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++       L + 
Sbjct: 4   AMTESATRDLLIQQMVSTITELDGQTAIENALEWLRRECNSERAMFFQFKGP---LLLTF 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------------FCPVFHTLPENITPP 123
           ++S+            +      V++                       +  L +     
Sbjct: 61  ITSNVDEAWGDAYRQHDLIMQDPVIRCYRNQLGFLNWQDAFRQYPVSAFYDELVDACELL 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   Y +     A     +  L    R I  ++ + +  L     ++ +         
Sbjct: 121 PAISYGYTN-HCRGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFC---S 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+  
Sbjct: 177 RGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCR 236

Query: 244 NIV 246
            ++
Sbjct: 237 GLI 239


>gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp.
           CCS1]
 gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia
           sp. CCS1]
          Length = 214

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 18/230 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           +     V   P  +D L   +     ++       L   +      L+     +   +D 
Sbjct: 3   DHTVLIVEDRPDIADNLCAAVSATDGIAVAAVAGDLDRGLQ-----LLFDLKPRVLLVDI 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D VR  A ++      V+         +F      I         Y     D
Sbjct: 58  GLPDGSGVDAVRAAAQADWTVDALVI--------SIFGDEARVIEAIRAGAKGYVLKGGD 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           ++ I   +  +   G  I       +  +     +     D        LT RE E L  
Sbjct: 110 LSHIGEDIQSVLAGGSPISPSIARHLLAVLNDPRDAPAMQDAPA-----LTNRETEILRS 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S G    EIA  LGIS  TV N+I SI RK    +   A+A A R+ ++
Sbjct: 165 VSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASRSGML 214


>gi|45443119|ref|NP_994658.1| two-component system response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|45437986|gb|AAS63535.1| response regulator [Yersinia pestis biovar Microtus str. 91001]
          Length = 257

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 42/231 (18%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V   + +   S  + L +  + +  +            +  L                
Sbjct: 65  RVVFIDDHDIVRSGFAQLLSLEEDIQVVGEFSSAKQARAGLPGL---------------Q 109

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +  +   DL++ +                 +   +  +     T       
Sbjct: 110 ANICICDISMPDENGLDLLKGLPS-----------GMGVIMLSMHDSPALVETALERGAR 158

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S       +   +  +   G  ++ +   ++  +A                   LT 
Sbjct: 159 GFLSKRCKPEDLISAVRTVGSGGVYLMPEIAQQLARVAV----------------DPLTR 202

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE E    ++EG    EIA  LG+S  TV+ + A++  K            
Sbjct: 203 REREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 253


>gi|302878856|ref|YP_003847420.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581645|gb|ADL55656.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 211

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 70/238 (29%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  + E   + +  L   +  +  +           ++ A                
Sbjct: 3   VRLIVTDDHELVRAGLLQLFEGAPGIEVVGEAVNGEELMRKLQAT--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +   +L+  +     D           L       +           
Sbjct: 48  QVDLVLLDLDMPGENGANLIERIRRHYPD--------LLILILSAHDEIKVVSRAVQAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +   G+ +      E+            +          L+
Sbjct: 100 SGYICKDCSPKTLLEAIHKVVATGKYLSPLMAEELA--------YTSAIPQANNSLALLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    + EG ++D+I+  L IS  TV+ +  +++ K   K     + Y++++ +
Sbjct: 152 SREQEIFRLLVEGLSNDDISRQLFISDRTVSAHKINLLNKLGLKNVVELVHYSIQHQL 209


>gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
 gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2]
          Length = 459

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 14/193 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------TLPEN 119
                K    +   +P   ++    +        ++        +              +
Sbjct: 267 PLPVSKPAVAIFDTYPAGWMQHYQANGFLDIDPTVRAGASSGDMIVWPVSIRDEAARLWS 326

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD------RLWEIGLLAAYQANMF 173
               AG++      ++        L L      +   +          +  LA    + F
Sbjct: 327 DARDAGLNVGVARSSWTAHGAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPF 386

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +    +  LT RE E L W  EGKT+ EI  IL IS  TVN ++ +++ K A   +
Sbjct: 387 LVPKLVPESNAVLTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNK 446

Query: 234 SGAIAYAVRNNIV 246
             A+  A+   ++
Sbjct: 447 VQAVVKAIATGLI 459


>gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 13/226 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCM 90
            R++ +D        + A  E  G      V  D      ++ L  +V SD         
Sbjct: 7   PRLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKAQEMLPDLVISDVMMPRCDGY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L ++ +    L     +F        +         + Y    FD   +   +  +  +
Sbjct: 67  GLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEELVARVRNVVRR 126

Query: 151 GRIILRDRLW----EIGLLAAYQAN---MFKSYDVHWGKDFEL---TGREVECLTWISEG 200
              +LR+       ++G +A        M    D    KD  L   T RE   L  ++EG
Sbjct: 127 QDRLLREAARFADTDVGQMARQITEIRTMLAHGDGSSSKDVALHNFTPREASVLQLVAEG 186

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + EIA  L  S   V  Y++ +  KT T +R+  + YA+ N +V
Sbjct: 187 LMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENQLV 232


>gi|90411394|ref|ZP_01219405.1| putative transcriptional regulator UhpA [Photobacterium profundum
           3TCK]
 gi|90327607|gb|EAS43950.1| putative transcriptional regulator UhpA [Photobacterium profundum
           3TCK]
          Length = 208

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 70/229 (30%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + V          A+++ ++  +         +E      +  +         +D  
Sbjct: 2   ITVALVDDHLMVRSGFAQLLNVESDIEVRGEYGRASEA-----YTALSVSDIDVAVIDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L+  +     +           +   ++ +              Y S     
Sbjct: 57  MPDESGLILLEKLRAKHPNF--------RAIILSIYDSASFVSKAIEAGACGYLSKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R +  D L+ +            +          LT RE E  T +
Sbjct: 109 VELVTAIRTVANGDRYLCADALFNL-----------SNAPTAPKALDALTKREYEVFTHL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +GK   E  +IL IS  T++ + A+I+ K         I +A+++ ++
Sbjct: 158 IQGKDVKEAGIILSISYKTIHVHRANILSKLGLSNNVDLIRFALQHKLL 206


>gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 221

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 74/244 (30%), Gaps = 29/244 (11%)

Query: 7   QVNIVLNREDEQRTSFV--SHLPTRSDLLARMI--PLDCTVSWTMRMYALTEYVGASHFL 62
             N+V +  +E  T  V   H   R  + AR++               A    +      
Sbjct: 2   PANMVPHPREELFTVLVVDDHPLLREAIAARLLQMGAGTVHEAASMAEARARAL------ 55

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      DLV  +           +        P           
Sbjct: 56  --ATGPCDLAILDLGLPDGTGIDLVTELRTQGW----PRIVVLASSDDPYA-----VRAA 104

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   +     +  G+  +   G          +                    
Sbjct: 105 FQAGAQAYLLKSASPMVVTDGVRRVLDGGVYADPSVAPVLA--------AGTRVPGTDNT 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             EL+GREVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A+R
Sbjct: 157 PRELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMR 216

Query: 243 NNIV 246
             ++
Sbjct: 217 AGVI 220


>gi|227505685|ref|ZP_03935734.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197653|gb|EEI77701.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 212

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 22/227 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     + L   +     +  + E               Q   +D I+      
Sbjct: 3   RVLLADDHEIVRLGLRSVLEGAEDIEVVGEV----ATAEAAVSAAQAGGIDVILMDLRFG 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
             +    +    +    ++              + T  + +         Y         
Sbjct: 59  AGIEGTRVMGGAEATAAIRSSMSTPPKVLVVTNYDTDADILGAIEAGAVGYLLKDAPPHE 118

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +         +       +                       LT RE+E L  ++ 
Sbjct: 119 LLAAVHSAADGDSALSPIVADRL-------------MTRVRTPRTSLTPRELEVLKLVAA 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EI   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 166 GASNREIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212


>gi|200387543|ref|ZP_03214155.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604641|gb|EDZ03186.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 196

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A+++ K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNNVELAHR 191


>gi|254519013|ref|ZP_05131069.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912762|gb|EEH97963.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 214

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +++     +  + +  D +  +   +                G     + 
Sbjct: 1   MGKIKILIVDDEKLIREGLKIMLSTFDDIEVVDTAEN---------------GYKALEVC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +        +D  +         R +                 +    F           
Sbjct: 46  KNKDIDVVLMDIRMKDCDGVMGTRLIKEQFTKI--------KVIILTTFKDKEYIQDALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         I  G+   +    ++  D   EI       +N   S +    K +
Sbjct: 98  YGAFGYLLKDSSHQVIYEGIKTAYMGNMVVHPDVANEI------LSNNNHSLNDKEIKRY 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + +E++ + +I+EG T+ EI+  L +S  T+ N I +I+ K   + R+    +A +N 
Sbjct: 152 DFSDKELQIIKYIAEGLTNKEISEKLYLSEGTIKNNITNILAKLNLRDRTQIAIFAFKNR 211

Query: 245 IV 246
           IV
Sbjct: 212 IV 213


>gi|218692578|ref|YP_002400790.1| putative response regulator [Escherichia coli ED1a]
 gi|218430142|emb|CAR11000.1| putative response regulator similar to uhpA; hexosephosphate
           transport [Escherichia coli ED1a]
          Length = 209

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +  +  +         +  D      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAW-----SALICDDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    LV+ +   +             +   ++ T     +      + Y +     
Sbjct: 57  MPDENGLSLVKRLRAQKPQF--------RAIILSIYDTPTFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVGMGGHYLCADAIRAL-----------RGGGQPAQALEILTPREREVFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 158 VKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFALNHHLL 206


>gi|26990794|ref|NP_746219.1| DNA-binding response regulator GacA [Pseudomonas putida KT2440]
 gi|148547003|ref|YP_001267105.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|325277352|ref|ZP_08142977.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|24985798|gb|AAN69683.1|AE016604_5 DNA-binding response regulator GacA [Pseudomonas putida KT2440]
 gi|148511061|gb|ABQ77921.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|324097542|gb|EGB95763.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 212

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D                G S   L R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGEGDS---------------GESALKLAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L F   R I      ++ L         K +         L+
Sbjct: 99  AGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLAL---------KPFQPQGSPFDALS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 150 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208


>gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis C231]
 gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis I19]
          Length = 208

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 8/212 (3%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D         + + E       +    D  +  +  S +  D     +R   +
Sbjct: 1   MIRIVLADDQAMVRTGFHMILEAQPDMEVVYEASDGVEALEAISRLRPDVALLDIRMPRM 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +       V  +   +    F+      T        Y         +   +   +    
Sbjct: 61  NGLQVAEQVAPQLATVMVTTFNDDAYVDTALEYGARGYLLKDAGPELLVEAIRSAYRGDV 120

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +I  + L  +           +S       D  LT RE+E    I+ G+T+ EIA  L I
Sbjct: 121 LISPEVLSLLL--------DRRSKPNTSSSDLPLTCRELEVARLIAYGRTNQEIATELFI 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           S +TV  ++A I  +   + R    A   R+ 
Sbjct: 173 SLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204


>gi|302339198|ref|YP_003804404.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301636383|gb|ADK81810.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 223

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E     +  L    +    +                    G     L    
Sbjct: 2   IKVLIADDQEIIRDSLELLVNSDERFEVVGLPQN---------------GREVVRLAAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + V+ +           ++    +    F +            
Sbjct: 47  NPDVVLMDIRMPEFNGIECVKLIKERN-----PAIKI---IMLTTFDSDEYIYESLKNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  ++  G  I      ++  +    A  +            LT
Sbjct: 99  DGFLLKGISKRDLINSIETVYNGGASIEPQTAQKVFTIFGKMAKSYFLNQDAED-IANLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+  +  I  G ++ EI   +  S  T+ NYI+ I++K   + R+    +A+++ I+
Sbjct: 158 DQEIRIIQLIGRGYSNKEIMGEVNFSEGTIRNYISMILKKIQLRDRTQIAIFAIQSGIM 216


>gi|257484573|ref|ZP_05638614.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 214

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGYQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|327193774|gb|EGE60651.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 223

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 41/245 (16%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPL---DCTVSWTMRMYALTEYVGASH 60
           E  ++ ++L          +  +    D +            +    ++           
Sbjct: 3   ERSKIKVLLIDNHPLVLDGLKAVLETFDHIEVAGTAGLAQTGLDIARQIQ---------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                    Q   +D  +      D +              L +   +   +  +     
Sbjct: 53  --------PQVVLMDINMPKLSGIDAIELFRSE--------LPQTRVVMLSMHDSREYIS 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +        Y         I   +  +   G          +              +   
Sbjct: 97  SSVMRGAAGYVLKDVSTEEIVAAIETVADGGTYFSSGVFDALM------------GERAE 144

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  I  G+++ EIA +LGIS  T   +  ++ +K    T +G I YA
Sbjct: 145 EGSDPLTPRERDTLGLIVAGRSNREIAEVLGISAATAETHRKNLKKKLGIATTAGLIRYA 204

Query: 241 VRNNI 245
           + + I
Sbjct: 205 LDHGI 209


>gi|320354726|ref|YP_004196065.1| LuxR family two component transcriptional regulator [Desulfobulbus
           propionicus DSM 2032]
 gi|320123228|gb|ADW18774.1| two component transcriptional regulator, LuxR family [Desulfobulbus
           propionicus DSM 2032]
          Length = 219

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q+  IV+  +       +  L  ++  L  +      V     +               
Sbjct: 2   QQRYRIVVADDHSLIRQGLKSLVCKNPALQIVAEASDGVELLGLLRE------------- 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             ++     +D  +      + V  +        Y  +         +           A
Sbjct: 49  --EVPDMVIVDITMPHLNGIEAVSAIRKQ-----YPAVDIL---VLTMHANKQYFYQAIA 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       A +   +  +      I      E+   A        +         
Sbjct: 99  AGAQGYLIKDDSDAELLAAIEAIRSGKTYISSQLFSEVTDEALTAFRQPGTVPYVI---- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE + L  + +G +S EI  IL +S  T++++ A++++K   K     + + VRN
Sbjct: 155 -LSEREKQVLKLVVQGCSSKEIGEILQLSPRTIDHHRANLLKKFKMKNTVDLVNHVVRN 212


>gi|269977463|ref|ZP_06184435.1| putative Nitrate/nitrite response regulator-like protein
           [Mobiluncus mulieris 28-1]
 gi|307700357|ref|ZP_07637397.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
 gi|269934379|gb|EEZ90941.1| putative Nitrate/nitrite response regulator-like protein
           [Mobiluncus mulieris 28-1]
 gi|307614568|gb|EFN93797.1| transcriptional regulator, LuxR family [Mobiluncus mulieris
           FB024-16]
          Length = 229

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 65/241 (26%), Gaps = 24/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q V +++  +     + V     +     +++    TV                    V
Sbjct: 12  QQPVTVLVIDDHGLFRAGVCSELAKYPQQVQIVGEAATVE--------------EAIAAV 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  +            A           +    L   V     + +    
Sbjct: 58  TKIKPQVALLDVHLPGGHGGGGAEVAAAPGN-------EATKFLALSVSDAAEDVVAVIR 110

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + T     +   ++ +              +        +     D       
Sbjct: 111 AGARGYVTKTISTPDLVDSIIRVAEGDAAFSPRLAGFVLDAFGAARSEIVETDNELDS-- 168

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 169 -LTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNRYELSRWAAERR 227

Query: 245 I 245
           I
Sbjct: 228 I 228


>gi|268609438|ref|ZP_06143165.1| two component LuxR family transcriptional regulator [Ruminococcus
           flavefaciens FD-1]
          Length = 209

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 60/189 (31%), Gaps = 16/189 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           A     G+    + R        +D  +      +    +                 L+ 
Sbjct: 29  AAMGASGSDAIDIYRNIRPDVMLMDIRMEGMTGLEAGEQILRD--------FPDAKILYL 80

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             F      +         Y     D   I   L  +     +     + ++  L     
Sbjct: 81  TTFSDDEYIVKALNIGAKGYILK-QDFEGIAPALEAVMGGQSVFGDKIVTKLPEL----- 134

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              K         + ++ +E E L  ++EGK++ EI+  L +S  TV NYI+S++ K + 
Sbjct: 135 --MKPKSDFNYASYGISDKEKEILELVAEGKSNKEISSELFLSEGTVRNYISSLLDKLSL 192

Query: 231 KTRSGAIAY 239
           + R+    +
Sbjct: 193 RDRTQLAVF 201


>gi|227547703|ref|ZP_03977752.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080229|gb|EEI18192.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 212

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 71/244 (29%), Gaps = 38/244 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     +  +   +D +  +  +           A                
Sbjct: 2   IRVLLADDHQIVRLGLRAVLEEADDIMVVGEVATAEGAISTARA---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITP 122
                 +D I+             ++   +    ++R  +          + T  + +  
Sbjct: 46  ----GGIDVILMDLRFGAGAEGAKVTTGAEATAEIRRTMDSPPQVLVVTNYDTDADILGA 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y       A +   +         + +     +                    
Sbjct: 102 IEAGAVGYLLKDAPPAELVAAVRSAARGDAALSQVVRTRLET-------------RESTP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            F LT RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A  
Sbjct: 149 RFSLTPRELEVLQLVAGGSSNREIGHELMLSEATVKSHLVHIYDKLGVRSRTSAVASARE 208

Query: 243 NNIV 246
             ++
Sbjct: 209 QGML 212


>gi|297198347|ref|ZP_06915744.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714401|gb|EDY58435.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 209

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 64/227 (28%), Gaps = 20/227 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
            F+  +    D       L   ++    +  + +   G     L          +D  + 
Sbjct: 1   MFMIRIILADDHPVVREGLRAMLTAEPDLEVVADASSGPHAEALAAELRPDIVLMDLRMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + +  M  +              +    + T  + +         Y       A 
Sbjct: 61  GGSGVESIARMTEAGLP--------CRVIVLTTYETDRDILRAVEAGAAGYLLKDLPRAE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +        ++       +      +    +           L+ RE   L  +++
Sbjct: 113 LARSVRAAARGETVLAPTVAARLVDQLRTRPERPR-----------LSARETAVLRLVAD 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ EI   L I  +TV  ++  +  K     R+ A+  A+R  ++
Sbjct: 162 GCTNAEIGRRLYIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRFGLL 208


>gi|325963470|ref|YP_004241376.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469557|gb|ADX73242.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 207

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 16/211 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHF-----LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           LD        +  L E  G                    + D  +      D        
Sbjct: 4   LDDHELVRQGLRDLLEGEGFVVVGESGSAAEATRRIPALQPDIAILDGRLPDGTGIEVCR 63

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           +   +   L          +              + Y         +  G+        +
Sbjct: 64  DVRSFDPRLHCL---ILTSYDDEQAIRGAVLAGASGYVLKQIRSDDLLAGIRRAAAGESL 120

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                   I            S      +   L+ +E + LT I +G T+ +I   L ++
Sbjct: 121 FEPGVKERIV--------SGLSKTPTDPRMEGLSAQEKKVLTLIGQGLTNRQIGEELFLA 172

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             TV NY++SI+ K   + R+ A  Y  R+ 
Sbjct: 173 EKTVKNYVSSILAKLGFERRTQAAVYVTRSG 203


>gi|259502947|ref|ZP_05745849.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM
           16041]
 gi|259169072|gb|EEW53567.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM
           16041]
          Length = 217

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 71/240 (29%), Gaps = 29/240 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +     S +S+L  +      +                    G   +L +    
Sbjct: 3   KVLVADDHAIVRSGISYLVNQQPGFTVVDGTAS---------------GTDTYLRIEQGG 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +    P      +        +  ++    +   +           +    
Sbjct: 48  IDILIMDLSM----PPGESGLITTKRIHDKFPKVKI---IILSMHEEQEYINRAMSNGAM 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFEL 186
            Y   +     I   L  +      +  +      L++        +            L
Sbjct: 101 SYILKSSSDGEILTALKHVVNGENYLDAN-----ILISKSDLKQINASGADVNLKGYNVL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E    ++ G ++ EI+  L IS  TV  + A+I RK    +R   + YA+ ++++
Sbjct: 156 SKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVELVRYAIHHHLI 215


>gi|209518476|ref|ZP_03267298.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501109|gb|EEA01143.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 229

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L   VS         E   G     L          +D  +     
Sbjct: 6   HVLIAEDQHLLRGGLRTMVSSLPDYTVAGEATDGIEACSLAWALKPDLILMDLSMPGMSG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +             +   +   +  +        A   + Y         +   
Sbjct: 66  IDAITVIKYR--------TPQVRIIALTIHSSDEHVQEAFAAGADGYVIKDASFEELVGE 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L+    R    ++    G+      +       H      LT RE   L  ++EG T+
Sbjct: 118 MRLVMQGKRNPAFEQRAGNGVSC----DPLPGVSRHAQLWHTLTTRERAVLRLVAEGCTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++   L +S  T+  + AS+MRK      +G +  A+   ++
Sbjct: 174 RQVGEYLQLSPKTIEKHRASLMRKLDVTNVTGLVLIALDMGVL 216


>gi|167565511|ref|ZP_02358427.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572619|ref|ZP_02365493.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 215

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       + H+   +           +               A+   L+R  
Sbjct: 2   IKVLIADDHALVRDGLRHILQNASGFEVAGEASDS---------------ATTISLIRST 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +L++ +   +             L   +       +       
Sbjct: 47  PAQVLVLDLSMPGRNGVELIKQIKDEK--------PALRILVLTMHAEQQYAVRAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     + +   +  +   G  +               A               L+
Sbjct: 99  SGYLTKESASSELVGAVTKVASGGVYVSLAMAERFAQSLNEPAETL--------PHHRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    I+ G+T  +IA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 151 DREFDVFRRIASGQTLTQIADELCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKLI 209


>gi|134297231|ref|YP_001120966.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134140388|gb|ABO56131.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 218

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       + HL     +   +   +        +   T              
Sbjct: 3   LNILLVDDHAIVRQGIRHLLIDRGIAREVTEAETGSDAMAAVDRQT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L     L   ++      +       
Sbjct: 49  -FDVILLDISLPDTNGIEVLKRIKRK--------LPNAPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|282801760|gb|ADB02863.1| AzicR5 [Kibdelosporangium sp. MJ126-NF4]
          Length = 214

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 57/228 (25%), Gaps = 17/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G +   L R         D  
Sbjct: 2   IRVLVADDQAMVRANLCVILDAQPDIEVIGSA-----ADGQAAVDLARRLRPDVVLTDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       + R +A         +      +    F                +       
Sbjct: 57  MPRRDGIAVTRALA--GVGITDPI----RVVVLTTFDLDEYVYDALHAGACGFVLKRSGP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +   F    +I       +     +        D        LT RE E    +
Sbjct: 111 VLLVEAVRAAFHGDTLISPSVTTRL---LRHLTGRDDEPDALAEP---LTAREREVAGLV 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G T+ EI   L IS  T   ++A++ RK   + R G   +A    +
Sbjct: 165 ADGLTNAEIGTRLFISAGTAKTHVANVQRKLGVRNRVGIAIWAQARGL 212


>gi|302522327|ref|ZP_07274669.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431222|gb|EFL03038.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 265

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 69/268 (25%), Gaps = 52/268 (19%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + +  ++ L   +             G     LV         +D  
Sbjct: 3   ARVVVADDQSVVREGIVMLLGLLPGIEVVGSARD-----GDEAVRLVGELAPDVVLMDLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 +    +    +           Y +     
Sbjct: 58  MPRCDGVEATRRIRAEHPGTQ--------VVVLTTYADDQDLFPALRAGARGYLTKDAGG 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFE----------- 185
           A I   +  +      +       +   +A       ++     G+  E           
Sbjct: 110 AEIVRAIEDVLSGDAGLAPGIQRRLLDRIAGETPADPQAPPSSPGRPGEEGARGRGREAT 169

Query: 186 ---------------------------LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                                      LT RE E L  I++G ++ +IA  L +S  TV 
Sbjct: 170 SGRAEVRPPGSGGAVPPGPGGAVPPDGLTAREAEVLALIAQGLSNADIARALHVSAATVK 229

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I ++  K   + R+ A+ YA  + IV
Sbjct: 230 THINNLFAKAGLRDRAQAVRYAYLHGIV 257


>gi|196232621|ref|ZP_03131473.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223383|gb|EDY17901.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 57/216 (26%), Gaps = 17/216 (7%)

Query: 36  MIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKL-----DSIVSSDWPFDLVRC 89
           ++  D      + +   L E +    F          Q+L     D IV           
Sbjct: 4   ILIADDHAMVRVGLKQTLAEELSDVDFGEASSSPETIQRLHAQTWDVIVLDIQMPGPSGL 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             L E  + +  L        P                  Y +       +   +  +  
Sbjct: 64  EVLKEVKQNFPRLPVLVLSSVP---EDQLAARVLKAGAAGYLNKQSAPEELVKAVRKVMA 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  +      ++        N              L+ RE +    +  GK+  E A  
Sbjct: 121 GGHYVSAALGEKLAADLGRSRNRAHHE--------TLSDREYQVFRLMLGGKSLKETAAE 172

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +S  TV+ Y   I  K   K       YA+ + +
Sbjct: 173 LSVSPKTVSTYRTRIFEKLRVKNDIELARYAMEHGL 208


>gi|134026355|dbj|BAF49408.1| response regulator [Streptomyces halstedii]
          Length = 217

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 59/231 (25%), Gaps = 18/231 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 3   IRVVVAEDQSAVRAGLVLILRSAPDIEVVGEAGD-----GEEAVRLARELRPDLVLMDIQ 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +   +             L    F                +     D 
Sbjct: 58  MPRLDGVSATGQVVSGQLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKDTDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
             +   +  +     +I       +  +A +                   LT RE E L 
Sbjct: 109 HDLIEAVRTVARGEGLIAPAVTRRL--IAEFAGTAPVRPARTPDPSVLDALTRREREVLG 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EG ++ EIAV L ++  TV  +++ ++ K   ++R  A   A    ++
Sbjct: 167 CLGEGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGVL 217


>gi|124268678|ref|YP_001022682.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261453|gb|ABM96447.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 226

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 69/241 (28%), Gaps = 20/241 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +  +   +  +A              + A                
Sbjct: 2   IRVVICDDHVIVRQGIKQILADAGDIALAGEAGNGPDAMTLVRAGA----------AAGT 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+++ +           L        P        +       
Sbjct: 52  PPDVVLLDIAMPQRDGLDVLKSLKAEF-----PRLPVLMLSTYP---DRQYAVRSLKLGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFE- 185
             Y + + D  ++   +  +      I      ++         +             E 
Sbjct: 104 AGYLNKSADSEQMIDAIRRVAQGKLFITPSVAEQLAGAVGAGIGSRKGGVGDDEAPLHER 163

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    ++ GK+  EIA  L +S NTV+ Y A I+ KT  +       YAVR  +
Sbjct: 164 LSHREYQVFGLLAAGKSVGEIAEQLVLSSNTVSTYRARILEKTGVRNDVELALYAVRQEL 223

Query: 246 V 246
           +
Sbjct: 224 M 224


>gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 208

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 53/218 (24%), Gaps = 15/218 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L         +  + E   G     L          +D  +     
Sbjct: 3   RVLLVDDQHLIRAGLRMLCESAPDIEVVGEADNGREAISLATRLRPDVVVMDLRMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +                 L    F                +         +  G
Sbjct: 63  ITATSRILADR--------PATRVLVLTTFGDDDHLYPALTAGACGFLLKDAPPTDLLDG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +           ++ L  +   A +                 L+ RE E L  ++EG ++
Sbjct: 115 IRRAAAGDSPFSQEVLRRLVHRAVHA------RTGSPEPVGGLSAREQEVLRLVAEGLSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            EIA  L I   TV  +I S+M KT +  R      A 
Sbjct: 169 AEIAERLHIGVTTVKTHITSLMTKTGSPNRVRLALLAH 206


>gi|239940359|ref|ZP_04692296.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291443791|ref|ZP_06583181.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291346738|gb|EFE73642.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 220

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +VL  ++    + +  +    + +  +                    GA    +VR 
Sbjct: 5   PVRVVLADDERMVRTALRVILDAEEGIEVVGEATT---------------GAEAVSVVRE 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  +           P  +    F             
Sbjct: 50  LRPDVVLMDVRMPEIDGIRATEQILSTL---EDP----PRIVVVTTFENDAYVYDALHAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         +   + L+     ++    +  +    A +        V       L
Sbjct: 103 AAGFLLKRAAAEELVQAVRLVACGDSLLYPAAVRTLAAEHAARRPARAPAWVAR-----L 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ++ G T+ EIA  L +   T   ++A+++ KT  + R+ A+  A  +  +
Sbjct: 158 TDREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGFI 217


>gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 189

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 26/211 (12%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +     +  + +   G     L+         +D  +      D+   +   + 
Sbjct: 4   GALGALLDLEDDIEVIGQAANGEEALKLIESLKPDISIMDIEMPIQSGLDVAEALKKEKS 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F              + Y         +   +  +    R + 
Sbjct: 64  --------LCKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAAAIRNVMKGKREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D ++ +                 W +   L+ RE E L    EGKT++EIA +L +S  
Sbjct: 116 QDLMFGL-----------------WQEQNPLSDREKEVLLLAKEGKTANEIAKVLYLSPG 158

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NYI+ ++ K   K R  AI  A     +
Sbjct: 159 TVRNYISEVLTKLDAKNRIEAITIAEEKGWM 189


>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 15/229 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +  +     +T   G     +V          D ++     ++
Sbjct: 23  ILVVDDDLGTRLSISDYLELSGY-SVITANDGQEALTMVEAYHPDLIVTDIVMPRMNGYE 81

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +            +    +         E I       + Y    F++  +   + 
Sbjct: 82  LVRRVRQQ------PPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIR 135

Query: 146 LLFPKGRIILRDRLWE--------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            L  + +II  +  +         +        +   ++         LT RE E L  +
Sbjct: 136 NLLERSQIIQSEYRFSQKDNLGSPLPSKIVESHHSVFTHVEKSHLLSSLTPREQEVLEML 195

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ + +V
Sbjct: 196 THGLSNIEIGHQLHLSPRTVEKYVSSLLRKTTTSNRAELVRFAITHGLV 244


>gi|157144304|ref|YP_001451623.1| DNA-binding transcriptional activator UhpA [Citrobacter koseri ATCC
           BAA-895]
 gi|157081509|gb|ABV11187.1| hypothetical protein CKO_00008 [Citrobacter koseri ATCC BAA-895]
          Length = 223

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 60/219 (27%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+  +       +     G      +     Q    D  +  
Sbjct: 32  ALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GQEALAGLPGRGVQVCICDISMPD 86

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 87  ISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 135

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 136 IAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTRRERQVAEKLAQG 179

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIA  LG+S  TV+ + A+++ K            
Sbjct: 180 MAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELARR 218


>gi|227818586|ref|YP_002822557.1| CitB, response regulator containing a CheY-like receiver domain and
           an HTH DNA-binding domain CitB [Sinorhizobium fredii
           NGR234]
 gi|36958841|gb|AAQ87266.1| two-component response regulator [Sinorhizobium fredii NGR234]
 gi|227337585|gb|ACP21804.1| putative CitB, response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain CitB [Sinorhizobium
           fredii NGR234]
          Length = 217

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 58/221 (26%), Gaps = 20/221 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + +   P   + + R +                         +          LD 
Sbjct: 4   AIRVAVIDDHPLFREGVTRSLSEIDGFEIVAE-----GGSRDDALRIAENLAPDVMLLDI 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + V  +            +        V     +      G    Y      
Sbjct: 59  SMPGS-GLEAVPLILQ-----IAPSQKIVM---LTVSEAGDDVKAALQGGAKGYVLKGIG 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      +         L A   +N   +    +    ELT RE E L  
Sbjct: 110 SRALADVIRSVASGESYVAPT------LSAKLLSNSAPTPGSKFDGIGELTTREREVLKL 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++ G ++ ++A  L +   T+ +++  IM K     R+ A 
Sbjct: 164 VASGMSNKQVARNLNLHEKTIKHHMTQIMAKLDVANRTEAA 204


>gi|126666395|ref|ZP_01737374.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
 gi|126629196|gb|EAZ99814.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
          Length = 216

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 29/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +   S +S + + +  +  +           ++                 +
Sbjct: 2   IRVLLVDDHDLVRSGISRMLSDNPDIEVIGEAKNGEDAIEQVRR---------------N 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          V+   ++   PV               
Sbjct: 47  PPDVVLMDIRMPGIGGLEATRKILRLNGAVRVVVVTGCSDNPYPV--------RVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D+  I   +       R I  +   ++ L                     L+
Sbjct: 99  AGYITKGADIREIIRAVRKAHAGQRYISPEIAQQMAL------GQGNEDHPELTLFQRLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E    +   +   +I+  L +S  TVN Y   +  K    +        VR  
Sbjct: 153 EREREIALMVVNCRKVQDISDALCLSPKTVNTYRYRVFEKLGISSDVELALMVVRLG 209


>gi|123440700|ref|YP_001004692.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087661|emb|CAL10443.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 210

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++   R   + E   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIKNMLAAYPRYQIVGEAENGLDVYNLCRQTEPDIVIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          H               Y         +  
Sbjct: 63  GLDVI-----IQLRRRWPGMKIL---ALTARHEEHYASRTLNNGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I       +           +           LT RE + L  I+EG  
Sbjct: 115 AIQTVAAGKRYIDPALNSALL---------SQLTQDCETNQTILTPRERQILKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRMIASQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|71065169|ref|YP_263896.1| nitrate/nitrite response regulator [Psychrobacter arcticus 273-4]
 gi|71038154|gb|AAZ18462.1| nitrate/nitrite response regulator, possibly NarL [Psychrobacter
           arcticus 273-4]
          Length = 219

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 21/226 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
                R   V   P     +A ++ L+  V          E +       +  +      
Sbjct: 8   SASPARLLLVDDHPMLRRGVAELLSLENDVEVIGEASNGQEALEF-----LANNEVDLVI 62

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      + ++ +             +   +   V  +  +         + Y   
Sbjct: 63  LDHKMPILTGMETLKEIKARNI--------KTKTVLFTVSDSGEDVQDALKLGVDGYLLK 114

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             +   I I +  +     +I  +       LA+  A   ++          LTGRE++ 
Sbjct: 115 DMEPDLIIIDIRKILRGELVISPN-------LASILAQTLRT-PSIEDIAGSLTGRELQV 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  I+EG ++  IA  L I+ +TV  ++  I+ KT  +TR  A  +
Sbjct: 167 IQMIAEGLSNKMIANKLDIAESTVKVHVKHILNKTGLRTRVDAAVW 212


>gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus
           radiotolerans SRS30216]
 gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 241

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 68/245 (27%), Gaps = 21/245 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     + +  L    D L+       +      +    +  GA         
Sbjct: 2   IRVLVVDDHRLVRAGLIALLHAGDGLS--TSTSSSSDDIEVVGEAAD--GAEAVQRAGEL 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +  D           +    F    +     A   
Sbjct: 58  APDVVLMDLSMPVMDGVTATAAVLAAVPD--------TAVVVLTSFIDQAQVRQALAAGA 109

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---- 183
             Y     +   +   +         +       +   +        S            
Sbjct: 110 VGYLLKDSEPREVLSAVRSAAAGHAPLDPRVARALLPGSPTSPPPPLSPGQSPQPQHPVQ 169

Query: 184 -----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+GRE E L  I+EG  + +IA  LGIS +TV  ++  I+R+     R+ A  
Sbjct: 170 PQQPATGLSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAAAV 229

Query: 239 YAVRN 243
           +A  +
Sbjct: 230 WAREH 234


>gi|329928019|ref|ZP_08282023.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
 gi|328938123|gb|EGG34520.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5]
          Length = 191

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 24/211 (11%)

Query: 37  IPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   + +   +  + +   G      +         LD  +      ++   +     
Sbjct: 4   GALASLLDFEDDIDVIGQAGDGEEALSQIAIHQPDVCLLDIEMPVRSGLEVAEEVKRRGY 63

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +    F                Y        R+   +  +    R + 
Sbjct: 64  --------ASRVIILTTFARPGYFERAVQAGVQGYLLKDEPSERLAEAIRRVMGGRREVS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            + ++  G L+   AN              LT RE E L   ++G +S++IA  L +S  
Sbjct: 116 PELVF--GTLSGAGAN-------------PLTEREREVLRLAADGNSSNDIAAKLHLSYG 160

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NY++ I+ K   K R  AI+ A     +
Sbjct: 161 TVRNYMSEILSKLNAKNRIEAISLAEEKGWI 191


>gi|254448032|ref|ZP_05061496.1| two component transcriptional regulator, LuxR family [gamma
           proteobacterium HTCC5015]
 gi|198262458|gb|EDY86739.1| two component transcriptional regulator, LuxR family [gamma
           proteobacterium HTCC5015]
          Length = 223

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     V  L      +  +   D   S                       
Sbjct: 2   IRLLLVEDQDLVRYAVKGLLEGEGSICVVGECDSGESALSYCRENA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      +    +     +           L        P          
Sbjct: 48  LPDVILMDLHMPGIGGIEASHAILQEHPN--------ARILILTGQSESPLPKHLMELGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       ++  +  +    R + +D    + L                     L+
Sbjct: 100 YGYITKKSSPREMQQAISQVSAGHRYLSQDEAQRLAL----------GGSGASNPLDALS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G T+ EI   + +S  T++ Y   +M K   K+       A +  +V
Sbjct: 150 RREMELLIKIALGCTNREIQKHMQVSPKTISTYRTRLMEKLDAKSDVELARIAQQYGVV 208


>gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 214

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 16/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D   R                 +   G + F     ++      D ++     F+
Sbjct: 5   LIVDDDRTLRAAITRYLED--RGFVVNSAASGLAGFNSFSQEVPDLIVSDIVMPDMDGFE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +  ++  +    +             L + I       + Y    F    +   + 
Sbjct: 63  LCTKIRNTDAGQLLPFIFLSARS------ELEDRIQGHTLGADDYLVKPFHPRELIAKIE 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +   I     ++I L                     LT  E +    + +G T+ +
Sbjct: 117 AQLARADRI----RFQIELALQNAHPRLGREKSPLP----LTPAEEKVFWEVIQGYTNKK 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I   L IS  TV  +++SI+ K   + RS  I YA  N  
Sbjct: 169 IGTHLFISPRTVQTHLSSILSKLELENRSQLIRYAFENGY 208


>gi|167588375|ref|ZP_02380763.1| transcriptional regulator FimZ [Burkholderia ubonensis Bu]
          Length = 169

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 17/184 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L+R    +   LD  +       L++ +             +   L          ++  
Sbjct: 3   LLREHPIELAILDIEIPGGDGLRLLKRIRAEGL--------KTRVLIFSAMDERIYSVRA 54

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N + S   D+A+I I +  +         + +  +        +  +       +
Sbjct: 55  SKAGANGFLSKRNDIAQILIAVKTILSGYLFFPAEAVSALY------HDRTRQS---ANR 105

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+  L  ++ G ++ +I   L IS  TV+ Y ++I  K    +  G   YA R
Sbjct: 106 TGGLTDRELTVLRGLARGSSNRQIGEDLCISNKTVSTYKSNIFEKLGVSSVVGLADYARR 165

Query: 243 NNIV 246
           N ++
Sbjct: 166 NGLI 169


>gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 211

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 31/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  L    D +  +          +R  ++               
Sbjct: 1   MRVLLVDDHEVVRRGLRDLLDTEDDVEIVAEAGGVDEALVRARSV--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L R +   +   Y  VL          F      +       
Sbjct: 46  EPDVAVVDMRLPDGDGLELCRRLRALDPAPYCLVL--------TAFDDEQALVGAINAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFEL 186
           + Y         +   +  +     ++                +  +        +   L
Sbjct: 98  SGYLLKQVRGQDLVNAVREVAAGRSLLDPVTTAR-------VLDRLRQSTSPVPDELDAL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE + L  I EG T+ +IA  L ++  TV NY+ +++ K   + R+ A A+  R 
Sbjct: 151 TERERKVLELIGEGLTNRQIAERLFLAEKTVKNYVTAVLAKLGMERRTQAAAWVARR 207


>gi|38637927|ref|NP_942901.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
 gi|32527265|gb|AAP86015.1| nitrate/nitrite response regulator [Ralstonia eutropha H16]
          Length = 220

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  +     S +  L  R      +                    G       +    
Sbjct: 5   ILLIDDHTLFRSGIRALLQRQADFEIVDEAAD---------------GVEDIKRAKQRRP 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      + ++ +           L     +   V     E           
Sbjct: 50  DVILLDLNMPGLSGLEALQLLVED--------LPDSAVIVLTVSEEAEELAIALRSGARG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y     +   +   +        +I      ++       A    +          LT R
Sbjct: 102 YLLKNIETEALTSAIRRAAAGEPVISESMTAKLVAQFRAPAPAAVAVPQQVDT-ARLTVR 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E +  ++ G+++ EIA  LG++ +TV  ++ +I++K    +R     YAV + +
Sbjct: 161 EREIVQELARGESNKEIARTLGVAASTVKIHVQNILKKLNLASRVQVAVYAVEHRL 216


>gi|328913398|gb|AEB64994.1| Uncharacterized transcriptional regulatory protein yxjL [Bacillus
           amyloliquefaciens LL3]
          Length = 225

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +I  D        M  +               G       + +      LD  +      
Sbjct: 15  VIIADDNSFIREGMKIILHTYEEFTVSATLENGLEAAEYCKNNPVDIALLDVRMPVMNGV 74

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +A         ++          F      +         Y     +  RIR  +
Sbjct: 75  EAAKRIAEE--TDTKPMI-------LTTFDDDEYILEAIKNGAKGYLLKNTEPERIRDAI 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F    I+    L +I       A      D     + + T RE+  ++ I++G ++ 
Sbjct: 126 KSVFNGHSILQDTVLDKIKDSLFRPAEAAHQID-----ESQFTERELSIMSLIAKGFSNR 180

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T  NYI+SI+ KT  + R+    Y
Sbjct: 181 EISKQLFISEGTTANYISSILGKTGLEHRTQIAIY 215


>gi|300788038|ref|YP_003768329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797552|gb|ADJ47927.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 216

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +         +     +  + E   G +   L R        +D  +     
Sbjct: 4   RVLVADDQVMVRTGFRLVLDAAPDIEVIAEAADGETAVRLARRLRPDVTLMDIRMPGVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A         V      +    +           G    +         +   
Sbjct: 64  LRATELLAG------PAVADPLRVVVVTTYDADENVYAALLGGACGFLLKDAGPRLLVDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +      +A               LT RE + +  +++G+T+
Sbjct: 118 VRAAANGEALVSPSVTVRLLARFTERARRRAQGAPDL-----LTDRESDVVLAVAQGRTN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S +TV  ++ ++ RK   + R+    +A +  ++
Sbjct: 173 AEIADDLRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL 215


>gi|291557697|emb|CBL34814.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium siraeum V10Sc8a]
          Length = 207

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 17/184 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L R        LD  +      +  + M                 L    F   
Sbjct: 35  GAEAVELCRKYKTDMALLDIRMPVMDGIEAAKIMLEENL---------CKPLLLTTFDEQ 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y         I   L  ++  G +  +D       + +Y  +     
Sbjct: 86  ELIHRALKVGVSGYILKNTQTDGIFSALRTVYNGGTVFQQD-------ILSYIRDAAVKC 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG- 235
                    LT RE++ +  I++G ++ EIA  L +S  TV NYI+ I+ KT  + R+  
Sbjct: 139 YGKSAVFGLLTERELDIVKLIADGCSNAEIAEKLFLSNGTVRNYISVILEKTGLEHRTQI 198

Query: 236 AIAY 239
           A+ Y
Sbjct: 199 AVRY 202


>gi|158316741|ref|YP_001509249.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158112146|gb|ABW14343.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 231

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 65/236 (27%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     +  L +    +  +            +  L               
Sbjct: 24  IRVFLLDDHEVVRRGLRDLLSEESDIVVVGEAGRADEAIADIIML--------------- 68

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D  V      +            +   +          F       T      
Sbjct: 69  -----RPDVAVLDARLQEGSGIEVCRHVRSHDPEIACL---ILTSFDDEDALFTAIMAGA 120

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++       +           +   V   +   LT
Sbjct: 121 AGYVLKQIRGTALVDAVRQVAAGQSLLDPAVTSRVLF-------RLREGPVEDERLAGLT 173

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A + 
Sbjct: 174 DQERRILALIAEGLTNRQIAARMFLAEKTVKNYVSSMLSKLGMESRTQAAVFATKL 229


>gi|186471314|ref|YP_001862632.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197623|gb|ACC75586.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 210

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++ T  +    E   G+     +R        LD  +     
Sbjct: 3   RILIADDHAIVRGGLKQIIATTNDIVVAAEAAQGSEVVDKLRTCAVDLLLLDMTMPGISG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL+R +   +             L   +                 Y +   D   +   
Sbjct: 63  VDLIRRVRAEQ--------PALPVLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L   GR I         L+ A      +           L+ RE + L  ++ GK+ 
Sbjct: 115 IRKLADGGRFIDP------KLVDAMVFETHRGDMPPHE---VLSDREFQVLQMLAAGKSI 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA I  +S  T++ +   +M+K      +  I YA+R+ ++
Sbjct: 166 NEIADICALSAKTISTHKMRLMQKLGLANNAEVIRYAIRHGLI 208


>gi|223937115|ref|ZP_03629022.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894137|gb|EEF60591.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 207

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 13/193 (6%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
                 G++   L        +K D  +       +     +         +Q       
Sbjct: 28  RCISAYGSAAEALKHLP---IEKPDVTLMDINMEGMDGIECVVRLKVELPEMQIVM---L 81

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
            V+    +     +   N Y       A++   +         +          +A    
Sbjct: 82  TVYEDTDKIFRALSAGANGYILKRAAPAKLLEAIR-------DVSAGGSAMSSSIARKVV 134

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F+        +  L+ RE   L  +++G T   IA  LGIS  T+  ++  + +K   
Sbjct: 135 ASFQKSAPVSPTEAHLSPREQNVLDCLAKGMTYKAIACDLGISIETIRTHLKRVYQKLHV 194

Query: 231 KTRSGAIAYAVRN 243
           ++R+ A+A  +R 
Sbjct: 195 QSRTEAVAKYMRR 207


>gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
 gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649]
          Length = 217

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 65/241 (26%), Gaps = 35/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +++  +     S +  L   S  +  +                    G     LV 
Sbjct: 11  SPIRVLIVDDHPVVRSGMRTLLAASPCIEIVGEAGN---------------GDEALALVG 55

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      D V                    L    F    + +     
Sbjct: 56  STSPDVVLSDLRL--GAGLDGVGVTRAVRATHPD-----VAVLIITTFDHDADIVRAVEA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         I   +        ++       +              +        
Sbjct: 109 GAAGYLLKDALPDEIIAAIRAAAVGETVLSAQLTQRV-------------VETMRVGQRP 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  + EG ++DEIA  L ISR TV  ++  +  K    +R+GA+A A R  +
Sbjct: 156 LSEREREVLVLVGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSRTGAVATARRLGL 215

Query: 246 V 246
           +
Sbjct: 216 I 216


>gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL
           J2-003]
          Length = 117

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN-------MFKSYDVHWGKDFELTGREVE 192
           +   + ++   G  I      ++     + A+                     LT RE E
Sbjct: 1   LVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMPLHILTHRECE 60

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  V
Sbjct: 61  VLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 114


>gi|168699466|ref|ZP_02731743.1| two-component response regulator [Gemmata obscuriglobus UQM 2246]
          Length = 220

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  IVL  +       +  L +    L  +            + A             
Sbjct: 1   MPRTRIVLADDHVILREGLRALISAQPDLEVVGEAASGTETVDCVRA------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   +   +              ++   +      R   L   + +      +  A
Sbjct: 48  -------TEPRVLCLDLSMPGWGSATTITRVTQLAP---RTRVLVLTMHNDPAYVRSALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T     +   +  +    R+I       +G                  +  
Sbjct: 98  AGAAGYFLKTTPSPDLLAAIRAVATGARVIDPALGDVLG------------GPPPPAERS 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  + +G T  EIA  L +S  TV  Y A +  KT  KTR+  + Y +   
Sbjct: 146 QLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKTRADYVRYGLEAG 205

Query: 245 IV 246
           ++
Sbjct: 206 LL 207


>gi|329945873|ref|ZP_08293560.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328528321|gb|EGF55299.1| putative oxygen regulatory protein NreC [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 237

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 67/242 (27%), Gaps = 25/242 (10%)

Query: 6   QQVNIVLNREDEQRTSFV-SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             + +++  +     S V S L + +  L  +   D        ++AL            
Sbjct: 20  SPLRVLVVDDHALVRSGVRSELTSHAPDLDVIAEADDVEGAIAAVHAL------------ 67

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +           +           +     L   V     + +    
Sbjct: 68  ---RPDVVLLDVHLPGGSGGGGAEVVVSCH------DVPETRFLALSVSDASDDVVGVIR 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +              +              D    +  
Sbjct: 119 AGARGYVTKAISTEDLAQAVRRVAAGDAAFSPRLAGFVLDAFGAGTGEVAVADTELDR-- 176

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E +  I+ G T  E A  L IS  TV  ++++++RK     R+    +AV   
Sbjct: 177 -LSAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVARR 235

Query: 245 IV 246
           IV
Sbjct: 236 IV 237


>gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 209

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 28/235 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++     R   V   P   + L  ++ L   +          E +        R      
Sbjct: 1   MDEMPRIRILSVEDHPVFREGLRAVLSLQPDMELATVASNAVEALE-----QYRRHAPDI 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +     F  +  +     D           +         +      G  + Y 
Sbjct: 56  TLLDLRLPGTDGFATLAEIRQLNPD--------ARVIILTTSEDDADVRRAMRGGASAYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +  +  + + +  ++                   +  + F +       D +LT RE+
Sbjct: 108 LKSLPMQELVVTIRSVYSGT---------------KHVPHEFAARMAERFGDEKLTDREL 152

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  I +G+ + +IA  L I+  TVN +I +I +K     R+ A+  A+R  ++
Sbjct: 153 DVLKLIRDGRRNKQIASDLKIAEATVNFHIKNISQKLQANDRTHAVMIALRRGLL 207


>gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23]
 gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23]
 gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei LC2W]
 gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus
           casei BD-II]
          Length = 202

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ L    D L  +            +  L               
Sbjct: 2   ITLYLAEDQSMLNSALTQLLDLEDDLHVLGSAGDGAKAWQDIQQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +  S+             +    F          A   
Sbjct: 47  KPDVAVLDIEMPKLTGLDVADKIHGSQL--------ATKIIILTTFAQKAYFERAIAAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 99  NGYLLKDSPSDDLIDVIRKVMTGQTVYAPELVTNM----------------VTAESNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A+  A +N  +
Sbjct: 143 DRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKNKWL 201


>gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
 gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea
           phototrophica DFL-43]
          Length = 239

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 15/223 (6%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +    +    ++A       +H               + V + +  + V           
Sbjct: 15  VRSCRTVEEAVFAFRAEYQVAHATYHLAQTTISALDSAYVRTTYSAEWVSRYLQRNYVDI 74

Query: 99  YNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFD--VARIRIGLML 146
             VL+   +   P   +          L E+        + Y     D    R  + +  
Sbjct: 75  DPVLKEGVQRQLPFDWSELEMSAAVLPLFEDALAHGLGPSGYSIPIIDKNFRRALLSINS 134

Query: 147 LFPKGRIILRDRLWEIGLLAAYQA---NMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                         +     A         K       +   L+ RE+ECLT  + GK  
Sbjct: 135 FETGEAWSDLVNRHKAAWAEAAFLIHDMAMKEIHGGNDQALHLSPREIECLTLAARGKDH 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA+ILG+S +TV  Y+ S   K  +     AIA A+R+ I+
Sbjct: 195 KDIALILGLSGHTVQGYLKSARHKLGSVNIPQAIAEAIRSRII 237


>gi|304394580|ref|ZP_07376499.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
 gi|303293241|gb|EFL87622.1| oxygen regulatory protein NreC [Ahrensia sp. R2A130]
          Length = 221

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 86/253 (33%), Gaps = 45/253 (17%)

Query: 1   MNFEIQQV-------NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT 53
           M+ E++         ++VL  +    ++ ++ +    D +  +      +     +  L 
Sbjct: 1   MDMEVEDAARASSKHSLVLADDHPLTSAGLAGILESRDTMEVVATAANGIEAIASIKTL- 59

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
                               LD ++      ++V      E  ++    +          
Sbjct: 60  --------------QPDCAVLDLVMPGANGLEVVA-----ESRRWSPDTRYAIVTGT--- 97

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                         +     T     + +G+  +     + + +    +           
Sbjct: 98  REASMFQALVTAGVSGLFLKTTSPVDLLLGIERVCNGETVFVPEVTAFM----------- 146

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +  ELT RE++ L  +++G+++ EIA +LG+S  TV+++ ++IMRK    + 
Sbjct: 147 ----EAEEETNELTSREMQVLQSLAKGRSNREIAEVLGVSPKTVDSHRSNIMRKFGVHSI 202

Query: 234 SGAIAYAVRNNIV 246
           +  +  A+R  ++
Sbjct: 203 ATLLVEAMRQGLI 215


>gi|145294782|ref|YP_001137603.1| hypothetical protein cgR_0730 [Corynebacterium glutamicum R]
 gi|140844702|dbj|BAF53701.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 230

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 72/254 (28%), Gaps = 42/254 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V++ L  +     S V       + +  +            + A                
Sbjct: 2   VDVFLVDDHSVFRSGVKAEL--GNAVTVVGEAGTVADAVAGIKA---------------S 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +       +++ +  S+ D           L   V     + I    G  
Sbjct: 45  KPEVVLLDVHMPDGGGLAVLQQINDSDVDTI--------FLALSVSDAAEDVIAIIRGGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y + +     +   +  +           L    L A    +      +    + +  
Sbjct: 97  RGYVTKSISGEELVEAINRVKSGDAFFSPR-LAGFVLDAFAAPDSAAGAGIVDAPEKDAA 155

Query: 186 --------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT   
Sbjct: 156 VESGKILDDPVVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQS 215

Query: 232 TRSGAIAYAVRNNI 245
            R     +A   ++
Sbjct: 216 NRHALTRWAHSRDL 229


>gi|83643206|ref|YP_431641.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631249|gb|ABC27216.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 207

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 72/238 (30%), Gaps = 34/238 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
             V+  +     S +  + +     A ++           + A T+              
Sbjct: 4   RFVITDDHGIFRSGLKLIISGLYPDAEILEAASGSEVFRLLNANTD-------------- 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L+R +        + V+    E                     
Sbjct: 50  VDLVLLDLSMPDSQGLELLRKLKQEFVMTPFAVISASEEAALIQ--------GAIQLGAL 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +   A I   + L+   G  I  + L                 +     D  LT 
Sbjct: 102 GYVPKSSSNAVIASAIQLMLSGGVYIPHELLRTGH------------DEGMPTGDICLTP 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R+ E L  ++EG ++ +I   L I+  T+  +IA+I R+     R+ A+  A    ++
Sbjct: 150 RQHEVLGLLAEGMSNKQIGTKLSIAPGTIKAHIAAIFRELNAANRTQAVHRARELKLL 207


>gi|325066413|ref|ZP_08125086.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 244

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 66/257 (25%), Gaps = 41/257 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  ++   T  ++ L      +  +                    G         D
Sbjct: 2   IRLGLADDEPLFTMGLAMLLGAQPDMEVVWRAVD---------------GNDALRCNAAD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +                 +    F T    +       
Sbjct: 47  PVDVLLLDVQMPGLDGLSATRELMARGVT--------GRVVILTTFDTDGYVMGAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------------------AAYQ 169
             +         +   +  +     +I      ++                     A+  
Sbjct: 99  AGFLLKNTPPQDLIAAIRTVHDGDSVISPGPTRQLLTAVRTGQFSGVLPGDGAGRHASQD 158

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +           +   LT RE E L  I+ G T+ EI     +S  TV  +++ ++ KT 
Sbjct: 159 SVEAVRAAEASQQVAGLTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTG 218

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R   +  A+R  ++
Sbjct: 219 CRDRVQLVLLALRGGVI 235


>gi|291485935|dbj|BAI87010.1| hypothetical protein BSNT_05150 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 200

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 26/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  L   +     M  + + + G      +         +D  +     
Sbjct: 3   RLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D+   +                 +    F              + Y     ++  +   
Sbjct: 63  LDVAEELMKKGC--------VSKVIILTTFARPGYFERAVKAGAHGYLLKDGEIDDLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +       R+   +  + +                    +  LT RE E L   + GKT+
Sbjct: 115 IRKCVKGKRVFSPELTFNM-----------------MRDENPLTVREQEILRLAALGKTT 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I + L +S+ TV NYI+ I++K   K R+ A + A     +
Sbjct: 158 KDITLELYLSQGTVRNYISEIIQKLHAKNRTEAASIAEEKGWI 200


>gi|282864949|ref|ZP_06274003.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560374|gb|EFB65922.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 224

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 71/229 (31%), Gaps = 13/229 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     L+ ++  +  V             GA    LV   +     LD  
Sbjct: 2   IRVLVADDQPLVRAGLSALLNAEEDVEVVGVA-----ADGAEALDLVTELVPDVACLDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D+   +   +      VL          F                +     D 
Sbjct: 57  MPRMDGIDVAARICGPDASPAVPVL------ILTTFDIDDYVFRALEAGVAGFLLKDSDP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +      + R     I  +A Y                 LT RE E L  +
Sbjct: 111 EEILRAIRHIAAGHGTLDRTLTRRI--VAEYVERRRLRPVTAARGIDILTAREREILLLL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++++IA  L +   TV +++A ++ K   ++R  A  +A +N +V
Sbjct: 169 AQGMSNEQIAGALVVEVATVKSHLARLLPKLGVQSRLQAAVWAYQNRVV 217


>gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 236

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 14/233 (6%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS-SDWPFDL 86
            +S L A +        +   +  +    G SH  L+     ++  L  ++  S  P   
Sbjct: 3   RQSLLSAELAVAGTRGLFAQALGRVATAFGLSHATLMHAPSPEDLLLKPLLIESSLPPAY 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC--SLTFDVARIRIGL 144
           VR    +   +      R  E   P+   L +            C  +   D        
Sbjct: 63  VRDFDRANMMRGCPFGLRLRESAVPLAWHLNDARQWSGLSRRTACPDAAPRDTGGRCHAD 122

Query: 145 MLLFPKGRIILRDRL------WEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVEC 193
            L      ++            E G  A               ++ E     L+ RE+E 
Sbjct: 123 QLQSTAAALVFLFLRRTRRTRPERGQRAGDYHPPALDAYNTVRRNEESAHNALSARELEV 182

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  ++
Sbjct: 183 VRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 235


>gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 253

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 67/246 (27%), Gaps = 29/246 (11%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW-----PF 84
           SD   R++              + + +G    +     +  +     I  +       P 
Sbjct: 6   SDFNTRLLSGRSLDEQMDNTLGMVQALGFEALVYDYSPVPLDHDGALITPTVLKLRNTPR 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPA-----------------GM 126
           D           +   V         P   +  PE  T                     M
Sbjct: 66  DWHSLWCEEGYYQIDPVQHLAINAISPFVWSYRPEADTVLQPFIGQSHAPVVSYLQDSRM 125

Query: 127 DNRYCSLTFDVARIRIGLMLLFPK--GRIILRDR--LWEIGLLAAYQANMFKSYDVHWGK 182
                            L  L     G  +   R  L +  L++               +
Sbjct: 126 TCGVTVPMHLPKGGFATLTGLRADTKGSTLQDVRQTLGDFSLISHALQEAAFPLLGKEAR 185

Query: 183 DFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE ECL   +EG T+ +IA  L  S  T+  ++ S M K   + R  A+  A
Sbjct: 186 ACPVRLTKRERECLRLAAEGLTAADIARQLNRSLATITLHLTSAMHKLGARNRVQAVVRA 245

Query: 241 VRNNIV 246
           V   ++
Sbjct: 246 VHYRLL 251


>gi|310821776|ref|YP_003954134.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309394848|gb|ADO72307.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 254

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 75/255 (29%), Gaps = 38/255 (14%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V           R++     +       +     G +    V   +     LD 
Sbjct: 11  PIRVFVVEDQTKILKNQLRLLEGHPDIEIIGTALS-----GEAALEEVSKTVPDVILLDL 65

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D+ R +  +       +          +F    + +       + Y      
Sbjct: 66  GLPRMSGIDVTREVKATHPKVEILIF--------TIFDEEDKVLEAVKAGASGYLLKGAP 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIG-----------------LLAAYQANMFKSYDVH 179
           V +I   +  +   G +I  +    +                    A        +  V 
Sbjct: 118 VDKIIEAIKEVRAGGTVIQPNLARRLLRHFRVDPDSGPVPTEPKPAAPETGPAASAGPVP 177

Query: 180 WGKDFE--------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            G+D          L+ RE E L  I++G ++ E A +L +S+ T+  ++  I RK    
Sbjct: 178 SGEDTPDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVT 237

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+   +R  ++
Sbjct: 238 NRVEAVTEGIRKGLI 252


>gi|294140638|ref|YP_003556616.1| LuxR family DNA-binding response regulator [Shewanella violacea
           DSS12]
 gi|293327107|dbj|BAJ01838.1| DNA-binding response regulator, LuxR family [Shewanella violacea
           DSS12]
          Length = 214

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRILEDERGIKVVGEAGD---------------GETAVKWSRTN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 47  EADVILMDMNMPGIGGLEATRKILRHQS--------HAKIIVLTIQTEDPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L         +           L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVAHGQRYLSPEIAQQMAL--------SQFNSNDENPFQSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+   EIAV L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITNGEKVSEIAVQLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRYKML 209


>gi|262173869|ref|ZP_06041546.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451]
 gi|261891227|gb|EEY37214.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451]
          Length = 200

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L          LD  +      D +  +   E D           +   V  + 
Sbjct: 30  GAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSA 81

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         + Y     +  ++   L       +                      + 
Sbjct: 82  ADIEALVKAGADGYLLKDTEPDQLVTLLKQAMQGEKAFSESVER-----------YLLNR 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        LT RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 131 DEESNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190

Query: 237 IAYAVRN 243
               +  
Sbjct: 191 TILYLER 197


>gi|56415671|ref|YP_152746.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616890|ref|YP_001590855.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168233331|ref|ZP_02658389.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235416|ref|ZP_02660474.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168260442|ref|ZP_02682415.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464895|ref|ZP_02698787.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818365|ref|ZP_02830365.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445001|ref|YP_002043037.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194469310|ref|ZP_03075294.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738248|ref|YP_002116733.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247639|ref|YP_002148726.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197261647|ref|ZP_03161721.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364598|ref|YP_002144235.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243718|ref|YP_002217738.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|204928562|ref|ZP_03219761.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354622|ref|YP_002228423.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859015|ref|YP_002245666.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238910166|ref|ZP_04654003.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|56129928|gb|AAV79434.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161366254|gb|ABX70022.1| hypothetical protein SPAB_04711 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403664|gb|ACF63886.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194455674|gb|EDX44513.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713750|gb|ACF92971.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632211|gb|EDX50695.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096075|emb|CAR61670.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211342|gb|ACH48739.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197239902|gb|EDY22522.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291518|gb|EDY30870.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938234|gb|ACH75567.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204321995|gb|EDZ07193.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274403|emb|CAR39430.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205332558|gb|EDZ19322.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205344468|gb|EDZ31232.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350531|gb|EDZ37162.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710818|emb|CAR35182.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320088212|emb|CBY97974.1| Response regulator gacA Global activator [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322612954|gb|EFY09906.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619019|gb|EFY15906.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625204|gb|EFY22031.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322630128|gb|EFY26901.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634320|gb|EFY31055.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635779|gb|EFY32488.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642941|gb|EFY39520.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644989|gb|EFY41520.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650087|gb|EFY46502.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656800|gb|EFY53087.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661064|gb|EFY57292.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662448|gb|EFY58661.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667326|gb|EFY63492.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674297|gb|EFY70390.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678495|gb|EFY74556.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681001|gb|EFY77035.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687063|gb|EFY83036.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193215|gb|EFZ78433.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198296|gb|EFZ83402.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200914|gb|EFZ85984.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206668|gb|EFZ91626.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213989|gb|EFZ98755.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216292|gb|EGA01020.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220514|gb|EGA04968.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225379|gb|EGA09613.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228493|gb|EGA12624.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234314|gb|EGA18402.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238626|gb|EGA22682.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244818|gb|EGA28822.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323245807|gb|EGA29797.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251010|gb|EGA34886.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257242|gb|EGA40941.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262166|gb|EGA45727.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264623|gb|EGA48127.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268912|gb|EGA52370.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625526|gb|EGE31871.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629758|gb|EGE36101.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 196

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A+++ K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAHR 191


>gi|315222100|ref|ZP_07864010.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188850|gb|EFU22555.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 227

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 76/237 (32%), Gaps = 23/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +    +  +  +        +++ +               
Sbjct: 2   IKVLIADDQALIRESLQIILSAHSDIEVVGTVGDGKEVLEKLHHI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D I+       +   +      + Y  ++    +    F       +      
Sbjct: 47  -----HPDVILMDIRMPVMDGVLCTKAVKEQYPDIKI---IILTTFDDDDFIFSALKYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  ++  G +I  +   ++  + +  A    +  V      +++
Sbjct: 99  SGYILKGVSTEELHQAIQTVYKGGAMINPNIATKVFKIFSQMAQSNFAISVAEENVEDMS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             E + +  I  G ++ EIA  L +S  TV NY++ I+ +   + R+    +AV+  
Sbjct: 159 QTEWKIIQQIGFGVSNKEIAAKLFLSEGTVRNYLSGILAELNLRDRTQLAIWAVQTG 215


>gi|312891129|ref|ZP_07750652.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296437|gb|EFQ73583.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 213

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 33/241 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E +Q+NI +  +       V+ L +  D L  +                         +
Sbjct: 1   METEQINIAIVDDHTLFRRGVAALMSEFDELHVVFEASNGEQLQQ--------------M 46

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L +  L Q   +D  +     +   + +        Y  ++         F      I  
Sbjct: 47  LAKAPLPQVILMDINMPVMDGYQATKWVRA-----RYPEIKVLALSM---FEDDKAVIEM 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +  KG  I               +            
Sbjct: 99  IKCGAGGYVLKESKPRDLLEAIKTIHQKGVYIND-----------LVSGKLLRSVTQHEP 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ++T +E+E L       T  EIA ++ +S  TV+NY  S+ +K   K+R+G + YA++
Sbjct: 148 VLDITKKEMEFLKLACSELTYKEIADLMFVSPRTVDNYRESLFQKLTIKSRTGLVLYAIQ 207

Query: 243 N 243
           N
Sbjct: 208 N 208


>gi|116696235|ref|YP_841811.1| response regulator [Ralstonia eutropha H16]
 gi|113530734|emb|CAJ97081.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 224

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 10/225 (4%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSD 81
           + +    D  A +  L   V        +     ++   L             D  +   
Sbjct: 5   TSVLIVEDDPAALSRLVQAVEMHAPATVVAGCTASAAEALAWLAQHQPDVLLCDLGLPDG 64

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++R            V+         VF      +         Y        RI 
Sbjct: 65  SGIDVIRAARERYPACDCMVV--------TVFGDDHHVLASIEAGAIGYLLKDETTDRIA 116

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L   G  +      ++            + D        L+ RE E L  IS G 
Sbjct: 117 ASIGELRAGGSPMSPLIARQVVNRLRGAPAEAVARDAAATGAVVLSVRENEILDLISRGY 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E A  LG+S +TV ++I +I  K A ++R  A+  A +  ++
Sbjct: 177 TYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGLL 221


>gi|224826787|ref|ZP_03699887.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224601007|gb|EEG07190.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 215

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 56/221 (25%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D     + L   +             G     L          LD  +     F 
Sbjct: 10  ILLVDDHALVRMGLRTLLESAGAQVLGEADNGEEALRLYEETRPDVLILDLYMPGMGGFA 69

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +                 L     H +   +         Y             + 
Sbjct: 70  TLERLRARH--------PAARVLILSAHHEVAMPVRALRIGALGYLCKRSAPQEFVKAVR 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R +      ++ L                     LT +E      +++G + +E
Sbjct: 122 QIGNNQRYLDPQLAQQVAL---------AQLGGAADPSEALTDKEFAIFLQLAQGHSVNE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +A  L +S +TV  ++  I +K   +  +     AVR  ++
Sbjct: 173 VAEELHLSPSTVGTHLYHIKQKLNVQNAAELALIAVRCGLI 213


>gi|24373425|ref|NP_717468.1| response regulator [Shewanella oneidensis MR-1]
 gi|24347703|gb|AAN54912.1|AE015629_6 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 214

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISIYLVDDHELVRTGIRRILEDERGIKVVGEAPD---------------GETAVQWARQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   V    P          
Sbjct: 47  EADVILMDMNMPVMGGLEATRKILRYQ--------PHAKIIVLTVHTEDPFPSKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L     A+              L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPADE--------NPFKALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKML 209


>gi|19551845|ref|NP_599847.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389503|ref|YP_224905.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323377|dbj|BAB98005.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324837|emb|CAF19319.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 230

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 72/254 (28%), Gaps = 42/254 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V++ L  +     S V       + +  +            + A                
Sbjct: 2   VDVFLVDDHSVFRSGVKAEL--GNAVTVVGEAGTVADAVAGIKA---------------S 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +       +++ +  S+ D           L   V     + I    G  
Sbjct: 45  KPEVVLLDVHMPDGGGLAVLQQINDSDVDTI--------FLALSVSDAAEDVIAIIRGGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y + +     +   +  +           L    L A    +      +    + +  
Sbjct: 97  RGYVTKSISGEELIEAINRVKSGDAFFSPR-LAGFVLDAFAAPDSAAGAGIVDAPEKDAA 155

Query: 186 --------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT   
Sbjct: 156 VESGKILDDPVVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQS 215

Query: 232 TRSGAIAYAVRNNI 245
            R     +A   ++
Sbjct: 216 NRHALTRWAHSRDL 229


>gi|308175073|ref|YP_003921778.1| hypothetical protein BAMF_3182 [Bacillus amyloliquefaciens DSM 7]
 gi|307607937|emb|CBI44308.1| RBAM_030520 [Bacillus amyloliquefaciens DSM 7]
 gi|328555041|gb|AEB25533.1| hypothetical protein BAMTA208_16905 [Bacillus amyloliquefaciens
           TA208]
          Length = 215

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +I  D        M  +               G       + +      LD  +      
Sbjct: 5   VIIADDNSFIREGMKIILHTYEEFTVSATLENGLEAAEYCKNNPVDIALLDVRMPVMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +A         ++          F      +         Y     +  RIR  +
Sbjct: 65  EAAKRIAEE--TDTKPMI-------LTTFDDDEYILEAIKNGAKGYLLKNTEPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F    I+    L +I       A      D     + + T RE+  ++ I++G ++ 
Sbjct: 116 KSVFNGHSILQDTVLDKIKDSLFRPAEAAHQID-----ESQFTERELSIMSLIAKGFSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T  NYI+SI+ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTTANYISSILGKTGLEHRTQIAIY 205


>gi|86750181|ref|YP_486677.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86573209|gb|ABD07766.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 217

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 63/223 (28%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E   G     L          +D  ++    
Sbjct: 7   RLLIADDHPVVRAGLRLVLGTISGLSVVAEAESGEEALYLCSKHRPDIVIMDVKMAGIGG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  +              L                   +     T  V  +   
Sbjct: 67  TSSTRAICQTYH-------PGTRVLGLTTEADTTTVSQMIDAGASGLLLKTCTVNELETA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++              Q    ++       +  L  ++ + L  + +G T+
Sbjct: 120 IRDVLAGRIVLDP----------LLQKGAPRARTAAAESEITLGSQQKKVLALLVKGFTN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LGIS  T   ++++I+ K     R+ A   AVR NIV
Sbjct: 170 SEIAERLGISLPTARYHVSAILVKLGASNRAEAAGLAVRLNIV 212


>gi|326649653|gb|AEA02287.1| two-component response regulator [Pseudomonas chlororaphis]
          Length = 213

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    L  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLLKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGMGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++   +   ++              L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQPSSE--------SPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|295835091|ref|ZP_06822024.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|197697998|gb|EDY44931.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 216

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 18/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 3   IRVIVAEDQSAVRSGLVLILRSAPDIEVVGEA-----ADGEQAVALTRRLRPDLVLMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +   +             L    F              + +     D 
Sbjct: 58  MPRLDGVSATRTVVAEQLAD---------VLVLTTFDLDEHVFGALRAGASGFLLKDIDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
             +   +  +     +I     W +  +A Y ++     D          LT RE E L+
Sbjct: 109 DGLIDAVRTVAAGNGLIAPTIGWRL--IAEYASSRASRGDRLTDSAALETLTPREREVLS 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +  G ++ EI+  L ++  TV  +++ ++ K   ++R+ A       
Sbjct: 167 CLGWGLSNAEISTRLQMAETTVKTHVSRLLSKLNLRSRAQAAVLVREL 214


>gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 158

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 2/141 (1%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L    F      +         +   +     I   ++ +   G ++  +    +  
Sbjct: 19  SRVLILTTFDLDEYVLGGLRAGAAGFLLKSASAEEIVQAIITVATGGSVLAPEVTKTV-- 76

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           +    +   ++         ELT RE+E L  +  G T+ +IA  LGI+  TV  +++ I
Sbjct: 77  IEQMLSASSRAEIRTPPGLAELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRI 136

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
             K    +R  A  + V + +
Sbjct: 137 FNKLDLVSRVQAAIFCVEHQL 157


>gi|223940236|ref|ZP_03632096.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891123|gb|EEF57624.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 222

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V + +  +D      +SH   +++    +       +    +               
Sbjct: 17  LRPVRVCVVEDDNVAREQLSHQLQQANGFTFVSCHRSAENALEEIPR------------- 63

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      D VR +           L     +   V+           
Sbjct: 64  --HKPDVVLMDINLPKMSGIDCVRHLKAL--------LPGTQFVMLTVYEDADAIFKSLL 113

Query: 125 GMDNRYCSLTFDVAR--IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                Y           +   L      G  +         L+A      F       GK
Sbjct: 114 AGAVGYLLKGRSATGDKLLEALRDAGRGGSPLNS-------LIARKIVQHFHHQPSRSGK 166

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +  L+ RE E L  +S+G    EIA +LG++  TV  +  +I  K    +R+ A+ 
Sbjct: 167 EHPLSVREREVLELLSKGLPYKEIADMLGVNIETVRKHCHNIYEKLQVSSRTEAVV 222


>gi|108802949|ref|YP_642886.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764192|gb|ABG03074.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 222

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 72/229 (31%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           QR   V    +    LA +   +       +   L E          R        +D  
Sbjct: 2   QRVLLVEDHASFRQALALLFDAEPGFEVAGQAGTLKEA---RRVASGREPRPTLGIIDLN 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L+  +     D    VL               ++              + DV
Sbjct: 59  LPDGDGSQLIGELREQNPDFAALVL--------TASVDRADHARAVEAGAAGVLHKSADV 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I      L     ++    + E+  LA       +    +  +   LT RE E L  +
Sbjct: 111 DEILDAARRLAAGEPLMSPQEVAEMIRLAGRSREEERGLRENAAR---LTPREREVLQAL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG ++ EIA  L +S +T   ++ +I+ K    +R  A+  A R  +V
Sbjct: 168 AEGLSNREIAERLHMSVDTERTHMVNILSKLGAHSRLQALVLAARAGVV 216


>gi|296101648|ref|YP_003611794.1| two-component system, NarL family, response regulator, fimbrial Z
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056107|gb|ADF60845.1| two-component system, NarL family, response regulator, fimbrial Z
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 210

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +   +    +      +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLQKNKNITVKLKSGDSHEVLDCIR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  ++    F L++ +    KD           LF               
Sbjct: 47  -NHAIDLVILDIELTGTDGFALLKRIRNLNKDI--------KVLFLSSKSESFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I  L                 D 
Sbjct: 98  AGANGFVSKRKDLGEIYNAVEMILMGYSFFPSETLNFINHLG---------SGKGMASDM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + ++I  K   ++    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDYAKAHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|227875828|ref|ZP_03993954.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|306819109|ref|ZP_07452823.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
 gi|227843576|gb|EEJ53759.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|304648085|gb|EFM45396.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
          Length = 229

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 65/241 (26%), Gaps = 24/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q V +++  +     + V     +     +++    TV                    V
Sbjct: 12  QQPVTVLVIDDHGLFRAGVCSELAKYPQQVQIVGEAATVE--------------EAIAAV 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  +            A           +    L   V     + +    
Sbjct: 58  TKIKPQVALLDVHLPGGHGGGGAEVAAAPGN-------EATKFLALSVSDAAEDVVAVIR 110

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + T     +   ++ +              +        +     D       
Sbjct: 111 AGARGYVTKTISTPDLVDSIIRVAEGDAAFSPRLAGFVLDAFGATRSEIVETDNELDS-- 168

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +  I+ G    EIA  L IS  TV +++++++RK     R     +A    
Sbjct: 169 -LTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNRYELSRWAAERR 227

Query: 245 I 245
           I
Sbjct: 228 I 228


>gi|227548133|ref|ZP_03978182.1| LuxR family response regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079795|gb|EEI17758.1| LuxR family response regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 221

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 25/236 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q+N++L  ++    S   H    +D +  +           R+                
Sbjct: 3   DQINVLLVDDNPLVLSSFRHYFKSTDDIVVVAEASNGEEALARLRE-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  + +     L+  +   E             +    F +    +     
Sbjct: 49  -HDVDVILADIHMPTMDGPTLLENINKHESRPI--------FIAVTAFDSDRTMMRIIRL 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKD 183
               Y   +     +   +      G ++    +  +   L      + +        K 
Sbjct: 100 GGAGYVLKSEKPQALIDAVRAATDGGMVVSPQAMTRLATHLKDERSTDTYVDPINEAMKL 159

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L+  E + L  +  G ++ EIA  L  S +T+  Y+++IM +    +R   +  
Sbjct: 160 QSLSKSERKVLVRLCRGMSNSEIAKDLAYSESTIKKYVSNIMDQFGATSRLNLVVK 215


>gi|182413369|ref|YP_001818435.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840583|gb|ACB74835.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 229

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 28/237 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  I++  +     + ++ L  +   L          +    +                
Sbjct: 12  ERRRILIVDDHPFMRAGLAQLIEKQPGLTVCGEAGNPAAAMTEIEK-------------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      + ++ +           L             L         
Sbjct: 58  -GRVDLVLSDITMPGRSGLEFIKDLQAIR-----PELPILVVSM---HDELIYAERVLRA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +      +       I  L +      +       K   
Sbjct: 109 GARGYIMKEAGGEALLAAIRQVLTGEVYVSPKMSARI--LDSLSGRKPRGSQSPIEK--- 163

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT RE E    I +GK++ +IA  L +S  TV+ +   I  K   K  +  + +AVR
Sbjct: 164 LTDREFEVFQLIGQGKSTRDIAKQLHLSSKTVDVHRGHIKEKLELKDTTSLVRHAVR 220


>gi|168184300|ref|ZP_02618964.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|237794731|ref|YP_002862283.1| LuxR family DNA-binding response regulator [Clostridium botulinum
           Ba4 str. 657]
 gi|182672663|gb|EDT84624.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Bf]
 gi|229261330|gb|ACQ52363.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           Ba4 str. 657]
          Length = 217

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 26/241 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + NI++  +++     +  + +  + +  +                    G     L 
Sbjct: 1   MNKTNIIIVDDEKLIREGLKIILSTYNDIEVVGLAGD---------------GRKALSLC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +    Q   +D  + +       R +                 L    F+          
Sbjct: 46  KEKDVQVVLMDIRMPNCDGVLGTRIIKEQ--------FPHIKILILTTFNDKEYIHEALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         I  G+        ++  D    I L   Y     +  D      +
Sbjct: 98  FGASGYLLKDSSNELIYEGIKACVKGNVVVHPDVANNIILNTTY---EKELNDDDISLKY 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  +  I+ G ++ EIA  + +S  T+ N I++I+ K   + R+    +A +NN
Sbjct: 155 NLTEREINIIRQIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQIAIFAFKNN 214

Query: 245 I 245
           I
Sbjct: 215 I 215


>gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +      +T   G     ++  D+      D ++     
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGY-EVITAENGREALEILEQDVPDMIICDVMMPEMDG 78

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V  +  +E+  +  VL    +          + +       + Y    F+   +   
Sbjct: 79  YTFVEQVRQNERTSWIPVLFLSAKGQSA------DRVKGLNKGADVYMVKPFEPEELVAQ 132

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                 I               +    D +LT  E++ + +++ G  +
Sbjct: 133 V----------ESSLKQTIRWKEHQAKGGENGSRIQVPFDVQLTPTELKVVQFVARGLAN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S+ TV +++++++ KT    R+    +A+ N
Sbjct: 183 REIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 29/241 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  ++      +  L    + +  M+          ++   +              
Sbjct: 2   IQIALVDDEALFRKGMKLLLEDYEGITVMLEAQDGEHLLQQLRQAS-------------T 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  + +    D  + +                 +    + +    +       
Sbjct: 49  LPDVLLLDMKMPNLNGVDTAKVLQE--------AFPTLKIIVLSTYFSKAFIVNMIELGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
             Y     +   +   +  ++  G    +  L  I        NM +         F  +
Sbjct: 101 GAYLPKNANPDEVVATIREVYSNGFSYNQAVLEVIR------DNMLQKSKPKMPLSFGVD 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE E L  I E  T+ EIA  L IS  TV+ +  +++ K + K  +G + YA++  +
Sbjct: 155 ITSREKEILQLICEEYTTSEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|260461786|ref|ZP_05810032.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|319785327|ref|YP_004144803.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|259032427|gb|EEW33692.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|317171215|gb|ADV14753.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 245

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 63/233 (27%), Gaps = 21/233 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
                  L R+        +   +           F  +        K    + S++P  
Sbjct: 6   PLVFETFLERLSQSVDEADFREALAEAAARFDLLSFAYLSLPSLPSGKPK--LISNYPPR 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCS 132
                  ++ +K   V+ R      P                    +      +      
Sbjct: 64  WAMQYLENQYEKLDPVILRARNGGRPFQWGSDLWGGKMSPAQQQLFDEAARFSIRCGLTI 123

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKS--YDVHWGKDFEL 186
              D+      +     + R +    +      + L+A       +             L
Sbjct: 124 PIVDLRGRTAAVTFAADEPRPVFLRVIERYEQALQLMATCFHRCVRRKLPGDRTVDGILL 183

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE  CL   + G ++     ILGI   T+  ++ +  +K   +T++ AIA 
Sbjct: 184 TSREYMCLRSAARGNSAWVTGRILGIKPRTIAFHLENAKKKLGVRTQNQAIAL 236


>gi|297191263|ref|ZP_06908661.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718452|gb|EDY62360.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  + ++  + +  +      L  +  L   +     +                  
Sbjct: 2   TRILIVDDQDEIRAGIRAMLRLDPGLVVVGDLSDGLQVVPFLR---------------DH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +            ++   +    F      +       
Sbjct: 47  PVDLVLMDIRMPGIDGVEATRRIRAEHPP------EKTRVIVLTTFDQDDIVLAALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           N + S T   A +  G+  +                L+     +     D    + F  L
Sbjct: 101 NGFLSKTVSPAELVAGITEVVG--GGGALSAAATAALIGHMTDSPPPLIDKELLRRFSAL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE + +  ++ G  +DEIA  + +S  TV  +    M K   + R+  +++A R  +
Sbjct: 159 TPRERDVVVLVASGLGNDEIAAQMSVSPFTVKTHAVRAMTKVGARDRAQLVSFAFRAGL 217


>gi|254390125|ref|ZP_05005345.1| two component response regulator MppU [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817119|ref|ZP_06775761.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326445989|ref|ZP_08220723.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703832|gb|EDY49644.1| two component response regulator MppU [Streptomyces clavuligerus
           ATCC 27064]
 gi|294321934|gb|EFG04069.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 209

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 62/219 (28%), Gaps = 26/219 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTE-----------YVGASHFLLVRWDLFQEQKLDSIVSS 80
           + AR++  D           + +             G +   L R         D  +  
Sbjct: 1   MTARILIADDQDDIRSGFRLVLDSQPDLTVVGEAADGLTAVALARELRPDLVVADIRMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++ R +A    D    V      L    F       T        +         +
Sbjct: 61  VDGLEVTRRLA--GPDADDPV----RVLIVTTFDQDDHVRTALRDGACGFLLKRSGPGLL 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+        +I       +   A    +          +   LT RE E    +++G
Sbjct: 115 IEGVRAALAGDVLISPQLTARLLQRATAPDDR---------RTSPLTAREEEIARLVADG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T+ EI   L IS  T   ++A++  K   + R G  A+
Sbjct: 166 LTNAEIGEALVISPGTAKTHVANVQTKLGARNRVGIAAW 204


>gi|119489383|ref|ZP_01622163.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119454656|gb|EAW35802.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 219

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       + L+ ++     +             G     L          +D  +   
Sbjct: 6   LVDDQSIIREGLSSLLQAKPDLEIVGEAEN-----GQVAVELALKLQPDIVLMDVRMPIM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R ++          L +   L    F                Y         + 
Sbjct: 61  DGVAATRSLSQQ--------LPQTKVLVLTTFDDDEYITKAMKNGAKGYLLKDTPSEELA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEG 200
             +  ++            ++  +AA   N   S       +F  LT RE+E L  I +G
Sbjct: 113 QAIRAVYKGYTQFGPGLFEKV--VAANTGNFSSSSSTQPPPEFKRLTPRELEVLKLIGKG 170

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++ EIA  L I+  TV N+++S++ + + + R+ A   A
Sbjct: 171 YSNKEIAQTLYITERTVKNHVSSLLSRLSLRDRTQAALLA 210


>gi|28870200|ref|NP_792819.1| DNA-binding response regulator GacA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|301386326|ref|ZP_07234744.1| DNA-binding response regulator GacA [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060907|ref|ZP_07252448.1| DNA-binding response regulator GacA [Pseudomonas syringae pv.
           tomato K40]
 gi|302133962|ref|ZP_07259952.1| DNA-binding response regulator GacA [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28853446|gb|AAO56514.1| DNA-binding response regulator GacA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330875458|gb|EGH09607.1| DNA-binding response regulator GacA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|331015424|gb|EGH95480.1| DNA-binding response regulator GacA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 214

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    + L  +   D       +   L               
Sbjct: 2   IKVLVVDDHDLVRTGITRMLADIEGLQVVGQADSGEESLKKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTAC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 99  AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 152 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 210


>gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 267

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L        R++     +G    +     +              +  + P D+    
Sbjct: 25  LQALQTLNRCLDRVFRDVSALGFQSLVYDYAPVPLSIEGALITPTVFMQRNAPGDMQHVW 84

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   +                       GM      
Sbjct: 85  CAHGYYQHDPVQQRATRRTTPFVWSYHTDGNCAGVEYVGGQHWQVTRYLCDSGMGTGATV 144

Query: 133 LTFDVAR----IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                          +  +  +   +   +L    LLA       +       +      
Sbjct: 145 PLHLPGGAFATFSGAIDTVDAEAPHLAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIA 204

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 205 LTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 264

Query: 246 V 246
           +
Sbjct: 265 L 265


>gi|256394854|ref|YP_003116418.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361080|gb|ACU74577.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 232

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 69/227 (30%), Gaps = 14/227 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D     +     +     +  + E   GA    L          +D  +      
Sbjct: 4   VLLVDDAPLLRMGFRMVLEAQPDVAVVGEAGDGAEAVALAAELRPDVVLMDVRMPGVDGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    ++ ++             L    F                +       A +  G+
Sbjct: 64  EATARISAAQLP--------SRVLILTTFDLDEYAFAALRAGAAGFLLKNAHPADLIAGI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFELTGREVECLTWISE 199
             +     ++      ++    A Q +          D    +   LT RE E L  I+ 
Sbjct: 116 RTVAAGDGVVAPRITRQLIEAFARQTDPAATAAGPRADERLERLERLTDREREVLVEIAR 175

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+++ EIA  L +S  TV  +++ I+ K   + R  A+ +A    +V
Sbjct: 176 GQSNAEIAETLHLSEATVKTHVSRILPKLELRDRVQAVVFAYEIGLV 222


>gi|254491848|ref|ZP_05105027.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010]
 gi|224463326|gb|EEF79596.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010]
          Length = 168

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 17/177 (9%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +++R +  +         +    L   +                
Sbjct: 7   PDMVLLDITLPGVGGLEVLRRIRANR--------EDAKVLMFSMHEDPVFASRAMQAGAR 58

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +       +   +  +      +  D   ++ +L         + D       +L+ 
Sbjct: 59  GYITKNNAADHLVEAVEKVLDGKIYLSPDMAQQLAML---------NIDAGTSALSDLSR 109

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE+E L  + EGK+ +EI+ +LGIS  TV N +  I  K      +  + +A+ + +
Sbjct: 110 RELEILRLLGEGKSMNEISDVLGISYKTVANNLTQIKSKLDISKTAELMRFAISHGL 166


>gi|209518473|ref|ZP_03267295.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501106|gb|EEA01140.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 262

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 62/223 (27%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S       + E   G     L          +D  +     
Sbjct: 6   RVLVIEDHDLLRKGLCSMLSAQGEFPVVGEAADGKQACQLAMTLNPDLILMDLSMRGMNG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +                 L   V               + Y         + + 
Sbjct: 66  IDATAAIKRRS--------PHVRVLALTVHQNEEYVREALRAGVDGYVLKDVSFDELIVA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + +  D      ++ ++                 LT RE   L  I+EG+T+
Sbjct: 118 MRAVMQGKKHLSADVYG--YMVDSFITGR--EAVAPKNAWDVLTARERSVLKLIAEGRTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++   L +S  T+  Y AS+M K A +  +  +  A+   ++
Sbjct: 174 RQVGEYLNLSPKTIEKYRASVMHKLAIENLTELVLVAISMGLL 216


>gi|227329373|ref|ZP_03833397.1| two-component system response regulator protein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 209

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 72/227 (31%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +    +  +  +         +         +D  + 
Sbjct: 4   VALVDDHIVVRSGFAQLLTLENDIQVVGQYASAAQAWPH-----LLKQPIDVAVIDIAMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +     +           +   ++ T     +        Y +       
Sbjct: 59  DESGLSLLIRLRQQRPNF--------RAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + ++   G  +  D L  I           +       +   LT RE E  + +  
Sbjct: 111 LVQAVRVVSRGGLYLCADALHAI-----------RHQQQPPKELLALTPREREIFSLLIN 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ + A+I+ K   ++    + +A+++ ++
Sbjct: 160 GISVKSIAEQLELSHKTVHVHRANILSKLQCESTVELVHFALQHQLL 206


>gi|295838815|ref|ZP_06825748.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295827204|gb|EDY42294.2| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 260

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 63/240 (26%), Gaps = 19/240 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + + L  + E     V  L      +  +           R+ A             
Sbjct: 29  APPIRVFLLDDHEVVRRGVRDLLEAEPDVVVVGEAATAREALARVPAT------------ 76

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D        E       L          F           
Sbjct: 77  ---RPDVAVLDVRLGGASGGDHEGVEVCRELRAELPGLACLM---LTSFDDDEALFDAIM 130

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKD 183
                Y     + + +   +  +     ++        +  +   +    +      G+ 
Sbjct: 131 AGAAGYVLKQINGSDLLTAVRTVATGTSLLDPRTTSRVMARIREPRPGKPEPSRAVPGEL 190

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     R  A   A R 
Sbjct: 191 ARLSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGRRIQAAMLAERL 250


>gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T  V+ +    D       L   +     +  + E    +       +      +D  + 
Sbjct: 4   TPLVTRVLLADDHTVVRNGLRLVLDGEPDLRVVAEASDGAE----AVERALAGDVDLAIL 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 L    A +E  +    L+                        + Y   T     
Sbjct: 60  DVAMPRLTGLQAAAELSRRAPDLRILMLSM---HDNEQYLFEALKAGASGYVLKTAADRD 116

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWIS 198
           +             +    +  +        +  +         +  LT RE E L  I+
Sbjct: 117 LVEAARAAMRGESFLYPAAITAL------VRDYLERASAGEDVPEDPLTPREREVLKLIA 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E  T+D+IA+ L I+R TV  + A+I+ K   + R     YA+R  +V
Sbjct: 171 EAHTNDQIALELQIARRTVERHRANILAKLHMRDRVELTRYAIRRGLV 218


>gi|256379888|ref|YP_003103548.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924191|gb|ACU39702.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 65/238 (27%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + +  +   ++ +  +  +                 G     +    
Sbjct: 2   IRVLIADDEPLMRAGIKAILGTAEDIELVDEVGD---------------GREAVRVATER 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +          V      +    F      +   +   
Sbjct: 47  RVDVAVLDIRMPRLDGLAAARELKA--------VAPSTRVVVLTTFGEDDNIVRALSEGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +      +       +  + A      +   +   +   LT
Sbjct: 99  AGFLLKDSAPEELLRAVRAVHAGEAYLSPMVTSRVVGMVAQVGQPRRQEAMRQVQ--RLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            REVE L  +  G ++ ++   L +S  TV  Y++ ++ K     R  A   A    +
Sbjct: 157 DREVEVLELLGLGMSNADVGQRLHMSEATVKTYVSRLLAKLGLTNRVQAALLARDAGL 214


>gi|205372373|ref|ZP_03225187.1| two component LuxR family transcriptional regulator [Bacillus
           coahuilensis m4-4]
          Length = 212

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 25/231 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       VS +   +     +                    G     + 
Sbjct: 1   MKSIRVLIADDHPLFRQGVSSVLANTPDNEVIAEAGS---------------GEEAVQMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +  R +            +    +   +F       +   
Sbjct: 46  CNLLPDLVLMDIQMPDLNGIEATRKILSK--------CRDIYIIIITMFEDDTSVFSAMQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +   I   +  +     +          ++  +         V      
Sbjct: 98  AGARGYVLKDAEKEDILRAVRAIAKGEVLFSSGVASR--MIDYFAQGEVTQTVVASTLFP 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           ELT RE E L  +S+G ++ E+A  LG+S  TV NY+A+I+ K     R  
Sbjct: 156 ELTSRESEVLFLLSKGASNSEVAETLGLSNKTVYNYVANILNKLQVSDRQE 206


>gi|329940271|ref|ZP_08289553.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
 gi|329301097|gb|EGG44993.1| respose regulatory protein [Streptomyces griseoaurantiacus M045]
          Length = 211

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 63/223 (28%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S    +  + E   G     L          +D  +     
Sbjct: 5   RLLLCDDHAVVRAGLRALLSSAEGIEVVGETGSGEEALALAPRLRPDVVLMDLQL----G 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +    A  E      V   P  L   +F T  +           Y         +   
Sbjct: 61  EGIDGVTATRELTSGAAVDPAPRVLVLTMFDTDADISRAVEAGATGYLLKAERPEELFAA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +          +A       +           L+ RE E L  +S G  +
Sbjct: 121 IRDAAAGRAALSP-------PVADRLLARLR------DPRPALSARESEILQQLSGGLGN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++  I  K   +TR+GA+A A    ++
Sbjct: 168 REIARALFISEATVKTHLQRIYGKLGVETRAGAVAVAKERRLL 210


>gi|330821495|ref|YP_004350357.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
 gi|327373490|gb|AEA64845.1| Response regulator, NarL-family protein [Burkholderia gladioli
           BSR3]
          Length = 236

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 19/236 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-------DSIV 78
           LP    +   ++ +D       R+  +   +G S   L+      E +           +
Sbjct: 4   LPPEPMVPGPLLIVDDEPLMQRRLATILTSLGYSDEALLFAGSLSEARAIRATQPCAIAL 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDNRYCSLTFDV 137
                 D      + E  +    L            +  P  +         Y     D 
Sbjct: 64  VDIGLPDGSGIELIREWHEADPALPIVVIST----WSTGPTIVGALQAGATGYLLKERDD 119

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------YDVHWGKDFELTGRE 190
             I + +  +   G  I       I     + A    +          +      L+ RE
Sbjct: 120 IEIALSIRSVLRGGAPIDPFVARHILETTVHAAPAAATPASPGLLPSRNGAPPVRLSRRE 179

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  +S+G T+ EI+ +L +SR TV  +I +I +K A ++R+ A+  A  + ++
Sbjct: 180 IEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRTQAVFEARAHGLL 235


>gi|332159933|ref|YP_004296510.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607515|emb|CBY29013.1| secretion system regulator of DegU/UvrY/BvgA type [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664163|gb|ADZ40807.1| putative two-component response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862444|emb|CBX72602.1| hypothetical protein YEW_HP33970 [Yersinia enterocolitica W22703]
          Length = 210

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++   R   + E   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIKNMLAAYPRYQIVGEAENGLDVYNLCRQTEPDIVIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          H               Y         +  
Sbjct: 63  GLDVI-----IQLRRRWPSMKIL---ALTARHEEHYASRTLNNGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I       +           K           LT RE + L  I+EG  
Sbjct: 115 AIQTVAAGKRYIDPALNSALL---------SKLTQDCETNQTILTPRERQILKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRIIASQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|302519720|ref|ZP_07272062.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. SPB78]
 gi|302428615|gb|EFL00431.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. SPB78]
          Length = 140

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +       A +   + ++     ++       +  +A +             +   
Sbjct: 18  GASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRL--IADFARQRPAPGKPAL-RLKA 74

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT ++ G+++ EIA  L ++  TV  +++ ++ K   + R+ A+ +A  + +
Sbjct: 75  LTERETEVLTLVARGRSNTEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGL 134

Query: 246 V 246
           V
Sbjct: 135 V 135


>gi|190573768|ref|YP_001971613.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011690|emb|CAQ45309.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 215

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + +    +  +   +        +  L               
Sbjct: 3   IRVYLVDDHALVRTGMKMILSGETDIEVVGEAETGEDALREVRQLL-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +  S ++    ++    +   P                
Sbjct: 49  -PDVVLCDLHLPGVSGMEVTERIVRSHRNTRVVIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +  +    R +       + L          + + +      L+
Sbjct: 100 AGYIGKGCDAQELLRAVRDVAAGRRYLGTSIAQNLAL---------STVEGNGSPFDNLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G   ++IA  L +S  TVN + A +  K            A +  +V
Sbjct: 151 PRELEVALLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209


>gi|22124427|ref|NP_667850.1| response regulator/transcription activator [Yersinia pestis KIM 10]
 gi|45440263|ref|NP_991802.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108810019|ref|YP_653935.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108813574|ref|YP_649341.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145600963|ref|YP_001165039.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|150260698|ref|ZP_01917426.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|162420249|ref|YP_001608242.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           Angola]
 gi|165926713|ref|ZP_02222545.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936411|ref|ZP_02224979.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010556|ref|ZP_02231454.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213920|ref|ZP_02239955.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402479|ref|ZP_02307934.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167418702|ref|ZP_02310455.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426185|ref|ZP_02317938.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469425|ref|ZP_02334129.1| putative DNA-binding response regulator EsrB [Yersinia pestis FV-1]
 gi|218927460|ref|YP_002345335.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229836506|ref|ZP_04456672.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229840115|ref|ZP_04460274.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842196|ref|ZP_04462351.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904063|ref|ZP_04519176.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270488948|ref|ZP_06206022.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502330|ref|YP_003566392.1| putative two-component response regulator [Yersinia pestis Z176003]
 gi|21957213|gb|AAM84101.1|AE013653_1 response regulator/transcription activator [Yersinia pestis KIM 10]
 gi|45435119|gb|AAS60679.1| putative two-component response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777222|gb|ABG19741.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108781932|gb|ABG15990.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|115346071|emb|CAL18939.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|145212659|gb|ABP42066.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|149290106|gb|EDM40183.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|162353064|gb|ABX87012.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           Angola]
 gi|165915527|gb|EDR34136.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921336|gb|EDR38560.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990646|gb|EDR42947.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204895|gb|EDR49375.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962696|gb|EDR58717.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048129|gb|EDR59537.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054896|gb|EDR64698.1| putative DNA-binding response regulator EsrB [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679833|gb|EEO75936.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229690506|gb|EEO82560.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696481|gb|EEO86528.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706190|gb|EEO92198.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262360410|gb|ACY57131.1| putative two-component response regulator [Yersinia pestis D106004]
 gi|262364360|gb|ACY60917.1| putative two-component response regulator [Yersinia pestis D182038]
 gi|270337452|gb|EFA48229.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294352789|gb|ADE63130.1| putative two-component response regulator [Yersinia pestis Z176003]
 gi|320013881|gb|ADV97452.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 210

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++   R   + +   G   + L R        LD  +    
Sbjct: 3   TKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  L+          +               Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPALKIL---TLTARNEEHYASRTFNSGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I           A   + + K           LT RE + L  I+EG  
Sbjct: 115 AIQTVAIGKRYIDP---------ALDASMVIKLTQGSDNTPPVLTPRERQILKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|302337582|ref|YP_003802788.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634767|gb|ADK80194.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 225

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 12/215 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMR-MYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
             +  +    D L  +  L   + +    +  +     G     +VR        +D  +
Sbjct: 1   MAMIRVVLVDDQLLFVESLKTVLDFRADDIEVVGTAHNGEEGLQVVRDTHPDIVLMDVRM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R ++    D           +    F                Y        
Sbjct: 61  PGMDGVEAARRLSAEFSDI--------KVVMLTTFDDDTYVREAMKYNAVGYLLKNIPPE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     ++  D + +I     +              DF  + RE E L +IS
Sbjct: 113 DLIGSIRAVGSGNILLSPDVVGKILGREEHAPEPSPDAGDFTVGDF--SRREREVLYFIS 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            G  +  IA  L I+  TV N+I+ I  K  T+ R
Sbjct: 171 RGMDNTAIADRLFIAEQTVKNHISKIYAKLETRDR 205


>gi|224583552|ref|YP_002637350.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468079|gb|ACN45909.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 206

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 16/210 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             +   +     +  + E   G       R +      +D  +      +  R +A S  
Sbjct: 3   AGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKIARSTA 62

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
           D           +   V    P            Y S       +   +  ++   R I 
Sbjct: 63  DI--------KVIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIA 114

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            D   ++ L                     L+ RE++ +  I++G+  +EI+  L +S  
Sbjct: 115 SDIAQQMALSQI-------EPAKTETPFASLSERELQIMLMITKGQKVNEISEQLNLSPK 167

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TVN+Y   +  K            A+R+ +
Sbjct: 168 TVNSYRYRMFSKLNIHGDVELTHLAIRHGL 197


>gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1]
 gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1]
          Length = 213

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 15/174 (8%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +       ++  +   +  +          L   +                 Y  
Sbjct: 53  ILDISMPEMDGLVVLDTLKEEKLSQN--------VLMLTMHDQAKYIKKAIEKGAKGYVL 104

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +     +   +  ++             +        N  +          +LT RE++
Sbjct: 105 KSTSKTMLVEAIQKVYNGENFYDPRLTEIL-------LNTSEESKNKQATHVKLTPREID 157

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I++ K + EIA +L IS NTV ++  ++  K    + S  + YA+++  +
Sbjct: 158 ILKLIAQNKKTKEIAELLFISVNTVQSHKKNLYSKLNIHSVSELVTYAIQHKFI 211


>gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580]
 gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580]
 gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580]
          Length = 200

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 62/223 (27%), Gaps = 26/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  L   +     M  + +   G      +         +D  +     
Sbjct: 3   RLFIAEDQRMLLSALGSLLDLEEDMEVIGQATNGEEALTAILKLEPDVCLMDIEMPVKSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   +A            +   +    F              + Y     ++  +   
Sbjct: 63  LEVAEELAKQG--------AKTKIIILTTFARPGYFERAVKSNVHGYLLKDGEIDDLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +       R    +             N  +  +        LT RE + L     GKT+
Sbjct: 115 IRKCTEGKRTFSPELT----------FNAVRETNP-------LTEREQDILRLAYIGKTT 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI+  L +S  TV NYI+ IM+K   K R  A   A     +
Sbjct: 158 KEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 200


>gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 199

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 42/238 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +     +  L +  + +  +                          LV   
Sbjct: 2   IRIVIAEDQQLLLGALGTLLSMEEDMEVVGQAKNGEEVLN---------------LVEQK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D    +   +             +    F              
Sbjct: 47  KPDVCIMDIEMPVKTGLDAAEELRDDD----------CKVIVLTTFARTGYFERARKANV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +    ++   +                   D+ + +   LT
Sbjct: 97  NGYLLKDSPSEDLANSIRAIMAGRKVYAPEL-----------------IDMAYEEGNPLT 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I++GKT+ EIA  L ++  TV NY+++IM K     R  AI+       
Sbjct: 140 TREEQVLKLIADGKTTKEIAGQLYLTNGTVRNYVSTIMDKLNVSNRIEAISRIKEKGW 197


>gi|118443997|ref|YP_877397.1| response regulator [Clostridium novyi NT]
 gi|118134453|gb|ABK61497.1| Response regulator (CheY-like recever domain and HTH) [Clostridium
           novyi NT]
          Length = 209

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +V+  +D      +  +    D +  +                    G       
Sbjct: 1   MRYLKVVIADDDGLIRDSLKLILELEDDIEVVATAKN---------------GQEVIDCS 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +         + +   +KD           +    F           
Sbjct: 46  RRYSPDVVLMDIRMPILDGVLATKKIKEQQKDI--------KIIILTTFKDDEYIAEAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +   I   L  ++    +  RD L  +                      
Sbjct: 98  NGAEGYILKNQNSDSIIECLRTVYNGNGVFQRDILNSL--------MCMIKNKKKSSNKI 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE+E L  I +G ++ EI+  + +S  T+ NYI ++++K   + R+    Y ++N
Sbjct: 150 NLTERELEILALIGQGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIYYLKN 208


>gi|83716364|ref|YP_439443.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167577886|ref|ZP_02370760.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167616010|ref|ZP_02384645.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257142565|ref|ZP_05590827.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83650189|gb|ABC34253.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 215

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 63/226 (27%), Gaps = 21/226 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++                   G S   L+R    Q   LD  + 
Sbjct: 4   VLIADDHALVRDGLRHILGSATGFEVVGEA-----CDGPSTIDLMRSTDAQLLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                DL++ +   +             L   +               + Y +     A 
Sbjct: 59  GRNGLDLIKQIKEEK--------PALRILVLTMHAEQQYASRAFRAGASGYMTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +   G  +       +                       L+ RE +    I+ 
Sbjct: 111 LVGALTKIAAGGVYVSLAMAERLAQSLNEPVESL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G+T  EIA  L +S  TV+ Y A I+ K      +  + YA+R+ +
Sbjct: 163 GETITEIAQALDVSAKTVSTYKARILEKMQMPHDAALVRYAIRHKL 208


>gi|255535518|ref|YP_003095889.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
 gi|255341714|gb|ACU07827.1| two-component response regulator [Flavobacteriaceae bacterium
           3519-10]
          Length = 218

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + + T D       L  +      +  D    +     +  N+ +  +    +  E
Sbjct: 100 GVKSFLTKTADSKEFVFALKEVLAGKVYLTEDTKTALY---NFICNVEQIEEHDPSRLEE 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I EG  + EIA  L IS +TV ++  +IM+K   ++ S  + +A+ NN+
Sbjct: 157 LTVREKEVLHHICEGLRTREIADELFISPHTVESHRRNIMQKLDVRSSSMLVKFAMNNNL 216

Query: 246 V 246
           V
Sbjct: 217 V 217


>gi|168185605|ref|ZP_02620240.1| response regulator [Clostridium botulinum C str. Eklund]
 gi|169296459|gb|EDS78592.1| response regulator [Clostridium botulinum C str. Eklund]
          Length = 206

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 66/236 (27%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +D      +  +    D +  +                               
Sbjct: 1   MKVVIADDDGLIRDSLKLILELEDDIEVVATAKNGKEVID---------------CCIRY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +   +KD           +    F              
Sbjct: 46  SPDVVLMDIRMPILDGVLATKEIKDHQKDI--------KIIILTTFKDDEYIAEAIKNGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   I   L  ++    +  RD L  +                       LT
Sbjct: 98  EGYILKNQNSDSIIECLRTVYNGNGVFQRDILNSL--------MCMIKNKKKSSNKINLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  I EG ++ EI+  + +S  T+ NYI ++++K   + R+    Y ++N
Sbjct: 150 EREFEILALIGEGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQLAIYYLKN 205


>gi|311277366|ref|YP_003939597.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308746561|gb|ADO46313.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 197

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 36/221 (16%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSIV 78
           + +          A+++ L+                G+ H  L        Q    D  +
Sbjct: 5   ALIDDHLIVRSGFAQLLSLEPDFQVVGE-------FGSGHEALAGLPGRGVQVCICDISM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L+  +            +    +   V  +              + S      
Sbjct: 58  PDLSGLELLNQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPD 106

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G  +  D   ++                  G+   LT RE +    ++
Sbjct: 107 ELIAAVRAVATGGCYLTPDIASKLA----------------AGRQDPLTRRERQVAEKLA 150

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +G    EIA +LG+S  TV+ + A++M K            
Sbjct: 151 QGMAVKEIAAVLGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4]
          Length = 199

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +      +S    M  + +   G     LV+        +D  +     
Sbjct: 3   RIVIAEDQQLLLGAFGSLLSLEDDMEVVGKASNGEEAIKLVQELKPDVCMMDIEMPGKTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +                 +    F                Y         +   
Sbjct: 63  LDAAEELKGLG----------CKVIILTTFARTGYFQRAVKAGVMGYLLKDSPSEELASS 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    RI   + + ++                   +   LT RE+E L  +++GK +
Sbjct: 113 IRRIMQGKRIYAPELIEDVYT-----------------EQNPLTEREIEVLGLVADGKNT 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EIA  L I   TV NYI++I+ K   K R  AI  +     
Sbjct: 156 NEIANELSIKAGTVRNYISAILDKLEVKNRIEAITQSKEKGW 197


>gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 225

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +      +T   G     ++  D+      D ++     
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGY-EVITAENGREALEILEHDVPDMIICDVMMPEMDG 78

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V  +  +E+  +  VL    +          + +       + Y    F+   +   
Sbjct: 79  YTFVEQVRQNERTSWIPVLFLSAKGQSA------DRVKGLNKGADVYMVKPFEPEELVAQ 132

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                 I               +    D +LT  E++ + +++ G  +
Sbjct: 133 V----------ESSLKQTIRWKEHQAKGGENGSRIQVPFDVQLTPTELKVVQFVARGLAN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S+ TV +++++++ KT    R+    +A+ N
Sbjct: 183 REIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 212

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L   S  +  +           R+ AL               
Sbjct: 2   IRVFLLDDHEVVRRGLADLLHASGDIEVVGESGSAQEAARRIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D+ R +         + ++         +              
Sbjct: 47  RPDVAILDARLPDGNGIDVCRDIRA-----VDSSIKGL---ILTSYEDDEALFAAIMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++          +     +  +S      +   LT
Sbjct: 99  SGYVLKQIRGTDLVDAVRRVAAGQSLLDPA-------ITTRVLDRIRSGVEQPRELQSLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R 
Sbjct: 152 EQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207


>gi|325283395|ref|YP_004255936.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324315204|gb|ADY26319.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 235

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 60/230 (26%), Gaps = 20/230 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
           E  ++    +    D       L   +     +  + E   GA               +D
Sbjct: 12  EAASAVPVRVLLVDDHAVVRQGLRLFLGLDPSLDIVGEASNGAEAVEAAIRLQPDVILMD 71

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++           +            +    +         +     A     Y     
Sbjct: 72  LLMPVMDGIAATAEIRRC-----CPGTE---VIALTSTLEESKVNGAVAAGATSYLLKDA 123

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +         +                               LT +EVE L 
Sbjct: 124 SSDLLNEAIHAAARGEVRLHPQAAR-----------RLVRDFRAPDMREHLTCKEVEVLQ 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+ G  +  IA  L IS  TV ++++ ++ K   ++R+ A  YA++  +
Sbjct: 173 LIARGLNNKGIAAQLDISETTVKSHVSRLLGKLELESRTQAALYALKTGL 222


>gi|260221745|emb|CBA30616.1| hypothetical protein Csp_C24440 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 235

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 28/235 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +   +  L  +            + AL    G S  LL     
Sbjct: 23  RILIGDDHRIVREGLKQVLADAADLHVVAEAASGPEVLEAVQALGGNAGLSAVLL----- 77

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      D+++ +  +     +  L        P        +        
Sbjct: 78  ------DIAMPGRDGLDVLQVLKAT-----WPKLPVLMLSTYP---EKQYAVRCIKLGAA 123

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +   D   +   +  +   G  +       +    A  A+              L+ 
Sbjct: 124 GYLNKGADPDDMIAAVRKVASGGVYVSAQAAEALASAVANAAHQGAEA---------LSH 174

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE +    ++ GKT  EI   LG++ NTV+ Y   I+ KT TK       YA + 
Sbjct: 175 REHQVFRLLTAGKTVGEIGAQLGLASNTVSTYRQRILEKTGTKNDVELALYAQQQ 229


>gi|256421934|ref|YP_003122587.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036842|gb|ACU60386.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 222

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 71/240 (29%), Gaps = 29/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E     ++ + +R   +  +   +        + ++               
Sbjct: 5   IRLVIADDHEIFRDGLALMLSRQPDITLVGQANNGRELLELLTSV--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         R +     D           +   +F      +       
Sbjct: 50  EADVVMTDLKMPLMDGITATRALLQRNPDI--------KIIALSMFDEEELIVEMLEAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGR-IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
             Y     D   I   +  ++        +       ++   + N  +            
Sbjct: 102 KGYLLKNADKQEIIEAINSVYEDHIFYCRQTSARLAAMIVKSRFNPPRE-----NNAVTF 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E +  I +  T+ EI   + +S+ TV  +   I+ K   K  +G + +A++NN++
Sbjct: 157 TDREKEIIRLICQQFTAQEIGDKIFLSKRTVEGHRTRILEKMNVKNTAGVVVFALKNNLI 216


>gi|153947769|ref|YP_001402787.1| DNA-binding response regulator EsrB [Yersinia pseudotuberculosis IP
           31758]
 gi|170026132|ref|YP_001722637.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|152959264|gb|ABS46725.1| putative DNA-binding response regulator EsrB [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752666|gb|ACA70184.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
          Length = 210

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++   R   + +   G   + L R        LD  +    
Sbjct: 3   TKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPDMVILDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          +               Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPAMKIL---TLTARNEEHYASRTFNSGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I           A   + + K           LT RE + L  I+EG  
Sbjct: 115 AIQTVAIGKRYIDP---------ALDASMVIKLTQGSDNTPPVLTPRERQILKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|326802187|ref|YP_004320006.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326552951|gb|ADZ81336.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 216

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 10/188 (5%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
                VR        +D  +      D VR +           L     L   VF    +
Sbjct: 39  DCVRRVRDCGADVVLMDIEMPGKNGIDAVRQLKTE--------LPHLMILIQTVFEDEDK 90

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                    + Y   +     +   +  L   G  +      ++        +  K    
Sbjct: 91  IFESIRAGASGYLLKSAINHSLIKSIEELLNGGAPMTPLVARKLLYSIHTNVDQNKPMST 150

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                + LT +E E L+ I  G +   +   L I+ +TV +++  I  K    + + A+A
Sbjct: 151 SIN--YGLTNKEREVLSCIVRGMSYKMVGHELNITYDTVRSHVKKIYEKLHVASLTEAVA 208

Query: 239 YAVRNNIV 246
            AV   IV
Sbjct: 209 KAVSQRIV 216


>gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 215

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 17/218 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D    ++ +   + +      +T   G     ++  D+      D ++     + 
Sbjct: 12  LLLIDDDPNLILLVKDYLEFRGY-EVMTAEHGKEALDILEQDIPDMIICDVMMPEMDGYT 70

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV  +    +     VL    +          + I       + Y    F+   +   + 
Sbjct: 71  LVEKVRDDSRTSCIPVLFLSAKGQS------QDRIKGLNKGADIYMVKPFEPEELVAQVE 124

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                             ++    +N   +  ++   D +LT  E + + +++ G  + E
Sbjct: 125 SC----------LKQTARMMQLTVSNPDSAPRINVPYDVDLTPTERKVVQFVARGMANRE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  L +S+ T+ +++++++ KT    R+    +A+ N
Sbjct: 175 IAQQLNVSQRTIESHVSNMLGKTGLHNRTELARWAIEN 212


>gi|284040679|ref|YP_003390609.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819972|gb|ADB41810.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 219

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + L  +       +S +  + +    ++          ++               
Sbjct: 1   MRKIKLALCDDHTLFRVGMSTILGQINDFELVLEAGNGQELIDKIAR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     LD  +           +  +     Y +++        +       +    
Sbjct: 48  --KLPDVVLLDLQMPVMDGTATADYLREN-----YPLIKIV---VLTMHDEDRMVLHLLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   +  +  +G  +       +      +  + K  +  +    
Sbjct: 98  KGVSGYLLKDAEAGEVEKAVRKVMDEGVYLNEFVSKAMLRKMTNKTTITKPVNAFYNSKI 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I EG ++ EI+  + +S  TV  +   I+ KT TK  +G +AYA +N+
Sbjct: 158 LLSEREKEVLMLICEGLSTLEISEKIFLSPRTVEGHRLRILEKTGTKNTAGMVAYAFKNS 217

Query: 245 IV 246
           +V
Sbjct: 218 LV 219


>gi|149176998|ref|ZP_01855607.1| two component transcriptional regulator, LuxR family protein
           [Planctomyces maris DSM 8797]
 gi|148844253|gb|EDL58607.1| two component transcriptional regulator, LuxR family protein
           [Planctomyces maris DSM 8797]
          Length = 221

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 21/237 (8%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L   D  R  FV       D +      D  +          E +      L+      
Sbjct: 1   MLTSTDLIRVVFVDDHMVLVDSIVSRFQRDPDIEVVGTATNADEGL-----ALILETEPD 55

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +     FD+   ++          L+    +F   + +              Y
Sbjct: 56  VVILDVELPGRGSFDIAEEISSR--------LKNTKMIFLTGYLSDIFIELALRVNAKGY 107

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTG 188
                 +  +   +           +     +        +  K       K     LT 
Sbjct: 108 LLKGEPIESLIHAIKKASRGEYCFSQSVQERL------VFDHKKERYSIQSKSMLTSLTS 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           R++E L  ++ GK+  E+A  + +S  +++++   IM K     R     Y++R  +
Sbjct: 162 RQIEVLRHLARGKSVKEVARSMHLSEKSIDSHKYRIMHKLGIHDRVELARYSIREGL 218


>gi|311744719|ref|ZP_07718516.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium
           marinum DSM 15272]
 gi|311312028|gb|EFQ81948.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium
           marinum DSM 15272]
          Length = 222

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 67/240 (27%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ I +  +     + V     R+++   +  +         + ALT             
Sbjct: 12  RLRIAVVDDHAMFRTGV-----RAEISGTLDLVAEAEDVESAVAALT------------A 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +++R M                 L   V     + I      
Sbjct: 55  TTPDVVLLDVHMPGGGGGEVLRRML--------PRHPDMRFLALSVSDAAEDVIGVIRAG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +       +   +  +     +        +                       L
Sbjct: 107 ARGYVTKNISGPELLDAIARVAAGDAVFSP----RLAGFVLDAFAGTIEVAQIDTDLDRL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E +  I+ G    E+A  L IS  TV  +++S++RK    +R     +A    ++
Sbjct: 163 TEREREVMRLIARGYAYKEVAKELFISIKTVETHVSSVLRKLQLSSRHELTRWANDRRLI 222


>gi|170694246|ref|ZP_02885401.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170140986|gb|EDT09159.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 216

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +       + H+   +     +     +               AS   L+R  
Sbjct: 2   TRVLLADDHALVRDGLRHILRGASGFDVLGEASDS---------------ASTVALIRAC 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +             L   +       +       
Sbjct: 47  AADVLVLDLSMPGRNGVELIKQIKDEK--------PSLRILVLTMHAEQQYAVRAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   +  +   G  +               A++             L+
Sbjct: 99  SGYLTKESASAELVAAVTKVAAGGVYVSLAMAERFAQSLNEPADLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ G+T  EIA  L +S  T++ Y   I+ K      +  + YAVR+ +V
Sbjct: 151 DREFDVLKRIAAGQTITEIAAELCVSAKTISTYKTRILEKMQMPHEAALVRYAVRHKLV 209


>gi|332666500|ref|YP_004449288.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335314|gb|AEE52415.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 209

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  ++      ++ L    +    +      +    ++ +L               
Sbjct: 3   IKIILYEDNTALRESLAELLAEQNDFELLGAFGDCLQVVSQLQSL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +                +     +   VF    +     +   
Sbjct: 48  RPDVILMDIGLPGISGIEAAAIARRL--------IPAVEIIILTVFEDDDKVFDALSAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y        ++   +  +   G  +          +A      F        +   L+
Sbjct: 100 SGYLLKKTTPEKLIDAIRDIQLGGVAMSPG-------IARKVLGYFAQKQQRALELERLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E L  ++ G +   IA  LGIS  TV  +I  I  K    + + AIA 
Sbjct: 153 PREKEILQHLANGDSQKMIAYDLGISLETVKTHIKRIYEKLQVHSLAEAIAK 204


>gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1]
 gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1]
          Length = 230

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 18/217 (8%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               + A  E      +     +     ++  I   +            +      V+ R
Sbjct: 15  IKDELDAFFEDYQGVIYAYAIMNKKDPSQMQII---NNNPAWFDVYLERKYQFIDPVIIR 71

Query: 105 PTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGR 152
                   F      ++    +   +                 D     + L ++  K  
Sbjct: 72  GLRCVEDYFWENEVILSEGYNLTRIFNESFQYNIYRGQTFPLHDYLNNLVVLSVIGKKEF 131

Query: 153 IILRDRLWEIGL-LAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVI 209
               D+     +    +      +        K+  L+ RE + L W+S+GKT  EIA+I
Sbjct: 132 DFDIDKHRAKFMSFLIHLHQKTLNLYSQHQQKKNAFLSPRERQILKWVSDGKTYAEIAII 191

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV  ++ ++M+K        AI       ++
Sbjct: 192 LSIAERTVKFHMGNVMKKLGVNNARHAIKLGAELRLL 228


>gi|188591560|ref|YP_001796159.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus
           taiwanensis]
 gi|170938955|emb|CAP63962.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus
           taiwanensis LMG 19424]
          Length = 210

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 73/237 (30%), Gaps = 32/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S +  +   +  +          +   ++                  
Sbjct: 2   IRVLIAEDHAIVRSGLKQIVATTTDIVVSGEAADGAAALEQLRT---------------G 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      DL+R + L               L   + +             
Sbjct: 47  EFNLLLLDMTMPGISGIDLIRRVRLEW--------PSLVILVLSMHNEAQVASRALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D   +   +  L   G+ I    +  +          F            L+
Sbjct: 99  SGYVTKDSDPEILLGAIRKLAAGGKFIDPALVDAMV---------FHQRGTDAPAHEVLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE + L  ++ G+T +EIA  L +S  T++ +   +M+K   +  +  I YA+R+ 
Sbjct: 150 DREFQVLQRLATGQTVNEIAESLSLSAKTISTHKMRLMQKLGLQNNAELIRYAIRHG 206


>gi|302539385|ref|ZP_07291727.1| regulatory protein [Streptomyces sp. C]
 gi|302448280|gb|EFL20096.1| regulatory protein [Streptomyces sp. C]
          Length = 229

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 62/241 (25%), Gaps = 24/241 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E   V +++  +D      +S +   +  L  +                    GA    L
Sbjct: 5   EQSTVEVLIADDDPLVRMGLSVMLGGAPDLRIVAEAGD---------------GAEAVEL 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
            R        +D  +         R +           +     L    F      +   
Sbjct: 50  ARRHRPDVVLMDVRMPVMDGLAATRAVRA---MSDAPEV-----LVLTTFDADAYVLRAL 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +       A +   +        ++    +  +           +  D    + 
Sbjct: 102 RAGAAGFALKDTPPAELVEAVRRAAHGEPVLSPAVMRRLIDKVVALPEDGRGQDAG-ERL 160

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L  RE      I +GK++ EI   L +  +TV  ++++I+ K     R     +    
Sbjct: 161 AVLNERERAVALGIGQGKSNAEIGAALYLGVSTVKTHVSAILAKLGLNNRVQIALFVHDA 220

Query: 244 N 244
            
Sbjct: 221 G 221


>gi|256380091|ref|YP_003103751.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924394|gb|ACU39905.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 64/236 (27%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  + E     +  L      ++ +               L               
Sbjct: 3   ISVLLVDDHEIVRRGLLQLLQVEPDISVVGEAGTAADAVAAAAEL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       + R +    +                 +              
Sbjct: 48  KPDVAVIDVRLPDGSGVGVCRDIRSGNQPP-----PACL--MLTSYDDDEALFGAIMAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  L   G ++                   +   V   +   L+
Sbjct: 101 AGYMLKQVSGNDLVSAIRTLASGGSLLHAGVTAT-------VLQRLRGGPVEDPRYASLS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  I+EG T+ +IA  L ++  TV NY++S++ K     R+ A  YA + 
Sbjct: 154 PQERRILDLIAEGLTNRQIAGRLFLAEKTVKNYVSSLLHKLGFDRRTEAGVYAAKR 209


>gi|255745617|ref|ZP_05419565.1| BarA-associated response regulator UvrY [Vibrio cholera CIRS 101]
 gi|261210630|ref|ZP_05924922.1| BarA-associated response regulator UvrY [Vibrio sp. RC341]
 gi|262159108|ref|ZP_06030220.1| BarA-associated response regulator UvrY [Vibrio cholerae INDRE
           91/1]
 gi|262169466|ref|ZP_06037158.1| BarA-associated response regulator UvrY [Vibrio cholerae RC27]
 gi|262190260|ref|ZP_06048532.1| BarA-associated response regulator UvrY [Vibrio cholerae CT
           5369-93]
 gi|262402434|ref|ZP_06078995.1| BarA-associated response regulator UvrY [Vibrio sp. RC586]
 gi|255736692|gb|EET92089.1| BarA-associated response regulator UvrY [Vibrio cholera CIRS 101]
 gi|260840115|gb|EEX66695.1| BarA-associated response regulator UvrY [Vibrio sp. RC341]
 gi|262022279|gb|EEY40988.1| BarA-associated response regulator UvrY [Vibrio cholerae RC27]
 gi|262029293|gb|EEY47945.1| BarA-associated response regulator UvrY [Vibrio cholerae INDRE
           91/1]
 gi|262033855|gb|EEY52323.1| BarA-associated response regulator UvrY [Vibrio cholerae CT
           5369-93]
 gi|262351216|gb|EEZ00349.1| BarA-associated response regulator UvrY [Vibrio sp. RC586]
          Length = 188

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 11/174 (6%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D I+       +    A  +  +    ++    +   V    P            Y +
Sbjct: 21  HADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGAAGYLT 77

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   + ++    R I  +   ++ L     A+             +L+ RE++
Sbjct: 78  KGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLSERELQ 129

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  I++G+   +I+  L +S  TVN+Y   +  K            A+R+ I+
Sbjct: 130 IMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGIL 183


>gi|153832829|ref|ZP_01985496.1| transcriptional regulatory protein UhpA [Vibrio harveyi HY01]
 gi|148870963|gb|EDL69853.1| transcriptional regulatory protein UhpA [Vibrio harveyi HY01]
          Length = 202

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 27/220 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  ++      ++ E       + +         LD  ++
Sbjct: 4   VALVDDHVIVRSGFAQLLSLETDMNVVGEFSSVAEAR-----VGLPACKPDVVILDISMA 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                     V  +              Y S       
Sbjct: 59  DESGLTLLSEI---------PSGIACV--MLSVHDSPAMVEKSLKLGAKGYLSKRCSPDE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +      G  +  D            A    +         +LT RE E    ++ 
Sbjct: 108 LIQAVRTSASGGCYLTPD-----------IALKLATPSDKAATLTQLTRRENEVCQLLAR 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G     IA  LG+S  TV+ + A+ + K   K        
Sbjct: 157 GLDVKSIATELGLSHKTVHVHRANAIDKLGVKNNVELAKL 196


>gi|320531208|ref|ZP_08032193.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136577|gb|EFW28540.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 223

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 61/223 (27%), Gaps = 22/223 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           ++ R   V   P     L   +     +       + T+  G      +R         D
Sbjct: 17  EKIRVIVVDDDPFVLQALRAYLNEAQEIEVLSTFGSATDAFGF-----LRNYRVDVLITD 71

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +       L+  +           +     +    F       T      N +     
Sbjct: 72  VRMPGMDGLQLLTKVKQ--------GMPEVAVIVLTSFDDDEAMRTALDRKANGFLLKDS 123

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   ++     G  I       +       +   +           +T  E   L 
Sbjct: 124 SAEEVIRAVIAAHNGGTTISPATTSRL------VSQYLRPVPSSRP---GVTEAEQAVLD 174

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + EG ++ EIA  L IS  TV ++++ +M+K    +R   + 
Sbjct: 175 LLCEGYSNAEIADQLFISEATVKSHVSHLMKKYGVSSRLKLVV 217


>gi|300859427|ref|YP_003784410.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686881|gb|ADK29803.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302207104|gb|ADL11446.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis C231]
 gi|302331665|gb|ADL21859.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis 1002]
 gi|308277359|gb|ADO27258.1| Two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 69/244 (28%), Gaps = 38/244 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   +D +  +  +                            
Sbjct: 2   IRVLLADDHEIVRLGLRAVLESADDIEVIGEVATAE--------------------GAIA 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITP 122
             Q   +D I+        V    L+        ++R        L    + T  + +  
Sbjct: 42  AAQAGGIDVILMDLRFGPGVEGTRLTNGADATAEIKRTMEKSPHVLVVTNYDTDADILGA 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +         +       +                    
Sbjct: 102 IEAGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRL-------------MTRVRTP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  ++ G ++ +I  +L +S  TV +++  I  K   ++R+ A+A A  
Sbjct: 149 RTSLTPRELEVLKLVAGGSSNRDIGRVLLLSEATVKSHLVHIYDKLGVRSRTSAVAIARE 208

Query: 243 NNIV 246
             ++
Sbjct: 209 QGVL 212


>gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
 gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 20/229 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSI 77
            TS  + +    D    +  +   VS    +  + T   GA   LL+    F    LD  
Sbjct: 1   MTSPKAKILLVDDHTLILQGIKHVVSQMPEIEKVYTASSGAEAMLLIAMQPFDIYLLDVE 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F+L+  +            +            L           +     + D+
Sbjct: 61  LPDTNGFELIETILQKH-----PEARILINTMHEEIWILKRLT---KASISGAILKSADI 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + +  +   G+            L     ++            +LT RE+E L  I
Sbjct: 113 NELTLAIQTILKGGQY-----------LCKRFKSILNRMQTEEQIKEQLTLREMEVLQAI 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  + EIA +L +S NT+  +  S+M K   +     +  A+   I+
Sbjct: 162 AKGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDLVLKAINLGII 210


>gi|302521952|ref|ZP_07274294.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. SPB78]
 gi|302430847|gb|EFL02663.1| LOW QUALITY PROTEIN: two-component system response regulator
           [Streptomyces sp. SPB78]
          Length = 194

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 2/139 (1%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            L    F                +   T +   +   +  +     ++       +  LA
Sbjct: 58  VLVLTTFGLDAYVFGALRAGAAGFLLKTAEAGELVAAVRTVAAGDGVVDPAVTRRL--LA 115

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +                 LT RE E L+ + EG  + EIA  + ++  TV +++  ++ 
Sbjct: 116 EFARGGTGRERPAPEGLARLTPREREVLSCLGEGLGNAEIAERIDVAEGTVKSHVRRLLA 175

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K   + R  A   A    +
Sbjct: 176 KLGLRNRLQASLLARDLGL 194


>gi|126661670|ref|ZP_01732679.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617044|gb|EAZ87904.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 201

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 34/206 (16%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +   +      ++ + +      K          L         + +       +
Sbjct: 1   PSVAIIALDLPDIDGIEVTQRL------KNDPQTHSTQILILTNKTKEEDVLAAFVAGAD 54

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLW--------------EIGLLAAYQANMFK 174
            Y     + +++   +         I  +                 +I L +     +  
Sbjct: 55  SYLLKDIEFSQLIEAIEYTHEGNAWIDPNIANIVLQQIKKPAKSSTKIKLSSVSVHTLLN 114

Query: 175 SYDVHWGKD--------------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +      ++              + LT RE++ L  I  G  + +IA  L I+  TV  +
Sbjct: 115 NNQSVQVEEKTCIKETHTQLLDIYPLTERELDVLELIVGGCNNADIAEKLCITVGTVKTH 174

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I+ K     R+ A   A+R+ +V
Sbjct: 175 VRNILNKLCVDDRTQAAVRALRSGLV 200


>gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 199

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 28/223 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   + +   M  + +   G     LV+        +D  +     
Sbjct: 3   EIVIAEDQQMMLGALGALLDFEADMKVVGKAHNGEEAIKLVKALNPNICIMDIEMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D      L +             +    F                Y         +   
Sbjct: 63  LDA--AYELKDHS--------CRVMVLTTFAQPGYFERARRAGVEGYLLKDSPSEDLAAA 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+   + +                 D+ +  +  LT RE + L  I+EG+T+
Sbjct: 113 IRTIMDGRRVYAPELV-----------------DMVYHNETPLTEREEQVLKLIAEGRTT 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L I+  TV NY++ I+ K     R  AI+Y  +   +
Sbjct: 156 QQIADELKITNGTVRNYVSVILDKLEVGNRIEAISYYQKKGWL 198


>gi|25027179|ref|NP_737233.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259506684|ref|ZP_05749586.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|23492460|dbj|BAC17433.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259165729|gb|EEW50283.1| two component system response regulator [Corynebacterium efficiens
           YS-314]
          Length = 230

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 64/253 (25%), Gaps = 40/253 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  +     S V               L   V        + +         +   
Sbjct: 2   VQVFLVDDHSVFRSGVK------------AELGSAVEIVGEAGTVADA-----VTGITQT 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++R +  +  +           L   V     + I       
Sbjct: 45  RPDVVLLDVHMPDGGGLAVIRRVLEAGVETI--------FLALSVSDAAEDVIAIIRAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-------------K 174
             Y + +     +   +  +              +    A   +                
Sbjct: 97  RGYVTKSISGEELVEAINRVNSGDAFFSPRLAGFVLDAFAAPDSRAGAGIVDAPEKDAAV 156

Query: 175 SYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT    
Sbjct: 157 EKGAVIDDPIVDALTRRELEVLRLLARGYTYKEIGKELFISVKTVETHASNILRKTQQSN 216

Query: 233 RSGAIAYAVRNNI 245
           R     +A   ++
Sbjct: 217 RHALTRWAHSRDL 229


>gi|115353151|ref|YP_774990.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|115283139|gb|ABI88656.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
          Length = 218

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 71/237 (29%), Gaps = 31/237 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  +       V HL     +   +   +        +   T               F
Sbjct: 5   ILLVDDHAIVRQGVRHLLIDRGVAREVTEAETGSDAVAAVDRQT---------------F 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +L++ +                      +      +       + 
Sbjct: 50  DVILLDISLPDTNGIELLKRIKRKL-----PGTPVLMFSM---YREDQYAVRALKAGASG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y S T + A++   +  +    + +       +          + S++       +L+ R
Sbjct: 102 YLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLSDR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 154 EYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|227538925|ref|ZP_03968974.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770449|ref|ZP_07080328.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
 gi|227241128|gb|EEI91143.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300762925|gb|EFK59742.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 211

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 23/226 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V       + L+R+I  +   +            G      V+ +      LD  +  
Sbjct: 9   AIVDDHLIVLEGLSRLIESNPEYTIAGTF-----THGYDFLTFVKTEPVDIVLLDISLPD 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               DL   + + +      ++     +   +   + +           Y     D+  +
Sbjct: 64  ISGIDLC--LQIKKVAPDAAIIAISNHIERSIILQMLQ------NGAVGYLLKNVDLHEL 115

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           +  L            D    I     +  ++ +           LT RE E L  I+ G
Sbjct: 116 KNALNEALSGKVTFSSDVKEIIA--RPHLHDLIELPK--------LTKREKEILQHIALG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+  IA  L +S  T+  +   +M K   K  +  I  A+ +N++
Sbjct: 166 KTTTTIADELFLSPLTIETHRKRMMSKFKAKNMAALIKTAMEHNLI 211


>gi|120613018|ref|YP_972696.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|326319058|ref|YP_004236730.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|120591482|gb|ABM34922.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
 gi|323375894|gb|ADX48163.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 209

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
           H+    D       +  T++    +    E  G S    ++R        LD  +     
Sbjct: 3   HVVLCDDHAVLRRGIRDTLTEAPDIQVTGEAGGYSELREILRKAPCDVLLLDLNMPGRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +++  +  +      + ++       P        +         Y +   D   +   
Sbjct: 63  LEVLSSLKET-----DSAIKVLVVSMYP---EDQYALRCLRAGAQGYANKAGDPMELIEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + +  +      +LA   A               L+ RE++ L  I+ GK  
Sbjct: 115 VRTVMKGRKYLTPEVA---QMLADSLAQPAPELPHEA-----LSERELQTLVKIASGKRL 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y + ++ K      +    YA+RN +V
Sbjct: 167 SDIAEELMLSPKTVSVYRSRVLEKLKLSNNAELTVYAIRNQLV 209


>gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157]
          Length = 204

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 60/216 (27%), Gaps = 21/216 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVG------ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D        + A  E  G      A  F   +  +  +   D ++       +   
Sbjct: 3   VLIADDHELVLDTLVAFIEAAGGIEPTTAPDFATAKAKIESDGPFDLVLLDLNMPGMNGL 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             L                      +              +   T     +   +  +  
Sbjct: 63  SGLETCIGMDRARHVALFTGD---ASRDLAERALELGAAGFVPKTLPAKSLVNAIRFMAM 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             + +                   +  +       +LT RE + L  ++EGK++ EIA  
Sbjct: 120 GEQYLP------------VGFMSAEQPNDTHPMAKKLTERERQVLKGLTEGKSNKEIARD 167

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L +S  T+  ++ ++ RK     R+ A   A    +
Sbjct: 168 LDLSEPTIKLHVKTLYRKVGVSNRTQAAMAAREAGL 203


>gi|262202270|ref|YP_003273478.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085617|gb|ACY21585.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 73/232 (31%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            +   T  V   P   D +AR + L   VS            G +   L+R        +
Sbjct: 2   ANPLVTVVVDDHPFFRDGIARGLTLSGRVSVIGEAG-----DGRAALDLIREVTPDVAVV 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D+   +                 L        P          + Y S  
Sbjct: 57  DYQMPQMTGADVAHAVTRDGLS--------TRVLLLSAVTDAPIVFEALQRGASGYLSKD 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   I   ++ +     ++  +       LA    +  +++         L+ RE + L
Sbjct: 109 ADRDTIVGAVLRVAKGDTVVPPE-------LAGGLVDQIRAHTTTGSPA--LSEREHQVL 159

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              ++G++  ++A  L I  +TV  +   +  K     R+ A+A  +R  ++
Sbjct: 160 VGFAQGRSIPQLAAELFIGASTVKTHTQRLYEKLGVSDRAAAVAEGIRRGLI 211


>gi|282801728|gb|ADB02831.1| AzicR2 [Kibdelosporangium sp. MJ126-NF4]
          Length = 214

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 59/225 (26%), Gaps = 28/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D L+ +   D                GA    L          +D  +   
Sbjct: 10  IVDDHPVVRDGLSGLFGRDPDFEVVGEA-----ADGAEAVRLAEQLRPDVILMDLRMPGM 64

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +A                L    + T    +         Y         + 
Sbjct: 65  DGVAATRELAGRG-----------RVLVLTTYDTETHVLPAIEAGATGYLLKDAPRDELL 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++       +               V       L+ RE+E L  ++EG 
Sbjct: 114 RAVRATARGEAVLAPSAAALLM------------SRVRASAAGPLSQRELEVLHLVAEGA 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ E A  L ++  T+ +++ +I  K     R+ A+       ++
Sbjct: 162 TNREAAARLFLTEATIKSHLLNIYGKLGVSDRAAAVTAGFNRGLL 206


>gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 69/228 (30%), Gaps = 13/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            T F + +    D       L   +S    +  + E V     + +         LD  +
Sbjct: 1   MTRFPALILVADDHSVVREGLKAVLSRHSDLRVVAEAVDGIQAVELAGGDIDLAILDVAM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R +     ++    L          +          +     Y        
Sbjct: 61  PRMTGLQAAREI-----NRRAPDLPILMLSM---YDREEYFFEAISAGAAGYVLKRQADQ 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I             I    L  +  +  Y   + +      G    LT RE + +  I+
Sbjct: 113 DIVEACRAALRGESFIYPAALTSL--MRTYLDRLARGERPGRGP---LTPREADVVKLIA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG ++ EIA  L IS  TV+ + A+I+ K   + R     YA+R  ++
Sbjct: 168 EGHSAQEIADCLSISPRTVDRHRANILEKLDLRDRVDLTRYAIRAGLI 215


>gi|226225845|ref|YP_002759951.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089036|dbj|BAH37481.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 231

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 65/231 (28%), Gaps = 7/231 (3%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSI 77
               +  +   +D       L   +S    +  + E   G     L          +D  
Sbjct: 1   MRPDLIRVILVADHQIVRAGLKAVLSTAKDITVVGEGGNGKDALALAERLDPHVIVMDLS 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRP--TELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +         R +      + +   +      L   +       +         Y   + 
Sbjct: 61  MPDMDGLTATRELQKVNAGRVHPADEPATRRVLVLTMHTEDEHLVALLEAGAGGYLLKSV 120

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +      +       +    A +            +  +LT RE   L 
Sbjct: 121 ADRELVDAIRTVAAGDVYVQPSAARALARGLAKREGHADERA----RFEKLTDREQVVLK 176

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG T+ EI   L IS  TV+ Y   I  K     R+  + +A++  ++
Sbjct: 177 MVAEGYTAPEIGEHLTISPKTVDTYKQRIGEKLGLTHRTDYVKFALKLGLL 227


>gi|170780942|ref|YP_001709274.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155510|emb|CAQ00621.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 240

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 57/240 (23%), Gaps = 25/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +V+  +D    + ++ L      L  +                    G +   ++ 
Sbjct: 22  PPIRLVIVDDDALVRAGLAMLLGGGHGLEVVGEAAD---------------GLAAGAVIA 66

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +                        +    +    F      +     
Sbjct: 67  RTAPDVVLMDIRMPVCDGITATAREVARR--------RDLPVIVLTTFDADELVLGALRA 118

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +         +   +  +     I+    L  +  +                +   
Sbjct: 119 GARGFLLKDTPPVDLVQAVRQVAAGRSILSPSVLDTV--IGVAAQRDRADRTAERERFMT 176

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    I+ G ++  IA  L +   TV  ++  ++ K   + R           +
Sbjct: 177 LTEREQEVALAIARGWSNARIAADLFLGVATVKTHVGHVLDKLGVEGRVQVAVLVHEAGL 236


>gi|296123119|ref|YP_003630897.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015459|gb|ADG68698.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 284

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 27/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + +     +S   T       +     T    + +  +               
Sbjct: 71  VRVYLVDDHQMILDCLSAYLTADSQFEVVGKATNTEQALLEIAQI--------------- 115

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +     FD+   +                 ++   + +            
Sbjct: 116 QPDVVVMDVELPGRSVFDVAETLRTKAHS--------VRVIYLSGYASDVLLSRALKPGC 167

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      V+ IR  ++           +    +   A    +  +           LT
Sbjct: 168 FGYLLKGEPVSAIRQAILRAIDGEMSFSPEIRQRL---AQDPVSR-RFSLPADTPLTGLT 223

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GR++E L  ++ G +  EIA ++ +S+ +V+++   IM K     R     +A+R  +
Sbjct: 224 GRQLEVLRHLANGASVKEIARLMHLSQKSVDSHKYRIMHKLGIHDRVELARFAIREGL 281


>gi|227505299|ref|ZP_03935348.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198097|gb|EEI78145.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 64/242 (26%), Gaps = 31/242 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V++ L  +     + V     ++  +               + A                
Sbjct: 2   VSVFLVDDHSVFRAGVRAELAQAADIEVAGDAGTVAEAVAGIAA---------------S 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++R                   L   V     + I       
Sbjct: 47  QPDVVLLDVHMPDGGGLAVLRGAPGPVY------------LALSVSDAAEDVIALIRAGA 94

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKD 183
             Y +       +   +  +               L      A  ++      +      
Sbjct: 95  RGYVTKNISGPELAAAVRRVHEGDAYFSPRLAGFVLDAFASGALAESKPGAPDESVDPAV 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L  ++ G T  EI   L IS  TV  + ++I+RKT    R     +A  +
Sbjct: 155 DALTRRELEVLRLLARGYTYREIGERLFISVKTVETHASNILRKTQQSNRHQLTRWAASH 214

Query: 244 NI 245
           ++
Sbjct: 215 DL 216


>gi|226304145|ref|YP_002764103.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183260|dbj|BAH31364.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++   D      +  +   +  +  +   +       ++                
Sbjct: 5   SRITVLIVDNDAWVRRGMKDILEAAPDIVVVAEAEDGDQVAAKVTRF------------- 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  ++     +  R +                 +    F      +     
Sbjct: 52  --RPHVVLMDLKMARVGGLEATRELMTMSNPP--------KVIAMTAFDVDDMVVQAVEA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + + S        +  + ++     +   D L  I       A+  +           
Sbjct: 102 GAHSFLSKDAAPQAFQQAVRVVASDHSLFSCDSLRAI------VASSPRRQAPDQTPLAS 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT ++ G  +  IA  L +   TV  +I+S+  K     R  A   A R  +
Sbjct: 156 LTEREREVLTILATGAANSVIAERLYLGETTVKTHISSLFAKLGVPNRVSASLIAFRCGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|86159176|ref|YP_465961.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775687|gb|ABC82524.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 215

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 24/226 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGA----------SHFLLVRWDLFQEQKLDSIVSSD 81
           +  R I ++   + +  +  +    G               L R +      +D  +   
Sbjct: 1   MAIRAIAVEDDEAVSKLIAQVLTAHGFEVCGTAATGEDGVALARRERPDVALVDLGLPKM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +                 +           +       + Y    F  A + 
Sbjct: 61  SGEDVIATIRQELPKTAC--------IALTAVDIPARVLNAMRAGASGYILKPFHAADLT 112

Query: 142 IGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +  +       I       +              D        L+ RE+E L  +  G
Sbjct: 113 KAVEDVLSGEAAPISPRAAKVLLQEF-----RGDPPDQRAKDGPALSKRELEVLQLLVHG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T  ++A  LGI+  TV  Y+  I  K    T++ A   AV   +V
Sbjct: 168 HTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLV 213


>gi|288959032|ref|YP_003449373.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911340|dbj|BAI72829.1| two-component response regulator [Azospirillum sp. B510]
          Length = 228

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 12/207 (5%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
            AL   +G   F +       +  LD I   + P DL+         +    ++R  +  
Sbjct: 17  AALATLIGGGPFRVTTHAASADDALDLIADGEEP-DLIVLALQDGMPEEIAGIRRLRDGT 75

Query: 110 CPVFHTLPENIT------PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
                 L + I             + Y + +     +   L L+     +        + 
Sbjct: 76  SARIAVLADTIADRSLSQSLKAGADAYLNKSMSSESLLRSLRLVMLGEVVYPTHVAGLLM 135

Query: 164 LLAAYQANMFKSYDVHWGK-----DFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                +     +Y    G        EL+ REV+ L  +  G+++  IA  L I+ +TV 
Sbjct: 136 AAVNERPQHGSAYGPMPGPIGMPTSGELSKREVQILRCLLAGQSNKAIARNLHITESTVK 195

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  ++MRK   + R+ A  +A++N +
Sbjct: 196 MHFKNVMRKINAQNRTQAAVWAIQNGL 222


>gi|284990498|ref|YP_003409052.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063743|gb|ADB74681.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 64/246 (26%), Gaps = 26/246 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + +VL  +D    + +  +   +  L  +            +             
Sbjct: 1   MSAGPIRVVLVDDDPWVRAGLGLVLRGALQLEIVGEAGDGGEGLEVITRT---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +         + ++             P  +    F      +  
Sbjct: 51  -----HPDVVLMDIRMPRMDGLTATQRLSEQP----DP----PKVIVLTTFDADDHVVRA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVH 179
            A   + +       A I   +  +     ++      ++        +     +     
Sbjct: 98  LAQGASGFLLKDTSAAMIVEAIQKVAAGEPMLSPSVTAQLIRRVVDAQSTGVNAERARTA 157

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +  +L+ RE +    + +GK++ EIA  L +S  TV  +++ I  K     R      
Sbjct: 158 AARLGQLSDRERDVAVAVGQGKSNAEIAGDLFMSLPTVKAHVSHIFVKLDVTNRVQIAIC 217

Query: 240 AVRNNI 245
                +
Sbjct: 218 VHEAGL 223


>gi|261341125|ref|ZP_05968983.1| positive transcription regulator EvgA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316417|gb|EFC55355.1| positive transcription regulator EvgA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 210

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +   +    +      +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLQKNSNIIVKLKSGDSHEVLDCVR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  ++    F L++ +    KD           LF               
Sbjct: 47  -NHDIDLVILDIELTGTDGFALLKRIRNLNKDI--------KVLFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I  L +               D 
Sbjct: 98  AGANGFVSKRKDLGEIYNAVEMILNGYSFFPSETLSFINHLGSRTGAAV---------DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + ++I  K   ++    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIAEQLLLSNKTISAHKSNIYSKLGVQSIVELIDYAKAHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|169630970|ref|YP_001704619.1| LuxR family transcriptional regulator [Mycobacterium abscessus ATCC
           19977]
 gi|169242937|emb|CAM63965.1| Probable transcriptional regulator, LuxR family [Mycobacterium
           abscessus]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L       + +           R+ AL               
Sbjct: 2   ITVFLVDDHEVVRRGLADLLEEEADFSVIGQASSVAEAMARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     +           L    F      +       
Sbjct: 47  QPDIAVLDIRLPDGNGVELCRELRSKLPNLNC--------LMLTSFTDEHAMLDAIMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++       +        N  ++   +      LT
Sbjct: 99  GGYVIKDIKGMELISAVRTVGAGRSLLDNRAAAAL-------MNRLRAAADNPSPLAGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  I EG T+ +IA  + ++  TV NY++ ++ K   + R+     A + 
Sbjct: 152 AQERTLLELIGEGLTNRQIAERMFLAEKTVKNYVSRLLTKLDLERRTQVAVLATKL 207


>gi|226947735|ref|YP_002802826.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
 gi|226840805|gb|ACO83471.1| DNA-binding response regulator, LuxR family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 210

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 17/183 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       R +      LD  +      +  + ++                L    F   
Sbjct: 36  GLQALEYCRNNKIDIALLDIRMPVMNGVEATKIISREG---------HGKVLILTTFDED 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y         I   + +++    +I    +           N   S 
Sbjct: 87  DYIREALHFGAKGYILKNNTPDTIIDTIKMVYKGNSVIQDVVM-------DKVLNSCNSN 139

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             +  KD   + RE++ +  ISEG ++ EI+  L IS  TV NYI+SI+ KT  + R+  
Sbjct: 140 IKNIDKDM-FSRREIDVIEAISEGLSNKEISAKLFISEGTVKNYISSILSKTGLEHRTQI 198

Query: 237 IAY 239
             Y
Sbjct: 199 AIY 201


>gi|113866807|ref|YP_725296.1| response regulator [Ralstonia eutropha H16]
 gi|113525583|emb|CAJ91928.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L    S    M  + E   G     L+R        LD  +     
Sbjct: 3   RLMLADDHTIIRDGLKKIFSTVPDMQVVAEAADGCEVLALLRAQTPDVLLLDMSMPGRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L++ +                 L   ++      +         Y +   +  ++   
Sbjct: 63  ILLIQQIRA--------GYPALPILVLSMYRESQYAVQAIRAGAAGYLTKNVESDQLLGA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +          +A    +  +  D        LT RE++    ++EG   
Sbjct: 115 IRKVARGGTAVSPA-------IADKLLSQARQPDAML-PHARLTARELQVFQMLAEGLGI 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E+A  L +S  TV+ + A+I+ K    + +G + YA+R+ ++
Sbjct: 167 NEVAAALSLSAKTVSTHKANILGKMDIASTAGLVHYAIRHGLL 209


>gi|90420801|ref|ZP_01228707.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335092|gb|EAS48853.1| two-component response regulator, LuxR family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 70/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +    I+L  +          L  R    A +                        + L 
Sbjct: 1   MSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGE---------------AYRLY 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      +  R +           +   T      F      +    
Sbjct: 46  RETTPDIVVMDLTLPGPGGIEATRHIRQ---WDGAARILIFTMHQGSAF-----ALKAFE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y + + D A +   +  +    R +  D   EI           +  +       
Sbjct: 98  AGASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQEIA---------EERVEGRATAIA 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  ++ G TSDEIA  L +S  TV N    I  K   +T +  +  A+   
Sbjct: 149 DLSPRETEILRMLASGMTSDEIAAGLCLSVKTVQNNHYQIKAKLGARTDAHLVWVAIEAG 208

Query: 245 IV 246
           +V
Sbjct: 209 LV 210


>gi|89902142|ref|YP_524613.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346879|gb|ABD71082.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 262

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 78/264 (29%), Gaps = 40/264 (15%)

Query: 2   NFEIQQV-NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           N + +QV  +++  +D Q   F S   +R   L     +         +           
Sbjct: 16  NSKAKQVWRVLVVEDDPQTRDFFSGSVSRCAELLLAASVGTVAEAKAWLD---------- 65

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +       D  +      +++R            V+         +F      +
Sbjct: 66  ---DSANTVDVLLTDLGLPDGSGLEVIRHATRLNPACEPLVI--------SMFGDEDNVL 114

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG------------LLAAY 168
                    Y         I   ++ +      I       +             +LA  
Sbjct: 115 ASIEAGALGYIHKDSTPDDIAQTILDMRAGASPISPMIARRVLSKYQSDRRENNRVLAPV 174

Query: 169 QANMFK------SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            ++                +   L+ RE E L  I+ G +  EIA + G+S +TV  +I 
Sbjct: 175 LSSSIAIKSEATEDGEAKSQRGLLSPREQEVLALIARGFSYTEIARLQGLSVHTVQTHIK 234

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           ++  K +  ++S A+  A R  ++
Sbjct: 235 NLYGKLSVHSKSEAVFEATRMGLL 258


>gi|84684996|ref|ZP_01012895.1| autoinducer-binding transcriptional regulator LuxR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666728|gb|EAQ13199.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2654]
          Length = 225

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 20/224 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
            D   ++      + +  G  H +    +   E+      +  +    V      +  + 
Sbjct: 4   ADSLEAFQAATEQVCDIYGVLHCVYHWVNSDGERFG----AGTYSSVWVDRYLEMDYLRM 59

Query: 99  YNVLQRPTELFCPVFHTLPE----------NITPPAGMDN-RYCSLTFDVARIRIGLMLL 147
             V+    + F P      +          +     G+ N  Y               L 
Sbjct: 60  DPVIFGCFQRFTPANWKDLDWTTKAARAMLDDALKHGLGNQGYSIPLHGPQGQFALFTLN 119

Query: 148 FPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKT 202
                      +     ++ +LA         ++   G     L+ RE+  +  ++ G +
Sbjct: 120 HQAEDDDWAAFIDINGRDLIVLAHEFNRRALEFEGAEGIASPSLSPRELAAIRCLARGLS 179

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + A  LGIS +T+  YI S   K      + A+A A+   I+
Sbjct: 180 RAQAAAELGISEHTLRVYIESARHKLGALNTTHAVARALSTGII 223


>gi|163786374|ref|ZP_02180822.1| two component transcriptional regulator, LuxR family protein
           [Flavobacteriales bacterium ALC-1]
 gi|159878234|gb|EDP72290.1| two component transcriptional regulator, LuxR family protein
           [Flavobacteriales bacterium ALC-1]
          Length = 209

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 66/228 (28%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     L   +           + +     G   F  VR +       +  
Sbjct: 2   IRILIVDSHPIVRTGLELFLNSKPDFKVIGNLSS-----GIEIFEFVRRNQVDVIISEVD 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +    K      +        P        I+      + Y + T +V
Sbjct: 57  LPELNGITALRAIKKENKS-----INVLMFSHQP---EEIYAISTLKAGASGYLNKTANV 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +      +       +           +       K   L+ REVE L  +
Sbjct: 109 ETIEAAVRKIHSGEVSLSEKMDKHLR------YEDTRKSRSRMFKK--LSTREVEVLKLL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S G+ + EIA  L I+  TV+ Y A + +K         I  A  +N+
Sbjct: 161 SIGRKNKEIAQELDINEKTVSTYKARLFKKLNVTNIIDLIHQAKHHNL 208


>gi|284032204|ref|YP_003382135.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811497|gb|ADB33336.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 219

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +D    + +  +   +  +A +            + A               
Sbjct: 6   PIRVLVVDDDALVRASLEMMLDGAHGIAVVGQAADGDEVPAAVDA--------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +         R +   +             +    F T    +      
Sbjct: 51  HFPDLVLMDLRMPRVDGIVATRRVRARKNPPE--------VVVLTTFDTDENVLHALRAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A+I   +  +     I+       +   AA QA+          +   L
Sbjct: 103 ASGFLLKDTPPAQIVEAVRRVAAGDPILSPAITRRLMERAATQADAHTQAQEALSR---L 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE + +  ++ GK + EIA  L +S  TV  +I+ I+ K     R+     A    +
Sbjct: 160 SPREYDVMLAVARGKANAEIAAELFMSVATVKAHISHILTKLEVSNRTQIALLAHDAGL 218


>gi|167644589|ref|YP_001682252.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167347019|gb|ABZ69754.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 38/241 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  +       V+ +      +  +   +       R   L             
Sbjct: 8   SEIRVLVVDDHPMLREGVAAVLALQPDMTLIGEAENGAEAIARFREL------------- 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      + ++ +                 +    +    + +     
Sbjct: 55  --RPDVTLMDLQMPGTNGLEAIQAIRAE--------FPNAKIVVLTTYAGDAQALRALKA 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   +     +   +  +    R +  +   EI + A                D  
Sbjct: 105 GATGYLLKSTLRRELLDTIRNVHAGRRHLQSEVAHEIAIHAI---------------DEA 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE   L  ++ G+ + +IA  L +S +TV  ++ SI  K     R+ A+  A R  I
Sbjct: 150 LSEREAHVLRLVAAGRANKQIAWELSLSEDTVKAHLKSIFAKLDVADRTHAVTIAARRGI 209

Query: 246 V 246
           +
Sbjct: 210 I 210


>gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 202

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ L    D L  +            +  L               
Sbjct: 2   ITLYLAEDQSMLNSALTQLLDLEDDLHVLGSAGNGAKAWQDIQQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +  S+             +    F          A   
Sbjct: 47  KPDVAVLDIEMPKLTGLDVADKIHGSQL--------ATKIIILTTFAQKAYFERAIAAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +   + +  +                   +   LT
Sbjct: 99  NGYLLKDSPSDDLIDVIRKVMTGQTVYAPELVTNM----------------VTAESNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G +S +IA  L +S  TV NY+++I  K     R  A+  A +N  +
Sbjct: 143 DRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKNKWL 201


>gi|320353750|ref|YP_004195089.1| LuxR family two component transcriptional regulator [Desulfobulbus
           propionicus DSM 2032]
 gi|320122252|gb|ADW17798.1| two component transcriptional regulator, LuxR family [Desulfobulbus
           propionicus DSM 2032]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +++  I+L  +       +  L      L  +  ++   +       L            
Sbjct: 1   MKKPRILLADDHRMVAEGLRGLLEPDYQL--VGIVEDGRALLEAADRL------------ 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +      D  +      + VR +            +    +F  +   +    +   
Sbjct: 47  ---MPDVVVADVSMPLLNGIEAVRQLKKKN--------KEIAVVFLTMHLDVAYAASAFE 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y       + + + +         I      E+           +      G   
Sbjct: 96  AGASGYVLKHSAPSELLVAIGSALKGRTYITPLLAGEL-----LNYQRNRPSGDQEGGVA 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+ E L  I+EG +  E A +LGIS  TV  +  S+M     K+ +  + +AV + 
Sbjct: 151 RLTARQREVLQLIAEGLSVKEAAAVLGISSRTVEFHKYSMMEILGLKSSAELMRFAVEHG 210

Query: 245 I 245
           I
Sbjct: 211 I 211


>gi|313204637|ref|YP_004043294.1| two component transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443953|gb|ADQ80309.1| two component transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 211

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  + E     +  +      L  +            +  +               
Sbjct: 2   IKVFIVDDHEIIREGLKKILKEEADLVVVGEAQNGDEVLQNIKDI--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL+  +   +       +        P        +       
Sbjct: 47  DCDIMLLDMNMPGRSGLDLIGDLKKLK-----PHMHILVLSIHP---EDKFALRTLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  + + +  +F KGR +          LA   A  F            L+
Sbjct: 99  SGYVCKDTALEELVVAIRKVFIKGRYLS-------TTLAEQLAFDFMPDKGEQLPHESLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  ++ GK   +IA  L +S +TV  Y   I  K   K+      YA+ N +V
Sbjct: 152 NREQEIMYLLASGKKVKDIAADLQLSISTVFTYRVRIFEKLKIKSNVELTHYAITNKLV 210


>gi|16080459|ref|NP_391286.1| two-component response regulator YvfT [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311357|ref|ZP_03593204.1| hypothetical protein Bsubs1_18471 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315684|ref|ZP_03597489.1| hypothetical protein BsubsN3_18387 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320599|ref|ZP_03601893.1| hypothetical protein BsubsJ_18350 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324884|ref|ZP_03606178.1| hypothetical protein BsubsS_18506 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312958|ref|YP_004205245.1| two-component response regulator YvfT [Bacillus subtilis BSn5]
 gi|81814911|sp|O07019|YVFU_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yvfU
 gi|1945721|emb|CAB07991.1| hypothetical protein [Bacillus subtilis]
 gi|2635919|emb|CAB15411.1| two-component response regulator [YvfT] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320019232|gb|ADV94218.1| two-component response regulator (YvfT) [Bacillus subtilis BSn5]
          Length = 200

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 26/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  L   +     M  + + + G      +         +D  +     
Sbjct: 3   RLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   +                 +    F              + Y     ++  +   
Sbjct: 63  LNVAEELMKKGC--------VSKVIILTTFARPGYFERAVKAGAHGYLLKDGEIDDLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +       R+   +  + +                    +  LT RE E L   + GKT+
Sbjct: 115 IRKCVKGKRVFSPELTFNM-----------------MRDENPLTVREQEILRLAALGKTT 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I + L +S+ TV NYI+ I++K   K R+ A + A     +
Sbjct: 158 KDITLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEEKGWI 200


>gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 167

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 4/146 (2%)

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
            V      L         + +         Y   +   A +   +        +      
Sbjct: 22  AVSASSRVLVLSASDERDDVLQAVKAGAAGYLVKSASKAELAQAVTDTAAGRAVFTPS-- 79

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             +  L   +                LT RE E L ++++G ++ +IA  L +S  TV N
Sbjct: 80  --LAGLVLGEYRRIAQSKDDGPTRPRLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVEN 137

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ +  RK     R     YA+ + +
Sbjct: 138 HVQATFRKLQVANRVELARYAIEHGL 163


>gi|29654272|ref|NP_819964.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|154706559|ref|YP_001424463.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|161830115|ref|YP_001596757.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331]
 gi|165923366|ref|ZP_02219703.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
 gi|29541539|gb|AAO90478.1| response regulator [Coxiella burnetii RSA 493]
 gi|154355845|gb|ABS77307.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|161761982|gb|ABX77624.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331]
 gi|165916692|gb|EDR35296.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHVLIRRGMRLMLEQIKGIRIVGEASTGEEGLALRREKEPGVVILDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                       +    ++                +         + + + D A +   +
Sbjct: 64  -----ELARRLLRRDPEIKILVVTAM---EGELLPMRLLEVGVRGFITKSSDSAELERAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I       + L                    +L+ R++E L  +++G  ++
Sbjct: 116 RAVHSGQRYIGSAIASRLAL---------SKTTAAKSPFDQLSNRQMEVLLLLAKGMNAE 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 167 SIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQYGLI 208


>gi|157147038|ref|YP_001454358.1| hypothetical protein CKO_02815 [Citrobacter koseri ATCC BAA-895]
 gi|157084243|gb|ABV13921.1| hypothetical protein CKO_02815 [Citrobacter koseri ATCC BAA-895]
          Length = 209

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 74/229 (32%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +  +  E   A     +  D      LD  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLDVAGQYSSAAEAWPA-----LLRDDVNVAVLDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +             +   ++ T     +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQKPTF--------RAIVLSIYDTPAFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D L  +           +  +        LT RE E    +
Sbjct: 109 EELVQAVRSVGMGGHYLCADALRAL-----------RGGEQPAQVLEVLTPREREVFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ + ++
Sbjct: 158 VKGDSVKEIAFKLDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206


>gi|269126467|ref|YP_003299837.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311425|gb|ACY97799.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 232

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +     +    E   G     L R        +D  +     
Sbjct: 3   RVLVADDQAAVRAGLVLILRSAPDIEVAGEAADGLEAVELARRLRPDVVLMDVRMPRLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +     D           L    F                +     D  R+   
Sbjct: 63  ISATGELTALGVD----------VLVLTTFDVDEYVFGALRAGAAGFLLKDIDADRLIEA 112

Query: 144 LMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +     I+       +    AA                 ELT RE + L  + EG +
Sbjct: 113 VRTVAAGEGILAPAVTRRLIREFAARPGRPAAPLASPPPGPAELTPRERQVLGCLGEGLS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L ++  T   +++ I+ K   ++R  A   A    +
Sbjct: 173 NAQIAARLNMAETTAKTHVSRILAKLGLRSRVQAAILAQELAL 215


>gi|222106444|ref|YP_002547235.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737623|gb|ACM38519.1| two component response regulator [Agrobacterium vitis S4]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  I++  + +   S +  + + +  L  +      +        L            
Sbjct: 1   MTKARILIADDHDLARSGIISVLSGAPDLEVVAEARDGLEAITLAAQL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +       +    A +E  +     +        +  +L        
Sbjct: 49  --------LPDIALLDVRMTPMDGLTAATEIRRVSPSTRIMM---LTMHDSLDYLEAAVK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +           +  +                      
Sbjct: 98  AGASGYALKDVRRDTLLRMIRAVLDGQEFFDTGLVRRMLT-------RVSRTSPAEDAIS 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E L  ++ G T+ EIA  L I+  TV  ++  I+ K     R+ A   A +  
Sbjct: 151 QLTTREREILQEVARGATNKEIARRLSIAPGTVKVHVERIIAKLRVGDRTQAAVLAAQAG 210

Query: 245 IV 246
           +V
Sbjct: 211 LV 212


>gi|86357364|ref|YP_469256.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281466|gb|ABC90529.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 207

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 65/240 (27%), Gaps = 35/240 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSH-LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + Q+ + +  +       V+  L   SD +                            ++
Sbjct: 1   MTQITVGVVDDHPLFREGVTRSLSEMSDFVVIGEGASSE----------------DAAMI 44

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +      LD  +       +   +ALS              L   V   +   +   
Sbjct: 45  ASNNRPDIMLLDVSMPGGGLAAIGNVLALS---------PTTKVLMLTVSEEVDTLLGAL 95

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   +  +    R +         + A    N  ++        
Sbjct: 96  QEGAMGYVLKGVGSRGLAEAIHTVLSGSRYVSPT------MSAKAMENSLQNGSSDKNS- 148

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A       
Sbjct: 149 --LTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGASNRTEAALQWRER 206


>gi|330962290|gb|EGH62550.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 222

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQQL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPHLKVVIFTMDDSTDHLEAAISAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIAGLQRVARGEEALNSAVSARL------LRRMTERNTSGASAPEALT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|329938540|ref|ZP_08287965.1| luxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302513|gb|EGG46404.1| luxR family two-component response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 27/238 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + + L  + E     V  L      +  +          +R+ AL             
Sbjct: 11  DPIRVFLLDDHEVVRRGVHDLLDDEPDINVVGEAATAEQALVRVPAL------------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       + R +     +           L    F      +     
Sbjct: 58  --RPHVAVLDVRLPDGDGVSVCRELRSHMPELAC--------LMLTSFDDEEALLDSIMA 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y       + +   +  +     ++  +    +           +  +   G    
Sbjct: 108 GASGYVLKQIQGSDLVSAVRTVAAGQSLLDANATARLLARLRGGQEQEEEAEALPG---- 163

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E L  I EG T+ +I   L ++  TV N+I+ ++ K   + R  A   A + 
Sbjct: 164 LTPREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221


>gi|318605170|emb|CBY26668.1| putative two-component response regulator precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 198

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G+     ++ +      +D  + +   F L++ +                 LF    +  
Sbjct: 25  GSEALETLKNNTVDLVIIDIELPNFDGFSLLKKLQQRGFS--------GKSLFLSAKNEQ 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +       N + S   D++ I      +         +    +  LA   ++     
Sbjct: 77  VFAVRALQAGANGFISKNKDISEILFAAQNVLRGYSFFPSET---LIQLAGQPSSH---- 129

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   L+ RE+  L ++  G ++ +IA  + IS  TV+ Y   I+ K    +    
Sbjct: 130 -DPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIEL 188

Query: 237 IAYAVRNNIV 246
             YA  +N+V
Sbjct: 189 ADYAHTHNLV 198


>gi|238756486|ref|ZP_04617792.1| Response regulator uvrY [Yersinia ruckeri ATCC 29473]
 gi|238705302|gb|EEP97713.1| Response regulator uvrY [Yersinia ruckeri ATCC 29473]
          Length = 206

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 64/211 (30%), Gaps = 19/211 (9%)

Query: 37  IPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             +   +     +  L E   G       R +      +D  +      +  R +     
Sbjct: 3   AGIRRILEDIRGIKVLGEAQCGEDAVKWCRSNSVDIVLMDMNMPGIGGLEATRKILR--- 59

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
             +   ++    +   +    P            Y S       +   +  +    R I 
Sbjct: 60  --FSPDIK---VIMLTIHTENPLPAKVMQAGAGGYLSKGAAPQDVINAIRAVHSGQRYIA 114

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISR 214
            D   ++ L            +      F  L+ RE++ +  I++G+  +EI+  L +S 
Sbjct: 115 SDIAQQMAL---------SQLEPQVDTPFACLSERELQIMLMITKGQKVNEISEQLHLSP 165

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TVN+Y   +  K            A+R+ +
Sbjct: 166 KTVNSYRYRMFSKLNISGDVELTHLAIRHGL 196


>gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 223

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 68/240 (28%), Gaps = 24/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   S    +      +  +  +    +       L               
Sbjct: 3   IRVLIADDQEMMRSAYGMILGAQPDMEVVGSVGDGEAAVSEARRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +A                L    F              
Sbjct: 48  RPDVCLLDIRMPRVDGLEATRLLA--GPGVRDP----LNVLIATTFDLDEYVYRALRHGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             +       A +   +        +I  +    +  LA                  E L
Sbjct: 102 CGFLLKDMSPALLVEAVRAAAAGTSMISPNVTVRL--LAHLAPERGAERAEESAALVEPL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E +  ++ G+T+DE+A  L +   TV  ++ +  RK A + R    A+A R  +V
Sbjct: 160 TERELEVVRLVALGRTNDEVAGELHLGVATVKTHLGNAQRKLAARNRVEVAAWAWRTGLV 219


>gi|254444518|ref|ZP_05057994.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258826|gb|EDY83134.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 70/236 (29%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +       ++ +    + L      + + S    +                  
Sbjct: 3   IRVFIVDDHPLVRQGLTQIIGGQEDLEVCGEAEDSSSAMRGI---------------DNT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +   +L++ +          + ++   L   +               
Sbjct: 48  KPDVVIVDISLQGNNGLELIKNLKA--------IYEKLPILVFSMHDESIYAQRALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFEL 186
             Y        +I   +  +      +        +  + +  +N   S          L
Sbjct: 100 KAYVMKKESSEKIVEAIRKILKGEIYVSPRVADQVLHQIVSGPSNASASPVDR------L 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T RE+E +  I  G ++ EIA  L +S  T+ ++ A +  K   +  +  + ++V+
Sbjct: 154 TDRELEVVQLIGRGLSTREIAESLHLSVKTIESHRAHVKEKLNLRNATELVQFSVQ 209


>gi|182414312|ref|YP_001819378.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177841526|gb|ACB75778.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D L   + L   ++    M  + +   G     + R        LD  +     
Sbjct: 11  RVMLVDDHLIVRMGLSFAINNQPDMQVVAQAEDGHEAIEVYRQHQPDVVILDLRMPKRNG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +                 L    + +  E         + +      +A +   
Sbjct: 71  IETIGVLRRE--------FGAVRVLVLSNYGSGDEVSAALQAGASGFIGKDTALAELLDA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    +++  +    +                       L+ RE+E L  I  G ++
Sbjct: 123 IRKIRAGDQVVPSEVARRLA----------------SRITSHLSTRELEVLALIGRGLSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L +  +TV  ++ +I+ K     R+ A+   V+  I+
Sbjct: 167 KEIGAALNVVESTVKVHVTNILSKLGVADRTQAVLAGVKRGII 209


>gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
 gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria
           pomeroyi DSS-3]
          Length = 233

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 19/215 (8%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
            +  + E +   H      +         +    +  +                L     
Sbjct: 19  FLLQVREKLEMDHAAYAGLNPAAGAIHGYV---TYSDEWKLHYQEQGFHMIDPTLHMSQR 75

Query: 108 LFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRIGLML----LFPKGRI 153
              PV  +  E                  D                L +       + + 
Sbjct: 76  SIAPVDWSRLERSNDFRRVFRDAHDFGIGDQGLTIPVRGPYGDVGLLSVTRECSTEEWQK 135

Query: 154 ILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           ++R  + ++  LA +  +   S D          L+ REVE L W++ GK+  +I  IL 
Sbjct: 136 LVRHVIGDLQSLAVHIHDTVMSSDMLGRILYHPSLSTREVEILQWVAAGKSQQDIGDILS 195

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  ++ S   K    T + A+  AV   ++
Sbjct: 196 ISHRTVEVHLRSSREKLCALTTAQAVGRAVGLGLI 230


>gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661]
          Length = 247

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 27/217 (12%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           V  ++       + +    D  + S+   +  +    +       VL        P    
Sbjct: 24  VQFNNIKYAYAIMSKRNPADFSIISN-RQEWFKVYIENNFQFIDPVLITALYRMTPFSWD 82

Query: 116 L------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---- 159
                          ++     + N Y  +  D     + L ++  K      + L    
Sbjct: 83  ENLMLNKGVKVPKLFDMARNHDIINGYTFVLHDHNNNLVVLSIMLDKHCDDNIEELIQLN 142

Query: 160 -WEIGLLAAYQANMFKSYDVHWGKDFEL---------TGREVECLTWISEGKTSDEIAVI 209
             ++ +L                +  +          T RE E + W S GK+  EIA+I
Sbjct: 143 KDKLQMLLITTHEKLTQLYQEQSRKADFEEMNTRELFTSRENEIIYWASVGKSYQEIALI 202

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LGI   TV  +I + ++K        AI   +  N++
Sbjct: 203 LGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGIELNLI 239


>gi|255606123|ref|XP_002538507.1| Response regulator gacA, putative [Ricinus communis]
 gi|223511807|gb|EEF23876.1| Response regulator gacA, putative [Ricinus communis]
          Length = 268

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 18/199 (9%)

Query: 49  MYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
              + E   G   + L    L     +D  +      + +R          Y   +    
Sbjct: 85  FEVVAEAESGERGYQLFGEYLPDAAVMDLTMPGMGGMEAIRR-----TIARYPAAKLLVL 139

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
                                 Y +       +   L  +      +  +   +I L   
Sbjct: 140 SM---HENAAFANQALKAGAKGYLAKNSLAEELVDALQAILNGKTYLSPEIARKIAL--- 193

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 ++ +       +L+ RE E    ++EGK +++IA  L +S  TV NY  +I +K
Sbjct: 194 ------QTLEDKGDPMQQLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQK 247

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +    +  A+R+ ++
Sbjct: 248 LGITSPVEMVRLAIRHGVI 266


>gi|317055507|ref|YP_004103974.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315447776|gb|ADU21340.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 209

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 16/189 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           A     G+    + +        +D  +      +    +                 L+ 
Sbjct: 29  AAMGSSGSDAIDIYKNIRPDVMLMDIRMEGMTGLEAGEQILRD--------FPDAKILYL 80

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             F      +         Y     D   I   L  +     +     + ++  L     
Sbjct: 81  TTFSDDEYIVKALNIGAKGYILK-QDFEGIAPALEAVMGGQSVFGDKIVTKLPEL----- 134

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              K         + ++ +E E L  ++EGK++ EI+  L +S  TV NYI+S++ K + 
Sbjct: 135 --MKPKSDFNYDSYGISEKEKEILELVAEGKSNKEISAELFLSEGTVRNYISSLLDKLSL 192

Query: 231 KTRSGAIAY 239
           + R+    +
Sbjct: 193 RDRTQLAVF 201


>gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 13/189 (6%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A+   LV         +D  +      D +R +A                L   V     
Sbjct: 40  AAGVQLVERCAPDVAIVDLDLPDGSGIDAIRRIAECA--------PGTAVLVLTVSEADD 91

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +           Y      +  I  G+  +     ++       +               
Sbjct: 92  DLTDAVLAGGCGYLLKDAPIETIVAGVTAVAAGDAVLSPRVAATM-----LARMRASGRQ 146

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +L+ RE E L  ++ G  +  IA  L IS +TV N+I+SI+ K     R  A 
Sbjct: 147 TAARARAQLSPREQEVLRLVAGGMDNAAIAQELFISPHTVKNHISSILTKLHVANRIQAA 206

Query: 238 AYAVRNNIV 246
             AVR+ I+
Sbjct: 207 VRAVRDEIL 215


>gi|262403730|ref|ZP_06080288.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586]
 gi|262350234|gb|EEY99369.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586]
          Length = 202

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L      +   LD  +      D +  +   E D           +   V  + 
Sbjct: 31  GAEAIALAHDLQPELILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSA 82

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         + Y     +  ++   L       +                      + 
Sbjct: 83  ADIEALVKAGADGYLLKDTEPDQLVALLKQAMRGEKAFSESVER-----------YLLNR 131

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        LT RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 132 DDASNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 191

Query: 237 IAYAVRN 243
               +  
Sbjct: 192 TILYLER 198


>gi|229494564|ref|ZP_04388327.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229318926|gb|EEN84784.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++   D      +  +   +  +  +   +       ++                
Sbjct: 5   SRITVLIVDNDAWVRRGMKDILEAAPDIVVVAEAEDGDQVAAKVTRF------------- 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  ++     +  R                   +    F      +     
Sbjct: 52  --RPHVVLMDLKMARVGGLEATR---ELMIMSNPP-----KVIAMTAFDVDDMVVQAVEA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + + S        +  + ++     +   D L  I       A+  +           
Sbjct: 102 GAHSFLSKDAAPQAFQQAVRVVASDHSLFSSDSLRAI------VASAPRRQAPDLTPLAS 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E LT ++ G  +  IA  L +  +TV  +I+S+  K     R  A   A R  +
Sbjct: 156 LTEREREVLTILATGAANSVIAERLYLGESTVKTHISSLFAKLGVPNRVSASLIAFRCGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|220935078|ref|YP_002513977.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996388|gb|ACL72990.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 220

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
           ++++L  + E     +  L                 +    +  + E   G    +  + 
Sbjct: 2   IDVLLVDDHELVRMGIRGLL-------------DERAAVTGIQVVGEAHSGEEALVEAKR 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +         R +  ++             L        P         
Sbjct: 49  LKPDVVLMDINMPGIGGLVATRRIVEAQ--------PSVKVLVLTAMDEGPVPRWVLEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y +    +  +   +       R I       + L                    EL
Sbjct: 101 ASGYLTKGCRIEEMIAAIQGAMQGERHISPAVAQRLALGGL--------AKGQANPFDEL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GRE + L  I +G+T   IA  L IS  TV+ Y   +M K         +  A ++ ++
Sbjct: 153 SGRERQILLMILQGQTPQAIATALNISPKTVSTYKCRVMGKLGISNDMQLVTLAAQHGLI 212


>gi|145298529|ref|YP_001141370.1| DNA-binding transcriptional activator UhpA [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851301|gb|ABO89622.1| two-component system response regulator UhpA [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 196

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 52/212 (24%), Gaps = 30/212 (14%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--DSIVSSDWPFDLV 87
            D           ++    +  + E  G +   L        Q    D  +      DL+
Sbjct: 8   DDHQIVRSGFAQLLNLEPDLKVVAE-FGCAADALAGLPGSGVQLCVCDISMPDQSGLDLL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +                 +   V  +              + S       +   +   
Sbjct: 67  KLLPS-----------GLAVVMLSVHDSPALIEQALQAGAKGFLSKRCSPDELIAAVRTA 115

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  D   ++                       LT RE E    ++ G     IA
Sbjct: 116 AHGGCYLTPDIAHKLA----------------CNSQDPLTNREREVAQLLARGLEVKAIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LG+S  TV+ + A++M K            
Sbjct: 160 EQLGLSPKTVHVHRANLMDKLKVSNNVELAHR 191


>gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 15/214 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL---VRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++  D      + +    E  G    +     +           ++ +D     +    L
Sbjct: 5   VLIADDDPGIRLSVSRFLESEGYCCLMAGDGAQALEMIHHYQPHLLITDIAMPNMNGYEL 64

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
             + + +  L+    ++      L E I       + Y +  FD+  +   +  L  +  
Sbjct: 65  VRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGGDVYLAKPFDLNELAAVVRNLLDR-- 122

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                      L+         +      +  +LT RE + L  +  G ++ +I   L +
Sbjct: 123 ---------AQLVQMEWQQRQHAPKGQRVR-VDLTQREKDVLALLVAGLSNAQIGDRLHL 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  T+  +++S+ +KTA   R+  +  A+   +V
Sbjct: 173 SARTIEKHVSSLFQKTAVHNRAELVRLAIEQGLV 206


>gi|261856391|ref|YP_003263674.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836860|gb|ACX96627.1| two component transcriptional regulator, LuxR family
           [Halothiobacillus neapolitanus c2]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 22/227 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         LA +I  +  +  T    +     G +   L++ +       D  
Sbjct: 2   IRVMLVDDHTMVRKALAHLIGSEQGIGVTSEADS-----GEAALALLKTETVDVVLCDIH 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +     +           +            +      + Y +     
Sbjct: 57  MPGMGGLEAIRRIQARYPEIGL--------IAVTAEADAALARSVLEAGVHGYVTKDAPP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +     K R I      EI L +                   L+GRE + L  I
Sbjct: 109 QELITAIENARHKIRFISSRIAQEIALQSMR---------KTADPFETLSGREQQVLMMI 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EGK++  I+  L +S  TV+ Y   +  K         +  AV++ 
Sbjct: 160 LEGKSNQFISDALCVSPKTVSTYKVRLQEKLGVNNDIELLRLAVKSG 206


>gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 203

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 63/231 (27%), Gaps = 29/231 (12%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R             LA ++ L+  +    ++       G      VR        +D
Sbjct: 2   SPIRVLIADDQALVRGALATLLGLENDLEVVAQVGR-----GDEVLPAVREHAVDVALVD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +  S       ++          F                +     
Sbjct: 57  IDMPGRDGLAATAEVVGSGVPCRCLIV--------TTFGRPGYLSRGMEAGAAGFIVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +    R+I  +   E  LL                    LT RE E L 
Sbjct: 109 PPEELAEAIRKVHAGLRVIDPELAQESVLLG----------------PNPLTDREKEVLQ 152

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N  +
Sbjct: 153 AAATGADAREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203


>gi|254383353|ref|ZP_04998705.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194342250|gb|EDX23216.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 219

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 32/242 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +  D +  +     T    +R+ A            
Sbjct: 3   ENGKIKVFLLDDHEVVRRGVHELLSVEDDIEIVGEAGTTADALVRIPAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   ++D           L    F          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCREVRSQDEDIKC--------LMLTSFADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWG 181
               + Y         +   +  +     ++                   +         
Sbjct: 100 MAGASGYVLKAIRGNELLNAVRDVAAGKSLLDPVATAR-------VLERLRDGKNGKGDD 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 153 RLANLTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVA 212

Query: 242 RN 243
           R 
Sbjct: 213 RL 214


>gi|16767074|ref|NP_462689.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167992368|ref|ZP_02573466.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168241993|ref|ZP_02666925.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450800|ref|YP_002047821.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|136767|sp|P27667|UHPA_SALTY RecName: Full=Transcriptional regulatory protein uhpA
 gi|154408|gb|AAA27243.1| hexosephosphate utilization protein [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16422360|gb|AAL22648.1| response regulator (repressor) in two-component regulatory system
           wtih UhpB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194409104|gb|ACF69323.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205329377|gb|EDZ16141.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338886|gb|EDZ25650.1| transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248934|emb|CBG26791.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267996067|gb|ACY90952.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160322|emb|CBW19847.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914918|dbj|BAJ38892.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321226849|gb|EFX51899.1| Transcriptional regulatory protein UhpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|332990638|gb|AEF09621.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 196

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 60/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIVLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S  TV+ + A+++ K            
Sbjct: 150 AQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAHR 191


>gi|296130380|ref|YP_003637630.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022195|gb|ADG75431.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +  ++     M  + E  G      +V         LD  +     
Sbjct: 6   DVVLVDDHHMFRAGVKASLDAR--MRVVGEAAGVDEAVQVVHDLQPPVVLLDVHLPG--- 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                    +E  +    +     L   V     + +         Y +   D   +   
Sbjct: 61  ---GDGGGGAEVVRRCVDVPSTRFLALSVSDAAEDVVAVIRVGARGYVTKAIDPTALSDA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ +     +        +       A    + D    +   L+ RE E +  I+ G T 
Sbjct: 118 VVRVAGGDAVFSPRLAGFVLDAFGAAAGDVATGDDELDR---LSAREREVMRLIARGFTY 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  L IS  TV  ++++++RK     R+    +A    ++
Sbjct: 175 REVAGELFISIKTVETHVSAVLRKLQLSNRNELTRWAAARRLL 217


>gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 24/230 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
            +TS    +    D  A ++ L   +     +  + E   G       R  L     +D 
Sbjct: 1   MKTSAKIRVMLVDDHFAILMGLRACLKPEGDIAVIAEAADGGEAIEQYRAHLPDITLMDL 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +        +R                   +         +     +     Y      
Sbjct: 61  SLPRLDGVAAIR--------TICREFPEARIIALTTRQGDDDIHQALSAGARSYVMKNMP 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      + ++    +                   K   LT RE+E +  
Sbjct: 113 RQEMLRAIRAVHDGQEYLPQEVQTALL---------------QHEKRAPLTPRELEVIRL 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ EI + LGI+  T   +++ ++ K     RS A+  A+R+ I+
Sbjct: 158 LARGCSNKEIGMALGIAEITAKIHVSHLLSKMGVLDRSQAVMEALRHGII 207


>gi|290962712|ref|YP_003493894.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260652238|emb|CBG75371.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 11/217 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D           +     +  + E   G +     R        +D  +      ++ 
Sbjct: 4   ADDQDLVRAGFRLILDAQQGIEVVGEAADGLACVESARVLRPDVCLVDVRMPKLDGLEVT 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +A         V+          F                +       A +   +   
Sbjct: 64  RLLAGPGATHPTQVV------VVTSFDQDDYLTIALRNGACGFLLKDAAPALLIEAVRSA 117

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++       +  L   + +              L+ RE+E    ++ G+T+ EI+
Sbjct: 118 ARGDALVSPGVTVRLLRLLEERTSAAAGGVPGSA----LSARELEVARLVAVGRTNQEIS 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +S +TV  ++  I  K   + R    A+A  N 
Sbjct: 174 DELCLSLSTVKTHLGHIHHKLGVRNRVEVAAWAWANG 210


>gi|238915407|gb|ACR78200.1| response regulator [Pseudomonas chlororaphis subsp. aurantiaca]
          Length = 213

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    L  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLLKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++   +   ++              L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQPSSE--------SPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQVALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|213970619|ref|ZP_03398745.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|213924616|gb|EEB58185.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
          Length = 222

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    + L  +   D       +   L               
Sbjct: 10  IKVLVVDDHDLVRTGITRMLADIEGLQVVGQADSGEESLKKAREL--------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 55  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTAC---EEDPFPTRLLQAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 107 AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 160 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELALLAVRHGMV 218


>gi|160938544|ref|ZP_02085898.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438531|gb|EDP16289.1| hypothetical protein CLOBOL_03441 [Clostridium bolteae ATCC
           BAA-613]
          Length = 211

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 70/213 (32%), Gaps = 16/213 (7%)

Query: 39  LDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
            D        + A+ E       VG +      W L ++ + D ++      +      +
Sbjct: 7   ADDIQILRQGLRAILEQDKDIQVVGLAADGREAWQLCRKHRPDVVLMDMRMPEYDGSYGI 66

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +   + Y  ++         F              + Y     +  ++   +  +    R
Sbjct: 67  TRIKEDYPDIKVL---VLTTFDDRETVDAAVGSGADGYILKEMEDDKVIQSVKAVCAGMR 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +        +               +      +LT RE + +  ++ G  + EIA  L +
Sbjct: 124 VFGGSVFEGM-------RRQMAPGKIKADMAGDLTPRERDIMRLVARGMDNREIAGALFL 176

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  TV N I+ ++ K   K R+    +AV++N+
Sbjct: 177 AEGTVRNNISRLLEKLKLKDRTQLAVFAVKHNL 209


>gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 254

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    +   R++      G    +     +              +  + P D+    
Sbjct: 12  LQALHTLNACLDRVFRDVCAFGFKSLVYDYAPVPLSMEGALITPSVFMQRNAPGDMRHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   +                       GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRMTPFVWSYRTDGNQEGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVAR----IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                          +  +  +   +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|312195736|ref|YP_004015797.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227072|gb|ADP79927.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 4/204 (1%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 +    E VG +             +   ++      D      L +  +     
Sbjct: 15  AGVRAELGGRVEVVGEAATPAEAVAGIAASRPQVVLLDVHMPDGGGLAVLRQVGERLPDT 74

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           +        V     + I         Y + T     +   +  +     +        +
Sbjct: 75  RFL---VLSVSDAAEDVIALIRAGARGYVTKTISADELADAVERVAGGDVVFSPRLAGFV 131

Query: 163 GLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                  +N   +       DF +LT RE E L  ++ G    EIA  L IS  TV  + 
Sbjct: 132 LDAFRDASNAPPAAAAAPDADFDQLTPREREVLRLLARGYAYKEIAAELFISVKTVETHA 191

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           ++++RK    +R     +A    I
Sbjct: 192 SNVLRKLRLSSRHQLTRWAADRRI 215


>gi|300780243|ref|ZP_07090099.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300534353|gb|EFK55412.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   +D +  +  +           A  +  G    L+    
Sbjct: 2   IRVLLADDHEIVRLGLRAILEEADDIIVVGEVATAEGAI----ATAQAGGIDVILMDLRF 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q            +  R +  S ++        P  L    + T  + +       
Sbjct: 58  GAGAQGARVT----TGAEATREIRASMENP-------PKVLVVTNYDTDVDILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +       + +       +                       LT
Sbjct: 107 VGYLLKDAPPAELLAAVRSTAKGDQAMSPMVRDRLQT-------------RDRTPRSSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 PRELEVLQLVAGGSSNREIGQRLMLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGVL 212


>gi|225351362|ref|ZP_03742385.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157706|gb|EEG70989.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 220

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 70/227 (30%), Gaps = 20/227 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V   P     L+ ++    T        A T Y G +       D      +D  
Sbjct: 2   MRVAIVDDDPIVCSSLSTILKATGTADI-----AWTAYDGETAVGQYEEDNPDVLLIDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +  +  +           L    F                Y     DV
Sbjct: 57  MPVMDGLAASRKIIDAHPN--------AKILILTTFADESYIAEALEIGTKGYLIK-QDV 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVH-----WGKDFELTGREV 191
           + +   +  +     ++    L ++ +  A+           +      G+   LT RE 
Sbjct: 108 SSVIPAVQSVMAGQVVMGAQVLRKLHVNKASQTQRHVSQAGDNGENRFSGRFANLTERER 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + +  ++EG  + EIA  L +S  TV N I+ I+ KT    R+    
Sbjct: 168 DVMQLVAEGYDNREIAAKLFLSEGTVRNRISDILAKTNVTNRTKLAV 214


>gi|86361169|ref|YP_473056.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86285271|gb|ABC94329.1| transcriptional regulator (activator) protein, LuxR family
           [Rhizobium etli CFN 42]
          Length = 241

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L R+            +  +      SH +L           + ++   +P + V+    
Sbjct: 11  LDRISASPTLQDLETALDEVRHIYAISHMVLHVTRSSGATVSNPLLMLTYPPEWVKQYRD 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTL-----------PENITPPAGMDNRYCSLTFDVARIR 141
            +      V++     F PV  +             +                      R
Sbjct: 71  RDYFSIDPVVRLGRRGFLPVEWSASKWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGER 130

Query: 142 IGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
               +         R    D + ++  LA +  +     +          L+ RE++CL 
Sbjct: 131 SLFTVTSNHPDAYWRQFRMDCMRDLQFLAHHLHDRAMVLAGMREIADVAHLSRRELQCLE 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G  + +I+  L IS + V  Y+AS  RK    T S A+A A    ++
Sbjct: 191 MTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALELI 241


>gi|332521658|ref|ZP_08398111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042747|gb|EGI78947.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 208

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 20/191 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G + F  ++ +       +  +        +R +        Y  ++       P     
Sbjct: 36  GEAIFDFLKHNKVDVILCEIDLPKLNGITALRKIRKE-----YPDVRVIIFSTQP---EE 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y S T D+  I+  ++  +     +       +           +S 
Sbjct: 88  VYALNAIKLGAAGYLSKTTDIITIKDAIIKAYMGNTYLSEAMTKRL----------MQSK 137

Query: 177 DVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
               G+ F  +L+ RE+E L  ++ GK + EIA  L I+  TV+ Y A +M+K       
Sbjct: 138 KSSEGQSFFKKLSNREIEVLKLLTSGKRNKEIAQELDINEKTVSTYRARLMKKLNVTNLV 197

Query: 235 GAIAYAVRNNI 245
             +  A +  +
Sbjct: 198 DLVNQAKQLAL 208


>gi|296161929|ref|ZP_06844729.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295887805|gb|EFG67623.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 229

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 61/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       + H       +  +     +      +   T              
Sbjct: 15  IKVVIADDHPTVLGGLVHALEPVSTIQIVATCQNSTELIAALQKQT-------------- 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + S    D +       +        +   +   V  +        +   
Sbjct: 61  -CDVVISDYAMPSGEYGDGLVLFEYLRRHF-----PKVGIIALTVMDSPAVIRALISAGV 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               S +     I   +   +  G  +                    +     G    L+
Sbjct: 115 TSILSKSDATGHIITAIHSSYAGGSYLSPTI------------EQVVNNSETTGDQQPLS 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E     + G +  +IA  L  S+ TV+    + MRK         I YA+ + ++
Sbjct: 163 PRELEVARLFASGLSMTDIARRLNRSKQTVSTQKTTAMRKLGVANDVELIRYAIESGLI 221


>gi|104782747|ref|YP_609245.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111734|emb|CAK16458.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 69/238 (28%), Gaps = 29/238 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L +     A +   +        +  L                
Sbjct: 4   RLLLVDDHSLIRAGVRSLVSDIPGYAVIGEAEDGNQLLDHVLRL---------------N 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +  +              L   +       +       +
Sbjct: 49  PDIVLLDISMRSTSGLDALTQLRANGCT--------CKVLILSMHTDPDLIMRALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       + +   L  L    R +       +                       LT 
Sbjct: 101 GYLLKDTTGSELEQALTALRNDERYLSPAIAHTV------INQALIRAQSGNDYRQHLTA 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 155 RQLEILRLIVRGKSTREIAGGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFAVRERII 212


>gi|254255505|ref|ZP_04948821.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901242|gb|EAY71992.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 215

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 17/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +          E    AS   LVR        LD  +   
Sbjct: 1   MTKVLIADDHALVRDGLRHILQNARGFDVAGEARDSASTIALVRDTDADVLVLDLSMPGR 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L++ +   +       L         +       +       + Y +     A + 
Sbjct: 61  NGVELIKQIKDEK-----PALHIL---VLTMHAEQQYAVRAFRAGASGYMTKESASAELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +   G  +      +         ++             L+ RE +    ++ G+
Sbjct: 113 AALTKIAAGGVYVSLAMAEQFAQSLNEPTDLM--------PHQRLSDREFDVFRRVTSGQ 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 165 SISEIAQALCVSVKTVSTYKTRILEKMQMPNDTALVRYAMRHKL 208


>gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC
           superfamily [Corynebacterium pseudotuberculosis 1002]
          Length = 208

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 8/212 (3%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++  D         + + E       +    D  +  +  S +  D     +R   +
Sbjct: 1   MIRIVLADDQAMVRTGFHMILEAQPDMEVVYEASDGVEALEAISRLRPDVALLDIRMPRM 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +       V  +   +    F+      T        Y         +   +   +    
Sbjct: 61  NGLQVAEQVAPQLATVMVTTFNDDAYVDTTLEYGARGYLLKDAGPELLVEAIRSAYRGDV 120

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +I  + L  +           +S       D  LT RE+E    I+ G+T+ EIA  L I
Sbjct: 121 LISPEVLSLLL--------DRRSKPNTSSSDLPLTCRELEVARLIAYGRTNQEIATELFI 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           S +TV  ++A I  +   + R    A   R+ 
Sbjct: 173 SLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204


>gi|238787448|ref|ZP_04631246.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC
           33641]
 gi|238724235|gb|EEQ15877.1| hypothetical protein yfred0001_19670 [Yersinia frederiksenii ATCC
           33641]
          Length = 209

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   +    R   + +   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIKNMLMTYSRYQIVGQAENGLDVYNLCRQTEPDIVIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          +               Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPTMKIL---ALTARNEEHYASRTLNNGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I       +        N              LT RE + L  I+EG  
Sbjct: 115 AIQTVAVGKRYIDPALNNVL-------MNKLAQGTDTN--QAVLTPRERQVLKLITEGSC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRIIADQLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2]
 gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2]
          Length = 197

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 61/222 (27%), Gaps = 27/222 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D    +  L   +     M   T   G      +         +D  +      
Sbjct: 3   RLFIAEDQSMLLSALGSLLDLEEDMEQATN--GEEALTAILKLEPDVCLMDIEMPVKSGL 60

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++   +A            +   +    F              + Y     ++  +   +
Sbjct: 61  EVAEELAKQG--------AKTKIIILTTFARPGYFERAVKSNVHGYLLKDGEIDDLADAI 112

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R    +             N  +  +        LT RE + L     GKT+ 
Sbjct: 113 RKCTEGKRTFSPELT----------FNAVRETNP-------LTEREQDILRLAYIGKTTK 155

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI+  L +S  TV NYI+ IM+K   K R  A   A     +
Sbjct: 156 EISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 197


>gi|186474727|ref|YP_001863698.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184198686|gb|ACC76648.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 210

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++ T  +    E V G      +R  +     LD  +     
Sbjct: 3   RILIADDHAIVRGGLRQIIATTSDIIVAAEAVQGTEVIDRLRSCVVDLLLLDMTMPGISG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL+R + + +             L   +                 Y +   D   +   
Sbjct: 63  VDLIRRVRVEQ--------PSLPVLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L   GR I         L+        +           L+ RE + L  ++ G++ 
Sbjct: 115 IRKLTDGGRFIDP------KLVDGMIFETQRGDVPPHE---VLSDREFQVLQMLAAGRSI 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA    +S  T++ Y   +M+K      +  I YA+R+ ++
Sbjct: 166 NEIADACALSAKTISTYKTRLMQKLGFSNNAEVIRYAIRHGLI 208


>gi|119775008|ref|YP_927748.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767508|gb|ABM00079.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 215

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 29/238 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++VL  + E   + +  L    D +  +                    G     LVR   
Sbjct: 6   SVVLVDDHELVRAGIRTLLHTIDSIEVIGECGD---------------GLEAVALVRRLK 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   LD  + S    ++V+ ++                L   + + +           +
Sbjct: 51  PKLLVLDISIKSLSGMEVVKLISNQAIP--------VKILILSMHNNVEYVAKCLKNGAH 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y      V  +   +  +      I ++    +         +  +          LT 
Sbjct: 103 GYLLKDAAVDELEPAITNVLLGHSYISKEIDISL------LEQLLSTNQSAPSLLELLTN 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R+ + L  I+EG ++ +IA  + +S  TV  + A IM +      +G + +A++  ++
Sbjct: 157 RQKQILQLIAEGYSTRQIAESISVSIKTVETHRAHIMARLQIFDIAGLVRFALQEKLI 214


>gi|152997016|ref|YP_001341851.1| two component LuxR family transcriptional regulator [Marinomonas
           sp. MWYL1]
 gi|150837940|gb|ABR71916.1| two component transcriptional regulator, LuxR family [Marinomonas
           sp. MWYL1]
          Length = 217

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 29/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  +     S +                         +   +  + ++   L   +
Sbjct: 2   ISLVIADDHPLFRSALCGALR--------------AEIEGIVIVESHDLDSTLHCLANVN 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +             L    K +  +                         
Sbjct: 48  DLDLLLLDLNMPGS-----GDLYGLIRIRKDFPDVPVAVISG---SEDSAMVAKVIDAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T + A     +  +      +  D   E        A+  K       K  ELT
Sbjct: 100 LGFIPKTSEPATYVQAIHAILAGDIWLPDDLRQE-------VADQPKPDLSMQHKVTELT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ + L ++ EG  + +IA  L IS  TV  +I +I RK     R+ A+  A    +
Sbjct: 153 PQQYKVLCYLHEGLLNKQIAYELSISEATVKAHITAIFRKLEINNRTQAVLVASDLKL 210


>gi|297156704|gb|ADI06416.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 195

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 27/191 (14%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +            Q         +              
Sbjct: 2   APDVALMDLRMPRCDGVEATRRIRAEH-----PATQVVVVTT---YADDEWLFPALKAGA 53

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
             Y +   D   I   +  +      +       +  L    A+   + D   G      
Sbjct: 54  RGYVTKDADAEEIARAIEDVMSGQAGLSPKVQRRL--LERLVASTADTPDTADGTAAKTG 111

Query: 185 ----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE E LT ++EG ++ EIA  L I   TV  +I     K   + R+
Sbjct: 112 AGAVPGPLPDGLTPREAEVLTLVAEGLSNAEIARRLHIGPATVKTHI----AKAGVRDRA 167

Query: 235 GAIAYAVRNNI 245
            A+ YA R+ I
Sbjct: 168 QAVRYAYRSGI 178


>gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 212

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 22/218 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPF 84
           L    D    ++ +   + +      +T   G     +L +  +      D ++     +
Sbjct: 12  LLLIDDDPNLILLVKDYLEFRGY-EVITAENGREALEILEQSPVPDMIICDVMMPEMDGY 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             V  +    +  +   L    +          + I       + Y    F+   +   +
Sbjct: 71  TFVEKLRDDSRTSWIPFLFLSAKGQS------QDRIKGLRTGADVYMIKPFEPEELVAQV 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                +                           +    + ELT  E++ +  +++G  + 
Sbjct: 125 EACLSRVIPPS--------------MTSSSGPTIQVPSNVELTPTELKVIQLVAQGMANR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           EIA  L +S+ T+ +++++++ KT+   R+    +A+ 
Sbjct: 171 EIAEKLNVSQRTIESHVSNMLNKTSLHNRTELARWAIE 208


>gi|197123248|ref|YP_002135199.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220918037|ref|YP_002493341.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196173097|gb|ACG74070.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
 gi|219955891|gb|ACL66275.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 215

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 24/226 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGA----------SHFLLVRWDLFQEQKLDSIVSSD 81
           +  R I ++   + +  +  +    G               L R +      +D  +   
Sbjct: 1   MAIRAIAVEDDEAVSKLIAQVLTSHGFEVCGTAATGEDGVALARRERPDVALVDLGLPKM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +                 +           +       + Y    F  A + 
Sbjct: 61  SGEDVIATIRQELPKTAC--------IALTAVDIPARVLNAMRAGASGYILKPFHAADLT 112

Query: 142 IGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +  +       I       +              D        L+ RE+E L  +  G
Sbjct: 113 KAVEDVLSGEAAPISPRAAKVLLQEF-----RGDPPDQRAKDGPALSKRELEVLQLLVHG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T  ++A  LGI+  TV  Y+  I  K    T++ A   AV   +V
Sbjct: 168 HTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLV 213


>gi|118617914|ref|YP_906246.1| two component transcriptional regulatory protein DevR
           [Mycobacterium ulcerans Agy99]
 gi|183981531|ref|YP_001849822.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium marinum M]
 gi|118570024|gb|ABL04775.1| two component transcriptional regulatory protein DevR
           [Mycobacterium ulcerans Agy99]
 gi|183174857|gb|ACC39967.1| two-component transcriptional regulatory protein DevR
           [Mycobacterium marinum M]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L      L  +           R+ A                
Sbjct: 2   VTVFLVDDHEVVRRGLIDLLDADPQLDVVGEAGSVSEAMARIPAA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     +    +L          + +    +       
Sbjct: 47  NPDVAVLDVRLPDGDGIELCRDLLSRMPNLRCLIL--------TSYTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +        +  +           LT
Sbjct: 99  SGYVVKDIKGMELARAIKEVGAGRSLLDNRAAAAL-------MSRLRGVVERPDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  +SEG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A   
Sbjct: 152 DQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFAAEL 207


>gi|307729408|ref|YP_003906632.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307583943|gb|ADN57341.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 21/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R           D L  ++                     S   L+R        LD  +
Sbjct: 3   RVLVADDHALVRDGLRHILKSASGFEVVGEASDSA-----STVALIRTCAADVLVLDLSM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L++ +   +             L   +       +       + Y +     A
Sbjct: 58  PGRNGVELIKQIKDEK--------PALRILVLTMHAEQQYAVRAFKAGASGYLTKESASA 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G  +                ++             L+ RE + L  I+
Sbjct: 110 ELVSAVAKVAAGGVYVSLAMAERFAQSLNEPTDLL--------PHQRLSDREFDVLKRIA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 162 AGQTITEIATELCVSAKTVSTYKTRILEKMQMPHEAALVRYAMRHKLV 209


>gi|187920980|ref|YP_001890012.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719418|gb|ACD20641.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 67/225 (29%), Gaps = 17/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +          E     S   L+R        LD  +   
Sbjct: 1   MTRVLIADDHALVRDGLRHILQGASGFEVTGEANDSVSTVALIRERAADVLVLDLSMPGR 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L++ +   +             L   +       +       + Y +     A + 
Sbjct: 61  NGVELIKQIREEK--------PALRILVLTMHAEQQYAVRAFKAGASGYLTKESASAELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G  +                ++             L+ RE + L  I+ G+
Sbjct: 113 AAVTKVAAGGVYVSLTMAERFAQSLNEPTDLL--------PHQRLSDREFDVLKRIAAGQ 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 165 TITEIAAELCVSSKTVSTYKTRILEKMQMPHEAALVRYAMRHKLV 209


>gi|328885800|emb|CCA59039.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 197

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 11/195 (5%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           +    GA    ++R +      LD  +       ++R +    +  +             
Sbjct: 1   MATAEGAQATDVIRRERPDVVLLDIRMPDVDGLTVLRQIQTLPEPPH--------VAMLT 52

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            F T    +T      + +     +  ++   +  L   G ++       +         
Sbjct: 53  TFDTDEYILTALRSGASGFLLKDTEPEQLAQLVRTLAAGGVVMSPKASRAL---LRSHPG 109

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                D    +   L+ RE + L  ++EG ++ +I   + +S  TV ++++SI+ K    
Sbjct: 110 AGAPQDADVSRVGLLSDRERDVLVLVAEGLSNADIGTRIHLSAGTVKDHVSSILTKLRVS 169

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A   A R  ++
Sbjct: 170 SRVQAALLAERAGLL 184


>gi|256788073|ref|ZP_05526504.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 63/233 (27%), Gaps = 29/233 (12%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R    R             LA ++ ++  +    ++ A     G                
Sbjct: 19  RAHPVRVLLAEDQGMMRGALALLLGMEDDIEVVAQVSA-----GDEIVAAALTHRPDIAL 73

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      D    +                 L    F                +   
Sbjct: 74  LDIELPGLSGLDAAAELRERA--------PGCRVLILTTFGRPGYLRRAMEAGAAGFLVK 125

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              V  +   +  +     ++                    +          LT RE + 
Sbjct: 126 DGPVEELAGAIRRVLGGETVVDP----------------ALAAAALSAGPSPLTARECDV 169

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L   ++G T  +IA  L +S +TV NY+++ + KT T+ R+ A+  A     +
Sbjct: 170 LRASADGATVADIAGALHLSESTVRNYLSAAIGKTGTRNRAEALRAARGQGWL 222


>gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 213

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + L  ++ L   V            +      LV         +D  
Sbjct: 3   LRVVLADDQAVVREGLVTLLGLLPGVEVVGAAADGLAAL-----ALVAEHHPDVVLVDLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  + +                 +    +      +         + +   D 
Sbjct: 58  MPRCDGVEATKRIRA--------GHPGTEVVVLTTYADDESLLAALRAGARGFLTKDADA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   L         +  +    +           +S      +   LT RE+E L  I
Sbjct: 110 ESIARALRSAAAGQSTVDGELQRRL------VEAAARSAPPRVKEVEGLTARELEVLRLI 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G ++ EIA  L +S  TV  ++  +  K   + R+ A+A+A R  I
Sbjct: 164 AAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI 211


>gi|295394930|ref|ZP_06805143.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972263|gb|EFG48125.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 225

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 64/232 (27%), Gaps = 11/232 (4%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           ED   T  +  L    D L R        S T          G                L
Sbjct: 4   EDRTDTPPIRVLIADDDQLVRTGVAAILASATDLDITALASNGHEAVDAAATHRVDVALL 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +        +R +   +                  F                +   +
Sbjct: 64  DIQMPRLDGIGALREIRHRQ--------PELPIAMLTTFSDDHLIADAINAGALGFLLKS 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +  ++  G+  L   G             LA  Q    ++          LT R++E L
Sbjct: 116 DEPQQLIAGVRALAHGGGAFSPRVAR---WLATEQQAGHRTRTARDELTALLTERQIELL 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T I+ G ++ +I   + +S  TV  Y++ +        R  A   A R+ ++
Sbjct: 173 THIARGLSNAQIGRAMHLSEGTVKQYVSQLFNTLGIDNRVHAAITAYRHGLI 224


>gi|258516863|ref|YP_003193085.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780568|gb|ACV64462.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 216

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 67/222 (30%), Gaps = 19/222 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            + R           D +  ++     +             G      V         LD
Sbjct: 2   SKIRVVIADDQNLICDGIRIILDSQPDMEVVGIADN-----GQKAVEFVSACQPDVALLD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + ++ + ++          +   L    F      I       + Y     
Sbjct: 57  ISMPVMSGIEALKEIKVN--------YPKTVVLMLTTFDPDEYIIGAFRSGADGYLLKDM 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++ + +   F     +          +  +     K       +D+ LT RE+E   
Sbjct: 109 TAEKLVVAIRNAFNGNVTMPASIASR---IIVHIHEDVKKNS---LQDYGLTQREIEIAG 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++ G +++ I++ LGIS  TV NYI+ I  K    +R  AI
Sbjct: 163 LMARGFSNELISITLGISLGTVKNYISVIYSKLEANSRQEAI 204


>gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 224

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 80/225 (35%), Gaps = 11/225 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D     + +   +        +T   G     L+          D  +     + 
Sbjct: 5   ILIADDDPGVRLAVKDYLELYSY-SVITAKNGQEALSLLVAYRPHLLISDIKMPQKDGYT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +            +    +F     +  E I       + Y    F++  ++  + 
Sbjct: 64  LVRYIRQL------PEFRLLPVIFLTERDSTGERIQGYEVGCDVYLPKPFEMEELKAVVR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGK 201
            L  + ++I  +  +        Q N F        +        T REV+ L  ++ G 
Sbjct: 118 NLLERTQMIQSELGFSKRKSFGKQKNNFSQETEDKNQSLANYLHFTPREVQVLNLLTTGL 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I   L +S  TV  Y++S++RKT T  R+  + +A+ ++++
Sbjct: 178 SNGDIGQKLHLSPRTVEKYVSSLLRKTETNNRAELVRFALDHHLI 222


>gi|307326279|ref|ZP_07605475.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306887942|gb|EFN18932.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 224

 Score =  106 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 10/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G     L      Q   +D  +     
Sbjct: 7   EVVVADDQELVRAGFRMILDAQSGIEVVGEAADGVECVELASRLRPQVVLVDIRMPRLDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R +A         V +    +    F       T        +       A +   
Sbjct: 67  LEVTRQLAGPG------VAEPLNVVVITTFDQDNYVRTALRNGACGFLLKDATPALLVEA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G ++       +                   +   L+ RE++ +  I+ G+T+
Sbjct: 121 VHAAARGGALVSPAVTVRL---LKRLEQAELGAVSAGLEAVGLSARELDIVRLIAVGRTN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EI   L +S +TV  Y+  +  K A + R    A+A  + 
Sbjct: 178 QEICDELFLSLSTVKTYLGRVQSKIAARNRVEIAAWAWEHG 218


>gi|325124210|gb|ADY83733.1| response regulator GacA (global antibiotic and cyanide control
           protein, LuxR/UhpA family) [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 205

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 66/233 (28%), Gaps = 31/233 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            + E   + +  +      +  +   +                G     +VR    Q   
Sbjct: 2   DDHELVRTGICRMLEDHADVEVIGQAES---------------GEEAIAIVRQKHPQVVL 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      +  R +  +  D           +        P            Y + 
Sbjct: 47  LDVNMPGIGGVETTRRLLQTAPD--------TKVIAVSGLAEEPYPSLLLKAGAKGYITK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              +  +   +  +   G+    D       +A   A+ +   D        L+ RE++ 
Sbjct: 99  GAPITEMVRAINKVMQGGKYFSAD-------IAEQLASSYL-SDTQQSPFDSLSEREMQV 150

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +    ++ EIA  L +S  TVN Y   I  K A  +       A+R  ++
Sbjct: 151 AMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDVKLTHLAIRYGLI 203


>gi|255034530|ref|YP_003085151.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947286|gb|ACT91986.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 210

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 16/178 (8%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +  R +                 L    F              N
Sbjct: 49  PDLVLMDIDMPGLDGIEATRLVRKH--------FDALPVLIQTNFEEDDRIFGSLRAGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y        R    L      G  +       +            S +    KD+ LT 
Sbjct: 101 GYLLKKTSPERFLESLREALDGGAPMTGSIAARVL--------RHFSAESEAKKDYHLTE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L ++ +G +   IA    IS NTVNN+I +I  K    + + A++ A++  +V
Sbjct: 153 REKQILGFLVKGYSYKLIAAECTISYNTVNNHIRNIYDKLYVNSATEAVSLAIKERLV 210


>gi|302036834|ref|YP_003797156.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|190343248|gb|ACE75636.1| response regulator [Candidatus Nitrospira defluvii]
 gi|300604898|emb|CBK41231.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       V  + +     A +                         L V   
Sbjct: 2   TRILVVDDHAVVRQGVKQILSEQFHGAVLGDAQNAEEM---------------ILQVGKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      D ++ +  +          +   L    +      +       
Sbjct: 47  SWDIVILDVGMPGKSGLDALKELKQAR--------PKLPVLVLSGYPEDQLALRMLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   L  +   G+ +       + L            D       +L+
Sbjct: 99  AGYLSKDSAPNELVQALRKILGGGKFVSAAVAELLALNL--------ESDGEKPLHEQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  I+ GK+  +IA  L +  +T+N Y A I+ K   K  +    YA+ N +V
Sbjct: 151 DREYQVMCLIAVGKSLKDIADDLCVGVSTINTYRARILEKMQLKNNTELTHYAIENRLV 209


>gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia
           ubonensis Bu]
          Length = 222

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 78/218 (35%), Gaps = 16/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  +  +      + AL +   A  F     D        +    +WP  ++  +    
Sbjct: 13  RVAVVAASPQMRASLQALVDAAPALDFAGSAADAAALADRLAG---EWPDVVLVELEPQA 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENIT------PPAGMDNRYCSLTFDVARIRIGLMLLF 148
            D    V         P    L ++          AG              I   +  + 
Sbjct: 70  GDW--PVPGADRHPAMPALVLLTDDADSDWIHDALAGGATALLPRGATPGEITAAIEAVA 127

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  + L  +  LA ++A    +          LT RE+E LT ++EG  + EIA 
Sbjct: 128 AGLCVLSPEILARL--LAEHKAPRQTASAALVE---MLTPREIEVLTMLAEGLGNKEIAR 182

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS NTV  +++SI  K    +R+ A+   +R+ +V
Sbjct: 183 QLDISDNTVKFHLSSIFGKLGASSRTEAVMQGMRHGLV 220


>gi|167566181|ref|ZP_02359097.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 205

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 15/188 (7%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A    L   D      +D ++  D P   +  +  +  D           +      +  
Sbjct: 25  AEASDLCGRDRPDLVLMDVMLPGDDPLPAMGEILRTYPDM--------RFVVFTALGSEA 76

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                     + Y         I   +  +      I          L   +        
Sbjct: 77  RAADAIRFGASGYLLKWCSPDGIVQAVRRVMAGRVHIDPS-------LDEARVASAAGGR 129

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT RE + L  I +G  + EIA +L IS+ TV+ +   +M+K   +  +  I
Sbjct: 130 TLASPVDKLTRREKQILKLIVDGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVI 189

Query: 238 AYAVRNNI 245
            +A R   
Sbjct: 190 HWAYRYGY 197


>gi|156743691|ref|YP_001433820.1| two component LuxR family transcriptional regulator [Roseiflexus
           castenholzii DSM 13941]
 gi|156235019|gb|ABU59802.1| two component transcriptional regulator, LuxR family [Roseiflexus
           castenholzii DSM 13941]
          Length = 221

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 33/244 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    + + +VL  + E     +  L  R   +  +       S    +           
Sbjct: 1   MTDLNRAIRVVLADDHELVLEGLRGLLERESDMIVVATATDGESLLAIIER--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +      +D  + +      +R +                 +    F       
Sbjct: 52  ------ERPDVVVMDLAMPTRDGLSCLREIRRRGMP--------VKVVILTAFGDGGALQ 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +      + +   T    +    +  +     +  R          A+  ++        
Sbjct: 98  SAWEMQADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQAADATQAHGQSLLAR----- 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  ++EG  + +IA  L +  +TV  ++ +I +K     R+ A    
Sbjct: 153 -----LTQRERDVLRLLAEGMPNAQIAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVY 207

Query: 241 VRNN 244
            R  
Sbjct: 208 YREG 211


>gi|66045180|ref|YP_235021.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255887|gb|AAY36983.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 222

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPGLKVVIFTMDDSTDHLEAAMSAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIDGLQRVARGEEALNSAVSARL------LRRMTERNTSGAALPETLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|295701248|ref|YP_003610249.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295441571|gb|ADG20738.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++ T  +  + E   G+     +R        LD  +     
Sbjct: 3   RILIADDHAIVRGGLRQIIATTSDIVVVAEAAQGSEVIDGLRSRAVDLLLLDMTMPGISG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+R +                 L   +                 Y +   D   +   
Sbjct: 63  IVLIRRVRAEH--------PSLPVLVLSIHDEAQVASRALRAGATGYLTKDSDPEVLLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L   GR +    +  +          F +          L+ RE + L  ++ G++ 
Sbjct: 115 IRKLAEGGRFLDPKLVDALV---------FDTQRDDVPPHKVLSDREFQVLQMLAAGRSI 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA    +S  T++ +   +MRK      +  I YA+R+ ++
Sbjct: 166 NEIAETCTLSAKTISTHKMRLMRKLGLSNNAELIRYAIRHGLI 208


>gi|269954998|ref|YP_003324787.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303679|gb|ACZ29229.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 219

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 65/240 (27%), Gaps = 30/240 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V + L  + E     V+ L      L  +          +R+ AL            
Sbjct: 4   MDPVRVFLVDDHEVVRRGVADLLEAESDLEVVGEAGTAAEALVRVPALA----------- 52

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +       + R +  +              L    F           
Sbjct: 53  ----PDVVVLDVRLPDGDGVAVCRELRATTDVAC---------LMLTSFDDDEALFDAII 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +   G ++       +       A M            
Sbjct: 100 AGAAGYVLKQVRGTDLVHAIRTVAAGGSMLDPHAAERV------MARMRAQARHDDDPLA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E   L+ I +G T+ +I   L ++  TV NY+++++ K   + R      A +  
Sbjct: 154 SLTPQEQRILSLIGQGMTNRQIGAELFLAEKTVKNYVSNLLAKLGMERRVQVAVLATKLG 213


>gi|242239902|ref|YP_002988083.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242131959|gb|ACS86261.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech703]
          Length = 211

 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  +     S  + L +    +  +          + +  L               
Sbjct: 4   INVALIDDHIVVRSGFAQLLSLEGDIQVVGQYASAADAGVSLLKL--------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +    L+  +                 +   ++ T     +      
Sbjct: 49  NVDVAVMDIAMPDESGLSLLARLRQKRPTF--------RAIILSIYDTAAFVQSALDAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +   G  +  D +  +           +           LT
Sbjct: 101 CGYLTKRCGPEELVQAVRAVHAGGSYLCADAMRAL-----------RHSRQRPKALEALT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +  G +   IA  L +S  TV+ + A+++ K    T    + +A+++ ++
Sbjct: 150 PREREIFDLLVNGLSVKTIAEQLDLSHKTVHVHRANVLDKLHCATTVELVHFALQHQLL 208


>gi|285018517|ref|YP_003376228.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283473735|emb|CBA16238.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 236

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 19/227 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R    +      + +A ++     +             G     LV         +D ++
Sbjct: 4   RIVIAAERSIVLEGIAALLKNTPDIDVVGHA-----VDGLECVQLVTKRHPDIVLMDVML 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +                 +      T              Y +      
Sbjct: 59  PGLNGIEATRRLLQRS--------PHSKAICIAASDTAANVRAVIDAGAKGYLARNSTFR 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      I       +       +               LT RE E +  +S
Sbjct: 111 ELLRAIQQVSKDQLYISPALSQSL------VSEYRCPPGDAASAYTLLTSREREVVQLLS 164

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG ++ +IA  L IS  T+  +   IM K   ++ +    YA+R  +
Sbjct: 165 EGLSTKDIAARLHISVKTIGTHREHIMLKLGMQSIAQLTRYAIREGL 211


>gi|282900664|ref|ZP_06308606.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194464|gb|EFA69419.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 81/208 (38%), Gaps = 18/208 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
            LT   G +   +++ +       D I+     ++LVR +  + + +   V+        
Sbjct: 29  VLTADDGENALSIIQQEHLDLMVTDIIMPRMNGYELVRRVRQNIEFRLLPVILLTART-- 86

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                  E I       + Y    F++  +   +  L  + +II  +      +   +  
Sbjct: 87  ----KTQERILGYQSGCDLYLPKPFELEELSAAVRNLLERSQIIQSEYCLSSQISGGFPP 142

Query: 171 NMF-KSYDVHWGKDFEL-----------TGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +   +       +   L           + RE E L  ++ G ++ EI   L +S  TV 
Sbjct: 143 DDKTRPVSPSIPRTETLNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYLSPRTVE 202

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y++S++RKT++  R+  + +A+++ IV
Sbjct: 203 KYVSSLLRKTSSNNRAELVRFAIKHGIV 230


>gi|251791073|ref|YP_003005794.1| DNA-binding transcriptional activator UhpA [Dickeya zeae Ech1591]
 gi|247539694|gb|ACT08315.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 196

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G    + +     Q    D  
Sbjct: 2   ITLALIDDHLIVRSGFAQLLGLEPDMQIVGEFGS-----GRDALVGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+             + +    +   V  +              + S     
Sbjct: 57  MPDCSGLELL-----------CQLPKGMAVIMLSVHDSPALIEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                   +   LT RE +    +
Sbjct: 106 DELIAAVRTVAGGGCYLTPDIALKLA----------------SSRRDPLTRRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G     IA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKAIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
 gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens
           AM1]
          Length = 265

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 81/255 (31%), Gaps = 41/255 (16%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D LA +     +      + A     G   F  +             + +          
Sbjct: 11  DGLAAIDAAKTSADLPGILQATASKAGFDSFAFLDGRAETSVGGR--IITTVAPAWQETY 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLP---------------ENITPPAGMDNRYCSLTF 135
           A      +   ++R  E   P F +                        G  +       
Sbjct: 69  ARENLAAHDPCVRRVAESNSPFFWSDIVLPEDDRRPDLTRMTMTAARDMGYYDGLVMPLH 128

Query: 136 DVA----RIRIGLMLLFPKGR-----IILRDRLWEIGLLAAYQANMFKSYDVHW------ 180
                  R+   L L +  G      +I       + +LAA  A                
Sbjct: 129 MADANGVRMLSSLSLFWADGSEDVRRVIGPRGPAVVKMLAAAWAQKLSDLGEAEAKPVQS 188

Query: 181 ---------GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    G+  +LT REV+ L+W ++GKT+DE +VIL + R TV+ ++++  RK    
Sbjct: 189 PAKVLTGLFGRPPKLTSREVDVLSWAAKGKTADETSVILALGRETVHTHLSNACRKLQAS 248

Query: 232 TRSGAIAYAVRNNIV 246
            ++ A+A AV   ++
Sbjct: 249 NKTHAVAMAVHRRLI 263


>gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 255

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+   D   + +     +   +G   F L+R     ++   SI+ + +P D V  +   +
Sbjct: 18  RIDSADSLCALSHLTEEMCLSLGFPWFTLIRGKQLAKRDDRSILLTSYPQDWVDHVLKEK 77

Query: 95  KDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIR 141
           +     V    + L   +                         G++  +           
Sbjct: 78  RHLDDPVHFAASRLVNGLSWNEIGQYVTLNSRQIETLESARRHGLNTGFTIPLRLDGFEN 137

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANM---FKSYDVHWGKDFELTGREVECLTWIS 198
               +   K  +I  +      L+ +          + D        L+ R+V+C+  ++
Sbjct: 138 AMFSMAKRKANVITSEERLLACLVGSVTFARAHALVTADAGIFTPVHLSPRQVDCVALLA 197

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G +  EIA  LGIS  TV  YI    R    K R      AVR+  +
Sbjct: 198 KGYSDFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDGYL 245


>gi|209548992|ref|YP_002280909.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534748|gb|ACI54683.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 206

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 33/239 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I +  +       V+   +     A +     +                   ++ 
Sbjct: 1   MTSITIGVVDDHPLFREGVTRSLSEISDFAVVGEGASSDDAA---------------MIA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD  +            A+S+        +        V   +   +    
Sbjct: 46  ANNHPDIMLLDVSMPGG------GLSAISDVLTRSPATKVLM---LTVSEEVDTLMAALQ 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +    R I      ++         M  S +    +  
Sbjct: 97  RGAMGYVLKGVGSRGLAEAIQTVLSGSRYISPTMSTKV---------MENSLNGGATEKN 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A     ++
Sbjct: 148 GLTPREREVMDLVAQGLSNKHIGLRLSLQEKTVKHHMTQILSKLGVSNRTEAALQWRQH 206


>gi|154687453|ref|YP_001422614.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353304|gb|ABS75383.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 215

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +I  D        M  +               G       + +      LD  +      
Sbjct: 5   VIIADDNSFIREGMKIILHTYEEFTVSATLENGLEAAEYCKHNSVDIALLDVRMPVMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +A         ++          F      +         Y     +  RIR  +
Sbjct: 65  EAAKRIAEE--TDTKPMI-------LTTFDDDEYILEAIKNGAKGYLLKNTEPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +F    I+    L +I    +  A      D     + + T RE+  ++ I++G ++ 
Sbjct: 116 KSVFNGHSILQDTVLDKIKDSLSRPAEAAHQID-----ESQFTERELSIMSLIAKGFSNR 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T  NYI+SI+ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTTANYISSILGKTGLEHRTQIAIY 205


>gi|254524890|ref|ZP_05136945.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Stenotrophomonas sp. SKA14]
 gi|219722481|gb|EED41006.1| response regulator (Global antibiotic and cyanide control protein,
           LuxR/UhpA family) [Stenotrophomonas sp. SKA14]
          Length = 215

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + +    +  +   +        +  L               
Sbjct: 3   IRVYLVDDHALVRTGMKMILSGETDIEVVGEAETGEDALREVRQLL-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +  S ++    ++    +   P                
Sbjct: 49  -PDVVLCDLHLPGVSGMEVTERIVRSHRNTRVVIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +  +    R +       + L          + + +      L+
Sbjct: 100 AGYIGKGCDAQELLRAVRDVAAGRRYLGTSISQNLAL---------STVEGNGSPFDSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G   ++IA  L +S  TVN + A +  K            A +  +V
Sbjct: 151 PRELEVALLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLV 209


>gi|153208911|ref|ZP_01947130.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218476|ref|YP_002305263.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120575632|gb|EAX32256.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012738|gb|ACJ20118.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 217

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     +   +     +  + E   G     L R        LD  +      
Sbjct: 4   VLLIEDHVLIRRGMRLMLEQIKGIRIVGEASTGEEGLALRREKEPGVVILDFQLPDTNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                       +    ++                +         + + + D A +   +
Sbjct: 64  -----ELARRLLRRDPEIKILVVTAM---EGELLPMRLLEVGVRGFITKSSDSAELERAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I       + L                    +L+ R++E L  +++G  ++
Sbjct: 116 RAVHSGQRYIGSAIASRLAL---------SKTTAAKSPFDQLSNRQIEVLLLLAKGMNAE 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L I+  TVN++   +  K   K     I  AV+  ++
Sbjct: 167 SIAKQLHITAKTVNSHRYRMFEKLGVKNDVELIKLAVQYGLI 208


>gi|148657384|ref|YP_001277589.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148569494|gb|ABQ91639.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 67/244 (27%), Gaps = 33/244 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    + + +VL  + E     +  L  R + +  +       S    + +         
Sbjct: 1   MTDLNRPIRVVLADDHELVLEGLRGLLERENDMTVVATATDGESLLALIES--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +      +D  + +      +R +                 +    F       
Sbjct: 52  ------ERPDVVVMDLAMPTRDGLSCLREIRRRGMP--------VKIVILTAFGDGGALQ 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +      + +   T    +    +  +     +  R              ++        
Sbjct: 98  SAWELQADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQAADPSQTQHTSLLAR----- 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  ++EG  + +IA  L +  +TV  ++ +I +K     R+ A    
Sbjct: 153 -----LTQRERDVLRLLAEGMPNAQIAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVY 207

Query: 241 VRNN 244
            R  
Sbjct: 208 YREG 211


>gi|74318804|ref|YP_316544.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058299|gb|AAZ98739.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 210

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 35/236 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +NI+L  +       V+    +   L               M                 
Sbjct: 4   PLNIILIDDHPLLRMGVAGYIQQEPDLELTAQFANAAELRAWM--------------AAG 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      LD  +      DLV  +                 +   +  +  E     A  
Sbjct: 50  NRADAALLDRSLPDADGLDLVSDLRDLGI----------KVIMLTIADSDEEISEAIASG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   + +  ++   +  +         + +                 +++      L
Sbjct: 100 VDGYVVKSSEPDQVLAAIRSVCDGQSSFPLNIM-----------QKMARGELNNSALSAL 148

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T RE+E +  + EG ++  IA  + +S NTV N++ +IM K   + R      A++
Sbjct: 149 TAREMEIVDHVKEGLSNKAIAYKMTLSENTVRNHLRNIMEKLGLRNRVQVATLALK 204


>gi|269125895|ref|YP_003299265.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310853|gb|ACY97227.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 218

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 76/241 (31%), Gaps = 26/241 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V +VL  + E   + +  +        R+I    T                    LV
Sbjct: 2   VPPVRVVLVDDHEMILAGLQAMLAGFSGRVRVIGQASTSR--------------EAVRLV 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  + ++   DL R +     D           +F  V+           
Sbjct: 48  TALQPDVVLLDVRLGAESGLDLCRDLTGRSPD--------TRVVFLSVYDDEQYVFEALR 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     D   +   L  +     ++       +   A          +   G   
Sbjct: 100 AGARGYLLKRVDGLELVRRLEEVAQGETVVDPTLAGRMAASA----ARLNRGEFWPGAHR 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L+ +  G ++  +A  L +S  T+ +++ ++ RK     RSGAIA A+R  
Sbjct: 156 GLTQRESEVLSLLVAGLSNKAMAARLVVSEETIKSHLRALYRKLEVTDRSGAIAVALREG 215

Query: 245 I 245
           +
Sbjct: 216 L 216


>gi|145224429|ref|YP_001135107.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|145216915|gb|ABP46319.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
          Length = 216

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L      L  +           R+                  
Sbjct: 2   VKVFLVDDHEVVRRGLIDLLGSDPELDVVGEAGSVSEALTRVPTA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRELLSLMPDLRC--------LMLTSFTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +           +           LT
Sbjct: 99  SGYVVKDIKGMELARAIKEVGSGRSLLDNRAAAAL-------MAKLRGEGERTDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +
Sbjct: 152 DQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVF 203


>gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 10/218 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D           ++    +  +   VGA     VR +      LD  +       ++ 
Sbjct: 3   VDDEALVRSGFRLILNAAPDIDVVATAVGAEAVDTVRREAPDVVLLDIRMPDVDGLTVLA 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +          V+          F      +T        +     +  ++   +  L 
Sbjct: 63  QLCAL---PDPPVVA-----MLTTFDADEYILTALRSGAAGFLLKDTEPDQLAQVVRTLA 114

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G ++       +    ++        D H  +   LT RE + L  ++EG ++ EI  
Sbjct: 115 AGGVVMSPKASRAVWQ--SHPRAATVDDDEHVARFGLLTERERQVLVLVAEGLSNAEIGT 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +S  TV +++++I+ K     R  A   A R  ++
Sbjct: 173 VVHLSEGTVKDHVSAILGKLGVAGRVRAALLAQRAGLL 210


>gi|290962906|ref|YP_003494088.1| response regulator [Streptomyces scabiei 87.22]
 gi|260652432|emb|CBG75565.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 219

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 67/229 (29%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
                 + +    D       +   +     +  + E   G       R        LD 
Sbjct: 1   MTRPSPARILLADDHALVRQGVRLILDAQPDLTVVAEAADGVEAVARAREGDIDLAVLDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R MA    +           L   ++              + Y   +  
Sbjct: 61  AMPHRTGLQAARDMARLRPEP--------RTLMLTMYDNEQYFFEALKAGASGYVPKSVA 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +             I      E  L+  Y  +  ++ D    +    T RE E L  
Sbjct: 113 DRDLVEACRAALRDEPFIYPG--TETTLIRTYL-DRARAGDRLPERPI--TEREEEILKL 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++EG +S EIA +L IS  TV  + A+++ K   + R     YA+R  +
Sbjct: 168 VAEGHSSREIARLLVISVKTVERHRANLLHKLGLRDRLDLTRYAIRTGL 216


>gi|239942277|ref|ZP_04694214.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988743|ref|ZP_04709407.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445736|ref|ZP_06585126.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291348683|gb|EFE75587.1| response regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 63/231 (27%), Gaps = 28/231 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  ++  +  +       +     G    +L          +D 
Sbjct: 10  PVRILLCDDHVVVRAGLLALLGSEPDIEVVGEAGS-----GEEAVVLAARLKPDVVLMDL 64

Query: 77  IV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +       +  R +A                L    + T  +           Y     
Sbjct: 65  QLGEGIDGVEATRRIAADGTVH---------VLVLTTYDTDADITRAIEAGATGYLLKAE 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +         +          +A+      +S          LT RE + L 
Sbjct: 116 RPEELFAAIRSAAQGRTTLS-------APVASRVMARMRSPRPS------LTDRERDILA 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S+G  + +IA  L IS  TV  ++  I  K    TR+GA++ A    ++
Sbjct: 163 QLSQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213


>gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 290

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 73/240 (30%), Gaps = 26/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ I++  + E     + H+  + +    +I           + +  +           
Sbjct: 70  DEMKILIADDHELFRDGLRHVLDQFEGPPTIIEACDFPQAIAAVQSEKD----------- 118

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +          ++                 +     
Sbjct: 119 ---IDIVLLDLTMPGMAWTEGLAKLKELLPSTVPLIV-------LSASDDRRHVLQAVNM 168

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   T     +   L L+   G  +    L + G      A +     +       
Sbjct: 169 GAAGFIPKTSSSRVMLSALKLVLSGGVYLPPALLEQGGPGGDDGAPVAGESAIAS----- 223

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L  + +GK++ EIA +L ++  TV  ++ +I++      R+ A+  A    +
Sbjct: 224 LTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAASHLGL 283


>gi|260655833|ref|ZP_05861302.1| response regulator GacA [Jonquetella anthropi E3_33 E1]
 gi|260629449|gb|EEX47643.1| response regulator GacA [Jonquetella anthropi E3_33 E1]
          Length = 217

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 12/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  L    +    +  +     G S   +VR        LD  + S   
Sbjct: 3   RLVLIDDHRMFIAGLMEIFASRPDLQVVGSAPDGESGLAVVREQRPDVAVLDMTMPSIGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  S              L   + + L             Y         +   
Sbjct: 63  VECARRLVES--------FPETKILALSMHNDLRFISELLRIGAKGYLLKDCATDELLTA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +       + LL      + ++      +   L+ RE   L  +++G TS
Sbjct: 115 VRTVAEGRLYLAGGV---VQLLVEDYLRLKRAVHDGPARSMVLSEREKSVLALMAQGLTS 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   LGIS+NTV+ +   +M K    + +  + +A R  ++
Sbjct: 172 KAIGDELGISKNTVDTHRRRMMDKLGCNSVAELLRHAYREELL 214


>gi|170692899|ref|ZP_02884061.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170142555|gb|EDT10721.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 240

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 68/252 (26%), Gaps = 39/252 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +++  +       +  L  +    +             R   L            
Sbjct: 1   MTAIRLLVVDDHTLFRRGLIALLGQDARFSVAGEAADAGEAQRRASEL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      D +  +                 L   V     +      
Sbjct: 49  ---QPDVILLDNHLPGVNGVDALNDLRE--------AAPHARILMLTVSEDERDLGAALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM------------ 172
                Y   T D   +   ++       ++  +   ++       AN             
Sbjct: 98  AGARGYLLKTVDAEALADSIVRTMRDESVVSPEMTGKLVQAYRAMANAGEGDASSIADDD 157

Query: 173 ----FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                         +  L+ RE E LT+I+ G ++ EIA  L IS  TV  ++  I+RK 
Sbjct: 158 PATLKPEAQHGSEPEPALSIREQEILTYIARGASNKEIARALAISETTVKIHVQHILRKL 217

Query: 229 ATKTRSGAIAYA 240
              +R  A  YA
Sbjct: 218 KLTSRVQAAVYA 229


>gi|282861134|ref|ZP_06270199.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563792|gb|EFB69329.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 215

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 60/229 (26%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++     +             G +   L R        +D  
Sbjct: 3   IRVLVAEDQSAVRAGLALILGSAPDIEVVGEA-----ADGEAAVRLARELRPDVVLMDVQ 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F                +     + 
Sbjct: 58  MPRLDGVSATRQVVAERLAD---------VLVLTTFDLDAYVFGALRAGAAGFLLKNTEA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
             +   +  +     +I       +  +A +                + LT RE E L  
Sbjct: 109 HDLLDAVRTVAGGEGMIAPAVTRRL--IAEFAGATAARDGAPDPAVLDALTRREREVLGC 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +G ++ EIA  L ++  TV  +++ ++ K   ++R  A   A    +
Sbjct: 167 LGQGLSNAEIAGRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGL 215


>gi|255038247|ref|YP_003088868.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254951003|gb|ACT95703.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 205

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 65/239 (27%), Gaps = 36/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  +       +  L   ++ +  +      +     +                 +
Sbjct: 3   VRILIVDDHPLVLEGLKSLLADAEGVQVVGTATNAIEAIAFLK---------------GN 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL + +                 L    F+             
Sbjct: 48  EVDIAFLDINLPDISGIDLCKKVKDQ--------FPEVKTLALSTFNERAYVSRMIQNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   +     I   +  +   G  +                    +          LT
Sbjct: 100 SGYLIKSSGKEDILEAIAQVQAGGYFMN-------------VQFDQVTPATAPKTVPFLT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+EG T+ +IA  L IS  TVN++  +++ K      +  I  A    ++
Sbjct: 147 RREKEVLVLIAEGLTNPQIAEQLFISVTTVNSHRQNLLIKFEVSNTASLIKLAAGLGLI 205


>gi|229821513|ref|YP_002883039.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567426|gb|ACQ81277.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 232

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D L     +  ++   +R+    E V      LVR        LD  +      
Sbjct: 21  DVVLVDDHLMFRTGVRASLDERVRIVGEAETVD-EAIALVRSLRPPVVLLDVHLPGGDGG 79

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                     +            L   V     + +         Y + +     +   +
Sbjct: 80  GGAEVARACAELAPD-----VRFLALSVSDAAEDVVAVIRAGARGYVTKSITGTDLSDAV 134

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +     +        +            + D       +LT RE E +  I+ G T  
Sbjct: 135 VRVAGGDAVFSPRLAGFVLDAFGAIGGDVATGDELD----KLTAREREVMRLIARGYTYR 190

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  L IS  TV  ++++++RK    +R     +A +  ++
Sbjct: 191 EVASELFISIKTVETHVSAVLRKLQLSSRHELTRWAAQRRLL 232


>gi|227497679|ref|ZP_03927892.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832874|gb|EEH65257.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 211

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 59/223 (26%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + +   G      VR        LD  +     
Sbjct: 9   QLLVADDQALVRGALATLLGLERDLEVVAQVGTGRQTVERVRSGGVDVALLDIEMPDGDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A                +    F              + +       A +   
Sbjct: 69  LWAAEQIARLRSAGTTP----CRSIIVTTFGRPGYLSRAIEVGASGFLVKDTPPAELAEA 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I      E  LL                    LT RE E L    +G  +
Sbjct: 125 VRKVHAGLRVIDPMLAQESVLLG----------------PNPLTEREREVLRLAGKGLDA 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +   TV NY++S + KT ++ R  A   A  N  +
Sbjct: 169 PHIAAHLSLGEGTVRNYLSSAIAKTGSRNRVEAARTAESNGWL 211


>gi|226312417|ref|YP_002772311.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095365|dbj|BAH43807.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 18/221 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV------GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        +  L E        G SH          + K D ++      + 
Sbjct: 1   MIRVLLVDDHTMIRKGLRVLLESYSQIKIVGESHTGNDAILKANQLKPDVVLMDLSLPNG 60

Query: 87  VRCM-ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A  E  K   +++        +               + Y         +   ++
Sbjct: 61  LDGFTASKEIRKSNPLVKIV---ILTMHDEEIFVQEAITVGAHGYILKNSHGELLFQAIV 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++            EI  +  +  +  K+          LT RE E +  I  G ++ E
Sbjct: 118 EVYRGKCFYKTSVSQEI--INLWLRSDAKTLPSV------LTLREKELVRLIVLGYSNKE 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +A  L IS  TV N+  +IM+K    ++   I YA++N  +
Sbjct: 170 MADKLLISVKTVENHKTNIMQKLGLDSKHQLIQYAIKNRYL 210


>gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 216

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D    ++ +   + +       T   G     ++   +      D ++     +
Sbjct: 11  RLLLIDDDPNLILLVKDYLEFQGY-EVTTAENGREALEILANQVPDMIICDVMMPEMDGY 69

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             V  +    +  +  V+    +          + +       + Y    F+   +   +
Sbjct: 70  AFVEKVRQDRRLSWIPVMFLSAKGQS------QDRVKGLNTGADVYMVKPFEPEELAAQV 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                + R ++  +       A                + ELT  E++ +  +++G ++ 
Sbjct: 124 ESSLSQARRLMEHKAGISLDEAHKI---------QVPSNVELTPTELKVIQLVAQGLSNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S+ T+ +++++++ KT+   R+    +A+ +N+
Sbjct: 175 EIASKLNVSQRTIESHVSNMLNKTSLHNRTELARWAMESNM 215


>gi|120600280|ref|YP_964854.1| two component LuxR family transcriptional regulator [Shewanella sp.
           W3-18-1]
 gi|146291788|ref|YP_001182212.1| two component LuxR family transcriptional regulator [Shewanella
           putrefaciens CN-32]
 gi|120560373|gb|ABM26300.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|145563478|gb|ABP74413.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
 gi|319425025|gb|ADV53099.1| two component transcriptional regulator for nitrate/nitrite
           response, NarP [Shewanella putrefaciens 200]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 63/218 (28%), Gaps = 21/218 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P     + ++I  D   S            G      V  D      LD  +   
Sbjct: 9   VVDDHPLLRKGICQLITSDPDFSLFGEAGG-----GLDALSAVATDEPDIILLDLNMKGM 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  M                 +   V     + I       + Y     +   + 
Sbjct: 64  TGLDTLNAMRQEGVT--------SRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLL 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L       R+I  +                K+          LT RE++ L  ++EG 
Sbjct: 116 EKLKNAMLGHRVISEEI--------EEYLYELKNVADEQEWISSLTPRELQILQQLAEGL 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 168 SNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|70730924|ref|YP_260665.1| response regulator GacA [Pseudomonas fluorescens Pf-5]
 gi|3142729|gb|AAD03502.1| response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345223|gb|AAY92829.1| response regulator GacA [Pseudomonas fluorescens Pf-5]
          Length = 213

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    L  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLLKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++   +                   L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQ--------PSSDSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 241

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 69/226 (30%), Gaps = 15/226 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  +    +    ++ L + +G +H                 V +  P   +    L   
Sbjct: 14  VETVRSAKNIEEAIFLLRDGLGLAHVSFHLNVSGAAPLDYPYVRTTLPSQWISRYVLRTY 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFDVARIRIGLM 145
             +  V++       P      E          +          Y   T D    R  L 
Sbjct: 74  VGHDPVMREGFSSLRPFSWHELEMSEKEREFMEDARSHGIGAQGYSIPTVDRFSRRSLLS 133

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQAN-----MFKSYDVHWGKDFELTGREVECLTWISEG 200
           L       +    +          +            +       L  RE ECL W + G
Sbjct: 134 LTADLDLGLWAGFIRRHASSVIEISQVLHQKALNELGIGEPSGATLAPRERECLLWTARG 193

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K S +IA IL +S  TV +Y+ +  +K   +T S A+A A R  I+
Sbjct: 194 KDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRII 239


>gi|331694595|ref|YP_004330834.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|331696119|ref|YP_004332358.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949284|gb|AEA22981.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950808|gb|AEA24505.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E     ++ L    D +  +           R+ A+               
Sbjct: 3   ISVFLLDDHEIVRRGIAQLLETEDDIQIVGEAATAAQALARIPAV--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       + R +              P  L    F              
Sbjct: 48  RPDVAILDVRLPDGEGVAVCRDV-------RSATSPPPACLMLTSFSDDEALFGAIMAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-EL 186
           + Y         +   +  +   G ++                   +  +      +  L
Sbjct: 101 SGYLLKQVAGTDLIGAVRTVAAGGSLLDPKATAS-------VLERLRRGEDTEDPRYAGL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + +E   L  +++G T+ +I   L ++  TV NY++S++ K     R+ A  YA R 
Sbjct: 154 SPQERRILDLVADGLTNKQIGAELFLAEKTVKNYVSSLLHKLGFSRRTEAAVYAERR 210


>gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 204

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 25/224 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L   +  +  +       A       +   +   D      LD  +   
Sbjct: 5   IADDHALLRDTLVLFLESESDIQ-----TATASTYDEAVERIKSDDSHDLILLDYNMPGM 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D ++      + +                 T            + +   +     + 
Sbjct: 60  NGLDGLKSALTIGQGQ--------RVALISGEATKEIAEQALEAGASGFVPKSLPAKSLV 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    D +  +   A +                 LT RE E L  +++GK
Sbjct: 112 NAVKFMVLGEQYAPIDFMTALDEEAKHPLVEK------------LTKRECEVLKGLTKGK 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L I   TV  ++ ++ RK     R+ A   A    I
Sbjct: 160 SNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQAALMAYEAGI 203


>gi|107026353|ref|YP_623864.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|105895727|gb|ABF78891.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
          Length = 215

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L  ++            +      G S   LVR    Q   LD  + 
Sbjct: 4   VLIADDHTLVRDGLRHILQNATGFEVAGEAFD-----GPSTIALVRATPAQVLVLDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +   +             L   +       +       + Y +     A 
Sbjct: 59  GRNGVELIKQIKDEK--------PALRVLVLTMHAEQQYAVRAFRAGASGYLTKESASAE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +      +        A               L+ RE +    I+ 
Sbjct: 111 LVGAVTKVASGGVYVSLAMAEQFAQSLNEPAETL--------PHQRLSDREFDVFRRIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 163 GQTLTEIANALCVSAKTVSTYKTRILEKMRMPHEAALVRYAMRHKLL 209


>gi|302562036|ref|ZP_07314378.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
 gi|302479654|gb|EFL42747.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
          Length = 233

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 11/229 (4%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
             R   V  +    D           +     +    E   G     LVR        +D
Sbjct: 15  RVRGGPVIRVLLADDQSLVRAGFRALLDAQPDIEVAGEASDGEEAVRLVRALRPDVVLMD 74

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +       ++  +A + +      L     +    F              + +     
Sbjct: 75  IRMP------VLDGLAATRRVTGDADLGEVKVVMLTTFELDEYVFEAIRSGASGFLVKDT 128

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +     ++       +  +A + A   +            T RE E + 
Sbjct: 129 EPEELLRAVRAVVEGDALLSPGVTRRL--IAEFAARSKEPAAAGGLAAL--TEREREVMA 184

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +  G +++EIA  L +S  T   +++  M K   + R+  +  A    
Sbjct: 185 LVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARARAQLVVLAYETG 233


>gi|223936278|ref|ZP_03628191.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223895140|gb|EEF61588.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 247

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 20/225 (8%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E   + + V   P   +   R++      +      +     G     ++  +      +
Sbjct: 29  EKRIKVALVEDQPEVRESWTRLLNSFPDFACVCACTS-----GEEALRIIPQEQPDVILM 83

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    + +         L +   +                   + Y    
Sbjct: 84  DIFLPRMSGIECTARLKVL--------LPQTQIVILTAMDDQELVFLALEAGADGYLLKR 135

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              A +R  L+ +   G  +        G +A      F+    +  +   L+ RE + L
Sbjct: 136 TKPADLRTALLEVLRGGAPMT-------GQIARRVIESFRRNAKNRDESVRLSVREEQIL 188

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +S+G ++  IA  L +S +TV +++  +  K    +R+ A+  
Sbjct: 189 LLLSQGYSNKLIASKLELSIDTVCSHLKHVFYKLHVSSRTEAVVR 233


>gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli]
          Length = 217

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 65/233 (27%), Gaps = 23/233 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQK 73
           +   RT     +    D       L   +     +  + E   G     L R        
Sbjct: 6   QPPARTPV--RILVCDDHAVVRAGLLALLHSAPDIEVVGEAGSGEEALALARKTAPDVVL 63

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      + +  +  + + +               + T  +           Y   
Sbjct: 64  MDLQL-----GEGIDGVETTRRLRAEPPAPHVLV--LTTYDTDADVTRAIEAGATGYLLK 116

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +         +          +A    +  +           LT RE + 
Sbjct: 117 AERAEDLFTAIQAAAQGRPALSP-------PVADRVMSRLR------NPRPALTPREQDI 163

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +S G ++  IA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 164 LAHLSRGLSNHAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 216


>gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 230

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 14/198 (7%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             GA+   +V         +D  +        +  +               T L    + 
Sbjct: 39  ADGAAVIAVVERVQPDVVVMDIRMPGMDGLAALERIRTMW--------PHITVLLLTTYD 90

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                I       + Y      V  +   +        +I  + +  +   A   +    
Sbjct: 91  EDELLIRGLQAGASGYFLKETPVETLLDAIRSAARGEMLIQPETMARLLSHATSVSPALS 150

Query: 175 SYDVHWGK------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                  +         LT RE + L  +++G+ S EIAV LGI+  TV  Y+ SI  K 
Sbjct: 151 VSRSQHPQGAGISGSIALTKRERQVLAGVAQGERSKEIAVRLGITERTVRAYLTSIYTKL 210

Query: 229 ATKTRSGAIAYAVRNNIV 246
              +R+ A+A A+   ++
Sbjct: 211 NVDSRASAVAVALAYGLL 228


>gi|296271454|ref|YP_003654086.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296094241|gb|ADG90193.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 213

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 30/228 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     V+ L      +  +       S   R+ AL               
Sbjct: 2   IRVFLVDDHEVVRRGVAALLEAEPDIEIVGEAGTVESALARVPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL R +     +           L    +              
Sbjct: 47  KPDVAILDVRLPDGSGVDLCRDLRSKLPNLAC--------LMLTSYADDEALFNAVMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       + +   +  +     ++       +           +           L+
Sbjct: 99  AGYVLKQIHGSDLVGAVRTVASGQSLLDPATTASM-------LRRLREQAAKKDPLAALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +E + L  I EG T+ +I   L ++  TV NY+++++ K   + R+ 
Sbjct: 152 DQERQILELIGEGLTNRQIGERLFLAEKTVKNYVSTLLSKLNMQRRTQ 199


>gi|237730333|ref|ZP_04560814.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226905872|gb|EEH91790.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 74/214 (34%), Gaps = 24/214 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
            A+++ L+  ++ T +  +  E   A     +  D      +D  +  +    L++ +  
Sbjct: 17  FAQLLSLEDDLNVTGQYSSAAEAWPA-----LLHDDVSVAVMDIAMPDENGLSLLKRLRA 71

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +             +   ++ +     +      + Y +       +   +  +   G 
Sbjct: 72  QKPGF--------RAIILSIYDSPTFVQSALDAGASGYLTKRCGPEELVQAVRSVGMGGH 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +  D L  +           +  +        LT RE E    + +G +  EIA  L +
Sbjct: 124 YLCADALRAL-----------RGGEQPAQVLEVLTPREREVFDLLVKGDSVKEIAFKLDL 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV+ + A+++ K    +    + +A+ + ++
Sbjct: 173 SHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206


>gi|146282442|ref|YP_001172595.1| DNA-binding response regulator GacA [Pseudomonas stutzeri A1501]
 gi|145570647|gb|ABP79753.1| DNA-binding response regulator GacA [Pseudomonas stutzeri A1501]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 30/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  + +   + +S +      L  +   D       +   L                   
Sbjct: 1   MVDDHDLVRTGISRMLADISGLQVIGQADSGEDAIRKAREL---------------KPDV 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +  S  D           +   +    P            Y 
Sbjct: 46  VLMDVKMPGIGGLEATRKLLRSYPD--------LKVIAVTICEEDPFPTRLLQAGAAGYL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +    +  +   + ++F   R I      ++ L +         +D        L+ RE+
Sbjct: 98  TKGAALEEMVQAIRMVFGGQRYISPQIAQQLALKSFQPQLSESPFD-------LLSEREI 150

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    I+  +    I+  L +S  TVN Y   I  K +  +       AV + +V
Sbjct: 151 QIALMIANCQKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVCHGMV 205


>gi|303327531|ref|ZP_07357972.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp.
           3_1_syn3]
 gi|302862471|gb|EFL85404.1| DNA-binding response regulator, LuxR family [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 12/226 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D    M  +   ++    +      + G     L      Q   +D  +   
Sbjct: 9   ICRILLVDDHKLLMEGVRSLLAPHAHLRVAGMALSGGEAVALAASLAPQIVIMDLGMPGM 68

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D  R +          V  +   L                     +   +     + 
Sbjct: 69  NGVDASRAVLQ--------VQPQARILIYTGHEDQRFLPELIDLGIMGHVRKSEPPGVLL 120

Query: 142 IGLMLLFPKGRIIL-RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +  L      +   D    +  L   + +  +      G    L+ RE E    +++G
Sbjct: 121 KAIESLRRGETFLTCPDPGGCLAELLRRRRDAAEHGGS--GDLSALSPREKEIFRLLADG 178

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K+   IA  L IS  TV  +  +++ K    +    +  A+R+ +V
Sbjct: 179 KSVKSIAQDLCISPKTVETHKYNLLTKLQAGSVGDLVKIAIRHGLV 224


>gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 210

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 66/243 (27%), Gaps = 38/243 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +++ + I++  +     S ++      D L  +           +               
Sbjct: 3   KLKPIRILVVDDHHVVRSGLAASLGLEDDLNVVGEAGNAGEAVTQFRK------------ 50

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +           +     D           L    F    +     
Sbjct: 51  ---HHPDVVLMDLRLPGANGTAATADLRREWPD--------ARVLMFTTFDGEEDIYRAM 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   +     +   +  +    R +       +    A                
Sbjct: 100 QAGARGYLLKSAAREELLSAIRAVAAGERHLSAALAQRLAGRVAAP-------------- 145

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +++ RE E L  I+ GK + EIA  LGIS  TV  + +++  K     R+ A +  +R 
Sbjct: 146 -DVSDREREVLQLIARGKANKEIAAALGISEETVKRHASNLFVKMGVADRAQATSEGIRR 204

Query: 244 NIV 246
            ++
Sbjct: 205 GLI 207


>gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 240

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 78/243 (32%), Gaps = 21/243 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++           
Sbjct: 4   AMTESATRDLLIQQMVSTISELDGQTAIENALEWLRRECNSERAMFFQFKGPVLLTF--- 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------------FCPVFHTLPENITPP 123
           ++S+            +      V++                       +  L +     
Sbjct: 61  ITSNVDEAWGDAYRQHDLITQDPVIRCYRNQLGFLNWQEAFRQYPVSAFYDELVDACELL 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   Y +     A     +  L    R I  ++ + +  L     ++ +         
Sbjct: 121 PAISYGYTN-HCRGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFC---S 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+  
Sbjct: 177 RGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCR 236

Query: 244 NIV 246
            ++
Sbjct: 237 GLI 239


>gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 224

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 69/237 (29%), Gaps = 28/237 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +     + +  + +    +  +               L                   
Sbjct: 1   MVDDHPLVRNGIRQVLSLEPDMEVVGEAGDDQEALRLAQEL---------------RPDV 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      +L+  +           L     +      +  + I         Y 
Sbjct: 46  ILLDLALPRRTGLELLPRLREE--------LPETQVVILTYSASEQDAIAALQAGAAGYL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----L 186
             +     +   +   F     +    +  +    +  + +            E     L
Sbjct: 98  VKSMAPEALAARIREAFRGDVPVSGSVMRNVLRAMSTPSELPPPTPGGQPGAGEAAESLL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + RE + L  I+ G T+ EIA  LG+S NTV NY+ SI+ K   + R  A A+A+ N
Sbjct: 158 SPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRVQAAAWALNN 214


>gi|320158823|ref|YP_004191201.1| transcriptional regulatory protein UhpA [Vibrio vulnificus
           MO6-24/O]
 gi|319934135|gb|ADV88998.1| transcriptional regulatory protein UhpA [Vibrio vulnificus
           MO6-24/O]
          Length = 203

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 27/220 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +       ++ E       + +         LD  ++
Sbjct: 5   VALVDDHVIVRSGFAQLLNLEADICVVGEFGSVAEAR-----IGLPACKPDVVILDISMA 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                 +   V  +              Y S       
Sbjct: 60  DESGLTLLSEI---------PSGIAC--IMLSVHDSPAMVEKSLKLGAKGYLSKRCSPDE 108

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +      G  +  D            A    + +       +LT RE E    ++ 
Sbjct: 109 LVQAVRTSAAGGCYLTPD-----------IAMKLATPNDKATSLTQLTRRENEVCQLLAR 157

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G     IA  LG+S  TV+ + A+ + K   K        
Sbjct: 158 GLDVKSIAAELGLSHKTVHVHRANAIDKLGVKNNVELAKL 197


>gi|320012130|gb|ADW06980.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 241

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 61/237 (25%), Gaps = 26/237 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + +  + E     +  L      L  +           R  AL              
Sbjct: 23  PIRVFVLDDHEVVRYGLRDLLDAEPDLEVVGEAATAHQAVARGPAL-------------- 68

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 + D  V      D        E       L          F      +      
Sbjct: 69  ------RPDVAVLDVRLPDGDGVTVCRELRSRLPGLACLM---LTSFDDEDALLDSIMAG 119

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +     ++       +       A+     D    +   L
Sbjct: 120 AAGYVLKEVKGTDLVAAVRTVATGQSMLDPATTTRLMESLRVPASTRSEGD---ERLSAL 176

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + RE   L  I EG T+ +I+  L +S  TV N+I+ ++ K   + R  A   A + 
Sbjct: 177 SDREKAVLDLIGEGLTNRQISKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIATKA 233


>gi|170726503|ref|YP_001760529.1| response regulator [Shewanella woodyi ATCC 51908]
 gi|169811850|gb|ACA86434.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 216

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 68/241 (28%), Gaps = 33/241 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  L      +  +                    G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRLLEDERGIKVVGEAGD---------------GETAVQWSRNN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +             +   +    P          
Sbjct: 47  EADVILMDMNMPGIGGLEATRKILRYQS--------HAKIIVLTIHTEDPFPTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L         +           L+
Sbjct: 99  SGYLTKGATPPEVLQAIRQVAHGQRYLSPEIAQQMAL--------SQFNQTEDNPFKTLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNN--YIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I+ G+  ++I+  L +S  TVN+  Y   +  K            A+R  +
Sbjct: 151 ERELQIMMMITNGEKVNDISEQLNLSPKTVNSYRYRYRLFAKLGISGDVELTRLAIRYKM 210

Query: 246 V 246
           +
Sbjct: 211 L 211


>gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 240

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 23/244 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++       L + 
Sbjct: 4   AMTESATKDLLIQQMVSTITELDGQTAIEKALQWLRRECDSERAMFYQFKGP---MLLTF 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITP 122
           ++S+      +     E      V++                        +    +    
Sbjct: 61  ITSNVDDAWGQAYRQHELITQDPVIR-CYRNQLGFLNWQDAFKQYPASACYEEAVDACEL 119

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              +   Y S           +  L    R I  ++ + +  L     ++ +        
Sbjct: 120 LPAISYGYTS-HCRGTESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKF---S 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+ 
Sbjct: 176 SRGLTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALC 235

Query: 243 NNIV 246
             ++
Sbjct: 236 RGLI 239


>gi|291300164|ref|YP_003511442.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569384|gb|ADD42349.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 219

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 17/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +  ++     +     +       GA               LD  
Sbjct: 2   IRVMIVDDEALIRSGIELILNAAPDIEVVGAVT------GARAVTETERLRPDIVLLDIR 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       ++  M          V+          F                +       
Sbjct: 56  MPDVDGLTVLDRMLSK---PSPPVVA-----MLTTFDNDEYVAAALHRGAAGFLLKDTAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + +  L   G ++         ++  Y A+  +        D  LT RE   L  +
Sbjct: 108 DHLALQVRTLAANGVVLSPKVT--STVVDGYLASTRRQSADTALIDT-LTDRERAVLVHL 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ +IA  L +   TV +++++I+ K     R  A   A R  ++
Sbjct: 165 ADGLSNADIAARLYLGVGTVKDHVSAILAKLEVANRVQAALLAERAGLL 213


>gi|262202633|ref|YP_003273841.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085980|gb|ACY21948.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 216

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 56/237 (23%), Gaps = 25/237 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +D    S +  L      L+ +           R  A               D 
Sbjct: 4   RIMLVDDDPLVRSGLRLLLGGDAELSIVAEAADGQEALERQSA---------------DP 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +           +                 +    F      +   A   +
Sbjct: 49  VDMVLMDLRMPRMDGIAATAALKQLADPPN--------VIVLTTFDADDYVVRALAVGAD 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +         I   +  +      +         L+                +   LT 
Sbjct: 101 GFLLKDTPPDEIVHAIKSVLAGRPALSPSVTA--ALIKQVVDGGGVRSAQAAQRAESLTE 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE +    ++ G ++ EIA  L +S  TV  +I+ I  K     R           +
Sbjct: 159 RERDVAVELARGASNAEIAERLYMSLATVKAHISHIFTKLDATNRVQVAICMHDAGL 215


>gi|332665795|ref|YP_004448583.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334609|gb|AEE51710.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 13/182 (7%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D+    + D ++      D      + +  K    L+         F           
Sbjct: 41  WPDVLGHYQPDLVIMELKTPDADSLQIIRQLRKINPGLRIC---VLTRFEQTSLPPQVNK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                    T  +  ++ G+  +                     +     S +     + 
Sbjct: 98  AGAQGLLLKTAALEELKEGISNILADKAYFP----------YTQEKARAHSDEGSNTGEP 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REV+ L  IS+  ++ +IA  L IS  TV+ +  +IMRK      +G +  A  + 
Sbjct: 148 LLTKREVQILQLISKAMSNKQIASQLFISYQTVSVHRKNIMRKLGVSNTAGLVRAAYDHC 207

Query: 245 IV 246
           +V
Sbjct: 208 LV 209


>gi|258655123|ref|YP_003204279.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558348|gb|ACV81290.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 60/241 (24%), Gaps = 35/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + +++  +       ++ L   +D LA                      G     
Sbjct: 1   MSPSPIRVLVVDDHAIVRRGLADLIGTADDLAVAGTAAS---------------GEEAIA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +          +D  +           +                 L    F         
Sbjct: 46  MAADLGPDVVLMDLSMPGLDGTAATARILADH--------PHVMVLVLTSFSDQRAINGA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   I   +  +   G  +       +                   +
Sbjct: 98  LEAGAHGYLLKHSEPETILAAIREVASGGSPLDPKAARVLL------------DSRRAPQ 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  +++G  +  IA  LGI+  TV  ++ S+ ++     R+ A  +  R
Sbjct: 146 PNLLTAREEQVLRMVADGLANKMIARRLGITERTVKAHLTSVYQRIGVTDRTQAALWIQR 205

Query: 243 N 243
            
Sbjct: 206 R 206


>gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911]
 gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911]
          Length = 198

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 43/238 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +       +  L +  D +  +                    G     LV   
Sbjct: 2   IRIVIAEDQRMMLGALGSLLSLEDDMEVVGKAGN---------------GEEAVALVHQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 +    F       +      
Sbjct: 47  QPDICIMDIEMPLKTGLEAAEELKG-----------ICKVIILTTFARTGYFQSAIKAGV 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    RI   + +                 D  + ++  LT
Sbjct: 96  SGYLLKDSPSEELAGSIRSVMAGRRIYAPELM-----------------DDMYAEENPLT 138

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   L  +++GK ++EIA  L I   TV NY+++I+ K   + R  AI  +     
Sbjct: 139 EREKAVLELVADGKNTNEIAAELSIKSGTVRNYVSAILEKLEVQNRIEAITRSREKGW 196


>gi|283457639|ref|YP_003362223.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133638|dbj|BAI64403.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Rothia mucilaginosa DY-18]
          Length = 235

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 22/230 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + LA ++ L+  +    ++ +  E +GA     V         LD  
Sbjct: 27  IRVLLADDQQLIREALAALLGLEVDLQIVGQVGSGDEVLGA-----VALLKPDVVLLDVQ 81

Query: 78  VSSDWPFDLVRCMALSEKDKY-YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +      D +   A            +    L    F              + +      
Sbjct: 82  MPGTLLADGIEAAAALRDAGALSESGEPVRTLIVTTFGRPGYVRRALEAGASGFVVKDTG 141

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  +    R++                      D        LT RE + L  
Sbjct: 142 ARQLAEAIRRVHAGLRVVDPSLAA----------------DSLVTGASPLTEREAQVLRE 185

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G T+ +IA  L +S  TV NY+++ M KT   TR  A+  A  N  +
Sbjct: 186 AASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 235


>gi|269217647|ref|ZP_06161501.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269212582|gb|EEZ78922.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 212

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 68/237 (28%), Gaps = 30/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++IV+  +       +  +  +   L  +                    GA    LV   
Sbjct: 2   ISIVMADDHPMIREGIKSMIEKYANLKVLGEASG---------------GARALELVEKL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+ R     +  +     +        ++ T  + +       
Sbjct: 47  RPDVLLLDLRMPDMSGSDVAR-----KALQISPDTKIL---ILTMYDTDRDILAAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +  R+   +        ++                   +      G   EL+
Sbjct: 99  SGYVLKDIEPFRLAEAIRATASGRTVLDERAARA-------VTQSVRGGSSADGGVEELS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L   +EG T+ +IA  LG+   TV  Y +    K     R+ A+  A+R  
Sbjct: 152 EQEKRVLALAAEGMTNRQIATALGVGAATVKTYFSRAFAKLDVVDRTSAVVEAMRRG 208


>gi|259047361|ref|ZP_05737762.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035983|gb|EEW37238.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 202

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 23/222 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSS 80
            +  +    D L  +  L+  +S    +  + T   G     L          +D  +  
Sbjct: 1   MIKTILIDDDFL-VLQALETILSVQDHIEVVGTGNDGRDAVELYITHQPDLVLMDIRMEP 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +    +             +   LF   F          +     Y      +  I
Sbjct: 60  TSGIEAAHEILKD--------FPKANILFLTTFQDDEYITKALSIGCKGYLLKQH-IKGI 110

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +     +                  M             L+ RE E L  ++EG
Sbjct: 111 LPAIEAVMNGQIVYDSTI------------EMPVKKTFEKKSSAHLSERENELLYLVAEG 158

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             + EIA  + +S  TV NY+++++ K   + R+    Y  +
Sbjct: 159 FNNKEIAEKMYLSEGTVRNYLSALLEKLELRDRTQLAVYYYK 200


>gi|149173052|ref|ZP_01851683.1| response regulator receiver domain protein [Planctomyces maris DSM
           8797]
 gi|148847858|gb|EDL62190.1| response regulator receiver domain protein [Planctomyces maris DSM
           8797]
          Length = 221

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 28/238 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q+  +++  +        S L    D L      D  V    ++               
Sbjct: 6   QQKTKVMIVDDHPIVREGYSRLIEHQDDLQVCGEADSKVDAIRKIME------------- 52

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  +      +L++ +             +   L   +            
Sbjct: 53  --NPPDLIIVDISLKDGSGLELIKDVKAQ--------FSQIKMLTVSMHDETLFAERSLR 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +      ++   +  +      +         ++     +   S         
Sbjct: 103 AGALGYVNKQQAPEQLIKAIYQVLKGKVYLSAAVTER--MICRSIGSDNYSDQSPIES-- 158

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L+ RE+E    I EG+T+  IA  L +S  TV  Y  +I  K   +  +    +A++
Sbjct: 159 -LSDRELEVFEQIGEGETTRSIAQKLNLSSKTVETYRENIKHKLNLENATALTRHAIQ 215


>gi|94313441|ref|YP_586650.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93357293|gb|ABF11381.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 66/222 (29%), Gaps = 18/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +  T     + E   G     LVR        LD  +     
Sbjct: 3   RVIIADDHTVVRNGLRHILERTSDFEVVGEAARGTEVPQLVRELSPHVILLDLSMPGRNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+R +                 L   +       +         Y +       +   
Sbjct: 63  LELIRQLRTDH--------PALRILVLTMHAEEQYVVRAFRAGAAGYLTKESAATELVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   G  +      ++ L    + +              L+ RE+E    I +G++ 
Sbjct: 115 LRKVAAGGTYVSPAMAEKLALGLQEKPDAPHEG---------LSDRELEVFRRIVDGESL 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L +S  TV+ Y   +M K   ++ +  + YA+   +
Sbjct: 166 TQIAAALCVSAKTVSTYKMRLMEKLQLRSDAALVRYAIEARL 207


>gi|315444762|ref|YP_004077641.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315263065|gb|ADT99806.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 216

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L      L  +           R+                  
Sbjct: 2   VKVFLVDDHEVVRRGLIDLLGSDPELDVVGEAGSVSEALTRVPTA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRELLSLMPDLRC--------LMLTSFTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +           +           LT
Sbjct: 99  SGYVVKDIKGMELARAIKEVGSGRSLLDNRAAAAL-------MAKLRGEGERTDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +
Sbjct: 152 DQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVF 203


>gi|312889097|ref|ZP_07748656.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298407|gb|EFQ75517.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 23/224 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-------------LFQEQKLDSIVSSDW 82
           +  ++  + +   + A+    G    +    D             L     +D ++ S  
Sbjct: 9   IGIVEDQLLFREGIKAILHNWGDFSVIFESADGHSVIQKLSTTAVLPDVMLVDLMLPSIN 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +           + Y  ++        V       I       + Y     D   +  
Sbjct: 69  NKEYRGSHLTLALGELYPSIKVL---ILSVHDDENFIIELVKNGAHGYLVKDCDPQELHD 125

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            ++ ++ KG  I    L  I        N              ++ RE E L    +  T
Sbjct: 126 AIVAVYTKGSYINSRTLTAIQ-------NNMGRKVKSKKLLVNISAREEEILRLTCQQYT 178

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EIA  L IS  TVN +  +++ KT ++  +G + YA++NNIV
Sbjct: 179 AEEIANKLFISVKTVNGHRNNLLIKTGSRNVTGLVIYAIKNNIV 222


>gi|296387109|ref|ZP_06876608.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
          Length = 209

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +                  
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEQLLETLR---------------GT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +            + P  L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIPRIRALN--------EPPAILVLSMHDEAQMAARALKIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAGGGRYIDPDLADRMVFEVGLTDSR--------PPHALLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      + +G   +EIA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLVQGANVNEIAQQLAVSNKTISTHKARLMQKLNAHSVADLVRYAMEHRLL 209


>gi|261341663|ref|ZP_05969521.1| hypothetical protein ENTCAN_08132 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316021|gb|EFC54959.1| transcriptional regulatory protein UhpA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 197

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+          +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLSLEPDFQVVAEFGS-----GREALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  LSGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVRTVATGGCYLTPDIAIKLA----------------AGRQDPLTRRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIA  LG+S  TV+ + A++M K            
Sbjct: 153 MAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|126174167|ref|YP_001050316.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|125997372|gb|ABN61447.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 214

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 17/189 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G + +            +D  +     FD++R +     +           +        
Sbjct: 43  GLAVYEKCLKLRPDLVFMDLKLPGMGGFDVIRQLRQRWPEM--------MIIMLTATVEE 94

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      N Y       + +   +  +      I                 +    
Sbjct: 95  KSAREALDVGANGYVLKYSPKSTLLAAIKCVCKGKNFIDPSLDER---------QIAALS 145

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            V  G    LT RE + L  I EG+ + +IA  L I   TV  +  ++MRK      +  
Sbjct: 146 GVVDGDMPLLTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAEL 205

Query: 237 IAYAVRNNI 245
           + +  R  +
Sbjct: 206 MHWVQRLGL 214


>gi|315091877|gb|EFT63853.1| putative nitrate/nitrite response regulator protein NarL
           [Propionibacterium acnes HL110PA4]
          Length = 210

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +     + V+ L      +  +              A  +       L    D
Sbjct: 3   VRVLIADDHPVVRAGVTALLDTDPDIEIVATAATPSQALAAA-ATVDLDLVLLDLQFSSD 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D              + L+                     T  + +       
Sbjct: 62  ADAPSGVDVTRKIRSQPSAPEVLILTNY------------------DTDADILAAVEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       + +                     LT
Sbjct: 104 TGYLLKDAPAEDLLSAIHRSARGEGALAPAVAPRLMV-------------RMRSPRTSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L   ++G ++ +IA  L +S  TV  +++ I  K    +RS A+A A     +
Sbjct: 151 AREFDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|15595798|ref|NP_249292.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107099587|ref|ZP_01363505.1| hypothetical protein PaerPA_01000600 [Pseudomonas aeruginosa PACS2]
 gi|116054329|ref|YP_788774.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218889342|ref|YP_002438206.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254237185|ref|ZP_04930508.1| hypothetical protein PACG_03239 [Pseudomonas aeruginosa C3719]
 gi|254243695|ref|ZP_04937017.1| hypothetical protein PA2G_04521 [Pseudomonas aeruginosa 2192]
 gi|313111753|ref|ZP_07797546.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9946474|gb|AAG03990.1|AE004496_6 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115589550|gb|ABJ15565.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169116|gb|EAZ54627.1| hypothetical protein PACG_03239 [Pseudomonas aeruginosa C3719]
 gi|126197073|gb|EAZ61136.1| hypothetical protein PA2G_04521 [Pseudomonas aeruginosa 2192]
 gi|218769565|emb|CAW25325.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310884048|gb|EFQ42642.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 210

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +                  
Sbjct: 3   IRVLVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEQLLETLR---------------GT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +            + P  L   +               
Sbjct: 48  PCEVVLLDISMPGVNGLEAIPRIRALN--------EPPAILVLSMHDEAQMAARALKIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 100 AGYATKDSDPALLLTAIRRVAGGGRYIDPDLADRMVFEVGLTDSR--------PPHALLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      + +G   +EIA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 152 EREFSVFERLVQGANVNEIAQQLAVSNKTISTHKARLMQKLNAHSVADLVRYAMEHRLL 210


>gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM
           45100]
          Length = 240

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 69/248 (27%), Gaps = 36/248 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  +     + +     R++L A    +   +     +   T  +          
Sbjct: 10  PIRVFLVDDHSIFRAGL-----RAELGAAGNGVIDIIGEAGSVREATTQI--------AD 56

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       +V+    +              L   V     + I      
Sbjct: 57  LTPDVVLLDVHMPDGGGLAIVQHCITAGYS--------TRFLCLSVSDAAEDVIALIRAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL---------------AAYQAN 171
              Y + T +   +   +  +     +        +                  A     
Sbjct: 109 ARGYVTKTIESRELVSAIGRVHSGDAVFSPKLAGYVLDAFSTPTSGQSNQYMAGAGEPVA 168

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +  +       ELT RE E L  ++ G T  E+A  L IS  TV  ++++I+RKT   
Sbjct: 169 ASEEDEEKRLVLDELTRREKEVLRLLARGYTYREMAERLFISVKTVETHVSNILRKTQQS 228

Query: 232 TRSGAIAY 239
            R     +
Sbjct: 229 NRHALTRW 236


>gi|295695280|ref|YP_003588518.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295410882|gb|ADG05374.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 223

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       ++ + +    +  +           ++ AL              
Sbjct: 6   RIRVLIVDDHSIVRRGIAFMLSTQPDMEVVGEAADGREAVQKVLAL-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 K   ++        +  +A +E+ K          +   ++             
Sbjct: 52  ------KPHVVLMDLSMPQGLDGIAAAEEIKD--QFPEVKVIVLTMYDEDVYLCRLLRNG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         +   +  +         +   EI      +       +        L
Sbjct: 104 VEGFLLKQTAGENLIQAIRQVMNGDYWFESELPKEI----VDEMKQRPEPENCDEDAVIL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L +++ G  + E+A  L IS  TV N+ A++MRK    T    I Y  RN ++
Sbjct: 160 TEREREVLVFLARGYQNREVAKELNISVKTVENHKANMMRKLGVSTVRELIEYGRRNRLL 219


>gi|146309694|ref|YP_001174768.1| DNA-binding transcriptional activator UhpA [Enterobacter sp. 638]
 gi|145316570|gb|ABP58717.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 197

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+          +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLSLEPDFQVVAEFGS-----GREALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +  + +   V  +              + S       +
Sbjct: 60  LSGLELLSQLP-----------KGLSTIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  +   ++                  G+   LT RE +    +++G
Sbjct: 109 ISAVRTVAAGGCYLTPEIAIKLA----------------AGRQDPLTKRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIAV LG+S  TV+ + A++M K            
Sbjct: 153 MAVKEIAVELGLSPKTVHVHRANLMEKLDVSNDVELARR 191


>gi|472403|gb|AAA98759.1| response regulator/transcription activator [Pseudomonas
           fluorescens]
          Length = 213

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    L  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLLKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++   +                   L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQ--------PSSDSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|120554118|ref|YP_958469.1| two component LuxR family transcriptional regulator [Marinobacter
           aquaeolei VT8]
 gi|120323967|gb|ABM18282.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 219

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + E   S ++ +   +  +  +                    G      VR +
Sbjct: 2   IRVLVVDDHELVRSGITRMLADNPDIDVIGQASS---------------GEEAIDCVREN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +         ++      +        P          
Sbjct: 47  RPDIVLMDIRMPGIGGLEATRRI----LRIDDSI----RVIVVTACADDPYPARVMQSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D+  +   +       R I  +   ++ L    Q    +  D        L+
Sbjct: 99  TAYVTKGADIQEMVRAIRKAHSGQRYISPEIAQKMAL---KQLGGERDEDGELSLFERLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    + + +   +I+  L +S  TVN+Y   I  K    +       AVR  ++
Sbjct: 156 EREMQIAMMVVDCQKVQDISDKLCLSPKTVNSYRYRIFEKLEISSDVELALMAVRLGLL 214


>gi|260772980|ref|ZP_05881896.1| BarA-associated response regulator UvrY [Vibrio metschnikovii CIP
           69.14]
 gi|260612119|gb|EEX37322.1| BarA-associated response regulator UvrY [Vibrio metschnikovii CIP
           69.14]
          Length = 188

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       R +      +D  +      +  + +     D           +   +    
Sbjct: 10  GEDAVKWCRSNHTDIVLMDMNMPGIGGLEATKKILRFNPD--------VKIIVLTIHTEN 61

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P            Y +       +   + ++    R I  +   ++ L     A+     
Sbjct: 62  PFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVNSGQRYISPEIAQQMALSQFSPASE---- 117

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE++ +  I++G+   +I+  L  S  TVN+Y   +  K         
Sbjct: 118 ----NPFAGLSERELQIMMMITKGQKVTDISEQLNFSPKTVNSYRYRLFAKLDINGDVEL 173

Query: 237 IAYAVRNNIV 246
              A+R+ ++
Sbjct: 174 THLAIRHGML 183


>gi|104782489|ref|YP_608987.1| response regulator [Pseudomonas entomophila L48]
 gi|95111476|emb|CAK16196.1| response regulator GacA (Global antibiotic and cyanide control
           protein, LuxR/UhpA family) [Pseudomonas entomophila L48]
          Length = 212

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D                G S   L R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGEADS---------------GESALKLAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S  D           +   V    P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSHPD--------TKVVAVTVCEEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L F   R I      ++ L         KS+         L+
Sbjct: 99  AGYLTKGAGLDEMVQAIRLAFAGQRYICPQIAQQLAL---------KSFQPQGSPFDALS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 150 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 208


>gi|56681815|gb|AAW21508.1| nitrate/nitrite regulatory protein [Methylophaga
           aminisulfidivorans]
          Length = 226

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 75/237 (31%), Gaps = 25/237 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++V+  +       V  L   S+ +  +   D   +                      
Sbjct: 5   PISVVVVDDHPLFRRGVVELLNDSEEMTVIAEYDNAEAL--------------------L 44

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D  +    D ++             L +  ++     +   +     +   + +      
Sbjct: 45  DNIENTYPDILLLDMQMPGKSGLGVLKQLREHD---NQLKIIIITACNEQDKLLEALRYG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N Y         I   LM +      +    +  +   +  + N     +        +
Sbjct: 102 ANGYLQKDTPPDEILSQLMSVLHGNVAMNAGAVTSLA--SHLRENKDDENNPSSAILSHM 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T RE E L +I++G  +  IA  LGIS  TV  Y+ S++RK    +R    A+A RN
Sbjct: 160 TERERETLFYIAKGLNNKLIARELGISDGTVKVYVKSLLRKVNLHSRLELAAWAHRN 216


>gi|13661170|dbj|BAB41136.1| GacA [Pseudomonas fluorescens]
          Length = 213

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +      ++   L               
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEEALIKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++ + +    N              L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN--------DSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|227495115|ref|ZP_03925431.1| response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831567|gb|EEH63950.1| response regulator [Actinomyces coleocanis DSM 15436]
          Length = 202

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 64/227 (28%), Gaps = 28/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V       + LA ++ L   V  + +     + +     LL +         D  + 
Sbjct: 4   VLLVDDQNLVREALAALLELTGEVEVSAQASNGNQALE----LLEQHPEIDILLTDIEMP 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 L                 +        F          +     +         
Sbjct: 60  EMDGLSLCENAQKL--------YPQLLVCILTTFGRSGYVQRALSAGARGFLVKDAPSKE 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +    ++I      E   L                 +   T RE E LT  ++
Sbjct: 112 LVTALEKIKAGQKVIDPQLAVEALSL----------------PNSPFTQREKEILTAFTD 155

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T  E+A  L +S  TV N+I++I+ KT  K R+ A   A  N  +
Sbjct: 156 SATVAEVAAKLFLSPGTVRNHISNIISKTNAKNRAEAARIAKENGWI 202


>gi|146343451|ref|YP_001208499.1| two-component LuxR family transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146196257|emb|CAL80284.1| putative two-component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 261

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 75/226 (33%), Gaps = 18/226 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVS--WTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             +  +HL    D       L   V+      +            LL +        LD 
Sbjct: 38  MAAASTHLVIADDHPLFRNALRQAVASVLAEAVVDEAGSFEDLTALLEKDSEVDLVLLDL 97

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +     F  +     ++      V+   ++    +  +L           + +    F 
Sbjct: 98  TMPGISGFSGL-IYLRAQYPAIPVVIVSASDDGATIRRSLDF-------GASGFIPKRFG 149

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V  +R  +  +      +  D            A +         +   LT ++V  L  
Sbjct: 150 VDTLRDAIQKVMDGEVWVPPDT--------DLAAGVDPEMTKLRDRLVTLTPQQVRVLMM 201

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +S+G  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 202 LSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 247


>gi|302540281|ref|ZP_07292623.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457899|gb|EFL20992.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 59/234 (25%), Gaps = 26/234 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + E     +  L      +  +           R  AL              
Sbjct: 15  PIRVFLLDDHEVVRRGLHDLLDAEPDIEVVGDAGTVDHALARGPAL-------------- 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       + R +                 L    F      +      
Sbjct: 61  -RPDVAILDVRLPDGDGITVCRELRSRMPGLAC--------LMLTSFDDDDALLDAIMAG 111

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       + +   +  +     ++       +              +        L
Sbjct: 112 AAGYVLKQIKGSDLVSAVRTVASGQSMLDPATTARL---MRTLRGDDTPQEPRDEALAGL 168

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + RE E L  I EG T+ +I   L +S  TV N+I+ ++ K   + R  A   A
Sbjct: 169 SPREREILALIGEGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAVLA 222


>gi|291302327|ref|YP_003513605.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571547|gb|ADD44512.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 222

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  + +     + H  +R      +           +  AL               
Sbjct: 11  TTVLIVDDHDLIRKGLRHAFSRDPQFEVVAEAGSAGDGLRKAAAL--------------- 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +       VL         ++    +         
Sbjct: 56  QPNVVIMDLRLPDGSGLEATRKLRKAHPSMGIVVL--------TMYAGDDQLFGALEAGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +     +                         AA  A   K      G   +L+
Sbjct: 108 SAFVPKSAPSDDVVSAAR----------HAATTPNAFTAADLAEAMKRRLTPSGP--QLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +++G +   IA  L +S +T   +I+ +  K     R+ A+  A++  ++
Sbjct: 156 PRESQVLKLLADGMSVAGIAKQLYVSESTAKTHISKLYEKLGAGNRAQALMTALKLGLL 214


>gi|260904164|ref|ZP_05912486.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 222

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 57/228 (25%), Gaps = 19/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             GA    L R        +D  
Sbjct: 3   IRVIIADDESLMRSGLRLLLGAADDIDIIAEA-----ANGAEAIELARELSPDLILMDIR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 L    F T    +         Y       
Sbjct: 58  MPVMDGLEATRALMAQTLHPE--------VLILTAFGTDEFVLQALRSGAAGYILKDTPP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIG------LLAAYQANMFKSYDVHWGKDFELTGREV 191
             +   +       R +    +  +             A+ + S  +       LT RE 
Sbjct: 110 EDLIHAVRAAANGTRTLSPSAVESLLGRDTTSATGVAGASNWNSVPIGPDPLEPLTTRER 169

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E    +++G T+ ++A  L +S  TV  ++A I  K    TR      
Sbjct: 170 EIAEAVAQGMTNAQVARALFVSTATVKTHLARIFYKLDVSTRVQLALL 217


>gi|77460178|ref|YP_349685.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77384181|gb|ABA75694.1| putative LuxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 219

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +   +        +  L+               
Sbjct: 4   NLLLVDDHSLIRAGVRALVLDIPGYAVIGEANDGSQLLEMVELLS--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + ++ +          V      L   +       +       +
Sbjct: 49  PDIVLLDISMKETGGLEALQRLRR--------VRPHAKVLILSMHTDPALIMQALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +          +                +   LT 
Sbjct: 101 GYLLKDTTATELEHALEALRNNERYLSPAIA---HTVINQALTRNLKQQPEVAESHNLTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIANGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFAVREQII 215


>gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense]
          Length = 272

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 75/229 (32%), Gaps = 18/229 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
             ++       +    + A     G              +     V + +P   V    L
Sbjct: 45  FEQIKAAANVDAAIRILQA---EYGLDFVTYHLAQTIAAKIDSPFVRTTYPDAWVSRYLL 101

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRI 142
           +   K   ++++  E   P   +  E                   N Y     D A+ R 
Sbjct: 102 NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 161

Query: 143 GLMLLFP----KGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWI 197
            L L       +   ++R    E   +A                    L+ RE+ECL W 
Sbjct: 162 LLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLHWT 221

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 222 ALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 270


>gi|333027004|ref|ZP_08455068.1| putative LuxR family two-component response regulator [Streptomyces
           sp. Tu6071]
 gi|332746856|gb|EGJ77297.1| putative LuxR family two-component response regulator [Streptomyces
           sp. Tu6071]
          Length = 264

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 19/238 (7%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + L  + E     +  L      +  +           R+ A               
Sbjct: 35  PVRVFLLDDHEVVRRGLRDLLEAEPDIVVVGEAADAREALARVPAT-------------- 80

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + S    D        E       L          F             
Sbjct: 81  -RPDVAVLDVRLGSATGGDHEGVEVCRELRAELPELACLM---LTSFDDDEALFDAIMAG 136

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
              Y     + + +   +  +     ++        +  +   +           G+   
Sbjct: 137 AAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREPEPEKPAPSRALPGELDR 196

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     R  A   A R 
Sbjct: 197 LSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGRRIQAAMIAERL 254


>gi|190894996|ref|YP_001985289.1| transcriptional activator protein [Rhizobium etli CIAT 652]
 gi|190700657|gb|ACE94739.1| transcriptional activator protein [Rhizobium etli CIAT 652]
 gi|327193288|gb|EGE60194.1| transcriptional activator protein [Rhizobium etli CNPAF512]
          Length = 241

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L R+            +  +      SH +L           + ++   +P + V+    
Sbjct: 11  LDRISASPTLQDLETTLDEVRHIYAISHMVLHVTRFAGATDSNPLLMLTYPPEWVKQYRD 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTL-----------PENITPPAGMDNRYCSLTFDVARIR 141
            +      V++     F PV  +             +                      R
Sbjct: 71  RDYFSIDPVVRLGRRGFLPVEWSASGWDSGRAYGFFKEAMAFGVGRQGVTLPVRGPQGER 130

Query: 142 IGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLT 195
               +         R    D + ++  LA +  +     S          L+ RE++CL 
Sbjct: 131 SLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPRLSRRELQCLE 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G  + +I   L IS + V  Y+AS  RK    T S A+A A    ++
Sbjct: 191 MTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI 241


>gi|218533310|ref|YP_002424125.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525613|gb|ACK86197.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 218

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V I+L  +          L  R      +   +                    + L 
Sbjct: 1   MSEVTILLVDDHPIVREGYRRLLERQAGFRVVAEAETASE---------------AYRLF 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      + +R +   + D    VL                 +    
Sbjct: 46  RETAPSVVVMDLSLGGPSGLEAIRNI--RQWDGQARVLVFTMHQGSAF------ALKAFE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + +   +     +  +    R +  D   EI           +          
Sbjct: 98  AGAAGYVTKSSAPSEFVTAVTAVAQGRRAVSADIAQEIA---------AERLAGKISPLN 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  REVE L  ++ G  ++ IA  L +S  TV NY   I  K   +  +  +  AV   
Sbjct: 149 DLAPREVEILRLVASGLATETIAEALHLSPKTVQNYHYGIKAKLGARNDAHLVWLAVSAG 208

Query: 245 IV 246
           ++
Sbjct: 209 VL 210


>gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 232

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 59/228 (25%), Gaps = 13/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           RT+    +    D       L   +     +  + E                  + D ++
Sbjct: 18  RTTAGIDVLLVDDHAIVRQGLRSILEREPGLRVVAEA----ATAAEALARVNSARPDIVL 73

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                        L               L    F      +         Y     D  
Sbjct: 74  LDLKLSSSSDAEGLELCAALTQRHPEALILVLTTFLDEQLVMQAIRAGARGYVVKDVDTT 133

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G          +                    D ELT RE+E L  ++
Sbjct: 134 GLVRAIRDVASGGSAFDARSAAAMIRGVNM---------PVTSDDSELTSRELEVLELLA 184

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++  I   L IS  T   ++ +I+RK     R+ A+  A +  ++
Sbjct: 185 HGLSNRAIGHRLYISDTTAKFHVGNILRKLGVSRRAEAVYEASKMGLL 232


>gi|170767648|ref|ZP_02902101.1| fimbriae Z protein [Escherichia albertii TW07627]
 gi|170123136|gb|EDS92067.1| fimbriae Z protein [Escherichia albertii TW07627]
          Length = 210

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 71/242 (29%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  + D L  ++  D                       +
Sbjct: 1   MRPASVIVMDTHPIIRMSIEVLLEKHDNLQIVLKTDDH---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +          +      LF               
Sbjct: 46  RCHSVDLIIMDIDLPGIDGFTFLKKIKQ--------IQSATRVLFLSSKTECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S   D   I   + ++         + +  I   + +    +           
Sbjct: 98  AGASGFVSKCHDQNDIFHAVQMILAGYTFFPSETIHYIK-NSQHAHECYI--------ST 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 PLTNRELTILRYLVNGLSNKEIAGQLLLSNKTVSAHKSNIYSKLGLHSIVELINYARLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|148509167|gb|ABQ81805.1| GacA [Pseudomonas alkylphenolia]
          Length = 207

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 69/235 (29%), Gaps = 32/235 (13%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  + +   + ++ +    D L  +   D                G +   + R      
Sbjct: 1   MVDDHDLVRTGITRMLADIDGLQVVGEADS---------------GEASLKVARELKPDV 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +  S        ++      C      P            Y 
Sbjct: 46  VLMDVKMPGIGGLEATRKLLRSH-----PDVKVVAVTAC---EEDPFPTRLLQAGAAGYL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +    +  +   + L+F   R I      ++ L         KS+         L+ RE+
Sbjct: 98  TKGAGLDEMVQAIRLVFAGQRYISPQIAQQLAL---------KSFQPQGSPFDALSEREI 148

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 149 QIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHGMV 203


>gi|328883635|emb|CCA56874.1| putative two-component system response transcriptional regulator
           [Streptomyces venezuelae ATCC 10712]
          Length = 219

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 70/242 (28%), Gaps = 32/242 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +  D +  +          +R+ A            
Sbjct: 3   EEGKIRVFLLDDHEVVRRGVHELLSVEDDIEVVGEAGTAADALVRIPAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   ++            L    +          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCREIRSQDEGIKC--------LMLTSYADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWG 181
               + Y         +   +  +     ++                   +  +      
Sbjct: 100 MAGASGYVLKAIRGNELLNAVRDVAAGKSLLDPVATAR-------VLERLRDGNNSKGDD 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 153 KLANLTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVA 212

Query: 242 RN 243
           R 
Sbjct: 213 RL 214


>gi|329117545|ref|ZP_08246262.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907950|gb|EGE54864.1| response regulator receiver domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 223

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + L  ++  +  +             G         +  +  K D I+ 
Sbjct: 4   VMIADDQELIRESLKIILSANNDIEIVSSASN-----GFE-----VLEKIECNKPDIILM 53

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +   +   E    Y  ++    +    F       +      + Y      ++ 
Sbjct: 54  DIRMPKMDGVVCTKEVKDRYPDIKI---IILTTFDDDEFIFSALKHGASGYLLKGVSMSE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  ++  G +I  D   ++    +  +    S  V   +   ++  + + +  +  
Sbjct: 111 LHEDIKTVYNGGAMINPDIATKVFKAFSQMSQNTSSIKVKETEIENISKMDWKIIQQVGL 170

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G ++ EI+  L +S  T+ NY+++++ K   + R+    +AV+  
Sbjct: 171 GLSNKEISNKLYLSEGTIRNYLSTVLSKLNLRDRTQLAIWAVQTG 215


>gi|170692985|ref|ZP_02884146.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170141983|gb|EDT10150.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 210

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       +  +   +  +              ++                  
Sbjct: 2   INLLIADDHPLVRGGLKQIIETTPDIVVAGEAAQGSEVIEKLRT---------------C 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL+R +                 L   + +             
Sbjct: 47  QVDLLLLDMTMPGISGVDLIRRVRAER--------PSLPILVLSIHNEAQVVSRALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   +   +  G+  L   GR I    +  I          F++Y         L+
Sbjct: 99  TGYVTKDSNPDVLLAGIRKLAEGGRFIDPKLVEGIV---------FETYSGDAPPHEILS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK+ ++IA    +S  T++ +   +M+K      +  I YA+R+ +V
Sbjct: 150 DREFQVLQMLALGKSLNDIADAFALSAKTISTHKMRLMQKLGLANNAELIRYAIRHGLV 208


>gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli]
          Length = 241

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 70/215 (32%), Gaps = 15/215 (6%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  L    G              +     V + +P   V    L+   K   ++++  
Sbjct: 25  AAIRILQAEYGLDFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLLNSYVKVDPIVKQGF 84

Query: 107 ELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           E   P   +  E                   N Y     D A+ R  L +          
Sbjct: 85  ERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNARIPADHWA 144

Query: 157 DRLW----EIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + +     E   +A                    L+ RE+ECL W + GK   +I+VILG
Sbjct: 145 ELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLHWTALGKDYKDISVILG 204

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 205 ISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 220

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 73/235 (31%), Gaps = 18/235 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           + R    R             L  ++  +  +             GA    +VR      
Sbjct: 1   MTRPAPIRVVLADDERMVRTALRAILSAEPDLEVVGEA-----ATGAEAVSVVRELRPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           +  +         + P  +    F                + 
Sbjct: 56  VLMDVRMPQTDGIRATEQILGTLD-------EPPRIIVVTTFENDSYVYDALRVGAAGFL 108

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D   +   + L+     ++    +  +           +++        +LTGRE 
Sbjct: 109 LKRSDADALVQAVRLVARSDSLLFPAAVRTLAT------AHARAHPAPPAWVAKLTGRER 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G T+ EIA  + +   TV +++A+++ KT T+ R+ A+  A     +
Sbjct: 163 EVLRRMADGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGFL 217


>gi|138895707|ref|YP_001126160.1| two-component response regulator ComA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250961|ref|ZP_03149644.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
 gi|134267220|gb|ABO67415.1| Two-component response regulator ComA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209525|gb|EDY04301.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. G11MC16]
          Length = 223

 Score =  106 bits (264), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D           +             G     ++    +    LD  +      
Sbjct: 3   HILVVDDHRLVGEGTKNMLESEQDFQVELVTSGTEAEQMMEQRTYDVFLLDWRMPDMSGT 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +   + +    ++        P F+ L E+          + S T    ++   +
Sbjct: 63  ELSKRILQKQPNAK--IVIYTGYDVAPFFNYLIES------GITGFVSKTATSEQLITAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I    L ++ L         K+  V   +   L+  E E L  ++ G ++ 
Sbjct: 115 RCALRDEAVIPVHLLRQLQLC------EVKARMVENEEHVALSQLEQEILFEVANGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA    IS+ +V  +++ I  K    +R  A+  A +  ++
Sbjct: 169 DIAKKHYISQRSVERHLSRIFTKLHVSSRIEAVEKARQLGLI 210


>gi|163755190|ref|ZP_02162310.1| hypothetical protein KAOT1_07218 [Kordia algicida OT-1]
 gi|161324610|gb|EDP95939.1| hypothetical protein KAOT1_07218 [Kordia algicida OT-1]
          Length = 218

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 17/230 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           +     V            +  L         +Y +         LL   ++     LD 
Sbjct: 3   KHSVVIVDDHLL---FAQSLQGLVNAFDEFEVLYHVKNGSELIKKLLESENVPDIILLDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +     F+ +  +  +        +Q                I         Y      
Sbjct: 60  NMPVMNGFETMEWIKENR-----PSIQVLALSMD---DHEETIIKMLRLGAKGYLLKDIH 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                  L  +   G          + L + +  +  ++      KD ELT      L  
Sbjct: 112 PEIFYKALNEVISNGIYYSERVATTL-LNSLHGGDEKETSKGKQLKDTELTF-----LKL 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
                T  EIA  + +S  T++ Y  S+ +    K+R G + YA+RNN+V
Sbjct: 166 ACTEMTYKEIAQEMCLSPKTIDGYRESLFKHFKVKSRIGLVLYAIRNNMV 215


>gi|298250649|ref|ZP_06974453.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297548653|gb|EFH82520.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 219

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I+L  +          L       + +                    G     L +  
Sbjct: 5   ISILLVDDHTMMREGTRRLLEEDPRFSVVGEAGD---------------GTQALALCQQY 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     LD  +     F + R +   E        + P  L    +  +    T      
Sbjct: 50  MPDVVILDISMKGMNGFSVARSLLAHE--------KPPAILVLTAYEQITYIQTMLKLGV 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + IR  ++ +    R +  +    +     +     +           LT
Sbjct: 102 KGYWLKSARSSDIRQAVLDVADNKRTLDPEVREVLEKYEGHALIQVER----------LT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  I +G  + EIA  L IS  TV  Y+ S+  K   ++R+  IA A +  ++
Sbjct: 152 NREFAVLRLIIQGTRNSEIAQRLAISIKTVEAYLTSLYGKLGVQSRAEVIALAQKQGLL 210


>gi|255035822|ref|YP_003086443.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948578|gb|ACT93278.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 220

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +       +  L    + L               +  +              
Sbjct: 2   PIRILVVDDHSVVRQGIITLLEDEEDLIIAGEASDGDEVWDMVEKV-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +++R +          V      L   + +     ++     
Sbjct: 48  -KPDVILLDLTMPRMPGLEVIRQIV--------PVFPSAKILVFSMHNNTDYVLSSALNG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            + Y         +   +  +               +  +    A   +   + +    K
Sbjct: 99  ASGYLEKDTSREEMLRAIRAIAKGDLYFPPYASSVIIKNLLKQLARVPDTRAAQEEVQEK 158

Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                +T RE + L  ++EG +S +IA    IS NTV N  ASIM+K   +  +  I+ A
Sbjct: 159 SIWKIITPREQQILKCLTEGMSSKDIAEKFDISSNTVANQRASIMKKANVRNTAELISLA 218

Query: 241 VR 242
           ++
Sbjct: 219 MK 220


>gi|187923376|ref|YP_001895018.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187714570|gb|ACD15794.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 292

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 35/237 (14%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D +R   +  L  + D LAR             +                      Q+ D
Sbjct: 9   DAERRDGLKALLRQIDRLARFNEAQDWRQVERTLKR--------------------QRPD 48

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--FCPVFHTLPENITPPAGMDNRYCSL 133
            ++      D +    +     +Y  L+         P       +              
Sbjct: 49  LLLVD--WEDWMSIADVRHLLSHYPDLRVAVLSDQISPAAVRDLMDE-----GVLGVVPR 101

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGL----LAAYQANMFKSYDVHWGKDFELTGR 189
             D   I     ++   G  +    L         +     +              L+ R
Sbjct: 102 DTDPCLIVRAFEMVLLGGHYVPPGALALDPPLPPDITIRPFDEKSPPPRRARLANVLSPR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 162 QQQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae]
          Length = 246

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 68/225 (30%), Gaps = 18/225 (8%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
            +    +  + +    ++               +      V + +P   V    L++   
Sbjct: 16  AVKNAATVAVALDEFQQHYPVDFVTFHLARTIVDSVDAPFVRTTYPDSWVSRYLLNDYIN 75

Query: 98  YYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFD-VARIRIGLML 146
              +++       P      +          +        N       D   R  + +  
Sbjct: 76  VDPIIREGFSRQLPFDWREIDIPDSAHQFMVDAEMHGIGGNGVSIPIVDKSRRSLLSINS 135

Query: 147 LFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                     +        E+G L                    L  REVECL W S GK
Sbjct: 136 QMSDEEWTAIERQFLPEWTELGFLLHR--KAVFELHGENDPVPALGTREVECLHWASRGK 193

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S +IA ILG+S +T   Y+ S   K    T S AIA+AV  N++
Sbjct: 194 DSKDIAEILGLSEHTARGYLKSARYKLGCPTLSAAIAHAVHLNLI 238


>gi|302036405|ref|YP_003796727.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604469|emb|CBK40801.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 234

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 68/237 (28%), Gaps = 19/237 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS----------HFLLVRWDLF 69
                 LP     + R++  D        +                           D  
Sbjct: 7   MDACQDLPPAKADV-RILLADDHALLRRGLREFLRDFLVEDGLTPDIVETTSARHAIDHI 65

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +    D ++      D+     L         L         ++     +          
Sbjct: 66  RTGAWDLVILDLNLPDMPGLEVLRILKSLRPALPVLVVS---IYAEEHYSARAIRAGALG 122

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +       +R+ +  +   G  +             +     ++          L+ R
Sbjct: 123 YLTKERGPQELRLAVSRILQGGHYLPSPETEHSLDEGPH-----RNGSSPDTLPATLSDR 177

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L WI++G+   EIA  L +S  TV+ Y + ++ K   +T +  I YA+   +V
Sbjct: 178 EIEVLQWIAQGRRLTEIAEQLNLSIKTVSTYRSRLLIKLGMRTTAELIRYALDQQLV 234


>gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 224

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 63/215 (29%), Gaps = 13/215 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   +     +             L R        +D  +      +
Sbjct: 8   VLVVDDDALVRDGLRRILESADDIRVPAVCGPGEALALARRHRPDVALVDLHMPGTDGIE 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++R +  S         + P       F                +      V  +  G+ 
Sbjct: 68  VLRGLRASA--------RPPRVAVLTGFGEDEHVRRALRAGAAGFLLKDSAVDELIPGVR 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LL   G  +    +  +   A  +A               LT RE E L  +  G +++E
Sbjct: 120 LLAAGGSALSERVVRSLPDGAGKEAAPADPPGARL-----LTAREREVLELLPSGMSNEE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           I   L +SR TV ++++S++ K     R  A   A
Sbjct: 175 IGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209


>gi|196233743|ref|ZP_03132582.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222105|gb|EDY16636.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 249

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 17/223 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   D LA+ I L+  +S      +++  +       V         +D  + 
Sbjct: 20  VLLVDDHPVVRDGLAQRIALEPDLSVCAACESVSRAL-----REVTVHHPDLAVVDLSLP 74

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           S    DL++ +        Y  ++                          Y         
Sbjct: 75  SGHGLDLIKEIHA-----RYPEVRLLVFSM---HDEQTYGERALLSGAQGYVMKDESPDE 126

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +      I       +       A   +           L+ RE+E L W+ +
Sbjct: 127 VLAAIRKVLSGRISISAHLSARLA----EAAASTRGTRARKLPMDRLSNRELEVLEWMGQ 182

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           GK+   IA  L  S  T+  Y   +  K   ++ S  IA+A R
Sbjct: 183 GKSVKAIAQRLERSAKTIETYRQRLKEKLNIESNSELIAHAAR 225


>gi|160875358|ref|YP_001554674.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160860880|gb|ABX49414.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315267557|gb|ADT94410.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 214

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +         L  +  ++  ++   +   L               
Sbjct: 9   INILVVDDHSLIFDGLRGCLAPYPELNLIGSVEDGLAVYEKCLKL--------------- 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D++R +     +           +                   
Sbjct: 54  RPDLVFMDLKLPGMGGLDVIRQLRQRWPEM--------MIIMLTGTIEEKSAREALDVGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y       + +   +  +      I          L   Q +      V  G    LT
Sbjct: 106 NGYVLKNSPKSTLLAAIKCVSKGKNFIDPS-------LDEQQIDAL--SGVVDGDIPLLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I EG+ + +IA  L I   TV  +  ++MRK      +  + +  R  +
Sbjct: 157 PREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHWVQRLGL 214


>gi|302184842|ref|ZP_07261515.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|330954520|gb|EGH54780.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 222

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPDLKVVIFTMDDSTDHLEAAISAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIDGLQRVARGEEALNSAVSARL------LRRMTERNTSGAALPETLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|300857851|ref|YP_003782834.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685305|gb|ADK28227.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205581|gb|ADL09923.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330135|gb|ADL20329.1| Two component LuxR family transcriptional [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275816|gb|ADO25715.1| Two component LuxR family transcriptional [Corynebacterium
           pseudotuberculosis I19]
          Length = 225

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 20/217 (9%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 +    E VG +  +          + D ++      D      L        V 
Sbjct: 14  AGVRAEIGGAVEIVGEAGTVSEAVADIDATRPDVVLLDVHMPDGGGVAVLRG------VT 67

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                L   V     + I+        Y + T   A +   +  +     +        +
Sbjct: 68  SPARFLALSVSDAAEDVISVIRAGARGYVTKTISGAELIDAITRVHTGDAVFSPRLAGFV 127

Query: 163 GLLAAYQANMFKSYDVHWGKDFE--------------LTGREVECLTWISEGKTSDEIAV 208
               A    M          D E              LT RE+E L  ++ G T  EI  
Sbjct: 128 LDAFARPDPMGAGVVDSPETDREVEEGKQVSDPIVDALTRRELEVLRLLARGYTYKEIGA 187

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L IS  TV  + ++I+RKT    R     +A   ++
Sbjct: 188 QLFISVKTVETHASNILRKTQQSNRHALTRWAHSRDL 224


>gi|220904084|ref|YP_002479396.1| LuxR family two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868383|gb|ACL48718.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 223

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 11/227 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D    M  +   ++    +  +   + G     L          LD  +   
Sbjct: 3   ICRILLVDDHKLLMEGVRSLLAPYAHLRVVGMALAGGEAVALAASLTPHLMVLDLGMPGM 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +          V      L                     +   +     + 
Sbjct: 63  NGVETARAVLE--------VRPATRILVYTGHEDQRWLPELIDLGIMGHVRKSEPPGVLL 114

Query: 142 IGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             +  +      +           LL   +  + +S     G    L+ RE E    +++
Sbjct: 115 RAIENVRRGEIFLSFSDPGGRLAALLRERRQAVDESGGDGCGDLSALSPREKEIFRLLAD 174

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L IS  TV  +  +++ K    +    +  A+R+ +V
Sbjct: 175 GHSVKAIAGDLHISPKTVETHKYNLLTKLQAGSVGDLVKIAIRHGLV 221


>gi|295096704|emb|CBK85794.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 210

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +   +    +      +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLQKNKNIQVKLKSGDSHEVLDCIR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  ++    F L++ +    KD           LF               
Sbjct: 47  -NHPIDLVILDIEMTGTDGFVLLKRIRNLNKDI--------KVLFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L  I  L +               D 
Sbjct: 98  AGANGFVSKRKDLGEIYNAVEMILTGYSFFPSETLSFINHLGSRTGAAV---------DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + ++I  K   ++    I YA  + 
Sbjct: 149 PLSNREVTVLRYLANGLSNKEIADQLLLSNKTISAHKSNIFSKLGVQSIVELIDYAKAHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|227819439|ref|YP_002823410.1| two-component system response regulator [Sinorhizobium fredii
           NGR234]
 gi|227338438|gb|ACP22657.1| putative two-component system response regulator [Sinorhizobium
           fredii NGR234]
          Length = 226

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 61/227 (26%), Gaps = 19/227 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V       D L  +I  +       +     E +       V  +      LD  +
Sbjct: 16  RIVIVDDHLIVLDALCLLIAAESDWQVVAKCRTAAEAIEF-----VSTEPVDVVVLDLRM 70

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 DLVR +     +    +L            +  E                   +
Sbjct: 71  PEMSGLDLVRRLHGDRPELICVIL--------TADISDEELAEAMRNGVRGVVLKEQAPS 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G          +                   K   LT RE+E     +
Sbjct: 123 ALIECIRSVMAGG---TSVVDQSLSAAIERIGKRDVERRSVMQK---LTPRELEISRLAA 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG  S EIA  LGI+  TV  ++ S+  K    TR      + R  +
Sbjct: 177 EGLRSREIAARLGITPGTVKLHLHSVYSKLDITTRVELANISQRLQL 223


>gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 208

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 67/242 (27%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + L  +       +S        +  +                            
Sbjct: 1   MHPIRVALVDDHSIVRRGLSAYFAAQPDITIVGEAASGEEALHHAATW------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D IV        +  +  + + K   +L +   +    +      I    
Sbjct: 49  --------QADVIVMDVLMPGGIDGIETTRRLKR--LLPQTQIIILSGYADDARVIGALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y        ++   +        I     +  I                      
Sbjct: 99  AGAITYVEKDSQPEQLLEAVRGAAQGKAIFEPALMQRIL------------QAQTMRSSD 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  ++EG T+ EIA  L +   TV  ++ASI+RK     R+ A  YA+R+ 
Sbjct: 147 ALTEREGEVLKLLAEGLTNAEIAARLSVGEETVKTHVASILRKLGLAHRTQAAIYALRHG 206

Query: 245 IV 246
            V
Sbjct: 207 WV 208


>gi|114563815|ref|YP_751328.1| response regulator [Shewanella frigidimarina NCIMB 400]
 gi|114335108|gb|ABI72490.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 214

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRILEDERGIKVIGEAPD---------------GETAVQWSRQN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          ++    +   P                
Sbjct: 47  EADVILMDMNMPGMGGLEATRKI--LRYQPDAKIIVLTVQTEDPF------PTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +       +A  Q N              L+
Sbjct: 99  SGYLTKGSTSPEVLRAITQVARGQRYLSPEIA---QQMALSQFNH-----SDENPFSSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITNGEKVNDISEKLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRYKML 209


>gi|330503309|ref|YP_004380178.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328917595|gb|AEB58426.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 210

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 63/219 (28%), Gaps = 16/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       +   ++    +  + E   G    L VR        +D  +      +  
Sbjct: 3   VDDHDLVRTGITRMLADIEGLQVVGEACTGEEALLKVRELKPDVVLMDVKMPGIGGLEAT 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +  S        ++      C      P            Y +    +  +   + L+
Sbjct: 63  RKLMRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGAAGYLTKGAALDEMVQAIRLV 114

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
           F   R I      ++ L +                   L+ RE++    I+       I+
Sbjct: 115 FAGQRYIDPQIAQQLALKSF-------QPQTSGSPFDLLSEREIQIALMIANCHKVQNIS 167

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 168 DKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMV 206


>gi|238060304|ref|ZP_04605013.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|330469356|ref|YP_004407099.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|237882115|gb|EEP70943.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|328812327|gb|AEB46499.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 222

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 64/242 (26%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             +  ++L  + +     + H   R      +           +  AL            
Sbjct: 8   ATRTKVLLVDDHDLIRKGLRHAFERDRQFEVVGEAATAAEGVRQAGAL------------ 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  S       VL         ++    +      
Sbjct: 56  ---QPDVVIMDLRLPDGSGLEATRALRKSSASMGIVVL--------TMYAGDDQLFGALE 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   T     +                        LA                  
Sbjct: 105 AGASAFVPKTAPADEVVAAARHAASSPSAFTAAD------LAEAMKRRLAPSGP------ 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L  +++G +   IA  L +S +T   +I+ +  K     R+ A+  A+R  
Sbjct: 153 QLSPREGQVLRLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLG 212

Query: 245 IV 246
           ++
Sbjct: 213 LL 214


>gi|284041267|ref|YP_003391197.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820560|gb|ADB42398.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 213

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       ++ L    D +  +            +                  
Sbjct: 1   MRILVAEDHRILLDSIAMLLASIDGVEVVSKHTNGQQVLTALE--------------IEP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L       +  + +  ++        V               
Sbjct: 47  DINLVVSDVQMPVMGGIEL-----TIQLRQRFPQVKICL---LTVADQPEAIKEAIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   + + + +   L  +    +      +  + L       +    D    +   ++
Sbjct: 99  DGYVLKSAERSELETALRTISKGNKFYSEQVM--LQLANEVGIEVIPDLDKP--QKITIS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I++  +  +IA  L IS  TV  +   +M+K   +T  G + YA++ N+V
Sbjct: 155 KRELDVLKLIAQEFSGTQIAEKLFISPTTVETHRKHLMQKLGVQTTIGLVKYAIKFNLV 213


>gi|327485685|gb|AEA80091.1| Nitrate/nitrite response regulator protein [Vibrio cholerae
           LMA3894-4]
          Length = 201

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L          LD  +      D +  +   E D           +   V  + 
Sbjct: 30  GAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSA 81

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         + Y     +  ++   L       +                      + 
Sbjct: 82  ADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNR 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 131 EHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190

Query: 237 IAYAVRN 243
               +  
Sbjct: 191 TILYLER 197


>gi|293400727|ref|ZP_06644872.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305753|gb|EFE46997.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 205

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 27/219 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEY----------VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           R++ +D        +  + E            G     L R        +D  +      
Sbjct: 2   RILIVDDDALVCSSLKTILEAKNIQVDAIGNSGEEAIALYRQYQSDVLLMDIRMEKMNGV 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +             +   LF   F      +         Y     +   I   L
Sbjct: 62  EASEAILKE--------FPQARILFLTTFSDDEYIVKALKLGVKGYILK-QNFDSIVSAL 112

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    +   + + ++  L                + ++L  RE + ++ ++ G  + 
Sbjct: 113 EAVYANQNVFNTEIIEKLPDLLN--------NRDTAKEQYDLNDREQQFISLVANGLNNK 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L +S  TV NY+++++ K   + R+    +  ++
Sbjct: 165 EIAETLFLSEGTVRNYLSNLLDKLGLRDRTQLAIFFYQH 203


>gi|224368482|ref|YP_002602645.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691198|gb|ACN14481.1| two component transcriptional regulator (LuxR family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 212

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ------EQKLDSIVSSDWPFDL 86
           + R++  D        +  + E  G    +    D         E K D  V       L
Sbjct: 1   MIRVLLADDHKIVREGLRRIIEESGEMEVVAEAEDGTGAIKGALEAKPDVAVIDISMPGL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     +    L         +       I         Y +      ++   +  
Sbjct: 61  DGLEVTDILKRNAPDLPVL---ILTMHDEDQYVIKAVETGAMGYVTKQSAPEQLVDAIKK 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L   GR +       + L            D        L+ RE++ L  ++ G T+ EI
Sbjct: 118 LHSGGRYLTEKASEALAL-------RVVRGDKFRSATDSLSMRELQVLRKLALGHTNHEI 170

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A    IS  TV+ Y A +++K   +  +    +A++N IV
Sbjct: 171 AASYNISVKTVDTYRARVLKKLNLRNNADLSRFAIKNRIV 210


>gi|161526221|ref|YP_001581233.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189349065|ref|YP_001944693.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160343650|gb|ABX16736.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189333087|dbj|BAG42157.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 218

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       +  L     +   +   +        +   T              
Sbjct: 3   LNILLVDDHAIVRQGICQLLVDRGIAREVTEAENGADALAAVDRQT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 49  -FDVILLDISLPDTNGIEVLKRLKRK--------LPRTPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum]
          Length = 233

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 21/210 (10%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLVRCMALS 93
             ++        +  +     +   LL      +  Q Q+L+ +++  +P D +      
Sbjct: 32  GHIETENELKAFLDQVLSQAPSERLLLALGRLNNQNQIQRLERVLNVSYPSDWLDQYMKE 91

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
              ++  +L+       PV                      F     + G+         
Sbjct: 92  NYAQHDPILRIHLGQ-GPVMWEE------RFNRAKGAEEKRFIAEATQNGM---GSGITF 141

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                   IG +         S       +  L+ RE +   W+S GKT+ EIA IL IS
Sbjct: 142 SAASERNNIGSIL--------SIAGREPGNMPLSQREYDIFHWMSRGKTNWEIATILDIS 193

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             TV  ++A+++RK     R+ AI   +  
Sbjct: 194 ERTVKFHVANVIRKLNANNRTHAIVLGMHL 223


>gi|310824729|ref|YP_003957087.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309397801|gb|ADO75260.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 200

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 38/235 (16%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +       +S L  + + +  +                    G     L R      
Sbjct: 1   MVDDHPLIRDGLSALIRQCEDMRLVAEAAD---------------GKRAVELFREHRPDV 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +        +R +                 L   +     +           Y 
Sbjct: 46  TLMDLGLPVMDGMSALRAIRRE--------FPDARILVLTLRQGDEDVHQAIQAGARGYL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +    R +  +    +                    D  LT RE 
Sbjct: 98  LKGATGPEILDAIRAVHRGLRHVAPEAAAMLVERVG---------------DSPLTERER 142

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  ++ G+++ +IA  L I+  TV  ++  I+ K     R+ A+  A+R  ++
Sbjct: 143 QTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGLI 197


>gi|302869001|ref|YP_003837638.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315504528|ref|YP_004083415.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302571860|gb|ADL48062.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315411147|gb|ADU09264.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 222

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 64/242 (26%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             +  ++L  + +     + H   R      +           +  AL            
Sbjct: 8   ATRTKVLLVDDHDLIRKGLRHAFERDRQFEVVGEAATAAEGVRQAGAL------------ 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  S       VL         ++    +      
Sbjct: 56  ---QPDVVIMDLRLPDGSGLEATRALRKSSASMGIVVL--------TMYAGDDQLFGALE 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   T     +                        LA                  
Sbjct: 105 AGASAFVPKTAPADEVVAAARHAASSPSAFTAAD------LAEAMKRRLAPSGP------ 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L  +++G +   IA  L +S +T   +I+ +  K     R+ A+  A+R  
Sbjct: 153 QLSPREGQVLRLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLG 212

Query: 245 IV 246
           ++
Sbjct: 213 LL 214


>gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus
           elongatus PCC 7942]
 gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus
           elongatus PCC 7942]
          Length = 235

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 77/227 (33%), Gaps = 16/227 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           A ++ +D        + A  E  G     +      W+  Q+ + D +++       V  
Sbjct: 8   AEILLVDDEPGLREAVQAYLEDSGFRVRTAANAQEGWEQLQQARPDLVITDVMMPR-VDG 66

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI--------- 140
                + +  +  +    +         + I       + Y +  FD   +         
Sbjct: 67  YQFLAQLRGDDRFKALPVILLTARGMTGDRIQGYEAGCDDYIAKPFDPDELVVRVENLLR 126

Query: 141 --RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             R  +  +   G   L +   ++  + A      +          +LT RE   L  ++
Sbjct: 127 RRRETIAAVADTGNPDLAEVARQVAEIRAMLQQKPQLQTQATPLALDLTPREESVLKLVA 186

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G  + EIA  L  S   +  Y++ +  KT T +R+  + +++ + +
Sbjct: 187 QGLMNKEIARELDTSVRNIEKYVSRLFSKTGTNSRTELVRFSLEHGL 233


>gi|124268086|ref|YP_001022090.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124260861|gb|ABM95855.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 212

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 67/222 (30%), Gaps = 16/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   ++  M +  + E   G     LVR        LD  +      
Sbjct: 5   VAIVDDHAIVRAGLRQYLAEQMDLQVVAEASNGREAMDLVRAGGIDVLILDVSMPDQNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +           L        P                + Y +   D   I   +
Sbjct: 65  DVLSGIRA-----RAPELPVLILSSYP---ETHYATALLKQGASGYLNKECDPQEILTAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L    R I           A   A+             +L+ RE++    +++G+T  
Sbjct: 117 RTLSRGRRYITPAV-------AELLADQLGGGKAEGLPHEQLSERELQVFLRLAQGETIG 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 170 AIGESLSLSVKTVSTYRTRVMEKMKLASNSDLTYYALKNGLI 211


>gi|170725332|ref|YP_001759358.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169810679|gb|ACA85263.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 209

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 31/231 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++++  +       +  L T              +     +                 + 
Sbjct: 6   SVLVVDDHPLLRRGICQLITSDSDFTLFGEAGSGLDALSAIE---------------DNE 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +                 +   V     + I       +
Sbjct: 51  PDIILLDLNMKGMTGLDTLNALRQEGVT--------SRIVILTVSDAKQDVIRIIRAGAD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L       R+I       +           K           LT 
Sbjct: 103 GYLLKDTEPDLLLEKLKNAMQGHRVISESVEEYLY--------ELKDAADEDDWLSNLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE++ L  ++EGK++  I+ +L IS  TV  ++ +++RK   K+R+     
Sbjct: 155 RELQILEQVAEGKSNRMISELLHISEGTVKVHVKNLLRKGHAKSRTEMAVR 205


>gi|77461347|ref|YP_350854.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77385350|gb|ABA76863.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 209

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDLQVVGEASNGEQLLETLRNV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIPRIRALNHPP--------AILVLSMHDEAQMAARALKIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  +    +                       L+
Sbjct: 99  AGYATKDSDPALLLTAIRKVAAGGRYIDPELADRMVFEVGLTDARPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHKLL 209


>gi|167565819|ref|ZP_02358735.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572912|ref|ZP_02365786.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 215

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       + H+ + +            +S    M +                
Sbjct: 2   IKVLIADDHALVRDGLRHILSSTPGFEVAGEACDGISTIELMRSA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      DL++ +   +             L   +               
Sbjct: 47  DAQVLVLDLSMPGRNGIDLIKQIKEEKPT--------LRILVLTMHAEQQYASRAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   L  +   G  +       +                       L+
Sbjct: 99  SGYMTKESASAELVGALTKIAAGGVYVSLAMAERLAQSLNEPTESL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE +    I+ G+T  EIA  L +S  TV+ Y A I+ K      +  + YA+R+ +
Sbjct: 151 DREFDVFRRIAAGETITEIAQALNVSAKTVSTYKARILEKMQMPHDAALVRYAMRHKL 208


>gi|152966610|ref|YP_001362394.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151361127|gb|ABS04130.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 215

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 14/226 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V       + L  +I     +             G     L+         +D  +  
Sbjct: 1   MIVDDQEMIREGLRTIIGAHPDLQVAAVAGD-----GLEALKLLESTAVDVVLMDIRMPG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +  +          +        F      +       + + S       +
Sbjct: 56  IDGVEATRRIRATRSS------AQVRICVLTTFDNDENVLRALKAGADGFLSKGAGPTEL 109

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISE 199
             G++ +   G  +    L    ++     +     D    K F  LT RE E +  I  
Sbjct: 110 TAGILDIAGGGSALSPTAL--SAVVTHVAEDNSVPDDPQALKLFAALTAREREVVEAIVT 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G  + +IA  + +S  TV  +    M K   + R+  ++ AVR  +
Sbjct: 168 GLDNQQIAEAMFVSPFTVKTHANRAMSKVGARDRAQLVSMAVRAGM 213


>gi|288916240|ref|ZP_06410620.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288352431|gb|EFC86628.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 189

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                +    F              + +         +   + ++     ++       +
Sbjct: 42  PATRVIILTSFDLDEYVFAGLRAGASGFLLKDAPPEDLLTAIRVVAAGDALLSPAATRRL 101

Query: 163 GLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
             +  + A      D             LT RE + LT ++ G ++ EIA  L ++ +T+
Sbjct: 102 --IDRFTATPPAEGDAPEPSPSRQLLSRLTDRERDVLTRVARGMSNAEIAADLVLATSTI 159

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ +++ KT+++ R+  + +A  + +
Sbjct: 160 KTHMTNLLAKTSSRDRTQLVIFAYESGL 187


>gi|167839791|ref|ZP_02466475.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 215

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 65/228 (28%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L  ++                   G S   L+R    Q   LD  
Sbjct: 2   IRVLIADDHALVRDGLRHILGSATGFEVVGEA-----CDGVSTIELMRSIDAQLLVLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL+R +   +             L   +               + Y +     
Sbjct: 57  MPGRNGIDLIRQIKEEK--------PALRILVLTMHAEQQYASRAFRAGASGYMTKESAS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +   G  +       +       A               L+ RE +    I
Sbjct: 109 AELVGALTKIAAGGVYVSLAMAERLAQSLNEPAESL--------PHQRLSDREFDVFRRI 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G+T  EIA  L +S  T++ Y A I+ K      +  + YA+R+ +
Sbjct: 161 AAGETITEIAQALDVSAKTISTYKARILEKMQMPHDAALVRYAIRHKL 208


>gi|44491938|gb|AAS47489.1| GacA [Pseudomonas fluorescens]
          Length = 213

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +      ++   L               
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAESGEEALIKAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++ + +    N              L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN--------DSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|119358450|ref|YP_913094.1| two component LuxR family transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355799|gb|ABL66670.1| two component transcriptional regulator, LuxR family [Chlorobium
           phaeobacteroides DSM 266]
          Length = 203

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 70/241 (29%), Gaps = 41/241 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     +S L    D    +                    G     L+  +
Sbjct: 2   ITIIIADDHKIFRQGLSRLLADDDRFKLLGEASN---------------GKEALNLIWKE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      ++V  +  +  +           +   +   +           
Sbjct: 47  KPQVAVLDLSMPRPDGLEVVSSIRAAHSNTRC--------IILTMKDDIETVRRALESGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y         I   ++ +      +                  F+     +    E  
Sbjct: 99  YGYVLKEAAYEEIAEAIVKVADNKLYL----------------GRFQDNPNLYASCCEGQ 142

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  +  G TS +IA  L IS  TV  +   IM K   +T +G   YA  + +
Sbjct: 143 LTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGYAREHGL 202

Query: 246 V 246
           +
Sbjct: 203 I 203


>gi|332671209|ref|YP_004454217.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340247|gb|AEE46830.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 207

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 36/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S ++ +      L  +                    G     L    
Sbjct: 2   IRVLLADDHPVVRSGLAGMLGLEPDLEVVGEAAD---------------GEQAVALAAEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +        L     L    + T  + +       
Sbjct: 47  RPHLVLMDLRMPVLDGAAATARITGT--------LPGVRVLVLTTYETDTDILRAVEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++  G+         +       +                  G+   LT
Sbjct: 99  TGYLLKDTPRDQLVAGVRAAARGESALSPSVARRL-------------VQQVRGEQERLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++  I   L I+  TV  ++     K     R+ A+  A+   I+
Sbjct: 146 AREQEVLAGVARGLSNAGIGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 204


>gi|291301148|ref|YP_003512426.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570368|gb|ADD43333.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 54/221 (24%), Gaps = 14/221 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L         +  + E  G  +   L          +D  +     
Sbjct: 3   RVLLVDDQRLIRAGLRMLCEPAADIEVVGEADGGQAAVRLAGELCPDLVLMDLRMPGMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +                 +    F          A     +         +   
Sbjct: 63  ITATQRILAER--------PSTRVVALTTFDDDDHLYPALAAGACGFLVKDTSPNELLEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +              +  I   A           V      +LT RE E L  +  G  +
Sbjct: 115 IRKAADGDTPFSAGVVKRIVDSAVRA-----RASVPTATLPKLTTREREVLALVGAGYAN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +IA  L +   TV  +IAS+M KT    R      AVR+ 
Sbjct: 170 VDIAERLHLGVTTVKTHIASLMTKTGCSNRVRLAVLAVRSG 210


>gi|302540779|ref|ZP_07293121.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458397|gb|EFL21490.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 239

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + + L  + E     +  L      L+ +                          + 
Sbjct: 17  AEPIGVFLLDDHEVVRRGLRDLLDAEPDLSVVGEAASARE-----------------AIA 59

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R    +       V      +      ++   +    L     L    F           
Sbjct: 60  RAPAVRPHVAVLDVRLGGSGEGADHEGIAVCRELRARLPGLACLMLTSFDDDEALFDAIM 119

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     + + +   +  +     ++       +       A +         +  
Sbjct: 120 AGAAGYVLKQINGSDLVSAVRTVAGGRSMLDPGATARV------MARLRGPQPSTPDELE 173

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L+ RE E L  I +G T+ +IA  L ++  TV N I+SI+ K     R  A   A R
Sbjct: 174 RLSPREREILELIGDGLTNRQIAERLFLAEKTVKNRISSILSKLGVGRRIQAAVIAER 231


>gi|326624070|gb|EGE30415.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 198

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 17/203 (8%)

Query: 38  PLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   +      + + E   GAS   L          LD  +      D +  +      
Sbjct: 4   GIRQLLELDPAFHVVAEAGDGASAIDLANRIEPDLILLDLNMKGLSGLDTLNALRRDGVT 63

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                      +   V  +  +         + Y     D   +   +      G++   
Sbjct: 64  --------AQIIILTVSDSASDIYALIDAGADGYLLKDSDPEVLLEAIRKGANGGKVFSD 115

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                            + +         LT RE++ L  +++G ++ +IA +L IS  T
Sbjct: 116 RV--------NEYLRERERFGAQEDPFSILTERELDVLHELAQGLSNKQIASVLNISEQT 167

Query: 217 VNNYIASIMRKTATKTRSGAIAY 239
           V  +I +++RK   ++R  A   
Sbjct: 168 VKVHIRNLLRKLNVRSRVAATIL 190


>gi|327483910|gb|AEA78317.1| BarA-associated response regulator UvrY [Vibrio cholerae LMA3894-4]
          Length = 188

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 11/174 (6%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D I+       +    A  +  +    ++    +   V    P            Y +
Sbjct: 21  HADVILMDMNMPGIGGLEATKKLLRVNPDIKI---IVLTVHTENPFPTKVMQAGAAGYLT 77

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   + ++    R I  +   ++ L     A+             +L+ RE++
Sbjct: 78  KGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASE--------NPFADLSERELQ 129

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  I++G+   +I+  L +S  TVN+Y   +  K            A+R  I+
Sbjct: 130 IMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRYGIL 183


>gi|260906853|ref|ZP_05915175.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 209

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 61/235 (25%), Gaps = 32/235 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  + E      S +    + +  +                    G     L + +  
Sbjct: 1   MALVDDQEMVRMGFSLILDADESITVVGQASD---------------GVDAVALAKREHP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +        +  +                 +    F          AG  + 
Sbjct: 46  DVILLDIRMPKLDGLAALPRLT-----------PISKVIMVTTFDDDDYVDAALAGGASG 94

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +         +   +        +I      ++       +   +       +   L+ R
Sbjct: 95  FLLKDAGPDLLLAAVRAAANGDALISPSLTLDL------LSRRAQDTRTGEDRLAGLSER 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E +    ++ G+T+ EI   L IS  TV +++ SI  +   + R    A    + 
Sbjct: 149 ENDVARLVARGRTNQEICAELYISLGTVKSHLGSIQTRLGARNRVEIAARMWESG 203


>gi|89891781|ref|ZP_01203283.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
 gi|89515936|gb|EAS18601.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
          Length = 218

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 1   MNFEIQ-QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           M  +I  ++N++L          +  L   S  L     ++        +          
Sbjct: 1   MYLQIPLKMNVLLADHHPIFRRGIKSLMKDSKRLRFNGKVEDGEMLLEGIKE-------- 52

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                     +   L+  + +      +R +           L+       P        
Sbjct: 53  -------HKPELLILEIDLPNSNGAGALRDIRAHF-----PDLKVLIVSCHP---EEIYA 97

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I+      N Y + T     I+  +  +      +          +     +  K+    
Sbjct: 98  ISAIKAGANGYIAKTKSSKEIKKAIETVISGETFLSDS-------IKEVMNSKSKTGKSV 150

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +  +L+ RE+E L  +S GK + EI+ IL I+  TV+ Y   +++K      +  I 
Sbjct: 151 TLRYKKLSAREIEVLNLLSRGKRNKEISQILSINEKTVSTYKTRLLKKLNVDNIADLIH 209


>gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 205

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           VN++L  +     + +  +      +  ++                              
Sbjct: 2   VNVMLIDDHPVVRAGLRAILNAFSDVEVVMEGSTGADV-------------DKLFTDDAP 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         + +  +              L    + T  + +       
Sbjct: 49  QVDAVVCDIQMPGMDGIAATKRVVEAGGPP---------VLILTTYDTQADILAAVEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   ++      R +  + +  +                       L+
Sbjct: 100 MGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQE-------------SLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +S G ++ E+A  L IS  TV  ++  I +K   +TR+ A+  A    ++
Sbjct: 147 TRELEILRALSTGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205


>gi|326776576|ref|ZP_08235841.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656909|gb|EGE41755.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 220

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 64/222 (28%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +S    +  + E   G +   L R        +D  +     
Sbjct: 4   RVLVAEDQSAVRAGLVLILSSAPDIEVVAEAGDGEAAVRLARELRPDLVLMDVQMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +   E             L    F              + +     D   +   
Sbjct: 64  VAATRQVVGEELAD---------VLVLTTFDLDEYVFGALRAGASGFLLKNTDARDLLEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I       +    A  +               LT RE E L  + EG ++
Sbjct: 115 VRTVARGEGLIAPAVTRRLIAEFAGASPRHGRRTADPAVLDALTRREREVLGCLGEGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA+ L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 175 AEIALRLSMAEATVKTHVSRVLGKLELRSRVQAAVLAQELGI 216


>gi|182437087|ref|YP_001824806.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465603|dbj|BAG20123.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 214

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 61/237 (25%), Gaps = 28/237 (11%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  ++    + V  +  R   +  +                    G     L R    
Sbjct: 1   MLIADDEAMVRAGVRAILARDPHVEVVAEAGD---------------GHEAIALTRAHRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +           +                 +    F              + 
Sbjct: 46  DVVLMDIRMPGLDGLTAAARLHRES--------ATVGLIMLTTFGQDEYVTRALEEGADG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     D   +  G+  +   G  +       +                       LT R
Sbjct: 98  FLLKADDPRELLNGVRAVGAGGAYLSPRVAGRVI-----AGMRAHRAAHPHRSLARLTER 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  +  G ++ EIA  L +   TV  ++++++ K   + R  A   A   ++V
Sbjct: 153 EREVLAGLGAGLSNAEIASRLHLVEGTVKAHVSAVLAKLGARNRVEAAIAAYEADLV 209


>gi|308067901|ref|YP_003869506.1| nitrate/nitrite response regulator protein narL [Paenibacillus
           polymyxa E681]
 gi|305857180|gb|ADM68968.1| Nitrate/nitrite response regulator protein narL [Paenibacillus
           polymyxa E681]
          Length = 212

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 70/225 (31%), Gaps = 25/225 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     LA +I +   V +        E +     +++         LD  ++ 
Sbjct: 4   VIVDDHPLVRKGLAAVISMQPNVQFAGEAQNQQEAL-----VVIEETDPDLVLLDLKLAD 58

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +   D+++               R   +      T  + +       + Y         +
Sbjct: 59  ESGLDIIKIARGRGF--------RSKFILLTSSATREDFLKAEEASVDGYVLKEALPEEL 110

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + L+    +      L           N  +    +   D  LT +E E L  + +G
Sbjct: 111 IYAIHLVNKGRKYYDPAILE----------NKLREDAGNLSDD--LTPKEKEVLVELGQG 158

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L IS  TV  +++ I+ K     R+ A  YA    +
Sbjct: 159 ACNREIASRLFISEFTVKKHVSQILAKLRLADRTQAALYANAIGL 203


>gi|226225820|ref|YP_002759926.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089011|dbj|BAH37456.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 213

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 61/228 (26%), Gaps = 26/228 (11%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         LA ++ LD                G +   L+  +      LD  +
Sbjct: 6   RVVLVDDHSLVRRGLAVLLRLDGRHDVVGEAGT-----GEAAVPLIEAERPDLVILDLNM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + +R +                 L   +           +   + Y        
Sbjct: 61  PGIDGLETLRRVRAKGLT--------TRVLVLSMHDETHLVGQALSAGADGYLLKDSMDD 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +    R +                           +   LT RE E L  I+
Sbjct: 113 ELFFAIESVLRGQRYLAAAIDR-------------ARLQESRMRPVSLTAREREVLQLIA 159

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G T+  +A  L IS +T   + A++M+K     +   +  A    ++
Sbjct: 160 NGLTTSAVAEALNISPHTATRHRANLMQKLNVHNQVELVRIAASQGLI 207


>gi|330808750|ref|YP_004353212.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|29826222|gb|AAO91848.1| GacA [Pseudomonas fluorescens]
 gi|327376858|gb|AEA68208.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 213

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    +  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLIKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++ + +    N              L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN--------DSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|4680222|gb|AAD27580.1|AF115381_1 response regulator GacA [Pseudomonas chlororaphis subsp.
           aureofaciens]
          Length = 213

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    +  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLIKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++   +                   L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQ--------PSSDSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|256786258|ref|ZP_05524689.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289770149|ref|ZP_06529527.1| response regulatory protein [Streptomyces lividans TK24]
 gi|289700348|gb|EFD67777.1| response regulatory protein [Streptomyces lividans TK24]
          Length = 223

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 68/238 (28%), Gaps = 19/238 (7%)

Query: 12  LNREDEQRTSFVS-HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLF 69
           +     +R +     +    D +     L   +     +  + E   G     L      
Sbjct: 1   MTDPAARRPASAPVRILVCDDHVVVRAGLLALLDSAPGIEVVGEAGTGEEALALAARLTP 60

Query: 70  QEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
               +D  + +     +  R +  +         + P  L    + T  +          
Sbjct: 61  DVVLMDLQLGAGIDGVETTRRLTAA--TGADPA-RTPHVLVLTTYDTDADITRAIEAGAT 117

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +         +        G +A       +           LT 
Sbjct: 118 GYLLKAERPEELFAAIHAAAQGRTALS-------GPVAGRVMANLRKPRPA------LTD 164

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 165 RERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 222


>gi|262202074|ref|YP_003273282.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085421|gb|ACY21389.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 218

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 30/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V   L  + E     +  L   +  +  +          + + A T             
Sbjct: 6   PVRAFLVDDHELVRRGLRDLLGTAGDIEVVGEAASVREAKVGISATT------------- 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +L R +  +    +         L    +      +      
Sbjct: 53  --PDVAVLDVRLPDGNGVELCRDVRAANPSIHC--------LMLTSYADDDALLAAVLAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +  +   G ++       +           +          EL
Sbjct: 103 ASGFVLKQILGHNLVAAVRTVGRGGSLLDDRSTAAL-------LAKLRDGKDRPDPLAEL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T +E E    I EG T+ +IA  + ++  T+ NY++ I+ K   + R+     A + 
Sbjct: 156 TSQEREVFNLIGEGMTNRQIAERMFLAEKTIKNYVSRILAKLDMQRRTQVAVMATKL 212


>gi|194467990|ref|ZP_03073976.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
 gi|194452843|gb|EDX41741.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
          Length = 217

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 33/242 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++          V +L  + D    +      +                         
Sbjct: 3   RVLVADNYPIIRMAVKNLVEQLDNFKVIAEEATGID--------------------ASLR 42

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAG 125
            ++  +D I+              +       + +        +F +             
Sbjct: 43  VEQGDIDIIIMDLMMPPG-----ENGLITIKRIHEHFPNTKIIIFSSRSEPQYINQAIYN 97

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             N Y   +     +   L       + +     + +  LL     +M      +     
Sbjct: 98  GANGYIFKSSSPKELVHALRHAIDGEKYLDNNIMVTKKDLLVIKGGSMHFDLGNYIA--- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +  + YAV++ 
Sbjct: 155 -LSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQ 213

Query: 245 IV 246
           +V
Sbjct: 214 LV 215


>gi|37676721|ref|NP_937117.1| response repressor in two-component regulatory system with UhpB
           [Vibrio vulnificus YJ016]
 gi|326424246|ref|NP_762471.2| transcriptional regulatory protein UhpA [Vibrio vulnificus CMCP6]
 gi|37201264|dbj|BAC97087.1| response repressor in two-component regulatory system with UhpB
           [Vibrio vulnificus YJ016]
 gi|319999632|gb|AAO07461.2| Transcriptional regulatory protein UhpA [Vibrio vulnificus CMCP6]
          Length = 206

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 59/220 (26%), Gaps = 27/220 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +       ++ +       + +         LD  ++
Sbjct: 8   VALVDDHVIVRSGFAQLLNLEADICVVGEFGSVADAR-----IGLPACKPDVVILDISMA 62

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                 +   V  +              Y S       
Sbjct: 63  DESGLTLLSEI---------PSGIAC--IMLSVHDSPAMVEKSLKLGAKGYLSKRCSPDE 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +      G  +  D            A    + +       +LT RE E    ++ 
Sbjct: 112 LVQAVRTSAAGGCYLTPD-----------IAMKLATPNDKATSLTQLTRRENEVCQLLAR 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G     IA  LG+S  TV+ + A+ + K   K        
Sbjct: 161 GLDVKSIAAELGLSHKTVHVHRANAIDKLGVKNNVELAKL 200


>gi|22127903|ref|NP_671326.1| two-component system response regulator [Yersinia pestis KIM 10]
 gi|21961040|gb|AAM87577.1|AE014004_15 response regulator [Yersinia pestis KIM 10]
          Length = 220

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 42/231 (18%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V   + +   S  + L +  + +  +            +  L                
Sbjct: 28  RVVFIDDHDIVRSGFAQLLSLEEDIQVVGEFSSAKQARAGLPGL---------------Q 72

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +  +   DL++ +                 +   +  +     T       
Sbjct: 73  ANICICDISMPDENGLDLLKGLPS-----------GMGVIMLSMHDSPALVETALERGAR 121

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S       +   +  +   G  ++ +   ++  +A                   LT 
Sbjct: 122 GFLSKRCKPEDLISAVRTVGSGGVYLMPEIAQQLARVAV----------------DPLTR 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE E    ++EG    EIA  LG+S  TV+ + A++  K            
Sbjct: 166 REREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 216


>gi|306820840|ref|ZP_07454463.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551112|gb|EFM39080.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 221

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 79/246 (32%), Gaps = 27/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + +++  + E     +S +    + +  +      +     +  +        
Sbjct: 1   MYMHSDAIKVMIVDDHELIREGISKILDMENDIDIIFKAKSGIEALEALKDV-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +S     D ++ +  S          +   +   V+  +    
Sbjct: 53  -------KPDVILLDINMSELNGIDTLKKIKASGS--------KTKIIMLTVYDDVEYIS 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N Y     D   +   + ++   G  I      ++     +  N  K+ +   
Sbjct: 98  QSVNLGANGYVLKDSDSDTLIKTIKIVNEGGSYIQPTLATQLI---KHMTNEKKNTNDKK 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +       +  +  IS G  +  I+  L IS  TV N+++SI++K   + R+    YA
Sbjct: 155 LLELLTRRELI-VMKEISSGLNNKSISKKLNISEKTVKNHVSSILKKLELQDRTQVAIYA 213

Query: 241 VRNNIV 246
           ++N I+
Sbjct: 214 IKNKII 219


>gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
 gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 218

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 10/212 (4%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++ +D        + A+    G S               +++       D+     +  
Sbjct: 7   RILIVDDHALAREGLKAVLTSSGFSVVGEAADGPAAIALTEALCPDVVLMDVRLKGDMDG 66

Query: 95  K---DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                +   +      L   +           A     Y      +  ++  ++ +    
Sbjct: 67  LEATRRIAALGLAARVLMLTLHDLPAYVREALAAGAAGYVLKDTAIDDLQAAIVRVAQGQ 126

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             +  D       L +      +  +        LTGRE E +  I+EG T+ EI   LG
Sbjct: 127 TALPLD-------LVSAAMRAPEPVERDPTALSSLTGREREIVHLIAEGMTNKEIGRSLG 179

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IS  TV  ++  ++ K     R+ A   A R+
Sbjct: 180 ISPATVKAHVERLIAKLGVTDRTQAAVLASRH 211


>gi|145595794|ref|YP_001160091.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305131|gb|ABP55713.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 221

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 64/242 (26%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             +  ++L  + +     + H   R      +           +  AL            
Sbjct: 7   ATRTKVLLVDDHDLIRKGLRHAFERDRQFEVVGEAATAAEGVRQAGAL------------ 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +  S       VL         ++    +      
Sbjct: 55  ---QPDVVIMDLRLPDGSGLEATRALRKSSATMGIVVL--------TMYAGDDQLFGALE 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   T     +                        LA                  
Sbjct: 104 AGASAFVPKTAPADEVVAAARHAASSPSAFTAAD------LAEAMKRRLAPSGP------ 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE + L  +++G +   IA  L +S +T   +I+ +  K     R+ A+  A+R  
Sbjct: 152 QLSPREGQVLRLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLG 211

Query: 245 IV 246
           ++
Sbjct: 212 LL 213


>gi|255746558|ref|ZP_05420505.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS
           101]
 gi|262158852|ref|ZP_06029965.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE
           91/1]
 gi|262168521|ref|ZP_06036217.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27]
 gi|255736312|gb|EET91710.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS
           101]
 gi|262023050|gb|EEY41755.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27]
 gi|262029425|gb|EEY48076.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE
           91/1]
          Length = 201

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L          LD  +      D +  +   E D           +   V  + 
Sbjct: 30  GAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSA 81

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         + Y     +  ++   L       +                      + 
Sbjct: 82  ADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNR 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 131 EHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190

Query: 237 IAYAVRN 243
               +  
Sbjct: 191 TILYLER 197


>gi|76817367|ref|YP_337577.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|76581840|gb|ABA51314.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
          Length = 282

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSI 77
           R   +  +    D       L   +          E    A+   LVR    Q   LD  
Sbjct: 64  RFPPMIKVLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLS 123

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L++ +   +             L   +       +       + Y +     
Sbjct: 124 MPGRNGVELIKQIKEEK--------PALRILVLTMHAEQQYAVRAFRAGASGYLTKESAS 175

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + +   +  +   G  +               A               L+ RE +    I
Sbjct: 176 SELVGAVTKVASGGVYVSLAMAERFAQSLNEPAETL--------PHHRLSDREFDVFRRI 227

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G+T  +IA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 228 ASGQTLTQIADELCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHKLI 276


>gi|298242293|ref|ZP_06966100.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297555347|gb|EFH89211.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 197

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 58/191 (30%), Gaps = 20/191 (10%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
            G     L+         +D  ++     + +  +          +L          + +
Sbjct: 21  HGQEAIELITRLKPDVIIMDLRMAKMGGAEAITGLRQLGITI--PIL------VLTTYDS 72

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
             + +         Y        ++   +  +     +   + +  +             
Sbjct: 73  NADILHAVKAGATGYILKDAPREQLFAAIRTVAQGKSVFAPEVVTRLL------------ 120

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +       L+ RE+E L  +  G ++ E A  L IS  T+ +++  I  K   + R+ 
Sbjct: 121 RHMQTPPSSVLSERELEVLALVGRGASNKEAARSLFISEATIKSHLLRIFGKLGVEDRTA 180

Query: 236 AIAYAVRNNIV 246
           A+  A+   ++
Sbjct: 181 AVTVALEKGML 191


>gi|256783050|ref|ZP_05521481.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 263

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 62/240 (25%), Gaps = 26/240 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V IV+  +++     +  +      L  +                    G +   +V   
Sbjct: 32  VRIVIVDDEQLVRMALRLVIDGEPDLTVVAEAAD---------------GDAALAVVDEQ 76

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +                 L    F +    +       
Sbjct: 77  RPDVVLMDVRMPGRDGLDTTRELLARPAPP--------RVLMLTTFDSDDLVLGALRAGA 128

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYDVHWGKDF 184
             +        RI   +  +      +       +   A       +  ++ +    +  
Sbjct: 129 LGFVLKDTPPPRILDAVRTVADGHPALSPAATARVIAAATGPDSSHSRDRTREAARERLS 188

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    +++G  + EIA  L I+  TV  +  S+  K   + R           
Sbjct: 189 VLTEREWETARAVADGLGNPEIAERLHITVATVKAHTGSLFAKLGVENRVQIALLVRDAG 248


>gi|301632710|ref|XP_002945424.1| PREDICTED: response regulator gacA-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 212

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +         +               +                  
Sbjct: 5   IHVVLCDDHAVLRRGIRDTLLDDPDIEVAAEAGGYSELREVLRHA--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  +        ++       P        +       
Sbjct: 50  PCDVLLLDINMPGRNGLEVLASLRETH-----PGIRVLIVSMYP---EDQYALRCLKAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D   +   +  L    + +  +      LLA   A               L+
Sbjct: 102 HGYANKAGDPTHLAAAVHTLAQGRKYLTPEVA---QLLANSLAEPMPEM-----PHETLS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +V
Sbjct: 154 ERELQTLVKIASGKRLSDIADELMLSPKTVSVYRARVLEKLQLTNNAELTVYAIRNQLV 212


>gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
 gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium
           tuberculostearicum SK141]
          Length = 205

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           VN++L  +     + +  +      +  ++                              
Sbjct: 2   VNVMLIDDHPVVRAGLRAILNAFSDVEVVMEGSTGADV-------------DKLFTADAP 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         + +  +              L    + T  + +       
Sbjct: 49  QVDAVVCDIQMPDMDGIAATKRVVEAGGPP---------VLILTTYDTQADILAAVEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   ++      R +  + +  +                       L+
Sbjct: 100 MGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQE-------------SLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  +S G ++ E+A  L IS  TV  ++  I +K   +TR+ A+  A    ++
Sbjct: 147 ARELEILRALSSGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205


>gi|186476266|ref|YP_001857736.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184192725|gb|ACC70690.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 236

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +                 +               +    +       LL    
Sbjct: 24  IRVLIADDHAIVRGGFRQFVADEPDMCVAAEAATGDETIRLVREQADSEPFDVVLL---- 79

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D +R +     ++          L    +      I       
Sbjct: 80  -------DIAMPDKNGIDTLRVIRQLRPEQN--------VLILSGYPESQYAINLLRAGA 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +   +   I   +  +    R +       +                       L+
Sbjct: 125 NGYLNKDCEPGEIVRAIRSVARGHRYLSEAVADTLA--------NSLDRPASSHPHELLS 176

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G+   +IA  L +S  TV+ Y A ++ K      +    YA++N ++
Sbjct: 177 EREFQIFCKLASGQIPTDIADELHLSVKTVSTYRARVLEKMHMTNNADITYYAIKNGLI 235


>gi|196231242|ref|ZP_03130101.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224578|gb|EDY19089.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 242

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 61/235 (25%), Gaps = 28/235 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  ++L  +       ++ +      L               M  L              
Sbjct: 22  QRRVLLVDDHPAIRRGMAAIIDEEPDLTTCGEASTAPMALEAMRRL-------------- 67

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +L++ M   +       LQ                +      
Sbjct: 68  -NPDIAVIDISMPGTNGVELIKLMLAEQ-----PGLQILMLSM---HDESVYALRALRAG 118

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y      +  +  GL  +      +     +   L+     +          K   L
Sbjct: 119 AKGYVMKGEALECVLTGLRKVGEGEIYVSP--KFSDRLIFKTIQSTIAGVASPVDK---L 173

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + RE E L  +  G  S EIA  L +S  TV  + A I  K   K     + +A+
Sbjct: 174 SDREFEVLRLLGRGFGSREIAEELSLSVKTVETHRAHIKEKLGFKEAGEMVRFAI 228


>gi|310659628|ref|YP_003937349.1| transcriptional regulator yhcz [Clostridium sticklandii DSM 519]
 gi|308826406|emb|CBH22444.1| putative transcriptional regulator YhcZ [Clostridium sticklandii]
          Length = 222

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 84/244 (34%), Gaps = 29/244 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++++++  +       +      +  +  +            +               
Sbjct: 1   MKKISVMVVDDHVMMREAIVKGFEGNPCIDVIYQASSGKDALKYLEN------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D      LD I+  +   ++++ +           ++    +      T    I    
Sbjct: 48  NNDSLDVILLDVIMPDENGTEILKLI-----KDLCPNIK---VIMLTSMTTSKYIIKALE 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y +   D  ++   +  +             E+     Y             KDF
Sbjct: 100 NDADGYVTKGVDFNQLLSMIKSVCEGKFCSDEKINDEVCKCREYI-----KQKSKILKDF 154

Query: 185 EL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA-VR 242
           +L T RE E +  IS+GK++ EIA  L +S  TV N+I +I++K   + R+  IA A +R
Sbjct: 155 DLLTRREYEIVGLISQGKSNLEIADDLFLSERTVKNHIHNILKKVNLQDRTQ-IAIANLR 213

Query: 243 NNIV 246
             IV
Sbjct: 214 YRIV 217


>gi|221199698|ref|ZP_03572741.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221208697|ref|ZP_03581697.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221215532|ref|ZP_03588495.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|221164520|gb|EED97003.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|221171508|gb|EEE03955.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221179937|gb|EEE12341.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 218

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       +  L     +   +   +        +   T              
Sbjct: 3   LNILLVDDHAIVRQGICQLLVDRGVAREVTEAENGADALAAVDRQT-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 49  -FDVILLDISLPDTNGIEVLKRLKRK--------LPRTPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
 gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           VS]
          Length = 225

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 82/244 (33%), Gaps = 28/244 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  E     + V+   + ++    ++P D       ++ +              
Sbjct: 5   SKIRVMVIDEQPFFRAGVAQALSDNNF--EILPTDTRKDPLEQVES-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +     L S + +    DL R +  +         +       P    L E I   A 
Sbjct: 49  -KMPDVVLLGSDLIAYSGLDLGRRIVRTF-----PNTKVIILSPNPNDTELFECIRTAAV 102

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAAYQANMFKSYDVHWGK 182
                   +     +   +         I    +        + A   ++          
Sbjct: 103 AC---LKKSSTAEELVETIRRANRGEYPINESLMSSPNLAKQVLAQFQDVSMLGKDASNF 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+ A+  A+R
Sbjct: 160 VTPLTNREKQILTLIANGNTNKQIANSLEISEQTIKNHVSAILRKLNANDRAHAVVVAIR 219

Query: 243 NNIV 246
             ++
Sbjct: 220 CGLI 223


>gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 242

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQ--EQKLDSIVSSDWPFDLVRCMAL 92
           ++ +D        +    E  G      +   D ++  +     ++ SD         AL
Sbjct: 17  ILLVDDEPGLRTAVKTFLEDEGFEISIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYAL 76

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            EK +    L     +F        +         + Y +  FD   +   +  +  +  
Sbjct: 77  LEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYIAKPFDPDELSARVKNVINRQE 136

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-----------TGREVECLTWISEGK 201
            +L++      +  +  A               L           T RE   L  ++EG 
Sbjct: 137 RLLKEAARFADIDVSKMAKQITEIKSMLTDQNPLNQENSIDIPNFTPREASVLQLVAEGL 196

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EIA  L  S   V  Y++ +  KT+T +R+  + YA+ N++V
Sbjct: 197 MNKEIARKLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLV 241


>gi|121595802|ref|YP_987698.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|120607882|gb|ABM43622.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
          Length = 239

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +S  + +  + E   G     LVR        +D  +      D +
Sbjct: 36  VDDHAIVRAGLRQFLSEHVDLRVVGEASNGREAIDLVRVHEIDVLVMDLSMPGQSGLDAL 95

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        I       + Y +   +   I   +  +
Sbjct: 96  AMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECEPKEIVEAIRTI 147

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +       +                      +L+ RE +    +++G+T+ +IA
Sbjct: 148 ALGRRYLTPSVADLLAQQLNR--------KDDAPPHEQLSEREFQVFLKLAKGETAGDIA 199

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 200 KSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNKLI 238


>gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1]
 gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1]
          Length = 245

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 32/257 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  ++     F++ +    +  + +  +            L   +G +  L    +
Sbjct: 3   VKVLIVEDNPVARHFLARVVR--ESFSDVTGMAEAGDLESARRQLG--IGGAPPLPAGSE 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F+   +D  +      +L+  +A              T++   ++              
Sbjct: 59  PFKLVLVDLELPDGNGLELLTELAGHG----------ATKIVTTLYSDDDHLFPALQCGA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------------GLLAAYQANMFKS 175
           + Y         +   L  +      +       +             L +A+    F+ 
Sbjct: 109 DGYLLKEDRFEVLVEELQKIVRGQPPLSPAIARRLLSHFRLGDSGSMALDSAHAPGDFQP 168

Query: 176 YDVHWGKDF------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                   +       LT RE E LT++S+G T  EIA ++GI   TVN++I +I RK  
Sbjct: 169 ARPAAPAVYAEPDHERLTPRETEVLTYLSKGFTIKEIAGLMGIKWFTVNDHIKAIYRKLN 228

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ A   A +  +V
Sbjct: 229 VSSRAEAAVLASKQGLV 245


>gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 226

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 15/228 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D   R+  +   +  +     +T   G     L+          D  +     ++
Sbjct: 6   LIADDDPGIRLA-VKDYLELSGY-SVVTAKNGQEALSLLETYHPHLLVSDIKMPRTDGYE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV  +    + +   V+    +          E I       + Y    F++  +   + 
Sbjct: 64  LVAQVRQRPEFRLLPVVFLTEKST------THERIRGYQAGCDVYLPKPFEMEELGAVIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-------ELTGREVECLTWIS 198
            L  + +I+  +  ++   L   QA + KS       +        ELT RE + L  ++
Sbjct: 118 NLLERSQIMESEWRYKNRQLQEKQAELKKSQPPPPLPELPTLNPPPELTAREKQVLELLA 177

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ +++V
Sbjct: 178 QGLSNVEIGQQLHLSPRTVEKYVSSLLRKTETNNRAELVRFALEHHLV 225


>gi|163761320|ref|ZP_02168395.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162281477|gb|EDQ31773.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 222

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+  ++  +       +    +  D    ++             A             
Sbjct: 1   MTQLKFIIADDHPLFRGAMRQALSGIDASIEILEAGDLEGARREAQA------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +             V+                      
Sbjct: 48  -NPDADLILLDLTMPGVSGLSGLIAFRAE--FSSLPVV------VVSASDDPQTMRRALE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR G+  +   G     D            +          G+  
Sbjct: 99  LGASGFISKSASIEEIREGVRTVLDGGIWTPPDI--------DLGSEHDAEIADLIGRLQ 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   L  ++EG  + +IA  L +S  T+  +++++++K    +R+ A+ 
Sbjct: 151 TLTPQQGRVLGMLAEGLLNKQIAYELSVSEATIKAHVSAVLQKLGVDSRTQAVI 204


>gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 241

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 75/229 (32%), Gaps = 18/229 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
             ++       +    + A     G              +     V + +P   V    L
Sbjct: 14  FEQIKAAANVDAAIRILQA---EYGLDFVTYHLAQTIAAKIDSPFVRTTYPDAWVSRYLL 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRI 142
           +   K   ++++  E   P   +  E                   N Y     D A+ R 
Sbjct: 71  NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 130

Query: 143 GLMLLFP----KGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWI 197
            L L       +   ++R    E   +A                    L+ RE+ECL W 
Sbjct: 131 LLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLHWT 190

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 191 ALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|153820697|ref|ZP_01973364.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           B33]
 gi|126521740|gb|EAZ78963.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae
           B33]
          Length = 195

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L          LD  +      D +  +   E D           +   V  + 
Sbjct: 24  GAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSA 75

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         + Y     +  ++   L       +                      + 
Sbjct: 76  ADIEALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNR 124

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 125 EHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 184

Query: 237 IAYAVRN 243
               +  
Sbjct: 185 TILYLER 191


>gi|119964358|ref|YP_946356.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119951217|gb|ABM10128.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 227

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 63/225 (28%), Gaps = 11/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D L     L   +S    +  + E   G    +           +D  +   
Sbjct: 1   MTRVLLVDDELLAREILRDYLSSDSSIEVVGEASDGRVAVVQAASLRPDVILMDMQMPVM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +           +          F T    +       + Y         I 
Sbjct: 61  DGVAATAQIHAEF-----PDIAILGLST---FSTDRYVVDLLRAGASGYLVKDTLPKEIT 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++         ++     ++             LT +E+E +  +  G 
Sbjct: 113 AAIHTVMAGESVLSSKVTR--HVVTGLAESVPAEVVPDPKLVDALTKKELEVIQLLGRGM 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ E+A  L ++ +T+     ++M K   + R   +  AV   +V
Sbjct: 171 SNREMAAELFVTESTIKARFVNVMEKLGVRDRVQILVAAVEGGLV 215


>gi|152989500|ref|YP_001346140.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150964658|gb|ABR86683.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 210

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +                  
Sbjct: 3   IRVLVAEDHTIVREGIKQLIGMAKDLQVVGEATNGEKLLETLR---------------GT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +            + P  L   +               
Sbjct: 48  PCEVVLLDISMPGVNGLEAIPRIRALS--------EPPAILVLSMHDEAQMAARALKIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 100 AGYATKDSDPALLLTAIRRVAGGGRYIDPDLADRMVFEVGLTDSR--------PPHALLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      + +G   +EIA  L +S  TV+ + A +M+K    + +  + YA+ + ++
Sbjct: 152 EREFSVFERLVQGANVNEIAQQLAVSNKTVSTHKARLMQKLNAHSVADLVRYAMEHRLL 210


>gi|290475594|ref|YP_003468482.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
 gi|289174915|emb|CBJ81716.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus bovienii SS-2004]
          Length = 211

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +    E   G     +          +D  +      
Sbjct: 6   VMIVDDHPIIRHGLKRLIELERELIVTAETDNGEDAINIACQIKPDIILIDLKIHGLSGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D ++ +     D           L         +         N Y     ++  +   +
Sbjct: 66  DTIKSLRRKGLD--------SYVLVLSDSDNRGDIYDAIDAGANGYLLKDIELTPLISKI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +                     +  ++     +LT RE++ L  ISEG T+ 
Sbjct: 118 KKAANGDAVYSE-----------KVYQYLSTRHLYIDPLSKLTKRELDVLKEISEGMTNK 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L IS  TV  +  ++++K  +++R  A    +R+
Sbjct: 167 EIADFLFISEETVKVHTRNLLKKLKSRSRLEATIIYLRH 205


>gi|330809042|ref|YP_004353504.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377150|gb|AEA68500.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 223

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 67/219 (30%), Gaps = 17/219 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     LA++           +        G     L      Q+  LD  +   
Sbjct: 8   LIDDHPLFRKGLAQLFGASDDFEVVGQA-----ASGREGINLAVSLAPQQVLLDLHMPGL 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               ++  +     D           +         E +T      + Y     +   + 
Sbjct: 63  SGLQVLDELRQLRLD--------CQVVVLTASMDRAELLTALRLGASGYVLKETEPDALL 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200
             +        ++       + LLA    ++ +        D   LT RE + L  I  G
Sbjct: 115 SYMRNCHKGAIVLDSTL---VALLADQDESVSRPAYDPDLPDTGNLTEREGQTLALIGAG 171

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++ +I   LGIS  TV  Y+ ++++K +  +R    A+
Sbjct: 172 MSNKQIGRELGISDGTVKIYVRNLLQKFSLHSRLELAAW 210


>gi|302036473|ref|YP_003796795.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300604537|emb|CBK40869.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 55/210 (26%), Gaps = 11/210 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +     +  + E + G   F L          +D  +         
Sbjct: 8   AEDQRLFRQSLRLLLEHERDLIVVGEAMDGRQAFDLAVAHKPGIVLMDVDMPRLDGITAT 67

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +           +     L   V       +         Y     D       +   
Sbjct: 68  RLIRSC--------VPESKVLMLSVHDDDARIVAAVQAGACGYILKDADHQEFLRIIRAT 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                +            A    N  +      G    LT RE E L   + G+++ EIA
Sbjct: 120 DKGEPVRSPFMPDGFAKQAVALVNKQEELSG--GGLSLLTDREHEMLACAAAGRSNKEIA 177

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAI 237
             L +S +TV  ++  I +K     R  A+
Sbjct: 178 DQLCVSLDTVKTHLHHIYQKLRVSGRVEAV 207


>gi|297193677|ref|ZP_06911075.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151880|gb|EFH31398.1| two component transcriptional regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 209

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 56/223 (25%), Gaps = 16/223 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R                ++  D                G       R        +D
Sbjct: 3   EPPRVLLADDQTLVRTGFRLILGADGIDVVAEA------TNGTEAVEAARRTRPDVVLMD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +  R +      +       P  +    F          +   + +     
Sbjct: 57  VRMPEMDGLEATRRILTGAPGE-------PRVIILTTFDLDRYVYAALSAGASGFLLKDV 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +     ++       +                       LT RE+E L 
Sbjct: 110 TPEHLTAAVRTVRTGDALLAPAITRRL---VERFTRRGSDTAALHRDLAALTPRELEVLG 166

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++ G ++ E+A  L ++  TV  ++A I+ K   + R  A+ 
Sbjct: 167 LLARGLSNAELATRLHLAEATVKTHVARILAKLGLRDRVQAVI 209


>gi|282853975|ref|ZP_06263312.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583428|gb|EFB88808.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314923372|gb|EFS87203.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314966719|gb|EFT10818.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981049|gb|EFT25143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315093364|gb|EFT65340.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|327327545|gb|EGE69321.1| nitrate/nitrite response regulator protein NarL [Propionibacterium
           acnes HL103PA1]
          Length = 210

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +     + V+ L      +  +              A  +       L    D
Sbjct: 3   VRVLIADDHPVVRAGVTALLDTDPDIEIVATAATPSQALAAA-ATVDLDLVLLDLQFSSD 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D              + L+                     T  + +       
Sbjct: 62  ADAPSGVDVTRKIRSQPSAPEVLILTNY------------------DTDADILAAVEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       + +                     LT
Sbjct: 104 TGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMV-------------RMRSPRTSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L   ++G ++ +IA  L +S  TV  +++ I  K    +RS A+A A     +
Sbjct: 151 AREFDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|269977244|ref|ZP_06184217.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
 gi|269934547|gb|EEZ91108.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
          Length = 189

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 54  EYVGAS---HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           E VG        LV+        +D  +      +  R +     +           +  
Sbjct: 2   EGVGFDGHHVLDLVQKHHPDVVLMDVEMPKMDGIEATRQIKERFPNLD--------VIML 53

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             F              + + +     A +   +  +   GR +    L  +  +A Y+ 
Sbjct: 54  TNFRHDTWLKEALEAGADGFLTKDAPRADLSAAIKQVAKGGRFMSTKPLNML--IANYED 111

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F     +      LT  E +    + +GK + +IA  L    +T+  ++ SIM+K   
Sbjct: 112 PNFIPDPKYTAGKQALTPAERDVWQEVLKGKGNAQIAKTLHSQESTIKTHMTSIMQKFQV 171

Query: 231 KTRSGAIAYAVRNN 244
           ++R+  + ++ +N 
Sbjct: 172 RSRAELLVFSAKNG 185


>gi|257067453|ref|YP_003153708.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558271|gb|ACU84118.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 255

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/266 (10%), Positives = 63/266 (23%), Gaps = 50/266 (18%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q+V ++L  ++    S +  +   +  +  +       +   ++ AL             
Sbjct: 12  QRVRVLLVDDEALMRSGLRLMIDGAHGIEVVGEAADGQTALDQIAALC------------ 59

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      + +R +                 +    F T    +     
Sbjct: 60  ---PDVVLMDIRMPRMTGLEALRALTARG--------DAVRVVMLTAFDTDEFLLQALRA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV------- 178
               +         +   ++           D L  +  LAA         D        
Sbjct: 109 GAVGFLLKDSPPEEVVRAVLDAAADRSRFSPDVLARLVRLAAAGGGTDGEADASGPGESG 168

Query: 179 --------------------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                                      +T RE +    ++ G  + +I   L +S  TV 
Sbjct: 169 HHGEAAEGGTAGVSRGGADEPPSAPEGITEREWDVARLVARGLANQQIGEQLFMSVATVK 228

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNN 244
            ++  +  K     R       +   
Sbjct: 229 THLGRLYHKLQVTNRVQLAIRVLELG 254


>gi|118588436|ref|ZP_01545845.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Stappia aggregata IAM 12614]
 gi|118439142|gb|EAV45774.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Stappia aggregata IAM 12614]
          Length = 205

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 18/220 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D       +   +     +  + E   G     L          +D  +      + 
Sbjct: 2   LADDHELVRDGIRARLQKVADLEVVGEATNGREALTLAHDLRPDVLLMDVSMPVMNGLE- 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A ++  K    +         V+                Y       A +   +  
Sbjct: 61  ----AATQMRKLLPEIAVL---ILSVYDNPEYVRGVVQAGARGYILKDISAAEMITAITS 113

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +   G          +                     + LT RE + LT I+ G+ + E+
Sbjct: 114 VASGGYYFSSAVGPTLV---------GAGTSAPVEDPYGLTDRERQVLTAIARGQPNKEV 164

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LGIS  TV ++  ++  K   K  +     A    ++
Sbjct: 165 AKELGISVRTVESHRLNLREKVGNKNAAQLYKVAQDLGLL 204


>gi|269124765|ref|YP_003298135.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309723|gb|ACY96097.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 34/238 (14%)

Query: 1   MNFEIQQ----VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV 56
           M+ E  Q    + + L  + E     V+ L +  D +  +           R+ A     
Sbjct: 1   MSAEQSQDQRTIRVFLLDDHEVVRRGVAALLSAEDDIEIVGEAGTAEQALARIPAA---- 56

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
                            LD  +       + R +     +           L    F   
Sbjct: 57  -----------RPDVAVLDVRLPDGDGVSVCREIRSRMPEVAC--------LMLTSFEDE 97

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y       + +   +  +     ++      ++           +  
Sbjct: 98  EALFDAVMAGAAGYVLKQIHGSDLVGAIRTVASGQSLLDPQSTAKM-------LQRVRER 150

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                    LT +E + L  I EG T+ +I   + ++  TV NY++++  K   + R+
Sbjct: 151 AARKDPLASLTDQERQILELIGEGLTNRQIGERMFLAEKTVKNYVSNLFTKLDMRRRT 208


>gi|227834238|ref|YP_002835945.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183272|ref|ZP_06042693.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455254|gb|ACP34007.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   ++ +  +  +      T          G    LL+   
Sbjct: 2   IRVLLADDHEIVRLGLRSVLEGAEDIEVVGEVA-----TAEAAVSAAQAGGIDVLLMDL- 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                +  + +            A             P  L    + T  + +       
Sbjct: 56  -----RFGAGIEGTRVMGGAEATAAIRYSMENP----PKVLVVTNYDTDADILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +      ++                       LT
Sbjct: 107 VGYLLKDAPPVELLAAVRSAAEGDSALSPVVADKL-------------MTRVRTPRTSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI V L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 PRELEVLKLVAAGSSNREIGVELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212


>gi|196228529|ref|ZP_03127396.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196227932|gb|EDY22435.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 24/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E       L   R        LD  +      
Sbjct: 8   VLLVDDHFMVRRGLAVALRVEKDLAVVAEAGNCEEMLAAYRQHRPDVVLLDWRLPGPNGA 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 L                     Y   + +   I   +
Sbjct: 68  EATALLREEH--------PGARVLMLSALDGDEHIHLAVRAGAAGYVLKSAERGEIIQAI 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +              +   A               +  E++ RE E L   + G+ + 
Sbjct: 120 RAVHGGKSYFSPGLEALLHDRA---------------RKVEISPREREVLVRAAAGERNK 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   LGIS  TV  ++A I +K   + R+ A+  A++  I+
Sbjct: 165 EIGDHLGISEATVKVFMARIFQKLDARDRAHAVVIAIKRGII 206


>gi|120402369|ref|YP_952198.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955187|gb|ABM12192.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 220

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 63/230 (27%), Gaps = 28/230 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-L 63
              V IVL  + E     +  +                 ++  R+  + + VGA   L +
Sbjct: 4   ASPVRIVLVDDHEMVIEGLKAML---------------AAFGSRVTVVGQAVGADRVLGV 48

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V          D  +      D+ + +            +        V+          
Sbjct: 49  VTELDPDIVLCDVRMQGSSGLDVCQQLRE-----RDPDRKVVM---LSVYDDEQYLFQAL 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y   +     +   L  +      I           AA             G  
Sbjct: 101 RVGASGYLLKSISSEELVKQLESVHGGQTAIDPSMAARAADTAARMQRDEFWPGARRG-- 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             LT RE E L  +  G ++  IA  L I   TV  +++SI RK     R
Sbjct: 159 --LTQRESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDR 206


>gi|38234803|ref|NP_940570.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38201067|emb|CAE50791.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   ++ +  +  +    +         +  G    L+    
Sbjct: 2   IRVLLADDHEIVRLGLRAVLESAEDIEVIGEVATAEAAIAA----AQAGGIDVILMDLRF 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q       +D    + R M              P  L    + T  + +       
Sbjct: 58  GPGVQGTKLTSGADATAAIRRRMDN-----------PPEVLVVTNYDTDADILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +                       LT
Sbjct: 107 LGYMLKDAPPEELLAAVRSAAEGDTALSPTVANRL-------------MSRVRAPRNSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ +I   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 PRELEVLKLVAGGSSNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212


>gi|317128012|ref|YP_004094294.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472960|gb|ADU29563.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 203

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 35/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D      +  L +R   +  +                    GA      + +
Sbjct: 1   MKILIVDDDPLVCQSLKVLLSREKDMEVIGTAQN---------------GAEAVAFCQKE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +         R + L         L +   +    F              
Sbjct: 46  LLDVVLMDIQMPIMDGIQATRQIKLD--------LPKVRIMMLTTFKDEKNIRMAILAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +  V  +   +  L     ++  D L E+            +   +  +  +LT
Sbjct: 98  EGYLIKSTSVTSMAQQIRALMSGSTVLDADVLKEL------------TEPSNNEELDQLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE +    +++G ++ EIA  L I   TV N ++ I+ K   + R+    Y
Sbjct: 146 PREKDIAELVAQGLSNREIAEQLYIGEGTVRNNLSIILEKLDLRDRTQLAIY 197


>gi|197285412|ref|YP_002151284.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320]
 gi|194682899|emb|CAR43257.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320]
          Length = 207

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 34/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +   +I++  +       +  L  +      +               L            
Sbjct: 1   MPSYSIMIVDDHPIMRYGLRLLLEQDKEFIVVSESGNAQEAITTAKQL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      D++R +                 L   +  +  +      
Sbjct: 49  ---NPDLIMMDLHLQGRSGIDIIRSLRRCGLT--------SYVLVLSISDSRNDVYAALD 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y     ++  + + L        +        I L   Y                
Sbjct: 98  AGANGYLLKECELDMLLLSLRKAVVGRPVYSEKVWQYIQLRQNY-----------SDPLS 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE++ L  ++ G  + +IA  L IS  TV  +I +I++K    +R  A    +++
Sbjct: 147 ALTKRELDVLQEVAVGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAASLILIKH 205


>gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 306

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           V+N  D  R   V+ + +RSDL  R+I           M  L +  G + + +    L  
Sbjct: 66  VINGADPLRMVRVNRISSRSDLFPRLI----------AMQKLADAQGFAIYRVSGSGLPA 115

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------ 124
           +Q+L   +  +W                  +L    +   P+      +   P       
Sbjct: 116 KQRLVCEL-ENWGPSNAGFGKAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAP 174

Query: 125 ---GMDNRYC-----SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               + +        +    +  +  G +L          D + E+     +      S 
Sbjct: 175 FMTRLRDGILPFSGLAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSL 234

Query: 177 DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  
Sbjct: 235 DERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQ 294

Query: 236 AIAYAVRNNIV 246
           AIA A+R   +
Sbjct: 295 AIAKAIRLGYI 305


>gi|146302462|ref|YP_001197053.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146156880|gb|ABQ07734.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 209

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 30/233 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + +  +D+  +  +  +    + +          S   ++  L              
Sbjct: 2   KIRVAIVEDDKHYSQALKSIIDFQEDMECAAQFFNGKSALQKLEDL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D+V  +           +   + + C  F    +  +     
Sbjct: 48  -EPDVVLMDIQLQDASGIDIVSKLTE--------AMPGTSFIMCTSFENDEKIFSALRAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y      + +I   ++     G  +          +A      F+   V       L
Sbjct: 99  ASGYLVKGDPLDKIIQAILEAHKGGAPMSF-------TIAKRVLQHFQESKVQVQSLALL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T  E E L  +++G    EIA    ++ +T+  +I +I RK     +  AI  
Sbjct: 152 TVTEKEVLELLAQGLLYKEIADKKNVTIDTIKKHIGNIYRKLQVSNKIEAINK 204


>gi|238025165|ref|YP_002909397.1| response regulator, NarL family protein [Burkholderia glumae BGR1]
 gi|237879830|gb|ACR32162.1| Response regulator, NarL-family protein [Burkholderia glumae BGR1]
          Length = 238

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 78/238 (32%), Gaps = 21/238 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-------DSIV 78
           LP    +   ++ +D       R+  +   +G +   L+  D   + +           +
Sbjct: 4   LPPEPMVPGPLLIVDDEPMMQRRLTTILTSLGYADDALLFADSLAQARATRATQPCAIAL 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDNRYCSLTFDV 137
                 D      + E  +    L            +  P  +         Y     D 
Sbjct: 64  VDIGLPDGSGIELIREWHEADPALPIVVIST----WSTGPTIVGALQAGATGYLLKERDD 119

Query: 138 ARIRIGLMLLFPKGRIILRDRLW---------EIGLLAAYQANMFKSYDVHWGKDFELTG 188
             I + +  +   G  I                     A  A+              L+ 
Sbjct: 120 LEIALSIRSVLRGGAPIDPFVARYILDSVNAPPPATAPAAPASTVTLPSRDGAPPVRLSR 179

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  +S+G T+ EI+ +L +SR TV  +I +I +K A ++R+ A+  A  + ++
Sbjct: 180 REIEILGIVSKGLTNREISELLSLSRLTVECHIKNIYKKLAVRSRTQAVFEARAHGLL 237


>gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 265

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 100/245 (40%), Gaps = 15/245 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
              +Q+ S  + L     L +R+         T     LT  +GA  ++LV     Q++ 
Sbjct: 24  SGQKQQMSSPAALLQSDTLGSRL---TSRGDLTSFFMELTAEIGADSYMLVAIVHDQDRN 80

Query: 74  LDSIVSSDWPFDLVRCMA-------LSEKDKYYNVLQR--PTELFCPVFHTL---PENIT 121
              IVSS+W FD +  +                  ++         P    L    E   
Sbjct: 81  DARIVSSNWIFDAIELIGKRLIASLAQGALTVAPGIRPRPLVAARAPDADGLVSGEEARL 140

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                     SL  +V R R+  +        I +  L +  L   Y  +          
Sbjct: 141 LDVLGHAEIYSLRLNVGRQRLFALFSAATSGQIDQPALMKAQLKCCYALSHIPQLIAAAA 200

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE ECL W+SEGKT+DE+AVILG+S NTVN+YI   ++K A   R+ AIA A+
Sbjct: 201 MQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAI 260

Query: 242 RNNIV 246
           R+ I+
Sbjct: 261 RSGII 265


>gi|314915868|gb|EFS79699.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
          Length = 206

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 61/235 (25%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +          E VG          L Q+
Sbjct: 1   MIDKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGRGDEVVG----------LVQD 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +       L      +E             L    F                + 
Sbjct: 51  TYADVCLLDIEMPGLDGITVATELRDQAP---WCRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+GRE 
Sbjct: 108 VKDTPAEDLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSGRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R   +
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 254

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW-----PFDLVRC 89
           R++P           + L + +G    +     +  +Q    I  S       P D    
Sbjct: 11  RLMPGRSLDEQMDNTFILAQQLGFDALVYDYTPVPIDQDGALITPSVLELRNTPPDWHAL 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAG----------MDNRYC 131
                  +   V         P   +        L + I P             +     
Sbjct: 71  WCSKGFYQIDPVQHLALSTVSPFVWSYDVKVDTPLQKIIDPCHAPVSTYLHDQQLTCGVS 130

Query: 132 SLTFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
                       L  L            +  L +  L++               + +   
Sbjct: 131 VPIHLPRGGFASLTGLRTGKAHSVLQDAQQTLSDFSLISHALQEAAYPLFSKELRTYPHI 190

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE ECL W ++G T+ EIA  L  S   V  ++AS M K   K R  A+  A    
Sbjct: 191 HLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHYR 250

Query: 245 IV 246
           ++
Sbjct: 251 LL 252


>gi|300723547|ref|YP_003712852.1| response regulator in two-component regulatory system with NarQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630069|emb|CBJ90706.1| response regulator in two-component regulatory system with NarQ (or
           NarX), regulates anaerobic respiratory gene expression
           [Xenorhabdus nematophila ATCC 19061]
          Length = 211

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       L   +     +    E   G     +          +D  +      D ++
Sbjct: 10  DDHPIIRHGLKGLIELERELIVTAETDNGEDAINIACQIKPDIILIDLKIHGLSGIDTIK 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +     D           L         +         N Y     ++  +   +    
Sbjct: 70  SLRRKGLD--------SYILVLSDSDNRSDIYDAVDAGANGYLLKDIELDPLLSNIKKAI 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               +                     +  ++     +LT RE++ L  ISEG T+ EIA 
Sbjct: 122 DGHAVFSE-----------KVHQYLSTRHLYIDPLSKLTKRELDVLKEISEGMTNKEIAD 170

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L IS  TV  +  ++++K  +++R  A    +++
Sbjct: 171 FLFISEETVKVHTRNLLKKLKSRSRLEATIIYLKH 205


>gi|296100407|ref|YP_003610553.1| DNA-binding transcriptional activator UhpA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295054866|gb|ADF59604.1| DNA-binding transcriptional activator UhpA [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 197

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+          +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLNLEPDFQVVAEFGS-----GREALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  LSGLELLSQLP-----------KGMAIIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVRTVSTGGCYLTPDIALKLA----------------AGRQDPLTRRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIA  LG+S  TV+ + A++M K            
Sbjct: 153 MAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 199

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 28/222 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   +     M  + +   G     LV+        +D  +     
Sbjct: 3   RIVIAEDQRMLLGALSSLLDLEEDMEVVGKARNGEEALALVQEHSPDICIMDIEMPVKSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D+   +                 +    F              + Y         +   
Sbjct: 63  LDVAEELVD----------HPCKIIILTTFARAGYFERARNAEVSGYLLKDSPSEELASS 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++    RI   +                   D+ +     LT RE + +  I+EGK++
Sbjct: 113 IRIIMDGRRIYAPEL-----------------IDLAYDNKNPLTNREKQVMELIAEGKST 155

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EIA  L ++  TV NYI+ I+ K     R  AI+       
Sbjct: 156 NEIASELYLTNGTVRNYISVILDKLDVGNRIEAISRFKEKGW 197


>gi|254491855|ref|ZP_05105034.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463333|gb|EEF79603.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 211

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 62/223 (27%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     +   +     +  + E   G   + L +        LD  +     
Sbjct: 3   RVILVDDHVVVRTGVKRLLEEQADLRVIAEAATGDDAYKLYQQYQPDVLILDMNMPGSSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +             +   +   +   +   +   +     Y   +     +   
Sbjct: 63  LATLGQLIARYV--------KAKVIMFSMHTEVSFAVQAISAGAKGYVLKSSTPEEMIQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    I L          +          LT RE E    ++EG   
Sbjct: 115 VRQVASGKSYLSAEVAQNIAL---------HNLSQENDPTRVLTPREFEIFRLLAEGAEV 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           D IA  L I   TV NY   +  K    T    +  A++++I+
Sbjct: 166 DMIASTLKIGHKTVANYQTQLKHKLNIHTPIQLVRLALKHHII 208


>gi|302519163|ref|ZP_07271505.1| two component transcriptional regulator [Streptomyces sp. SPB78]
 gi|302428058|gb|EFK99873.1| two component transcriptional regulator [Streptomyces sp. SPB78]
          Length = 235

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 19/238 (7%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + L  + E     +  L      +  +           R+ A               
Sbjct: 6   PVRVFLLDDHEVVRRGLRDLLEAEPDIVVVGEAANAREALARVPAT-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + S    D        E       L          F             
Sbjct: 52  -RPDVAVLDVRLGSATGGDHEGVEVCRELRAELPELACLM---LTSFDDDEALFDAIMAG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
              Y     + + +   +  +     ++        +  +   +           G+   
Sbjct: 108 AAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREPEPEKPAPSRALPGELDR 167

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     R  A   A R 
Sbjct: 168 LSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGRRIQAAMIAERL 225


>gi|307727191|ref|YP_003910404.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587716|gb|ADN61113.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 210

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       +  +   +  +              ++                  
Sbjct: 2   INLLIADDHPLVRGGLKQIIETTPDIVVAGEAAQGSEVIEKLRT---------------C 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL+R +                 L   + +             
Sbjct: 47  QVDLLLLDMTMPGISGVDLIRRVRAER--------PSLPLLVLSIHNEAQVVSRALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   +   +   +  L   GR I    +  I          F++Y         L+
Sbjct: 99  TGYVTKDSNPDVLLAAIRRLAEGGRFIDPKLVEGIV---------FETYSGDAPPHEILS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK+ +EIA    +S  T++ +   +M+K      +  I YA+R+ +V
Sbjct: 150 DREFQVLQMLALGKSLNEIAEAFALSAKTISTHKMRLMQKLGLANNADLIRYAIRHGLV 208


>gi|291003093|ref|ZP_06561066.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 233

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + +VL  ++      +  L  +   +  +            +               
Sbjct: 13  QRPIRLVLADDEVMLRRGLRVLLEQGGRIRVVAEAGNGEELLAAVR-------------- 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + S      +R +          VL          F           
Sbjct: 59  -GHRPDVVLVDVQMPSKDGLSALRDLRAMAAPPIAAVL--------TTFDLDDYVAEALR 109

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N +     D A +   ++ L   G ++       +        +      +      
Sbjct: 110 LGANGFLLKDADPAVLVRAVIDLAAGGAVLDPRITARLLPRFRNLGDSADEVRLVR---- 165

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L+ RE + L  +++G+++ +I   LG++  TV +Y+++++ K   + R  A   A R
Sbjct: 166 TLSARERQVLFLLADGRSNADIGDRLGLTEATVKSYVSTVLGKLGAENRVQAALIAQR 223


>gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032]
 gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter
           turicensis z3032]
          Length = 210

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 60/216 (27%), Gaps = 17/216 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L   +    R     E   GA      +        LD  +     
Sbjct: 4   HVLIVDDHPLMRRGLRQLLETDARFRVTGEASSGAEAIAQAQELAPDVILLDLNMRGLSG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +                 +   V     +         + Y     +   +   
Sbjct: 64  LDTLNMLRRDGVS--------ARIIVLTVSDARSDVYAMIDAGADGYLLKDSEPEALLEA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        +        +           +  +        LTGRE++ L  ++ G ++
Sbjct: 116 IRDGAAGAGVFSEQVQAYLLTR--------EPEEQRNAPFALLTGRELDVLQEVARGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L IS  TV  +I +++RK   ++R  A   
Sbjct: 168 KQIAATLHISEETVKVHIRNLLRKLNVRSRVAATVL 203


>gi|291299577|ref|YP_003510855.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568797|gb|ADD41762.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 65/242 (26%), Gaps = 39/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            ++V +++  +       ++ L      +  +  +            +            
Sbjct: 10  QRKVTVLIAEDQAMMRGALTVLLNLEPDIEVIAEVAEGDRILPEAERV------------ 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      D    +           L     +    F           
Sbjct: 58  ---RPDVALLDIELPGMSGIDACALLRQR--------LPDCRVIIVTTFGRPGYLRRALD 106

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +      V  +   +  +     +I  D                         + 
Sbjct: 107 AGASGFLVKDGPVDGLARAIRSVVNGQTVIDPDLAA----------------GAIRAGES 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L    +G  + +IA  L +S +TV NY++S + KT T+ R  A+  A    
Sbjct: 151 PLTDREREVLAAAEDGARATDIAKRLHLSDSTVRNYLSSAISKTGTRNRIEAVKKARELG 210

Query: 245 IV 246
            +
Sbjct: 211 WL 212


>gi|217978420|ref|YP_002362567.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503796|gb|ACK51205.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 223

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            S  + +    D           +    R+  + E   GA  + L +        +D  +
Sbjct: 1   MSGAATILLVDDHAIVREGYRALLQQQPRLKVVAEAGDGAEAYRLFKQVKPDLVIMDLTM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + V+ +       +    +                +         Y + +    
Sbjct: 61  PGLGGVEAVKRIRQ-----WDPAARILVFTM---HQNAAFAVQAIRAGAKGYVTKSSPPE 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  G   +      +  D   E+ L                     LT RE E L  + 
Sbjct: 113 ALIRGAFDVLQGRIALSADIDHELAL---------SRVTETPTATDVLTPREFEILRLLL 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             K+++ IA ILG+S  TV N    I  K    +    +  A+R  I+
Sbjct: 164 AEKSTEAIAAILGLSPKTVANTRYLIKAKLGVASDIELVLVALRQGIL 211


>gi|312129464|ref|YP_003996804.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906010|gb|ADQ16451.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 11/190 (5%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           E  G +       D   E  +D ++       L          + +  ++    +   + 
Sbjct: 28  EVAGVASNGQQALDQLAETPVDILLMDVNMPVLNGYQTTFLVRERFPEVKI---IILSML 84

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                         + Y     D   +      +      I ++   ++      Q    
Sbjct: 85  ADELSVSKLLEAGAHGYLFKNADEDELFEAFDTVTQGHVYITKEIRDKVLPAKMAQF--- 141

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                      +L+ REV+    I EG T+ EIA  L +S  TV  +  +I+ K   K  
Sbjct: 142 -----KMDDSIKLSSREVDIARLIMEGLTNIEIADKLFLSVRTVETHRKNILAKLNLKNT 196

Query: 234 SGAIAYAVRN 243
           +  + Y + N
Sbjct: 197 ASLVKYLMEN 206


>gi|325524436|gb|EGD02506.1| two-component response regulator transcription regulator protein
           [Burkholderia sp. TJI49]
          Length = 224

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 12/221 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L      L R+                    G     L          +D  +     F+
Sbjct: 8   LIVEDQHLLRVGLSHLVSELADYCIVGAASGGVEACALAEKTRPDLILMDLSMPGGSGFE 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +  +        +     +   V  +  +     A   + Y       A +   + 
Sbjct: 68  AIATIKRN--------VPHVRIIVLTVHRSEDDVSDAFAAGADGYVVKDSPFADLVREMR 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  D       L   +        +       LT RE   L  + EG TS +
Sbjct: 120 FVMQGKCVVSLDAYRARAGLHGLRDEHAHKARLWRA----LTSRERTVLRLVVEGHTSRQ 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   L +S  TV+ + A++MRK      +G + +A+   ++
Sbjct: 176 VGECLKVSPKTVDKHRANLMRKLGIANLTGLVHFAIDIGVL 216


>gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 230

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 65/228 (28%), Gaps = 30/228 (13%)

Query: 49  MYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
           M+     +G    +     +              +  + P D+          ++  V Q
Sbjct: 1   MFRDVSALGFQSLVYDYAPVPLSIEGALITPTVFMQRNAPGDMQHVWCAHGYYQHDPVQQ 60

Query: 104 RPTELFCPVFHTLPENITPPA------------------GMDNRYCSLTFDVAR----IR 141
           R T    P   +   +                       GM                   
Sbjct: 61  RATRRTTPFVWSYHTDGNCAGVEYVGGQHWQVTRYLCDSGMGTGATVPLHLPGGAFATFS 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWIS 198
             +  +  +   +   +L    LLA       +       +      LT RE ECL + +
Sbjct: 121 GAIDTVDAEAPHLAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIALTRRERECLQYSA 180

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   ++
Sbjct: 181 KGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRLL 228


>gi|271961819|ref|YP_003336015.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504994|gb|ACZ83272.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 15/219 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D  A    +   +     +  + +       + +   L    + D ++      
Sbjct: 4   RVLVADDHAAVRAGIVLILEGQEDIEVVGQASDGEQAVAMALGL----RPDVVLMDIRMP 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L    A  E     +VL          F                +     D   +   +
Sbjct: 60  KLDGISATRELSGIADVL------ILTTFDIDEYIFGALRAGAAGFLLKNTDADALVEAV 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++     +I       +           +  +V       LT RE E L  I  G ++ 
Sbjct: 114 RVVARGDGLISPSVTRRLISAFGTAVPERRPQEVG-----GLTPREREVLACIGRGMSNA 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EI+V L ++  T   +++ ++ K   ++R  A   A   
Sbjct: 169 EISVELDMAEATTKTHVSRLLNKLGLRSRVQAAILAQEL 207


>gi|299140030|ref|ZP_07033200.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598030|gb|EFI54198.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 209

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 28/235 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N+ D  R   V   P   D +A  +  +  +             G       R      
Sbjct: 1   MNKSDRIRVLCVDDHPLVRDGIAFALQAERDMELVAEATN-----GREAVAAFRQQRPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      + +  +             R   +    +    +           Y 
Sbjct: 56  TLMDLQMPQMNGIEAILAIRKE--------FPRARIVVLTTYSGDVQATRALEAGAVGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +  +    R I R+   E   +A +                 L+ RE 
Sbjct: 108 LKSMLRTELIDTIRGVHAGQRRIPREIADE---IAEHIGADA------------LSARET 152

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++ G ++  +A  L IS  TV  +I S++ K     R+ A+  A++   +
Sbjct: 153 EVLRVVASGCSNKIVADRLAISEETVKGHIKSVLAKLCANDRTHAVMIAMKRGFL 207


>gi|325981952|ref|YP_004294354.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325531471|gb|ADZ26192.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 210

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L    S T  +  + E + G       +   +    LD  +      
Sbjct: 4   VLIADDHALFRDGLKRIFSETDDIKVVAEAINGKDAIKKAKEYNWDIALLDINLPDMNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++++ ++ +              L   ++      I       + Y +      ++   +
Sbjct: 64  EVLKRISSANLP--------SYVLVLSMYPEEEYAIRAIRSGASGYMTKDSPTDQLINVV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   G+ +  +   ++              +         + RE      I  G++  
Sbjct: 116 RRLANGGKYVNPELAEKLL--------FTPLINSEKLIHTTFSDREFHVFKLIVSGESLT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L +S  TV+ Y + ++ K   K  +  + YA+++ ++
Sbjct: 168 SIANKLSLSVKTVSTYRSRLLEKMRMKNNAQLVRYAIQHRLI 209


>gi|168749814|ref|ZP_02774836.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|168756893|ref|ZP_02781900.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|168768302|ref|ZP_02793309.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|168776343|ref|ZP_02801350.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|168783217|ref|ZP_02808224.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|195938573|ref|ZP_03083955.1| putative transcription regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808046|ref|ZP_03250383.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208815487|ref|ZP_03256666.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208822917|ref|ZP_03263235.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209400645|ref|YP_002269004.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|254791544|ref|YP_003076381.1| putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 str. TW14359]
 gi|187768261|gb|EDU32105.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4196]
 gi|188015874|gb|EDU53996.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4113]
 gi|188999335|gb|EDU68321.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4076]
 gi|189356031|gb|EDU74450.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4401]
 gi|189362357|gb|EDU80776.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4486]
 gi|208727847|gb|EDZ77448.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4206]
 gi|208732135|gb|EDZ80823.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4045]
 gi|208737110|gb|EDZ84794.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4042]
 gi|209162045|gb|ACI39478.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4115]
 gi|254590944|gb|ACT70305.1| putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 str. TW14359]
          Length = 209

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +  +  +         +  D      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAW-----SALIRDDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +         +   +   ++       +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQK--------PQFRAIILSIYDAPIFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVGLGGHYLCADAIRAL-----------RGGGQPAQALEILTPREREVFELL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 158 VKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|118616214|ref|YP_904546.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           ulcerans Agy99]
 gi|118568324|gb|ABL03075.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           ulcerans Agy99]
          Length = 216

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 70/243 (28%), Gaps = 32/243 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + ++V +V+  +       V    + S  +  +   D                GA+   L
Sbjct: 5   KTEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADD---------------GAAALEL 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           +   L     LD  +       +   +  +              L               
Sbjct: 50  IETHLPDVALLDYRMPRMDGAQVAAAVRSNGLP--------TRVLLISAHDESAIVYQAL 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +         I   ++       ++    +  +   A                 
Sbjct: 102 QQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPMAPV---- 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  I++G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R 
Sbjct: 155 --LSAREREVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQ 212

Query: 244 NIV 246
            ++
Sbjct: 213 GLL 215


>gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 200

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 73/226 (32%), Gaps = 28/226 (12%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P   + L  MI  +  +             G+      R        +D  +  
Sbjct: 1   MSVEDHPIFREGLNSMITSEPDLHLVAEA-----ISGSEAVAAFRTHRPDITLMDFRMPG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                 ++ +            Q    +         E         + Y   +   A I
Sbjct: 56  LDGIAALKAIRRE--------FQSARIIMLTTSEGDVEIRKALRAGASAYMLKSMPKAEI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   GR +  +   +I +                     LT RE+E L  I +G
Sbjct: 108 LAAIRSVHDGGRCVPPEVAAKIAM---------------HLGGEHLTVRELEVLALIRDG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + ++A ILGI+  TVN +I+++++K     R+ A+A AVR   +
Sbjct: 153 HANKQVADILGIAETTVNFHISNLVKKLKANDRTHAMAIAVRRGFL 198


>gi|289770570|ref|ZP_06529948.1| two-component system response transcriptional regulator
           [Streptomyces lividans TK24]
 gi|289700769|gb|EFD68198.1| two-component system response transcriptional regulator
           [Streptomyces lividans TK24]
          Length = 218

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 31/241 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +    +  +           R+ A            
Sbjct: 3   EDGKIRVFLLDDHEVVRRGVHDLLSGEADIEVVGEAGTAAEAQARVTAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   ++            L    F          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCRDIRSRDESVRC--------LMLTSFADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-K 182
               + Y       A +   +  +     ++                   +        +
Sbjct: 100 MAGASGYVLKDIRGAELLGAVREVAAGKSLLDPAATAR-------VLERLRGGGTRPDDR 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 153 LARLTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 212

Query: 243 N 243
            
Sbjct: 213 L 213


>gi|189219932|ref|YP_001940572.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189186790|gb|ACD83975.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 212

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 58/228 (25%), Gaps = 28/228 (12%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +       +  L +R   L               +  +                     
Sbjct: 2   DDHPVVREGIIQLLSRDKNLHVCGEAGNAYEGFEGIGKVL---------------PDIAI 46

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           ++  +      +L+R +        Y  +             +             Y   
Sbjct: 47  INLSMPGKNGLELIRDIR-----CAYPQVYNLVFSM---HDEMIYAERALKAGARGYLMK 98

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           T    ++   +  +      +       I    +      K+          L+ RE E 
Sbjct: 99  TEGGEKLIEAIYKIAKGEIAVSPKVSNLIISNIS-----TKTQKTVNNPTQLLSNREFEI 153

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              I +G    +I+  L IS  TV +Y +SI  K   K+    + YAV
Sbjct: 154 FQLIGKGHGIRQISEQLHISIKTVESYRSSIKEKLKIKSTEELVHYAV 201


>gi|117617851|ref|YP_857301.1| DNA-binding transcriptional activator UhpA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559258|gb|ABK36206.1| transcriptional regulatory protein UhpA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 196

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 30/212 (14%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--DSIVSSDWPFDLV 87
            D           ++    +  + E  G++   L        Q    D  +      DL+
Sbjct: 8   DDHQIVRSGFAQLLNLEPDLRVVAE-FGSAAEALAGLPGSGVQLCVCDISMPDQSGLDLL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +                 +   V  +              + S       +   +   
Sbjct: 67  KRLPS-----------GLAVVMLSVHDSPALIEQALQAGAKGFLSKRCSPDELIAAVRTA 115

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  D   ++                       LT RE E    ++ G     IA
Sbjct: 116 AHGGCYLTPDIAHKLA----------------CNSQDPLTNREREVAQLLARGLEVKAIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LG+S  TV+ + A++M K            
Sbjct: 160 EQLGLSPKTVHVHRANLMDKLKVSNNVELAHR 191


>gi|257067834|ref|YP_003154089.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
 gi|256558652|gb|ACU84499.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Brachybacterium faecium DSM
           4810]
          Length = 211

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 29/230 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS--- 80
            L    D       L   +     +  + +   GAS    V         LD  + +   
Sbjct: 3   RLVVADDQAILRSGLVALLRLESDLEVVGQAADGASTLAAVAEHSPDVLLLDVQMPAGTT 62

Query: 81  ----DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
               D P D +      + ++    +     +    F              + +      
Sbjct: 63  ADGADGPADGIAVAEALQGEEDAPRI-----IVLTTFGRAGYLRRTMEAGAHGFMVKDTP 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V R+   +  +    R +  +   +   +                    LT +E E L  
Sbjct: 118 VERLVDAIRRVHQGLRAVDPELAAQSLAVG----------------PSPLTAKETEVLQT 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++ +IA  L +S  TV N++++++ K     R+ A+  A  N  +
Sbjct: 162 VATGASTAQIAQTLFLSEGTVRNHLSAVIGKLGVTNRAEAVRAASDNGWI 211


>gi|171778727|ref|ZP_02919823.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282684|gb|EDT48108.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 198

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  ++           +                 +
Sbjct: 1   MKLLVAEDQSMLRDALCQLLLMEDDVDEILQASDGEQAIGILKT---------------E 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +            +    +    F  +           
Sbjct: 46  SPDVAILDVEMPKKSGLDVLEWIRE---------HKDLKVIIVTTFKRVGYFERAVKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       + +   +  +    +    + +                 +    +D  L+
Sbjct: 97  DAYVLKDRSTSELMSTIHTVLAGKKEYSSELM-----------------ESMISQDNPLS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  IS GK++ +IA  L +S  TV NY +SI  K +   R  A   A     +
Sbjct: 140 PQEKRILQLISLGKSNQDIADTLYLSNGTVRNYTSSIFNKLSANNRVEAARIAKDKGWL 198


>gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 201

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 69/223 (30%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  +   +     +  + +   G      +         LD  + +   
Sbjct: 3   RIVIAEDQTMLLGAMTALLQLEDDIKIVAQARNGLEALAAIEKHQPDLCILDIELPNMTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ + +   E D           +    F                Y      +  +   
Sbjct: 63  LEVAKRIREQEWD--------CKMMIVTTFARASYLQQAMDLKVEGYLLKDEPIEFLVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++  D    + L                 ++  LT RE E L     GKT+
Sbjct: 115 IHKVMNGERVLSPDLAMHLFL----------------KEENPLTEREQEVLRLTKGGKTT 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA +L ++  TV NYI++ ++K   + R  AI  A     +
Sbjct: 159 EQIATVLYLTNGTVRNYISTAIQKLEVENRHQAIQKAEEKGWI 201


>gi|124005623|ref|ZP_01690462.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
 gi|123988691|gb|EAY28297.1| DNA-binding response regulator, LuxR family [Microscilla marina
           ATCC 23134]
          Length = 222

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 23/239 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I +  +       +  +  ++  L  ++  +       ++ +  +          
Sbjct: 1   MNPIKIGIVDDHRLFREGLIFVIEQNQDLKVILEAEQGQDLLDQLASTPK---------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +  + +        Y  ++    +    +  +   +    
Sbjct: 51  ---LPDIILMDIRMPVMDGLECTQLIKKQ-----YPSIKI---ITVTTYDQVDYILYLLK 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y         I   +   + +             +L   +               
Sbjct: 100 LGVNGYLRKIVSGKEICHAIRATWEQEYYFDSFVTQ--IMLDGLKRKRNFVAKPKIDGQV 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +T RE E L  I +  T+ EIA  L +S +TV  +   +  K   K   G +  A++ 
Sbjct: 158 NITPREQEVLELILKEYTTQEIADRLFVSIHTVETHRKKLFNKFGVKNVVGLVVRALQM 216


>gi|254448074|ref|ZP_05061537.1| response regulator, NarL-family [gamma proteobacterium HTCC5015]
 gi|198262200|gb|EDY86482.1| response regulator, NarL-family [gamma proteobacterium HTCC5015]
          Length = 213

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 22/225 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V  LP     L++++P         +   L E         +     +   +D  +   
Sbjct: 6   IVEDLPDTLAWLSQLLPNAFPDMAIYQARNLAEAHQ-----QIDLHQPELALIDLGLPDG 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L+  +     +    V          +F      +         Y     D   + 
Sbjct: 61  SGIELIERLHRESPNTLCVV--------STIFDDDQHLLPALKAGAQGYILKDRDSDEVA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +      +       +                   ++  LT RE + L  I++G 
Sbjct: 113 QLLEGIRTGRPPLSAAIARRLISFFG---------PSETTQNSPLTQREHDVLALIAKGY 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  +   +LGISRNT   Y+  I RK    +R+ A   A R  ++
Sbjct: 164 TVKKAGELLGISRNTCAGYVKDIYRKLQISSRAEATVEASRLGLL 208


>gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424]
 gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH
           LuxR domain; higly similar to B. subtilis
           Transcriptional regulatory protein degU (Protease
           production enhancer protein) [Cupriavidus taiwanensis
           LMG 19424]
          Length = 223

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 58/218 (26%), Gaps = 20/218 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  +   +  T  M  + +        +L           D  +     
Sbjct: 6   RVLLVDDHPFVLDGVRLRLEATGEMTVIGQAASVEEAIVLAGRHAPDLVVSDIHMPDANG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L    A                +   +           A     Y         +   
Sbjct: 66  LQLAARFAEQ--------FPSVRVIALSMHKDPEYVRRAFALGVAAYVLKEAPAHELVTA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +  +    +            + +        LT +E   L  ++EG+++
Sbjct: 118 IRTVAAGGTYLNAELQAFLH-----------TDEPPPSSRRALTPKEATVLKLLAEGRSN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            EIA  LG S  TV  +   + RK     R+  + YAV
Sbjct: 167 KEIAERLGTSVRTVETHRLHLRRKLRVGGRAELVKYAV 204


>gi|114769185|ref|ZP_01446811.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550102|gb|EAU52983.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
          Length = 205

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 57/236 (24%), Gaps = 35/236 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            NI++  + +     ++      D                 +  ++             D
Sbjct: 2   TNILIADDHDLVRDTIAAYLETVDSFKVF----TAHDLASALEVMS-----------GVD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +     S     Y   +                        
Sbjct: 47  SIDLLILDYNMPGMNGLQGLERACTS-----YPATKVALMSG---VANREIANNAMERHA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   +         +  +    R +  D +                   +      ++
Sbjct: 99  RGFIPKSLSATSFINAIKFILSGERYLPFDLV------------SSAPASKNHDDFTNVS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE++ L  +  G ++ EIA  L I   TV  ++ +I  K     R+ A  +A   
Sbjct: 147 AREMQTLEQLCIGLSNKEIARNLDIQEVTVKLHVKNIFSKLGVSNRTQAALFAKER 202


>gi|291545304|emb|CBL18412.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 206

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 27/219 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEY-----------VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +I +D        +  + E             G     L R  L     +D  +      
Sbjct: 3   IIIVDDDCLVAGALKTILEANPDIEVTTTGSDGEEACSLYREYLPDILLMDIRMKGMDGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +                 L    F      +         Y     D   I   L
Sbjct: 63  EASRKILGE--------FPEAKILLLTTFSDDEYIVKALRLGTKGYLLK-QDHTSILPAL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    +   +       + +    + +S D        ++ RE++ +  I+ G ++ 
Sbjct: 114 QAVYSGQTVFGTE-------IISKIPELLQSSDGFDYASRNISERELDIIRLIANGYSNK 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L +S  TV NY++SI+ K   + R+    +  ++
Sbjct: 167 EIAAELFLSEGTVRNYLSSILDKLQLRDRTQVAVFYYQH 205


>gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 210

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 78/220 (35%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +      LT   G +   ++  D+      D ++     
Sbjct: 5   KRLLLIDDDPNLILLVRDYLGFRGY-DVLTAENGRTALGVLEQDIPDMIICDVMMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V  +  +E+  +  VL    +          + +       + Y    F+   +   
Sbjct: 64  YTFVEQVRQNERTSWVPVLFLSAKGQSA------DRVKGLNKGADVYMVKPFEPEELVAQ 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +     +  +    R  E         +           D +LT  E++ + +++ G  +
Sbjct: 118 V-----ESSLKQTSRWKEHQTKVGEPGSRI-----QVPFDVQLTPTELKVVQFVARGLAN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S+ TV +++++++ KT    R+    +A+ N
Sbjct: 168 REIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 207


>gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 229

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 64/237 (27%), Gaps = 26/237 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +D      +S   T+                       T   G     L   + 
Sbjct: 3   RVLVVDDDPLSLKVLSRHLTQHGY-----------------RVCTGASGVEGLRLFAQEQ 45

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D ++     F+  R +      +    +   +         + + +       +
Sbjct: 46  PDVVVSDVVMPEMDGFEFCRQLRQQRGGELVPFIFLSSRG------EIDDRVQGYERGAD 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y    F+   +   +     + R    + L  I   +  +                   
Sbjct: 100 DYIIKPFEPLELVAKIEAQIERSRRTQSEILRLIQQQSQPKPEADPRPTPPELPLTP--- 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E      +  G T+ +I   L IS  TV  ++ +I+ K + + RS  + +A     
Sbjct: 157 AEERVFREVIRGFTNKQIGEKLFISPRTVQTHLTNILSKLSLENRSQLVRFAYERGY 213


>gi|327330300|gb|EGE72049.1| nitrate/nitrite response regulator protein NarL [Propionibacterium
           acnes HL097PA1]
          Length = 210

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 59/239 (24%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +     + V+ L      +  +               +   +           
Sbjct: 3   VRVLIADDHPVVRAGVTALLDTDPDIEIVATAATPSQALAAAATVDLDLVLLDLQFSSDA 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                   + +    P                  +          + T  + +       
Sbjct: 63  DAPSGVDVTRMIRSQP--------------NAPEVLIL-----TNYDTDADILAAVEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +                       LT
Sbjct: 104 TGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRL-------------MARMRSPRTSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   ++G ++ +IA  L +S  TV  +++ I  K    +RS A+A A     +
Sbjct: 151 ARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|255531519|ref|YP_003091891.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344503|gb|ACU03829.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 210

 Score =  105 bits (262), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTM---RMYALTEYVGASHFLLVRWDL 68
           +  + E R   +    T  +    +I                A  + +G  +        
Sbjct: 1   MQNQAEARVVIIEDDQTIREGYTYLINNTSPYQVVNTYPSFDAARQKIGRDN-------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D +  +  +        L     +   V  T    +   A   +
Sbjct: 53  PDVIILDIQMPGTNGIDALPLLKKT--------LPDVYIIMLTVHETEKIILEALANGAS 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +     ++I   +  +   G  +  +   ++               +    D  LT 
Sbjct: 105 GYFTKNTPSSKIIEAIKDVLQGGGPMSPNVAKKVIT------------SLQKNPDSPLTK 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L+ +S GK   +IA  L I   TV  +I +I  K    +++ AI  A  N +V
Sbjct: 153 RETQILSLMSRGKDRSQIANELFIEIETVKTHIKNIYLKLDVNSKADAIKVAKNNRLV 210


>gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
 gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
          Length = 237

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 25/241 (10%)

Query: 9   NIVLN---REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           N+V+N   RE + R   V   P   D + R   +           ++ E V        R
Sbjct: 17  NVVMNDSSREPQARVMIVDDHPMWRDAVER-DLVARGYDVVATAGSVREAVDR-----AR 70

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D    + L+        L     L         + +     
Sbjct: 71  ATRPDLVLMDMNLPDGNGADATSAIMLT--------LAEVKVLVLSASSARSDVLDAVKV 122

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDF 184
             + Y   +   A +   +        +   +       LA       +   D       
Sbjct: 123 GASGYLLKSASAAELVDAVEATLRGDAVFTPE-------LAGLVLAHLRGRVDTTDDPAS 175

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +++G  S +IA  LG+S  TV+N++A+ +RK     R     +A+ N 
Sbjct: 176 ALTPRESEVLRMVAKGLASKQIASRLGLSSRTVDNHVAATLRKLHLANRVELTRFALENG 235

Query: 245 I 245
           +
Sbjct: 236 L 236


>gi|254262274|emb|CAZ90598.1| Transcriptional regulatory protein uhpA [Enterobacter pulveris]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 69/214 (32%), Gaps = 24/214 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
            A+++ L+  +    +  +  E         +         LD  +  +    L++ +  
Sbjct: 17  FAQLLSLETDIQVQGQYSSAAEAWPM-----LSRQPVDVAVLDVAMPDENGLSLLKRLRA 71

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                          +   ++ T     +      + Y + +     +   +  +   G 
Sbjct: 72  RRPGF--------RAIILSIYDTPAFVQSALDAGASGYLTKSCGPEELVQAVRSVGMGGH 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +  D L  +           +           LT RE E    + +G++   IA  L +
Sbjct: 124 YLCADALRAL-----------RGGAQPAKVLEVLTPREREIFDLLVKGESVKAIAAQLDL 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV+ + A+++ K    T    + +A+ N ++
Sbjct: 173 SHKTVHVHRANVLGKLQCATTIELVHFALENQLL 206


>gi|90410965|ref|ZP_01218979.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum 3TCK]
 gi|90328178|gb|EAS44489.1| putative nitrate/nitrite response regulator protein [Photobacterium
           profundum 3TCK]
          Length = 194

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +          LD  +      D +  M               + +   V  + 
Sbjct: 24  GTDAVAMAHEKNPDLILLDLNMKGMSGLDTLNVMRAEGI--------LASIVVLTVSDSR 75

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +     A   + Y     +   +   L      G+                     +S 
Sbjct: 76  SDVKALVAAGADGYLLKDTEPDELISLLKQALCGGKAYS-----------NIVREHLESN 124

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + L  +++G  + +IA  L IS  TV  ++ S+++K   K+R+ A
Sbjct: 125 TEQDCLLSSLTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAA 184

Query: 237 IAYAVRN 243
               +  
Sbjct: 185 TVLYLEA 191


>gi|307823586|ref|ZP_07653815.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307735571|gb|EFO06419.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 297

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 12/187 (6%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A+ F            LD ++  ++  ++++ +                 L   +  T  
Sbjct: 37  AALFRQAWITPPNLILLDMMMPKNYGIEVIKEIKKRWLP--------TKILIFTLKDTEE 88

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                     + Y      ++ + + +  +      +  + L    ++  Y        D
Sbjct: 89  NICAAFRAGADGYILKGTTLSELIVAIKSILAGQYYVCPEILP--QIINGYLKVEKSCLD 146

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +   +  LT RE + L  I+ G  + EIA  L IS  TV  + A++MRK      +  +
Sbjct: 147 NNLNWN--LTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATLMRKFNAHNVATLL 204

Query: 238 AYAVRNN 244
           + A +  
Sbjct: 205 SVANQAG 211


>gi|254786408|ref|YP_003073837.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685783|gb|ACR13047.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 217

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  + +     +  +    +    +                    G     L R  
Sbjct: 2   TRILVADDHDLVRMGIVRMLQDVEGFEVVGEAKT---------------GEQAIALSREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +      +  R +  S              +                   
Sbjct: 47  QPQVVLMDVKMPGIGGLEATRKILAS--------CSHTRVVAVTAVSDDLFPERLMKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       I   +  +      +      ++ L        F            L+
Sbjct: 99  SGYVTKGAGFDEIIDAVHSVMNGNLYMSSTIAQQLAL------RTFSGAKGDASPFEALS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+ G    EIA    +S  TVN Y   I  K +  +       AV++ ++
Sbjct: 153 ERELQTAIMIANGSRVHEIAESFCVSPKTVNTYRYRIFDKLSINSDVELALLAVKHKLL 211


>gi|238788409|ref|ZP_04632203.1| Response regulator uvrY [Yersinia frederiksenii ATCC 33641]
 gi|238723655|gb|EEQ15301.1| Response regulator uvrY [Yersinia frederiksenii ATCC 33641]
          Length = 206

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 16/191 (8%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G       R  +     +D  +      +  R +     D           +   +  
Sbjct: 22  QCGEDAVKWCRSHIVDIVLMDMNMPGIGGLEATRKILRFSPD--------TKVIMLTIHT 73

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P          + Y S       +   +  +    R I  D   ++ L          
Sbjct: 74  ENPLPAKVMQAGASGYLSKGAAPQDVITAIRAVHSGQRYIASDIAQQMALGQLE------ 127

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K       
Sbjct: 128 --PPTETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDV 185

Query: 235 GAIAYAVRNNI 245
                A+R+ +
Sbjct: 186 ELTHLAIRHGL 196


>gi|238757449|ref|ZP_04618634.1| hypothetical protein yaldo0001_29430 [Yersinia aldovae ATCC 35236]
 gi|238704211|gb|EEP96743.1| hypothetical protein yaldo0001_29430 [Yersinia aldovae ATCC 35236]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 18/221 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D    +  +   ++   R   + +   G   + L R        +D  +      
Sbjct: 5   LLIVDDHELIINGIRNMLAAYPRYQIVGQADNGLDVYDLCRKTEPDIVIIDLGLPGMDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +                 L     H               Y         +   +
Sbjct: 65  DVIIQLVRRWPKM--------KILVLTARHEEHYANKTLNSGALGYVLKKSPQQILMAAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I               + + +           LT RE + L  I+EG  + 
Sbjct: 117 QTVTAGKHYIDPTL---------DISRVNRLTQNSDNSRTALTPRERQVLKLITEGACNR 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 168 IIADRLSISKKTVETHRLNMMKKLDVHKVAELINWSYRLGM 208


>gi|238760649|ref|ZP_04621775.1| Response regulator uvrY [Yersinia aldovae ATCC 35236]
 gi|238701138|gb|EEP93729.1| Response regulator uvrY [Yersinia aldovae ATCC 35236]
          Length = 206

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 16/191 (8%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G       R  +     +D  +      +  R +     D           +   +  
Sbjct: 22  QCGEDAVKWCRSHVVDIVLMDMNMPGIGGLEATRKILRFSPD--------TKVIMLTIHT 73

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y S       +   +  +    R I  D   ++ L          
Sbjct: 74  ENPLPAKVMQAGAGGYLSKGAAPQDVVAAIRAVHSGQRYIASDIAQQMALGQLE------ 127

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K       
Sbjct: 128 --PPAETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDV 185

Query: 235 GAIAYAVRNNI 245
                A+R+ +
Sbjct: 186 ELTHLAIRHGL 196


>gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 198

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  ++                   GA    +++ +
Sbjct: 1   MKLLVAEDQSMLRDALCQLLLMEDDVDEILQAGD---------------GAQAIGILQVE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +            +    +    F  +           
Sbjct: 46  NVDVAILDVEMPKKSGLDVLEWIRK---------HKEMKVIIVTTFKRVGYFERAVKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       + +   +  +    +    + +                 +    +D  L+
Sbjct: 97  DAYVLKDRSTSELMTTIHTVLAGKKEYSPELM-----------------ETMMTQDNPLS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  IS GKT+ EIA  L +S  TV NYI+SI+ K +   R  A   A  +  V
Sbjct: 140 QQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEAARIAEEHGWV 198


>gi|297191953|ref|ZP_06909351.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151144|gb|EFH30977.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 232

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 62/240 (25%), Gaps = 25/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + V  +      +  +                    G     L   
Sbjct: 14  PVRVLLADDETLMRAGVRAILAADPGVEVVAEAGD---------------GRQAVELALG 58

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +           +          V      +    F             
Sbjct: 59  HRPDVALLDIRMPRLDGLAAAEELRR--------VAPGTAVVMLTTFSEDEYVERALGAG 110

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +   + D   +  G+         +  +    +  L    A               L
Sbjct: 111 VSGFLLKSGDPRELIAGVRAAAEGAACLSPEIARRV--LDRLGAGRMSRAAEARAALEPL 168

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TGRE E +  +  G ++ EIA  L +   TV  ++++++ +   + R      A    +V
Sbjct: 169 TGREREVVALVGAGLSNAEIAARLFVVEGTVKAHVSAVLARLELRNRVQLAILAYEAGVV 228


>gi|255282962|ref|ZP_05347517.1| DNA-binding response regulator VraR [Bryantella formatexigens DSM
           14469]
 gi|255266501|gb|EET59706.1| DNA-binding response regulator VraR [Bryantella formatexigens DSM
           14469]
          Length = 206

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +D   T+ +  +      +  +                T   G     L    
Sbjct: 1   MNILLIDDDALVTTALKTILETDGEIKVIG---------------TGSSGREAVALYARL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D    +                 L    F      I       
Sbjct: 46  QPDILLMDIRMKDMDGIDASAEILRQ--------FPHAKILLLTTFSDDEYIIRALKTGT 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D A I   +  +     +   +       +      + +       + + + 
Sbjct: 98  RGYLLK-QDYASILPAIHAVCNGQTVFGSE-------IIHRVPELLQQKKPFDYQKYGIG 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E E +  ++ G ++ EIA  L +   TV NY+++I+ K   + R+    +  ++
Sbjct: 150 QKEFEIIKAVANGYSNREIADKLFLGEGTVRNYLSTILDKLNLRDRTQLAIFYYQH 205


>gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 221

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 78/196 (39%), Gaps = 11/196 (5%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
            +T   G     ++          D ++     +DLVR +            +    +F 
Sbjct: 29  VVTAANGKQALEMLNRYQPHLLITDIVMPEMDGYDLVRQVRQQ------PAFRLLPVIFL 82

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
              +   E I       + Y S  F++  +   +  L  + ++I  D       +     
Sbjct: 83  TGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLLDRMQMIQTD-----WHIRTKSQ 137

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +   +   + + LT RE E LT +++G ++ +I   L +S  T+  Y++S+++KT  
Sbjct: 138 ARGEMETLAAYQQWGLTQREQEVLTLLTKGLSNAQIGDRLHLSARTIEKYVSSLLQKTEV 197

Query: 231 KTRSGAIAYAVRNNIV 246
             R+  + +A+ ++++
Sbjct: 198 HNRAELVRFALEHHLL 213


>gi|251798213|ref|YP_003012944.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545839|gb|ACT02858.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 243

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 64/221 (28%), Gaps = 33/221 (14%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
            T      +  + +  GA      R        LD  + +    +  R +          
Sbjct: 23  TTFDEFEVVATVCD--GAEAVDYCRSHEVDVALLDVRMPNMNGVEATRLLTEQT------ 74

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
              +   L    F      +         Y     D  +IR  +  ++    ++    L 
Sbjct: 75  ---KAKPLILTTFDDDEYILEAVRSGARGYLLKNNDPEKIRNAIKSVYNDHHVLQDVVLN 131

Query: 161 EIGLLA----------------AYQANMFKSYDVHWGKDFEL------TGREVECLTWIS 198
           +I                     +                +L      T RE+E +  I+
Sbjct: 132 KIKSNLLTGVQVNPPTGNETHNGHAVIDPVQPAAVPSSGSDLIDRSLFTERELEIMAQIA 191

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G ++ EI+  L IS  T  NYI SI+ KT  + R+    Y
Sbjct: 192 RGLSNKEISKKLFISEGTTANYITSILNKTGLEHRTQIAIY 232


>gi|315605040|ref|ZP_07880094.1| two component system response regulator [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313319|gb|EFU61382.1| two component system response regulator [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 216

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 27/229 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGAS------------HFLLVRWDLFQEQKLDSIVS 79
           +  R++ +D        + A  E  GA                  R        LD  + 
Sbjct: 1   MTIRILVIDDHPMVRAGVRAELENSGADLEVVGDASDVEGAVAACRALRPDVALLDVHLP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                        +E       ++    L   V  +  + +         Y + +     
Sbjct: 61  G------GNGGGGAEVASSCRDVEGLNFLALSVSDSAEDVVQVIRAGARGYVTKSISTPD 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWI 197
           +   +  +                 LA +  + F          +   L+ RE E +  I
Sbjct: 115 LVEAIGRVAAGDAAFSPR-------LAGFVLDAFGTGEVSAADTELDLLSAREQEVMRLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T  E+A  L IS  TV  ++++++RK     R+    +A++ +IV
Sbjct: 168 ARGYTYKEVAHDLFISIKTVETHVSAVLRKLQLSNRNELTRWAMQRHIV 216


>gi|284989608|ref|YP_003408162.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062853|gb|ADB73791.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 212

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 21/224 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   +     +  + E   G     +V         +D  +    
Sbjct: 3   TRVLVVDDHPVVRGGLVGWLDAQPDLTVVGEASDGLEALAMVASLDPDVVLMDLRMPRMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               +  +A +              L    + T  + +   A     Y      + ++  
Sbjct: 63  GVAAIERLAGTH--------PGVRVLVLTTYDTDADIVRAVAAGATGYLLKDAPLPQLAD 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        ++          +AA   +  ++           T RE+E L  ++ G T
Sbjct: 115 AVRAAARGETVLAP-------PVAARLVSRLRAPAAEAP-----TARELEVLAGVARGLT 162

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI   L I   TV  ++  +  K     R+ A+  AV   ++
Sbjct: 163 NAEIGRELFIGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL 206


>gi|282863886|ref|ZP_06272944.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561587|gb|EFB67131.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 66/241 (27%), Gaps = 31/241 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +  + +  +           R+              
Sbjct: 3   EDGKITVFLLDDHEVVRRGVHELLSVEEDIEVVGEAGTAADALARI-------------- 48

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    + D  +      D        E       ++            L + I   
Sbjct: 49  ------PATRPDVAILDVRLPDGSGVEVCREVRSGDEGIKCLMLTSYADDEALFDAIM-- 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGK 182
               + Y         +   +  +     ++                   +        +
Sbjct: 101 -AGASGYVLKAIRGNELLSAVRDVAAGKSLLDPVATAR-------VLERLREGKSGGDDR 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  R
Sbjct: 153 LAGLTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLAKLGMERRSQAAAYVAR 212

Query: 243 N 243
            
Sbjct: 213 L 213


>gi|239986838|ref|ZP_04707502.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 215

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 27/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  ++    + +  +    + +  +                    GA    +VR  
Sbjct: 1   MRVVLADDERMVRTALRVILDAEEGIEVVGEATT---------------GAEAVSVVREL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +           P  +    F              
Sbjct: 46  RPDVVLMDVRMPEIDGIRATEQILSTL---EDP----PRIVVVTTFENDAYVYDALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   + L+     ++    +  +    A +        V       LT
Sbjct: 99  AGFLLKRAAAEELVQAVRLVACGDSLLYPAAVRTLAAEHAARRPARAPAWVAR-----LT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G T+ EIA  L +   T   ++A+++ KT  + R+ A+  A  +  +
Sbjct: 154 DREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGFI 212


>gi|226328939|ref|ZP_03804457.1| hypothetical protein PROPEN_02841 [Proteus penneri ATCC 35198]
 gi|225202125|gb|EEG84479.1| hypothetical protein PROPEN_02841 [Proteus penneri ATCC 35198]
          Length = 212

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 24/224 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +             G   +  +  D      +D  + 
Sbjct: 4   VALVDDHIVVRSGFAQLLMLEPDIHIVGE-----YSNGQEAWPYLAHDDIDVAVMDLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L   +     D           +   ++ T     +        Y +       
Sbjct: 59  GESGLQLQNRLKQKRPDF--------RTIILSIYDTPAFVQSALDSGARGYLTKRCGPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +  D +  +           +           LT RE E    + +
Sbjct: 111 LVQAVRAVHQGGCYLCSDAMKAL-----------RHTPEKEDALHSLTPREREIFNLLIQ 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G     IAV L +S  TV+ + A+++ K   +T    + +A++ 
Sbjct: 160 GVNVKTIAVQLNLSHKTVHVHRANVLGKLGCETTIDLVHFALKK 203


>gi|312199045|ref|YP_004019106.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311230381|gb|ADP83236.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 222

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 62/234 (26%), Gaps = 25/234 (10%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
                 R   V   P   D L  M   +  V             GA    L         
Sbjct: 8   ADAPRIRLLVVDDHPVVRDGLIGMFAREPDVEVVGEAAE-----GAQAVQLAARLRPDVI 62

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +        +R +A                L    + T    +         Y  
Sbjct: 63  LMDLRMPGMDGVTAIRELARGG--------AGARVLVLTTYDTDSHVLPAIEAGATGYLL 114

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +        ++       +               V   +   L+ RE+E
Sbjct: 115 KDAARDDLLRAVRAAARGEAVLAPSVAATLM------------NRVRTPETGPLSQRELE 162

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  ++ G T+  +A  L ++  TV  ++ +I  K     R+ A+A A    ++
Sbjct: 163 VLQLVAAGATNRVVAAQLFVTEATVKTHLLNIYAKLGVNDRAAAVAEAFGRGLL 216


>gi|159037234|ref|YP_001536487.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916069|gb|ABV97496.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 245

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 63/239 (26%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + +S +   +  L  +                    G      V   
Sbjct: 30  VRVLIVDDDPLVRAALSMIIGGAPDLVVVGEATD---------------GTEVPAAVAAC 74

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  +              L    F    + +       
Sbjct: 75  APDVVLMDIRMPRLDGLAATEELRSAPNPPE--------VLVLTTFDADEQVLRALRAGA 126

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A I   +  +     ++      ++         +         +   L+
Sbjct: 127 GGFLLKDTAPAEIVHAVRRVAAGETMLSPTVTRQLVAHVTGAVGVDPRRQRARRQLATLS 186

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    + +G+++ EIA  L +S  TV  Y++ ++ K     R           +V
Sbjct: 187 EREREVAIALGQGRSNAEIAGELFMSVATVKAYVSRLLVKLDLNNRVQVALLVHDAGLV 245


>gi|303242530|ref|ZP_07329009.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302589948|gb|EFL59717.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 214

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V  L    D L  M+  D  +             G   F L +        +D ++ 
Sbjct: 4   VMIVDDLVIFRDTLKYMLDHDPGIEVVGGASN-----GFEAFELCKRMQVDLVLMDILMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +  R +     +           +    F              + Y         
Sbjct: 59  DCDGVEGTRLIKQHFPNI--------KIIILTTFQDDENVSNSLKNGADSYVLKDISAVE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           +   +  ++    II ++   ++   L   + +  +          +L  RE++ +  + 
Sbjct: 111 LIHAIKSVYQGYNIIQKNIFEKVVQKLDGNEPHNLEESTALA----KLNEREIKVIQLVV 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GK++++IA  L ++  +V N ++S++RK   K R     +AVRN +V
Sbjct: 167 DGKSNNQIAEELFLTEGSVRNIVSSLLRKLDLKDRVQLAVFAVRNKLV 214


>gi|302531276|ref|ZP_07283618.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302440171|gb|EFL11987.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 229

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 10/231 (4%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLD 75
           E+    V  +    D     +     +     +  + +   G S     R        LD
Sbjct: 7   ERGDRRVIRVLIADDQEMVRMGFRMILDAQDDIEVVADVPDGISAVSKARELRPDVCLLD 66

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      ++ R +A    D           +    F       T      + +     
Sbjct: 67  IRMPGLDGLEVTRQLA--GPDVADP----LKVVVVTTFDLDEYVHTALRNGASGFLLKDA 120

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   +        ++       +     +      +          LT RE++ + 
Sbjct: 121 GPALLIEAVRAADRGDALVSPQITVRL---LKHFDGGNTAKREAPAPSEPLTARELDVVK 177

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G T+ EI   L +S +TV  ++AS+  K   + R    A+A R+ +V
Sbjct: 178 AAARGLTNTEIGAELFLSLSTVKTHLASVQGKVGARNRVEIAAWAWRSGVV 228


>gi|302035956|ref|YP_003796278.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604020|emb|CBK40352.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 212

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 74/242 (30%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +   ++  +       V  L     L + +  +         +               
Sbjct: 1   MNKCRCLITDDHPIVRRGVRELLEEEQLCSEISEVRTGEEALEAVRRQ------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
               +    LD  +      ++++   L +       L        P        +    
Sbjct: 49  ---PWDLMILDIALPDKHGLEVLKETKLLQ-----PSLPVLMLSLYP---EKEFAMRAIK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y +     + +   ++ +   GR I      ++  +            V      
Sbjct: 98  AGASGYLTKQSAPSELLAAVLRVLQGGRYITAALAEQMASVI--------ETGVDGSLHA 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L  + +GK+   IA  L +S  T++ Y A I+ K + ++    I YA+   
Sbjct: 150 RLSDRELQVLRLLGQGKSVSVIAEELRLSVKTISTYRARILEKLSCESTGELIRYAIEAR 209

Query: 245 IV 246
           ++
Sbjct: 210 LI 211


>gi|120436463|ref|YP_862149.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117578613|emb|CAL67082.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 61/237 (25%), Gaps = 33/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  + +     +  L    D    +                                
Sbjct: 4   TIIIVDDHKLFAQSLQILVNSFDGFEVIEVCKNGEELVNYFQ-------------AGNMK 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +  +  D+          L   V       I        
Sbjct: 51  PDLVLLDMRMPVMDGMATMHWLKKNRPDQ--------KVLTLTVDQEDETIIKMLRLGCR 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D       L  +   G              +    +   S +    K  ELT 
Sbjct: 103 GYLLKDIDPEEFEHALNAIDRSGYY------------SNKTISEALSKEEQKQKYEELTA 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE+E L       T   IA  + +S  TV NY  S+  K   K+R G + +A++  I
Sbjct: 151 REMEFLNHACSELTYKAIAGEMNLSPKTVENYRESLFSKLRVKSRVGLVIFAIKEGI 207


>gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       +   +     +  + E   G +    VR        LD  +     
Sbjct: 3   RLLVVDDQTLVRQGIRGLLELAPDVDVVAEADDGLAGLAAVREHDPDVVLLDLRMPRHDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+  +   E D           L    F      +   A     Y      +  +   
Sbjct: 63  LWLLEALRAGELD--------VPVLVLTTFDDDELALAAIAAGARGYLLKDVTLDSLVDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L   G ++       +  L A +A      D   G   ELT RE+E L  ++ G ++
Sbjct: 115 VRTLAGGGTLVQPAITERV--LRAVRAGSVPLDDAAAGDVQELTSRELEILRLLAAGYSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV N++++++ K  T+ R+ A+  A+ + ++
Sbjct: 173 REIAEALHLAEGTVKNHVSTVLLKLGTRDRTRAVLRALHHGLL 215


>gi|163787697|ref|ZP_02182144.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877585|gb|EDP71642.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 217

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + E     +  +   +  +  +            +  L+              
Sbjct: 9   IEIAITDDHELVLEGIKSMLQDTKEVEVVSTFSNAKQTLKGLDDLS-------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      DL + +                 +                   
Sbjct: 55  -VEVLLLDINLPDTNGIDLSKQLLKK--------FPDLKIIALTSHDDASFAKRMLKNGV 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   L  +      + +D       ++              G + +LT
Sbjct: 106 HGYLLKNTDKIELLRALKTVLSGEIYLQKD-------MSDRLLYQRSKPKAKNGLNIKLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ISE  T+ +I+  L IS  TV  + ++I+ K   K   G I  A+ N ++
Sbjct: 159 RREHEVLIAISEELTTQQISEKLFISPKTVETHRSNIILKFGAKNSVGIIKMAIENGLL 217


>gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum]
          Length = 245

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              +      + G   +  +  +  +    + ++ S+   +       +   +   V+  
Sbjct: 15  IKSQFDTALSHYGDIKYAYMVLNKKKPT--EILIISNHHDEWREIYQANNYQQIDPVVIA 72

Query: 105 PTELFCPVFHTLPENIT------------PPAGMDNRYCSLTFDVARIRIGLMLLFPKG- 151
                 P        ++                + N Y  +  D     + L ++  +  
Sbjct: 73  ALNKITPFPWDEDLLVSTQLKMSKIFNLSREHNITNGYTFVLHDHNNNLVMLSIMIDESN 132

Query: 152 ----RIILRDRLWEIGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWIS 198
                 ++     ++ +                     D         + RE E L W S
Sbjct: 133 VNNIDDVIESNKDKLQMTLMNIHAETISLYREMIRSKEDERSNDKDIFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+IL I   TV  +I ++++K        AI   +   ++
Sbjct: 193 MGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIELQLI 240


>gi|70732928|ref|YP_262699.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68347227|gb|AAY94833.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 209

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDLVVVGEASNGEQLLETLRQV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIPRIRALSNPP--------AILVLSMHDEAQMAARALKIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D + +   +  +   GR I  D    +                       L+
Sbjct: 99  AGYATKDSDPSLLLTAIRKVASGGRYIDPDLADRMVFEVGLTDTRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHKLL 209


>gi|225020543|ref|ZP_03709735.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679908|ref|ZP_07402718.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224946673|gb|EEG27882.1| hypothetical protein CORMATOL_00550 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660528|gb|EFM50025.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 232

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 17/219 (7%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 +    + VG +  +L      +    D ++      D      +        V 
Sbjct: 14  AGVKAEIGKAVDIVGEAGTVLDAITNIRNTTPDVVLLDVHMPDGGGVAVIQGVVNGS-VA 72

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL--- 159
             P  L   V     + I+        Y + +     +   +  ++    +         
Sbjct: 73  TIPKFLALSVSDAAEDVISVIRSGARGYVTKSISGPELVDAIARVYDGDAVFSPRLAGFV 132

Query: 160 --------WEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEI 206
                      G+         K+ +       +     LT RE+E L  ++ G T  EI
Sbjct: 133 LDAFARPDARAGVGVVDAPERDKAVEQGHPPIDDPIVDALTRRELEVLRLLARGYTYKEI 192

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L IS  TV  + ++I+RKT    R     +A   ++
Sbjct: 193 AGQLFISIKTVETHASNILRKTQQSNRHALTRWAHSRDL 231


>gi|254382332|ref|ZP_04997692.1| response-regulator protein [Streptomyces sp. Mg1]
 gi|194341237|gb|EDX22203.1| response-regulator protein [Streptomyces sp. Mg1]
          Length = 221

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 58/225 (25%), Gaps = 15/225 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                      L  ++     +             G     L R        +D  +   
Sbjct: 1   MAEDQSAVRAGLVLILGSAGDIEVAGEA-----ADGEEAVRLARELRPDLVLMDVRMPRL 55

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +                 L    F                +     + A + 
Sbjct: 56  DGVSATRQVVAEGLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNAEAAELI 106

Query: 142 IGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +  +     +I       +    AA +                LT RE E L  + EG
Sbjct: 107 EAVRTVGRGEGLIAPAVTRRLIAEFAAPRPPRPAVPPETAAAVASLTRREREVLGRLGEG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ EIA  L ++  TV  +++ ++ K   ++R+ A   A    I
Sbjct: 167 LSNAEIAGRLELAEGTVKTHVSRVLGKLELRSRAQAAVLARELGI 211


>gi|312138551|ref|YP_004005887.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|311887890|emb|CBH47202.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
          Length = 245

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + L  + E     +  L   +  L  +           R+                  
Sbjct: 37  TRVFLVDDHEIVRRGLVDLLGSAPDLTVVGEAASVGEAMARI---------------PSS 81

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +          VL     L    F              
Sbjct: 82  GADVAVLDVRLPDGNGVELCRDLRT--------VLPDLRCLMLTSFADDEALFDAVMAGA 133

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   G ++       +              +       EL+
Sbjct: 134 SGFVLKQILGTDLISAVRTVGAGGSLLDSRATAALMQRM--------RSERTADPLAELS 185

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E      I +G T+ EIA  L ++  T+ NY++ ++ K   + R+ A   A   
Sbjct: 186 DQERAVFDLIGQGLTNREIAERLFLAEKTIKNYVSRLLAKLGMQRRTQAAVLATEL 241


>gi|91792794|ref|YP_562445.1| response regulator [Shewanella denitrificans OS217]
 gi|91714796|gb|ABE54722.1| two component transcriptional regulator, LuxR family [Shewanella
           denitrificans OS217]
          Length = 214

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E   + +  +      +  +                    G +     R +
Sbjct: 2   ISVYLVDDHELVRTGIRRILEDERGIKVVGEAPD---------------GETAVQWSRHN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +          ++    +   P                
Sbjct: 47  EADVILMDMNMPGMGGLEATRKI--LRYQPDAKIIVLTVQTEDPF------PTKVMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +   ++ L      + F   D        L+
Sbjct: 99  SGYLTKGSTSPEVLRAIQQVARGQRYLSPEIAQQMAL------SQFSHTDD--NPFVNLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I+ G+  ++I+  L +S  TVN+Y   +  K            A+R  ++
Sbjct: 151 ERELQIMMMITSGEKVNDISEKLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRYKML 209


>gi|284028619|ref|YP_003378550.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283807912|gb|ADB29751.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 218

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 64/226 (28%), Gaps = 12/226 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSD 81
           ++ L    D       L   +     +  + E    +     VR        +D  +   
Sbjct: 1   MTRLLIVDDEALVRAGLKMILESADDLQVVAEAEDGADAAAMVREHRPDVVLMDIRMPRL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +            + P  +    F              + +         + 
Sbjct: 61  DGLAATREIQALP--------EPPKVVVLTTFDLDDYVFRALQAGASGFLLKDTPPRELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEG 200
             + ++     ++       +  +  + A+       +   +   LT REVE L  +  G
Sbjct: 113 QAVRVVAAGDAMLSPAVTRRL--IGHFAADQRTDRQRLAKQRLSRLTDREVEVLVAVGRG 170

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +I   L +S  TV  +++ ++ K     R      A    ++
Sbjct: 171 LSNADIGRSLFMSEATVKAHVSRVLVKLDATNRVQVAILAHEAGLL 216


>gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales
           bacterium HTCC2083]
 gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 244

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 19/222 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
               +T  +  L E +   +      +   +Q    I  + +                  
Sbjct: 23  TEEGFTSYLNDLCENLELDYATYCAVNTVSDQ---VIGFTTYDDAWKEHYTSQRFQNIDP 79

Query: 101 VLQRPTELFCPVFHTLPENITPPAGM----------DNRYCSLTFDVARIRIGLML---- 146
            L  P     P+             +          D                + +    
Sbjct: 80  TLHLPMRSIAPIDWQRLREHRDFDRVFEHARDFKIKDQGLSVPIHGPYGEVGLISVTRDC 139

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVECLTWISEGKTSD 204
                  + ++ + E+   A    +     D      +  +L+ RE E L W + GK+  
Sbjct: 140 SLGTWEKLRKNVITELQTAAVSLHDTVMQSDTLGYALRRPQLSSRECEVLQWTAAGKSQI 199

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I VIL IS  TV  ++ S   K +  +   A+  A+    +
Sbjct: 200 DIGVILTISSRTVEVHLRSARSKLSALSTPQAVGRAIGMGFI 241


>gi|94985808|ref|YP_605172.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94556089|gb|ABF46003.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 221

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 20/222 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S   ++  + E   G                +D ++     
Sbjct: 11  RVLLVDDHAVVRQGLRLFLSLDSQIEVVGEAANGEEALAAAERLHPDVVIMDLMMPVMDG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +     D           +         +           Y         +   
Sbjct: 71  IQATRLLRRQHPDTE--------VIALTSTLEEHKVNGAIDAGAMGYMLKDASSDTLADA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +  +    +           + +     ++  LT +EV  L  I+ G ++
Sbjct: 123 IHAAARGEVRLHPEAARRL----------VRDFRTPEMRET-LTPKEVIVLQLIARGYSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA   G++  TV  +++ ++ K   ++R+ A  YA+R+ +
Sbjct: 172 RDIARDQGVTEATVKTHVSRLLGKLGLESRTQAALYALRHGL 213


>gi|262191657|ref|ZP_06049834.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT
           5369-93]
 gi|262032446|gb|EEY51007.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT
           5369-93]
          Length = 201

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L          LD  +      D +  +   E D           +   V  + 
Sbjct: 30  GAEAIALAHDLQPDLILLDLNMKGMSGLDTLTALRTDECD--------AYVVILTVSDSA 81

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +         + Y     +  ++   L       +                      + 
Sbjct: 82  ADIQALVKAGADGYLLKDTEPDQLVALLKQAMQGEKAFSESVER-----------YLLNR 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE++ ++ +++G  + +IA  L IS +TV  ++ S+++K    +R+ A
Sbjct: 131 EHTSNPFEALTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190

Query: 237 IAYAVRN 243
               +  
Sbjct: 191 TILYLER 197


>gi|229526804|ref|ZP_04416208.1| transcriptional regulatory protein UhpA [Vibrio cholerae bv.
           albensis VL426]
 gi|229336962|gb|EEO01980.1| transcriptional regulatory protein UhpA [Vibrio cholerae bv.
           albensis VL426]
          Length = 208

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 25/226 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +       +      A     +         +D  +  
Sbjct: 5   ALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFHA-----LTQAEVDVAIIDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +             R   +   ++ +              Y S     + +
Sbjct: 60  ENGLSLLERLRQHN--------PRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSEL 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +  D L  +            S         +LT REVE    + +G
Sbjct: 112 VSAIRTVASGRRYLCADALVNL------------SNPDINNVLADLTKREVEVFDLLVQG 159

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K   EIA  L +S   V+ + A+I+ K         I +A++++++
Sbjct: 160 KEVKEIAQTLFLSHKAVHVHRANILSKLNLTNNVDVIRFALQHHLL 205


>gi|315106440|gb|EFT78416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 206

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 60/235 (25%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +             G     LV+      
Sbjct: 1   MIDKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGR-----GDEVVGLVQDTYADV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +       +V  +                 L    F                + 
Sbjct: 56  CLLDIEMPGLDGITVVAELRDQAPW--------CRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+GRE 
Sbjct: 108 VKDTPAEDLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSGRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R   +
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 211

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L +R    + +       S  + +  L               
Sbjct: 2   ITLILADDHPLTMEGLKALLSREGDFSVLGEYADGESALLGITEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +       + + +   +             L    +   P          
Sbjct: 47  RPQVALLDIRMPILDGVAVAKRVTDLKLPTAC--------LMLTSYDAKPYVAASMRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     I   +  +      +  +    +                  G   EL+
Sbjct: 99  KGYVLKSSPPEVICEAIRTVSRGRLFLDLEASDLV----------------SSGPTEELS 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   S G  S EIA  L IS  TV  ++ASI  K   + ++ A+   +++ I+
Sbjct: 143 QREREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGARNKTEAMLLGLKHGIL 201


>gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 241

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 75/230 (32%), Gaps = 15/230 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
             +    +    +    +  L    G              +     V + +P   V    
Sbjct: 10  FESAFEQIKAAANVDAAIRILQTEYGLDFVTYHLAQTIAAKIDSPFVRTTYPDAWVSRYL 69

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIR 141
           L+   K   ++++  E   P   +  E                   N Y     D A+ R
Sbjct: 70  LNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRR 129

Query: 142 IGLMLLFP----KGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTW 196
             L L       +   ++R    E   +A                    L+ RE+ECL W
Sbjct: 130 ALLSLNARIPAEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPSLSPREIECLHW 189

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 190 TALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 240

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 23/244 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++       L + 
Sbjct: 4   AMTESATKDLLIQQMVSTITELDGQTAIEKALQWLRRECDSERAMFYQFKGP---MLLTF 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITP 122
           ++S+      +     E      V++                        +    +    
Sbjct: 61  ITSNVDDAWGQAYRQHELITQDPVIR-CYRNQLGFLNWQDAFKQYPASACYEEAVDACEL 119

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              +   Y S           +  L    R I  ++ + +  L     ++ +        
Sbjct: 120 LPAISYGYTS-HCRGTESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKF---S 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+ 
Sbjct: 176 SRGLTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALC 235

Query: 243 NNIV 246
             ++
Sbjct: 236 RGLI 239


>gi|294054984|ref|YP_003548642.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614317|gb|ADE54472.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 215

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 26/222 (11%)

Query: 36  MIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDL----------FQEQKLDSIVSSDWPF 84
           +  ++   +    M  A+ +       L                     LD ++ +    
Sbjct: 4   VAIIEDQTAIREMMSQAILDRDEFEVVLECGDGQIGLERTLELKPDFVILDVMLPNLNGT 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++R +A          L     L    + T            + +      +  +R G+
Sbjct: 64  EILRRLAKE--------LPDARVLIFSGYQTPGLVRELLQAGAHGFVEKAAPLTELRKGI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            ++   G     +        A    +              LT RE + L  I+E  ++ 
Sbjct: 116 EIVSSGGSYFGPEV-------ALLLRDAMADPKSKESGINILTKRERQILQLIAESNSTR 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS  T  N+  ++MRK      +    YA+ + ++
Sbjct: 169 EIASKLDISVKTAENHRTNLMRKLDLHDVASLTRYAINHGLI 210


>gi|302533152|ref|ZP_07285494.1| two-component system response regulator [Streptomyces sp. C]
 gi|302442047|gb|EFL13863.1| two-component system response regulator [Streptomyces sp. C]
          Length = 216

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 28/240 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++    + +  +      +  +       S    +  L              
Sbjct: 2   PVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGASVIPLVRRL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  S       V   P  L    F             
Sbjct: 48  -RPDVVAMDVRMPLLDGIEATRAVLRS-------VDSPPKILVVTTFENDEYVYQALRAG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       + I   + L+     ++    +  +       A           +   L
Sbjct: 100 ADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALA------AEYGNREARAVLERAAL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  ++ G T+ EI+  L +   TV +++++++ K   + R+ A+  A  +  V
Sbjct: 154 TEREEAVLRLMARGLTNVEISRELIVGTETVKSHVSAVLGKLGARDRTQAVIAAYESGFV 213


>gi|238799115|ref|ZP_04642570.1| Response regulator uvrY [Yersinia mollaretii ATCC 43969]
 gi|238717023|gb|EEQ08884.1| Response regulator uvrY [Yersinia mollaretii ATCC 43969]
          Length = 206

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 18/192 (9%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G       R  +     +D  +      +  R +     D           +   +  
Sbjct: 22  QCGEDAVKWCRSHVVDIVLMDMNMPGIGGLEATRKILRYSPD--------TKVIMLTIHT 73

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y S       +   +  +    R I  D   ++ L          
Sbjct: 74  ENPLPAKVMQAGAGGYLSKGAAPQDVVAAIRAVHSGQRYIASDIAQQMAL---------S 124

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             +      F  L+ RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K      
Sbjct: 125 QLEPPAETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGD 184

Query: 234 SGAIAYAVRNNI 245
                 A+R+ +
Sbjct: 185 VELTHLAIRHGL 196


>gi|256372218|ref|YP_003110042.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008802|gb|ACU54369.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 223

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 65/236 (27%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     ++ L    D    +           R+                  
Sbjct: 2   VRVFLVEDHEVVRRGIARLVAEDDGFEVVGEAGSLEEARARI---------------PLA 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +  +  +           L    +              
Sbjct: 47  APDVAVLDVRLPDGSGVELCRELRAARPELRC--------LMLTSYADDEALFASIMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      V  +   L  +     +I       +     +        D       EL+
Sbjct: 99  SGYLLKRVRVDELLDALRRVAKGESLIDPALTVRLLERIRH------PQDAGDDPLAELS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E      I +GKT+ EIA  + ++  TV NY+++I+ K     RS   A   R 
Sbjct: 153 PQERRIFDLIVDGKTNREIAESVFLAEKTVKNYVSNILSKLGMHHRSEIAALGARL 208


>gi|239993641|ref|ZP_04714165.1| LuxR family transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 209

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       VS +   +  ++ +   D  V+    +  L+              
Sbjct: 3   IRVVLADDHVLMRQGVSQMLNANPDISVVGECDDGVALIAAVLKLS-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +  +     D           L   + + +           
Sbjct: 49  -PDVILMDISMPRMSGLVAIDKILSQRSD--------AKILVLSMHNEVEYIEAMRDAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +         +             +       H      LT
Sbjct: 100 KGYILKESSGESLVEAIKKVAANKTCFPDELTQ----------SSSDQCQKHVSPLSVLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +  G TS +IA +L +S  T  N+ ++I +K    + +  I  A +  ++
Sbjct: 150 RREREVFFLVVAGNTSKKIAELLDMSLKTAENHRSNIYKKLNLSSSAELIRMAGKAGLL 208


>gi|254390344|ref|ZP_05005561.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704048|gb|EDY49860.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 221

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +  D +  +          +R+ A            
Sbjct: 3   EEGKITVFLLDDHEVVRRGVHELLSVEDDIEVVGEAGTAEDAMVRIPAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   +++           L    F          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCREIRSRDENIKC--------LMLTSFADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y         +   +  +     ++       +        N          K 
Sbjct: 100 MAGASGYVLKAIRGNELLTAVREVAAGKSLLDPVATARVLARLRDGNN-----PKGDDKL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R 
Sbjct: 155 AALTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVARM 214


>gi|146310654|ref|YP_001175728.1| transcriptional regulator FimZ [Enterobacter sp. 638]
 gi|145317530|gb|ABP59677.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 78/242 (32%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  +I++  E       +  L  ++  +A  +    +      +               
Sbjct: 1   MKPASIIIMDEHPIVRMSIEVLLEKNKNIAVKLKSGDSHEVLDYIR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  ++    F L++ +            +    LF               
Sbjct: 47  -NYPIDLVILDIEMTGSDGFTLLKRIKNLN--------ESIKVLFLSSKSESFYAGRAMR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D++ I   + +L         + L       ++  +           D 
Sbjct: 98  AGANGFVSKRKDLSDIYNAVEMLLSGYSFFPYETL-------SFINHHGSHKGALN--DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L +++ G ++ EIA  L +S  T++ + ++I  K   +T    I YA  + 
Sbjct: 149 PLSNREVTVLRFLANGLSNKEIAEQLLLSNKTISAHKSNIYTKLGVQTIVELIDYAKAHE 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 250

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 76/249 (30%), Gaps = 21/249 (8%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---LF 69
             ++   T+  SH         R++ +D        + A  E  G      V  +     
Sbjct: 7   ADQEPPATAEASHPTP------RLLLVDDEPGLRSAVQAYLEDEGFDVTTAVDGEEGFAK 60

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
            +Q L  +V SD          L  + +    L     +F        +         + 
Sbjct: 61  AQQLLPDLVISDVMMPRCDGYGLLSRMREDERLGGTPVIFLTAKGMTADRTQGYLAGVDD 120

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-------- 181
           Y    FD   +   +  +  +   +L +            A                   
Sbjct: 121 YIPKPFDPEELVARVRNVVRRQDRLLAEAARFADADVGQMARQINEIRSMLSGAAAEAVA 180

Query: 182 ----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  +
Sbjct: 181 AAEAPQLSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELV 240

Query: 238 AYAVRNNIV 246
            +A+++ +V
Sbjct: 241 RFALQHRLV 249


>gi|291614729|ref|YP_003524886.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
 gi|291584841|gb|ADE12499.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
          Length = 690

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 14/231 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVR 88
            D    ++ +        R   +    G  +FL       +        V + +P   + 
Sbjct: 3   HDDFKSLLEVRNEAELRQRAQEVVVGFGFDYFLYATGLKMENSTTSFTKVITTYPAAWIE 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFD-V 137
               +        ++   E   P   +                   G+ +      FD  
Sbjct: 63  KYVSAGYASIDPAVRHSMERRTPYIWSAEAFESAGAGLMFEDARHHGIVSGMSVPLFDSA 122

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVECLT 195
           +    G+ L          + +  + L A Y    +    V     +D  L+ +E  CL 
Sbjct: 123 SNSIGGMGLACRSETCRGLEDIGRVVLFALYFQEAYSRIAVPFLHDEDGVLSRQEGACLG 182

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           WIS+G    +IA  L +    V   +  ++ K    +   A+A+A    ++
Sbjct: 183 WISDGLDVAQIAQRLALPEAEVQQLLEQVLHKLDASSLPQAVAHAFAGGLL 233


>gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae]
          Length = 210

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   EI     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|152061171|dbj|BAF73629.1| response regulator GacA [Pseudomonas syringae pv. tabaci]
          Length = 222

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   D       +   L               
Sbjct: 10  IKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKAREL--------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R M  S        ++      C      P          
Sbjct: 55  KPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ L +           V+      L+
Sbjct: 107 AGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF-------QPQVNNSPFDLLS 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 160 EREIQIALMIVGCQKVQTISDKLCLSPKTVNIYRYRIFEKLSISSDVELALLAVRHGMV 218


>gi|15800094|ref|NP_286106.1| putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 EDL933]
 gi|15829672|ref|NP_308445.1| transcription regulator [Escherichia coli O157:H7 str. Sakai]
 gi|168761556|ref|ZP_02786563.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|168786197|ref|ZP_02811204.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|168800234|ref|ZP_02825241.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|217324617|ref|ZP_03440701.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|261223843|ref|ZP_05938124.1| putative transcription regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256051|ref|ZP_05948584.1| putative transcription regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281271|ref|YP_003498089.1| putative response regulator [Escherichia coli O55:H7 str. CB9615]
 gi|12513205|gb|AAG54714.1|AE005216_2 putative response regulator; hexosephosphate transport [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359875|dbj|BAB33841.1| putative transcription regulator [Escherichia coli O157:H7 str.
           Sakai]
 gi|189368080|gb|EDU86496.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC4501]
 gi|189373654|gb|EDU92070.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC869]
 gi|189377424|gb|EDU95840.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC508]
 gi|217320838|gb|EEC29262.1| transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. TW14588]
 gi|290761144|gb|ADD55105.1| Putative response regulator [Escherichia coli O55:H7 str. CB9615]
 gi|320192773|gb|EFW67413.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. EC1212]
 gi|320638355|gb|EFX08069.1| putative response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320643736|gb|EFX12859.1| putative response regulator [Escherichia coli O157:H- str. 493-89]
 gi|320649086|gb|EFX17664.1| putative response regulator [Escherichia coli O157:H- str. H 2687]
 gi|320655979|gb|EFX23895.1| putative response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662536|gb|EFX29925.1| putative response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665106|gb|EFX32199.1| putative response regulator [Escherichia coli O157:H7 str. LSU-61]
 gi|326341121|gb|EGD64913.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1044]
 gi|326346104|gb|EGD69843.1| Transcriptional regulatory protein UhpA [Escherichia coli O157:H7
           str. 1125]
          Length = 209

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +  +  +         +  D      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAW-----SALIRDDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +         +   +   ++       +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQK--------PQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVGLGGHYLCADAIRAL-----------RGGGQPAQALEILTPREREVFELL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 158 VKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|323357741|ref|YP_004224137.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274112|dbj|BAJ74257.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 224

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 66/233 (28%), Gaps = 21/233 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R   +          + ++     +        +    G     ++         L
Sbjct: 6   ASPIRVVVIDDEALIRTGFSYILNAAADIDV------VATADGVGAIDVLEATHPDVVLL 59

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       ++R +     D         T      F +         G    +    
Sbjct: 60  DIRMPGRDGLSVLREIRARGWDM--------TVAILTTFDSDDHIAAALDGGAAGFLVKD 111

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
            D  ++   +  L   G +        +       A   +       +  E LT RE E 
Sbjct: 112 TDPRQLPQLVRTLHGGGVVFSPTVSRAV------VAGYLRPETGGDTRLVEGLTEREKEI 165

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +  G ++ +I   + +S  TV  +I++I+ K   + R  A   A R  ++
Sbjct: 166 LVHLGRGLSNAQIGSEMFLSPATVKAHISTILSKLGVEGRVSAALIAERAGLL 218


>gi|167551640|ref|ZP_02345394.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205323615|gb|EDZ11454.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 212

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +            LD  +      D++      +  + +  +          +   
Sbjct: 38  GLEVYNACCAYEPDILILDLSLPGINGLDII-----PQLHQRWPAMNIL---VYTAYQQE 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   N Y   +     +   L  +    R I      E  L            
Sbjct: 90  YMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAIL---------AEL 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE + L  I EG T+  I+  L IS  TV  +  ++MRK      +  
Sbjct: 141 NADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 200

Query: 237 IAYAVRNNIV 246
           + YA R  ++
Sbjct: 201 LNYARRMRLI 210


>gi|152981542|ref|YP_001354963.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281619|gb|ABR90029.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 320

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 26/243 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +D      +S    +   L  +  L    S    +   T             
Sbjct: 92  PITVLVVEDDALTRRTLSLAIEKEPSLKLLDALSDVKSALSWLEQQT------------- 138

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   +D  +      D++R  A                        + ++I      
Sbjct: 139 --VELLLVDLDLPDGSGIDIIRYCAHRH-----PACNIMVITTSSDQDNVLDSIE---AG 188

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYDVHWGKD 183
            + Y     D   I   L+ L   G  I      ++           +          + 
Sbjct: 189 ASGYVLKDADRLDIVRALLDLHAGGSPISPTIARKVLGRVRDGKKAPDAVSDASGAETEQ 248

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE   L  I+ G +  E+A  L +S  T+  +I +I  K +  +R  A+  A R 
Sbjct: 249 VALTKRESTILDLIARGDSYGEVARQLSLSVGTIQTHIKNIYDKLSVHSRGEAVYEANRR 308

Query: 244 NIV 246
            ++
Sbjct: 309 GLL 311


>gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 210

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 25/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
                 V   P   D +  ++  D  +S      +     G      V         LD 
Sbjct: 6   PATVFVVDDHPVVRDGVTLLLRSDPCLSVVGSAES-----GRLAIERVAALAPDLILLDL 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      ++V  +          V      +           +       +        
Sbjct: 61  RLPDMLAPEVVTELRR--------VHPEGKIVVFTAHGDHQGVLAALESGAHGCLLKDAA 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A++   L  +    R++    L + G  +   A               LT RE E L  
Sbjct: 113 GAQLVTELRRVLRGERVVDPRILPDAGQRSDALAR------------SGLTRREYEVLRL 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++G+T+ EIA   G++RNTV  Y+ S + K   + R  AI  A    ++
Sbjct: 161 AAQGQTNPEIAESTGLARNTVKTYLQSALHKLGARNRVEAIGKASEAGLL 210


>gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 230

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 65/224 (29%), Gaps = 13/224 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +            L   +     +  + E   G     L R  L     +D+       
Sbjct: 14  RILVVDGQPLLRTGLRTVLGTEADLDVVAEASNGTEAVELTRRLLPDVVLMDARTPPRAG 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +  S              L           +         + +     A +   
Sbjct: 74  VVATRAIVESGLP--------VRVLILTTSDFDAYVVGALRAGARGFLAKDVPSADLSAA 125

Query: 144 LMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +     ++    L   +  LA    +              LTGRE E L  ++ G++
Sbjct: 126 IRAVAAGDAVVAPRILDRFLDHLAELLPDPAAGPTRLLDP---LTGREREVLIQVARGRS 182

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  ++  ++ K   + R  A+  A  + ++
Sbjct: 183 NAEIAQALSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYESGLI 226


>gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 73/226 (32%), Gaps = 21/226 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V      ++  A ++ L+  ++        T+ +      LV         LD  +   
Sbjct: 10  IVDDNSLFAEGTASLLSLESEIAIAGIAKNATDCLQ-----LVMSVHPDVVLLDINLPDA 64

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               L+  +  ++ +           +    + +            + + S       I 
Sbjct: 65  SGISLISKIKRAKPNTC--------IIMLTGYSSNEYIDASLKEGASGFLSKDCSKQDIM 116

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQAN--------MFKSYDVHWGKDFELTGREVEC 193
           I +       +   R  L  +   ++   +          KS          LT RE +C
Sbjct: 117 IAIKQGLIAEKYPSRILLKNLMKTSSKDKSIEGSGSLVFQKSNSNIINDTTLLTSREKDC 176

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L  I EG  + EIA  LGI+  TV  ++ +I+ K   K+R  A+  
Sbjct: 177 LKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGVKSRLEALLK 222


>gi|296128509|ref|YP_003635759.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020324|gb|ADG73560.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 211

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 22/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R       P   +  A ++     +         T   G     LV         +D  +
Sbjct: 3   RVVVADDQPVVLEGFAAILGAAADLEVVG-----TAPDGVELVDLVTRTRPDVAVVDVRM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R +  +    +         L    F              + +       A
Sbjct: 58  PQLDGIAATRRIRDAHPATH--------VLMLTTFDLEEYVADALQAGASGFLLKDVPAA 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R+  G+ L+     ++       +       A+  +       +    T RE E L  ++
Sbjct: 110 RLVEGVRLVAAGALLLGPRVARRLA------ADGPRRPVPGLDRV---TAREREVLAAVA 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ E+A  LGI   TV  +++ ++RK   + R+  +  A    +V
Sbjct: 161 QGLSNAEVAARLGIGEQTVKTHVSELLRKLGRRDRAQLVVAAYEGGVV 208


>gi|284040245|ref|YP_003390175.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819538|gb|ADB41376.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 223

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 68/242 (28%), Gaps = 29/242 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +       +  L      +  +            + ++              
Sbjct: 2   PIRILIADDHSVVRKGIRMLLEDETDIQIVGEASDGDEAIDLLASIG------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      + ++ ++       Y  ++                +      
Sbjct: 49  --TDVLLLDITMPRMSGIEALKVISKK-----YPAVRTLMFSM---HSNPDYIVKAVQHG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDR----LWEIGLLAAYQANMFKSYDVHWGK 182
              Y      +  +   +  +         +     +  + L  A              K
Sbjct: 99  AAGYLLKDTGLEEMLRAVRTVVDGDLYYPPNASSVIIRSLVLPNANLTKEPAKAGGSVSK 158

Query: 183 DF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                +T RE + LT + +G +S EIA   GIS NTV N  ASI+RK   K  +  I  A
Sbjct: 159 SIWNRITSREGQVLTCLIDGMSSPEIAEKFGISPNTVANQRASIIRKAGVKNTADLIRLA 218

Query: 241 VR 242
           + 
Sbjct: 219 LE 220


>gi|313837084|gb|EFS74798.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314927887|gb|EFS91718.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971857|gb|EFT15955.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907346|gb|EGG27112.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 210

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 58/228 (25%), Gaps = 22/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R       P     +  ++  D  +          + + A+    +   L   Q      
Sbjct: 4   RVLIADDHPVVRAGVTALLGTDPNIEIVATAATPAQALAAAATADLDLVLLDLQFSS--- 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   V              +          + T  + +         Y        
Sbjct: 61  -DTDAPSGVDVTRKIRSQPNPPEVLIL-----TNYDTDADILAAVEAGATGYLLKDAPAE 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +         +       +                       LT RE++ L   +
Sbjct: 115 ELLSAIHRSARGEGALAPAVATRL-------------MARMRSPQTSLTARELDVLEASA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ +IA  L +S  TV  +++ I  K    +RS A+A A    ++
Sbjct: 162 GGLSNAQIAQSLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGLI 209


>gi|300790143|ref|YP_003770434.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799657|gb|ADJ50032.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 217

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 11/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +S    +  + E   G S   + R        LD  +    P 
Sbjct: 4   LMFADDEELVRSGLRAMMSGAQDIEIVGEASDGRSAVEVARRYHPDVALLDIKM--RAPD 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +           +          F              N +     D A +   +
Sbjct: 62  DGIRALRAILALPDPPTVA-----MLTTFDIDEYVSLALRLGANGFLLKDIDPAALLRAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   G ++          +     +  ++          L+ RE E +  I +G ++ 
Sbjct: 117 RDLSRGGAVLDPGVAAR---MVQSHRDEQRAAQPARKLLASLSEREREVVALIGQGLSNA 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   L +S  TV  Y+++++ K     R  A   A R  ++
Sbjct: 174 EIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGLL 215


>gi|146277715|ref|YP_001167874.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555956|gb|ABP70569.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 210

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 72/246 (29%), Gaps = 36/246 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    Q++++++  + E      S     S  +     +    S    +  + E      
Sbjct: 1   MTQMPQKLSVLIADDHEMVVEMFSLFLAASSEM----TVRTAKSLDEALERIKE------ 50

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                   F    LD  +        +         K    +   T    P         
Sbjct: 51  -----HGPFDVTLLDLNMPGMNGVAGLTRAIKLSAGKP---VAILTSNPTPR-----MVD 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   +     T  V  +   +  +      +  +   +                   
Sbjct: 98  EILAAGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARD-------------RRQAPD 144

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT +E+  +++++EG+ + EIA  L ++  T+  ++ SI +K     R+ A+  A
Sbjct: 145 SSGGRLTEKEMLVMSYLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTA 204

Query: 241 VRNNIV 246
               I+
Sbjct: 205 RNLGII 210


>gi|134101735|ref|YP_001107396.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914358|emb|CAM04471.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 230

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + +VL  ++      +  L  +   +  +            +               
Sbjct: 10  QRPIRLVLADDEVMLRRGLRVLLEQGGRIRVVAEAGNGEELLAAVR-------------- 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + S      +R +          VL          F           
Sbjct: 56  -GHRPDVVLVDVQMPSKDGLSALRDLRAMAAPPIAAVL--------TTFDLDDYVAEALR 106

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N +     D A +   ++ L   G ++       +        +      +      
Sbjct: 107 LGANGFLLKDADPAVLVRAVIDLAAGGAVLDPRITARLLPRFRNLGDSADEVRLVR---- 162

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L+ RE + L  +++G+++ +I   LG++  TV +Y+++++ K   + R  A   A R
Sbjct: 163 TLSARERQVLFLLADGRSNADIGDRLGLTEATVKSYVSTVLGKLGAENRVQAALIAQR 220


>gi|117164632|emb|CAJ88178.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 217

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 52/204 (25%), Gaps = 17/204 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        L E  G      +          +D  + +    
Sbjct: 11  LLIVDDHPVVRDGLRGMLEPADGFTVLGEASGGTEAVEMTLRLDPDVVLMDLRMPAGSGV 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +  +             R   L    + T  + +         Y         +   +
Sbjct: 71  EAIAELTRRG--------ARARVLVLTTYDTDSDTLPAIEAGATGYLLKDALRDELFAAI 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +                    D  L+ RE++ L  ++ G ++ 
Sbjct: 123 RAAAEGRTVLSPTVASRLVT--------AVRGPARRPVDDTLSARELQVLEHVARGTSNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKT 228
           EIA  L IS  TV  ++  I  K 
Sbjct: 175 EIARELFISEATVKTHLTHIYDKL 198


>gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 277

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 70/215 (32%), Gaps = 15/215 (6%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  L    G              +     V + +P   V    L+   K   ++++  
Sbjct: 61  AAIRILQAEYGLDFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLLNSYVKVDPIVKQGF 120

Query: 107 ELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           E   P   +  E                   N Y     D A+ R  L +          
Sbjct: 121 ERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNARIPADHWA 180

Query: 157 DRLW----EIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           + +     E   +A                    L+ RE+ECL W + GK   +I+VILG
Sbjct: 181 ELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLHWTALGKDYKDISVILG 240

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 241 ISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 275


>gi|309791785|ref|ZP_07686273.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226191|gb|EFO79931.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 205

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 16/211 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   +        + E   G +  L  R        LD  +      +  R +A +  
Sbjct: 4   QGLREILERKGGFRVVAEVSDGEAAVLQARVQRPNIALLDVSMPGLTGIEAARQIATAS- 62

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +   +       +       N Y     D + +   + ++      + 
Sbjct: 63  -------PHTRSVILTMHRDERTILEALRAGANAYLLKDADASELIEAIRVVHRGDATLA 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                     AA   ++ +  +        LT RE + L  +++G  +  IA+ L +S  
Sbjct: 116 GSA-------AARVLDLLRRGEGAVAAADLLTPRERDILALLAQGDDNRAIALKLSLSEK 168

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV N ++ I +K     R+ A   AV+  +V
Sbjct: 169 TVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 199


>gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida]
          Length = 235

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L   +              L + +   +  L        Q     + S++P + +   
Sbjct: 7   EYLHAFVSERRPQRLFDIAVHLAQNLDMVYLGLNVRIQIATQTPRLYLYSNYPKEWIERY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
              E  K             PV                    G+ + +     D+     
Sbjct: 67  QRDEFYKQDAAANASHSSTMPVLWNDDLYREAPKFRQAACQYGLCHGWTQSLHDLQHNES 126

Query: 143 GLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            + +  P G I + +       +  L      +      +       +++ RE+E L W 
Sbjct: 127 QISVARPTGTIGITELYDKAGSVQWLCHTLHAVLGEYHLNALCPPQPKMSKRELEVLKWS 186

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT+   ++GA+A A     +
Sbjct: 187 AAGKTAADVACILSLSQSTVNFHIRSVITKTSAANKAGAVAIAALRGWI 235


>gi|271499136|ref|YP_003332161.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270342691|gb|ACZ75456.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 196

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITLALIDDHLIVRSGFAQLLGLEPDMQIVGEFGS-----GREALAGLPGRGAQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDCTGLELLGQLP-----------KGMAVIMLSVHDSPALIEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVRTVAGGGCYLTPDIALKLA----------------SGRRDPLTRRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G     IA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMAVKTIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|171058278|ref|YP_001790627.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775723|gb|ACB33862.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 209

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +         +  +            +   T              
Sbjct: 2   IRVMLCDDHALIRRGIRDTLAEQPDMEVVGEAGEYGELRALLRKQT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +           ++       P        +       
Sbjct: 48  -CDVLVLDINMPGRSGLDVLHALKEEGSP-----IRVLIVSMYP---EDQYALRALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A+I     ++    + I  +    +       ++              L+
Sbjct: 99  YGYVNKGSDPAQIVAAARMVAQGRKYITAEMAQMLVENLTTPSSEAAHDK--------LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ LT I+ GK   +IA  L +S  TV+ Y A ++ K      S    YA+RN +V
Sbjct: 151 DRELQTLTMIASGKRLSDIAEELTLSPKTVSVYRARVLEKLGLANNSELTVYAIRNGLV 209


>gi|323528489|ref|YP_004230641.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323385491|gb|ADX57581.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 215

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 20/221 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D       L   +     +  + E   A     L          +D  ++   
Sbjct: 9   ARLILVDDHPLVRDGLRARLEAVRNLEVVGEAGNAQEALALAASHEPHLVLMDVGMNGMN 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L               ++            L           + Y         I  
Sbjct: 69  GIALAGMFHERF-----PGIRVLMLSM---HDNLEYVTQAVRAGASGYVLKDSPATEIIQ 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +                                      LT RE + L  ++EG +
Sbjct: 121 AISAVLDGKTYFSAG-----------LGARLIQASAMQSPVERLTPRERDILDALAEGLS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           S +IA    +S  TV  +  ++ RK   + ++  I +AV N
Sbjct: 170 SKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|114764255|ref|ZP_01443483.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543203|gb|EAU46220.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 234

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 65/234 (27%), Gaps = 18/234 (7%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L+     R   V   P   D L   +              L + +  +     + +   
Sbjct: 7   LLSESRPIRALVVDDHPLFCDALTLTLQSISDFEEIRSAGTLEKALEIT----AQGEAPD 62

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      D +                            +           N +
Sbjct: 63  LVILDLNLPDVHGLDGLVR-----MRNAAPRAAILIASSMADNRMISH---ALKAGANGF 114

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  +  R     +      +        G +   +       D    +   LT ++
Sbjct: 115 VPKHSQRSVFRRAFEAVGRGEPFVPD------GYIDPREPESGAGPDDALARLATLTNQQ 168

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              L+ I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A   N
Sbjct: 169 ARILSLICEGKLNKQIAYDLTIAETTVKAHVTAIMRKLGVHSRTQAVLIAQEAN 222


>gi|15895522|ref|NP_348871.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025256|gb|AAK80211.1|AE007726_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325509670|gb|ADZ21306.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 213

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 74/232 (31%), Gaps = 26/232 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +  D +  +   +       ++                  
Sbjct: 2   IRVMIADDQVIVREGLKKILSLDDEIEVICEAEDGYDVINKLRE---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D I+       +      +   K Y  +     +    F              
Sbjct: 46  ----HIVDIILMDVRMPKMDGIKTTNLVKKQYPKINI---IILTTFDEDEYIFNGIKSGI 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     ++  I   +   +    +       ++ + A   +N   S +        LT
Sbjct: 99  SGYLLKDSEIDYILKSVKEAYNNKMMFDPVVTPKL-VNALNLSNNINSTNKEI--LSVLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE+E    ++ GK++ EI+  L IS  TV NYI+ I++K   + R+  +A 
Sbjct: 156 EREMEITKLVTSGKSNKEISETLFISEGTVKNYISKILKKLKLQRRTQLLAI 207


>gi|332993141|gb|AEF03196.1| two component LuxR family transcriptional regulator [Alteromonas
           sp. SN2]
          Length = 214

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +  +       + +                    G     L R +
Sbjct: 2   IKIILADDHDLVRRGIRRILEDVVDFSIIAEAKN---------------GEDAVQLCRKN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +            +    +   +    P  +       
Sbjct: 47  APDVVLMDVNMPGIGGLEATKRIVRMS--------ENTRVICLSMHKESPIPMQVMNAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   +   +   +  +    + I  +    I +         K          +L+
Sbjct: 99  FGFLTKDAEPEEVIRAIHKVVGGQKYIDSEVANSIAI--------DKLSPNSDNPFNDLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+     +++GK   +IA  L I+  TVN Y   +  K    T       A+R+ ++
Sbjct: 151 DRELSIALRLTKGKRVPDIATELSINAKTVNTYRYRMFEKLGVTTDVELTHLALRHKLI 209


>gi|313820373|gb|EFS58087.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313822823|gb|EFS60537.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|314925260|gb|EFS89091.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
          Length = 210

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +     + V+ L      +  +              A  +       L    D
Sbjct: 3   VRVLIADDHPVVRAGVTALLDTDPDIEIVATAATPSEAL-AATATVDLDLVLLDLQFSSD 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D         +    + L+                     T  + +       
Sbjct: 62  ADAPSGVDVTRKIRSQPNAPEVLILTNY------------------DTDADILAAVEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +                       LT
Sbjct: 104 TGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRL-------------MARMRSPRTSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   ++G ++ +IA  L +S  TV  +++ I  K    +RS A+A A     +
Sbjct: 151 ARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVSSRSAAVAKARDIGFI 209


>gi|188994767|ref|YP_001929019.1| probable DNA-binding response regulator LuxR family [Porphyromonas
           gingivalis ATCC 33277]
 gi|148524521|dbj|BAF63428.1| fimR [Porphyromonas gingivalis ATCC 33277]
 gi|188594447|dbj|BAG33422.1| probable DNA-binding response regulator LuxR family [Porphyromonas
           gingivalis ATCC 33277]
          Length = 227

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 73/245 (29%), Gaps = 28/245 (11%)

Query: 8   VNIVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++IVL  + E  R    + +     L   +            +    E            
Sbjct: 2   ISIVLVDDHELYRVGLRAAISQMQGLAEIVGECSSCEELETFLKEQKE------------ 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                     I+   W  D        +  K Y  ++           T+ E +      
Sbjct: 50  -------PGLIILDIWLPDGNGVNIARKLKKLYPAVKIIILSSEVSEKTVNELLAID--- 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-----AAYQANMFKSYDVHWG 181
              Y   T  +  I   +  +        +     I  +     A       K       
Sbjct: 100 VEGYICKTAQINDIGNAIRTVTTGSHFYGKSVSKMILDICVSRSADQSHKKSKKQQQQQN 159

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              ELT RE E + ++ +G ++ E A  + +S  TV  + ++I+ K      +  I YAV
Sbjct: 160 DSSELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFSNAAELIRYAV 219

Query: 242 RNNIV 246
           ++ +V
Sbjct: 220 KSGLV 224


>gi|254427699|ref|ZP_05041406.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196193868|gb|EDX88827.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 217

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    + L  +   +           L               
Sbjct: 2   IKVLVVDDHDLVRTGIARMLGEVEGLRVVGEANSGELAVQMARELA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +  R +          V +    +   +    P          
Sbjct: 48  -PEVVLMDLKMPGIGGLEATRKLLR--------VDEGVRVIAVTMCEEEPFPSRLMKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D+  +   + ++    R I  +    + L                     L+
Sbjct: 99  AGYMTKGADLEEMVRAIKVVATGQRYISPEIAQAMAL--------KPYTGDEGSLLDMLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  I       ++A  L +S  TVN Y   I  K    +       AVR+ ++
Sbjct: 151 ERELQIMMMIVNCHKVQDVADKLCLSPKTVNTYRYRIFDKLGVTSDVEMALLAVRHGML 209


>gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 217

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           + +    D       L   +     +  + E                   +D  +     
Sbjct: 5   TRILLADDHALVRRGLRMILDAEPDLTVVAEA----ADGTEAVAAATAGGVDLAILDIAM 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +    A  +  +    ++         +              + Y   +     +   
Sbjct: 61  PQMTGIQAARQISRSAPDVRILILSM---YDNEQYFFESLRAGASGYVLKSVADRDLIEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                     +    +  +           +  D        LT RE +    I+EG ++
Sbjct: 118 CRASMRGESFLYPGAVTALI---RDYLERDRRGDRMPNS--ILTPREEQITKLIAEGNST 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV+ + A++++K   + R     +A+R  ++
Sbjct: 173 KEIADALKISIKTVDRHRANVLQKLGLRDRLDLTRFAIRTGLI 215


>gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 216

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 6/158 (3%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +   +  K          +F   F              + Y     D   I   +   F
Sbjct: 62  GIDALKYIKID--YPHAKIIFLTTFLDQEYIKDSIKYGSSGYILKD-DFENICPAIRAAF 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDE 205
               +        + L A       +   +   K+     L+ RE++ L  I++G ++ E
Sbjct: 119 AGQNVFGNKVFDSLSLAAKEVDEDTEGSSIKGKKENLTKVLSEREIDVLELIADGLSNKE 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  L +S  TV NYI+SI+ K   + R+    Y +++
Sbjct: 179 IAGKLYLSEGTVRNYISSILVKLDLRDRTQLAIYYLKS 216


>gi|213970476|ref|ZP_03398604.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301383864|ref|ZP_07232282.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060596|ref|ZP_07252137.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134766|ref|ZP_07260756.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213924794|gb|EEB58361.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQAL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPGLKVVIFTMDDSTDHLEAAISAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIDGLQRVARGEEALNSAVSARL------LRRMTERNTSGASAPEALT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
 gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915]
          Length = 259

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 66/230 (28%), Gaps = 25/230 (10%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 21  QSDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 80

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLT-FDVARIRIGLMLLFPKGR 152
              V Q            +   L E+      +           +  + I +    PKG 
Sbjct: 81  IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSACNPKGV 140

Query: 153 I----------------ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
                             L      +  LA                   LT REV+CL W
Sbjct: 141 AGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRW 200

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 201 AANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium
           petroleiphilum PM1]
          Length = 237

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 17/228 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++       +   +    + +G      +          + +   + P      +   + 
Sbjct: 9   VLEARNRDEFRGEVVRFAKRLGFETVSAITVVDHPVGDTEFVAIDNAPDAYKDAIEDPKA 68

Query: 96  DKYYNVLQRPTELFCPVFHTLP----------ENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +   V+Q       P+                      G     C            + 
Sbjct: 69  GQLDPVMQHCKRQSVPIIWDQSTYVSAGQGSMWEAQARFGFRTGICLALHMPEGRHFVIG 128

Query: 146 L----LFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTWIS 198
           +      PK R  +   + ++ L A +  +        +    +  +LT RE++ L W  
Sbjct: 129 VDRDQALPKDRGEVTRLVADLQLFAVHAQDTAMRVLVPERLQLERPKLTPRELDSLRWTM 188

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GKT+ E+  I+GIS  T   +I + M K A   +  A+  A+R  ++
Sbjct: 189 DGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALRLGLL 236


>gi|312130002|ref|YP_003997342.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906548|gb|ADQ16989.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 219

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 63/226 (27%), Gaps = 18/226 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                P  +D L  ++  + + +    +       G      V+         D  +   
Sbjct: 8   IADDHPMVADSLGLLLESEPSFNIVGVVNN-----GWQAIQFVQKYGVDIVLADLQMPLL 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++   +             +   +   +                 Y   +     + 
Sbjct: 63  NGLEMAEKLKEQ--------FPKTKVVILTMSEDSQNIKAALTLGIEGYILKSATKTELI 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEG 200
             +  +    R         I  +     +          ++   LT RE E +  ++E 
Sbjct: 115 QCIKEVSEGKRYFSE----RIEKILNQIPSEATPSGKLASEEIKSLTRREKEIIRLVAED 170

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +IA  L I+  TV  +  ++M+K    +    I   ++  I+
Sbjct: 171 MSNAQIAETLHIAPTTVETHRRNLMKKLGVNSAVALIKLGMKYGII 216


>gi|332669618|ref|YP_004452626.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338656|gb|AEE45239.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 3/202 (1%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               + A    VG +  +     +  E +   ++                  +  ++   
Sbjct: 26  VKASLDAGVRVVGEADDVESAVRVVHELQPPVVLLDVHLPGGDGGGGAEVIRRCTDLQGT 85

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   V     + +         Y +   D   +   +  +     +        +  
Sbjct: 86  TRFLALSVSDAAEDVVAVIRSGARGYVTKAIDGGELSDAVRRVAGGDAVFSPRLAGFVLD 145

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                A    + D    +   L+ RE E +  I+ G T  E+A  L IS  TV  +++++
Sbjct: 146 AFGAAAGDVATGDDELDR---LSAREREVMRLIARGYTYREVASELFISVKTVETHVSAV 202

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           +RK    +R     +A    ++
Sbjct: 203 LRKLQLSSRHELTRWAAARRLL 224


>gi|332526411|ref|ZP_08402533.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332110543|gb|EGJ10866.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 211

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
            +    D       +  T+S    +  + E         L+R        LD  +     
Sbjct: 3   DVILCDDHALIRRGIRDTLSDAPDIRVVGEAGDYGELRTLMRGTSCDVLVLDINLPGRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +           ++       P        I    G    Y +   +  +I   
Sbjct: 63  LDALHALKDEGSP-----VKVLIVSMYP---EDQYAIRALRGGAFGYVNKGGEPRQIVDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + +  +    +            +  V      +L+ RE++ L  I+ GK  
Sbjct: 115 VRTVAQGRKYVTPEIAQMLV--------ESLTAPVLETPHQKLSDRELQTLVMIASGKRL 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y A ++ K      S    YA+RN +V
Sbjct: 167 ADIAEELMLSPKTVSVYRARVLEKLQLANNSELTVYAIRNGLV 209


>gi|311896181|dbj|BAJ28589.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V     + A+ E   GA    L R        +D  +     
Sbjct: 3   RVLVADDQALVRGSFRLLVDSAPDLTAVGEAADGAEALELARAQRPDVVLMDIRMPRLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +           L     L    F                +       A +   
Sbjct: 63  IEATRAITA------DPALAGVRVLVLTTFDLDDYAFAALRAGAAGFLLKDTRPAELLDA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++     ++       +  +  Y      S           T RE E L  +  G ++
Sbjct: 117 VRVVAAGEALLAPRVTRRL--IEEYTRRPEPSALPAPAALAGATEREREVLALVGLGFSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L +S +T   +I  +++K A + R+  +  A  + +V
Sbjct: 175 EEIAAELHVSLSTAKTHIGRLLQKLAARDRAQLVIAAYESGLV 217


>gi|307325965|ref|ZP_07605164.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306888457|gb|EFN19444.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 259

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 61/237 (25%), Gaps = 25/237 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + E     +  L      L  +                          + R 
Sbjct: 39  PIRVFLLDDHEVVRRGLRDLLDAESDLKVVGEAANARE-----------------AIARA 81

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              + +     V      D      +    +    L     L    F             
Sbjct: 82  PAVRPRVAVLDVRLGSSGDGGDHEGIEVCRELRARLPDLACLMLTSFDDDEALFDAIMAG 141

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              Y     + + +   +  +     ++                   +        + E 
Sbjct: 142 AAGYVLKQINGSDLVSAVRTVAGGRSMLDPGATAR-------VMARLRGPAPSGPVELEN 194

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L  I +G T+ +IA  L ++  TV N I++I+ K     R  A   A R
Sbjct: 195 LSPREREILQLIGDGLTNRQIAERLFLAEKTVKNRISAILSKLGVGRRIQAAVIAER 251


>gi|255039276|ref|YP_003089897.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254952032|gb|ACT96732.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 212

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 31/243 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             +Q   I+L  +       +  L      L     +         +             
Sbjct: 1   MTLQPGKILLVDDHRIFNDGLKRLIDEEPSLTVCGQVYDPKDIFTAIEK----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      DL R +            Q    +   ++  L      
Sbjct: 50  ----CKPDLLLLDINLLGQNGIDLGRKVLAQN--------QGIRVIVLTMYDQLKLLDEA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y       A +  G+  +   G             L          +   + +
Sbjct: 98  RRAGMHGYLLKDSTTAVLLKGINTVLSGGTYFES--------LTKKVNGGAGDFGDTFTQ 149

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E + +I +G T+++I+  L +S  TV  +  +I  K      +  I +A++
Sbjct: 150 KLNLTFREIEIIGFIKKGYTNEQISAALNLSFFTVKTHRKNIHFKLGINNVAELIEFAIQ 209

Query: 243 NNI 245
           N I
Sbjct: 210 NGI 212


>gi|18699286|gb|AAL78509.1|AF456804_1 probable transcriptional activator TraR [Sinorhizobium meliloti]
 gi|38374154|gb|AAR19282.1| TraR [Sinorhizobium meliloti]
          Length = 234

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
                 L+  +            +       G   F  ++ + FQ +       + +P  
Sbjct: 2   HREVRSLIDMLEAAQDEQMIKSALRNFAHACGYDRFAYLQKEAFQVKT-----FNSYPGS 56

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCS 132
                  S+      V+          F                  +     G+      
Sbjct: 57  WEGIYLGSDYSSIDPVVTEAKRRGDVFFWTADDWPARGSSPLRRFRDEAIDHGIRCGVTM 116

Query: 133 LTFDVARIRIGLMLLFPKG-----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                    + L    P+        +   +  ++ +   Y+  M  +      K   L+
Sbjct: 117 PVEGSYGSAMMLTFASPERNIDISGALDPKKAIQMVMTVHYRLKMIAAKTAVNPKQM-LS 175

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+ CL W + GKT+ E A++ GI+  TV +Y+     K   ++    +A A    +V
Sbjct: 176 PREMLCLVWATRGKTAPETAMLTGINPRTVQHYLDKARAKLGAESVPQLVAIAKDRGLV 234


>gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein
           [Sinorhizobium meliloti 1021]
 gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family,
           regulator of sinI [Sinorhizobium meliloti 1021]
 gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 245

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 70/229 (30%), Gaps = 22/229 (9%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                   +   M         SH L +  +   +      +   +        A     
Sbjct: 17  GGCADPERFFALMRR---TFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLY 73

Query: 97  KYYNVLQRPTELFCPVFHT-----------LPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +L+       PV              L E                   A     L 
Sbjct: 74  RIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLA 133

Query: 146 LLFP----KGRIILRDRLWEIGLLAAYQANMFKS----YDVHWGKDFELTGREVECLTWI 197
           +       +     R  L +  L A                   +D  LTGRE E LTW 
Sbjct: 134 IGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWS 193

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK+  EIA ILGIS  TV  ++ +  RK    + + A+A+AVR+ ++
Sbjct: 194 AAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 242


>gi|311898395|dbj|BAJ30803.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 222

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 62/237 (26%), Gaps = 27/237 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     + +  +    D L  +                    G     L    
Sbjct: 2   IRVLVAEDQAAVRAALVMILRAEDDLEVVGEAAD---------------GEQAVRLALEL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +  +              L    F              
Sbjct: 47  RPDVVLMDIQMPRLDGVAATRQVVAAG---------AAQVLVLTTFDLDAYVWGALRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     +   +  G+  +     ++       +    +  A       V  G    LT
Sbjct: 98  AGFLLKDLEAEALVDGVRTVARGDGMLAPSVTRRLI---SSFARPGAPDPVGPGALDGLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E E L  +  G ++ EIA+ L  +  T   +++ I+ K   ++R  A   A    
Sbjct: 155 PKEREVLGCLGAGLSNAEIALRLRTAEATTKTHVSRILAKLGLRSRVQAAILAQELG 211


>gi|224825157|ref|ZP_03698263.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224602828|gb|EEG09005.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 215

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 55/230 (23%), Gaps = 27/230 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +     +       +     G     L          +D 
Sbjct: 11  RIRLVLVDDHPLVRDGLRARLSSVPRLDVVGEAGS-----GREALELADTLRPDIMLVDI 65

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       L   +                 +   ++       +        Y      
Sbjct: 66  GMRDMNGIQLTAALRERH--------PGVVVVILSMYDNAEYVSSAVRAGARGYVLKDAP 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +      G          +                   +   LT RE E L  
Sbjct: 118 SQEIIAAIEAAVAGGSYYSHAVTHALI--------------EPAPQPDPLTEREREVLLL 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G ++  +A  L IS  TV  +  ++ RK   +  +  + YA+    +
Sbjct: 164 LAAGHSNKMVAASLEISVRTVEAHRLNLRRKLGAENVAALVKYAMERGWI 213


>gi|329768816|ref|ZP_08260247.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
 gi|328839589|gb|EGF89164.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325]
          Length = 199

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D +A ++ ++ ++        L    G     ++         LD  
Sbjct: 1   MRLLIAEDQSMLRDAMATLLLMEDSID-----EVLQAKNGKEAMDILVDSSIDVAILDIE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++  +                 +    F              + Y      +
Sbjct: 56  MPEATGLDVLEFIRNKGIS--------CKVIIVTTFKRSGYFERAIKNNVDAYVLKDRSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    +    + +                 +  +     L+ +E   L  +
Sbjct: 108 DELMKTINNVLAGNKEYSPELM-----------------ENIFTNHNPLSNQEKILLAKV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EG ++ EI+  L +S  T+ NYI++I+ K   K R+ A+  A     +
Sbjct: 151 KEGLSNKEISSELYLSEGTIRNYISNILTKLNCKNRTEAVKKATEEGWI 199


>gi|256375685|ref|YP_003099345.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255919988|gb|ACU35499.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 238

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 73/244 (29%), Gaps = 29/244 (11%)

Query: 7   QVNIVLNREDEQRTSFV--SHLPTRSDLLARMI--PLDCTVSWTMRMYALTEYVGASHFL 62
             N+V +  +E  +  V   H   R  + AR+                A    +      
Sbjct: 19  PANMVPHPREELFSVLVVDDHPLLREAISARLTQMGAGTVHEAASVAEARARAL------ 72

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      DLV  +           +        P         + 
Sbjct: 73  --ATGPCDLAILDLGLPDGTGIDLVTELRAQGW----PRIVVLASSDDPYA-----VRSA 121

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   +     +  G+  +   G          +                    
Sbjct: 122 FQAGAQAYLLKSASPMVVTDGVRRVLDGGVYADPSVAPVLA--------AGTRVPGTDNT 173

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A+R
Sbjct: 174 PRELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAMR 233

Query: 243 NNIV 246
             ++
Sbjct: 234 AGVI 237


>gi|318058563|ref|ZP_07977286.1| LuxR family two-component response regulator [Streptomyces sp.
           SA3_actG]
          Length = 235

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 19/238 (7%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + L  + E     +  L      +  +           R+ A               
Sbjct: 6   PVRVFLLDDHEVVRRGLRDLLEAEPDIVVVGEAANAREALARVPAT-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + S    D        E       L          F             
Sbjct: 52  -RPDVAVLDVRLGSATGGDHEGVEVCRELRAELPELACLM---LTSFDDDEALFDAIMAG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
              Y     + + +   +  +     ++        +  +   +           G+   
Sbjct: 108 AAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREPEREKPAPSRALPGELDR 167

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     R  A   A R 
Sbjct: 168 LSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGRRIQAAMIAERL 225


>gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 219

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 64/220 (29%), Gaps = 22/220 (10%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           R++ +D        +  L    G              +           D  +     F+
Sbjct: 3   RILVIDDDPILQKILENLLTQAGYLVAVVLSGKQGLDIWLEFQPDLIVSDVRMPEMDGFE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +      +    L   ++        +   +       + Y +  F++  +   + 
Sbjct: 63  FCRYIRSQPTGQLIPFLFLSSQT------DVEARVEGHFSGADDYIAKPFEMKELLAKIE 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +   I  +            A           +   LT  E+       +G T+ +
Sbjct: 117 RQLARIENIRAEMQR-------LAAQANVEQMKQAPEPLPLTPAEMRVFWEAVQGWTNKQ 169

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+  L +S  TV  +++SI+ K   + RS  + +A  N  
Sbjct: 170 ISEHLYVSPRTVQTHLSSILNKLNLENRSQLVRFAYENGY 209


>gi|59713224|ref|YP_205999.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Vibrio fischeri ES114]
 gi|197336798|ref|YP_002157623.1| transcriptional regulatory protein UhpA [Vibrio fischeri MJ11]
 gi|59481472|gb|AAW87111.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Vibrio fischeri ES114]
 gi|197314050|gb|ACH63499.1| transcriptional regulatory protein UhpA [Vibrio fischeri MJ11]
          Length = 202

 Score =  104 bits (261), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 59/232 (25%), Gaps = 37/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  +     S  + L +    ++ +            +                  
Sbjct: 2   INVALVDDHIIVRSGFAQLLSLESDISVVGEFSSAAEARRGL---------------PSC 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +    L+  +                 +   V  +            
Sbjct: 47  HPDVVILDISMQDESGLSLLEDIPS-----------GIASIMLSVHDSPAMVEKSLELGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +      G  +  D       +A   A   K+          LT
Sbjct: 96  KGYLSKRCSPDELIQAVRTSANGGCYLTPD-------IAIKLATPVKNKTALN----HLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    ++ G     IA+ LG+S  TV+ + A+ M K   K        
Sbjct: 145 RRENEVCQLLATGLDVKSIAIELGLSHKTVHVHRANAMDKLNVKNNVELAKL 196


>gi|111221722|ref|YP_712516.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111149254|emb|CAJ60939.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 181

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 10/172 (5%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           +    V      D        +       +          F       T        Y  
Sbjct: 19  RPKVAVLDARLEDGSGIEVCRQVRSADPGIACL---ILTSFDDEEALFTAIMAGAAGYVL 75

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +     ++       + +         +       +   LT +E  
Sbjct: 76  KQIRGTALVDAVRQVAAGKSLLDPAVTPRVLV-------RLREGPAEDERLAGLTDQERR 128

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  I+EG T+ +IA  + ++  TV NY++S++ K   ++R+ A  +A R N
Sbjct: 129 ILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLAKLGLESRTQAAVFATRLN 180


>gi|134292079|ref|YP_001115815.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135236|gb|ABO56350.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 213

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V+ L  ++     +            +    +             
Sbjct: 1   MKILIVDDHPILRDGVAALLRQNGEDVTVAQAGNADDAMRMLDQSAD------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D +   A          LQ    +         +     A   
Sbjct: 48  -FDAIVLDLKLPGMNGLDAISAFAGK-----CPQLQI---IVLSTSEDAADVRAAFARGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   + ++    R +    L +    ++  A               LT
Sbjct: 99  LGYVPKSAGPHTVLSAIRMVLDGERYVPPLMLDD----SSSAAPGSPRPAPATRSAGPLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R++E L +++EG  +  IA  L +S  TV  ++ +I +      R+ A A A +  ++
Sbjct: 155 QRQIEVLRYVAEGVPNKVIADRLNLSEKTVKAHVTAIFKALNVLNRTQAAAAARKAGLL 213


>gi|319442313|ref|ZP_07991469.1| putative two component response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 213

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +    + +  +   D        +                  
Sbjct: 2   IRVLLADDHAIVRMGLRAVLDSEEDITIVGEADTADDAVRAVENAG-------------P 48

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 +D          +L    + + + +               + T  + +      
Sbjct: 49  DIDVVLMDLRFGPGQSGRELETGASATARIRKLPDPPNVLV--VTNYDTDVDILGAIEAG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       A +   +         +       +       AN              L
Sbjct: 107 AVGYLLKDAPPAELISAVRAAATGATAMSGSVATRLMHREEEPANA-------------L 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  +++G+++ EI   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 TSRELEVLQLVADGRSNREIGATLFLSEATVKSHLVHINTKLGVRSRTSAVAAAREAGML 213


>gi|307324110|ref|ZP_07603319.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890559|gb|EFN21536.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 241

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 64/238 (26%), Gaps = 16/238 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
                  +    D           +     M  + +   G       R        LD  
Sbjct: 1   MRDMTIQVLIADDQEMVRAAFRMILDSQPDMRVVAQAATGVEAVEQARRLRPDVCLLDIR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +A    +           L    F                +       
Sbjct: 61  MPELDGLEATRLLA--GPEVPDP----LNVLIATTFDLDEYVYRALRNGACGFLLKDGAP 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW---------GKDFELTG 188
             +   +        +I       +        +     D                 LT 
Sbjct: 115 GLLTEAVRAAASGNSLISPSVTVRLLAHMGPHRDRSAPSDARPVSRRRGRPEDLIEPLTQ 174

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E +  ++ G+T++E+AV L ++ +TV  ++ ++ RK A + R    A+A  + +V
Sbjct: 175 REREVVRRVARGRTNEEVAVDLHVTLSTVKTHLGNVQRKLAARNRVEIAAWAWEHGMV 232


>gi|159039051|ref|YP_001538304.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157917886|gb|ABV99313.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 221

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 64/240 (26%), Gaps = 35/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L  + +     + H   R      +           +  AL              
Sbjct: 9   RTKVLLVDDHDLIRKGLRHAFERDRQFEVVGEAATAAEGVRQAGAL-------------- 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +  R +  S       VL         ++    +        
Sbjct: 55  -QPDVVIMDLRLPDGSGLEATRALRKSSATMGIVVL--------TMYAGDDQLFGALEAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +   T     +                        LA                  +L
Sbjct: 106 ASAFVPKTAPADEVVAAARHAASSPSAFTAAD------LAEAMKRRLAPSGP------QL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + L  +++G +   IA  L +S +T   +I+ +  K     R+ A+  A+R  ++
Sbjct: 154 SPREGQVLRLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213


>gi|154509662|ref|ZP_02045304.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799296|gb|EDN81716.1| hypothetical protein ACTODO_02195 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 8   VNIVLNREDEQRTSFV-SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + I++  +     + V + L      L  +              ALT             
Sbjct: 3   IRILVIDDHPMVRAGVRAELENSGADLEVVGDASDVEGAIAACRALT------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +              +E       ++    L   V     + +      
Sbjct: 50  --PDVALLDVHLPG------GNGGGGAEVASTCRDIEGLHFLALSVSDAAEDVVQVIRAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDF 184
              Y + +     +   +  +                 LA +  + F          +  
Sbjct: 102 ARGYVTKSIATPDLVEAIGRVAAGDAAFSPR-------LAGFVLDAFGTGEVSTTDTELD 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A++ +
Sbjct: 155 LLSAREQEVMRLIARGYTYKEVAHDLFISIKTVETHVSSVLRKLQLSNRNELTRWAMQRH 214

Query: 245 IV 246
           IV
Sbjct: 215 IV 216


>gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 209

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 24/222 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D  A    L   +S    +  + E         L +        LD  +  +   
Sbjct: 7   LLVVDDHPAFRAGLRSMLSEAPNLEVVAEAASVQETLDLHQQHAPDVTLLDLNLKKESGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +  +          +      +    F    +           Y       + I   +
Sbjct: 67  DAITQLLA--------IKADTRVIVLSTFDMSEDIHLAFKAGARAYLLKDSSRSEIIQAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++   R+I       +    +  A               LT +E+E L  + +G+ + 
Sbjct: 119 EAVYAGERVIPPAIKQRLLEQRSRPA---------------LTAKELEILELVVQGRRNK 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LGI+  TV  ++ ++  K     R+ A   AV   +V
Sbjct: 164 EIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGLV 205


>gi|183984750|ref|YP_001853041.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           marinum M]
 gi|183178076|gb|ACC43186.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           marinum M]
          Length = 216

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 72/243 (29%), Gaps = 32/243 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + ++V +V+  +       V    + S  +  +   D                GA+   L
Sbjct: 5   KTEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADD---------------GAAALEL 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           ++  L     LD  +       +   +  +E             L               
Sbjct: 50  IKTHLPDVALLDYRMPRMDGAQVAAAVRSNELP--------TRVLLISAHDESAIVYQAL 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +         I   ++       ++    +  +   A                 
Sbjct: 102 QQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPMAPV---- 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  I++G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R 
Sbjct: 155 --LSAREREVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQ 212

Query: 244 NIV 246
            ++
Sbjct: 213 GLL 215


>gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
 gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
          Length = 218

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 69/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + E   S +  +      +  +  +    +   +   L               
Sbjct: 1   MRIVIADDHELYRSGMLTVLGDEPDIDIVAEVGSLPAAVAKCVDL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  + ++    P       A            R   L         + +   A   
Sbjct: 46  -----DPNVVILGHRPPRHSGIEACRAISDRAP---RTKSLILTGSGDEGDLVEAMAAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
           + Y    F   +I   L L      +I          +++             G+     
Sbjct: 98  SGYLLKDFPAQQIIESLRLAHRGQALIPLG-------MSSQLIRELSQPRQTPGESTTPR 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+  L  + +GK + EIA  L IS+NTV N+I +I  K    +R     +    
Sbjct: 151 LSDRELGVLQLVGQGKGNKEIAAQLFISQNTVKNHIQNIRNKLNVGSRIELAMHGAEQ 208


>gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 235

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + L   +              L + +   +  L        Q     + S++P + +   
Sbjct: 7   EHLDAFVSERSPKKLFNIAVHLAQDLAMQYLGLNLRIQIATQTPRLYLYSNYPDEWISRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRI 142
              +  K         +   PV  T                 G+ + +     D+     
Sbjct: 67  QRDDFYKQDCAAHLSHQSTLPVLWTDELYHEAPHFREAACQHGLRHGWTQSLHDLQHNES 126

Query: 143 GLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWI 197
            + +  P G I + +       +  L      +      +       +++ RE+E L W 
Sbjct: 127 QISVARPAGSIDINELYEKAGSVQWLCHTLHAVLGEHHLNALCPPQPKMSARELEVLKWS 186

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GKT+ ++A IL +S++TVN +I S++ KT    ++GAIA A     +
Sbjct: 187 AAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGWI 235


>gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 252

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 73/229 (31%), Gaps = 10/229 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVS 79
             ++ +    D     + L      T  +  +             R        +D    
Sbjct: 22  PLITRVLIIGDQDVVRLGLCTAFEATQDIKVVGTTGDLRVAVARARQLRPDVAVVDMAAL 81

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +   ++VR ++          ++            L   ++        Y     D++ 
Sbjct: 82  GERGNEVVRELSEL----DDPRVRVLALAVPSDRDNL---VSCLRAGACGYILTGSDMSV 134

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWI 197
           I   +  L     ++    +  +                        + T RE + +  +
Sbjct: 135 ITDAVRSLREGHTVLDPAVVGTVVEEFVRYEAAVCVGADDPDSCWKEQFTDREKDVVALV 194

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA +LG+S  T+ ++++S++ K   + R   + +A R+ +V
Sbjct: 195 ATGASNAEIAGVLGLSETTIKSHVSSVLAKRGLRNRVQLVVWAFRSGLV 243


>gi|323976153|gb|EGB71246.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 209

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +     +         +  +      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSCAAQAW-----SALTHNDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +             +   ++ T     +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQKPQF--------RAIILSIYDTPTFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +  +        LT RE E    +
Sbjct: 109 EELVQAVRSVGMGGHYLCADAIRAL-----------RGGEQPAQALEILTPREREVFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 158 VKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFALNHHLL 206


>gi|258652221|ref|YP_003201377.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555446|gb|ACV78388.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 219

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     V  +    + L  +           R+ AL               
Sbjct: 2   LTVFLVDDHEVVRRGVGDMLDEEEDLTVVGQAGSVAEALARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +          +L          +      +       
Sbjct: 47  RPDIAVLDMRLPDGNGVELCRELRSRMPTLNCLIL--------TSYTDEQAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++       +        +  ++     G    LT
Sbjct: 99  GGYVIKDIKGMELVSAVRTVGSGRSLLDTRAAAAL-------MSKIRAEAQDPGPLAGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  I +G T+ +I   + ++  TV NY++S++ K   + R+     A   
Sbjct: 152 EQERVVLDLIGQGMTNRQIGERMFLAEKTVKNYVSSVLAKLGMQRRTQVAVLATEL 207


>gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
 gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria
           sp. PCC 6506]
          Length = 224

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 78/226 (34%), Gaps = 12/226 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +        +T   G     LV          D  +     ++
Sbjct: 5   VLVADDDLGTRLSIGDYLEICGY-SVITAQNGKQALGLVEEYQPHLIVTDVTMPEMDGYE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            VR + L          +    +F     +  E I       + Y    F++  +   + 
Sbjct: 64  FVRRVRLR------PAFRLLPVIFLTERTSTQERIRGYQLGADNYLRKPFELEELGAVIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEG 200
            L  +  +I +      G      +            D       LT RE + L  +++G
Sbjct: 118 SLLDRYALIAQAGGQGSGGAGERGSEGAGERGGGGDSDITEKSLSLTQREKDVLQLLTDG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +I   L +S  TV  Y++S++RK+    R+  + +A+ +++V
Sbjct: 178 LSNAQIGDRLHLSHRTVEKYVSSLLRKSDRTNRAELVRFAMEHHLV 223


>gi|302530377|ref|ZP_07282719.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302439272|gb|EFL11088.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 217

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 11/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +S    +  + E   G S   + R        LD  +    P 
Sbjct: 4   LMFADDEELVRSGLRAMMSGASDIEIVGEASDGRSAVEVARRYHPDVALLDIKM--RAPD 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +R +           +          F              N +     D A +   +
Sbjct: 62  DGIRALRAILALPDPPTVA-----MLTTFDIDEYVSLALRLGANGFLLKDIDPAALLRAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   G ++          +     +  ++          L+ RE E +  I +G ++ 
Sbjct: 117 RDLAKGGAVLDPGVAVR---MVQSHRDEQRAAQPARKLLASLSEREREVVALIGQGLSNA 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   L +S  TV  Y+++++ K     R  A   A R  ++
Sbjct: 174 EIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGLL 215


>gi|184200360|ref|YP_001854567.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183580590|dbj|BAG29061.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 203

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 67/223 (30%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + +   GA    L          LD  +     
Sbjct: 5   RVLIADDQALVRAGLAALLDLEPDITVVAQAADGAEAVALAGELPVDVALLDIEMPGLTG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +  + +            L    F              + +       A +   
Sbjct: 65  LEATERIVAAGRGTRC--------LMVTTFDRPGYLRRAFDAGASGFVVKDTPAAELAEA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++    L E  LLA                   LT RE + L   S G ++
Sbjct: 117 IRKVHAGLRVVDP-ALAEKSLLAG---------------PNPLTPREQDVLREASHGASA 160

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I   L +S  TV N+++S + KT T  R+ A A A RN  +
Sbjct: 161 GQIGRALHLSAGTVRNHLSSAIGKTGTANRTEAAAVAARNGWL 203


>gi|56476749|ref|YP_158338.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312792|emb|CAI07437.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 206

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 19/216 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S    +    E   G     L+R   F    LD  +     
Sbjct: 3   EILVADDHPIVREGLKTVISMAPDIAVTGEAANGGEVLALIRRKKFDVLLLDMSMPGHDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL++ +   +             L   +        +        Y +   DV  +   
Sbjct: 63  VDLIKRVRAEQ--------PLLPILVLTMHGEAQLAASALKLGVAGYLTKGKDVESLTNA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I  D   +I   A + A          G    L+ RE++ L  +  GKT 
Sbjct: 115 IRKVAAGQPCIDPDLAEKIIFNARFFA----------GPQEPLSEREIQVLRMLQLGKTV 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+V L +S  TV+ +   +MRK      +  I Y
Sbjct: 165 TEISVELSLSPKTVSTHKVHLMRKLGIANNADLIRY 200


>gi|295698853|ref|YP_003606746.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438066|gb|ADG17235.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 220

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 65/243 (26%), Gaps = 32/243 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                ++++L  +          L   +D +              R  AL          
Sbjct: 1   MSADTISVLLVDDHAVVREGYRRLLELNDDVEVCGEAADAAQAYQRFCAL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      + +R M   E D           L   V          
Sbjct: 51  -----RPDVVVMDVSLPGASGIEAMRRMLAREPD--------ARVLIFSVHEESIFVRRA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y +       +   +  +  +   +  D    + L         ++       
Sbjct: 98  LDAGALGYVTKASAPDVLVEAVRSIARRAGYLSPDISQALAL---------RTAFNEGPP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE E L  + +G T   IA  LG+S+ TV N+ + I +K            A R
Sbjct: 149 GRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASR 208

Query: 243 NNI 245
             +
Sbjct: 209 LGL 211


>gi|163740011|ref|ZP_02147416.1| two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
 gi|163743180|ref|ZP_02150562.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161383597|gb|EDQ07984.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161386756|gb|EDQ11120.1| two component transcriptional regulator, LuxR family protein
           [Phaeobacter gallaeciensis BS107]
          Length = 204

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +S         A    +  T+     +  + E             
Sbjct: 1   MRILLADDHDMVRETISAYLKSEGGAA----VTSTIDLPGALSEIEE-----------NG 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +        +     +   K   ++                         
Sbjct: 46  PYDLVLLDYNMPGMQGLAGLGTALKANGGKGVAIISGSAPSRT--------AQEALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +  + + +     A+                 L+
Sbjct: 98  IGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMRKEAEAPAHPLADK------------LS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +  G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 146 PREIEVLNGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLEAKNRTQAALTAKEAGL 203


>gi|21222228|ref|NP_628007.1| two-component system response transcriptional regulator
           [Streptomyces coelicolor A3(2)]
 gi|5457253|emb|CAB46941.1| putative two-component system response transcriptional regulator
           [Streptomyces coelicolor A3(2)]
          Length = 218

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 31/241 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +    +  +           R+ A            
Sbjct: 3   EDGKIRVFLLDDHEVVRRGVHDLLSGEADIEVVGEAGTAAEAQARVTAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   ++            L    F          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCRDIRSRDESVRC--------LMLTSFADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-K 182
               + Y       A +   +  +     ++                   +        +
Sbjct: 100 MAGASGYVLKDIRGAELLGAVREVAAGKSLLDPAATAR-------VLERLRGGGARPDDR 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 153 LARLTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAAFVAR 212

Query: 243 N 243
            
Sbjct: 213 L 213


>gi|33597314|ref|NP_884957.1| response regulatory protein [Bordetella parapertussis 12822]
 gi|33573741|emb|CAE38039.1| response regulatory protein [Bordetella parapertussis]
          Length = 224

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +D      V  +      ++ +            +                  
Sbjct: 13  LRIAIVEDDPAFRHAVVAVIAHEPGMSVLAQAQTCAQARAMLQ---------------GP 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D++R           +++         +F      +       
Sbjct: 58  PADVLLVDLGLPDGSGIDVIR--QARRLWDDCDIM------VNTMFGDEAHVMRSIEAGA 109

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFE 185
             Y     + A I   +  L   G  I         L+A    +  +             
Sbjct: 110 CGYLLKDSEPAGIVRDIRALRDGGSPINP-------LIARQLLDRLRQGLPAAAPPAAMA 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE + L  I+ G T DEIA  L +SR+TV  ++  I RK    ++  AI  A 
Sbjct: 163 LSPREHQVLERITLGYTYDEIARDLEVSRHTVQTFVRRIYRKLQVHSKVDAINAAR 218


>gi|189424624|ref|YP_001951801.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420883|gb|ACD95281.1| two component transcriptional regulator, LuxR family [Geobacter
           lovleyi SZ]
          Length = 214

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 18/220 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ---------KLDSIVSSDWPFD 85
           R++ +D        + ++   +     LL   +    +         + D +V      +
Sbjct: 3   RLLLVDDHAMVRKGLVSILSVLQEDGMLLSCDEAGSGEDALGLLKQYRYDLVVLDIAMPE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L     LS   + +  L        P        +       + Y +       + + + 
Sbjct: 63  LGGLELLSIIHENWPTLPVLMLSMFP---EEQFALRSLKLGASGYLTKKEAADELLLAVG 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L    R + +     +            S D        L+ RE + L  ++ GK+   
Sbjct: 120 QLLKGKRYLSQSLSTSL------INQALASGDNSRPSHATLSNREFQILRSLATGKSLKA 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA+ L +S  TV+ Y A +  K         IAYA  + +
Sbjct: 174 IALDLELSIKTVSTYKARLFAKLGFHNDVDLIAYANNHQL 213


>gi|319441256|ref|ZP_07990412.1| two-component system transcriptional regulatory protein
           [Corynebacterium variabile DSM 44702]
          Length = 205

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 61/227 (26%), Gaps = 22/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S    +    D       L   +     +  + E    +  +           +D  ++
Sbjct: 1   MSGPVRVMLVDDHPVVRAGLRAILDSFGDIAVVAEGADGAAAVDADATTVDVIVMDIQMA 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                   + +  +              L    + +  + +   A     Y         
Sbjct: 61  GMDGITATKALVAAGGPP---------VLILTTYGSEADIVESLAAGARGYLLKDAPETD 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +M           +    +                    D  L+ RE E L  ++ 
Sbjct: 112 LHRAVMSTARGDPTFSPEVGAALA-------------RRVGRPDLALSRRETEILRALAT 158

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ E+A  L IS  TV  ++  I RK     R+ A+  A    ++
Sbjct: 159 GASNREVASSLFISPATVKTHLIHIYRKLGVDNRTAAVTEAQVRKLI 205


>gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
          Length = 198

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  ++                   GA    +++ +
Sbjct: 1   MKLLVAEDQSMLRDALCQLLLMEDDVDEILQAGD---------------GAQAIGILQVE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +            +    +    F  +           
Sbjct: 46  NVDVAILDVEMPKKSGLDVLEWIRK---------HKEMKVIIVTTFKRVGYFERAVKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       + +   +  +    +    + +                 +    +D  L+
Sbjct: 97  DAYVLKDRSTSELMTTIHTVLAGKKEYSPELM-----------------ETMMTQDNPLS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  IS GKT+ EIA  L +S  TV NYI+SI+ K +   R  A   A  +  V
Sbjct: 140 QQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIAEEHGWV 198


>gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 210

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +      LT   G     ++  D+      D ++     
Sbjct: 5   KRLLLIDDDPNLILLVRDYLGFRGY-DVLTAENGQRALGILEQDIPDMIICDVMMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V  +  +E+  +  VL    +          + +       + Y    F+   +   
Sbjct: 64  YTFVEQVRQNERTSWVPVLFLSAKGQSA------DRVKGLNKGADVYMVKPFEPEELVAQ 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +     +  +    R  E         +           D +LT  E++ + +++ G  +
Sbjct: 118 V-----ESSLKQTSRWKEHQTKVGEPGSRI-----QVPFDVQLTPTELKVVQFVARGLAN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S+ TV +++++++ KT    R+    +A+ N
Sbjct: 168 REIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 207


>gi|296131053|ref|YP_003638303.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022868|gb|ADG76104.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 218

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 67/225 (29%), Gaps = 10/225 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            T     +    D  A    L   +  + R+  + E   G       R        +D  
Sbjct: 1   MTPDRVRVLLADDHAAIRAGLRLLLEQSGRVEVVGEASDGDVALRQARALRPDVVLMDVR 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +            +    +    F      +         +   T   
Sbjct: 61  MPGTDGIAATAAIVGE---------RLAEVVALTTFDLDEYVLGMVRAGAAGFLLKTAGA 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++  +    +    A Q     +  V   +   LT RE + LT +
Sbjct: 112 RELVDAVCRVAAGEGVLAPEVTRRLLDAVAAQPAEPPAPVVVDARLANLTARERDVLTAL 171

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +G ++ EIA  L +S  TV ++++ ++ K   +TR  A   A  
Sbjct: 172 GDGLSNAEIAARLVVSETTVKSHVSHVLAKLGVRTRLQAGVLARE 216


>gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 201

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 68/218 (31%), Gaps = 20/218 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVSSDWPFDLV 87
             D  A    L   +S T  +  + E    +  +            +D  +      +  
Sbjct: 2   ADDQAAVRDGLVALLSVTAGVEVVGEAANGAAAVAAAETLRPDVVLMDLRMPGVDGVEAT 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +A S  D           +           +         Y +     A I   +   
Sbjct: 62  RRIAQSAPD--------VRVVVLTTHADDASILKALRAGATGYLTKESGRAEIARAIEAA 113

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++       +   A                  +LT RE E LT I+ GK++ EIA
Sbjct: 114 ASGQSVLDDGVTAILLAAAVEV-----------PASADLTPREAEVLTLIARGKSNTEIA 162

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S  TV  +I ++  K   + R+ A+ YA+R  +
Sbjct: 163 GELFVSAATVKTHINNLFAKIGVRDRAQAVRYALRRGL 200


>gi|172039771|ref|YP_001799485.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171851075|emb|CAQ04051.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 248

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 65/267 (24%), Gaps = 47/267 (17%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + L  +     + V            +                   VG +  +  
Sbjct: 1   MTDIRVFLVDDHSMFRAGVR---------TELTGATTAAG------ETITIVGEAETVPQ 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 E     ++      D      L             +    P      + IT   
Sbjct: 46  AITKIHETSPAVVLLDVHMPDGGGLEVLLNTLDTDARFLVLSVSDSP-----EDVITLIR 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-------------- 170
                Y +       +   +  +     +        +    +  A              
Sbjct: 101 AGARGYVTKNTSGPELVSFISRVHSGDAVFSPRLAGYVLDAFSSVAPSPEVQAPSQDLGR 160

Query: 171 -------------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                            S   +     ELT RE E L  ++ G T  E+A  L IS  TV
Sbjct: 161 QRGGVLKDGAESTESAGSAGGNQPNLDELTPREHEVLRLLARGYTYKEMAERLFISVKTV 220

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNN 244
             ++++I+RKT    R     +  R N
Sbjct: 221 ETHVSNILRKTQQTNRRSLSRWMERRN 247


>gi|159901160|ref|YP_001547407.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894199|gb|ABX07279.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 219

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 69/234 (29%), Gaps = 26/234 (11%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + +  ++     +     +       G    ++ +        LD  
Sbjct: 1   MRILIVDDHPVFREGVRALLETHDEMEVVGVLG-----HGRDAAVVAKDQFVDVALLDVS 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     +++ R +  +          R   L      T        A     Y   T D 
Sbjct: 56  LPDMPGYEVCRSIVEAS--------PRTRVLMLTANDTNDVIRQSLAAGAAGYVLKTEDP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW------GKDFELTGREV 191
           +R+   +  +     ++        G +A                         LT RE 
Sbjct: 108 SRLISHISAVAQGETVLA-------GPIAQKVVRQLLEGPQPTVSTKTNDALNALTERER 160

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +     +EG+ + +IA  L +S  T+  ++ +I  K     ++    +AV+  +
Sbjct: 161 QVFFLAAEGRRNSDIAQQLILSEETIKTHLRNIYSKLGLGNKAELRLFAVQARL 214


>gi|238028878|ref|YP_002913109.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237878072|gb|ACR30405.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 217

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 72/240 (30%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +       +  L     +   +   +                GA        
Sbjct: 2   ELTLLLVDDHAIVRQGIGQLLIDRRVAREVAEAES---------------GAEALAAADK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    LD  +      +L++ +           +          +      +      
Sbjct: 47  GSFDVILLDISLPDINGVELLKRLKRKL-----PTVPVLMFSM---YREDQYAVRALKAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y S   +  ++   +  +    + +       +          + S++       +L
Sbjct: 99  ASGYLSKAVNATQMISAIQQVVAGRKYVSPALAEALA--------EYVSFENEPMPHEKL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + L  ++ GK   +IA+ L +S  TV+ Y   ++ K      +    YA+ N ++
Sbjct: 151 SDREYQTLCMLASGKRLTDIALTLSLSVKTVSVYRTRLLEKMKLSNNAELTFYAMSNRLL 210


>gi|77463659|ref|YP_353163.1| two component transcriptional regulator, LuxR [Rhodobacter
           sphaeroides 2.4.1]
 gi|221639502|ref|YP_002525764.1| LuxR family two component transcriptional regulator [Rhodobacter
           sphaeroides KD131]
 gi|332558515|ref|ZP_08412837.1| Two component transcriptional regulator, LuxR family protein
           [Rhodobacter sphaeroides WS8N]
 gi|77388077|gb|ABA79262.1| two component transcriptional regulator, LuxR [Rhodobacter
           sphaeroides 2.4.1]
 gi|221160283|gb|ACM01263.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
 gi|332276227|gb|EGJ21542.1| Two component transcriptional regulator, LuxR family protein
           [Rhodobacter sphaeroides WS8N]
          Length = 210

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 73/246 (29%), Gaps = 36/246 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    Q++++++  + E      S   T S  +     +    S    +  + E      
Sbjct: 1   MTQTPQKLSVLIADDHEMVVEMFSLFLTASSEM----TVKTAKSLDEALERIKE------ 50

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                   F    LD  +        +         K    +   T    P         
Sbjct: 51  -----HGPFDVTLLDLNMPGMNGVAGLVRAIKLSAGKP---VAILTSNPTPR-----MVD 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   +     T  V  +   +  +      +  +   +                   
Sbjct: 98  EILATGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARD-------------RRQAPD 144

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT +E+  +++++EG+ + EIA  L ++  T+  ++ SI +K     R+ A+  A
Sbjct: 145 SSGGRLTEKEMLVMSYLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTA 204

Query: 241 VRNNIV 246
               I+
Sbjct: 205 RNLGII 210


>gi|300088572|ref|YP_003759094.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528305|gb|ADJ26773.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 220

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 68/221 (30%), Gaps = 9/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     +  + E  G    +    +      +D ++      
Sbjct: 5   RVFIVDDNFVARRGLRSYLELEQDILVVGEAAGGRDAVEWVKNNP----VDIVLMDVHMP 60

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT-FDVARIRIG 143
                 A +   K    ++        V       +       + Y     F    +   
Sbjct: 61  GFDGIKAAAGILKIRPGIKALM---LTVVEDQTTILRALLAGASGYLIYGQFAPEDMVGA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +       +          F++       +  LT RE+E LT I+ GK +
Sbjct: 118 IRAVASGDTSVTPQIDRSLLEQIQQSDQQFQNIAEMESAE-PLTAREIEILTLIAAGKGN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L I   TV N+I  I  K   K+R  AI+Y +R N
Sbjct: 177 REIAETLFIEEKTVKNHINVIYSKLRIKSRYEAISYMLRQN 217


>gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 237

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 17/223 (7%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D+ AR+  +   ++       +     A    L+    +    +   +       L+R +
Sbjct: 24  DVAARLRRILGNLAPGR--RVVVASTRAEACNLLASLPYDLLLVGMCLPGSDGVSLIRHV 81

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
             +         +    +               +     Y     D A +   L  +   
Sbjct: 82  RET--------YRHIETIAMSPCDDHELVNAAISAGAIGYLLTEADDAELSFLLRSIERG 133

Query: 151 GRIILRDRLWE-IGLLAAYQANMFKS------YDVHWGKDFELTGREVECLTWISEGKTS 203
           G  +        +GL+AA                        L+ RE++ L  I++G ++
Sbjct: 134 GAPMDSRVARRILGLIAASAKTRTIEPIRTVPLAEPPSAPARLSPRELKVLRLIAQGWSN 193

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  + +S NT+  +  SI RK A K+R+ A+  A+++ ++
Sbjct: 194 RQIAEAVYLSVNTIEFHAKSIYRKLAVKSRTQAVHEAMQHGLL 236


>gi|302340566|ref|YP_003805772.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637751|gb|ADK83178.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 214

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E     +  L         +      +             G      V   
Sbjct: 2   IRILIADDQELFAESLKTL---------LTTYTDDIEIVGIAEN-----GRKAISWVENT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  S         +    +    F  +           
Sbjct: 48  TIDIILMDVKMPELDGVEATKIILQSH--------KSIKVVMLSTFKEIDFVKRALRYGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +   +     I          +   +     +         +LT
Sbjct: 100 LGYLLKDISPTELIASIRAAYNGATQISPAIAAN---IVESKYTDKDNNGTSIEWYKDLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E    IS G  + EIA  L I+  TV NY++SI+ K   K R   I  A R 
Sbjct: 157 KREKEIFKLISRGYDNTEIADELCIAYQTVRNYVSSIISKLGIKNRYEIIKLANRM 212


>gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 201

 Score =  104 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + +   + ++ +    D L  +           ++  L               
Sbjct: 2   IKLYLAEDQQLLNTALAGILELEDDLTMIGTATNGQIALEQIATL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +   +         +   +    F          +   
Sbjct: 47  QPDVALLDIEMPGLTGLEIARRLHEQQ--------PQVKVIILTTFAQTSYFKQAISAEV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         + + +  +     +   + +  +                       L+
Sbjct: 99  AGYLLKDGPSDDLIVAIHSVMAGKTVYAPELVVGLT----------------NQPQNPLS 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ E+A  L +S  TV NY+++I+ K A   R  AI  A  N  +
Sbjct: 143 QRETDVLQAVANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIARHNGWL 201


>gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 185

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 54/184 (29%), Gaps = 11/184 (5%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            Q   LD  V           +A S       V    +    P      +          
Sbjct: 7   PQVVLLDVHVPGGEGGGGAEILAKSRPYSPTTVFLALSVSDAP-----QDVGAVIRAGAQ 61

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV------HWGK 182
            Y + T   A +   +  +     +        +                      H  +
Sbjct: 62  GYVTKTITGADLISSIKQVHEGYAVFSPKLAGFVLSAFQGVPAAGSDGGADGAARAHDEE 121

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +  I+ G T  E+A  L IS  TV  +++S++RK     R+    +A  
Sbjct: 122 LDRLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWAAD 181

Query: 243 NNIV 246
             IV
Sbjct: 182 RRIV 185


>gi|126462491|ref|YP_001043605.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104155|gb|ABN76833.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 240

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 73/246 (29%), Gaps = 36/246 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    Q++++++  + E      S   T S  +     +    S    +  + E      
Sbjct: 31  MTQTPQKLSVLIADDHEMVVEMFSLFLTASSEM----TVKTAKSLDEALERIKE------ 80

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                   F    LD  +        +         K    +   T    P         
Sbjct: 81  -----HGPFDVTLLDLNMPGMNGVAGLVRAIKLSAGKP---VAILTSNPTPR-----MVD 127

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   +     T  V  +   +  +      +  +   +                   
Sbjct: 128 EILATGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARD-------------RRQAPD 174

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT +E+  +++++EG+ + EIA  L ++  T+  ++ SI +K     R+ A+  A
Sbjct: 175 SSGGRLTEKEMLVMSYLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTA 234

Query: 241 VRNNIV 246
               I+
Sbjct: 235 RNLGII 240


>gi|325661231|ref|ZP_08149858.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472738|gb|EGC75949.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 208

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 72/217 (33%), Gaps = 17/217 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK------LDSIVSSDWPFDL 86
           + R++ +D     T  +  + E  G      +  D     +       D ++       L
Sbjct: 1   MIRLLIVDDDYLITTALKTILEAEGDLSVCGIGKDGNDAVRLYKQLQPDLLLMDIRMEHL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A  +  + Y   +         F      I         Y     D   I   +  
Sbjct: 61  DGLNAAEQILQIYPDARILL---LTTFSDDEYIIKALHLGARGYILK-QDYTGISPAIRA 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +   +    I  L       F+       + ++LT RE   +  +++G+++ EI
Sbjct: 117 VLKGQTVFGAEITTRIPKL-------FEPQKAFDYETYQLTSREFSIIELVADGRSNREI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           A  L +   TV NY++SI+ K   + R+    +  ++
Sbjct: 170 AEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQH 206


>gi|238784689|ref|ZP_04628693.1| Response regulator uvrY [Yersinia bercovieri ATCC 43970]
 gi|238714368|gb|EEQ06376.1| Response regulator uvrY [Yersinia bercovieri ATCC 43970]
          Length = 206

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 57/192 (29%), Gaps = 18/192 (9%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G       R  +     +D  +      +  R +     D           +   +  
Sbjct: 22  QCGEDAVKWCRSHVVDIVLMDMNMPGIGGLEATRKILRYSPD--------TKVIMLTIHT 73

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y S       +   +  +    R I  D   ++ L          
Sbjct: 74  ENPLPAKVMQAGAGGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMAL---------S 124

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
             +      F  L+ RE++ +  I++G+  +EI+  L +S  TVN+Y   +  K      
Sbjct: 125 QLEPPAETPFSCLSERELQIMLMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGD 184

Query: 234 SGAIAYAVRNNI 245
                 A+R+ +
Sbjct: 185 VELTHLAIRHGL 196


>gi|28869333|ref|NP_791952.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28852574|gb|AAO55647.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330878542|gb|EGH12691.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|331019215|gb|EGH99271.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 222

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQAL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPGLKVVIFTMDDSTDHLEAAISAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIDGLQRVARGEEALNSAVSARL------LRRMTERNTSGASVPEALT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|318077906|ref|ZP_07985238.1| LuxR family two-component response regulator [Streptomyces sp.
           SA3_actF]
          Length = 238

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 19/238 (7%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + L  + E     +  L      +  +           R+ A               
Sbjct: 9   PVRVFLLDDHEVVRRGLRDLLEAEPDIVVVGEAANAREALARVPAT-------------- 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + S    D        E       L          F             
Sbjct: 55  -RPDVAVLDVRLGSATGGDHEGVEVCRELRAELPELACLM---LTSFDDDEALFDAIMAG 110

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
              Y     + + +   +  +     ++        +  +   +           G+   
Sbjct: 111 AAGYVLKQINGSDLLNAVRTVATGTSLLDPRMTSRVMARIREPEREKPAPSRALPGELDR 170

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E L  I  G T+ +IA  L ++  TV N ++SI+ K     R  A   A R 
Sbjct: 171 LSPRELEILDLIGLGLTNRQIAERLYLAEKTVKNRVSSILGKLGVGRRIQAAMIAERL 228


>gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 33/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +VL  +     S +  L      +  +       +    +  L              
Sbjct: 6   PLTVVLADDHVVVRSGLRLLLESEPAIEVVAEAGDVTAAVDAVARL-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +  +     +  +  S          +   +                  
Sbjct: 52  -RPDVLVLDLHMPGEPSLPAIPRLRASS--------PQTRVVVLTAQRDPSYAGEALRLG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +   G  +                 +  +     G   EL
Sbjct: 103 ATGYVPKEAAGGHLLEAIAAVMAGGTYLEPQLGAR----------LAATAAAAAGAAPEL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I+ G T+ EIA  L +S  TV ++ A I RK     RS  + YA+   +V
Sbjct: 153 TARELEVLRLIARGLTNREIAERLFLSVRTVESHRARIQRKLGRSRRSDLVDYALERGLV 212


>gi|284043113|ref|YP_003393453.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283947334|gb|ADB50078.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 227

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  +++  + +   + V       + +  +           ++  L              
Sbjct: 8   RARVLIVDDHQLFRAGVQAEL--GERVTVVGDAAGVEEAVEQIERLA------------- 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +++R                   L   V     + I      
Sbjct: 53  --PDVVLLDVHMPGGGGVEVIRR--------AAPGRPGVRFLALSVSDAPDDVIAVIRAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y + T     +   +  +     +     L    L A        +      +  +L
Sbjct: 103 ARGYVTKTISADELVDAIERVADGDAVFSPR-LAGFVLDAFAGGAPAPAVATADAELDQL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I+ G    E+A+ LGIS  TV  ++++++RK     R     +AV   ++
Sbjct: 162 TQREREVLRHIARGYLYKEVALRLGISAKTVEAHVSAVLRKLQLSNRHELSRWAVERRLL 221


>gi|255326927|ref|ZP_05368003.1| two component transcriptional regulator, LuxR family [Rothia
           mucilaginosa ATCC 25296]
 gi|255296144|gb|EET75485.1| two component transcriptional regulator, LuxR family [Rothia
           mucilaginosa ATCC 25296]
          Length = 210

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 22/230 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + LA ++ L+  +    ++ +  E +GA     V         LD  
Sbjct: 2   IRVLLADDQQLIREALAALLGLEVDLQIVGQVGSGDEVLGA-----VALLKPDVVLLDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDK-YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +      D +   A            +    L    F              + +      
Sbjct: 57  MPGTLLADGIEAAAALRDAGAVSESGEPVRTLIVTTFGRPGYVRRALEAGASGFVVKDTG 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  +    R++                      D        LT RE + L  
Sbjct: 117 ARQLAEAIRRVHAGLRVVDPSLAA----------------DSLVTGASPLTEREAQVLRE 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G T+ +IA  L +S  TV NY+++ M KT   TR  A+  A  N  +
Sbjct: 161 AASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 210


>gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 212

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 20/220 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D    ++ +   + +      +T   G     ++     Q+Q  D I+      +
Sbjct: 12  LLLIDDDPNLILLVKDYLEFRGY-EVITAENGREALDILE----QQQIPDMIICDVMMPE 66

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +   A  EK +          LF        + I       + Y    F+   +   + 
Sbjct: 67  -MDGYAFVEKLRDDARTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVE 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +                           +      ELT  E++ +  +++G  + +
Sbjct: 126 ACLSRVVPPSLSTT--------------SGPTIQVPSHVELTPTELKVIQLVAQGMANRD 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +S+ T+ +++++++ KT    R+    +A+ + +
Sbjct: 172 IADKLNVSQRTIESHVSNMLNKTNLHNRTELARWAIESKM 211


>gi|300933089|ref|ZP_07148345.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 212

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 69/236 (29%), Gaps = 24/236 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L  +     + +  +   +  +  +   D   +    + A          L    +   
Sbjct: 1   MLADDHPVIRAGLEAMLGSAADIDVIATADTPDAAIEYVRAS---------LAGDEEPVD 51

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D   S          +  +   +      +        + T  E +   +     Y
Sbjct: 52  VVLMDLRFSQQVGAGEAGGVYATRAIRALPRAPQVLV--VTNYSTDGEVVGAVSAGAVGY 109

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +  G+        ++    + ++              D        LT RE
Sbjct: 110 LLKDCPPTELTDGIRKAARGESVMSSQVMGKL-------------MDSMNRPMETLTARE 156

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ L     G+++ +IA  L ++  T+ +++  +  K     R+ A+A A    I+
Sbjct: 157 IDVLRLAGLGRSNRQIAKELVLTEATIKSHMGRVFTKLGVSNRTAAVAVARERGIL 212


>gi|289425149|ref|ZP_06426926.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289426574|ref|ZP_06428314.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295130635|ref|YP_003581298.1| putative Hemoglobin-dependent two component system response
           regulator HrrA [Propionibacterium acnes SK137]
 gi|289154127|gb|EFD02815.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289160218|gb|EFD08382.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377220|gb|ADE01075.1| putative Hemoglobin-dependent two component system response
           regulator HrrA [Propionibacterium acnes SK137]
 gi|313764411|gb|EFS35775.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772207|gb|EFS38173.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792097|gb|EFS40198.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801951|gb|EFS43185.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313807563|gb|EFS46050.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810072|gb|EFS47793.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313812898|gb|EFS50612.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815948|gb|EFS53662.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818604|gb|EFS56318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313825246|gb|EFS62960.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313827534|gb|EFS65248.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313830402|gb|EFS68116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313833772|gb|EFS71486.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313838777|gb|EFS76491.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915403|gb|EFS79234.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918316|gb|EFS82147.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920126|gb|EFS83957.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314931648|gb|EFS95479.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955704|gb|EFT00106.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958103|gb|EFT02206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314959957|gb|EFT04059.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314962754|gb|EFT06854.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314967878|gb|EFT11977.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314973404|gb|EFT17500.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314976083|gb|EFT20178.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314978528|gb|EFT22622.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314983897|gb|EFT27989.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988079|gb|EFT32170.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989886|gb|EFT33977.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315077971|gb|EFT50022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080596|gb|EFT52572.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315084266|gb|EFT56242.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315085610|gb|EFT57586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315088338|gb|EFT60314.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095949|gb|EFT67925.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098580|gb|EFT70556.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101419|gb|EFT73395.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315108635|gb|EFT80611.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326231|gb|EGE68021.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL096PA2]
 gi|327331894|gb|EGE73631.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL096PA3]
 gi|327443096|gb|EGE89750.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327445878|gb|EGE92532.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448140|gb|EGE94794.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327450738|gb|EGE97392.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327453185|gb|EGE99839.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327453920|gb|EGF00575.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328753426|gb|EGF67042.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328754157|gb|EGF67773.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328754593|gb|EGF68209.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328760809|gb|EGF74375.1| DNA-binding response regulator VraR [Propionibacterium acnes
           HL099PA1]
 gi|332675478|gb|AEE72294.1| nitrate/nitrite response regulator protein NarP [Propionibacterium
           acnes 266]
          Length = 210

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +     + V+ L      +  +              A  +       L    D
Sbjct: 3   VRVLIADDHPVVRAGVTALLDTDPDIEIVATAATPSEAL-AATATVDLDLVLLDLQFSSD 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D         +    + L+                     T  + +       
Sbjct: 62  ADAPSGVDVTRKIRSQPNAPEVLILTNY------------------DTDADILAAVEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +                       LT
Sbjct: 104 TGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRL-------------MARMRSPRTSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   ++G ++ +IA  L +S  TV  +++ I  K    +RS A+A A     +
Sbjct: 151 ARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|323965314|gb|EGB60772.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
          Length = 209

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 71/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +     +         +  +      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSCAAQAW-----SALTHNDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +             +   ++       +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQKPQF--------RAIILSIYDAPTFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVGLGGHYLCADAIRAL-----------RGGGQPAQALEILTPREREVFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 158 VKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 198

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  ++                   GA    +++ +
Sbjct: 1   MKLLVAEDQSMLRDALCQLLLMEDDVDEILQAGD---------------GAQAIGILQME 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +            +    +    F  +           
Sbjct: 46  NVDVAILDVEMPKKSGLDVLEWIRK---------HKEMKVIIVTTFKRVGYFERAVKAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       + +   +  +    +    + +                 +    +D  L+
Sbjct: 97  DAYVLKDRSTSELMTTIHTVLAGKKEYSPELM-----------------ETMMTQDNPLS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  IS GKT+ EIA  L +S  TV NYI+SI+ K +   R  A   A  +  V
Sbjct: 140 QQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIAEEHGWV 198


>gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
 gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513]
          Length = 259

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 65/232 (28%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  + +        +       D  V    P   V   +      
Sbjct: 21  QSDTLALLTRIRDEIGCRYVMHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 80

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 81  IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 138

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 139 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 198

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 199 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|71737969|ref|YP_274134.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257484378|ref|ZP_05638419.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627275|ref|ZP_06460229.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289650435|ref|ZP_06481778.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298486449|ref|ZP_07004509.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71558522|gb|AAZ37733.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298158926|gb|EFH99986.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320324828|gb|EFW80900.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329194|gb|EFW85191.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869470|gb|EGH04179.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330989303|gb|EGH87406.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331013208|gb|EGH93264.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 222

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPDLKVVIFTMDDSTDHLEAAISAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIAGLQRVARGEEALNSTVSARL------LRRMTERNTSGAALPESLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 209

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 29/233 (12%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R+              S  LA+++ L+  +         T   G + +L +        
Sbjct: 5   GRDKMITLYLAEDQSMLSSALAQLLNLEDDLKVLG-----TSGDGQTAWLDINRLKPDIA 59

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +      D+   +  +              +    F              + Y  
Sbjct: 60  ILDIEMPKATGLDVADDILAAHL--------ATKVIILTTFAQKAYFARAVKAKVSGYLL 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +  +     I   + +  +   A                D  L+ +E+ 
Sbjct: 112 KDSPSDDLVTAIRNVMAGQTIYDPELVRNMVNAA----------------DNPLSDQEMV 155

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L   ++G T+ EIA  L +S  TV NY+++I  K     R  A+  A  N  
Sbjct: 156 VLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKNNKW 208


>gi|256374257|ref|YP_003097917.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255918560|gb|ACU34071.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 17/221 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E  G     +  +        +D  +     
Sbjct: 4   RVLLVDDHEVVRRGLRELLEDEADLKVVAEAGGVREAVVRAQASKPDVAVVDMRLPDGTG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L   +          VL          F      +       + Y         +   
Sbjct: 64  VELCGKLQDLPGGPRCLVL--------TAFEDDEALVGAITAGASGYLLKQVRGQDLVHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++            +      +       +   LT +E   L+ I EG ++
Sbjct: 116 VREVAAGRSLLDPVTT-------SRVLERMRK-PQEPDELATLTEQERRVLSLIGEGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +IA  L ++  TV N++ +++ K   + R+ A A+  R  
Sbjct: 168 RQIAERLFVAEKTVKNHVTAVLSKLGMERRTQAAAWVARRG 208


>gi|254477132|ref|ZP_05090518.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
 gi|214031375|gb|EEB72210.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
          Length = 204

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 63/238 (26%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +S              +   V     +  + +             
Sbjct: 1   MRILLADDHDMVRETISAYLQSEGG----ATVTSAVDLPGALGEIAD-----------NG 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +        +     +   K   +L                         
Sbjct: 46  PYDLVLLDYNMPGMNGLAGLGTALEANGGKGVAILSGSAPART--------AKEALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +  + + +     ++                 L+
Sbjct: 98  IGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMRKEAEAPSHPLADK------------LS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +  G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 146 PREIEVLDGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNRTQAALTAKEAGL 203


>gi|21222669|ref|NP_628448.1| response regulatory protein [Streptomyces coelicolor A3(2)]
 gi|8248775|emb|CAB93036.1| putative respose regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 223

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 66/238 (27%), Gaps = 19/238 (7%)

Query: 12  LNREDEQRTSFVS-HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLF 69
           +     +R +     +    D +     L   +     +  + E   G     L      
Sbjct: 1   MTDPAARRPASAPVRILVCDDHVVVRAGLLALLDSAPGIEVVGEAGTGEEALALAARLTP 60

Query: 70  QEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
               +D  + +     +  R +  +   +               + T  +          
Sbjct: 61  DVVLMDLQLGAGIDGVETTRRLTAATGAEPARTPHVL---VLTTYDTDADITRAIEAGAT 117

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +         +        G +A       +           LT 
Sbjct: 118 GYLLKAERPEELFAAIHAAAQGRTALS-------GPVAGRVMANLRKPRPA------LTD 164

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  ++ G  + EIA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 165 RERDILAQLATGLGNREIARALFISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLL 222


>gi|124266879|ref|YP_001020883.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124259654|gb|ABM94648.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 240

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 77/258 (29%), Gaps = 37/258 (14%)

Query: 1   MNFEIQ-QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
           MN E Q  + +V+  +       +  L         +            +  +       
Sbjct: 1   MNSERQLPIRVVVVDDHTLFRRGLVTLLAADGRFEVVAEAGDAGEAQGVVERM------- 53

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                         LD+ +      D +  +  +              L   +     + 
Sbjct: 54  --------RPDVLLLDNHLPGVSGVDALPALLSAAPGM--------RVLMLTMSEDHADI 97

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------ 173
           +   +     Y   T ++  +   ++        +      ++   A   A M       
Sbjct: 98  VAALSRGAAGYLLKTAEIDELGDAIVSAISGSASLSAPVALKLAAGAIATAQMAVSATEV 157

Query: 174 -------KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                  +   V      +L+ RE E L  ++EG ++  IA  LGI+  TV  ++ +++R
Sbjct: 158 HATPPSARDRAVPADPLAQLSARERETLALVAEGCSNKLIARQLGIAEATVKIHVQNLLR 217

Query: 227 KTATKTRSGAIAYAVRNN 244
           K   ++R  A A+  R  
Sbjct: 218 KLGLESRVHAAAWYARLG 235


>gi|228990002|ref|ZP_04149975.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
 gi|228769668|gb|EEM18258.1| Two component transcriptional regulator, LuxR [Bacillus
           pseudomycoides DSM 12442]
          Length = 201

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 16/202 (7%)

Query: 46  TMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              +  + E   G     L          LD  +       ++  + L          ++
Sbjct: 12  RPSLKVVGEASDGLEALRLYDILRPDILILDISLPRLDGIQVLTEIKLR--------YEQ 63

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +   +               + Y         +   +  +      +    +  +  
Sbjct: 64  AKVIVLTMHEDEDYVTLIMNAGASGYVPKAAVDEELYTAIDSVMDGYLYLRPKEISTM-- 121

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                    ++          L+ RE E L ++ +G +  EIA  L IS  TV+ +   +
Sbjct: 122 -----LKRLQNETESRNPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRM 176

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     +S  + YA++ N++
Sbjct: 177 LNKLNLSKKSELVQYAIKYNLI 198


>gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC
           11170]
          Length = 239

 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 65/228 (28%), Gaps = 27/228 (11%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCMALSEKDKYYN 100
                     +G +  L     + +      I  +     + P D+          +   
Sbjct: 12  LDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILETRNLPVDMAEIWCKQGYYQIDP 71

Query: 101 VLQRPTELFCPVFHTLPENIT------------------PPAGMDNRYCSLTFDVARIRI 142
           V      +  P   +   + +                     G+                
Sbjct: 72  VQDAALLVSAPFVWSHEGDQSDVMARVLRAEHRPVLDYLRHRGLTRGVTVPIRCGEGALA 131

Query: 143 GLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWIS 198
               + P G      DRL  +GLL     +          H      LT RE ECL    
Sbjct: 132 TFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLTRRERECLALCG 191

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG T+ EIA  +  S  TV  ++++  RK   + R  AIA A    ++
Sbjct: 192 EGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL 239


>gi|289424205|ref|ZP_06425988.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289426652|ref|ZP_06428381.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129970|ref|YP_003580633.1| putative Two-component system response regulator [Propionibacterium
           acnes SK137]
 gi|289154902|gb|EFD03584.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289160147|gb|EFD08322.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375832|gb|ADD99686.1| putative Two-component system response regulator [Propionibacterium
           acnes SK137]
 gi|313765489|gb|EFS36853.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772962|gb|EFS38928.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793016|gb|EFS41083.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802535|gb|EFS43757.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806550|gb|EFS45057.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811098|gb|EFS48812.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814401|gb|EFS52115.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815108|gb|EFS52822.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817418|gb|EFS55132.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821840|gb|EFS59554.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824266|gb|EFS61980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826630|gb|EFS64344.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828631|gb|EFS66345.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831864|gb|EFS69578.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834594|gb|EFS72308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314917145|gb|EFS80976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921419|gb|EFS85250.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926746|gb|EFS90577.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931258|gb|EFS95089.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954919|gb|EFS99325.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958851|gb|EFT02953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961142|gb|EFT05243.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964432|gb|EFT08532.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969529|gb|EFT13627.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974595|gb|EFT18690.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977213|gb|EFT21308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980470|gb|EFT24564.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985689|gb|EFT29781.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987215|gb|EFT31306.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314988893|gb|EFT32984.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078555|gb|EFT50586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082523|gb|EFT54499.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086234|gb|EFT58210.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087817|gb|EFT59793.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097430|gb|EFT69406.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099881|gb|EFT71857.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101810|gb|EFT73786.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110233|gb|EFT82209.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331484|gb|EGE73223.1| DNA-binding response regulator [Propionibacterium acnes HL096PA2]
 gi|327333470|gb|EGE75190.1| DNA-binding response regulator [Propionibacterium acnes HL096PA3]
 gi|327445507|gb|EGE92161.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447125|gb|EGE93779.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449840|gb|EGE96494.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454686|gb|EGF01341.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456761|gb|EGF03416.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327456969|gb|EGF03624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328756522|gb|EGF70138.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758750|gb|EGF72366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761756|gb|EGF75270.1| DNA-binding response regulator [Propionibacterium acnes HL099PA1]
 gi|332674812|gb|AEE71628.1| two-component system response regulator [Propionibacterium acnes
           266]
          Length = 206

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 61/235 (25%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +          E VG          L Q+
Sbjct: 1   MIDKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGRGDEVVG----------LVQD 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +       L      +E             L    F                + 
Sbjct: 51  TYADVCLLDIEMPGLDGITVAAELRDQAP---WCRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+GRE 
Sbjct: 108 VKDTPAEDLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSGRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R   +
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. WCH70]
          Length = 199

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 72/240 (30%), Gaps = 43/240 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +       +  L      L  +  +         +                 
Sbjct: 2   KIKVLLVDDHLLVMLGIQQLLENEADLEVVNTICHPARLEEEI---------------IK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +D   +  + +A +              +    +             
Sbjct: 47  HNPDVIVMDIRMKNDNGIEWTKKIAETYPT--------CKVVILSGYDYDEYIHAAYEAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              + +       +   +                      ++        D     +  L
Sbjct: 99  AYAFVTKENSAFELANAIR--------------------QSHLGIKSFPIDRLSNYNSPL 138

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E+  L  ISE KT+ EI+ +L ISR TV ++++SI+RK    +R GA+  A++  I+
Sbjct: 139 TKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRVGAVVKAMKLGIL 198


>gi|308177129|ref|YP_003916535.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307744592|emb|CBT75564.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 73/251 (29%), Gaps = 36/251 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +   V ++L  +D    + +  +      +  +   +                G   
Sbjct: 1   MNID-SPVTVLLVDDDSLIRAGLGAILGSDQRICIVGEAEN---------------GHRA 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L +        +D  +        +  +   + D           +    F       
Sbjct: 45  IELSQRLDPAVILMDIRMPQLDGLSAMESILDQKPD--------AKVMILTTFGDESYID 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              +G    +   +     +   ++ +      +          +A       ++ D   
Sbjct: 97  RALSGGAAGFMLKSSGPDELISAVLAVAEGAAALSPR-------IAQRVIEKVRNLDSSG 149

Query: 181 GKDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             D +     LT RE + L  +    T+ EIA  L ++  TV  ++ SIM K   + R  
Sbjct: 150 QSDAQTLVRKLTAREHDVLALVGASLTNSEIAGRLFLTEATVKGHMTSIMLKINARNRVD 209

Query: 236 AIAYAVRNNIV 246
           A   A R  IV
Sbjct: 210 AALIAYRAGIV 220


>gi|331651293|ref|ZP_08352318.1| transcriptional regulator UhpA [Escherichia coli M718]
 gi|331051034|gb|EGI23086.1| transcriptional regulator UhpA [Escherichia coli M718]
          Length = 209

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +  +  +         +  D      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAW-----SALIRDDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +         +   +   ++       +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQK--------PQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVGLGGHYLCADAIRAL-----------RGGGQPAQALEILTPREREVFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 158 VKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 207

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 24/224 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDW 82
            +    D       L   +     +  + E   G     +          +D  + +   
Sbjct: 5   RILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVAMAAKLKPDVVLMDLQLGAGID 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +A                L    + T  +           Y         +  
Sbjct: 65  GVEATRRIASPGTH----------VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +          +A+   +  +           LT RE + L  ++ G  
Sbjct: 115 AIRAAAQGRTALS-------APVASRVMDRMRGAAGPS-----LTDRERDILGQLARGLG 162

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 163 NREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKEQRLL 206


>gi|170692939|ref|ZP_02884100.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170141937|gb|EDT10104.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 215

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 56/222 (25%), Gaps = 20/222 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSD 81
           ++ L    D       L   +     +  + E   A     L          +D  ++  
Sbjct: 8   IARLILVDDHPLVRDGLRARLEAVRNLEVVGEAGNAQEALALAASLEPHLVLMDVGMNGM 67

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               L                     L   +   L           + Y         I 
Sbjct: 68  NGIALAGMFHER--------FPAIRVLMLSMHDNLEYVTQAVRAGASGYVLKDSPSTEII 119

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +                                      LT RE + L  ++EG 
Sbjct: 120 QAISAVLDGKTYFSAG-----------LGARLIQASAMQSPVERLTPRERDILDALAEGL 168

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +S +IA    +S  TV  +  ++ RK   + ++  I +AV N
Sbjct: 169 SSKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|417023|sp|P32967|GACA_PSEFL RecName: Full=Response regulator gacA; AltName: Full=Global
           activator; AltName: Full=Global antibiotic and cyanide
           control protein
 gi|551930|gb|AAA25821.1| gacA [Pseudomonas fluorescens]
          Length = 213

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    L  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLLKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPYVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++   +                   L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQ--------PSSDSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 209


>gi|330820500|ref|YP_004349362.1| DNA-binding response regulator, LuxR family [Burkholderia gladioli
           BSR3]
 gi|327372495|gb|AEA63850.1| DNA-binding response regulator, LuxR family [Burkholderia gladioli
           BSR3]
          Length = 214

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       + H+   +           +               AS   L+R  
Sbjct: 2   INVLIADDHALVRDGLRHILKDATGFEVAGEAHDS---------------ASTIALIRST 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +             L   +       +       
Sbjct: 47  PANVLVLDLSMPGRNGVELIKQIKDEKPT--------LRILVLTMHAEQQYALRAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +     A +   +  +   G  +               A+              L+
Sbjct: 99  SGYLTKESASAELVGAVGKVASGGVYVSLSMAERFAQSLNEPADTL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    I+ G+T  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +V
Sbjct: 151 DREFDVFRRIATGQTLTEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHRLV 209


>gi|120437119|ref|YP_862805.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117579269|emb|CAL67738.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 212

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 20/219 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R     H P   + +  ++  +  +  T R+ +     G   F  +  D      ++  +
Sbjct: 3   RVLIADHHPIILEGVKCVLQNNPALQVTGRVGS-----GTQLFNQLEKDAPDVLIVELDL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + +R +           ++       P        ++        Y S   D  
Sbjct: 58  PQINGINAIRRIKQEF-----PEVKTLIFSSHP---EEMYALSAIKAGAAGYISKHTDNE 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G  + R        +     +          K  +L+ RE E L  +S
Sbjct: 110 TLEKAIYQVARGGIYLNRS-------ITEKLNSGISRGKSLITKFKKLSTRETEVLNLLS 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            GK + +IA  L I+  TV+ Y   +++K      +  I
Sbjct: 163 SGKRNKDIAEALDINEKTVSTYKTRLLKKLKVDNVADLI 201


>gi|94266341|ref|ZP_01290042.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93453055|gb|EAT03537.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 24/224 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHF-----LLVRWDLFQEQKLDSIVSSDWPF 84
            ++ AR+  +D    +   + A+ E  G                   Q+ D I+      
Sbjct: 7   DNIAARIYLIDDHQLFREGLQAILETHGIDVVGSAGTAAEALQTVSSQRPDIILLD---- 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIR 141
             +        D    +    +     +      +     G+    + Y   T    ++ 
Sbjct: 63  --LHLGDADGVDCIEPLRSLCSAAKIILLTADESSDALNRGLQHDVDGYLLKTMPALKLV 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                             + LT RE E L W+SEGK
Sbjct: 121 EAISDALTGAIVLPTGLKR----------QTPAPLQPSPENQYGLTPREREILHWLSEGK 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EI VI  IS NTV +++  +M K     R      AV +  
Sbjct: 171 SNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESGY 214


>gi|91790427|ref|YP_551379.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91699652|gb|ABE46481.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 236

 Score =  104 bits (260), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 74/258 (28%), Gaps = 40/258 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V +++  +       +  L ++                   +               
Sbjct: 1   MKAVELLVVDDHTLFRRGLVALLSQDGRFEVAGEAGDIGEALRCVER------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      D +               +        V     +      
Sbjct: 48  --SKPDLILLDNHLPGVLGVDGIAA-----LKDAAPGTRILM---LTVSENEDDLAAALQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   T ++  +   ++ +     ++  + + ++      +A    + +    ++ 
Sbjct: 98  AGADGYLLKTVELDSLSESIIKVLDGESVVSPEMMTKLVAAFRSRALSSATGETAANEEG 157

Query: 185 E-----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                             L+ RE E L  IS G ++  IA  L I+  TV  ++  I+RK
Sbjct: 158 HDEAAPVPGRQDDSAIALLSAREREVLARISHGDSNKVIARKLDIAETTVKIHVQHILRK 217

Query: 228 TATKTRSGAIAYAVRNNI 245
               +R  A  YA  +++
Sbjct: 218 LQLSSRVQAAVYAAAHDL 235


>gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR
 gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum]
 gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae
           WPP163]
          Length = 245

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 28/228 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              +      + G   +  +  +  +    + ++ S+   +       +       V+  
Sbjct: 15  IKSQFDMALSHYGDIKYAYMVLNKKKPT--EILIISNHHDEWREIYQANNYQHIDPVVIA 72

Query: 105 PTELFCPVFHTLPENIT------------PPAGMDNRYCSLTFDVARIRIGLMLLFPKG- 151
                 P        ++                + N Y  +  D +   + L ++  +  
Sbjct: 73  ALNKITPFPWDEDLLVSTQLKMSKIFNLSREHNITNGYTFVLHDHSNNLVMLSIMIDESN 132

Query: 152 ----RIILRDRLWEIGLLAAYQANMFKSY---------DVHWGKDFELTGREVECLTWIS 198
                 ++     ++ +          S          D         + RE E L W S
Sbjct: 133 VSNIDDVIESNKDKLQMTLMTIHAETISLYREMIRNKEDERSNDKDIFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GKT  EIA+IL I   TV  +I ++++K        AI   +   ++
Sbjct: 193 MGKTYQEIALILDIKTGTVKFHIGNVVKKLGVLNAKHAIRLGIELQLI 240


>gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1]
          Length = 210

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 18/211 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           A  E      +     +     ++  I   +            +      V+ R      
Sbjct: 1   AFFEDYQGVIYAYAIMNKKDPSQMQII---NNNPAWFDVYLERKYQFIDPVIIRGLRCVE 57

Query: 111 PVFHTLPENITPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDR 158
             F      ++    +   +                 D     + L ++  K      D+
Sbjct: 58  DYFWENEVILSEGYNLTRIFNESFQYNIYRGQTFPLHDYLNNLVVLSVIGKKEFDFDIDK 117

Query: 159 LWEIGL-LAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                +    +      +        K+  L+ RE + L W+S+GKT  EIA+IL I+  
Sbjct: 118 HRAKFMSFLIHLHQKTLNLYSQHQQKKNAFLSPRERQILKWVSDGKTYAEIAIILSIAER 177

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  ++ ++M+K        AI       ++
Sbjct: 178 TVKFHMGNVMKKLGVNNARHAIKLGAELRLL 208


>gi|332523779|ref|ZP_08400031.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315043|gb|EGJ28028.1| response regulator receiver domain protein [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 198

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 64/225 (28%), Gaps = 31/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++     V    +        G     L++ +      LD  +   
Sbjct: 5   VADDQSMLRDALCQLLTYQSGVDAVFQAEN-----GQKAIDLLKQEAIDVAILDIEMPEK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +            Q    +    F          A   + Y      ++ + 
Sbjct: 60  SGLDVLEWVRE---------HQELKVIIVTTFKRKGYFQRALAAHVDGYVLKDRSISELM 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + + E+                       L+ RE E ++ + +G 
Sbjct: 111 QTIHSVLEGRKEYSPELIEEVTF-----------------STNPLSPREQEVMSLVVQGA 153

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+  +  K     R+ A         +
Sbjct: 154 SNHEIAQKLFLSNGTVRNYLTCVFTKLNANNRTEAAKIVQEKGWI 198


>gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 207

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 77/242 (31%), Gaps = 38/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q+ ++L  +       +  +      +  +                    G     L 
Sbjct: 1   MKQIKVLLIEDHFLARMALQSVLAGHAQIRIVGEASD---------------GEQGIELY 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +     FD++  +            +    +    +H   +      
Sbjct: 46  RSLSPDVVVLDLRLPRVSGFDVITLLRKEP--------RPARIVVLSNYHGSEDIYRAVR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +       +   +  +    R + R  L  +                      
Sbjct: 98  SGAMAYLTKDASGEELINAIQNVDRDLRYLPRVALDRLA---------------ERMPAV 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I++G+++ EIA  L I+  TV  +++S++ K   + R+ A  YA++  
Sbjct: 143 ELTPRESEVLICITQGRSNREIAEQLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQRG 202

Query: 245 IV 246
           +V
Sbjct: 203 LV 204


>gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385]
 gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385]
          Length = 224

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 10/153 (6%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
              +    +    +   +     P  G       L       +  + L     R    D 
Sbjct: 73  DPFVAAVLQSGRGIMAFMDPYNHPDYGKR----LLLAGQHGEKKAIFLTSFGNRHPSSDE 128

Query: 159 LWEIGLLAAYQAN------MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +  + LL  +  +                    LT RE E L W+  GK++ EI+ +L I
Sbjct: 129 IDTLYLLTPHLYSASDAIAHQSQQLHLPPPLNPLTDRECELLPWLKLGKSNWEISRLLNI 188

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV  ++ +I RK  T  R+ AIA A+    
Sbjct: 189 SERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|84495578|ref|ZP_00994697.1| two-component response regulator [Janibacter sp. HTCC2649]
 gi|84385071|gb|EAQ00951.1| two-component response regulator [Janibacter sp. HTCC2649]
          Length = 207

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 64/236 (27%), Gaps = 34/236 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + +   + V  L      L+ +            + A                
Sbjct: 2   IRVYLVDDHQLVRAGVRTLLESDPGLSVVGEARDGQEAVAGIDAAA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +  D           L    F          A   
Sbjct: 48  -SDVVLMDLSMPVMDGVEATRAILSTHPD--------TRVLVLTSFSDRERVKEVLAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     + A +   +         I       +   A               +   L+
Sbjct: 99  IGYVLKDAEPADLLAAVHAAARGEVPIDPRVAGALLPSAG--------GPSVADR---LS 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE + L  +++G  + ++A  LGI+  TV  ++  + R+     R+ A  +A  +
Sbjct: 148 PRETQVLRLVAQGLANKQVARALGITERTVKAHLGRVFREIGVLDRTSAALWARDH 203


>gi|83952460|ref|ZP_00961191.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius
           nubinhibens ISM]
 gi|83836133|gb|EAP75431.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius
           nubinhibens ISM]
          Length = 251

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 65/245 (26%), Gaps = 30/245 (12%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             + +L+R+       S    + AL   +     L          +    +    P    
Sbjct: 8   RLTTILSRLDTEAGLSSLPATVEALRRALKVDQILFCSSTGPDRSQNWHTL----PPGWT 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTFD 136
              A     +   V         P      +   P A                +      
Sbjct: 64  ARYAQQGYHRIDPVRAEAQRRVTPFDWRPLDWQRPAARALRADAVAHGIGPQGFTIPAHG 123

Query: 137 VARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMF-----------KSYDVHWG 181
                  L +   +       + R   + + L A    +                     
Sbjct: 124 PNGQLALLSITADRDDATWTDLTRANRFALILAAHALHHKIMSQPDAGLGEDPDSAAATP 183

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE + +T ++ G +  +IA  L IS +T+ +YI +   K        A+A A+
Sbjct: 184 PAPRLSPRETDVITLLARGDSRGQIATKLAISEHTLRSYIETARHKLGAVNTPHAVARAI 243

Query: 242 RNNIV 246
              ++
Sbjct: 244 AMGMI 248


>gi|310640662|ref|YP_003945420.1| two component transcriptional regulator, luxr family [Paenibacillus
           polymyxa SC2]
 gi|309245612|gb|ADO55179.1| Two component transcriptional regulator, LuxR family [Paenibacillus
           polymyxa SC2]
          Length = 214

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 25/225 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     LA +I +   V +        E +      ++         LD  ++ 
Sbjct: 4   VIVDDHPLVRKGLAAVISMQPNVQFAGEAQNQQEAL-----AVIEETDPDLVLLDLKLAD 58

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +   D+++               R   +      T  + +       + Y         +
Sbjct: 59  ESGLDIIKIARGRGF--------RSKFILLTSSATREDFLKAEEASVDGYVLKEALPEEL 110

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              + L+    +      L           N  +    +   D  LT +E E L  + +G
Sbjct: 111 IYAIHLVNKGRKYYDPAILE----------NKLREDAGNLTDD--LTPKEKEVLVELGQG 158

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + EIA  L IS  TV  +++ I+ K     R+ A  YA    +
Sbjct: 159 ACNREIASRLFISEFTVKKHVSQILAKLRLADRTQAALYANAIGL 203


>gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
 gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR
           [Brucella sp. NVSL 07-0026]
          Length = 268

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 30  QSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 89

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 90  IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 147

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 148 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 207

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 208 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259


>gi|327188744|gb|EGE55942.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 207

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 33/239 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + +  +       V+   +       +     +                   ++ 
Sbjct: 1   MTAITVGVVDDHPLFREGVTRSLSEMSDFVVIGEGASSEDAA---------------MIA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD  +       +   +A S              L   V   +   +    
Sbjct: 46  SNNRPDVMLLDVSMPGGGLAAIGNVLAQS---------PTTKVLMLTVSEEVDTLLGALQ 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +    R I      ++   + +                
Sbjct: 97  QGAMGYVLKGVGSRGLAEAIQTVLSGARYISPTMSTKVMENSLH---------DAASDKT 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A       
Sbjct: 148 SLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAALQWRER 206


>gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 218

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 21/218 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVG----ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R++    +  W   + A     G    A    L +     EQ    +V  +   DL+   
Sbjct: 8   RILLSSNSSQWRDGLAAAFAASGRFEVAGSVDLDQMIQTAEQLQPEVVLWELKEDLL--Y 65

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+E             +  P        +            L     +I   + L+   
Sbjct: 66  MLTELKACCPFTVTVVMVGNP---NRFNLLELVRTGVMGCLPLRLLPQQIVSAVELVVGA 122

Query: 151 GRI--ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           G +     D    +G                 G    L+ RE E L  ++   ++ EIA 
Sbjct: 123 GLLCLPRPDLKTSLGT----------ETGESKGTFSILSRREEEVLAMLANKLSTQEIAA 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S +TV  ++ +I RK   + R+ A+A A +  +V
Sbjct: 173 SLYLSESTVKTHLRNIFRKLGVRNRTEAVAAAYQLGLV 210


>gi|295838096|ref|ZP_06825029.1| two-component system response regulator [Streptomyces sp. SPB74]
 gi|295826844|gb|EFG65089.1| two-component system response regulator [Streptomyces sp. SPB74]
          Length = 219

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 23/224 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDW 82
            L    D       L   ++    +    E   G     L          +D  + +   
Sbjct: 16  RLLLCDDHAVVRAGLRALLASAAGIEVSGEAGSGEEAVALAAKLRPDLVLMDLQLGAGID 75

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +                 L    + T  +           Y         +  
Sbjct: 76  GVEATRRLLALPAPP--------RVLVLTTYDTDADVTRAVNAGATGYLLKAERPEELFA 127

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +          +A       ++         ELT RE + L  +S+G  
Sbjct: 128 AIHAAARGRTALSP-------PVAHRVLAHLRAPRP------ELTPRERDILAQLSQGLG 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L IS  TV  ++  + +K    TR+GA+A A    ++
Sbjct: 175 NRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 218


>gi|34541106|ref|NP_905585.1| LuxR family DNA-binding response regulator [Porphyromonas
           gingivalis W83]
 gi|34397422|gb|AAQ66484.1| DNA-binding response regulator, LuxR family [Porphyromonas
           gingivalis W83]
          Length = 227

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 73/245 (29%), Gaps = 28/245 (11%)

Query: 8   VNIVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++IVL  + E  R    + +     L   +            +    E            
Sbjct: 2   ISIVLVDDHELYRVGLRAAISQMQGLAEIVGECSSCEELETFLKEQKE------------ 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                     I+   W  D        +  K Y  ++           T+ E +      
Sbjct: 50  -------PGLIILDIWLPDGNGVNIARKLKKLYPAVKIIILSSEVSEKTVNELLAID--- 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL-----AAYQANMFKSYDVHWG 181
              Y   T  +  I   +  +        +     I  +     A       K       
Sbjct: 100 VEGYICKTAQINDIGNAIRTVTTGSHFYGKSVSKMILDICVSRSADQSHKKSKKQQQQQN 159

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              ELT RE E + ++ +G ++ E A  + +S  TV  + ++I+ K      +  I YAV
Sbjct: 160 DSSELTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFTNAAELIRYAV 219

Query: 242 RNNIV 246
           ++ +V
Sbjct: 220 KSGLV 224


>gi|84393735|ref|ZP_00992484.1| two component response regulator UhpA [Vibrio splendidus 12B01]
 gi|84375664|gb|EAP92562.1| two component response regulator UhpA [Vibrio splendidus 12B01]
          Length = 202

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 27/220 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  ++      +  E       L +         LD  + 
Sbjct: 4   VALVDDHVIVRSGFAQLLSLETDITVVGEFNSAAEAR-----LGLPSCHPDVVILDISMQ 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                 +   V  +              Y S       
Sbjct: 59  DESGLSLLEEIPS-----------GIASIMLSVHDSPAMVEKSLELGAKGYLSKRCSPDE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +      G  +  D       +A   A   K+         +LT RE E    ++ 
Sbjct: 108 LIQAVHTSANGGCYLTPD-------IAIKLATPMKNKASLN----QLTRRESEVCQLLAT 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G     IAV LG+S  TV+ + A+ M K   K        
Sbjct: 157 GLDVKSIAVELGVSHKTVHVHRANAMDKLNVKNNVELAKL 196


>gi|313840174|gb|EFS77888.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
          Length = 206

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 61/235 (25%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +          E VG          L Q+
Sbjct: 1   MIDKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGRGDEVVG----------LVQD 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +       L      +E             L    F                + 
Sbjct: 51  TYADVCLLDIEMPGLDGVTVAAELRDQAP---WCRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+GRE 
Sbjct: 108 VKDTPAEDLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSGRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R   +
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|313835697|gb|EFS73411.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928368|gb|EFS92199.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970220|gb|EFT14318.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
          Length = 228

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 30/240 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E + + +++  +       +  L  + D +  +   +                G +    
Sbjct: 10  ENEAITVLVVDDSAVMRLGLRTLLEQDDDIEVVGEAEN---------------GDTAVRC 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +       ++  +A              T +               
Sbjct: 55  ATELQPDVILLDIRMPRRDGLSVLSQLAA-----------GSTVIMTTFTDDAGAIRRAM 103

Query: 124 AGMDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                 Y    TFD   +   +         +    +  +   A               +
Sbjct: 104 DEGAAGYLVHGTFDAHALGHMIRSAKAGVMPVAPMVMSAL---AGRGHGTQIGRFPGIRR 160

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ R+ E +  I+ G+++ EI+  L ++  TV N+I  I       TR+ AI   ++
Sbjct: 161 NMGLSDRQAEVMDLIAAGQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 220


>gi|189219523|ref|YP_001940164.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189186381|gb|ACD83566.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 18/224 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +   V       + L ++I     +S                F L+   +     +D  
Sbjct: 19  HKVLIVDDHAILREGLIQLINSTPGLSVCGAAKNA-----HEGFELIEKTMPDVVLVDIS 73

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L++ +  +     Y  +                           Y       
Sbjct: 74  LPGKSGLELIKDIHAA-----YPDIALLVLSM---HEESLYAERVLRAGARGYLMKNEGG 125

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  +   G  +       I  L                    L+ RE E    I
Sbjct: 126 QKLIAAIQKVLAGGISVSERVANRI--LQGVSGKRKALSISPIEA---LSDREFEVFQLI 180

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +G  S +IA  L +S  TV  Y ASI +K   K+    + YA+
Sbjct: 181 GKGYGSRQIAEQLSLSVKTVEAYRASIKQKLYLKSGPQLVHYAI 224


>gi|119773784|ref|YP_926524.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766284|gb|ABL98854.1| two component transcriptional regulator, LuxR family [Shewanella
           amazonensis SB2B]
          Length = 209

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 21/220 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P     + ++I  D   +      +     G      V  D      LD  + 
Sbjct: 7   VLVVDDHPLLRRGICQLIASDKDFTLFGEAGS-----GLDALSAVANDEPDIILLDLNMK 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +  +                 +   V     + I       + Y     +   
Sbjct: 62  GMTGLDTLNGLRQEGVT--------SRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDL 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L       R+I             Y     K+          LT RE++ L  ++E
Sbjct: 114 LLEKLKHAMLGHRVISEAV-------EEYLFE-LKNATDENEWIDALTPRELQILEQLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G ++  I+  L IS  TV  ++ +++RK   K+R+     
Sbjct: 166 GLSNRLISEQLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205


>gi|296101486|ref|YP_003611632.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055945|gb|ADF60683.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 209

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 72/214 (33%), Gaps = 24/214 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
            A+++ L+  +    +  +  E        ++  +      +D  +  +    L++ +  
Sbjct: 17  FAQLLNLEEDLVVEGQFSSAAEAWP-----VLSRNDIDVAVMDVAMPDENGLSLLKRLRQ 71

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                          +   ++ T     +      + Y +       +   +  +   G 
Sbjct: 72  QRPTF--------RAIILSIYDTPAFVQSALDAGASGYLTKRCGPEELVQAVRTVGMGGH 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +  D +  +           +  +        LT RE E    + +G++  EIA  L +
Sbjct: 124 YLCADAVKAL-----------RGGEPMPKVLEALTPREREVFELLVKGESVKEIAYTLAL 172

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV+ + A+++ K    +    + +A+ N ++
Sbjct: 173 SHKTVHVHRANVLGKLQCNSTIDLVHFALDNQLL 206


>gi|326315443|ref|YP_004233115.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372279|gb|ADX44548.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 254

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 69/257 (26%), Gaps = 41/257 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + + +  +       +  L ++   L  +                          L 
Sbjct: 18  ATPLRVFVVDDHTLFRRGLIALLSQYPSLRVVGEAGDAGEALR---------------LA 62

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD+ +      + +R +           +     L   V     +      
Sbjct: 63  PPLAPQVLLLDNHLPGVRGIEAIRGLRE--------AMPGVRVLMLTVSEDGEDLAQALR 114

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T +   +   +        ++  + + ++      Q     +       D 
Sbjct: 115 QGAQGYLLKTIEGDLLADAIGRAARGEPVVSMELMGKLVAAFQAQGGPPAAPVRAVDADA 174

Query: 185 E------------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           E                  L+ RE + L  I+ G ++ EIA  L I+  TV  ++  I+R
Sbjct: 175 ETAAIACEPEAATPGGASPLSPREEDVLREIARGASNKEIARALDIAETTVKIHVQHILR 234

Query: 227 KTATKTRSGAIAYAVRN 243
           K    +R  A  YA   
Sbjct: 235 KLGLSSRVQAAVYASER 251


>gi|291301282|ref|YP_003512560.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570502|gb|ADD43467.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 206

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 62/218 (28%), Gaps = 19/218 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D +     L   ++    M  + E   ++           E   D ++      +   
Sbjct: 6   VDDHVVVRAGLAALINGEADMTVVGEASDSA----GAVRGIAESAPDIVLMDLQLGEGPD 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +A  E                  + +  + +         Y         +   +    
Sbjct: 62  GVATIETVLAAPAPPAILV--LTTYDSDADVVRAVEAGARGYLLKAGPPEELFTAIRAAA 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++           A       +           LT REVE L  ++ G ++  IA 
Sbjct: 120 RGEPVLSPAV-------ADSMMRHLRQ------PRTTLTSREVEILRALARGDSNRAIAK 166

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L I+  TV  ++  I  K    +R+ A+A A+   ++
Sbjct: 167 RLFITEATVKTHLVHIYAKLDVDSRTAAVAAALERRLI 204


>gi|269955518|ref|YP_003325307.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304199|gb|ACZ29749.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 226

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +V+  + +   + V       + +  +                          +V  
Sbjct: 11  PVPVVIVDDHDMFRAGVRASL--DERVTVVGEAATVDE---------------AVAVVHE 53

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +    P       A   +     +      L   V     + +      
Sbjct: 54  KRPPVVLLDVHL----PGGTGGGGAEVVRLCADLLSGGTRFLALSVSDAAEDVVAVIRSG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +       +   ++ +     +         G +            V   +   L
Sbjct: 110 ARGYVTKNISARDLSGAVVQVAGGDAVFSP---RLAGFVLDAFGTAAGEVSVADDELDRL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E +  I+ G +  E+A  L IS  TV  ++++++RK    +R     +A   +I+
Sbjct: 167 SRREQEVMRLIARGYSYREVASELFISIKTVETHVSAVLRKLQLSSRYELTRWAAARHIL 226


>gi|325676385|ref|ZP_08156064.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
 gi|325552946|gb|EGD22629.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC
           33707]
          Length = 236

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + L  + E     +  L   +  L  +           R+                  
Sbjct: 28  TRVFLVDDHEIVRRGLVDLLGSAPDLTVVGEAASVGEAMARI---------------PSS 72

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +          VL     L    F              
Sbjct: 73  GADVAVLDVRLPDGNGVELCRDLRT--------VLPDLRCLMLTSFADDEALFDAVMAGA 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   G ++       +              +       EL+
Sbjct: 125 SGFVLKQILGTDLISAVRTVGAGGSLLDSRATAALMQRM--------RSERTADPLAELS 176

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E      I +G T+ EIA  L ++  T+ NY++ ++ K   + R+ A   A   
Sbjct: 177 DQERAVFDLIGQGLTNREIAERLFLAEKTIKNYVSRLLAKLGMQRRTQAAVLATEL 232


>gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter
           segnis ATCC 21756]
 gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter
           segnis ATCC 21756]
          Length = 201

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 65/239 (27%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +     +S L      +  +                    G     LV+ +
Sbjct: 2   IRVVIAEDQKMVLGALSALLEMEGDIQVVGRAAD---------------GEQAMTLVQAE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D+   +                 L    F              
Sbjct: 47  KPDVLISDIEMPGMTGIDVATRLKAEG--------AGTRVLIVTTFGRPGYLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       + +   +  +   GR I  +    I                   +   LT
Sbjct: 99  KGYLLKDGPSSVLAAAVRTVAAGGRAIAPELSEAI----------------WDAEPDPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EG+++ +IA +L +S  TV NY++   +K     R  A   A  N  +
Sbjct: 143 DREREILRLAEEGRSNKDIAEVLELSPGTVRNYLSEAAQKLGAANRVEAGRIARSNGWL 201


>gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 15/215 (6%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  L    G              +     V + +P   V    L+   K   ++++  
Sbjct: 27  AAIRILQAGYGLDFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLLNSYVKVDPIVKQGF 86

Query: 107 ELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRIGLMLLFP----KGR 152
           E   P   +  E                   N Y     D A+ R  L +       +  
Sbjct: 87  ERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRALLSMNARIPAEEWA 146

Query: 153 IILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++R    E   +A                    L+ RE+ECL W + GK   +I+VILG
Sbjct: 147 ELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILG 206

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 207 ISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 241


>gi|150391445|ref|YP_001321494.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951307|gb|ABR49835.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 201

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 36/236 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D+     +  L +R   +  M   +                GA      R  
Sbjct: 1   MKILIVDDDQLVCQSLQVLLSREQDMDVMATANN---------------GAEAITCCRDI 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +         R +        +  ++         F          +   
Sbjct: 46  LPDVVLMDIQMPVMDGIQATREIKKE-----WPQIRIMM---LTTFQDEQNIRLAISAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   + +V+ +   L +LF    ++  D L  +                      ELT
Sbjct: 98  EGYLIKSTEVSSMAQQLRVLFSGTSVLDADVLKRLMQPQRKGFE-------------ELT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE + +  + +G ++ EIA  L IS  TV N ++ I+ K   + R+    Y  R 
Sbjct: 145 PRERDIVELVVQGLSNREIAEQLYISEGTVRNTLSIILEKLQVRDRTQLAIYYWRR 200


>gi|114706025|ref|ZP_01438928.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
 gi|114538871|gb|EAU41992.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
          Length = 223

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 73/226 (32%), Gaps = 21/226 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +   PT  D LA ++      +      A +E +      +          +D  +  
Sbjct: 7   AIIDDHPTLRDGLASLVGGVNGYAVAAVGTAASEIL-----SIAMHVEPDVMLVDLQMPG 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           D    +VR              +                I       + Y      +  +
Sbjct: 62  DVLKTIVR------TRGLAPETKIVMFTASDRVDH---VIAALDAGADGYVLKGSSLEEL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            + +  +      +          L++     F+       K  +L+ RE + + ++SEG
Sbjct: 113 LLAVEDIKAGKTYVSPS-------LSSKMIQSFRQKAETQRKRVDLSLREEQIIRFLSEG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  IA+ L IS  TV +Y+  +++K   + R   +  A R  ++
Sbjct: 166 LPNKTIAIRLNISEKTVKHYMTGLIQKLEARNRLEVVMRAQRMGLL 211


>gi|325474944|gb|EGC78130.1| hypothetical protein HMPREF9353_00977 [Treponema denticola F0402]
          Length = 140

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 1/138 (0%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY- 168
              F+             + Y         I  G+        +I  +    +       
Sbjct: 3   LTTFNDTEYIQKALQYGASGYLLKDSSPDVIYDGIKAAISGNIVINPEVAKTMLFENHEE 62

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                         +F L+ +E+E +  +SEG ++ +IA   G+S  T+ N I+ I  KT
Sbjct: 63  AEERLIRPLSEIQDEFGLSQKEIEIIRLVSEGLSNKQIAYKQGLSEGTIKNNISVIFDKT 122

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+   A+A +N IV
Sbjct: 123 FVSDRTQLAAFAFKNGIV 140


>gi|311106078|ref|YP_003978931.1| response regulator 7 [Achromobacter xylosoxidans A8]
 gi|310760767|gb|ADP16216.1| response regulator 7 [Achromobacter xylosoxidans A8]
          Length = 215

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 55/228 (24%), Gaps = 18/228 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R   +   P   D L   +     +              A     +  D        
Sbjct: 3   EAIRLLLIDDHPLVRDGLRLRLETVPQLRVVGEAGNAAAAQ-AFLAACLAEDPQGGTLPH 61

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +       +      +   + Y  +                 +         Y     
Sbjct: 62  LALMDLNMPGVGGLELTALLHERYPQIAVLVLSM---HDNPEYMVQAVKAGARGYLLKDE 118

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               I   +  +              +                       LT RE + L 
Sbjct: 119 PAQEIVTAIDAVMAGRSYFSAAVAVRL--------------SQATAPATMLTQRERDVLR 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            I+ G+ + +IA  LG+S  TV  +  +I RK     ++  I YAV N
Sbjct: 165 HIASGEANKQIAQALGLSVRTVETHRLNIKRKLGIDGQAELIKYAVEN 212


>gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
 gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM
           2876]
          Length = 218

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + + S   DV  ++  +  ++   + I  +       L  +        D    
Sbjct: 94  VIREGCDGFISKDCDVEILKRAVYSVYEGKKYIQPE-------LEKFLNINVTQEDDPEE 146

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT RE+E L  IS+G  + +I+  L I+  TV N+++SI RK     R+ A  +AV
Sbjct: 147 RIKNLTKREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQAAVFAV 206

Query: 242 RN 243
           +N
Sbjct: 207 KN 208


>gi|15603205|ref|NP_246279.1| UhpA [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721709|gb|AAK03424.1| UhpA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 199

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 39/229 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S  + L    + L  +            + ++               
Sbjct: 2   IKVALIDDHIIVRSGFAQLLALENDLHVVGEFSSAKEARQHLPSV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +    L++ +                 +   V  +            
Sbjct: 47  RPDVCIIDISMPDETGLALLKDI---------PSGIHC--IMLSVNDSDIMVRKALELGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +F  G  ++ +   ++              +       +LT
Sbjct: 96  KGYLSKRCHPDELIQAVHAVFAGGLYLMPELTSKL-------------LNPTASYTQQLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            RE+E    ++ G  + EIA  L +S  TV+ + A+ M K   K     
Sbjct: 143 RREMEVCELLTTGLDAKEIAQQLNVSFKTVHVHRANAMSKLNLKNNVEL 191


>gi|330505440|ref|YP_004382309.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328919726|gb|AEB60557.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina NK-01]
          Length = 212

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       +  L      +         +    R+                  
Sbjct: 2   INLMIVDDHMIMREGLKRLFELDKDIHIAAEAADGLQALERLRT---------------K 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L+  +    +     +L                 +       
Sbjct: 47  HVDLLLLDISMPGLSGEALISRLI--HQYPRLPILVLSMHS------DPHVAMRVLRSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + T     +   +  +    R I  + L +I L +                   LT
Sbjct: 99  TGYLTKTQSPETLIAAVKKVSTGARYIDPELLEQIALNSLK--------SNPSSGLDSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE + +  +++G + ++IA  L IS  TV+ +  ++M+K    + +  I +A + 
Sbjct: 151 NREFQIMRLLADGHSINQIAEQLMISNKTVSTHKINLMQKMGFSSNADLIKFASKL 206


>gi|217969732|ref|YP_002354966.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507059|gb|ACK54070.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 226

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + ++L  +     + +  L      +A +                    G     L 
Sbjct: 1   MEGMRVLLVDDHSLVRAGIRALLGSIAGVAGIEEASS---------------GRQAVELA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         R +A +       V+          F           
Sbjct: 46  ATMQPDLVLMDIAMDDMDGLAATRTIAAAHPHIK--VVILSMHDTGDFF------EQALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y      VA + + +  +      +       +        NM            
Sbjct: 98  CGARGYLLKDAAVAELEMAIAAVMRGDVYLSPAVSRHL------VGNMLARPPEDERAAS 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+ E L  I  G  + EIA  L +S  TV  + A IM +   +  +  +  A R  
Sbjct: 152 VLTPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRAQIMERLGVRDIANLLLEAARRG 211

Query: 245 IV 246
           ++
Sbjct: 212 LI 213


>gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
 gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 69/227 (30%), Gaps = 24/227 (10%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
           T      +           F    ++  Q++K   ++ S++P + V     ++  K   V
Sbjct: 17  TAEIHDLLQHEMNINQPIRFAYFIFNKSQDEKP--VIYSNYPKEWVEKYMKNKLYKQDPV 74

Query: 102 LQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           L   ++                         +    +   Y     D       L L   
Sbjct: 75  LLVASQKIMSFPWQKNYFKKTKHQKSNIFAQSSEYNITRGYTFPLHDHENNLAMLSLYTE 134

Query: 150 KGRI-----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISE 199
                    I         L  +                       LT RE+E L W S 
Sbjct: 135 SDPDQLMKCISDHEDRLYLLFLSIHNRFLAEKAQQTNTSNTKIEKRLTSREIEALHWASI 194

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT  EIA+I+GI+ +TV  +I +++ K        AI  A   +++
Sbjct: 195 GKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKATDLHLL 241


>gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564]
 gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564]
          Length = 199

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +++   + ++ +   G     L   +      LD  +      
Sbjct: 3   LLVAEDQSMLRDAMCQLLAFQADVESVLQAKNGQEAIQLFEKESVDIAILDVEMPVKTGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++  +     +    V+          F              + Y      +A +   L
Sbjct: 63  EVLEWIRAENLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSIADLMHTL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G+    + +                 +V       LT +E+  L  I++G ++ 
Sbjct: 115 HTVLEGGKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGFSNQ 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 158 EIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 225

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 74/220 (33%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +      +T   G     ++  ++      D ++     
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGY-EVITAENGREALEILEHEVPDMIICDVMMPEMDG 78

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V  +  +E+  +  VL    +          + +       + Y    F+   +   
Sbjct: 79  YTFVEQVRQNERTSWIPVLFLSAKGQSA------DRVKGLNKGADVYMVKPFEPEELVAQ 132

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                 I               +    D +LT  E++ + +++ G  +
Sbjct: 133 V----------ESSLKQTIRWKEHQTKGGENGSRIQVPFDVQLTPTELKVVQFVARGLAN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S+ TV +++++++ KT    R+    +A+ N
Sbjct: 183 REIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 254

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALQTLDSCLDRVFRNVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   + + P                   GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|124265550|ref|YP_001019554.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124258325|gb|ABM93319.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 210

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 64/239 (26%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +          L      +  +           +  AL               
Sbjct: 3   IRVMLVDDHAIVREGYKRLLELQSDIVVVAEAGDGGEALNQWRAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L+  +   +        +    L   +               
Sbjct: 48  RPAVVVIDLGLPGMGGLELIARLRQRD--------EACRMLAFSMHRDAVWVAQALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + +   +++   +  +    R++  D   E+              D        L+
Sbjct: 100 LGYVTKSSAPSQLVAAVREVNQGRRVLSPDVSGEVA---------SALLDPQDSAAHGLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  +  G+T  EIA  L +S  TV+N    I  K  T +       A +   +
Sbjct: 151 PREFEVMRLLVGGRTPQEIAQSLSLSVKTVHNVHYQIKSKLGTASDFELARMAWQRGWI 209


>gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 240

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 82/241 (34%), Gaps = 24/241 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           S    L  +  +++ +  LD   +    +  L    G+   +  ++       L + ++S
Sbjct: 8   SATKDLLIQQ-MVSTITELDGQTAIENALEWLRRECGSERAMFYQFKGP---LLLTFITS 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLP--------------ENITPPAG 125
           +            E  ++  V++                             +       
Sbjct: 64  NVDDAWGEAYRRHELIRHDPVIR-CYHHELGFVNWQDAFRQYPISACYKKAVDACELLPA 122

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           +   Y +     A     +  L    R I  ++ + I  L     ++ +           
Sbjct: 123 VSYGYTN-HCRGADSVTSVCTLGDIERAISAEQKYLISSLMPVLHSVARGLKF---SSRG 178

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   +
Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIREVSESTVKFHLKTIYSKLGVANRAQAVGEALCRGL 238

Query: 246 V 246
           +
Sbjct: 239 I 239


>gi|254381656|ref|ZP_04997020.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194340565|gb|EDX21531.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 221

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 63/233 (27%), Gaps = 18/233 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
                 R           + LA ++ L   +             G      V        
Sbjct: 6   AEPKRLRVVVADDQAAVREPLAAVLALTGDLDVVAAA-----ANGTEVLAAVAAGPVDVV 60

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +  R +A                +    F      +         Y +
Sbjct: 61  LMDLRMPVMDGTETTRRLAEEH--------PEVAVVVLTTFADDESILGALGAGARGYLT 112

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  I   +        ++ R+    + +         ++         +LT RE E
Sbjct: 113 KNAGRQDIARAIRAAAAGQSVLDREVQDRLLVTV-----RTRAPAPARPLPEDLTPRERE 167

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  I +G  +  IA  L +S  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 168 VLALIGQGLPNRAIAQRLFVSEATVKTHINNLFAKAGIRDRADAVRRAIAAGL 220


>gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 212

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 65/241 (26%), Gaps = 35/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++V +++  +     + V  L    D +  +                    G +   LV 
Sbjct: 4   ERVRVIVVDDHTVMRAGVVALLAGEDGIEIVGEAGD---------------GRAALELVE 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +           +             R   L    + T  +       
Sbjct: 49  RYDPDVALVDLRMPVLDGVGATAEIVARH--------PRTRVLILTTYDTDQDIERGVEA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y        ++   +        ++      ++                       
Sbjct: 101 GAIGYLLKDTTREQLADAIRSAARGETVLAPRVAEKLIARMRRPVQDP------------ 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G T+ EI   L I+  TV  ++  +  K     R+ A+  A+   +
Sbjct: 149 LTARETDVLNAVADGLTNAEIGKRLVITEATVKTHLLRLFAKLDVNDRTRAVVVALERGL 208

Query: 246 V 246
           +
Sbjct: 209 L 209


>gi|311745274|ref|ZP_07719059.1| putative nitrate/nitrite DNA-binding response regulator
           [Algoriphagus sp. PR1]
 gi|126577803|gb|EAZ82023.1| putative nitrate/nitrite DNA-binding response regulator
           [Algoriphagus sp. PR1]
          Length = 214

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V  +L  +       +  L      +  +       S    +               
Sbjct: 1   MNEVKTILVDDHPIVMEGIEMLLLEIPEIQLLGKFTNGKSAQEFL--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +       L + +  +              +   +            
Sbjct: 46  SVTAVDLIITDISMPELDGLQLTKWVKQNH--------PETKVIILSMHDNDHYVQEIIL 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +   G             +     + F+  +       
Sbjct: 98  ADAEGYLLKENTSEELVNAVNRVLDDGIYYSD-------QIVGKLRSNFQLQNKKHEILQ 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L  I +  T+ EIA  L ISR+TV ++  ++ +KT   +  G + +++ N 
Sbjct: 151 SLSERELDVLQLIIQELTTQEIADKLFISRHTVESHKKNLFKKTDQNSLVGLVKFSISNQ 210

Query: 245 IV 246
           ++
Sbjct: 211 LI 212


>gi|328908051|gb|EGG27810.1| LuxR response regulator receiver [Propionibacterium sp. P08]
          Length = 221

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 30/240 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E + + +++  +       +  L  + D +  +   +                G +    
Sbjct: 3   ENEAITVLVVDDSAVMRLGLRTLLEQDDDIEVVGEAEN---------------GDTAVRC 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +       ++  +A              T +               
Sbjct: 48  ATELQPDVILLDIRMPRRDGLSVLSQLAA-----------GSTVIMTTFTDDAGAIRRAM 96

Query: 124 AGMDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                 Y    TFD   +   +         +    +  +   A               +
Sbjct: 97  DEGAAGYLVHGTFDAHALGHMIRSAKAGVMPVAPMVMSAL---AGRGHGTQIGRFPGIRR 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ R+ E +  I+ G+++ EI+  L ++  TV N+I  I       TR+ AI   ++
Sbjct: 154 NMGLSDRQAEVMDLIAAGQSNKEISKTLFLAEKTVKNHINQIFATLGVTTRAQAIVLWLQ 213


>gi|186471780|ref|YP_001863098.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184198089|gb|ACC76052.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 215

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  +   +           + +    + +++              
Sbjct: 2   IKVLLADDHAVVRDGLRQVLLHASGFEVAGEACDSATTLEMVRSVS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+R +                 L   +               
Sbjct: 48  -ANVLLLDLSIPGRNGIELIRQIKDEN--------PSLRILVLTMHAEHQYASRAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +   G  +               A               L+
Sbjct: 99  SGYLTKESASQELLKAITKIASGGVYVSLAMAERFAQNLNEPAEAM--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE +    I EG+++ +IA  L +S  TV+ + A I+ K      S  I YAVR+ +
Sbjct: 151 DRESDVFRRIVEGQSTTDIAHELCLSVKTVSTHKAHIIEKMQAANESALIRYAVRHKL 208


>gi|78223365|ref|YP_385112.1| two component LuxR family transcriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78194620|gb|ABB32387.1| two component transcriptional regulator, LuxR family [Geobacter
           metallireducens GS-15]
          Length = 210

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 33/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       +  +   +  ++ +           ++ A               +
Sbjct: 3   TRILVADDHAIFREGLKQVIGTTVDMSVVDEAVDGKELLNKIQA---------------N 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      D++     +E       L        P        +       
Sbjct: 48  DYDMVILDITMPGRNGLDVL-----TEMKSIKPKLPVLVMSMHP---EEQYALRAYKSGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFEL 186
             Y +       +   L  +    + +       +   L+ +                 L
Sbjct: 100 AGYLNKGSASNELLDALHKISMGKKYVSSALAESLVSGLSDHNQQDLLQS---------L 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + ++ I+ GKT  +IA  L +S  TV+ Y A I+RK   K  +    + + N ++
Sbjct: 151 SNREYQVMSMIASGKTVGKIATELSLSVKTVSTYRAHILRKLNMKNNAELTRFVIENKLI 210


>gi|315081981|gb|EFT53957.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
          Length = 206

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 59/235 (25%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +             G     LV+      
Sbjct: 1   MIDKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGR-----GDEVVGLVQDTYADV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +       +   +                 L    F                + 
Sbjct: 56  CLLDIEMPGLDGITVAAELRDQALW--------CRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+GRE 
Sbjct: 108 VKDTPAEDLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSGRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R   +
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|289704669|ref|ZP_06501097.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558623|gb|EFD51886.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 209

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +     + V  +      L  +            +                  
Sbjct: 3   VRVMLVDDHPVVRAGVRAVVEAHPDLTVVAEAADGAEAIGVLE-------------AGEP 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       +    A     + +  +Q         F T  + +       
Sbjct: 50  TVDVVLMDLQM----GAGMDGVTATRAVRERWPGVQVL---ILTTFDTEADILAAVNAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +       + +       +                  G    L+
Sbjct: 103 AGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATL-------------MGRMSGGSEVLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G T+   A  L IS  TV  ++  I +K     R+ A+  A R  I+
Sbjct: 150 EREIELLELIARGATNKMAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208


>gi|256421426|ref|YP_003122079.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036334|gb|ACU59878.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 207

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 63/239 (26%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       + ++      +          S    +                  
Sbjct: 2   IKVVVVEDHPIMVEGLKNILRSDAGIEVSGAYGDGKSALQALEK---------------G 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L   +      +   ++        PV H++ +         
Sbjct: 47  QPDVILMDVNLPDISGVNLCGEVKKK--YEDIKIIALSIHDEQPVIHSMLQ------NGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   +  +      +       +                        T
Sbjct: 99  SGYVLKNALGNEIIHAIYAIMDGEEYLCSSTKEALKNADMELLKAIPRI----------T 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I +G T+ +IA  L IS +TV ++  ++M K      +  +  A    ++
Sbjct: 149 RREKEILQLIGKGLTTMQIADQLFISTHTVESHRKNLMEKFGVNNTTSVVKLASEYKLL 207


>gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 225

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 65/244 (26%), Gaps = 34/244 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           +     V ++L  +       +       + +  +               L         
Sbjct: 8   SMTTPTVRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERL--------- 58

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                   +   +D ++         R +           L     +         +   
Sbjct: 59  ------RPEVVVMDLMMPVMDGITATRELRRR--------LPDTEVIALTSTLEENKVNG 104

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y         +   +         +  +    +           + +     
Sbjct: 105 AIEAGAISYMLKDASSDTLADAIHAAARGEVRLHPEAARRL----------VRDFRSPEM 154

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT +E   L  ++ G+++ +IA   G+S  TV  +++ ++ K    +R+ A  YA+
Sbjct: 155 RES-LTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYAL 213

Query: 242 RNNI 245
           +  I
Sbjct: 214 KYGI 217


>gi|297202079|ref|ZP_06919476.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297148031|gb|EDY58315.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 280

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 61/258 (23%), Gaps = 49/258 (18%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V IV+  ++    + ++ L +    +  +                    G   +   
Sbjct: 36  ATPVRIVVADDNPVVRAGLTALLSGRADITVVAEAAD---------------GREAYEAA 80

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +  +           +     L                
Sbjct: 81  SRHRPDVVLLDVRMPGVDGLSALPYL-----------VPIAPVLMLTYSGEPETVQEALR 129

Query: 125 GMDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS-------- 175
              + Y     F   ++   +         +       +                     
Sbjct: 130 RGADGYLVHGEFTADQLAAAVRDTVQGRTHLTPTAAGALLTHLRDANAHENPHVPASAER 189

Query: 176 --------------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                                 F+L+ RE E +  I+ G T+ +IA    IS  TV N+I
Sbjct: 190 FPLKGLSQLQPSVGQSSSDRSRFQLSAREAEIMDLIASGMTNQQIAAACFISEKTVKNHI 249

Query: 222 ASIMRKTATKTRSGAIAY 239
             I  K  + +RS A A 
Sbjct: 250 NRIFAKLHSTSRSEAAAK 267


>gi|229592945|ref|YP_002875064.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229364811|emb|CAY52833.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 209

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDLLVVGEASNGEQLLETLRHV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIARIRALNNPP--------AILVLSMHDEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +                       L+
Sbjct: 99  AGYATKDSDPALLLTAIRKVAAGGRYIDPDLADRMVFEVGLTDTRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHKLL 209


>gi|257057243|ref|YP_003135075.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587115|gb|ACU98248.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 216

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 11/219 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   VS    +  + E   G +    VR        LD  + +  P D +
Sbjct: 7   ADDEELVRSGLRAMVSPASDIEVVGEAADGRTAVEAVRRFHPDVALLDIRMRT--PDDGI 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R +   +       +          F              N +     +   +   +  L
Sbjct: 65  RALRAIQTLPKPPAVA-----MLTTFDIDEYVSLALRFGANGFLLKDIEPIMLVRAIRDL 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G ++          +     +  ++          L+ RE E +T I +G ++ EI 
Sbjct: 120 ARGGAVLDPGVAAR---MVNAHRDGQRASAPARELLASLSDREREVVTLIGQGLSNAEIG 176

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV  Y+++++ K     R  A   A R  +V
Sbjct: 177 GRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGLV 215


>gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 249

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 81/240 (33%), Gaps = 17/240 (7%)

Query: 24  SHLPTRSDL---LARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSI 77
           + L    D     AR++ +D        + A  E  G    +    +      +Q++  +
Sbjct: 9   ADLQGADDANRPAARLLLVDDEPGLRAAVQAYLEDEGFVVTTAVDGLDGWEKAQQQMPDL 68

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V SD          L EK +    L     +F        +         + Y    FD 
Sbjct: 69  VISDVMMPRCDGYGLLEKMRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDP 128

Query: 138 ARIRIGLMLLFPKGRIILRDRLW-----------EIGLLAAYQANMFKSYDVHWGKDFEL 186
             +   +  +  +   +L +              +I  + +       +           
Sbjct: 129 DELVARVRNVVRRQDRLLTEAARFADADVGQMAKQISEIRSMLTGSADAAASPDTPQLSF 188

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE   L  ++EG  + EIA  L  S   V  Y++ +  KT T +R+  + +A+++++V
Sbjct: 189 TPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRFALQHHLV 248


>gi|194466362|ref|ZP_03072349.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
 gi|194453398|gb|EDX42295.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri 100-23]
          Length = 217

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 74/239 (30%), Gaps = 27/239 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+++  +     S +S+L         +                    G   ++ V    
Sbjct: 3   NVLVADDHAIVRSGISYLVDLQPNFTVVDGTAS---------------GTDTYIRVEQGG 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +    P      +        +  ++    +   +           A    
Sbjct: 48  IDILIMDLSM----PPGENGLITTRRIHDKFPKVKI---IILSMHEEQEYINKAMANGAM 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            Y   +   + I   L  +    + +       I +       +  S +    K +  L+
Sbjct: 101 SYILKSSPDSEIVNALKHVINGEKYLD----ANIIVSKKDIKEINASGNTLNLKGYNGLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    I+ G ++ EI+  + IS  TV  + A+I RK     R   + YA+ ++++
Sbjct: 157 KREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHHLI 215


>gi|325000860|ref|ZP_08121972.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 222

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 22/233 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           RE+      V   P   + +A  +      +      ++TE    +H             
Sbjct: 11  REELFTVLVVDDHPLLREAIAGRLRSMGAGTVHEAA-SVTEARARAHAA----GPCDLAI 65

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      DLV  +     +           +            +        Y   
Sbjct: 66  LDLTLPDGSGLDLVSELRSLGWN---------RLVVLASSDDPYAVRSAFQAGAQAYLLK 116

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +   + +  G+  +   G          +                      EL+ REVE 
Sbjct: 117 SASPSVVTDGVKRVLDGGVYADPTVAPLLAT--------GSRVPGTDNTPRELSAREVEV 168

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A+R  ++
Sbjct: 169 LQLVADGQSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAGVI 221


>gi|313675285|ref|YP_004053281.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312941983|gb|ADR21173.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 215

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 28/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +     +      ++                   G    + +  +
Sbjct: 2   IKVLLVDDHRLIRDGIRFYLEKDGHDISIVGEAND--------------GKQALIFLEKN 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +    D +++     ++      +E +K +  ++    +   +               
Sbjct: 48  PGEV---DIMLTDISMPEMNGVELATEVNKSFPSVKI---IALTMIKDSQYVKQMLQAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   +  ++       ++             +              ++
Sbjct: 102 SGYLLKNAREKEIVDAVKTVYNGESYYAQEAT-------KAIMDFMSKKKQDSD-VVAIS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  I +  ++ EIA  L IS  TV  +  ++M KT +KT +G + YA+ N
Sbjct: 154 KREKEVLRLIIDELSNQEIADKLFISIRTVEAHKRNLMEKTGSKTLAGLVKYAINN 209


>gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 208

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
            P +I           S       +   L  +     I++ +        + +      S
Sbjct: 67  APRSIEALRVGVRAVLSPDASPDELIHVLRTVSAGAAIVMPEEARP----SLHLLPDIVS 122

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G    LT RE E +  +++GK++ EIA  + I+  TV +++  ++RK    TR+ 
Sbjct: 123 PAPATGLLATLTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLRKLGVGTRAQ 182

Query: 236 AIAYAVRNNIV 246
           A+A+A  + ++
Sbjct: 183 AVAFAYESGLI 193


>gi|271969982|ref|YP_003344178.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513157|gb|ACZ91435.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 15/218 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFL------LVRWDLFQEQKLDSIVSSDWPFD 85
           +  R++  D        +  + E       +      +   +  +  + D  +       
Sbjct: 1   MTIRVLLADDQAMIRASLRIILEDQPDITVVAEAGDGVEAIEQARRTRPDVCLVDIQMPR 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L               +          F                +         +   + 
Sbjct: 61  LDGIEVARALADAPPRVV-----MVTTFDLDEYVYGALRCGAAGFVLKDAGPILLVEAVR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +    +I       +     + A+              LT RE E +  I+ G+T+ E
Sbjct: 116 AAYSGDALISPTITLRL---LRHLADRGARAKARM-PAQPLTARETEIVQAIARGRTNQE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  L IS +TV  Y++ IM K   ++R   +A+A  +
Sbjct: 172 IADELFISLSTVKGYVSGIMAKLGVRSRVKIVAWAWES 209


>gi|239918332|ref|YP_002957890.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839539|gb|ACS31336.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 209

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +     + V  +      L  +            +                  
Sbjct: 3   VRVMLVDDHPVVRAGVRAVVEAHPDLTVVAEAADGAEAIGVLE-------------AGEP 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       +    A     + +  +Q         F T  + +       
Sbjct: 50  AVDVVLMDLQM----GAGMDGVTATRAVRERWPGVQVL---ILTTFDTEADILAAVNAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +       + +       +                  G    L+
Sbjct: 103 AGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATL-------------MGRMSGGSEVLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G T+   A  L IS  TV  ++  I +K     R+ A+  A R  I+
Sbjct: 150 EREIELLELIARGATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208


>gi|295394806|ref|ZP_06805021.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972402|gb|EFG48262.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 202

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 57/239 (23%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI +  +       +S L      +  +                    G     +   +
Sbjct: 3   INIAIADDQALVRGALSALLGLEPDITVVGEAAS---------------GTDAVDMCLNN 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +  R +     D           L    F          A   
Sbjct: 48  SVDVALFDIEMPGLNGIEATRELHDKGCD--------TKVLIVTTFGRPGYLQRALAAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    + +                      +        LT
Sbjct: 100 KGFVVKDAPAEELAEAIRKVHRGEQAVDPSLA----------------IESISLGPSPLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L     G +   IA  L +S  TV N+++S + K     RS A   A +   +
Sbjct: 144 EREREVLAVAHTGASVRTIADSLFLSEGTVRNHLSSAISKLGVDNRSTAAIEAAKRGWL 202


>gi|329936902|ref|ZP_08286581.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329303827|gb|EGG47711.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 215

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 60/232 (25%), Gaps = 21/232 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKL 74
           DE   +    L    D       L            L E  G                 +
Sbjct: 3   DEAAGNPAISLLVVDDHPVVRDGLRGMFESAPGFTVLGEAAGGVEAVERALALDPDVVLM 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D +R +             R   L    + T  + +         Y    
Sbjct: 63  DLRMPGGSGVDAIRELGRRG--------ARAKILVLTTYDTDTDTLQAIEAGATGYLLKD 114

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +        ++       +               V       L+ RE E L
Sbjct: 115 APREELFTAVRAAARGRTVLSPAVATRLV------------SAVRSPGGEPLSAREREVL 162

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G  + EIA  L IS  TV  ++  +  K   K R+ A+A A    I+
Sbjct: 163 ALVARGTPNREIARALFISEATVKTHLTHLYGKLGVKDRAAAVAAAYDRGIL 214


>gi|330812122|ref|YP_004356584.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380230|gb|AEA71580.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 209

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDLVVVGEASNGEQLLETLRHV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIPRIRALNNPP--------AILVLSMHDEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A + + +  +   GR I  D    +                       L+
Sbjct: 99  AGYATKDSDPALLLMAIRKVAAGGRYIDPDLADRMVFEVGLTDTRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHKLL 209


>gi|121605534|ref|YP_982863.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594503|gb|ABM37942.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 205

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 22/225 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       +   R++     ++         E      F   R        LD  +   
Sbjct: 3   LVDDHAVVREGYRRLLESRPDLTIVGEAATAREA-----FEQYRLLAPDVLVLDLGLPDM 57

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L+R +           ++                          Y + +     + 
Sbjct: 58  GGVELIRRLVQ-----RDAGVRILVFTM---HREPIFATQALRAGALGYVTKSSPPEVMV 109

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +  + ++I  D   ++       +              EL+ RE E L  + +G 
Sbjct: 110 GAVYQVAARRQVISPDIAPDLAFALLEPSGGAAE---------ELSPREFEILRLLLDGC 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++I   L I+  TV N    I  K   ++       A+R  ++
Sbjct: 161 SAEDIGTRLFITAKTVQNCHYQIKAKLGVRSDIELTRAAIRLGLI 205


>gi|329947955|ref|ZP_08294856.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523094|gb|EGF50195.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 242

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 16/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D    +  L+   S    +  LT      +    ++         D  + +    
Sbjct: 12  LALVDDDAMALAHLESYFSDVKDLTVLTATRSPRAVLRFLQSHQIDVLITDVHMENMDGV 71

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +  +              +     ++  + +       + +   +     I   +
Sbjct: 72  EMTREVIRTS--------PSTRVILLTTVNSDEDLLQGLGAGASGFLLKSAPAEEIIAAV 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +++       +        +   +          L+ RE + L  + EG ++ 
Sbjct: 124 RTVHSGAKVVAPTPTSRLI-------DYALASVRGADGSVHLSERERDVLHLLCEGASNR 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA +L I+  TV ++I  +  KT   +R   + +A ++  
Sbjct: 177 KIASLLAIAEATVKSHITGLFHKTGAASRLEIVVWAFKHGY 217


>gi|289665829|ref|ZP_06487410.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 199

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
            H   R  L A +            M  + E   G                +D  +    
Sbjct: 1   PHPLLRDGLSAMLAAEQD-------MRVVGEAEDGEQAVACYTRLRPDVVLMDLQMPRVD 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +          V      +    +      +         Y   +     +  
Sbjct: 54  GVEAIQRIRR--------VDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVD 105

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R  +   + E   +AA+  +              L+ RE E L  ++ G +
Sbjct: 106 TIRGVRRGQRRQVPVAVAEN--IAAHVLDDA------------LSARETEVLNLVATGCS 151

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L IS  TV  ++ +I+ K   + R+ A+  A+R  I+
Sbjct: 152 NKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRRGIL 195


>gi|196233033|ref|ZP_03131881.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196222840|gb|EDY17362.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 212

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S ++ L  + D  A +   D                        R  
Sbjct: 7   IRLLLVDDHFVVRSGLAMLLAQQDDFAVVAEADDAEQ---------------AVAHYRQH 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + ++ +                 +    +    +         
Sbjct: 52  RPDVTLMDVRMPGASGIEALQRIRGE--------FPDARVIMLTTYDLDEDVFRALEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   A +   +  +    R + +                         +   L+
Sbjct: 104 VGYLLKSVRHAELFAAVRKVHAGERCVPQSLETR------------CKNGALRSR---LS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  ++ G ++ EI   LG++  T   ++ +I+ K     R+ A+  A +  ++
Sbjct: 149 PREVETLDLLARGFSNREIGSALGVTERTAKAHVQAILVKLEAADRAEAVDAAYKRGLL 207


>gi|209883854|ref|YP_002287710.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
 gi|209872050|gb|ACI91846.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 70/220 (31%), Gaps = 28/220 (12%)

Query: 35  RMIPLDCTVSWTMRMYAL------------TEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            ++  D    +   +                   G    LL +        LD  +    
Sbjct: 8   HLVIADDHPLFRGALREAVTSVVPGTNIDEAGAFGELTALLEKESDIDLVLLDLSMPGVS 67

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            F  +     ++      V+   ++    +  ++           + +    F V  +R 
Sbjct: 68  GFSGL-IYLRAQYPAIPVVVVSASDDGETIRRSMEF-------GASGFIPKRFGVETLRE 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +         D              +         +   LT ++V  L  +SEG  
Sbjct: 120 AISKVMNGDIWTPSDV--------DLSTGVDPDMAKLRDRLITLTPQQVRVLMMLSEGLL 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 172 NKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 211


>gi|295132306|ref|YP_003582982.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980321|gb|ADF50786.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 205

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 65/238 (27%), Gaps = 36/238 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +       D ++ +                          LV  +
Sbjct: 2   IRVVVAEDHLAVADGILAYFKYHDSISIIGHAKNGEDLVK---------------LVEKN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +      D  +      +  + +             R   +   +F              
Sbjct: 47  IPDVVLTDVKMPVMDGIEAAKLIKAK--------FDRIGIIAFSMFDQDEAVDLMLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      ++ +   ++ +         +                 + +        LT
Sbjct: 99  TGYLLKNSPLSEMEKAILKVSEGNLYYDPNL-------------SLATENTPNENTGILT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            R++E L  + +GKT+ +IA  L I + TV  +  +++RK         + YA++   
Sbjct: 146 KRQIEILKLVGKGKTNQQIADALFIGKTTVETHRKNMIRKLGLHGPGELLRYALQRKY 203


>gi|24379934|ref|NP_721889.1| putative response regulator [Streptococcus mutans UA159]
 gi|290580086|ref|YP_003484478.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377915|gb|AAN59195.1|AE014986_6 putative response regulator [Streptococcus mutans UA159]
 gi|254996985|dbj|BAH87586.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 198

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 41/238 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  +            +   T              
Sbjct: 1   MKLLVAEDQSMLRDALCQLLLMEDDVEEIYQAADGQEAIELLGKQT-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +            Q    +    F          A   
Sbjct: 47  -VDVAILDIEMPIKTGLDVLEWIRQ---------HQDTKVIIVTTFKRSGYFKRALAAHV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       + +   +  +    R    + + E+                       L+
Sbjct: 97  DAYVLKDRSASELMATIYTVLSGQREYSPELVEEVTF-----------------DSNPLS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  +++G ++  IA  L +S  T+ NY+ +I  K     R+ A+  A  N  
Sbjct: 140 EREQEVLQLVAKGASNQTIAEQLFLSNGTIRNYMTAIFNKLNANNRTDAVRIARENGW 197


>gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo]
          Length = 268

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 30  QSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 89

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 90  IDPVFQEDAPYYRNDTRAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 147

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 148 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 207

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 208 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259


>gi|240170794|ref|ZP_04749453.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           kansasii ATCC 12478]
          Length = 214

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 32/241 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++V +V+  +       V    + S  +  +   D                GA+   L++
Sbjct: 5   EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADD---------------GATALELIK 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +L     LD  +       +   +   +             L                 
Sbjct: 50  TELPDVALLDYRMPGMDGAQVAAAVRSYDLP--------TRVLLISAHDESAIVYQALQQ 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +         I   ++       ++    +  +   A                   
Sbjct: 102 GAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPTAPV------ 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  +
Sbjct: 153 LSAREREVLNRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGL 212

Query: 246 V 246
           +
Sbjct: 213 L 213


>gi|153811961|ref|ZP_01964629.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174]
 gi|149831860|gb|EDM86946.1| hypothetical protein RUMOBE_02354 [Ruminococcus obeum ATCC 29174]
          Length = 206

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 76/236 (32%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +D   T+ +  +   ++ +  +                    G     L    
Sbjct: 1   MKIVIVDDDCLVTAALKTILEVNEDVQVLATGSD---------------GRDAVCLYAEY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    +    +  ++         +   L    F      +       
Sbjct: 46  KPDVLLMDIRMKNMNGLEASAEILKAD--------AKANILLLTTFLDDEYIVKALRLGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D A I   L  ++    +  ++       + +   ++ +  +       E+ 
Sbjct: 98  KGYLLK-QDYASILPALRAVYSGQTVFGQE-------IVSKIPDLIQKKENFDYSVCEIN 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E E +  ++ G ++ EIA  + +   TV NY+++I+ K   + R+    +  ++
Sbjct: 150 EKEKEIIRLVANGYSNKEIAAEMYLGEGTVRNYLSAILDKLQLRDRTQVAVFYYKH 205


>gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330]
 gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445]
 gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
 gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330]
 gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str.
           9-941]
 gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365]
 gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457]
 gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292]
 gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870]
 gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68]
 gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya]
 gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1]
 gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1]
 gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33]
 gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether]
 gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196]
 gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           M5-90]
          Length = 259

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 21  QSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 80

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 81  IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 138

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 139 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 198

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 199 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|238794052|ref|ZP_04637670.1| Response regulator uvrY [Yersinia intermedia ATCC 29909]
 gi|238726684|gb|EEQ18220.1| Response regulator uvrY [Yersinia intermedia ATCC 29909]
          Length = 206

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 16/191 (8%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G       R        +D  +      +  R +     D           +   +  
Sbjct: 22  QCGEDAVKWCRSHAVDIVLMDMNMPGIGGLEATRKILRFSPD--------TKVIMLTIHT 73

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y S       +   +  +    R I  D   ++ L          
Sbjct: 74  ENPLPAKVMQAGAGGYLSKGAAPQDVVTAIRAVHSGQRYIASDIAQQMALGQLE------ 127

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE++ +  I++G+  ++I+  L +S  TVN+Y   +  K       
Sbjct: 128 --PPVETPFSCLSERELQIMLMITKGQKVNDISEQLHLSPKTVNSYRYRMFSKLNISGDV 185

Query: 235 GAIAYAVRNNI 245
                A+R+ +
Sbjct: 186 ELTHLAIRHGL 196


>gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 254

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 66/241 (27%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +           R++     +G    +     +              +  + P D+    
Sbjct: 12  LQASQTLNGCLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT---LPENITPPA---------------GMDNRYCS 132
                 ++  V QR      P   +     +                     GM      
Sbjct: 72  CEHGYYQHDPVQQRAARRTTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVAR----IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                          +  +  +   +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHYIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|229084784|ref|ZP_04217044.1| Response regulator [Bacillus cereus Rock3-44]
 gi|228698531|gb|EEL51256.1| Response regulator [Bacillus cereus Rock3-44]
          Length = 212

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVLDTVNDGKEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------KTKPLILTTFDDDEYILEAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLL----ENKEAESKIDKSL-FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|330464915|ref|YP_004402658.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328807886|gb|AEB42058.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 221

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 71/238 (29%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            ++++  + +   + +  L +    +  +                    G S   L R  
Sbjct: 2   TSVLIVDDQDLVRAGIRTLLSADPQIDVVGEAAD---------------GRSGLRLARQY 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +A +   +    L     L    F    + I   +   
Sbjct: 47  RPDVVLMDIRMP------VLDGLAATAAIRADAGLAATRVLILTTFDDDEDIIEAVSLGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +R  ++     G ++       +      +            +   LT
Sbjct: 101 AGYLLKDTPSDELRRAVLTTAAGGNLLSPTVTRRV----MERLAAAPRPARPDPRLAVLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   L  +  G+T+DEI   L IS  T   Y++ ++ K   + R+     A R  +
Sbjct: 157 ERERAVLARVGLGETNDEIGRALFISPATARTYVSRLLAKLNARDRTALAVIAHRAGL 214


>gi|283787636|ref|YP_003367501.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282951090|emb|CBG90768.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 197

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 32/219 (14%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + +          A+++ L+  +       +     G      +     Q    D  +  
Sbjct: 5   ALIDDHLIVRSGFAQLLGLEADLQVAAEFGS-----GREALAGLPGRGVQVCICDISMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L+  +            +    +   V  +              + S       +
Sbjct: 60  ISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   G  +  D   ++                  G+   LT RE +    +++G
Sbjct: 109 IAAVHTVATGGCYLTPDIAIKLA----------------AGRQDPLTRRERQVAEKLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               EIA +LG+S  TV+ + A++M K            
Sbjct: 153 MAVKEIAAVLGLSPKTVHVHRANLMEKLGVSNDVELARR 191


>gi|239627726|ref|ZP_04670757.1| two-component protein Kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517872|gb|EEQ57738.1| two-component protein Kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 209

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 36/240 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  V+  + +     +  +  + D +                  L               
Sbjct: 2   IKAVIADDIQILRQGLKAILEQDDGIEVAGLAADGREAWQLCRKL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                K D ++             ++     +  ++         F           G  
Sbjct: 47  -----KPDVVLMDMRMPQYDGSYGITRIKADFPDIRVL---VLTTFDDRETVDAAVQGGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFE 185
           + Y     +  ++   +  +              I +         +      G   D +
Sbjct: 99  DGYILKEMEDDKVIQSVKAVCAG-----------IRVFGGSVFEGMRRQMALPGAKADLD 147

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +  +++G  + EIA  L ++  TV N I+ ++ K   K R+    +AV+NN+
Sbjct: 148 LTPREMDIMRLVAQGMDNREIAAGLFLAEGTVRNNISRLLEKLKLKDRTQLAVFAVKNNL 207


>gi|326796056|ref|YP_004313876.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326546820|gb|ADZ92040.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  + +     +  +   +  L  +            +                 + 
Sbjct: 3   KILIVDDHDLVCEGLKRVLQDAPNLVVIGVAHSGEEALEFIRE---------------EQ 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +           +        Y  ++             P          +
Sbjct: 48  PNIVLMDVHMPGIGGLGATVEITR-----RYPSIKIVALSAM---DDNPYPTKLIEAGAS 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +   +   +   +  +    R I +    +I L          S          L+ 
Sbjct: 100 GYVTKGAESLELLDAIDTVSKGERYISKSVAQKIAL-------AKTSSIDGDSPLHALSE 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++    I + K S+EIA  L +S  TV+ Y A I  K   ++       A+R NI+
Sbjct: 153 RELQVAQMIVDCKKSNEIADQLNVSPKTVSTYRARIFSKLNIESDVELARLAMRYNIL 210


>gi|161503514|ref|YP_001570626.1| hypothetical protein SARI_01590 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864861|gb|ABX21484.1| hypothetical protein SARI_01590 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 212

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +            LD I+      D++      +  + +  +          +   
Sbjct: 38  GLEVYNACCAHEPDILILDLILPGINGLDII-----PQLHQRWPAMNIL---VYTAYQQE 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   N Y   +     +   L  +    R I      E  +            
Sbjct: 90  HMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAIM---------AEL 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE + L  I EG T+  I+  L IS  TV  +  ++MRK      +  
Sbjct: 141 NADAPNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 200

Query: 237 IAYAVRNNIV 246
           +  A R  ++
Sbjct: 201 LNCARRMRLI 210


>gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 219

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 76/241 (31%), Gaps = 27/241 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++N+VL  + +     +  L +    +               +    +     H ++   
Sbjct: 5   EINLVLLDDHKVVVDGICSLLSDDPSIVVKEVFTNGKDTLQYIEQSQKNGIPIHVVVADL 64

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            +           S    D    +           ++              +        
Sbjct: 65  RMPG---------SMSGLDFTAQLRSL-----SPTVKVLILSMSIA---PEDISAAIRMG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPK-GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
            + Y S   DV  IR  ++ +         ++ L                      +  +
Sbjct: 108 VSGYLSKNQDVHDIRKAILEIMRDNRPYYSQEILQSFA---------ESVDRQPVEEIRQ 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++  T+ EIA  L IS  TV+ +  ++++K   K+  G   +A+R+ +
Sbjct: 159 LTPRELEILKLIAQEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSIVGLANFAIRHGL 218

Query: 246 V 246
           V
Sbjct: 219 V 219


>gi|256423541|ref|YP_003124194.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038449|gb|ACU61993.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 67/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I +  +       + ++   ++  A                                 
Sbjct: 2   VRIFITDDHPIVREGLKNVLNATEGFAVTGTCSTGKETLEAFEK---------------K 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L   +     D Y  V+        P+ +++           
Sbjct: 47  EPDILLLDINLPDINGVELCAAVKKKHPDVY--VIALSVHNEAPIINSILRQ------GA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   +  +   G  +       +           +       +  ++T
Sbjct: 99  SGYIQKNALSEIIVEAIQDVLKGGSYVCEQSREIL---------RRQRGKGGLTQLPKMT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   +EG T  +IA  L IS  TV ++  ++M K    + + AI  A +   +
Sbjct: 150 RREKEILKLAAEGLTIAQIAEKLFISPYTVESHRKNLMDKFEVNSVAAAIKLAGQYGFL 208


>gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 222

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++          +  +   +  L  +           R+  L               
Sbjct: 2   LKVLIATGRPLIREGLQRVLEGASGLQVVGHAAAADPLLERVRQLA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  ++ D   DLV  +    +     V+   T+   P        +       
Sbjct: 48  -PDVVLLDLGLAEDDARDLVGRL---GRAPSAPVVVGITDRADP-----QALLGLVQAGL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     + A +   +        +I  + + E+   +      +        +   L+
Sbjct: 99  GGYLLANREAAGLAEAIRACTAGIFVIDAEIMSELAHDSPLY--RYVPAPEEVERARLLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I+ GK++ ++A  L IS  TV N+++ IM+K   + R+ A+ +A+R  ++
Sbjct: 157 QRELEVLSRIARGKSTAQVARELYISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGLI 215


>gi|186474725|ref|YP_001863696.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184198684|gb|ACC76646.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 54/227 (23%), Gaps = 24/227 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +      +         + +      L          +D 
Sbjct: 7   AARLILVDDHPLVRDGLRARLEAVPGFAVVGEAGNAEQAM-----TLAAAQEPDLVLMDV 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       L                     L   +   +             Y      
Sbjct: 62  GMKGINGITLAALFHER--------FPDIRVLMLSMHDNVEYVTNAVRAGARGYLLKDSP 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +  +                                      LT RE + L  
Sbjct: 114 GAEIIRAIGAVLDGKTFFSEG-----------LGARLIQASTLRDPTERLTPRERDILDQ 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK     ++  I +AV +
Sbjct: 163 LAEGLSSKQIAQRSGLSVRTVETHRQNLKRKLEIDGQAELIKFAVEH 209


>gi|329927577|ref|ZP_08281740.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938366|gb|EGG34756.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 201

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  + +     ++ L +  D +  +   +        +                  
Sbjct: 2   IRIVLAEDQKLLRGALATLLSLEDDIEVVGQAENGEEVISMIQQY--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +  ++             +    F              
Sbjct: 47  EPDVAVLDIEMPLKTGLDIAELIQKNKS--------ACRVIILTTFARPGYFQRAMQAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  ++   R+I  +                      W     L+
Sbjct: 99  YGYLLKDTGSEELADAIRRVYDGKRVINSEL-----------------SLAVWDDPCPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +   ++G    +I   L +S  TV NY++  + K    TR  AI  A     +
Sbjct: 142 PREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKGWL 200


>gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 212

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L   S  +  +           R+ AL               
Sbjct: 2   IRVFLLDDHEVVRRGLADLLQSSGDIEVVGESGLAQEAARRIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D+ R +         + ++         +              
Sbjct: 47  RPDVAILDARLPDGNGIDVCRDVRA-----VDSSIKGL---ILTSYEDDEALFAAIMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++          +        +S      +   LT
Sbjct: 99  AGYVLKQIRGTDLVDAVRRVAAGQSLLDPA-------ITTRVLERIRSGVEQPRELKSLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R 
Sbjct: 152 EQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207


>gi|320106448|ref|YP_004182038.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319924969|gb|ADV82044.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 224

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 38/241 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ ++   +       V+    R   +  +      V                      
Sbjct: 20  SRIRVMCADDHPLILDGVARSLEREPDMLVVAEAATGVEAVETFR--------------- 64

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D++         +   +  R   +    +    +       
Sbjct: 65  LHRPDVALIDLQMPGLNGIDVI--------CQILQINPRARCIVLTTYRGDVQAARAFKA 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T     +   +  +    R +  +   E+                       
Sbjct: 117 GAVGYLLKTMLRKELAQAIRAVHGGLRYVPTEIASEL---------------TRHFSSEA 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S G ++  +A  L IS +TV  ++ +I+ K     R  A+  A+R  I
Sbjct: 162 LSARELEVLRSVSRGWSNKIVADKLAISEDTVKGHMRTILAKLGANDRLDAVMTALRRGI 221

Query: 246 V 246
           +
Sbjct: 222 L 222


>gi|16119495|ref|NP_396201.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15162039|gb|AAK90642.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 210

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 66/240 (27%), Gaps = 36/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L          +  +    + +A +                      +       
Sbjct: 5   PIRVLLVDNHPLVLDGLKAVLETYEHIAVVGTAVSA---------------MAGIDAAVA 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D +      +             L   +  +     T     
Sbjct: 50  TKPHVVLMDINMPQINGIDALELFKERQLS--------ARVLMLSMHDSREYISTSVMYG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         I   +  +   G          +              +   G+  EL
Sbjct: 102 AAGYILKDVATEEIVAAIDTVAAGGTYFSSGVRDVL-------------MESSTGRLKEL 148

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  I+ GK++ + A+ L I+  T+  +  +I RK    T +G I YA+ + ++
Sbjct: 149 TTREQDVLLLIARGKSNRDAALALDIAERTMETHRKNIKRKLDIATTAGLIRYAIDHGLI 208


>gi|296130518|ref|YP_003637768.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022333|gb|ADG75569.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 209

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 59/239 (24%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     S +  +      L  +                    G     L    
Sbjct: 3   LRVVVADDHPVVRSGIVAMLDLEPDLEVVGEAGD---------------GERAVALAHEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +           L     L    + T  + +       
Sbjct: 48  QPDVVLMDLRMPGLDGAAATARVVTE--------LPGVHVLVLTTYETDTDILRAVEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++  G+         +       +               V  G    LT
Sbjct: 100 TGYLLKDTPREQLVAGVRAAARGESALSPSIAQRLV------------RQVRGGTGERLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++  +   L I+  TV  ++     K     R+ A+  A+   I+
Sbjct: 148 PREREVLAGVARGLSNAAVGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 206


>gi|196231080|ref|ZP_03129940.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224910|gb|EDY19420.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 209

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 24/223 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D     + L  ++        + E   G       +        LD  +     
Sbjct: 7   RLMLADDHFMVRMGLATSLKLEPDFEIVAEADTGKEAISFYQHHRPDVALLDCRLPDMTG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ + +  ++             L    F+   +           Y         I   
Sbjct: 67  IEVTQALRAAD--------ATARILILSAFNGEEDVFRAVQAGAESYLLKNARRTEIVTA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +         +    +                   +  ELT RE   L  I +G ++
Sbjct: 119 IRTVHAGSPYFPPEISAILA---------------ARMRREELTPREKSVLFEIVKGSSN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L I+ + V  ++  +++K   K R+ A   A++  IV
Sbjct: 164 KEIGCCLEITESAVKIHVTHLLQKLNAKDRTHAATIAIQRGIV 206


>gi|326779283|ref|ZP_08238548.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326659616|gb|EGE44462.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 295

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + V  +      +  +                    G     LVR  
Sbjct: 68  IRVLVADDEPMIRAGVRAVLATDPGIEVVAEAAD---------------GREAVELVRAH 112

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D    +  +        L     +    F      +       
Sbjct: 113 RPHVAVLDVRMPGTNGLDAAAEIRRT--------LPATGVVMLTTFGEDDYILRALGCGA 164

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             +   + +   +  G+  +      +       +   L +     +    D    +   
Sbjct: 165 AGFLIKSGEPEELVAGVRAVADGAAYLSPKVAARVVAHLASTGAGALAGRRDAARDRVAG 224

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ +  G ++ +IA  L +   TV  +++S++ +     R+ A   A    I
Sbjct: 225 LTPREREVLSHLGGGLSNGQIARRLHLVEGTVKAHVSSVLARLGVDNRAAAAVVAHEAGI 284

Query: 246 V 246
           +
Sbjct: 285 L 285


>gi|296139697|ref|YP_003646940.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296027831|gb|ADG78601.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 229

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 62/221 (28%), Gaps = 12/221 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +  +  +  + T   G     LV          D  + +    
Sbjct: 13  VVVADDQATVRDALAAMLDLSPGVTVVGTAADGIEAVDLVLSLRPAVLLTDLRMPNLDGV 72

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +  +              +    +      +         Y +     A I   +
Sbjct: 73  GATERVVAAAPATA--------VILLTTYDDEESILRGLHAGARGYLTKNAGRAEIAAAI 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +    A                 +LT RE E L  I+EG  + 
Sbjct: 125 SAAAAGQSVLDPAVQQRL---LASITATPAPAQAAGTPPVDLTPRETEVLQLIAEGLANR 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L +S +TV  +I ++  K   + R+ A+ YA    I
Sbjct: 182 DIAARLFVSESTVKTHINNLFAKAHLRDRAHAVRYAFDTGI 222


>gi|192291795|ref|YP_001992400.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192285544|gb|ACF01925.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 235

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 59/239 (24%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +     S +  L         +                    G +        
Sbjct: 18  LRIFIADDHPVVLSGMKMLLQADPEFEVIGEAAD---------------GPTALRRAIEL 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +   +  ++++    +          +   +   V               
Sbjct: 63  QPDVAVFDLSMPGLYGMEVIQKYLAAR--------PKARVVVVSVQEDGANLRRLLKLGV 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  G+  +   G  +      +         +   +      +   L+
Sbjct: 115 AGYILKRSATDELIRGIHAVAKGGVYLDPAIAGQA---LGRVVHAAPASLGETSQIAHLS 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   S G ++  I+  L +   +V  Y A  M K     R   I +A+    +
Sbjct: 172 ARELDVLRLASVGHSNKVISAKLQVGPKSVETYKARAMEKLGFTNRVELIRFALDMGWL 230


>gi|333025269|ref|ZP_08453333.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745121|gb|EGJ75562.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 233

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 63/239 (26%), Gaps = 25/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++      V+ +   +  +  +               L              
Sbjct: 14  PVRVLLADDERLVREGVAAILASAPGIEVVGQAGDGREALAEGARL-------------- 59

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +            A         VL          F          AG 
Sbjct: 60  -RPDVALLDVRMPVLDGLGAAEEFAR--------VLPGTAVGMLTTFSEGEYVERALAGG 110

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D   +  G+  L   G  +         +L        +           L
Sbjct: 111 AAGFLLKSGDPYELIAGVRALAAGGAFLAPRVTR--HVLDGLGGRRLERAAGARRAVARL 168

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  ++ G ++  IA  LG+S  TV  Y++ ++ +     R  A   A    +
Sbjct: 169 TPREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 227


>gi|330897589|gb|EGH29008.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 222

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 58/239 (24%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L    
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCLEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPILNGLGAARILQQR--------MPGLKVVIFTMDDSTDHLEAAISAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           L 
Sbjct: 102 VGYLLKDASRDEVIDGLQRVARGEEALNSAVSARL------LRRMTERNTSGAALPETLP 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
 gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC
           27064]
          Length = 231

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 69/244 (28%), Gaps = 29/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             + Q  +        R      +      L  ++ L+  +     +       G +   
Sbjct: 16  KGVGQSTVPDGGPHLIRILLAEDMHMVRGALVALLALESDLEVVAEVER-----GDTIVS 70

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            V         +D  +           +A                L              
Sbjct: 71  KVLECRPDIAIIDVDLPGMDGLSAASLLAEQ--------TPWCRTLILTSLGRPGTLRKA 122

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A     +       AR+   +  +    R+I          LA    +           
Sbjct: 123 LAARVGGFLLKEAPPARLADAVREVSAGKRVIDP-------QLALAAFD---------NG 166

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT REVE L   ++G  + EIAV L +S  TV NY+ +I+ K   + R  AI  A  
Sbjct: 167 ENPLTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARE 226

Query: 243 NNIV 246
           +  +
Sbjct: 227 SGWL 230


>gi|222112002|ref|YP_002554266.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|221731446|gb|ACM34266.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 210

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +S  + +  + E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRAGLRQFLSEHVDLRVVGEASNGREAIDLVRVHEIDVLVMDLSMPGQSGLDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        I       + Y +   +   I   +  +
Sbjct: 67  AMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECEPKEIVEAIRTI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +       +                      +L+ RE +    +++G+T+ +IA
Sbjct: 119 ALGRRYLTPSVADLLAQQLNR--------KDDAPPHEQLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 171 KSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNKLI 209


>gi|116330476|ref|YP_800194.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124165|gb|ABJ75436.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 233

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 11/178 (6%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + ++ +     +  Y +          VF    + +    G  +
Sbjct: 60  PDIVILDIGLPGKNGLECLKELKEKTPNTKYVIF--------TVFEDEEKIVEAIQGGVS 111

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y             L ++   G  +      +   +        ++ +        LT 
Sbjct: 112 GYLLKDTPPELFLAELKVIILGGASLTPRIADK---IIREFTKKEENQNPPIQNTLGLTK 168

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R+++ L +++ G T  +IA  L IS +TV+ +I  I +K    ++S AI    R  I+
Sbjct: 169 RQLQILNFVALGMTVADIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRMGII 226


>gi|116328918|ref|YP_798638.1| receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116121662|gb|ABJ79705.1| Receiver component of a two-component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 233

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 11/178 (6%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + ++ +     +  Y +          VF    + +    G  +
Sbjct: 60  PDIVILDIGLPGKNGLECLKELKEKTPNTKYVIF--------TVFEDEEKIVEAIQGGVS 111

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y             L ++   G  +      +   +        ++ +        LT 
Sbjct: 112 GYLLKDTPPELFLAELKVIILGGASLTPRIADK---IIREFTKKEENQNPPIQNTLGLTK 168

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R+++ L +++ G T  +IA  L IS +TV+ +I  I +K    ++S AI    R  I+
Sbjct: 169 RQLQILNFVALGMTVADIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRMGII 226


>gi|258654190|ref|YP_003203346.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557415|gb|ACV80357.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 218

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 18/233 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R D  R + V         +  ++     +             G     +VR       
Sbjct: 3   ARPDRIRVALVDDQALFRAGIRMVVDSQPDLQVVGEA-----ADGRQGVDMVRASRPDVV 57

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +           +                 +    F              + +  
Sbjct: 58  LMDIRMPVLDGLAATAELLADPDPP--------RVVMLTTFDLDEAAARAIRQGASGFLL 109

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              D   +   +  +     +I      ++     +      +         ELT RE E
Sbjct: 110 KDADPEFLLAAIRTVHAGSAVIAAAATRDL-----FSRFAASAPAPVPAAFAELTQRERE 164

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
                + G ++ EIA    +S  TV  +I+ I+ K A + R   + +A  + +
Sbjct: 165 IFALAARGLSNAEIAAREFLSEATVKTHISRILGKLALRDRVQLVVFAYEHGL 217


>gi|222085009|ref|YP_002543538.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722457|gb|ACM25613.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 69/243 (28%), Gaps = 35/243 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             I +++++L          +  +    D +  +                   +G     
Sbjct: 1   MTIDRISVLLIDNHPVVLDGLKAVLETFDHIEVVGTAS------------LAQIGLE--- 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           + R    Q   +D  +      D +              L     +   +  +     + 
Sbjct: 46  IARQRRPQVTLMDINMPKLSGIDAIELFRRE--------LPDTRIVMLSMHDSREYISSS 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +   G         +I +            D    +
Sbjct: 98  IMHGAVGYILKDVSTDEVVCAIETVASGGTYFSSGV-RDILM-----------ADEAGME 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE   L  I  G+++ EIA  LGI+  T   +  ++ RK    T +G I YA+ 
Sbjct: 146 ASPLTPREHHILGLIVTGRSNREIAEELGITPATAETHRKNLKRKLGIATTAGLIRYALD 205

Query: 243 NNI 245
           + I
Sbjct: 206 HGI 208


>gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 216

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                +  + ++  GL  +      + R     +  L  Y         +    + ELT 
Sbjct: 104 GIFGPSDSMDKLCQGLTAIVSGDNWLPR---RLLDQLLTYYKGKELQSMIEPATEVELTR 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A  +A RN
Sbjct: 161 REIQVLKMLKEGGSNIEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATRWAKRN 215


>gi|39936078|ref|NP_948354.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39649932|emb|CAE28455.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 235

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 59/239 (24%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +     S +  L         +                    G +        
Sbjct: 18  LRIFIADDHPVVLSGMKMLLQADPEFEVIGEAAD---------------GPTALRRAIEL 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +   +  ++++    +          +   +   V               
Sbjct: 63  QPDVAVFDLSMPGLYGMEVIQKYLAAR--------PKARVVVVSVQEDGANLRRLLKLGV 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  G+  +   G  +      +         +   +      +   L+
Sbjct: 115 AGYILKRSATDELIRGVHAVAKGGVYLDPAIAGQA---LGRVVHAAPASLGETSQIAHLS 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   S G ++  I+  L +   +V  Y A  M K     R   I +A+    +
Sbjct: 172 ARELDVLRLASVGHSNKVISAKLQVGPKSVETYKARAMEKLGFTNRVELIRFALDMGWL 230


>gi|84684208|ref|ZP_01012110.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667961|gb|EAQ14429.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 15/222 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L        R+   +  +     +        A+  + +  DL +   +D  +     
Sbjct: 3   RALILEDVQETRIWLGEIALRAFPDLTITEAATIAAAHVALDRDLPEIALIDLGLPDGSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +++R +          V          +       ++  +   + Y        ++   
Sbjct: 63  LEILRKLKQKSPTSIAVV--------TTIMGDDVSVVSALSAGADGYLQKDQTQDQMVAQ 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +      +       I          F         D +LT RE + L  IS G  +
Sbjct: 115 LRQISHGIPALSPAVARRI-------MGHFSRTGPVANDDGKLTDRETDVLALISRGLRN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E+A  LG++ +TV  YI +I RK    +R+ A  +A R  +
Sbjct: 168 AEVARELGLAESTVAGYIKTIYRKLGISSRAEAAWHATRLGL 209


>gi|209517666|ref|ZP_03266503.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501841|gb|EEA01860.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 210

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++ T  +    E   GA     +R        LD  +     
Sbjct: 3   RILIADDHAIVRGGLRQIIATTHDIVVAAEAAQGAEVLDKLRSGAVDLLLLDMTMPGISG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L+R +                 L   +                 Y +   D   +   
Sbjct: 63  VALIRRVRAE--------YPSLPVLVLSIHDEAQVASRALRAGATGYLTKDSDPEVLLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   GR I         L+ A   +  +           L+ RE + L  ++ G++ 
Sbjct: 115 IRKIADGGRFIDP------KLVDALVFDAPRGDVPPHE---VLSDREFQVLQMLAAGRSI 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA    +S  T++ +   +M+K      +  I YA+R+ ++
Sbjct: 166 NEIAQACSLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGMI 208


>gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   EI     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 220

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 80/214 (37%), Gaps = 8/214 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV---RWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++ +D      + +    E VG +        +     +Q    ++ +D     +    L
Sbjct: 5   VLIVDDEPGIRLAVTDYLEAVGYTVISAATGKQAWQLVQQYRPHLLVTDIRMPQMDGYEL 64

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +  +     +    ++        E I       + Y +  F++  +   +  L  +  
Sbjct: 65  VKLVRQQPAFRLLPVIYLTECSQTQERIRGYKLGCDAYLAKPFNLEELAAVIRNLLDRV- 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              +    EI  ++    +             +LT RE + L  + EG ++ +I   L +
Sbjct: 124 ---QIVQTEIQAVSQATPSREPVDTALIN-ALDLTQREQQVLRLLMEGLSNAQIGEQLHL 179

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  Y++ +++KT T  R+  + +A+ +N++
Sbjct: 180 SSRTVEKYVSKLLQKTETSNRAEIVRFAMEHNLL 213


>gi|115376214|ref|ZP_01463456.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366787|gb|EAU65780.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 202

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 64/203 (31%), Gaps = 33/203 (16%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D+ R +  +       +          +F    + +       +
Sbjct: 6   PDVILLDLGLPRMSGIDVTREVKATHPKVEILIF--------TIFDEEDKVLEAVKAGAS 57

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----------------LLAAYQAN 171
            Y      V +I   +  +   G +I  +    +                    A     
Sbjct: 58  GYLLKGAPVDKIIEAIKEVRAGGTVIQPNLARRLLRHFRVDPDSGPVPTEPKPAAPETGP 117

Query: 172 MFKSYDVHWGKDFE--------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
              +  V  G+D          L+ RE E L  I++G ++ E A +L +S+ T+  ++  
Sbjct: 118 AASAGPVPSGEDTPDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEH 177

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I RK     R  A+   +R  ++
Sbjct: 178 IYRKLEVTNRVEAVTEGIRKGLI 200


>gi|15893467|ref|NP_346816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023003|gb|AAK78156.1|AE007530_7 Response regulator, CheY-like receiver domain and HTH DNA-binding
           domain [Clostridium acetobutylicum ATCC 824]
 gi|325507583|gb|ADZ19219.1| Response regulator, CheY-like receiver domain protein and HTH
           DNA-binding domain protein [Clostridium acetobutylicum
           EA 2018]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 15/218 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   GA    L+         +D  +     
Sbjct: 3   DVIIVDDQEIVREGLKMILGLNNEFNVIGEASNGAELLTLLEHQSPNVILMDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +  +  D           +    F+             + Y         I   
Sbjct: 63  IEATRLVKENYPD--------LKVIILTTFNEDEFIFDVLKNGADGYVLKDAGSKEIFNS 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
           +        ++         L      N          K+    LT RE++    + +GK
Sbjct: 115 IKAACEGSVLLNPQVT----LKLVNALNTLDKKKPLQEKNLLHLLTPREMDVANHVLKGK 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++  IA  L ++  T+ NY++ I+ K     RS  I Y
Sbjct: 171 SNRAIAEALFLTEGTIKNYVSKILEKLELGNRSELILY 208


>gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 92/253 (36%), Gaps = 32/253 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWT---------------MRMYALTEYV 56
           ++  ++ RT  V+ + +RSDL  R+I +                       R+    E  
Sbjct: 9   MSSAEQLRTVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGLPAKQRLVCELENW 68

Query: 57  GASHFLL--VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G+S+        D + +  LD I  S  P         +               F P   
Sbjct: 69  GSSNAGFGKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPAD---------FSPFMT 119

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            L + I P +G+          +  +  G +L          D + E+     +      
Sbjct: 120 RLQDGILPFSGLA-----FPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLL 174

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           S D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R
Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 235 IQAIAKAIRLGYI 247


>gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           V+N  D  R   V+ + +RSDL  R+I           M  L +  G + + +    L  
Sbjct: 8   VMNGADPLRMVRVNRISSRSDLFPRLI----------AMQKLADAQGFAIYRVSGSGLPA 57

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------ 124
           +Q+L   +  +W                  +L    +   P+      +   P       
Sbjct: 58  KQRLVCEL-ENWGSSNAGFGKAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAP 116

Query: 125 ---GMDNRYC-----SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               + +        +    +  +  G +L          D + E+     +      S 
Sbjct: 117 FMTRLRDGILPFSGLAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSL 176

Query: 177 DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  
Sbjct: 177 DERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQ 236

Query: 236 AIAYAVRNNIV 246
           AIA A+R   +
Sbjct: 237 AIAKAIRLGYI 247


>gi|121606652|ref|YP_983981.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595621|gb|ABM39060.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 232

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 70/251 (27%), Gaps = 36/251 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L ++ +    +            +                  
Sbjct: 4   IRLLVVDDHNLFRRGLIALLSQDERFKVVGEAGDIGEALRCVER---------------S 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D +  +  +        ++        +     + +       
Sbjct: 49  RPDLVLLDNHLPGVLGVDGIATLKAA-----APGIRILM---LTMSENENDLVAALQAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
           + Y   T ++  +   ++ +     ++  +   ++      +                  
Sbjct: 101 DGYLLKTVELDHLSEYIIQVLAGESVVSPEMTTKLVTAFRGKPAPAALPAPAIPGAAPEA 160

Query: 186 -----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE + L  I+ G ++  IA  L I+  TV  ++  I+RK    +R 
Sbjct: 161 AAPLEGPGAGLLSARERDVLGLIALGDSNKLIARKLDIAETTVKIHVQHILRKLQLTSRV 220

Query: 235 GAIAYAVRNNI 245
            A  YA    +
Sbjct: 221 QAAVYAANREL 231


>gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 26/251 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
            +N  D  R   V+ + +RSDL  R+I           M  L +  G + + +    +  
Sbjct: 8   AMNGADPLRMVRVNRISSRSDLFPRLI----------AMQKLADAQGFAIYRVSGSGMPA 57

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------ 124
           +Q+L   +  +W    V             +L    +   P+      +   P       
Sbjct: 58  KQRLVCEL-ENWGLSNVGFGKAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFSP 116

Query: 125 ---GMDNRYC-----SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               + +        +    +  +  G +L          D + E+     +      S 
Sbjct: 117 FMTRLKDGILPFSGLAFPVRLGAVGNGFILFTGDDIDPSSDTIVELHGRCCHVMMDLLSL 176

Query: 177 DVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  
Sbjct: 177 DERRSAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQ 236

Query: 236 AIAYAVRNNIV 246
           AIA A+R   +
Sbjct: 237 AIAKAIRLGYI 247


>gi|212710861|ref|ZP_03318989.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM
           30120]
 gi|212686558|gb|EEB46086.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 24/219 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                +   P     L+ ++        T  +    E +      +          +D+I
Sbjct: 4   HTVMIIDEHPIFRFGLSHLLESKAEFKITAEVSNSKEALN-----IATTKQPNMILIDTI 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +  F+ +R +     + Y  VL               +           Y     ++
Sbjct: 59  LQGNKTFETIRLLRKHCINSYLLVL--------SFSTMKTDIYAAIDAGAQGYLLKNSEL 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L        +                     +          LT RE E L  +
Sbjct: 111 DMLLNSLKKAMEGHHVFSE-----------KVYQHLITRHQTKDPLSTLTRRECEILHEM 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + G  + EI+ +L IS  TV  +I ++++K   ++R  A
Sbjct: 160 AAGLKNKEISQLLFISEETVKVHIRNVLKKLRVRSRLEA 198


>gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 225

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +       T   G     ++  D+      D ++     
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGY-EVNTAENGREALEILEQDIPDMIICDVMMPEMDG 78

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +  V  +  +E+  +  VL    +          + +       + Y    F+   +   
Sbjct: 79  YTFVEQVRQNERTGWIPVLFLSAKGQSA------DRVKGLNKGADVYMVKPFEPEELVAQ 132

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                                 +    D +LT  E++ + +++ G  +
Sbjct: 133 V----------ESSLKQTTRWKEHQAKGGENGSRIQVPFDVQLTPTELKVVQFVARGLAN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EIA  L +S+ TV +++++++ KT    R+    +A+ N
Sbjct: 183 REIAEELNVSQRTVESHVSNMLGKTNLHNRTELARWAIEN 222


>gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 217

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 66/217 (30%), Gaps = 17/217 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           + T  D +     L   +  +  +  + E   GA      +        LD  +      
Sbjct: 6   VLTVDDNIVVRAGLVALLEASDDIQVVGEASDGAEAVTKAQELRPDVVLLDVRMPVRDGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL-TFDVARIRIG 143
            +V  +A                +            T      + Y     F +  +   
Sbjct: 66  SVVEELAEF-----------TKVVMLTHTEDPQVIQTSLRRGASGYLVHGNFTLDELNRA 114

Query: 144 LM-LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           L  ++   G  +       +    +       +          LT RE E L   + G +
Sbjct: 115 LREVVHGTGSPLSPVAATAL---VSSLRAAPPTPVPVAPAALGLTEREAEVLEAAARGLS 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + EIA  L +S  TV N+I  I RK   +TR+ AIA 
Sbjct: 172 NAEIAKELFLSEKTVKNHINRIFRKLGVRTRAAAIAR 208


>gi|325068174|ref|ZP_08126847.1| Regulatory protein, LuxR:Response regulator receiver [Actinomyces
           oris K20]
          Length = 237

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 68/240 (28%), Gaps = 25/240 (10%)

Query: 8   VNIVLNREDEQRTSFV-SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + +++  +     S V S L   +  L  +   D        ++AL              
Sbjct: 22  LRVLVVDDHALVRSGVRSELTAHAPDLDVIAEADDVEGAIAAVHAL-------------- 67

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +           +A          +     L   V     + +      
Sbjct: 68  -RPDVVLLDVHLPGGNGGGGAEVVASCH------DVPETRFLALSVSDASDDVVGVIRAG 120

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +       +   +  +              +       A      D    +   L
Sbjct: 121 ARGYVTKAISTEDLAQAVRRVAAGDAAFSPRLAGFVLDAFGAGAGEVAVADTELDR---L 177

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E +  I+ G T  E A  L IS  TV  ++++++RK     R+    +AV   IV
Sbjct: 178 SAREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVARRIV 237


>gi|325066221|ref|ZP_08124894.1| response regulator receiver protein [Actinomyces oris K20]
          Length = 241

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 16/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALT-EYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D    +  L+   S       LT      +    V+         D  +      
Sbjct: 12  LALVDDDAMALAHLESYFSDVEDFTILTASRSPHAVLRFVQSHQVDVLITDVHMEHMDGV 71

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +                 +      T  + +       + +   +     I   +
Sbjct: 72  EMTREVLRLS--------PSTRVILLTTVDTDEDLLQGLGAGASGFLLKSAPAEEIIAAV 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +++       +        +   +          L+ RE + L  + EG ++ 
Sbjct: 124 RTVHSGAKVVAPTPTTRLI-------DYALASVRGADGSVHLSQRERDVLRLLCEGASNR 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA +L I+  TV ++I  +  KT T +R   + +A ++  
Sbjct: 177 KIASLLAIAEATVKSHITGLFHKTGTVSRLEIVVWAFKHGY 217


>gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 254

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALQTLDSCLDRVFRDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   + + P                   GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|290961885|ref|YP_003493067.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260651411|emb|CBG74533.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 223

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 71/235 (30%), Gaps = 14/235 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQ 70
           +NR  E        +    D  +    L   +     +  +     G     LV      
Sbjct: 1   MNRPRETGRPL--RVVVADDQASVREGLSLMLDLLPDIDVVGSAADGRQVLDLVAELSPD 58

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      +  R +                 +    +      +         Y
Sbjct: 59  AVLLDLHMPVMDGIEATRRLTAEH--------PEVAIVVLTTYADDRSVLDALRAGARSY 110

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +   D   I   L        ++       +   A+  A   +           LT RE
Sbjct: 111 LTKDADRMHIAATLHSAAAGLSVLHPQVQATLLAAASGTAVSDRPARKLPD---GLTRRE 167

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E LT I++G  + EIA  L +S NTV  +I  +  KT ++ R+ A  YA R+ +
Sbjct: 168 AEILTLIAQGLNNAEIADRLFLSGNTVKTHINRVFAKTRSRDRAAATLYARRHGL 222


>gi|229542357|ref|ZP_04431417.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229326777|gb|EEN92452.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 200

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 26/203 (12%)

Query: 45  WTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
               M  + + V G      +         +D  +      D+   +A            
Sbjct: 23  MEEDMEVIGQAVNGREALEAILKLKPDVCLMDIEMPVLSGLDVAGELAKKN--------A 74

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
               +    F              + Y     ++  +   +       R+   + +++  
Sbjct: 75  LTKVIILTTFARPGYFERAVKSGVHGYLLKDGEIRELADAIRKCVAGKRVFSPELMFDA- 133

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                             ++  LT RE + L   + GKT+  I   L +S  TV NYI+ 
Sbjct: 134 ----------------IREENPLTEREQQILRLAALGKTTKAITEELYLSSGTVRNYISD 177

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K     R+ A + A     +
Sbjct: 178 IIHKLGANNRTEAASIAEEKGWI 200


>gi|6594287|dbj|BAA88407.1| chiR [Streptomyces thermoviolaceus]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 56/226 (24%), Gaps = 16/226 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 2   IRVLVAEDQSAVRAGLVLILRSAPGIEVAGEAE-----DGQRAVDLARDLRPDVVLMDVR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +   +             L    F                +   + + 
Sbjct: 57  MPRLDGVSATRQIVAEQLAD---------VLVLTTFDFDAYVFGALRAGAAGFLLKSAEA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+         L+A + A      D    +       E E L+ +
Sbjct: 108 DDLIDAVRTVARGEGIVAPAVTR--ALIAEFAAASGPGGDSGSCRSGHAHPAEREVLSCL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EG ++  IA  L ++  TV  +++ ++ K     R  A   A   
Sbjct: 166 GEGLSNAGIAEQLDMAEGTVKTHVSRLLGKLGLPHRVQAAVLAREL 211


>gi|293189077|ref|ZP_06607804.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
 gi|292821991|gb|EFF80923.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           odontolyticus F0309]
          Length = 216

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 27/229 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGAS------------HFLLVRWDLFQEQKLDSIVS 79
           +  R++ +D        + A  E  GA                  R        LD  + 
Sbjct: 1   MTIRILVIDDHPMVRAGVRAELENSGADLEVVGDASDVEGAIAACRALTPDVALLDVHLP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                        +E       ++    L   V     + +         Y + +     
Sbjct: 61  G------GNGGGGAEVASTCRDIEGLHFLALSVSDAAEDVVQVIRAGARGYVTKSIATPD 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWGKDFELTGREVECLTWI 197
           +   +  +                 LA +  + F      +   +   L+ RE E +  I
Sbjct: 115 LVEAIGRVAAGDAAFSPR-------LAGFVLDAFGTGEVSITDTELDLLSAREQEVMRLI 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T  E+A  L IS  TV  +++S++RK     R+    +A++ +IV
Sbjct: 168 ARGYTYKEVAHDLFISIKTVETHVSSVLRKLQLSNRNELTRWAMQRHIV 216


>gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 70/220 (31%), Gaps = 17/220 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D    ++ +   +        +T   G     ++   +      D ++       
Sbjct: 14  LLLVDDDPNLVLLVKDYLELQGY-QVVTASHGREALRILEQGIPNMIICDVMMPEMDG-- 70

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                   +  +     Q    LF      + + +       + Y    F+   +     
Sbjct: 71  ----YTFVKSVRDNPRTQWIPVLFLSAKGQIQDRVIGLNTGADVYMVKPFEPDELIA--- 123

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   I         ++      +  +       D  LT  E++ +  +++G  + +
Sbjct: 124 -------QIEASLKQAERMIQHQPEAITSNLSAQVPLDVTLTATELKVVQLVAKGMANQK 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +S+ TV +++++++ KT  K R+    +A+   +
Sbjct: 177 IAEELHVSQRTVESHVSNMLGKTGLKNRTELARWAIERRL 216


>gi|331697666|ref|YP_004333905.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952355|gb|AEA26052.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 220

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 64/233 (27%), Gaps = 31/233 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E     V+HL      +  +           R+ A                
Sbjct: 3   ISVFLVDDHEIVRRGVAHLLDAEPDMDVVGEAASATEALARIPAA--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       + R +                      +              
Sbjct: 48  HPDVAILDVRLPDGEGISVCREVRS----MLDPPPACLM---LTSYSDDQALFGAIVAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +      G +I  +        AA      ++      +   L+
Sbjct: 101 AGYLLKDVAGTNLVGAVRTAAAGGSLIDPET-------AARALERLRT--PEDPRYESLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +E   L  I+ G T+ +I   L ++  TV NY++S++ K     R+ A  YA
Sbjct: 152 PQERRILDLIATGLTNRQIGAELFLAEKTVKNYVSSLLHKLGFARRTEAAVYA 204


>gi|317405260|gb|EFV85592.1| LuxR family Two component transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 210

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 66/216 (30%), Gaps = 16/216 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-------SIVSSDWPFDLVRCMA 91
           ++       R+  L   +G     L+      E +           +      D      
Sbjct: 2   VEDEPLVCRRLERLLGQLGYPADALLFAASLAEARRRAADESVALALVDLGLPDGNGIDL 61

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           ++E       L            +  + I          Y     D   + + L  +   
Sbjct: 62  IAELRAADPALAILVISA----WSTEDAILAALRAGATGYVLKERDDLEVLLSLRSVLRG 117

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  I       I        +   + D        L+ RE + L  ++EG  + EIA  L
Sbjct: 118 GAPIDPFVARRIIEEMRPAPSQPATADAGE----TLSPREGQILRLVAEGLGNREIAEQL 173

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +SR TV  +I  I RK A  +R+ AI  A    ++
Sbjct: 174 HLSRYTVECHIKHIYRKLAVSSRTRAIHTARSRGLL 209


>gi|253989299|ref|YP_003040655.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780749|emb|CAQ83911.1| nitrate/nitrite response regulator protein narp [Photorhabdus
           asymbiotica]
          Length = 211

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   V     +    E   G     +          +D  ++     
Sbjct: 6   VMIVDDHPLIRHGLKQIVELDRALTVTAEADNGEEAINIACKLKPDVIMIDLNMNGLSGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D ++ +     +           L   V     +         N Y     D+  +   +
Sbjct: 66  DTIKSIRRKGIN--------SYVLVLSVSDDRNDVYAAIDAGANGYLLKDSDLDSLLSSI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +                     +   H     ELT RE++ L  +S G T+ 
Sbjct: 118 RHAARGQTVFSE-----------KIYQHLANRHKHVDPLSELTKRELDVLKEVSSGMTNK 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E+A +L IS  TV  +I ++++K   ++R  A    +++
Sbjct: 167 EVADVLFISEETVKVHIRNLLKKLNVRSRLAATIMYLQH 205


>gi|167622115|ref|YP_001672409.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167352137|gb|ABZ74750.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D  A    L   +S    +  + +   G     L          LD  +   
Sbjct: 3   IAKILLVDDHPALRQGLAQLMSLEESLDVVAQASSGEEAISLAVQYEPDIILLDLNMRGL 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +  ++         +   +   V     + +       + Y     +   + 
Sbjct: 63  SGIDTLISLKNAQV--------KSKVIIFTVSDNESDVVQAIKFNTDGYLLKDSEPEELI 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + L      +I       +           +S      +  ELT RE++ +  I+ GK
Sbjct: 115 EKIHLALQGEFVISSPLTQILA-------QSLRSGGKKVSQLEELTQRELQIVKLIASGK 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  LGI+ +TV  ++ ++++K   K+R   + +AV N I
Sbjct: 168 SNKEIANKLGITDSTVKVHVKNLLKKLTLKSRVEVVLWAVENKI 211


>gi|146309197|ref|YP_001189662.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145577398|gb|ABP86930.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 220

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 64/241 (26%), Gaps = 30/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  + E   +  + +       + +               L             
Sbjct: 3   EPIRLLLADDHEVTRAGFAAMLADCPQFSIVGQAVDGRQALELCQRL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +         R +   +       ++         + +          
Sbjct: 50  --NPDIAILDIRMPQLNGLATARLLREQQ-----PSIKVLLFTM---YDSPDHLEAAVNA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +  GL  +      +        G+++A         +        
Sbjct: 100 GAVGYLLKDASRQEVIDGLRQVAAGQCALN-------GMVSAQLLRRVVQRNQGGAPGSA 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  I+ G T+ EI   LGI+  T   ++  ++ K     R+ A    +   +
Sbjct: 153 LTPREHQVLELIAAGFTNREIGEELGIATGTAKAHVERVIGKLGVADRTQAAVQGIALGL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|37526610|ref|NP_929954.1| nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786042|emb|CAE15094.1| Nitrate/nitrite response regulator protein NarP [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 211

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   V     +    E   G     +          +D  ++     
Sbjct: 6   VMIVDDHPLIRHGLKQIVELDRALTVTAEADNGEEAINIACKLKPDVIMIDLNMNGLSGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D ++ +     +           L   V     +         N Y     D+  +   +
Sbjct: 66  DTIKSIRRKGIN--------SYVLVLSVSDDRNDVYAAIDAGANGYLLKDSDLDSLLSSI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +                     +   H     ELT RE++ L  +S G T+ 
Sbjct: 118 RHAARGQTVFSE-----------KIYQHLANRHKHVDPLSELTKRELDVLKEVSSGMTNK 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E+A +L IS  TV  +I ++++K   ++R  A    +++
Sbjct: 167 EVADVLFISEETVKVHIRNLLKKLNVRSRLAATIMYLQH 205


>gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 213

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 76/219 (34%), Gaps = 17/219 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           HL    D    ++ +   + +       T   G     L+   +      D ++     +
Sbjct: 9   HLLLVDDDPNLLLLVKDYLEYQGY-QVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGY 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +  +    +  V+    +            +       + Y +  F+   +   +
Sbjct: 68  AFIEQVRQNPDISWIPVMFLSAKGQS------HNRVKGLNVGADIYMAKPFEPEELAAQV 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                +   +L+     +   A           V   +D ELT  E + +  +++G  + 
Sbjct: 122 QSCLRQADRLLQHNNHPLEDNAR----------VQVARDVELTPTETKVIQLVAQGLANR 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  L +S+ TV +++++++ KT    R+    +A++ 
Sbjct: 172 EIADHLKVSQRTVESHVSNMLNKTGLHNRTELARWAIQK 210


>gi|307730304|ref|YP_003907528.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307584839|gb|ADN58237.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 292

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 31/235 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D +R   +  L  + + LAR             +                      Q  D
Sbjct: 9   DAERRDGLKALLRQINRLARFNEAQDWRQVERGLKR--------------------QWPD 48

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V      D +    +     +Y  L+           +                +   
Sbjct: 49  LLVID--WQDWMSVADVRHLLSHYPDLRIA---VLTDRISPEVVGELMDEGVRGVVARET 103

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREV 191
           D   I     ++   G  +    L     L    A    +              L+ R+ 
Sbjct: 104 DPCLIVRAFEMVLLGGHYVPSGALPLNPPLPADTAIRPFDDKNPPPRRARLSNGLSPRQE 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 164 QIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|271967578|ref|YP_003341774.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510753|gb|ACZ89031.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 60/224 (26%), Gaps = 20/224 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            V+ +    D           +     M  + E   G +     R         D  +  
Sbjct: 1   MVTRILIADDQEGIRSAFRMILDAQPDMTVVAEASDGRAAIDTARTVQPDVVLADIRMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++ R +A +                   F                +         +
Sbjct: 61  ADGIEVTRALAGTGIHVV----------IVTTFGLDEYVHAALHHGAAGFVLKRSGPTLL 110

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +I       +           +           LT RE + +  ++ G
Sbjct: 111 IEAIRAAMNGDMLISPQLTVRLLR---------RRGLPQESSSVVLTEREDQIVAMVAHG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            T+ EIA  L +S  TV N+IAS+  KT T+ R    A+A    
Sbjct: 162 MTNAEIAAELFLSPGTVKNHIASVQNKTGTRNRVAIAAWAWATG 205


>gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 64/224 (28%), Gaps = 22/224 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS-DW 82
            L    D       L   +S    +  + E   G     +          +D  +     
Sbjct: 11  RLLLCDDHAVVRAGLRALLSSADGIDVVGEAATGEEALAMAAHLNPDVVLMDLQLEGGMD 70

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +    +       + P  L   +F T  +           Y         +  
Sbjct: 71  GVTATRRLTARGE-------RGPRVLVLTMFDTDADITRAVEAGAIGYLLKAEQPEELFS 123

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +          +A       +S          L+ RE E L  ++ G  
Sbjct: 124 AIRDAASGRGALS-------APVADRLLTRLRSPRPA------LSAREHEILAQLARGLG 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  ++  I  K   +TR+GA+A A    ++
Sbjct: 171 NREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLL 214


>gi|121606967|ref|YP_984296.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595936|gb|ABM39375.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 246

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 71/239 (29%), Gaps = 44/239 (18%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           A +  +       +   A +   G       R        +D  +      D++R  A  
Sbjct: 24  ALIAAIARAPDIRLAALAGSRAQGLQAL---RGPPADVLLVDLGLPDGSGIDVIR--AAH 78

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                  V+          F      +       + Y         +   +  L   G  
Sbjct: 79  SLWPGCAVM------VSTTFGDEAHVLQSIEAGASGYLLKDSAPEDMLDEIRTLHQGGSP 132

Query: 154 ILRDRLWEIGLLAAYQANMFKS--------------------------YDVHWGKDFELT 187
           I         ++A    N F+                                 +   L+
Sbjct: 133 ISP-------MIARQILNRFRDRPAMPAPAAASASAFAQAQLCAPGLLPGPGVPEQAMLS 185

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G T+DEIA +L +S +TV  Y+  I  K   ++++ AI  A +  I+
Sbjct: 186 SREMEVLQLITRGFTADEIARLLQVSSHTVQTYVRRIYSKLKVRSKAEAIYEARQQGIL 244


>gi|297190998|ref|ZP_06908396.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150714|gb|EDY65376.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 226

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D    + ++ +   +  +  +            +  L               
Sbjct: 6   IRLIVVDDDPLVRAGLALMLGGAGDIEIVGEGADGSEVAELVERLG-------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 +    FH   + +       
Sbjct: 52  -PDVVLMDIRMPVMDGLAATERLRRRPHAPE--------VVVLTTFHADEQVLRAMRAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A I   +  +     ++      ++ +     +           +   L 
Sbjct: 103 SGFVLKDTPPAEIVAAVRRVAAGDPVLSPAVTRQL-MTHVAGSGADTRRAAALRRLEPLA 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE E    +  G ++ EIA  L +S  TV  +++ I+ K     R      A    ++
Sbjct: 162 GREREVALAVGRGSSNAEIAAALYMSVATVKTHVSRILAKLDLNNRVQIALLAHDAGLL 220


>gi|87119848|ref|ZP_01075744.1| two-component system regulatory protein [Marinomonas sp. MED121]
 gi|86164550|gb|EAQ65819.1| two-component system regulatory protein [Marinomonas sp. MED121]
          Length = 209

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L   +  +  +  LD  ++    +                  
Sbjct: 3   IKLLLVDDQNLIRMGIASLLGLTGKVEVVAQLDNGLNVIESIKRF--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  M                 +    F      +       
Sbjct: 48  KPDVMLLDIKMPKMSGIEVLALMNEKNIS--------LPTIMLTAFEEHHLVLESIRLGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  ++     +      +I           +    +  K   L+
Sbjct: 100 KGYIRKDVSLELLLTAVEKVYAGEVFVQPVVTSQIS---------EEKTAQNENKQDGLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E++ L  I+ G +++EI+ I+  S  T+ N ++ I+ K   + R+ A+  A+   ++
Sbjct: 151 SNEIQVLRLIAAGYSNNEISEIMFKSAGTIRNKVSFILAKLQVRDRTRAVIKAIELGVI 209


>gi|84495053|ref|ZP_00994172.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
 gi|84384546|gb|EAQ00426.1| regulatory protein, LuxR:Response regulator receiver [Janibacter
           sp. HTCC2649]
          Length = 221

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 58/233 (24%), Gaps = 23/233 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + +  +D    + +  +   +  +  +                    G     LV  
Sbjct: 6   PIRLAIVDDDPMVRAALRMMLGGNSGITVVGEATN---------------GEEALALVPE 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   +D  +           +   +        +    +    F      +      
Sbjct: 51  SGAELVLMDIRMPVRDGLSATEVLLSRD--------RSLKIIVLTTFDADDMVLRALRLG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +       AR+   +  +     ++      ++        +          +   L
Sbjct: 103 AAGFMLKDTPPARLVEAIKTVAAGQPMLSPSVTAQLIAAVTGPDSGADERADARARLDTL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE E    +  G ++ EI+  L +   TV  ++  +  K   + R      
Sbjct: 163 TDREREVADAVGRGLSNAEISAELFMGVPTVKTHVGRLFMKLGVENRVQVAIL 215


>gi|307727236|ref|YP_003910449.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587761|gb|ADN61158.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 215

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 20/221 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D       L   +     +  + E   A     L          +D  ++   
Sbjct: 9   TRLILVDDHPLVRDGLRARLEAVRNLEVVGEAGNAQEALALAASHEPHLVLMDVGMNGMN 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L                     L   +   L           + Y         I  
Sbjct: 69  GIALAGMFHER--------FPAIRVLMLSMHDNLQYVTQAVRAGASGYVLKDSPATEIIQ 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +                                      LT RE + L  +++G +
Sbjct: 121 AISAVLEGKTYFSAG-----------LGARLIQASAMQSPLERLTPRERDILDALADGLS 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           S +IA    +S  TV  +  ++ RK   + ++  I +AV N
Sbjct: 170 SKQIAQRTELSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|296118359|ref|ZP_06836939.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295968637|gb|EFG81882.1| regulatory protein, LuxR:Response regulator receiver
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 227

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 69/223 (30%), Gaps = 10/223 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L    S T  +  L E   G      +R         D  +      
Sbjct: 11  VMVVDDDPTVLSSLRTYFSSTRDIRVLAEARNGVDALEQLRHVDVDIVLADIHMPEMDGV 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L+  +   +   +         +      T    +   AG    Y   +     I   +
Sbjct: 71  TLLHEIRALDNPPF--------FVAITALDTDETMLEVLAGGGAGYIVKSSRPQTIIAAI 122

Query: 145 MLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                 G  +    L  + G L   +    +        +  +T  E + L  + +GK++
Sbjct: 123 RDAVAGGTTVSPHALKRLVGHLPGDKLPAQRDSRDSVLTESRITKTEKKVLKHLCDGKSN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI+  L +S +TV   +++++ +    +R       +R+  +
Sbjct: 183 AEISEALNLSESTVKKQVSNLIGEFGVNSRLQLAVSVIRSGYL 225


>gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans]
 gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans]
 gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans]
 gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   EI     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVSFLT 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|254381597|ref|ZP_04996961.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
 gi|194340506|gb|EDX21472.1| luxR family two-component response regulator [Streptomyces sp. Mg1]
          Length = 235

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 33/238 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + +++ L  + E     V  L      L  +          +R+ AL             
Sbjct: 12  EPISVFLLDDHEVVRRGVHDLLDAEPDLTVVGEAGTAEQALIRIPAL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               +   LD  +       + R +     +           L    F      +     
Sbjct: 59  --RPRVAILDVRLQDGDGVSVCRELRSRMPELAC--------LMLTSFDDEEALLDAVMA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y         +   +  +     ++       +           +       +   
Sbjct: 109 GASGYVLKQITGTDLVTAVRTVAAGQSMLDPGATTRL-------MARMRGDVPKEEQVSG 161

Query: 186 L---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L   T RE E L  +SEG T+ EI   L ++  TV N I+ +  K   + R  A   A
Sbjct: 162 LPGFTDREKEILLMVSEGLTNREIGKRLHLAEKTVKNIISRLFVKLGVERRVQAAVIA 219


>gi|115379306|ref|ZP_01466417.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363688|gb|EAU62812.1| response regulator receiver domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 884

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 16/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
             D  R   V   PT    L +++     +             G      +     Q   
Sbjct: 666 SMDRTRVYVVEDQPTLLKNLVKVLGTFEELEVVGTCQD-----GELAVEDIVQVRPQIVL 720

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +       + + +           +     L    F    +         + Y   
Sbjct: 721 LDLELPGLNGIQVTQRVKRR--------VSNVEILILTSFEDEQKVYEAIQAGASGYLVK 772

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                +IR  +  +   G ++             Y  ++           + LT  E E 
Sbjct: 773 RVGPEKIRSSIREVMEGGTVLEPIIAKRFW---NYFHSLQAKPAGKPENPWGLTPAEFEV 829

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++++G ++ E+  ++ + R TV  +++ I RK    +   A+  A++  +V
Sbjct: 830 LRYVAKGLSNAEVGEVMTLERRTVRTHLSHIYRKMGVNSHVEAVVLALKAGVV 882


>gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 258

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 80/237 (33%), Gaps = 14/237 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-DW 82
           +      + +   +      ++      L   +   H L V   L  +  L     +  +
Sbjct: 19  ADALLLLERIQNCLDCRSRQAFAHLFPKLRSLLPFDHALAVIARLEDQTALAIDCCNISF 78

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT---------PPAGMDNRYCSL 133
           P   +R    ++      ++++      P+                      M   + + 
Sbjct: 79  PEQWLRAYTAADAFAGDAIVRQALSGPAPLHWAETTPRLPRPNALSLCRDFRMRQGWVAA 138

Query: 134 TFD--VARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     AR R          +        L  +        +      V   +   L+ R
Sbjct: 139 SAPLFAARERALFCFAGEVGRHDRRSAAILGHLLPHLHLALSQTLRASVPDREPIALSRR 198

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L W+ EGK+S +IA++LGI   TV  ++A++MRK     R+  +A A+R  ++
Sbjct: 199 EREVLDWLKEGKSSWDIAMVLGIRERTVRFHVANLMRKLGAVNRAQTVALALRRGLI 255


>gi|167588066|ref|ZP_02380454.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 215

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 65/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       + H+   +     +                    G +   L    
Sbjct: 2   IKVILADDHAVMRDGLRHILETAGGFEIIGEACD---------------GPATLALAERG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +L++ +                 L   +               
Sbjct: 47  AADVLLLDLSMPAPTGIELLKLLKTHAPT--------LRTLVLTMHAEEQYAARAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   +  +   G  +       +               V       L+
Sbjct: 99  TGYLTKDSATAELVAAVGKVASGGVYVSPSAAESLA--------RTLHAPVETPPHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  I  G+T  +IA  L +S  TV+ Y   I+ K      +  I YAVR+ +
Sbjct: 151 VREFDVMRRIVAGQTVTQIASTLALSAKTVSTYKMRILEKMDLPHDAALIRYAVRHGL 208


>gi|94263624|ref|ZP_01287434.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93456044|gb|EAT06195.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 24/224 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHF-----LLVRWDLFQEQKLDSIVSSDWPF 84
            ++ AR+  +D    +   + A+ E  G                   Q+ D I+      
Sbjct: 7   DNIAARIYLIDDHQLFREGLQAILETHGIDVVGSAGTAAEALQTVSSQRPDIILLD---- 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIR 141
             +        D    +    +     +      +     G+    + Y   T    ++ 
Sbjct: 63  --LHLGDADGVDCIEPLRSLCSAAKIILLTADESSDALNRGLQHDVDGYLLKTMPALKLV 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                             + LT RE E L W+SEGK
Sbjct: 121 EAISDALTGAIVLPTGLKR----------QTPAPLQPSPENQYGLTPREREILHWLSEGK 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EI VI  IS NTV +++  +M K     R      AV +  
Sbjct: 171 SNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESGY 214


>gi|84497630|ref|ZP_00996452.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
 gi|84382518|gb|EAP98400.1| two-component system, regulatory protein [Janibacter sp. HTCC2649]
          Length = 210

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +S    +  + E   GA    L          +D  +     
Sbjct: 3   RILVVDDHPVVRAGMVALLSELEDLDVVGEAGNGAEALALSPRLAPDVVLMDLRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 L    + T  + +         Y       A +   
Sbjct: 63  AEATARLRAQPDPPE--------VLVLTTYDTDADIVRAVESGARGYLLKDTPPAVLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +       A              ELT RE++ L  ++ G ++
Sbjct: 115 IRRAALGETVLAPPVAARLAERLRAPAQ------------VELTPRELDVLQAVARGLSN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+   L I   TV  ++  I  K     R+ A+  A +  ++
Sbjct: 163 GEVGRELFIGEATVKTHLLRIFAKLEVTDRTAAVTAAYKIGLI 205


>gi|329924857|ref|ZP_08279807.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328940393|gb|EGG36719.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 223

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 9/212 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D L     L   +     M  +     G     L      +   LD  +        +
Sbjct: 15  ADDQLLTREGLRTILDLEDDMEVVGVAKNGEEACELADALQPRLVLLDIQMPVMDGIQAL 74

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +  S  D +         L    F      +   A   N Y     D  ++   +   
Sbjct: 75  KHIKQSHPDIF--------ILILTTFIETDYIVEGMAHGANGYMLKDMDADKMIASIRDT 126

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                I+      ++       +        +      LT RE E    + +G  + EIA
Sbjct: 127 IAGQFILPAPVAAKLAARMNRMSEGHSGLRKNRLDRIRLTEREEELARLMVQGLNNREIA 186

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +L I+  T  NYI+++  K     R+ AI  
Sbjct: 187 DMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 218


>gi|115522657|ref|YP_779568.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115516604|gb|ABJ04588.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 237

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 60/241 (24%), Gaps = 27/241 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ + +  +     S +  L      +  +            +    +           
Sbjct: 19  SRLRVFIADDHPLILSGMKTLLATDPEIELVGEAVDGP---SALRRAIDL---------- 65

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      ++++ +          V      L   V             
Sbjct: 66  --DPDVAVFDLSMPGLNGIEVIQKLFA--------VRPHARVLVVSVHEDGANLRRLLKM 115

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +  G+  +   G  +      +     A  A+              
Sbjct: 116 GVAGYILKRSATEELVRGIHAVAHGGIYLDPAIAGQAVGRLAQAASDSVEGGCLA----H 171

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   + G ++  I+  L +   +V  Y A  M K    +R   I +A+    
Sbjct: 172 LSAREKEVLQLAAVGHSNKVISAKLEVGPKSVETYKARAMEKLGFTSRVDLIRFALSMGW 231

Query: 246 V 246
           +
Sbjct: 232 L 232


>gi|330891428|gb|EGH24089.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 222

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPDLKVVIFTMDDSTDHLEAAISAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDPSRDEVIAGLQRVARGEEALNSTVSARL------LRRMTERNTSGAALPESLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 156 PRERQVLGLVGGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLV 214


>gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
 gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94]
 gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94]
 gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10]
 gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1]
 gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1]
          Length = 259

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 21  QSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 80

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 81  IDPVFQEDAPYYRNDTRAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 138

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 139 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 198

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 199 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|170695941|ref|ZP_02887080.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170139125|gb|EDT07314.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 266

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 68/237 (28%), Gaps = 17/237 (7%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLF 69
            L R     T  +  +    D           V+    M    E   G     LVR   F
Sbjct: 45  ALERFHRTDTKPMIRVLIADDHAIVRGGFRQFVADEPDMCVAAEAATGDETISLVREQAF 104

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      D +R +     ++          L    +      I       N 
Sbjct: 105 DVVLLDIAMPDKNGIDTLRVIKQVRPEQG--------VLILSGYPESQYAINLLRAGANG 156

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +   +   I   +  +    R +       +                       L+ R
Sbjct: 157 YLNKDCEPDEIVRAIRAVARGHRYLSEAVADTLA--------DNLDKPAAARPHEALSER 208

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +    ++ G+   +IA  L +S  TV+ Y A ++ K      +    YA++N ++
Sbjct: 209 EFQIFCKLAAGQIPTQIAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 265


>gi|27764012|emb|CAD60529.1| CinR protein [Streptomyces cinnamoneus]
          Length = 216

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 59/224 (26%), Gaps = 10/224 (4%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +  L    D L R+   D                G                +D  +   
Sbjct: 1   MIRTLIVDDDSLVRLALADILDDVPGIEVVAQAGDGLEAVQRAGALRVDVALMDVRMPRM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +                 +    F          A   + +     D A I 
Sbjct: 61  DGIAATERLRALPSPPE--------VVMLTTFDLDQYVYDALAAGASGFLLKDTDPAEII 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + ++     ++       +  +  Y     +       +   LT RE + L  ++ G 
Sbjct: 113 RAIQVVAAGQAMLHPAAARRL--VDRYHRTASRDVQAAQQRLARLTPRESDVLGLLAAGA 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  LG+  +TV  +++ I+       R  A   A    +
Sbjct: 171 SNAEIADGLGMRESTVKAHVSRILAALEVGNRVQAALCARDAGL 214


>gi|318060702|ref|ZP_07979425.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075493|ref|ZP_07982825.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 222

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 58/231 (25%), Gaps = 16/231 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R        +    L  ++     +             G       R        +
Sbjct: 8   PRPLRVLVAEDHASVRAGLVLILRGAPGIEVAGEA-----ADGEEALARARALRPDVVLM 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +         R +                 L    F                +   T
Sbjct: 63  DVRMPRLDGVAATRAIVAEGLAD---------VLVLTTFDLDAYVFGALRAGAAGFLLKT 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   +   +  +     ++       +  LA +                 LT RE E L
Sbjct: 114 AEAGELVAAVRTVAAGDGVVDTAVTRRL--LAEFARGGTGRERPAPEGLARLTPREREVL 171

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + + EG  + EIA  + ++  TV ++++ ++ K   + R  A   A    +
Sbjct: 172 SCLGEGLGNAEIAERIDVAEGTVKSHVSRLLAKLELRNRLQASLLARDLGL 222


>gi|295108610|emb|CBL22563.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus obeum A2-162]
          Length = 206

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +D   T  +  +   ++ +  +                    G     L    
Sbjct: 1   MKIVIVDDDCLVTGALKTILEANEDVDVVATGLD---------------GRDAVRLYGEH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    +     A +E    Y             F      +       
Sbjct: 46  KPDVLLMDIRMKNMNGLE-----AATEILYAYPEANILL---LTTFLDDEYIVKALRIGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D A I   L  +     +   +       + +   ++ ++ D        + 
Sbjct: 98  KGYLLK-QDYASILPALRAVCSGQTVFGME-------IVSKIPDLIRNEDGFDYAAHGIN 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E +  I++G ++ EIA  L +S  TV NY++SI+ K   + R+    +  ++
Sbjct: 150 EREKEIIRLIADGNSNKEIAAELYLSEGTVRNYLSSILNKLQLRDRTQVAVFYYQH 205


>gi|291613092|ref|YP_003523249.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291583204|gb|ADE10862.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 210

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 73/222 (32%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   V  +  M    E   G     +   + +    LD  +      
Sbjct: 4   ILIADDHALIRKGLKQIVDDSADMRVTGEAENGMQAIQMSLQNQYDMILLDISLPDKNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+++ +  +                 P        +         Y +     A++   +
Sbjct: 64  DVLKQIKAN-----CPNTPILMLSMHP---EEQYAVRSMKAGAAGYLNKQSAPAQLLTAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + I  +       LA   AN              L+ RE + L  ++ GK   
Sbjct: 116 RNVAIGRKYISTE-------LAEQLANGLSE-GYKELIHQTLSDREYQTLCLMASGKKLS 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A I+ +S  TV+ Y + ++ K   KT + AI YA+ N+++
Sbjct: 168 EMAKIMSLSPKTVSVYRSRLLEKMKLKTNAEAIHYAISNHLI 209


>gi|126698866|ref|YP_001087763.1| two-component response regulator [Clostridium difficile 630]
 gi|255100287|ref|ZP_05329264.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306226|ref|ZP_05350398.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250303|emb|CAJ68125.1| Two-component response regulator [Clostridium difficile]
          Length = 215

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 74/243 (30%), Gaps = 31/243 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +++     +  + +  + L  +                    G       
Sbjct: 1   MNKIKVLIVDDEKLIRKGLKIILSSYNDLEIVGDASN---------------GYEALEFC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + +      +D  +         R +          +L          F+          
Sbjct: 46  KMNDVDIVLMDIRMKVCDGVLGTRLIKEYNNSITLLIL--------TTFNDDEYIKDAMK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + Y         +  G+   F    ++ +         A       K+       D 
Sbjct: 98  FGASGYLLKDSSDEVLHEGIRSSFFGNIVLDKSV-------AEKIMTSEKTVKQEHLYDM 150

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+    +A +N
Sbjct: 151 YNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILAKLELRDRTQLAIFAFKN 210

Query: 244 NIV 246
            IV
Sbjct: 211 KIV 213


>gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 226

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 74/235 (31%), Gaps = 24/235 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +D      V           R+   +        +        A+          
Sbjct: 11  LLLIDDDPNLILLVKDYLEFRGY--RVTTAENGPEALEILERGANTAKAAEI-------P 61

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D I+        +  +    +     V+    +          + IT      + 
Sbjct: 62  DMIICDLIMPEMDGHAFLEKIRQDSRFSCIPVIFLSPKGQS------QDKITGLITGADV 115

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y    F+   +   +             +   +   +    +   +     G + ELT  
Sbjct: 116 YMVKPFEPEELVARVES--------SLKQAGRLLKRSTRIHSPDVTPVQVQG-NVELTPT 166

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E++ +  +++G  + EIA  L +S+ T+ +++++++ KT    R+    +A+ +N
Sbjct: 167 ELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIESN 221


>gi|5639944|gb|AAD45903.1|AF161327_2 response regulator ChrA [Corynebacterium diphtheriae]
          Length = 199

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 29/221 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-------FQEQKLDSIVSSDWPFD 85
           + R++ +D        + ++ +       +    D              D  +       
Sbjct: 1   MIRVMLIDDHPVVRAGLRSILDSFDDITVVAEASDGSNINTKGIDVVVTDIQMPGTDGIT 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R +A +              L    + T  + +         Y       + +   ++
Sbjct: 61  LTRALANAGGPP---------VLILTTYDTEADILAAVEAGAMGYLLKDAPESALHDAVV 111

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             F   R +  +    +                       L+ RE+E L  + +G ++ +
Sbjct: 112 ATFEGRRTLAPEVANAL-------------MQRVSKPRQALSAREIEILQNLEQGLSNRQ 158

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +A  L IS  TV  ++  I  K     R+ AI  A +  ++
Sbjct: 159 LAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|238062419|ref|ZP_04607128.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237884230|gb|EEP73058.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 150

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + +       A +  G+ ++     ++       +       A   +       
Sbjct: 23  ALRAGASGFLLKDTPPAELLAGIRVVAAGEGLLAPTVTRRLI---DEFARRPEPARPLPR 79

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   +T RE E L  I+ G ++ E+A  L +S  TV  ++  ++ K A + R+  +  A 
Sbjct: 80  RLEGVTEREREVLMLIARGLSNAELAEQLSLSLPTVKTHVGRLLTKLAVRDRAQLVIVAY 139

Query: 242 RNNIV 246
              +V
Sbjct: 140 ETGLV 144


>gi|229589685|ref|YP_002871804.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229361551|emb|CAY48427.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 213

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    +  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLIKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  S  D    V+              P          
Sbjct: 47  KPDVVLMDVKMPGIGGLGATTKLLRSHPDIKVVVVTVC--------EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++        +   + D  +     L+
Sbjct: 99  AGYLTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLA-----IKSFQPTSDSPFDA---LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K A  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLAISSDVELTLLAVRHGMV 209


>gi|261404151|ref|YP_003240392.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261280614|gb|ACX62585.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 201

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 64/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  + +     ++ L +  D +  +  ++        +                  
Sbjct: 2   IRIVLAEDQKLLRGALATLLSLEDDIEVVGQVENGEEVMSMIQQY--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +  ++             +    F              
Sbjct: 47  EPDVAVLDIEMPLKTGLDIAELIQKNKS--------ACRVIILTTFARPGYFQRAMQAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  ++   R+I  +                      W     L+
Sbjct: 99  YGYLLKDTGSEELADAIRRVYDGKRVINSEL-----------------SLAIWDDPCPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +   ++G    +I   L +S  TV NY++  + K    TR  AI  A     +
Sbjct: 142 PREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKGWL 200


>gi|217978174|ref|YP_002362321.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503550|gb|ACK50959.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 223

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 55/241 (22%), Gaps = 32/241 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + V  L      +  +                    G S   L    
Sbjct: 10  LRVFLADDHPVVLAGVKALIGADPEMTIVGDACD---------------GRSALSLATEL 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +             +   L   V               
Sbjct: 55  KPDIVILDISMPGLNGTKVAELLRA--------ACPQSKILALTVHEDRGYLRQLLELGV 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFE 185
             Y         +   +  +   G  +          +A                    +
Sbjct: 107 AGYVLKRSAAEELIRAIRAVAAGGIYLDPA-------IAGKVLGGIPQKATVVALSAIAD 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   + G +   +A  L IS  +V  Y A  M K    +R   + YA     
Sbjct: 160 LSERETEVLRLTAGGHSHKAVAAELRISVKSVETYKARAMEKLGFDSRVQLVRYAAGKGW 219

Query: 246 V 246
           +
Sbjct: 220 L 220


>gi|170693955|ref|ZP_02885111.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170141027|gb|EDT09199.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 218

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       V  L     +   +                    GA     V   
Sbjct: 3   LRILLADDHAVVRQGVRQLLLDRGVAREVTEAQT---------------GAEALDAVAAH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           +          +      +       
Sbjct: 48  SFDVVLLDISLPDMNGVEVLKRLKRK-----APRVAVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T D A++   +  +    + +       +          + S+D       +L+
Sbjct: 100 AGYLSKTVDAAQMIGAIQQVAAGRKYVSPAMAEALA--------DYVSFDGEQLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y   ++ K   +  +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIAEALSLSVKTVSVYRTRLLEKMKLRNNAELTFYVMSNRLV 210


>gi|159037162|ref|YP_001536415.1| two component LuxR family transcriptional regulator [Salinispora
           arenicola CNS-205]
 gi|157915997|gb|ABV97424.1| two component transcriptional regulator, LuxR family [Salinispora
           arenicola CNS-205]
          Length = 212

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L T S  +  +           R+ AL               
Sbjct: 2   IRVYLLDDHEVVRRGLADLLTASGDIEVVGESGLAQEAARRIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D+ R +   +             L    +              
Sbjct: 47  RPDVAILDARLPDGNGIDVCRDIRALDSSI--------KGLILTSYEDDEALFAAIMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++          +        +S      +   LT
Sbjct: 99  AGYVLKQIRGTDLVDAVRRVAAGQSLLDPA-------ITTRVLERIRSGVEQPRELKSLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R 
Sbjct: 152 EQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATRL 207


>gi|148271269|ref|YP_001220830.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|31559720|gb|AAP57292.1|AF393183_4 response regulator RegB [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829199|emb|CAN00110.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 223

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 7/222 (3%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +             G S F ++R        +D  +      
Sbjct: 3   DVVLVDDQAMIRAGLRGILEDAGIRVIGEAADGRSAFAVIRGSRPDVVLMDLRMPILDGV 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +           L     L    F    E +       + + + + D   +   +
Sbjct: 63  GATAALRA------DPDLNAVRILVLTTFDGDEEVLAALRAGADGFLAKSADSESLIAAV 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +       +      +     +      +   LT RE + +   + G  + 
Sbjct: 117 EAVAKGDTSLSAGAAKTVVS-DLRRRGRSATDVELIARTATLTHRETDVVLGAARGLDNV 175

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS  TV  ++   M K   + R   ++ A R+ +V
Sbjct: 176 SIARDLFISPATVKTHLNRAMTKLHARDRGQLVSIAFRSGLV 217


>gi|21220777|ref|NP_626556.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7619763|emb|CAB88186.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 62/233 (26%), Gaps = 29/233 (12%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R    R             LA ++ ++  +    ++ A     G                
Sbjct: 7   RAHPVRVLLAEDQGMMRGALALLLGMEDDIEVVAQVSA-----GDEIVAAALTHRPDIAL 61

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      D    +                 L    F                +   
Sbjct: 62  LDIELPGLSGLDAAAELRERA--------PGCRVLILTTFGRPGYLRRAMEAGAAGFLVK 113

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              V  +   +  +     ++                               LT RE + 
Sbjct: 114 DGPVEELAGAIRRVLGGETVVDPALAAAALSAG----------------PSPLTARECDV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L   ++G T  +IA  L +S +TV NY++S + KT T+ R+ A+  A     +
Sbjct: 158 LRASADGATVADIAGALHLSESTVRNYLSSAIGKTGTRNRAEALRAARGQGWL 210


>gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
 gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           tomato T1]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 23/244 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++       L + 
Sbjct: 4   AMTESATKDLLIQQMVSTITELDGQTAIEKALQWLRRECDSERAMFYQFKGP---MLLTF 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITP 122
           ++S+      +     E      V++                        +    +    
Sbjct: 61  ITSNVDDAWGQAYRQHELITQDPVIR-CYRNQLGFLNWQDAFKQYPASACYEEAVDACEL 119

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              +   Y S           +  L    R I  ++ + +  L     ++ +        
Sbjct: 120 LPAISYGYTS-HCRGTDSVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKF---S 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+ 
Sbjct: 176 SRCLTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALC 235

Query: 243 NNIV 246
             ++
Sbjct: 236 RGLI 239


>gi|326774095|ref|ZP_08233377.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636234|gb|EGE37138.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 237

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S V          + +      +        +   + A H L     
Sbjct: 22  LRVLVVDDHALVRSGVR---------SELTAHAPDLDIIAEADDVEGAIAAVHAL----- 67

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +A          +     L   V     + +       
Sbjct: 68  RPDVVLLDVHLPGGNGGGGAEVVASCH------DVPETRFLALSVSDASDDVVGVIRAGA 121

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +              +       A      D    +   L+
Sbjct: 122 RGYVTKAISTEDLAQAVRRVAAGDAAFSPRLAGFVLDAFGAGAGEVAVADTELDR---LS 178

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  I+ G T  E A  L IS  TV  ++++++RK     R+    +AV   IV
Sbjct: 179 AREREVMRLIARGYTYKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAVARRIV 237


>gi|269796113|ref|YP_003315568.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098298|gb|ACZ22734.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 62/204 (30%), Gaps = 3/204 (1%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 + A  + VG +  +     + +E     ++                  +  ++L
Sbjct: 20  AGVRASLDAHVQVVGEAADVDAAVAVIRETMPAVVLLDVHLPGGGGGGGAEVITRCADLL 79

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                L   V     + +         Y +       +   +  +     +         
Sbjct: 80  AGTRFLALSVSDAAEDVVAVIRAGARGYVTKAISGQELGDAIDRVSGGDAVFSP---RLA 136

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           G +            V   +   L+ RE E +  I+ G +  E+A  L IS  TV  +++
Sbjct: 137 GFVLDSFGTQAADVAVADDELDRLSAREQEVMRLIARGYSYREVASELFISIKTVETHVS 196

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++RK    +R     +A    ++
Sbjct: 197 AVLRKLQLSSRHELTRWAAARRLL 220


>gi|257054193|ref|YP_003132025.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584065|gb|ACU95198.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 214

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  L +    +  +                          +    
Sbjct: 3   IEVLLVDDHEVVRRGLRELLSDEPDIEVVAEASSADEAL-------------AVAMHVEP 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +    +     +L R +             R        F      +       
Sbjct: 50  DVAVVDVRLGENETDGIELCRELRSQ------PAAPRCLV--LTAFDDEEAMVGAIMAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +                      +L+
Sbjct: 102 SGYLLKQVRGQDVVHAVREVAAGRSLLDPLTTARLL--------EKVRSPERPDPLDKLS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE   L  I +G ++ EIA  L ++  TV NY+ S++ K   + R+ A A+  R+
Sbjct: 154 ERERSVLELIGQGLSNREIAERLFLAEKTVKNYVTSLLSKLGMRRRTQAAAWVARH 209


>gi|239982332|ref|ZP_04704856.1| chitinase two-component response regulator [Streptomyces albus
           J1074]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 55/228 (24%), Gaps = 15/228 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +               +   L          +D  
Sbjct: 3   IRVVVAEDQSAVRAGLVLILGSAPDIEVAGEAADGE-----AAVRLAEELRPDVVLMDVQ 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F                +     D 
Sbjct: 58  MPRLDGVSATRAVVAGGWAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNTDA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +   A       +       +   LT RE E L  +
Sbjct: 109 PGLLAAVRTVAAGEGLIAPAVTRRLIA-AFATGRAPRPAGAEPPELAALTRREREVLGCL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++  IA  L ++  T   +++ ++ K   ++R+ A   A    I
Sbjct: 168 GEGLSNARIAERLEMAEATAKTHVSRVLGKLGLRSRAQAALLAQELGI 215


>gi|238059977|ref|ZP_04604686.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881788|gb|EEP70616.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 232

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 64/226 (28%), Gaps = 12/226 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
                 D       +   +     +  + E   G +   LV         +D  +     
Sbjct: 3   RALVVDDQGLVRAGIRVLLDTAPDIEVVGEAADGHNAVRLVERLRPDVVLMDIRMPRVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +                 L    F          +     Y     + A +   
Sbjct: 63  IEATRRLLA--------AAPLTNVLILTTFADDDSVYGALSAGAVGYLVKDGEPADMLDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TGREVECLTWISEG 200
           +        ++    L  +   A       ++ D+       L   T RE + L+ +  G
Sbjct: 115 VRRAARGEPLLAPSVLARVVDRARRSHAADRNGDIEQPDTAVLAALTARERDVLSLVGVG 174

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EIA  L +   TV  +I +++ K   + R  A   A R  +V
Sbjct: 175 LSNAEIARDLNVGVTTVKTHIVALLEKLGIRNRVQAGILAHRLGLV 220


>gi|190891418|ref|YP_001977960.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696697|gb|ACE90782.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 207

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 35/240 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSH-LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +  + + +  +       V+  L   SD +                            ++
Sbjct: 1   MTAITVGVVDDHPLFREGVTRSLSEMSDFVVIGEGASSE----------------DAAMI 44

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +      LD  +       +   +A S              L   V   +   +   
Sbjct: 45  ASNNRPDVMLLDVSMPGGGLAAIGNVLAQS---------PTTKVLMLTVSEEVDTLLGAL 95

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   +  +    R I      ++   + +        D    K+
Sbjct: 96  QQGAMGYVLKGVGSRGLAEAIQTVLSGARYISPTMSTKVMENSLH--------DAASDKN 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A       
Sbjct: 148 S-LTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAALQWRER 206


>gi|148245043|ref|YP_001219737.1| two-component system, nitrate/nitrite response regulator
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326870|dbj|BAF62013.1| two-component system, nitrate/nitrite response regulator
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 209

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 14/178 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++++ +          ++               +  +      
Sbjct: 44  SVDIILLDLRMPQMSGLEVLKILKTKNITI--PIV------MLTTSTQEYDLRSCLKHGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   L  +     ++ +D      +LA    +     +  +G    LT
Sbjct: 96  QGYLLKDMDPDELVDALDEVIKGSIVVAQDMR---YILAKALRDELTDNEPSFGS---LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +S G ++  IA  LGIS  TV  ++ SI++K +  +R        +   
Sbjct: 150 SREKEVACQVSSGYSNKVIARELGISDGTVKLHVKSILKKLSLSSRVEVAVMVTQKGY 207


>gi|110637079|ref|YP_677286.1| fimbrial Z protein; signal transducer [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279760|gb|ABG57946.1| fimbrial Z protein; probable signal transducer [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 212

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         +         +   +  ++      + D    +           K +  +
Sbjct: 93  VMAVRAGVTGFVRKNVSKEELLHAVQQVYTNKEYYVSDVTQVL----------LKGFLAN 142

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D   + RE+E L +I +G+++++IA IL IS  T+  +  +IM+K   K  +  I +
Sbjct: 143 QTSDSIFSDRELEVLRYICKGRSNEQIADILFISEKTIATHRRNIMKKAGVKKSTELIVW 202

Query: 240 AVRNNIV 246
           A+ N IV
Sbjct: 203 ALDNKIV 209


>gi|325527607|gb|EGD04913.1| Two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 263

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 17/228 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R           + L  M+                E        L          +D  +
Sbjct: 10  RVMIAEDHDLLRNGLRSMLSAQGDYEVVGEARDGKEACH-----LAMTLAPDLILMDLSM 64

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D    +           ++        V               + Y        
Sbjct: 65  RGMNGIDASATIKRRT-----PTIRIV---VLTVHQNEEYVREALRAGVDGYVLKDVSFD 116

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            + + + ++    R +  +      ++ ++                 LT RE   L  I+
Sbjct: 117 ELLLAMRMVMQGKRHLSAEVCG--YMVDSFVTGR--EAPAPRKAWDVLTARERSVLKLIA 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG+T+ ++   L +S  T+  Y AS+M K      +  +  A+   ++
Sbjct: 173 EGRTNRQVGQYLNLSPKTIEKYRASMMHKLHLANLTELVLVAMNMGLL 220


>gi|325110990|ref|YP_004272058.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324971258|gb|ADY62036.1| two component transcriptional regulator, LuxR family [Planctomyces
           brasiliensis DSM 5305]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 14/219 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M    E  G A        +  +   +D  + +   
Sbjct: 17  RILLVDDHPVVRQGLRMMIEREGDMQVCGEANGMAEAMKSYFENKPEVVVVDISLHNGSG 76

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +LV+ +   E        +    L C +                 Y +    + ++   
Sbjct: 77  IELVKELIAHE--------ENLKILVCSMHDESLFADRALHAGAKGYINKEEAMDKLIDA 128

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +         +L        +           L+ RE+E    I  G T+
Sbjct: 129 IRRVAAGRVYLSDQMTDR--MLCRQVGAGDERPKSALE---TLSDRELEVFEQIGHGVTT 183

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +IA  L +S  TV  Y  +I  K      +    +AV+
Sbjct: 184 RQIAEKLHLSPKTVETYRENIKHKLNLANATELTQHAVQ 222


>gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840]
 gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840]
          Length = 268

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 30  QSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLITLPATWVARYSSKNYFA 89

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 90  IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 147

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 148 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 207

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 208 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 259


>gi|238793307|ref|ZP_04636933.1| hypothetical protein yinte0001_34000 [Yersinia intermedia ATCC
           29909]
 gi|238727276|gb|EEQ18804.1| hypothetical protein yinte0001_34000 [Yersinia intermedia ATCC
           29909]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 18/223 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D    +  +   ++   R   + +   G   + L R        +D  +    
Sbjct: 3   TKLLIVDDHELIINGIKNMLAAYPRYQIVGQADNGLEVYNLCRQTEPDIAIIDLGLPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++      +  + +  ++          +               Y         +  
Sbjct: 63  GLDVI-----IQLLRRWPTMKIL---ALTARYEEHHASRTLNSGALGYVLKKSPQQILMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R I          L +   N          +   LT RE + L  I+EG  
Sbjct: 115 AIQTVSVGKRYIDPA-------LNSSLVNKLAQGTDA--RQPVLTPRERQILKLITEGAC 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L IS+ TV  +  ++M+K      +  I ++ R  +
Sbjct: 166 NRIIAAHLSISQKTVETHRLNMMKKLDVHKVAELIHWSYRLGL 208


>gi|291454177|ref|ZP_06593567.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357126|gb|EFE84028.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 214

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 55/228 (24%), Gaps = 15/228 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +               +   L          +D  
Sbjct: 2   IRVVVAEDQSAVRAGLVLILGSAPDIEVAGEAADGE-----AAVRLAEELRPDVVLMDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F                +     D 
Sbjct: 57  MPRLDGVSATRAVVAGGWAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNTDA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +   A       +       +   LT RE E L  +
Sbjct: 108 PGLLAAVRTVAAGEGLIAPAVTRRLIA-AFATGRAPRPAGAEPPELAALTRREREVLGCL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++  IA  L ++  T   +++ ++ K   ++R+ A   A    I
Sbjct: 167 GEGLSNARIAERLEMAEATAKTHVSRVLGKLGLRSRAQAALLAQELGI 214


>gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 209

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 30/237 (12%)

Query: 10  IVLNREDEQRTSFVS-HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +V    D+  T +++      S  LA+++ L+  +         T   G + +L +    
Sbjct: 1   MVKGDRDKMITLYLAEDQSMLSSALAQLLNLEDDLKVLG-----TSGDGQTAWLDINRLK 55

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D+   +  +              +    F              +
Sbjct: 56  PDIAILDIEMPKATGLDVADDILAAHL--------ATKVIILTTFAQKAYFARAVKAKVS 107

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +     I   + +  +   A                D  L+ 
Sbjct: 108 GYLLKDSPSDDLVTAIRNVMTGQTIYDPELVRNMVNAA----------------DNPLSD 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A+  A  N  
Sbjct: 152 QEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKNNKW 208


>gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 238

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 17/222 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           +HL    D  A +        +  ++    + +G  +F    +  +   +   ++  ++P
Sbjct: 3   THLQPLMD--ALLTSQPDRKVFLSQLAPCAQALGFEYFSYTVFSCYPASRPKMLIEGNFP 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTF 135
              +             V+++        +                   G+   +     
Sbjct: 61  ECYLEDYRKLRVYLQDPVIEQAHHSTLQFYWDEHFYQDKPELWWRMAQFGIREGWSQSVK 120

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWE----IGLLAAYQANMFKSYDVHWGKDF---ELTG 188
           D       L        +               LA       +   +    +     LT 
Sbjct: 121 DCYGRLGILTFAGKSIPVQSPQASARNETFFLWLAQMVHKTLREALISVNDEAIKDVLTL 180

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           RE + L W SEGKTS+E A+++G+S  TVN +I + ++K + 
Sbjct: 181 REKDILRWCSEGKTSEETALLMGLSERTVNFHIGNSIKKLSV 222


>gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13]
 gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13]
          Length = 259

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 21  QSDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 80

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 81  IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 138

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 139 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 198

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 199 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|86144900|ref|ZP_01063232.1| two component response regulator UhpA [Vibrio sp. MED222]
 gi|85837799|gb|EAQ55911.1| two component response regulator UhpA [Vibrio sp. MED222]
          Length = 202

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 27/220 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  ++      +  E       L +         LD  + 
Sbjct: 4   VALVDDHVIVRSGFAQLLSLETDITVVGEFNSAAEAR-----LGLPSCHPDVVILDISMQ 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                 +   V  +              Y S       
Sbjct: 59  DESGLSLLEEIPS-----------GIASIMLSVHDSPAMVEKSLELGAKGYLSKRCSPDE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +      G  +  D       +A   A   K+         +LT RE E    ++ 
Sbjct: 108 LIQAVHTSANGGCYLTPD-------IAIKLATPMKNKASLN----QLTRRESEVCQLLAT 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G     IAV LG+S  TV+ + A+ M K   K        
Sbjct: 157 GLDVKSIAVELGVSHKTVHVHRANAMDKLNVKNNVELAKL 196


>gi|78484154|dbj|BAE47185.1| response-regulator protein [Streptomyces sp. AJ9463]
          Length = 216

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 59/228 (25%), Gaps = 14/228 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  ++     +             G     L R        +D  
Sbjct: 3   IRVVVAEDQSAVRAGLVLILRSAPDIEVVGEAG-----DGEEAVRLARELRPDLVLMDIQ 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +   +             L    F                +     + 
Sbjct: 58  MPRLDGVSATGLVVAGQLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNAEA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I       +    A  A +  +          LT RE E L  +
Sbjct: 109 RELLDAVRTVARGEGLIAPAVTRRLIAEFAGTAPVRPAKAPDLSVLDVLTRREREVLGCL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +G ++ EIAV L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 169 GDGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 216


>gi|56477414|ref|YP_159003.1| transcriptional regulator NarL [Aromatoleum aromaticum EbN1]
 gi|56313457|emb|CAI08102.1| Nitrate/nitrite TWO-component response regulator NARL [Aromatoleum
           aromaticum EbN1]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
             ++V+  +       +  L         +                    G      +  
Sbjct: 8   PQSVVIIDDHPLFRKGLIQLLRTVPGFRLVAEAAD---------------GKEGIAHILH 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++++ +  ++ D           +   V     + +      
Sbjct: 53  LRPDLLLLDLNMKDMSGLEVLKFVRQADLD--------TRVVMVTVSDAAEDLVAALRAG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y     +  ++   L        ++         L+AA      +   V    D  L
Sbjct: 105 ADGYLLKDMEPEQMVEALQAAAAGRIVVSDALT---HLMAAALRQEKRPDSV---TDAGL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T +E   L  I+ G ++  IA  LGI+  TV  ++  ++RK   ++R  A  +AV N
Sbjct: 159 TEQEQRILERIAAGLSNKLIARELGIAEGTVKVHVKHVLRKLNFRSRVEAAVWAVAN 215


>gi|300859475|ref|YP_003784458.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686929|gb|ADK29851.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302207158|gb|ADL11500.1| Two-component response regulator ChrA [Corynebacterium
           pseudotuberculosis C231]
 gi|302331719|gb|ADL21913.1| Two-component response regulator ChrA [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277411|gb|ADO27310.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Corynebacterium
           pseudotuberculosis I19]
          Length = 199

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 25/222 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     +  + E    ++      +       D  +      
Sbjct: 3   RVMLIDDHPVVRAGLRTILDSFEDISVVAEASNGANV---NTEGIDVVVTDIQMPGTDGI 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L R +A +              L    + T  + +         Y       A +   +
Sbjct: 60  TLTRALASAGGPP---------VLILTTYDTEADILAAVEAGAMGYLLKDAPEAALHDAV 110

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +  F   R +  +    +                       L+ RE+E L  + +G ++ 
Sbjct: 111 VATFEGRRTLAPEVANAL-------------MQRVSKPRQALSTREIEILQNLEQGLSNR 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++A  L IS  TV  ++  I  K     R+ AI  A +  ++
Sbjct: 158 QLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|120402438|ref|YP_952267.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955256|gb|ABM12261.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 212

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 68/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L +    L  +           R+ A+               
Sbjct: 2   VRVFLVDDHEVVRRGLIDLLSTDPELDVVGEAGSVSEALTRIPAVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      +L R +           +     L    F +    +       
Sbjct: 48  -PEVAVLDVRLPDGNGIELCRDLLSR--------VPGLRCLMLTSFTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +        +  +           L+
Sbjct: 99  SGYVIKDIKGMELAEAIKDVGAGRSLLDNRAAAAL-------MSRLRDTAERADPLLGLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +  R 
Sbjct: 152 SQERVLLDLLGEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFVSRL 207


>gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 242

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 20/230 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +       ++  R+ +  + +       V       Q       S+ P D          
Sbjct: 14  IGTASDHATFKSRLVSFAQNLDFQIVQAVLMIKRPSQPSVVSRLSNLPSDFAEASMDEAD 73

Query: 96  DKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +   VLQR      P  +                    G               +    
Sbjct: 74  SRRDPVLQRLRTASVPFVYDQTTYVEAGAGDLWETQARYGFRTGISMSLHMPGGRQFLFG 133

Query: 146 LLFPKGRIILRDR-----LWEIGLLAAYQANMFKSYDVHW----GKDFELTGREVECLTW 196
            +  +  +   +R     + ++ LLA +         +       K  +LT RE E L W
Sbjct: 134 -VDREQALPADERELMRLMADLQLLAVHAQETAARVMMPKLDSLPKRPKLTPREREVLQW 192

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EGK++  I  IL +S +TV  ++ + M K    ++  A+  A+   ++
Sbjct: 193 TREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAMEIGLL 242


>gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans]
 gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|192362451|ref|YP_001982262.1| GacA [Cellvibrio japonicus Ueda107]
 gi|190688616|gb|ACE86294.1| GacA [Cellvibrio japonicus Ueda107]
          Length = 217

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  + +     +  +    D    +                    G       R  
Sbjct: 2   TKILVVDDHDLVRMGIVRMLADIDGYQVVGDAKS---------------GEEAVTKARIL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +     A  +       ++    +                   
Sbjct: 47  KPDVVLMDVKMPGMGGLE-----ATKKLLTVNPAIKI---IAVTACDDDLYPTRLMQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   I   +  +      +      ++ L        F   +       +L+
Sbjct: 99  VGYVTKGADFTEITDAINKVTRGDLYMSNSIAQQLAL------RTFSGANNQESPFEKLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I+ G+  ++IA    +S  TVN+Y   I  K    +       AV++N++
Sbjct: 153 QRELQTAMLIANGQKVNDIANTFCVSPKTVNSYRYRIFEKLDINSDVELTLLAVKHNLL 211


>gi|94269857|ref|ZP_01291582.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93451041|gb|EAT02000.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 218

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 68/224 (30%), Gaps = 24/224 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHF-----LLVRWDLFQEQKLDSIVSSDWPF 84
            ++ AR+  +D    +   + A+ E  G                   Q+ D I+      
Sbjct: 7   DNIAARIYLIDDHQLFREGLQAILETHGIDVVGSAGTAAEALQTVSSQRPDIILLD---- 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---DNRYCSLTFDVARIR 141
             +        D    +    +     +      +     G+    + Y   T    ++ 
Sbjct: 63  --LHLGDADGVDCIEPLRSLCSAAKIILLTADESSDALNRGLQHDVDGYLLKTMPALKLV 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +        ++                             + LT RE E L W+SEGK
Sbjct: 121 EAISDALTGAIVLPTGLKR----------QTPAPLQPSPENQYGLTPREREILHWLSEGK 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EI VI  IS NTV +++  +M K     R      AV +  
Sbjct: 171 SNHEIGVITDISENTVKSHVKKLMSKFKVNNRVLLAKVAVESGY 214


>gi|134291723|ref|YP_001115492.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134134912|gb|ABO59237.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       + H+   +     +     +               AS   LVR  
Sbjct: 2   ITVLIADDHALVRDGLRHILKSASDFEVVGEARDS---------------ASTIALVRDR 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L++ +   +       L         +       +       
Sbjct: 47  DADVLVLDLSMPGRNGVELIKQIKDEK-----PALHIL---VLTMHAEQQYAVRAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   L  +   G  +      +         ++             L+
Sbjct: 99  AGYMTKESASAELVAALTKIAAGGVYVSLTMAEQFAQSLNEPTDLL--------PHQRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE +    ++ G++  EIA  L +S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 151 DREFDVFRRVTTGESISEIAHALNVSVKTVSTYKMRILEKMQMANDTALVRYAMRHKL 208


>gi|284041837|ref|YP_003392177.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946058|gb|ADB48802.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 11/220 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ------EQKLDSIVSSDWPFDL 86
           + R++  D        +  + E            D           + D ++       L
Sbjct: 1   MIRVLIADDEALVRSGLRMIVESTDDVRVAAEAADGRAAVTETLAHRPDVVLMDIRMPRL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A  E      +   P  +    FH               +         +   + +
Sbjct: 61  DGLAATREL---AALAAPPRVIVLTTFHLDEYVHDALRAGAAGFLLKDTPPRELLHAIRV 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     ++       +  +  + +       +   +   LT RE E L  ++EG ++ E 
Sbjct: 118 VAGGEAMLSPVVTRRL--IETFASGRSAQGALARERLRRLTPREREVLALVAEGCSNAEA 175

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L +S  TV  +++ ++ K     R      A    ++
Sbjct: 176 GRRLQMSEATVKTHVSRLLDKLEAANRVQVALVAFDAGLL 215


>gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 92/254 (36%), Gaps = 34/254 (13%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++  ++ RT  V+ + +RSDL  R+I           M  L E  G + F +    L  +
Sbjct: 9   MSSAEQLRTVRVNRISSRSDLFPRLI----------AMQKLAEAQGFAIFRVSGSGLPAK 58

Query: 72  QKLDSIVSS------DWPFDLVRCMALSEKDKYYNVLQRP------------TELFCPVF 113
           Q+L   + +       +             D     L                  F P  
Sbjct: 59  QRLVCELENWGSSNAGFGKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFM 118

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             L + I P +G+          +  +  G +L          D + E+     +     
Sbjct: 119 TRLQDGILPFSGLA-----FPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDL 173

Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            S D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  
Sbjct: 174 LSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVN 233

Query: 233 RSGAIAYAVRNNIV 246
           R  AIA A+R   +
Sbjct: 234 RIQAIAKAIRLGYI 247


>gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 23/239 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S       +++ +  LD   +    +  L     +   +  ++           ++ + 
Sbjct: 9   ASRDLLIQQMVSTISELDGQTAIENALEWLRRECNSERAMFYQFKGPVLLTF---ITCNV 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127
                +     E      V++                        +  + +       + 
Sbjct: 66  DDAWGKAYRQREFIPQDPVIR-CYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAIS 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A     +  L   GR I  ++ + +  L     ++ +           LT
Sbjct: 125 YGYMN-HCRGADSVTSVCTLGEGGRAISAEQKYLMSSLMPVLHSVARGLKFC---SRGLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 181 HRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|329849532|ref|ZP_08264378.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328841443|gb|EGF91013.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 236

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 13/227 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T+    +    D L     L  ++     +  +      +H +           LD  + 
Sbjct: 15  TAARYRVLIVEDNLLFRHYLADSLLAAPEVTVIGAVGRVAHAVAFAEQAPDLVLLDLGLP 74

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +++  +                 L   VF      +       + Y         
Sbjct: 75  DGGGLEVIAAIREKA--------PACKFLVITVFEDRASVLKTLRAGADGYVLKDATSEH 126

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +         I       +  ++                   L  RE E L  I++
Sbjct: 127 LVSYVRSALAGVNPISSRAARHLLKISDEG-----EAQPVTSSHPPLRPREKEMLEHIAQ 181

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   +A ++ +S +TV  Y  +I RK + K+R  A+  A+++ ++
Sbjct: 182 GLSQKAVARLMNLSPHTVAEYTQNIYRKLSVKSRGAAVFEAIQHKLI 228


>gi|27376305|ref|NP_767834.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349445|dbj|BAC46459.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 223

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 30/240 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                 ++V+  +       +          AR+         T  +   ++        
Sbjct: 1   MNAPSTHLVIADDHPLFRDALRQAVASVLTSARIDEAGSFEDLTKLLEQTSD-------- 52

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +     F  +     ++      V+   ++    +  +L      
Sbjct: 53  ------VDLILLDLSMPGISGFSGL-IYLRAQYPAIPVVIVSASDDSATIRRSLDF---- 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +    F V  +R  ++ +      +  D            A           +
Sbjct: 102 ---GASGFIPKRFGVETLRDAILKVMEGDVWVPADT--------DLSAATDPDMTRLRDR 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A R
Sbjct: 151 LVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210


>gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + +  + + +  L  +           R  A               +
Sbjct: 2   IRIMLVDDHPIVRAGLRAVLSTAPDLDVVAEAGTAAEAIDRAEA---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +     A             P  L    + +  + +   +   
Sbjct: 47  RLDVVLMDLRLHGTEAHEADGVYATQAIRALA---DPPRVLILTTYESDADIVRAVSAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +        ++      ++                       LT
Sbjct: 104 IGYLLKDAAPETLIAAIRSAAAGETVLGPAVAAKL-------------LTRVTDTRPSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  +  G T+ EIA  L IS  TV +++  I  K    +RS  +A A +  ++
Sbjct: 151 ARELEVVVLLDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVTSRSKVVATARQRGLI 209


>gi|326778212|ref|ZP_08237477.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326658545|gb|EGE43391.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 67/242 (27%), Gaps = 32/242 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +    +  +           R+ A            
Sbjct: 9   EDGKITVFLLDDHEVVRRGVHELLSVEADIEVVGEAGTAADALARIPAT----------- 57

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   +++           L    +          
Sbjct: 58  ----RPDVAVLDVRLPDGSGVEVCREVRSQDENIKC--------LMLTSYADDEALFDAI 105

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WG 181
               + Y         +   +  +     ++                   +         
Sbjct: 106 MAGASGYVLKAIRGNELLNAVRDVAAGKSLLDPVATAR-------VLERLRDGGSGKGDD 158

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 159 KLAGLTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVA 218

Query: 242 RN 243
           R 
Sbjct: 219 RL 220


>gi|92112994|ref|YP_572922.1| two component LuxR family transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91796084|gb|ABE58223.1| two component transcriptional regulator, LuxR family
           [Chromohalobacter salexigens DSM 3043]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 20/220 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R+ L   +  +              + + A+  +++R        LD  +     
Sbjct: 12  DHPLFRAALNQALRQVAPQAEIVE-----ADTMEATTDMVLRHPDADLILLDLHMPGAHG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  + L  +     V+        PV               + +   +  +  I   
Sbjct: 67  FSGL--IQLRGQSPEVPVVVISGSEEPPVVRR------AIDYGASGFIPKSSSLDVIAEA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  + + +I   +  +   F            LT ++   L  ++EG  +
Sbjct: 119 IRQVLEGEVWL-PEEMVDILGESNEEEARFAEAIAS------LTPQQFRVLNMLNEGLLN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  L +S  T+  ++ +I+RK    +R+ A+  A + 
Sbjct: 172 KQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKL 211


>gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 213

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 16/189 (8%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A    L+  +      LD  +      +                 +              
Sbjct: 36  ADTLALLERESVDLVMLDYSMPGMNGVE--------GIPTAIAAARGTPVAIMSGVADDD 87

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                 A     +   T +       + L+   G  +  +             +   +  
Sbjct: 88  AVRACIAAGARGFLPKTLESRVFIQAVGLVGAGGTYVPAEFAA--------LPSKPAAPA 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE+E L  I  G ++ EIA  L +   T+  ++  I +K   K RS A 
Sbjct: 140 TPTLDPSLFTSREMEVLALIVAGASNKEIARQLDLQEVTIKLHLTRIFQKLGVKNRSHAA 199

Query: 238 AYAVRNNIV 246
             AVR  +V
Sbjct: 200 VTAVRGGLV 208


>gi|167566149|ref|ZP_02359065.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
 gi|167575074|ref|ZP_02367948.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 17/218 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
                    +   ++       + E   G S   L R        L  ++      +L++
Sbjct: 8   DAHPVLRNGVRIALANAGGFEVVGEAGDGESTLALARATNAHVLTLGLVMPGTHGIELIK 67

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            + +                   ++      +       + + + +   + +   +  + 
Sbjct: 68  LIKIGN--------PSLRVFVLTMYSEETFAVQACRAGASGFVTKSDSNSELIAAIRKVA 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +       + L                     L+GRE + +  ++ G+   +IA 
Sbjct: 120 LGGVYVSAAVAERLAL--------SVHEQDRALPHQRLSGREFDVMCRLASGQPVRDIAR 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV+ Y   I  K      +  + YA+R+ ++
Sbjct: 172 TLYVSAKTVSTYRTHICEKMGVPHDAALVRYAIRHKLI 209


>gi|256830668|ref|YP_003159396.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579844|gb|ACU90980.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 335

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-QE 71
            +        V   P  +DLLA                 L++  G S           + 
Sbjct: 117 GQAGPAMLGIVGDDPLLNDLLA---------------ARLSQETGVSCSHSPSLPRILET 161

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            + D  +       +   +  +   +    +     LF        E     +G+     
Sbjct: 162 ARPDLTLLDCTGMSMEELLREAN-GEDSPFMSTSVALFNVPEDRSLELEAINSGI-RGIF 219

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +  G+  +        R+ +    L      N             +L+ RE 
Sbjct: 220 FRNSPFKLMVKGVSAMLDNELWFSREAMSAFLLGKQ---NRPAELSAPENGQADLSQREQ 276

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E L  ++ G T+ +IA  L +S NTV ++I +I +K     R  A  +A R+
Sbjct: 277 EILLMLAAGATNKDIAQKLFLSLNTVKSHIYNIYKKIDVPNRLQASLWAARH 328


>gi|239817077|ref|YP_002945987.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803654|gb|ACS20721.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    S  + +    E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLRQFFSEHVDLRVAGEAASGREAIELVRTTELDVLVMDLSMPGQSGIDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        +       + Y +   D   I   +  +
Sbjct: 67  AMIRAK-----APDVGILILSGYP---EEHYAMNLIRQGASGYLNKECDPMEIVNAIRTI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I       +                      +L+ RE +    +++G+T+ +IA
Sbjct: 119 SLGRRYITPAVAELLA--------RQLDRKDDAAPHEQLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 171 KTLSLSVKTVSTYRTRLMEKMNLSSNSDLTYYALKNKLI 209


>gi|220920878|ref|YP_002496179.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945484|gb|ACL55876.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 232

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++          V HL      L+ +                    GA    L    
Sbjct: 9   TRVLVADAHPLLLRGVQHLLRHEPDLSIIGEA---------------ISGAQALRLASDL 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ + +A                +               A   
Sbjct: 54  QPDIAILDVALPGLHGSEIRQRLAERA--------AGTRVIILSGTEEPICAQRALAAGV 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +   G  +      ++       A      D   G    LT
Sbjct: 106 CGYVLKRSAPETLLHAIRAVRTGGLYLDPTIAGQLVPAGGPPATRTSGID---GFSASLT 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +  I+ G T+ EIA  LGI+  ++  Y      K   +TR+  + YA+    
Sbjct: 163 NREREVIRLIALGFTNKEIAGKLGITAKSIETYRTRASEKLDIRTRAKIVQYAMAQGW 220


>gi|163732202|ref|ZP_02139648.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161394500|gb|EDQ18823.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 204

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S         A +        +   M            +L    
Sbjct: 1   MRILLADDHGLVRDTISAYLEAEGRAAVIAV----EDYAEAMK-----------VLSNKG 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--PPAG 125
            F    LD  +      D +             + + P + F  +  T P  I       
Sbjct: 46  PFDLVLLDFGMPGMNGLDGLS----------DAIKKHPNQPFAILSGTAPNRIAQQAVER 95

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   +     +   +  +      +    + E G     + +              
Sbjct: 96  GAIGYLPKSMGAKSLVNAVRFMIAGETYVPASLMGESGETPETEFSRK------------ 143

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L+ +  GK++ EIA  L +   T+  ++ ++ +K   K R+ A   A    
Sbjct: 144 LSQRERQVLSGLCTGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARNAG 202


>gi|227875745|ref|ZP_03993873.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269976705|ref|ZP_06183681.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|306819021|ref|ZP_07452738.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227843687|gb|EEJ53868.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269935070|gb|EEZ91628.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|304648214|gb|EFM45522.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 8/220 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D + R + +D          A     G +     +    +   LD  +      + 
Sbjct: 8   LVDDDGMVRRLLVDTLGREADIEIAWDVDSGEAALEAFKSGPVEILLLDLQMPGMDGIET 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +      ++     V+   T         L +           +     D   I   L  
Sbjct: 68  ITEFQRRDEPPLIVVVSALTT--------LDKVQAAFRAGAVGFFMKEDDAGLIAQSLRR 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +        +       A      + +      L+ RE++ +  ++E   + +I
Sbjct: 120 ALRGELVFSPKCSQVVVARLTGLAADAAEGEEYVKSHGILSERELQVVRLVAEALENKQI 179

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++ SIM K  T  R+G +A A R  ++
Sbjct: 180 ASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 219


>gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 241

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 18/229 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
             ++       +    + A     G              +     V + +P   V    L
Sbjct: 14  FEQIKAAANVDAAIRILQA---EYGLGFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLL 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRI 142
           +   K   ++++  E   P   +  E                   N Y     D A+ R 
Sbjct: 71  NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 130

Query: 143 GLMLLFP----KGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWI 197
            L +       +   ++R    E   +A                    L+ RE+ECL W 
Sbjct: 131 LLSVNARIPVEEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLHWT 190

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 191 ALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|126658803|ref|ZP_01729947.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126619901|gb|EAZ90626.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 224

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +       A+T   G   F LV+         D  +     + 
Sbjct: 5   ILVADDDLGIRVAVKDYLEMHGYA-AITAQNGEDAFSLVQTYRPHLLVSDIKMPYKDGYT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+ +            +    +F     T  E I       + Y    F++  ++  + 
Sbjct: 64  LVKELRQL------PEFRLLPVVFLTECDTTEERIQGYQVGCDVYLPKPFEMEELKAVIR 117

Query: 146 LLFPKGRIILRDRLW-----EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            L  + +II  +  +     +       Q    K       +  +LT RE E L  ++ G
Sbjct: 118 NLLERSQIIQSEWRFSQEQSQTQKNLQQQQEAAKISIQAEMEFLDLTRRESEVLDLLTTG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EI   L +S  T+  Y++S++RKT T  R+  + +A+ +++V
Sbjct: 178 LSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDHHLV 223


>gi|290955145|ref|YP_003486327.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644671|emb|CBG67756.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 219

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 68/218 (31%), Gaps = 11/218 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D           +  +  +  +    G+     VR +      LD  +       ++R
Sbjct: 3   VDDEALVRSGFGLILGASDDIEVVATASGSGAVETVRRERPDVVLLDIRMPDVDGLTVLR 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                       V+          F      +T        +     +  ++   +  L 
Sbjct: 63  ---ELRTMPDAPVVA-----MLTTFDADEYILTALHSGAAGFLLKDTEPDQLAHLVRTLA 114

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G ++          L    +    + D    +   LT RE + L  ++EG ++ +I  
Sbjct: 115 AGGVVLSPKASR---TLLHSHSGSASAVDEDATRVRLLTSRERDVLVLVAEGLSNADIGA 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +   TV +++++I+ K    +R  A   A R  ++
Sbjct: 172 RIHLGAGTVKDHVSAILTKLRVTSRVQAALLAQRAGLL 209


>gi|253996281|ref|YP_003048345.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253982960|gb|ACT47818.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 216

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 71/246 (28%), Gaps = 31/246 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  +  ++ +++  +     + +  + + ++ +  +                        
Sbjct: 1   MMSKKPKIKVIIADDHAILRAGLKQILSETEDILVIAEAQNANEAIK------------- 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          LD  +      + ++ +                 L   +       I
Sbjct: 48  --LGSQPEADVLLLDISLPDRSGMEALKYIKRENSHI--------AVLMLSMHREDEYAI 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y       + +   +  +    + I  +      +LA          D   
Sbjct: 98  RALKSGAAGYLCKQSASSELVNAIQTVARGKKYITPEVA---EILANQIGR-----DDQK 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE +    I+ G +  ++A  L +S  TV+ Y A ++ K   K  +    YA
Sbjct: 150 APHELLSDREYQTFIMIASGLSVTDVANKLSLSVKTVSMYRARLLEKMQLKHNAELTHYA 209

Query: 241 VRNNIV 246
            ++N+V
Sbjct: 210 FKHNLV 215


>gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu]
          Length = 275

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 62/214 (28%), Gaps = 20/214 (9%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
             D           L   +G  +   V               S++P             +
Sbjct: 52  RADNPQVLLDVALPLARDLGFQYVGYVISTSLPVSSPRRQSISNFPAAWREWERTRSTLE 111

Query: 98  YYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              +++R      P+           L       AG+ + +  L  D       L L   
Sbjct: 112 CNPIIRRCRASVRPLVWDDASFDSAPLFRTALGRAGVRSGWSQLVRDSRGSWGVLTL--- 168

Query: 150 KGRIILRDRLWE---------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                                +  +  Y  +         G +  LT  E   L W  +G
Sbjct: 169 GRTAPHPASCRPYDVEPRLVWLAQMFHYHLSRMCRTGPVGGNEIHLTEMEKTILRWTVDG 228

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           KTS E+A IL +S  TVN ++ +I+ K  T  ++
Sbjct: 229 KTSGELATILEVSVRTVNFHVQNILMKMNTCNKT 262


>gi|118602974|ref|YP_904189.1| two component LuxR family transcriptional regulator [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567913|gb|ABL02718.1| two component transcriptional regulator, LuxR family [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 209

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 14/172 (8%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++++ +          ++               +         
Sbjct: 44  SVDIILLDLRMPQMSGLEVLKTLKEKNITT--PIV------MLTTSTQEYDLRNCLKHGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   L  +     ++ +D      +LA    +     +  +     LT
Sbjct: 96  QGYLLKDMDPDELVDALNEVVKGSIVVAQDMT---YILAKALRDELTDNEPSFDS---LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    +S G ++  IA  LGIS  TV  ++ SI++K +  +R      
Sbjct: 150 SREKEVACQVSSGYSNKVIARELGISDGTVKLHVKSILKKLSLSSRVEVAVM 201


>gi|50841898|ref|YP_055125.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
 gi|50839500|gb|AAT82167.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
          Length = 206

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 61/235 (25%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +          E VG          L Q+
Sbjct: 1   MIDKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGRGDEVVG----------LVQD 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +       L      +E             L    F                + 
Sbjct: 51  TYADVCLLDIEMPGLDGITVAAELRDQAP---WCRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+GRE 
Sbjct: 108 VKDTPAEVLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSGRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R   +
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206


>gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284]
          Length = 201

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 61/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S +S L    D L  +            +   +              
Sbjct: 2   ITLFLAEDQSMLNSALSQLLDLEDNLKVVGTASDGQMAWEMIQKQS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       + + +   +             +    F              
Sbjct: 48  -PDVAILDIEMPRLTGLAVAQRIHEEKLP--------TRVVILTTFARQTYFEQAVQAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     I     +  +                   +   LT
Sbjct: 99  AAYLLKDSPSEELIGAINQVMTGKIIYDPALVQSV----------------LSTEQSPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   + G  + EIA  L +S  T+ NY+++I  K   + R  A+  A  N  +
Sbjct: 143 KRETEVLKVAASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAVELAQNNRWI 201


>gi|238025567|ref|YP_002909799.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237880232|gb|ACR32564.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           glumae BGR1]
          Length = 226

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 60/226 (26%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +                + +      L          +D  
Sbjct: 22  ARLLLVDDHPLVRDGLKMRLEAVPGFVVAGEAGNAADAL-----ALAGTLKPDLALMDVG 76

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L               ++            +           + Y       
Sbjct: 77  MQGMNGIALAAAFHERF-----PAIRVVMLSM---HDNVEYVTQAVRAGASGYLLKDSPA 128

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + I  G++ +                      A          G    LT RE + L  +
Sbjct: 129 SEIIRGIVAVLAGQTFFSEG-----------LAARMIQASAGAGPLERLTPRERDILDAL 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +EG +S +IA+  G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 178 AEGLSSKQIALHNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 223


>gi|229002577|ref|ZP_04160624.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
 gi|229003799|ref|ZP_04161608.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228757400|gb|EEM06636.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock1-4]
 gi|228758504|gb|EEM07644.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           Rock3-17]
          Length = 201

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 16/202 (7%)

Query: 46  TMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              +  + E   G     L          LD  +       ++  + L          ++
Sbjct: 12  RPSLKVVGEASDGLEALRLYDILRPDILILDISLPRLDGIQVLTEIKLR--------YEQ 63

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +   +               + Y         +   +  +      +    +  +  
Sbjct: 64  AKVIVLTMHEDEDYITLIMNAGASGYVPKAAVDEELYTAIDSVMDGYLYLRPKEISTM-- 121

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                    ++          L+ RE E L ++ +G +  EIA  L IS  TV+ +   +
Sbjct: 122 -----LKRLQNETESRNPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRM 176

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K     +S  + YA++ N++
Sbjct: 177 LNKLNLSKKSELVQYAIKYNLI 198


>gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 199

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++     V   ++        GA    ++  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLSFQPDVETVLQAKN-----GAEAIEVLGKEAVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  +           + +   +    F              + Y      +
Sbjct: 56  MPVKTGLEALEWIKQE--------VPKTKVVIVTTFKRPGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V       LT +EV  L  +
Sbjct: 108 AELMQTLHTVLEGRKEYSPELM-----------------EVMMTHPNPLTEQEVAVLHGV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A     +
Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYMTNILSKLGASNRTEAAKTAEEEGWL 199


>gi|212635220|ref|YP_002311745.1| response regulator [Shewanella piezotolerans WP3]
 gi|212556704|gb|ACJ29158.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Shewanella piezotolerans WP3]
          Length = 196

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 68/224 (30%), Gaps = 28/224 (12%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +S +    D L     +   +    ++ A+ +  G     LV+    +    D  +    
Sbjct: 1   MSRIIIADDHLIVAQGIAGLLKAEHQVLAIAKD-GEELVELVKQHDPELVITDISMPGMT 59

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               V  +          + +    +   +           A     Y         +  
Sbjct: 60  GIAAVAALKR--------IKKDLRVICLTMHDEQEYAEGAIAAGALGYVLKHEATDDLVD 111

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    + + +                             L+ R++  L  +++GK+
Sbjct: 112 AVNSVLAGKQYLSKSV-------------------QVEDSAPTLSARQLSVLRLLAQGKS 152

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++A  L IS  TV  +  SIM+    K+ +  I YA+   +V
Sbjct: 153 AKQVADALFISPRTVEFHKYSIMKLIEAKSSAELIQYALSRGLV 196


>gi|282853480|ref|ZP_06262817.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582933|gb|EFB88313.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922223|gb|EFS86054.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965305|gb|EFT09404.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|315104424|gb|EFT76400.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329402|gb|EGE71162.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1]
          Length = 206

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 57/235 (24%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +             G     LV+      
Sbjct: 1   MVNKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGR-----GDEVIGLVQDTDADV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +       +   +                 L    F                + 
Sbjct: 56  CLLDIEMPGLDGITVAAELREQAPW--------CRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+ RE 
Sbjct: 108 VKDTPAEDLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSDRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A     +
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARHRGWL 206


>gi|307700360|ref|ZP_07637400.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614571|gb|EFN93800.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 217

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 8/220 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D + R + +D          A     G +     +    +   LD  +      + 
Sbjct: 5   LVDDDGMVRRLLVDTLGREADIEIAWDVDSGEAALEAFKSGPVEILLLDLQMPGMDGIET 64

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +      ++     V+   T         L +           +     D   I   L  
Sbjct: 65  ITEFQRRDEPPLIVVVSALTT--------LDKVQAAFRAGAVGFFMKEDDAGLIAQSLRR 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +        +       A      + +      L+ RE++ +  ++E   + +I
Sbjct: 117 ALRGELVFSPKCSQVVVARLTGLAADAAEGEEYVKSHGILSERELQVVRLVAEALENKQI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV  ++ SIM K  T  R+G +A A R  ++
Sbjct: 177 ASELDISVATVKKHVQSIMDKLGTDNRAGIVAKAFRAGLL 216


>gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 234

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 63/215 (29%), Gaps = 13/215 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   +     +             L R        +D  +      +
Sbjct: 8   VLVVDDDALVRDGLRRILESADDIRVPAVCGPGEALALARRHRPDVALVDLHMPGTDGIE 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++R +  S         + P       F                +      V  +  G+ 
Sbjct: 68  VLRGLRASA--------RPPRVAVLTGFGEDEHVRRALRAGAAGFLLKDSAVDELIPGVR 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           LL   G  +    +  +   A  +A               LT RE E L  +  G +++E
Sbjct: 120 LLAAGGSALSERVVRSLPDGAGKEAAPADPPGARL-----LTAREREVLELLPSGMSNEE 174

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           I   L +SR TV ++++S++ K     R  A   A
Sbjct: 175 IGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209


>gi|302525783|ref|ZP_07278125.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302434678|gb|EFL06494.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 221

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 72/244 (29%), Gaps = 29/244 (11%)

Query: 7   QVNIVLNREDEQRTSFV--SHLPTRSDLLARMI--PLDCTVSWTMRMYALTEYVGASHFL 62
             ++V +  +E  +  V   H   R  + AR+                A           
Sbjct: 2   PASMVPHPREELFSVLVVDDHPLLREAIAARLAQMGAGTVHEAATVAEARARAQ------ 55

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      +LV  +           +        P         + 
Sbjct: 56  --ATGPCDLAILDLGLPDGSGIELVTELRSHGW----PRVVVLASSDDPYA-----VRSA 104

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   +     +  G+  +   G          +                    
Sbjct: 105 FQAGAQAYLLKSASPVVVTDGVRRVLEGGVYADPSVAPVLAT--------GTRVAGTDNT 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A+R
Sbjct: 157 PRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAMR 216

Query: 243 NNIV 246
             ++
Sbjct: 217 AGVI 220


>gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 78/243 (32%), Gaps = 21/243 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++           
Sbjct: 4   AMTESATRGLLIQQMVSTITELDGQTAIENALEWLRRECNSERAMFFQFKGPVLLTF--- 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------------FCPVFHTLPENITPP 123
           ++S+            +      V++                       +  L +     
Sbjct: 61  ITSNVDHAWGEAYRQHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVSAFYDELVDACELL 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   Y +     A     +  L    R I  ++ + +  L     ++ +         
Sbjct: 121 PAISYGYTN-HCRGADSVTSVCTLGEVARTISAEQKYLMSSLMPVLHSVARGLKF---SS 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+  
Sbjct: 177 RGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCR 236

Query: 244 NIV 246
            ++
Sbjct: 237 GLI 239


>gi|297563338|ref|YP_003682312.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847786|gb|ADH69806.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 232

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 71/246 (28%), Gaps = 24/246 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   +++ +VL  +D      +  +   +  +  +   +                G++ 
Sbjct: 7   MSETEREIGVVLVDDDALVRVGLVMMMGGAPDIRVLAEAED---------------GSAV 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV         +D  + +         +   E             L    F      +
Sbjct: 52  VDLVARHSPDVVLMDIRMPTVDGLTATERLRALEDPPE--------VLVLTTFDADEHVL 103

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +       A I   +  +     ++       +        +  +      
Sbjct: 104 RALRAGAAGFLLKDTPPAEIVESVRQVSRGMSVLSPAVTRRLVERVG-ANDRGERALRAR 162

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L GRE+E    + EG+++ +IA  L +S  TV  +++SI+ K     R       
Sbjct: 163 ERLSALNGRELEVAVAVGEGRSNADIASALFLSVPTVKTHVSSILTKLGLNNRVQVALLV 222

Query: 241 VRNNIV 246
               ++
Sbjct: 223 HDAQLL 228


>gi|296158426|ref|ZP_06841257.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295891370|gb|EFG71157.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 210

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V+    M    E   G     LVR   F    LD  +     
Sbjct: 3   RVLIADDHAIVRGGFRQFVADEPDMCVAAEAATGDETISLVREQAFDVVLLDIAMPDKNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +R +     ++          L    +      I       N Y +   +   I   
Sbjct: 63  IDTLRVIKQVRPNQG--------VLILSGYPESQYAINLLRAGANGYLNKDCEPDEIVRA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +       +                       L+ RE +    ++ G+  
Sbjct: 115 IRAVARGHRYLSEALADTLA--------DNLDKPAVGRPHEALSEREFQIFCKLAAGQIP 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV+ Y A ++ K      +    YA++N ++
Sbjct: 167 TEIAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|218672704|ref|ZP_03522373.1| probable two-component response regulator protein [Rhizobium etli
           GR56]
          Length = 207

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 62/240 (25%), Gaps = 35/240 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSH-LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +  + + +  +       V+  L   SD +                            ++
Sbjct: 1   MTAITVGVVDDHPLFREGVTRSLSEMSDFVVIGEGASSE----------------DAAMI 44

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +      LD  +       +   +       +    +        V   +   +   
Sbjct: 45  ASNNRPDVMLLDVSMPGGGLAAISDVLE------HSPATKVLM---LTVSEEVDTLLGAL 95

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   +  +    R I      ++         M  S +      
Sbjct: 96  QRGAMGYVLKGVGSRGLAEAIQTVLSGSRYISPTMSAKV---------MENSLNGAASDK 146

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A       
Sbjct: 147 NGLTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAALQWRER 206


>gi|89894764|ref|YP_518251.1| hypothetical protein DSY2018 [Desulfitobacterium hafniense Y51]
 gi|89334212|dbj|BAE83807.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 65/235 (27%), Gaps = 33/235 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     V  L +    +     +            ++              
Sbjct: 20  IKVLVVDDHKLFALGVLALLSSEPDIVVTDVVSNAEECLRMAEIVS-------------- 65

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +      +    +             +       A   
Sbjct: 66  -PHTVLLDINLPDSCGVDMISKI-----KQIDPDIGIVMLTGLSPLGHI---DASLAQGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKDF 184
           + +         +   +           +        +A Y           D H  K  
Sbjct: 117 SGFLLKDCTKEEMVTAIRKAARGESYFSQS-------MAPYLKEELVGTPQQDPHDDKMA 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT REVE L  +  G  S EIA  L I++ TV+ +I +I+ K   K+R   +  
Sbjct: 170 LLTSREVEILKLVVTGLRSKEIAENLRITKRTVDYHIGNILLKLEVKSRMEIVLK 224


>gi|23015018|ref|ZP_00054808.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 216

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L   +     +  + E   G+     +         LD  +     
Sbjct: 4   HVMLADDHRMFREALRVPLEAESDLEIVAETSTGSDTLAALENVRPDVLVLDIALPDING 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R                   +    F              + Y   +     +   
Sbjct: 64  IEVARAALKRH--------PGLQVVALSGFADRIYIEEMLKAGAHGYVVKSAGADELVSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  D    +        ++             L  RE E L  ++ GK S
Sbjct: 116 IRAVAAGRSFLSPDVTHTM------LRHVQPGEISAAPPPSVLGKREREVLGLLASGKRS 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +LGI+  TV  +  +I +K      +    YAV   ++
Sbjct: 170 SEIASLLGIAVATVEVHRRNIKQKLKLSGTADLTRYAVHEGLI 212


>gi|320161120|ref|YP_004174344.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994973|dbj|BAJ63744.1| putative NarL family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 355

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 73/235 (31%), Gaps = 35/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   ++L  + E   + +  +    + +  +  +    +    +               
Sbjct: 1   MKPFRVLLADDHEVVRAGIRRVLEEIENIQVVAEVGDGKTLQQEIAR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                  Q  D I+      D     A+      Y  L+         +          +
Sbjct: 48  -------QLPDLILIDVTMPDFDPISAIHSIRLNYPTLKILVVS---AYDDNVYVQGLLS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      +  +++ +  +      I         L+      +  S         
Sbjct: 98  AGVHGYHLKDQPLNDLKLAVQRVLSGDHWISS------PLIGKLVHALSNSSIP------ 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT R+ E L ++ EGK + +IA + G+S  T+ N++  + R    ++R  A+ Y
Sbjct: 146 GLTPRQQEILLYLWEGKDNQQIARLTGLSVKTIENHLTRLYRLLNVQSRLEAVNY 200


>gi|318076428|ref|ZP_07983760.1| two component system response regulator [Streptomyces sp. SA3_actF]
 gi|333026664|ref|ZP_08454728.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746516|gb|EGJ76957.1| putative two component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 209

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 14/218 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D  A   PL   +     +  +     G      V         +D  +      +  
Sbjct: 4   ADDQAAVREPLAAVLGLAEDIDVVAAAADGNGVLEAVAAGPVDVVLMDLRMPVLDGIETT 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           R ++                +    F      +         Y +       I   +   
Sbjct: 64  RRLSEEH--------PGVAVVVLTTFADDDSILAALGAGARGYLTKNAGRQDIVRAIRAA 115

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++ R+    +           +      G   +LT RE E LT I +G  +  IA
Sbjct: 116 AAGQSVLDREVQDRL-----LATVRARPTASGQGLPADLTPREREVLTLIGQGLPNRAIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S  TV  +I ++  K   + R+ A+  A+   +
Sbjct: 171 EKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 208


>gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum
           gilvum SL003B-26A1]
 gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum
           gilvum SL003B-26A1]
          Length = 232

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 63/222 (28%), Gaps = 11/222 (4%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQKLDSIVSSDWPF 84
                +  ++  D   +    + AL    G        L       + +   I+      
Sbjct: 17  PAGAPVRVLLIEDDAPTRAHILAALDGDAGFTVKEGGTLSEGLAGLDWQPRVILCDLNLP 76

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D      + E  +    +                 ++        Y         I   +
Sbjct: 77  DGTGIALIREARRRLPEVDIMVVSVM---ADEASVLSAIRVGAMGYILKDAFPNDIAAAV 133

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L      I       I   A        + D        LT RE + L  I++G    
Sbjct: 134 HDLVRGHSPISASIARYIVRNA-----QLPAGDEPCEPAIRLTPREADILWGIAKGYRYA 188

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LGIS  TV  YI +I RK     R  A+  AV+  ++
Sbjct: 189 EIAAQLGISPQTVTGYIKTIYRKLHVTNRGEAVFEAVQQGLI 230


>gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional
           regulator vjbR
          Length = 259

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 21  QSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLITLPATWVARYSSKNYFA 80

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 81  IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 138

Query: 151 ----------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                               L      +  LA                   LT REV+CL
Sbjct: 139 GVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCL 198

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 199 RWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 250


>gi|114777603|ref|ZP_01452584.1| regulatory protein, LuxR:Response regulator receiver [Mariprofundus
           ferrooxydans PV-1]
 gi|114552074|gb|EAU54591.1| regulatory protein, LuxR:Response regulator receiver [Mariprofundus
           ferrooxydans PV-1]
          Length = 217

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E       +L    DL+  +                               
Sbjct: 7   ITVQLVDDHEVVRIGFRYLLEADDLMQVVAESASGKQACRDYEKWL-------------- 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +++R + L+         +                        
Sbjct: 53  -PDIVIMDISLPDISGLEVMRRILLAH-----PEARILMLSMHSGMV----AERAMQMGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    R +  +   ++ LL     +  ++          LT
Sbjct: 103 RGFVCKRSGARLLISAIHEVMAGRRYLDDETGVQLPLL----HSASETLKPLPSS---LT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G++  +IA  L +S  TV ++   IM K    T +  +  A R  I+
Sbjct: 156 RRELEVCLLLTDGRSVSDIAAALHLSEKTVYSHRQHIMEKLGVATMAELVQVATRMGIL 214


>gi|74317606|ref|YP_315346.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057101|gb|AAZ97541.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 215

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +    D +      DC+                        + 
Sbjct: 8   RILIVDDHAIVREGLKQILAEVDDVKVGGEADCSSGALRMARQ---------------EA 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           +    +D  +      + +  +           ++                +        
Sbjct: 53  WDLVLMDISMPDRGGLETLELLKKEH-----PGIKVLMLSM---HRETQFAVRALKSGAA 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +     A +   + L+    + I  +   E+            S +        L+ 
Sbjct: 105 GYLNKQSAPAELLDAIRLVASGKKYISSEVAQELA--------SQVSGERDGLPHESLSN 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  I+ G T   IA  L +S  TV+ Y   ++ K   K  +    YA+++ ++
Sbjct: 157 REYQTLCMIASGLTVSGIADKLALSVKTVSMYRGRVLAKMQLKNNAELTHYAIKHGLL 214


>gi|319795269|ref|YP_004156909.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597732|gb|ADU38798.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 66/228 (28%), Gaps = 22/228 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R   V   P   D L   +     +       +     GA    L+         +D
Sbjct: 16  RPIRLFLVDDHPLVRDGLRARLGAMPNLEIVGEAGS-----GAEALALLDTLRCDLMLVD 70

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      DL   +   ++   +             +                Y     
Sbjct: 71  VGMKDMNGIDLAALVLQRDQQPSHPAPHIVMLSM---YDNPEYVQKAMQVGARGYVLKDA 127

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A I   +  +   G  +      ++                +      LT RE E LT
Sbjct: 128 PAAEIVAAIEAVSAGGTFLSPAVSKKLF--------------RNQAPRPLLTPRESEILT 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +  G++S +IA  LG+S  TV  +  SI R+   + ++  I YAV +
Sbjct: 174 ALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELIKYAVEH 221


>gi|229821170|ref|YP_002882696.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229567083|gb|ACQ80934.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 223

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 8/220 (3%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +     +  + E   GA     V         +D  +   
Sbjct: 1   MTRVLLVDDDPLVRAGLRLMLESAGDLDVVGEVGDGAEVVDAVARWAPDVVLMDIRMPVL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +              P  L    F      +         Y       A I 
Sbjct: 61  DGIAATRALV-------DRPGATPAVLVLTTFGADRTVVDALRAGAAGYVLKDTPPAEIV 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++       +  +A    +  ++          LT RE +    +++G 
Sbjct: 114 EAVRRVAAGEAVLSPAVTRSLIDVATAADSEPEAGAAARRSLAALTERERDVADAVADGL 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++ EIA  L +S ++V  +++S + K     R      A 
Sbjct: 174 SNGEIAARLYLSTSSVKTHLSSALTKLGLVNRVQLAILAH 213


>gi|255324096|ref|ZP_05365220.1| response regulator, two-component system [Corynebacterium
           tuberculostearicum SK141]
 gi|255298797|gb|EET78090.1| response regulator, two-component system [Corynebacterium
           tuberculostearicum SK141]
          Length = 212

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 67/244 (27%), Gaps = 38/244 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   ++ +                    + VG          
Sbjct: 2   IRVLLADDHEIVRLGLRSVLEGAEDI--------------------DVVGEVATAEAAVS 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL-----FCPVFHTLPENITP 122
             Q   +D I+        V    +    +    ++              + T  + +  
Sbjct: 42  AAQAGGIDVILMDLRFGAGVEGTRVMGGAEATAQIRSAMATPPKVLVVTNYDTDADILGA 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +         +       +                    
Sbjct: 102 IEAGAVGYLLKDAPPHELLAAVRSTAEGDSALSPIVADRL-------------MTRVRTP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  ++ G ++ +I   L +S  TV +++  I  K   ++R+ A+A A  
Sbjct: 149 RTSLTPRELEVLQLVAAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAARE 208

Query: 243 NNIV 246
             ++
Sbjct: 209 QGVL 212


>gi|238024634|ref|YP_002908866.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Burkholderia glumae BGR1]
 gi|237879299|gb|ACR31631.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Burkholderia glumae BGR1]
          Length = 214

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L   +          E    AS   L+R    Q   LD  +     
Sbjct: 3   HVLIADDHALVRDGLRHILRDATGFEVAGEAYDSASTIALIRATPAQVLVLDLSMPGRNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+R +   +             L   +       +       + Y +     A +   
Sbjct: 63  VELIRQIKDEKPT--------LRILVLTMHAEQQYALRAFRAGASGYLTKESASAELVGA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +               A+              L+ RE +    I+ G+T 
Sbjct: 115 VAKVASGGVYVSLSMAERFAQSLNEPADTL--------PHQRLSDREFDVFRRIAAGQTL 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV+ Y   I+ K      +  + YA+R+ ++
Sbjct: 167 TEIANALCVSAKTVSTYKTRILEKMQMPHEAALVRYALRHRLI 209


>gi|253996438|ref|YP_003048502.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983117|gb|ACT47975.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 213

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I ++ ++L  +     S +  L      +  +   D                G     L 
Sbjct: 2   ITKIRVILVDDHNVVRSGLRRLLELGGDIEVVAEADS---------------GEQACQLY 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + +R +            +                    A
Sbjct: 47  TEFPADVMVMDISMPGLGGLEALRRILQ-----RDPSAKIVIFTM---HQNTAFATQALA 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   +     + + +         I  +   +I +         +S         
Sbjct: 99  AGAKCYVLKSGLADDLLLAVREANSGKTYISPNIAQKIVM---------QSLAGAADPTE 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E    ++EG   D+IA++L +S+ TV NY   + +K         +  A+R  
Sbjct: 150 RLSAREFEVFRLLAEGSGVDDIALMLNVSQKTVANYQTILKQKLGITNAVELVRLAIRYG 209

Query: 245 IV 246
           ++
Sbjct: 210 VI 211


>gi|167579450|ref|ZP_02372324.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 218

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L     +   ++  +                G     +V   
Sbjct: 3   LQILLVDDHAIVRQGIRQLLIDRGIAREVVEAE---------------CGGDALAIVEKG 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 48  EFDVVLLDISLPDMNGIEVLKRLKRR--------LPRTPVLMFSMYREDQFAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMVSAISQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMIASGKRLTDIAHALSLSVKTVSVYRTRLLEKMKLSNNAELTFYVMSNRLV 210


>gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 217

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + E     + H+  + +    ++             +                
Sbjct: 1   MKILIADDHELFREGLRHVLGQLEDNVEVVEAGDFPQAFALAES--------------HP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +      +   V+                 +       
Sbjct: 47  DTDIVLLDLNMPGAQWDDGLTRLRAILPGEVPVVV-------LSAADDRRSVLQAVEIGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   L L+   G  +    +          +       +       LT
Sbjct: 100 AGFIPKTSSSRVMLSALKLVLSGGVYLPPALIERSTPRGEGLSPAVVEQAMSI-----LT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            R+ E L  + EGK++ EIA IL ++  TV  ++ +I++      R+ A+  A +  +
Sbjct: 155 PRQREVLGLLGEGKSNKEIARILELAEGTVKLHVTAILKALNVNNRTRAVVAAAQMGL 212


>gi|332304832|ref|YP_004432683.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172161|gb|AEE21415.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 209

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 69/246 (28%), Gaps = 37/246 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    + +NI+L  +     + ++ +    D L  +            M +         
Sbjct: 1   MMDNKKAINILLAEDQTMLRNALATILDLEDNLQVVHSCATGKLALEYMQS--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      +L + +  ++         R   +    F       
Sbjct: 52  ---DDGAKVDIVLSDIEMPDMTGLELAQHLYEAK--------ARSHTIILTTFARSGYLR 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +   G  I  + +                    W
Sbjct: 101 RAMDSGVKGYLLKDSPSHELIAAIHKVHQGGAAIAPELMV-----------------GSW 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT +E   L    +G ++++IA  L +S  TV NY++S   K   K R  A   A
Sbjct: 144 MEKDPLTDKERRALRLAKDGLSTEDIASKLFLSTGTVRNYLSSASNKLNAKNRIEAARIA 203

Query: 241 VRNNIV 246
            +N  +
Sbjct: 204 HQNGWL 209


>gi|171058465|ref|YP_001790814.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775910|gb|ACB34049.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 214

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 58/236 (24%), Gaps = 36/236 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +       V  L      L  +          +R+  L               
Sbjct: 1   MRIVLVDDHALVREGVRALLASQPALEVVGEAAQADEALLRVAEL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       L   +                 L   ++              
Sbjct: 46  QPDLVLMDIGMKHTNGIHLTAELQRLH--------PGLAVLMLSMYDNPEYVHQALQAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       + I   +  +   G  +        G                      L+
Sbjct: 98  RGYVLKDGPSSEIFAAIEAIGAGGNYLSTQLTRAAG-------------ARTDDPRPLLS 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  ++ G +S +IA    +S  TV  +  +I RK     ++  I YAV  
Sbjct: 145 ERESEILNGLARGLSSKQIAAQFDLSVRTVETHRQNIRRKLKIAGQAELIRYAVER 200


>gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
 gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
          Length = 210

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   + ++  GL  +      + R     +  L  Y      +  +    + ELT 
Sbjct: 98  GIFGPGDSMDKVCQGLKAIIKGDNWLSR---RLLDQLVNYYRGKEANSIIEPAIEVELTR 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 155 REIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWARRN 209


>gi|91784340|ref|YP_559546.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91688294|gb|ABE31494.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 210

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V+    M    E   G     LVR   F    LD  +     
Sbjct: 3   RVLIADDHAIVRGGFRQFVADEPDMCVAAEAATGDETISLVREQAFDVVLLDIAMPDKNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +R +     ++          L    +      I       N Y +   +   I   
Sbjct: 63  IDTLRVIKQVRPEQG--------VLILSGYPESQYAINLLRAGANGYLNKDCEPDEIVRA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +       +                       L+ RE +    ++ G+  
Sbjct: 115 IRAVARGHRYLSEAVADTLA--------DNLDKPAVGRPHEALSEREFQIFCKLAAGQIP 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV+ Y A ++ K      +    YA++N ++
Sbjct: 167 TEIAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|31792032|ref|NP_854525.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium bovis AF2122/97]
 gi|31617619|emb|CAD93729.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY
           PROTEIN NARL [Mycobacterium bovis AF2122/97]
          Length = 216

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 32/245 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N + ++V +V+  +       V    + S  +  +   D                GA+  
Sbjct: 3   NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADD---------------GAAAL 47

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L++  L     LD  +       +   +   E             L             
Sbjct: 48  ELIKAHLPDVALLDYRMPGMDGAQVPAAVRSYELP--------TRVLLISAHDEPAIVYQ 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   +         I   ++       ++    +  +   A               
Sbjct: 100 ALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPVAPV-- 154

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+
Sbjct: 155 ----LSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAM 210

Query: 242 RNNIV 246
           R  ++
Sbjct: 211 RQRLL 215


>gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 27/197 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENIT 121
           D +V SD P         +       ++        PV                  +++ 
Sbjct: 43  DIMVISDIPDYFESVYLKNRYQSIDPIIINALNRVSPVIWDETLIVNSQWTIRKITDSLR 102

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPK--GRIIL----------RDRLWEIGLLAAYQ 169
           P   + + +  +  D       L L   K     I           +  L +   +  + 
Sbjct: 103 PDYNIVSGHTFVLHDQNNYLAVLSLYVNKFLEPEIDDKVKKHRNDLQGVLIDTHEMLLHL 162

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +              L+ RE E L W S GKT  EIA +L I+ +TV  ++  I++K  
Sbjct: 163 YHEENVRTSRHDD--TLSARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLG 220

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI+ A+  NI+
Sbjct: 221 VNNAKHAISLAIELNII 237


>gi|302535507|ref|ZP_07287849.1| two-component system response regulator [Streptomyces sp. C]
 gi|302444402|gb|EFL16218.1| two-component system response regulator [Streptomyces sp. C]
          Length = 219

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +  + +  +          +R+ A            
Sbjct: 3   EDGKIKVFLLDDHEVVRRGVHELLSVEEDIEIVGEAGTAADALVRIPAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   ++D           L    F          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCREVRSQDEDIKC--------LMLTSFADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWG 181
               + Y         +   +  +     ++                   +         
Sbjct: 100 MAGASGYVLKAIRGNELLSAVRDVAAGKSLLDPVATAR-------VLERLRDGKNGKGDD 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 153 RLANLTDQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVA 212

Query: 242 RN 243
           R 
Sbjct: 213 RL 214


>gi|302539071|ref|ZP_07291413.1| two component system response regulator [Streptomyces sp. C]
 gi|302447966|gb|EFL19782.1| two component system response regulator [Streptomyces sp. C]
          Length = 230

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 10/221 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D  A   PL   ++    +  +     G      V         +D  +      
Sbjct: 18  VVVADDQAAVREPLAAVLALAGGIEVVAAAANGTEVLAAVAAGPVDVVLMDLRMPVMDGI 77

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +                 +    F      +         Y +       I   +
Sbjct: 78  ETTRRLTGEH--------PEVAVVVLTTFADDDSILGALGAGARGYLTKNAGRQDITRAI 129

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++ R+    + L             +      +LT RE E L  I +G  + 
Sbjct: 130 RAAAAGQSVLDREVQARL-LATVKTQAPPPGGPLPLPLPEDLTRREREVLALIGQGLPNR 188

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L IS  TV  +I ++  K   + R+ A+  A+ + +
Sbjct: 189 GIAEQLFISEATVKTHINNLFAKAGIRDRADAVRRAIASGL 229


>gi|46203993|ref|ZP_00050651.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 214

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 60/217 (27%), Gaps = 11/217 (5%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWPFDL 86
           T  D       L   +     +  + E V   H   ++         +D  +        
Sbjct: 3   TVDDQPEVRSALRLMLGGEPDIAVVGEPVDGDHARDVIEACRPDVVLMDLRMPRCDGLVA 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                                +    F T    +         +         +   +  
Sbjct: 63  TARETALR--------PETAIIVLTTFDTDHHVVRALRAGACGFLLKDAPPDELAHAVRA 114

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 ++    L  +  LA    N         G    L+ RE E    ++ G ++ EI
Sbjct: 115 AAQGRPVLAPAVLRRVMTLA--AENTRPPDAAAVGALATLSPREREIARALARGMSNAEI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              L IS  TV  +++ ++ K   ++R+   A  +RN
Sbjct: 173 CAALFISLATVKTHVSRVIAKLGVESRTQVAALVLRN 209


>gi|269958095|ref|YP_003327884.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306776|gb|ACZ32326.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 223

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 17/230 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   D + R   +  ++       +  +        L          LD  +
Sbjct: 3   RVLVVDDHPVLRDGV-RAALVAASLDIVGEAASAADA-----VRLAVELRPDVVLLDLQL 56

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +A    D           L   +                 Y     +  
Sbjct: 57  PDFSGIEAARRIARDAPD--------AAVLAFTMSDDDETVFAALRAGAIGYVVKGVESR 108

Query: 139 RIRIGLMLLFPKGRI---ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +   +  +     +       R       A   A           +   LT RE E L 
Sbjct: 109 ELVHAIETVAHGDALFLGPGLARRVLAHFTATRAAASAPRVTNPVLEAARLTDRETEVLE 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ G  + EI+  L ++  TV N +++I+ K    +R  A+ +A    +
Sbjct: 169 LMAAGWGNAEISQRLYLAPKTVRNNVSTILGKLQASSRGEAVVWARAQGL 218


>gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 248

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 32/253 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWT---------------MRMYALTEYV 56
           ++  ++ R   V+ + +RSDL  R+I +                       R+    E  
Sbjct: 9   MSSAEQLRMVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGSGIPAKQRLVCELENW 68

Query: 57  GASHFLL--VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G+S+        D + +  LD I  S  P         +               F P   
Sbjct: 69  GSSNAGFGKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPAD---------FSPFMT 119

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            L + I P +G+          +  +  G +L          D + E+     +      
Sbjct: 120 RLQDGILPFSGLA-----FPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLL 174

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           S D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R
Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 235 IQAIAKAIRLGYI 247


>gi|56696391|ref|YP_166748.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56678128|gb|AAV94794.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 234

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D L+  +     +     +  L + +      L          LD  +   
Sbjct: 18  IVDDHPLFCDALSMTLQAVSGIRTVQTLARLEDALDW----LGNHPAPDLVILDLNLPDV 73

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +  +          R   +                     +          R
Sbjct: 74  EGLDGLVRIRTA---------ARAPVIVVSSMADNRVISGVIQAGAAGFVPKHSQREVFR 124

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G +   +   ++      +       +    +   LT ++   L  + EGK
Sbjct: 125 TAIETV-STGAVFTPEGFVDVA----REGGDGPEVEDALARLSALTNQQARILQLVCEGK 179

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A +
Sbjct: 180 LNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKK 220


>gi|78060780|ref|YP_367355.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77965330|gb|ABB06711.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 209

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L  + D    ++           + A  +             
Sbjct: 1   MKILIVDDHAILRDGVEMLLRQGDGDMVVVQASSADDAVRLLDAHAD------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +   A                +            +  A   
Sbjct: 48  -LDAIVLDLKLQGMDGLDALAVFATMR--------PGLPVIVLSSSEDPGAVRSAFAQGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   + +     R +    L +  L                 +   LT
Sbjct: 99  MGYVPKSASPRTLLSAIRIALNGERYVPPLVLDDPAL--------QHPDGAAAARGSMLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R++E L +++EG  +  IA  LG+S  T+  +I +I +      R+ A A   +  ++
Sbjct: 151 QRQIEVLRYLAEGVPNKVIADKLGLSEKTIKAHITAIFKALNVINRTQAAAAGRKAGLI 209


>gi|304406148|ref|ZP_07387805.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344732|gb|EFM10569.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 221

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 73/229 (31%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P+  +    MI  D        +     + G      +  + +     D  
Sbjct: 2   IRVLLVDDHPSVGEGTRHMIEQDPD------IKVTIVFSGVEALEKLEHETYDLMLFDLN 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L + +          ++   T       + +  +        + + S     
Sbjct: 56  MPVISGLELTKRVT---MANADAIVLIYTGYDLASHYNMLMDS-----GVSGFISKAATR 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +        ++    L ++          F+  D    ++  +  +E   L  +
Sbjct: 108 EQLITAIRCALRGEAVVPIQLLKQL----RRSEVRFQQTDGKTVEEVSINEKEQLILREV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L IS+ TV   +  I  K   ++RS AI  A R  ++
Sbjct: 164 ASGGSNKEIAAKLYISQRTVEYNLTRIFEKLGVRSRSEAIVEANRLGLI 212


>gi|293610601|ref|ZP_06692901.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|292826945|gb|EFF85310.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|325123833|gb|ADY83356.1| two component transcriptional regulator, LuxR family [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 216

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 67/230 (29%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIHETASVDEFYERLENGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPSIPIIVVSAHEETSII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    + L                 +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRQVLEGDIWLPPNLPSNLNL-----DPRAADETALAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|295675189|ref|YP_003603713.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
 gi|295435032|gb|ADG14202.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 218

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L     +   +                    G+     V   
Sbjct: 3   LRILIVEDHAVVRQGVRQLLLDRGVAREVAEAQS---------------GSEALDSVVHH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           +          +      +       
Sbjct: 48  GFDVVLLDISLPDMNGVEVLKRLKRK-----APRVAVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S T D A++   +  +    + +  +    +          + S+D       +L+
Sbjct: 100 SGYLSKTVDAAQMIGAIQQVAAGRKYVSPEMAEALA--------DYVSFDGEQLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y   ++ K   +  +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIAATLSLSVKTVSVYRTRLLDKMKLRNNAELTFYVMSNRLV 210


>gi|269219143|ref|ZP_06162997.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211290|gb|EEZ77630.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 235

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 67/225 (29%), Gaps = 31/225 (13%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++     ++ +  +   +  +     +  L                        I+ +D 
Sbjct: 39  IATFLETAEDIQIVGMGENGMEAVRLVGRL---------------------DPDILVTDI 77

Query: 83  PFDLVRCM-ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              L+  + A  +    Y   +         F      ++        Y         I 
Sbjct: 78  RMPLMDGITASEQVKALYPDTKILL---LTTFDDDEAMLSGLQAGAGAYLLKNTSPEDIV 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G ++       +        N         G + + + RE++ L  + +  
Sbjct: 135 KSIREVSSGGTVVSPGPTSRL------VKNYLVPLPPDSGVNVQFSKREMDVLRLLCQAH 188

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +  +TV  +I+SIM K    +R   +  A    +V
Sbjct: 189 SNSEIAAQLYVQESTVKTHISSIMAKLEVNSRLKVVVRAYELGLV 233


>gi|223940108|ref|ZP_03631971.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891210|gb|EEF57708.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 219

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 60/232 (25%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +D      +      +     +            +                  
Sbjct: 3   IAVSIVEDDAGLRESICRFIQGAPGFECLGAYASAEEALANV---------------PTR 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      + V+ +           L     +   V+          A   
Sbjct: 48  PPEVVLMDINLPKMNGIECVKRLKEK--------LPSLQIIMLTVYENSDRIFEALAAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +  +   G  +          +A      F+          +L 
Sbjct: 100 YGYLVKNTPPEKLLEAIEEIAKGGSPMSSH-------IARKVVQAFQPAVCAVPLIEKLA 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE + L  +S+G+   +IA  + +S  T+  YI  I  K     R+ A+  
Sbjct: 153 PREQQVLELLSKGRAYKQIAAEMNLSMGTIRTYIRRIYEKLHVNCRTDAVVK 204


>gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2]
 gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1]
 gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2]
          Length = 258

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 64/231 (27%), Gaps = 28/231 (12%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDK 97
                  +  + + +G  +          +       D  V    P   V   +      
Sbjct: 21  QSDTLALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA 80

Query: 98  YYNVLQRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK--- 150
              V Q            +   L E+      +         +   +    + +  +   
Sbjct: 81  VDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPK 138

Query: 151 ---------------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                              L      +  LA                   LT REV+CL 
Sbjct: 139 GVAGCTVFTFEVDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLR 198

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 199 WAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 249


>gi|320007624|gb|ADW02474.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 248

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 15/232 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R + V   P     L  M+     V             G     LV         +D 
Sbjct: 11  PVRLAVVDDDPLVRAGLTLMLGGAARVDIVGEA-----ADGTEVAALVDRTHPDVVLMDI 65

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +                 +    FH   + +         +      
Sbjct: 66  RMPGMDGLAATEELRRRPGAPE--------VIVLTTFHADEQVLRAIRAGAAGFVLKDTP 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECL 194
            A+I   ++ +     ++       +   AA +   +          +   L  RE +  
Sbjct: 118 PAQIVEAVLRVAAGEPVLSPAVTRRLMARAAGEGTDDGTARRTRARQRFAGLGEREQDVA 177

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  G+++ EIA  L +S  TV  +++ I+ +     R            +
Sbjct: 178 SAVGRGRSNAEIAAELHLSVATVKAHVSRILARLGLNNRVQIALLVHDAGFL 229


>gi|169634739|ref|YP_001708475.1| putative two-component response regulator [Acinetobacter baumannii
           SDF]
 gi|169153531|emb|CAP02698.1| putative two-component response regulator [Acinetobacter baumannii]
          Length = 218

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSRPQAQIHETASVDEFYERLENGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPSIPIIVVSAHEEASII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    I L                 +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRQVLDGEIWLPPNLPSNINL-----DPRAADETALAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281515|gb|ABR89925.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 74/230 (32%), Gaps = 17/230 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
             T  V  +    D       L   ++ T  +        G     L R    Q   LD 
Sbjct: 1   MTTKNVIKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDI 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      ++++     +  K    +                 I       + Y +    
Sbjct: 61  SMPDRSGIEVLK-----QVKKESPKIAVLMLSM---HREDQYAIRSLKAGASGYLNKQSA 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   +  +    + I      E+            S D        L+ RE + LT 
Sbjct: 113 PAELVNAIRQVAAGRKYISAALAQELA--------NQISDDHETPLHETLSDREYQTLTM 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ GKT  +IA  L +S  T++ Y + +++K   +  +    YA++N++V
Sbjct: 165 IASGKTVSDIANELVLSVKTISMYRSRLLQKMKLRHNAELTHYAIKNHLV 214


>gi|239981659|ref|ZP_04704183.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 229

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 66/232 (28%), Gaps = 13/232 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQ 70
           +   +EQ T+ +  L    D L R+  L   +     +  + E   G +           
Sbjct: 1   MAGHEEQTTAPIRVLVVDDDQLVRLA-LRLVIDGEPDLTVVAEATDGDTALTEAELHRPD 59

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D  R +                 L    F      +         +
Sbjct: 60  VVLMDVRMPGRDGLDATRELLTRPSPP--------AVLMLTTFDADDLVLGALRAGALGF 111

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELT 187
                  ARI   +  +     ++       +   A    +      + +    +   LT
Sbjct: 112 VLKDTPPARIAEAVRTVAAGEPVLSPSVTARVIAAATGPHSSDARTAAREAARRRLATLT 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE +    I+ G ++ EIA  L IS  TV  +  ++  K +   R      
Sbjct: 172 DRERDTAHAIAGGLSNPEIAARLHISVATVKAHTTALFTKLSAANRVQLALL 223


>gi|29828530|ref|NP_823164.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605634|dbj|BAC69699.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 64/242 (26%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + +S +   +  +  +            +               
Sbjct: 1   MTAIRLLLVDDDPLVRAGLSLMMGGAADIEIVGEAADGSEVEQLVDRT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +         +                 +    FH   + +    
Sbjct: 49  ---RPDVVLMDIRMPTLDGLAATELLRGRADAPQ--------VVVLTTFHADEQVLRALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A++   +  +     ++      ++ +L A   +          +  
Sbjct: 98  AGAAGFVLKDTPPAQLLDAVRRVAGGDPVLSPAVTRQL-MLHAAGGSPDTRRATARDRIA 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E    +  G ++  IA  L +S  TV  +++ I+ K     R           
Sbjct: 157 ALNDREREVAVAVGRGGSNAAIAAELYMSVATVKTHVSRILAKLDLNNRVQIALLTYDAG 216

Query: 245 IV 246
           ++
Sbjct: 217 LL 218


>gi|288917724|ref|ZP_06412087.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288350939|gb|EFC85153.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 250

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 76/240 (31%), Gaps = 19/240 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   + L+R    +   S      ++ + +     L++     +   LD  +
Sbjct: 13  RVVVVDDHPLWREALSR-DLTEAGFSVVGTAGSVAQAL-----LVLAATRPEVVVLDLGL 66

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +++R +  + +          + L         + +       + Y   +    
Sbjct: 67  PDGPGVEVIRALVGTAEAPNALTGAPVSVLVVSASGEQADVLDAVKAGASGYLLKSARPE 126

Query: 139 RIRIGLMLLFPKGRIILRDRLWEI-------------GLLAAYQANMFKSYDVHWGKDFE 185
            +   +        +        +                +        +  +    +  
Sbjct: 127 ELIDAVRRTARGAAVFTAGLAALVLGEASRASRASRASRASRASREPGSAAGLGAAAEPR 186

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT REVE L  +++G ++ + A  LG+S  TV N++ +++ K   + R     +A+R   
Sbjct: 187 LTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLAKLQLRNRVELTRFALREGY 246


>gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 224

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  I+   ++ EIA  L IS  TV  ++++I+RK   + RS AI Y+ +N 
Sbjct: 159 TLTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRSQAIVYSYKNG 218

Query: 245 IV 246
           ++
Sbjct: 219 LI 220


>gi|182435952|ref|YP_001823671.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464468|dbj|BAG18988.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 220

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 64/222 (28%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +S    +  + E   G +   L R        +D  +     
Sbjct: 4   RVLVAEDQSAVRAGLVLILSSAPDIEVVAEAGDGEAAVRLARELRPDLVLMDVQMPRLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +   E             L    F              + +     D   +   
Sbjct: 64  VAATRQVVGEELAD---------VLVLTTFDLDEYVFGALRAGASGFLLKNTDARDLLEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I       +    A  +               LT RE E L  + EG ++
Sbjct: 115 VRTVARGEGLIAPAVTRRLIAEFAGASPRHGRRTADPAVLDALTRREREVLGCLGEGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA+ L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 175 AEIALRLAMAEATVKTHVSRVLGKLELRSRVQAAVLAQELGI 216


>gi|91224660|ref|ZP_01259921.1| response regulator (repressor) in two-component regulatory system
           with UhpB (LuxR/UhpA family) protein [Vibrio
           alginolyticus 12G01]
 gi|262395391|ref|YP_003287244.1| transcriptional regulatory protein UhpA [Vibrio sp. Ex25]
 gi|91190548|gb|EAS76816.1| response regulator (repressor) in two-component regulatory system
           with UhpB (LuxR/UhpA family) protein [Vibrio
           alginolyticus 12G01]
 gi|262338985|gb|ACY52779.1| transcriptional regulatory protein UhpA [Vibrio sp. Ex25]
          Length = 202

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 29/221 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            + V          A+++ L+  ++      ++ E   G                LD  +
Sbjct: 4   VALVDDHVIVRSGFAQLLNLESDITVVGEFGSVAEARKGLPAV------HPHVVILDISM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   + +  +                     V  +              Y S      
Sbjct: 58  PDESGLNFLSEI---------PTGIACV--MLSVHDSPAMVEKSLKLGAKGYLSKRCSPD 106

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +      G  +  D            A    +   +     +LT RE E    ++
Sbjct: 107 ELIQAVRTSASGGCYLTSD-----------IALKLATPSDNTTSLCQLTKRENEVCQLLA 155

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G     +A  LG+S  TV+ + A+ + K   K        
Sbjct: 156 TGLDVKSVAAELGLSHKTVHVHRANAIDKLGVKNNVELAKL 196


>gi|311109180|ref|YP_003982033.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310763869|gb|ADP19318.1| bacterial regulatory protein, LuxR family protein 12 [Achromobacter
           xylosoxidans A8]
          Length = 209

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 18/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +S +    D  A  + L   ++       + E   G     L R +      LD  +   
Sbjct: 1   MSTVLIVDDHPAFRLVLRTQIALLPSANRIIEADNGVDTLALARSERPDLIVLDLDMPKM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +           L+                          Y S   ++  + 
Sbjct: 61  GGLEAISRILAVN-----PDLRILVVS---AHDPSVFASRVAELGACGYASKRLEIKELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     +                A+     D H  K   L+ +E+     +++G 
Sbjct: 113 RCIESVLAGYSVFPNSA---------KAASNADVVDFHQKKLDLLSNKEMVVTQMLAQGL 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EI   L IS  TV+ +   IM K    +    + +A ++ I
Sbjct: 164 SNKEIGDALFISNKTVSTHKTRIMNKLQIGSLVELVDFARKSKI 207


>gi|311280044|ref|YP_003942275.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308749239|gb|ADO48991.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 216

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 83/232 (35%), Gaps = 24/232 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT     +     L+ R   L  T+            V   H  +V  ++  +   D +
Sbjct: 1   MRTDKTPSVLRSLLLITR-PSLQSTLLLQALKKRFYNDVTLEHCDVVDSEIVDDG--DLL 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELF------CPVFHTLPENITPPAGMDNRYC 131
           +         + +      ++   LQ   + F       P  +   + +  P  M +   
Sbjct: 58  LFDM------QSIDSQAMHQWCFALQNCPKQFKVLLFNTPQHYHNRDIVEWP--MISGVF 109

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D   +  G+  +    +           ++  Y           W +  ELT RE 
Sbjct: 110 HTETDEEHLIDGIKNVCRGEKCFP-------KVINDYIVQQLNLSHPQWNECVELTRREK 162

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E L  + +G ++ EIA +L IS NTV  +I ++ +K + K R+ A+ +A RN
Sbjct: 163 EILCKLRQGASNIEIAHLLFISENTVKTHIYNLFKKLSVKNRTQAVFWANRN 214


>gi|302877496|ref|YP_003846060.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302580285|gb|ADL54296.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 65/239 (27%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       + ++  +      ++ ++                     ++ +  
Sbjct: 1   MKILMADDHALFRDGMRYVLQQLSDTLELLEVNNFPECLK--------------VVAQHP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        V              +             +           
Sbjct: 47  ELDLVLLDLNMPGSEGARSVSYFHQRF-----PRIPVVVVSGDDALANM---EKVMDYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +     +   L  +      +  +   +  + A                 + LT
Sbjct: 99  SGFICKSSTSHAMLAALKRVLSGEIYVPPEIFRQRSVQAV-------DKRSMHTNGYGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R++E L  I  G ++ EIA    ++  TV  ++A++ +      R  A+  A R  +V
Sbjct: 152 PRQMEVLEHICAGMSNKEIASHTHLAEGTVKIHVAAVYQTLKVNGRLEAVRVAERLGLV 210


>gi|256829789|ref|YP_003158517.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578965|gb|ACU90101.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 219

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 60/212 (28%), Gaps = 14/212 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    DLL R   L   +          +   G     L          LD ++      
Sbjct: 6   LLVEDDLLLR-KGLKTMIEMRGGFSIDADTGSGKEAVRLFGMLHPDIVLLDLMLPDISGT 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++R +          V      +   +           A   N Y         + +G+
Sbjct: 65  EVLRQLKQ--------VAPNVPVILLTICEDNELLFQALALGANAYVLKGSGPEELFLGI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    I       I        +   S          LT RE E +  I +G  S 
Sbjct: 117 HYSMKNEMFISPKLAKIIVEDYLLVNHHRNSLPPLHN----LTSREKEIVKLIIDGNKSR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           EIA IL IS  TVN + ++I+ K      S  
Sbjct: 173 EIAEILFISIKTVNKHRSNILVKLGIHNLSEL 204


>gi|325961975|ref|YP_004239881.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468062|gb|ADX71747.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 208

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 23/209 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV-SSDWP 83
           +    D L     L   +     +    E   G     LV+        +D  +      
Sbjct: 6   VLLVDDHLVVRSGLRALLGTQPDLQVTAEAASGEEALRLVQEHGPAVVVMDLAMGPGMDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +      +   V           + +  + +         Y         I   
Sbjct: 66  IEAIRKIRERNPRQAILVF--------TTYDSDADIVRAVDAGAMGYLLKDAAPEEIFAA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++          +A+      +        +  LT RE E L+ +++G ++
Sbjct: 118 IRGAVQGKSVMSP-------PVASRLFQQLR------NPEEVLTPREAELLSLLTQGLSN 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKT 232
            E+   L IS  TV  ++A I  K    T
Sbjct: 165 RELGQRLFISEATVKTHLAHIYAKLGVDT 193


>gi|295401748|ref|ZP_06811714.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976235|gb|EFG51847.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 223

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D           +             G     ++    +    LD  +      
Sbjct: 3   HILVVDDHRLVGEGTKNMLESEQDFQVELVTSGTEAEQMMEQRTYDVFLLDWRMPDMSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R +   + +    ++        P F+ L E+          + S T    ++   +
Sbjct: 63  ELSRRILQKQPNAK--IVIYTGYDVAPFFNYLIES------GITGFVSKTATSEQLITVI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I    L ++ L         K+      +   L+  E E L  ++ G  + 
Sbjct: 115 RCALRDEAVIPVHLLRQLHL------REVKAKMAENAEHVALSQLEQEILMEVANGLCNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA    IS+ +V  +++ I  K    +R  A+  A +  ++
Sbjct: 169 DIAKKHHISQRSVERHLSRIFTKLHVSSRVEAVEKAKQLGLI 210


>gi|182412471|ref|YP_001817537.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839685|gb|ACB73937.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 225

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 68/243 (27%), Gaps = 26/243 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+     + +++  +       +  +       AR++      S    +           
Sbjct: 1   MSASAPTIRVLVVDDSALVRMGLRSVLGTHGAAARIVVAGEADSVASAVSETKRL----- 55

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +         R +   +             L      T     
Sbjct: 56  -------KPDVVLLDIRLPDGSGLHACREIKRMD--------ASTRVLILTSVATDELIQ 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y     D   +   ++  F    ++  +    +  L        +      
Sbjct: 101 EAVMAGAQGYLMKEIDPDGLTRAIVDAFAGKSVLTPEITARVLQLLR------EGPPAAG 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ +E   L  +++G T+ E+A  L +S NTV NY+ S+  K   K RS A A  
Sbjct: 155 DSLAVLSAQERRVLALVADGLTNKEVAEKLRLSDNTVKNYLVSVFEKLQVKRRSQAAAVY 214

Query: 241 VRN 243
           V+ 
Sbjct: 215 VQA 217


>gi|90423713|ref|YP_532083.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105727|gb|ABD87764.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisB18]
          Length = 240

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L+ +   +        +       G +H +     +   ++ + ++   +    V+    
Sbjct: 7   LSTIDRANSVDDLARTLVDWRNESGVAHLVYHATHVPGCEQPNPVLLLTYDDAWVKRYVE 66

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLTFDVARIR 141
            +      V+    +   P+     E                    + +       A  R
Sbjct: 67  QDYFGIDPVVVAGRDAVLPIDWMSVEHATPQARQFFAEAESYGVGRHGFTLPIRGPAAER 126

Query: 142 IGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLT 195
               +                L +  LLA Y  +                L+ RE +CL 
Sbjct: 127 ALFTITTNATDDHWHRWRFSYLKDFHLLAHYLHDRAMRLAGLRLDHAMRPLSRREQQCLQ 186

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G+T  +IA  L +S + V+ Y+ +  RK    T   AIA AVR  ++
Sbjct: 187 GLVHGRTPGQIAGDLELSASAVHGYLRTARRKLNCATHEQAIAKAVRLELL 237


>gi|297560098|ref|YP_003679072.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844546|gb|ADH66566.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 229

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 58/238 (24%), Gaps = 28/238 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +D    S +  + +    +  +                    GA     V  
Sbjct: 7   PVRVLLVDDDPLVRSGLRIMLSGGGDIEVVGEAGD---------------GAEVPAAVAE 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +                 L    F      +      
Sbjct: 52  HRPDVVLMDVRMPGTDGIAATEALRGDGSGPQ--------VLVLTTFDADATVVRALRAG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA-----YQANMFKSYDVHWG 181
              Y        RI   +        ++       +    A      +       +    
Sbjct: 104 AAGYLLKHTAPERIVEAVRRAAAGEPVLSPSVARALMDRVAGTDPVERTEAPSRRERARD 163

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +   LT RE E    ++ G ++ EIA  L +S  TV  +++S + K     R      
Sbjct: 164 RLALLTEREREVAEAVTAGLSNAEIAERLYMSMGTVKAHVSSALTKLDLSGRVQLALL 221


>gi|91786613|ref|YP_547565.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91695838|gb|ABE42667.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 224

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 19/229 (8%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+++ R   V   P   + +AR + L   +       ++ E +      +V         
Sbjct: 10  RQEKTRIMMVDDHPLVREGMARFLNLQGDLDLCCEAGSVEEAL-----AVVADCNPALAI 64

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  ++ +   +L++ +        Y  L                         N Y   
Sbjct: 65  IDISLNGESGLELIKTLRR-----RYPGLALLAISM---HDESVFAERALRAGANGYLMK 116

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 I + +  +      +       +         +             L+ RE E 
Sbjct: 117 KEATGNILLAVRRVLAGDIYLSAAMHSRLSQ------RLLAPQAGAPSPIAGLSEREFEI 170

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L  +  G  + ++A  L  S  T+  + AS+  K   K+ +  + +A++
Sbjct: 171 LHLLGLGFGTRQVADKLNRSIKTIETHRASLKEKLQLKSGADLVRFAIQ 219


>gi|119870231|ref|YP_940183.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126436928|ref|YP_001072619.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|119696320|gb|ABL93393.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126236728|gb|ABO00129.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 67/232 (28%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L +    L  +   D   S   R+  L               
Sbjct: 2   VRVFLVDDHEVVRRGLIDLLSADPELDVVGEADSVASALARIPTL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRDLLSRLPDLRC--------LMLTSFTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +        +  +           L+
Sbjct: 99  SGFVVKDIKGMELAQAIKDVGAGRSLLDNRAAAAL-------MSKLRGDVERSDPLSGLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +
Sbjct: 152 AQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVF 203


>gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 234

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 10/222 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
             +        +   + +  ++    +F L R         +  +      +    + ++
Sbjct: 13  PELSRAINRTDFFRLLKSAAQHYNFDNFALARISEASAPFGERDIVITNVAERRVGLFIT 72

Query: 94  EKDKYYNVLQR--PTELFCPVFHTLPENITPPAGMD-----NRYCS--LTFDVARIRIGL 144
              +    ++      L  PV     +    P+ +      +        F     R  L
Sbjct: 73  TLKEALGTVRAKTAQFLATPVHGRSAQPEDYPSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +L   + +   +  + ++ L A    +      +       LT RE E + W SEGKTS 
Sbjct: 133 VLCG-ERQEPDQSEIADMLLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSA 191

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 192 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|302131479|ref|ZP_07257469.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADIPGYAIVGEAADGAQLSGLAQRL---------------E 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S   FD ++ +          V      L   +       I        
Sbjct: 49  PDIILLDIWMKSIDGFDALKQLFK--------VQPHCKVLILSMHTDPDMIIRALDAGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +  L                + + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNDQRYLSPAIAHTV--LERAVHGTRAERARAARERYNLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILG--ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG  +S  TV  + + IM++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIASGLGLSLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRERII 218


>gi|291618350|ref|YP_003521092.1| NarP [Pantoea ananatis LMG 20103]
 gi|291153380|gb|ADD77964.1| NarP [Pantoea ananatis LMG 20103]
 gi|327394743|dbj|BAK12165.1| nitrate/nitrite response regulator protein NarP [Pantoea ananatis
           AJ13355]
          Length = 210

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 60/241 (24%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + I++  +       +  L      L  +               LT         
Sbjct: 1   MAQPALTIMIVDDHPLMRRGIRQLLALEPQLQVIAEASNGTEALAEARRLT--------- 51

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      D ++ +                 L   V     +    
Sbjct: 52  ------PDIILLDLNMKGMSGLDTLKALRHEGIS--------SRILVLTVSDARSDIYAL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   +M       +        + +                  
Sbjct: 98  VDAGADGYLLKDSEPEILLRQIMQALQGETVFSDAVRHALSM-----------RHNSDDP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE   +  ++ G ++ ++A  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 FRLLTERERGVMQEVARGLSNKDVAHALHISEETVKVHIRNVLRKLDVRSRVAATIMWIE 206

Query: 243 N 243
            
Sbjct: 207 R 207


>gi|255035483|ref|YP_003086104.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948239|gb|ACT92939.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 207

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 19/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   +     +     +  A   L      + +   +D  +     
Sbjct: 2   DVFIIDDHPIVLQGLKNLLESREGIRVTGIFDQADSALAALDSHIPEVMLMDINLPDISG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L + +  +        ++        + +     ++      + Y         I   
Sbjct: 62  VTLCQQVKQAH-----PEIRVV---ALSIHNERSVIMSMLQSGASGYVLKNAIGDDIVAA 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L         +  +    +           ++      +   LT RE E L  I +G T+
Sbjct: 114 LQAAMEGQIYLCAETQKALN----------EAPGTEPKEIPRLTRREKEILELIGQGYTT 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS +TV ++  ++  K      +  +  A    ++
Sbjct: 164 QQIAAELFISTHTVESHRKNLKEKFGVPNTATVVRMAAELGLM 206


>gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 199

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L           A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLML--QPDVESVFQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y     ++
Sbjct: 56  MPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERNI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +   G+    + +  + +                     LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGGKEYSPELMEVVMM-----------------HPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
          Length = 199

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + ++  L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQL--LAFQADVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y     ++
Sbjct: 56  MPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERNI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +   G+    + +  + +                     LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGGKEYSPELMEVVMM-----------------HPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|145594124|ref|YP_001158421.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303461|gb|ABP54043.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 212

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     ++ L T S  +  +           R+ AL               
Sbjct: 2   IRVYLLDDHEVVRRGLADLLTASGDIEVVGESGLAQEAARRIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +      D+ R +   +             L    +              
Sbjct: 47  RPDVAILDARLPDGNGIDVCRDIRALDSSI--------KGLILTSYEDDEALFAAIMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++          +        +S      +   LT
Sbjct: 99  AGYVLKQIRGTDLVDAVRRVSAGQSLLDPA-------ITTRVLERIRSGVEQPRELKSLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L +++EG T+ EIA  + ++  TV NY++S++ K   + R+ A   A R 
Sbjct: 152 DQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATRL 207


>gi|307728207|ref|YP_003905431.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307582742|gb|ADN56140.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 218

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       V  L     +   +                              D
Sbjct: 3   LRILLADDHAVVRQGVRQLLLDRGVAREVTEAQTGAE--------------------ALD 42

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q  D ++      D+     L    +    +          +      +       
Sbjct: 43  AVATQGYDVVLLDISLPDMNGVEVLKRLKRKAPRVAVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T D A++   +  +    + +       +          + S+D       +L+
Sbjct: 100 AGYLSKTVDAAQMIGAIQQVAAGRKYVSPAMAEALA--------DYVSFDGEQMPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y   ++ K   +  +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIAEALSLSVKTVSVYRTRLLEKMKLRNNAELTFYVMSNRLV 210


>gi|291303233|ref|YP_003514511.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572453|gb|ADD45418.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 21/230 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +   R   V         L +++ ++  V+ +          G     L+         
Sbjct: 2   DDTPVRVLIVDDQTLMRQGLRKLLEIEPGVTVSGAA-----ASGQEALALLATTTVDVAL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D+ +       L+R +A         +L          F          A     +   
Sbjct: 57  VDAKMPGMDGVALIRRLAAEHPSVACVIL--------TTFDDDEYIFGGLAAGARGFLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   L        ++           A       ++     G +  L+ RE E 
Sbjct: 109 DTPPDELVTTLRRAAAGETVLGSPA-------AERVVARLRTDPHGTGLEA-LSAREREV 160

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              I++G  + EIA  L I+  TV N++ +++RK   + R+    +  ++
Sbjct: 161 GDLIAQGAHNREIARRLFITEGTVKNHVTALLRKLGMRDRTQLALFLAKH 210


>gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 225

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 82/244 (33%), Gaps = 28/244 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  E     + V+   + ++    ++P D       ++ +              
Sbjct: 5   SKIRVMVIDEQPFFRAGVAQALSDNNF--EILPTDTHRDPMEQIES-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L     L S + +    DL R +  +         +       P    L E I   A 
Sbjct: 49  -SLPDVVLLGSDLVAYSGLDLGRRIVRTF-----PNTKVIILSPNPNDTELFECIRTAAV 102

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL---WEIGLLAAYQANMFKSYDVHWGK 182
                   +     +   +         I    +        + A   ++          
Sbjct: 103 AC---LKKSSTADELIETIRRANRGEYPINESLMTSPNLAKQVLAQFQDVSLLGKDASNF 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT R+ + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+ A+  A+R
Sbjct: 160 VTPLTNRKKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRAHAVVVAIR 219

Query: 243 NNIV 246
             ++
Sbjct: 220 CGLI 223


>gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
          Length = 189

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L+  +      LD  +      +++  +   + +    V+          F   
Sbjct: 25  GQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRP 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y     ++A +   L  +   G+    + +  + +            
Sbjct: 77  GYFERAVKAGVDAYVLKERNIADLMQTLHTVLEGGKEYSPELMEVVMM------------ 124

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT +E+  L  I++G ++ EIA  L +S  TV NY+ +I+ K     R+ A
Sbjct: 125 -----HPNPLTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEA 179

Query: 237 IAYAVRNNIV 246
              A  +  +
Sbjct: 180 ANIAKESGWL 189


>gi|329945810|ref|ZP_08293497.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528258|gb|EGF55236.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 238

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 17/233 (7%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +S +  R+D L  +           R+    +          R 
Sbjct: 17  PITVMIVDDQRATRMGLSLIINRADDLKVVAEAAHGQDALDRLAERIQE---------RR 67

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L     +D  +      D    +                 L    +          +  
Sbjct: 68  PLPDVILMDVRMPVLNGIDATARITQLYPSI--------RTLVLTTYDQDEFAFGALSAG 119

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +       A++   L  +     I+      E+                   +   L
Sbjct: 120 ASGFLLKDTRTAQLHQALRAVSSGDAILTPRITRELLNRHILSPIASPQQRTARRRLGRL 179

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + RE E    ++EG T+ EIA  L ++ ++V   +  I+ K   + R   +  
Sbjct: 180 SPREREVAELVAEGLTNAEIAQQLVLAPDSVKKNVTRILTKLDLRDRVQLVIL 232


>gi|284033562|ref|YP_003383493.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283812855|gb|ADB34694.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 221

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D    + +  +   +  L  +   D   +    +                 +
Sbjct: 3   IRVLIVDDDPLLRAGLKLMLGGAPDLRVVAEADDGAAVQALIDR---------------E 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +           +   T      F      +       
Sbjct: 48  SPDVVLMDIRMPGMDGLTATEAVRAR---PGAPEVVILTT-----FDADEHVLRALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A I   +  +     ++       +    A      +       +   L 
Sbjct: 100 AGFVLKDTPPAEIVESVRRVANGQPVLSPTVTQRLITRVAASGQDDRRNRATA-RLAALN 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    + EGK++ EI+  L +S  TV  +++ I+ K     R           ++
Sbjct: 159 AREREIAVAVGEGKSNAEISATLYLSVPTVKTHVSRILTKLDFNNRVQIALLVHDAGLL 217


>gi|256831896|ref|YP_003160623.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256685427|gb|ACV08320.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 218

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 27/241 (11%)

Query: 7   QVNIVLNREDEQRTSFVSH-LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            + I +  +     + V   LP R D++A    +D                      ++ 
Sbjct: 4   PIRIAIIDDHAMFRAGVRASLPPRFDVVAEAGDVDN------------------AITVLH 45

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +           +                 L   V     + +     
Sbjct: 46  DTTPDVVLLDVHLPGGAGGGGAEILTRCHALNGD-----TKFLALSVSDAAEDVVAVIRA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y +       +   ++ +     +        +      Q     + D    +   
Sbjct: 101 GARGYVTKNIAPDELADAMVRVRDGDAVFSPRLAGFVLDAFGTQHADIATTDDELDR--- 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  I+ G    E+A  L IS  TV +++++++RK    +R     +A    +
Sbjct: 158 LSAREQEVMRLIARGYAYREVASELFISVKTVESHVSAVLRKLQLSSRHELTRWAAARRL 217

Query: 246 V 246
           +
Sbjct: 218 L 218


>gi|34498054|ref|NP_902269.1| LuxR family two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
 gi|34103909|gb|AAQ60269.1| probable two-component response regulator, LuxR family
           [Chromobacterium violaceum ATCC 12472]
          Length = 217

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 34/237 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +    ++ + +L +       +  ++  +        L               +
Sbjct: 14  RVLLVEDHSLLSNGIKNLLSALPSYHVVGEVNDGLGVYSACQRL---------------M 58

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D++R +                 +                    
Sbjct: 59  PDLVLLDLGLPGMDGIDVIRQLKQRW--------PELNIIVITADSAEHRARAALDAGAL 110

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L +       +      E             +   +      LT 
Sbjct: 111 AYVLKKSPQQTLLAALQIASQGHIFLDPSLDLEQI-----------TETRNVEGPTRLTM 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  I+EG  + +IA  L I+  TV  +  ++MRK           +A+R  I
Sbjct: 160 RENQVLKLIAEGMRNRDIAESLKITIKTVETHRLNLMRKLDAHNAVELTNWAIRLGI 216


>gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
 gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp.
           TrichSKD4]
          Length = 240

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 75/243 (30%), Gaps = 25/243 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H     DL+  +       S   +        G +  +    +   E      + S+ P 
Sbjct: 2   HSNEAQDLVHTISNETDLKSVWAKACGYFSGHGFNSLIYADINSIGESL----ILSNAPT 57

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN---------------ITPPAGMDNR 129
             +     S         +     +  +                          AG+   
Sbjct: 58  QWIEHYEASGYASCDPFFKYCCNTYGSLRTGSAYLSRYKYLQPKERQLILDASEAGLTAG 117

Query: 130 YCSLTFDVA----RIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYD-VHWGKD 183
           + S+              L     +    +L+DR  E   LA +     K          
Sbjct: 118 FSSVFRTNGTNGCGGWNILSDAGSEHVDQVLQDREAEFHFLANFLHLRMKDVALHAHSSA 177

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+ECL W+S G  + E+A  L IS  TV  +I +   K + KTR  A+A AV  
Sbjct: 178 PVLTRRELECLKWLSAGLRTAELADKLAISGPTVEFHIKNAREKLSAKTREQAVARAVSL 237

Query: 244 NIV 246
            ++
Sbjct: 238 KLL 240


>gi|207723660|ref|YP_002254058.1| two-component response regulator [Ralstonia solanacearum MolK2]
 gi|206588864|emb|CAQ35826.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 217

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 12/190 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L    +      D  +      D+V  +           L +   +   V+   
Sbjct: 17  GREACQLAISLIPDLVLTDLSMPGMNGIDMVATIKRR--------LPQIRVVVLTVYKAE 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y         +   L ++    R +  D    +           +  
Sbjct: 69  EYVREALRVGVDGYVLKDASFEELVTALHVVMLGKRHLSADVYGNV----VQSFVNGRDA 124

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE   L  ++EG+T+ ++ + L +S  T+  Y A +M K      +G 
Sbjct: 125 PAPKSAWETLSARERSVLQLVAEGRTNRQVGLYLNLSPKTIEKYRAHLMEKLGVCNVTGL 184

Query: 237 IAYAVRNNIV 246
           +  A+   ++
Sbjct: 185 VLAAIDLGLI 194


>gi|188026100|ref|ZP_02960869.2| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827]
 gi|188021614|gb|EDU59654.1| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827]
          Length = 225

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 24/219 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           Q    +   P     L  +I  D   +        +E +      +           D  
Sbjct: 23  QTVMIIDEHPIYRYGLRHLIDSDAYFTVAAECCNCSEALD-----IADKLQPDIILTDIN 77

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F+ +R +       Y  VL               +           Y     ++
Sbjct: 78  IYGTKTFETIRLLRKRCLKSYLLVL--------SFSALKTDIYNAIDAGAQGYLLKNSEL 129

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +                     +          LT RE E L  +
Sbjct: 130 DMLMNSMRKAAAGHHVFSE-----------KVYQYLVNRHKINDPLSSLTRRECEILHEM 178

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + G  + EI+ +L IS  TV  +I ++++K   ++R  A
Sbjct: 179 AAGLKNREISQLLFISEETVKVHIRNLLKKLNVRSRLEA 217


>gi|299134073|ref|ZP_07027266.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298590820|gb|EFI51022.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 225

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 30/235 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +V+  +       +          A +         T  +   ++             
Sbjct: 8   TRLVIADDHPLFRGALREAVRGVVPAANIDEAGAFGELTALLEKESD------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      V+   ++    +  ++           
Sbjct: 55  -IDLVLLDLSMPGVSGFSGL-IYLRAQYPAIPVVVVSASDDGDTIRRSMEF-------GA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +    + +  +R  +  +         D            A +         +   LT
Sbjct: 106 SGFIPKRYGIETLREAIGKVMNGDVWTPSDV--------DLTAGVDPDMAKLRDRLITLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 158 PQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIVAAK 212


>gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
          Length = 199

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++           + A     G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTFQT--DVESVLQA---KDGQEAIQLLEKEPVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +   + +    V+          F              + Y      +A + 
Sbjct: 60  TGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|94314859|ref|YP_588068.1| LuxR family response regulator [Cupriavidus metallidurans CH34]
 gi|93358711|gb|ABF12799.1| DNA-binding response regulator, LuxR family (two-component response
           regulator activity) [Cupriavidus metallidurans CH34]
          Length = 220

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLD 75
             R   ++ +    D  A  + L   +S  + +  L E   G     LVR        LD
Sbjct: 5   PPRQQGMASILIVDDHPALRLALRTQLSQLLGVTTLLEADNGQGALNLVRQHRPDLVLLD 64

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      D V  +           ++            +P            + S T 
Sbjct: 65  LDIPRMSGLDAVPRIRALH-----PAVRILVLSAQ---DPIPFAARAYHAGAQGFVSKTQ 116

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           ++  I   +  +     +   +   +                       +LT +EVE L 
Sbjct: 117 NMDAILRCVESVLGGFTVFPNNNPRD--------NPRESRVVGDSEGLSKLTDKEVEILR 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G ++  I   L IS  TV++Y   +M+K A  +    I +A R  ++
Sbjct: 169 MLTRGMSNKAIGKALFISNKTVSSYKTRVMKKLAADSLVDLIDFARRCRLI 219


>gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8]
 gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8]
          Length = 236

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 17/234 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-------ASHFLLVRWDLFQEQKLDSIV 78
           L + S L A ++ ++       R+  L   +G        +  L    +    Q     +
Sbjct: 6   LASESTLPAPVLLVEDEPLICRRLEGLLLQLGYAPEALVFAATLAQARERLASQPFALAL 65

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDV 137
                 D      ++E       L            +  + I          Y     D 
Sbjct: 66  VDLGLPDGNGTDLIAEMHAEDPSLAILVISA----WSTEDAILAALRAGATGYVLKERDD 121

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-----WGKDFELTGREVE 192
             + + +  +   G  I       I      +                     L+ RE +
Sbjct: 122 LEVSLSIRSVLRGGAPIDPFVARRIIEELRPRRTGPSDAAAGDPAESADSGETLSPRESQ 181

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  +SEG  + EIA  L +SR TV  ++  I RK A  +R+ AI  A    ++
Sbjct: 182 ILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLAVSSRTRAIHAARTRGLL 235


>gi|255034528|ref|YP_003085149.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254947284|gb|ACT91984.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 206

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +D++    + H       ++ ++           + +  E      FL     
Sbjct: 2   IRLGIIEDDDEIRHMLDHYLGGQPGISVLLSA-------PSVESFFEQWNDPIFL----- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +  +     +  +             +   +   V+              
Sbjct: 50  --DIVLSDIGLPGESGIKGISRIKRRA--------PKCGVMMLTVYDDASRIFQALCNGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + +IR  +  L+  G  +          +A      F   +     +  LT
Sbjct: 100 TGYLLKQTPLPQIREAVTSLYEGGAPMSPG-------IARKVVEYFNPKNAGQLSE-NLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE + +  I EG T+ E+AV + IS  TV  +I +I  K    +R   I+ 
Sbjct: 152 PREAQIVLAIEEGLTNKEVAVRMDISLETVKYHIKNIYEKLQVNSRHALISR 203


>gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLV 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|320009809|gb|ADW04659.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 225

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 64/242 (26%), Gaps = 32/242 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L      +  +           R+              
Sbjct: 9   EEGKITVFLLDDHEVVRRGVHELLAAEADIEVVGEAGTAADALARI-------------- 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    + D  V      D        E       ++            L + I   
Sbjct: 55  ------PATRPDVAVLDVRLPDGSGVEVCREVRSRDEDIKCLMLTSYADDEALFDAIM-- 106

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWG 181
               + Y         +   +  +     ++                   +         
Sbjct: 107 -AGASGYVLKAIRGNELLSAVRDVAAGKSLLDPAATAR-------VLERLREGKEGKGDD 158

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 159 RLAGLTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVA 218

Query: 242 RN 243
           R 
Sbjct: 219 RL 220


>gi|95928587|ref|ZP_01311334.1| two component transcriptional regulator, LuxR family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135377|gb|EAT17029.1| two component transcriptional regulator, LuxR family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 263

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  E       + +L      +  +      V    ++                  
Sbjct: 35  LQVLIVAEFPVVEEGLDYLLRDYPDIEVVATASNGVEGLEQLRKT--------------- 79

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D         + +      +      V++  ++                    
Sbjct: 80  PIDIVVHDLCSVELGGPEAITLYLEEKPQLG--VIEYSSQS------DEVAVFESLKAGA 131

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +  +  +   +  +   G  I  +       +  +  +  ++      +   LT
Sbjct: 132 RGYVLKSSSIDELVNAIREVHQGGYFISAELNPA---IIQFYLDHRENASDQLSEYQLLT 188

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ GK + EI+ IL IS  TV  + A++ +K +  T +    YA++  ++
Sbjct: 189 DREKQVFRLLANGKQTHEISEILCISPKTVAKHRAAVKKKLSLNTTAEMAKYAIQIGVI 247


>gi|326772758|ref|ZP_08232042.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637390|gb|EGE38292.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 241

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 16/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D    +  L+   S       LT      +    V+         D  +      
Sbjct: 12  LALVDDDAMALAHLESYFSDVEDFTILTATRSPRAVLRFVQSHQVDVLITDVHMEHMDGV 71

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +                 +      T  + +       + +   +     I   +
Sbjct: 72  EMTREVLRLS--------PSTRVILLTTVDTDEDLLQGLGAGASGFLLKSAPAEEIIAAV 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +++       +        +   +          L+ RE + L  + EG ++ 
Sbjct: 124 RTVHSGAKVVAPTPTTRLI-------DYALASVRGADGSVHLSQRERDVLHLLCEGASNR 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA +L I+  TV ++I  +  KT T +R   + +A ++  
Sbjct: 177 KIASLLAIAEATVKSHITGLFHKTGTVSRLEIVVWAFKHGY 217


>gi|304406485|ref|ZP_07388141.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304344543|gb|EFM10381.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 217

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 65/201 (32%), Gaps = 8/201 (3%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   +   + +    + VG ++     ++L    +   ++       +   ++       
Sbjct: 17  VRDGIEIIVNLQPDMQVVGTANNGQEGYELVGRLRPHIVLMDIEMPIMNGIISTQRIKAD 76

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
           Y             F      +   AG  +      F   ++   L        ++    
Sbjct: 77  YPDTIILL---LTTFSDEHYVVEGLAGGASGILLKDFTANKLTGALREAMRGELLLPASI 133

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             ++ +          +     G DF LT RE+E  T +   K + EIA  L I+  TV 
Sbjct: 134 AAKLAMRL-----RSVTSPTFAGADFALTPREIEIATLLIAYKNNREIAEALFITEGTVK 188

Query: 219 NYIASIMRKTATKTRSGAIAY 239
           NYI+ I  K     R+  IA 
Sbjct: 189 NYISVIYEKVGMNDRAKVIAR 209


>gi|269967734|ref|ZP_06181782.1| response regulator (repressor) in two-component regulatory system
           with UhpB [Vibrio alginolyticus 40B]
 gi|269827640|gb|EEZ81926.1| response regulator (repressor) in two-component regulatory system
           with UhpB [Vibrio alginolyticus 40B]
          Length = 202

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 57/221 (25%), Gaps = 29/221 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
            + V          A+++ L+  ++      ++ E   G                LD  +
Sbjct: 4   VALVDDHVIVRSGFAQLLNLESDITVVGEFGSVAEARKGLPAV------HPHVVILDISM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   + +  +                     V  +              Y S      
Sbjct: 58  PDESGLNFLSEI---------PTGIACV--MLSVHDSPAMVEKSLKLGAKGYLSKRCSPD 106

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +      G  +  D            A    +   +     +LT RE E    ++
Sbjct: 107 ELIQAVRTSASGGCYLTSD-----------IALKLATPSDNTTSLCQLTKRENEVCQLLA 155

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G     +A  LG+S  TV+ + A+ + K   K        
Sbjct: 156 NGLDVKSVAAELGLSHKTVHVHRANAIDKLGVKNNVELAKL 196


>gi|228990797|ref|ZP_04150762.1| Response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228996897|ref|ZP_04156530.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|229004572|ref|ZP_04162310.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228756613|gb|EEM05920.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228762776|gb|EEM11690.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|228769323|gb|EEM17921.1| Response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 29/233 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  ++      +  + +  +    +  ++                G       + 
Sbjct: 2   KIKVLIADDNSFIREGMKIILSTYEEFEVLETVND---------------GQEALDYCKK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + +    +  + +             +   L    F      +      
Sbjct: 47  HDVDIALLDVRMPNMNGVEATKLICEET---------KTKPLILTTFDDDEYILEAVKNG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D  RIR  +  ++    ++    L +I              D         
Sbjct: 98  AKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIKCNLLENKEEESKID-----KTLF 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE+  +  I++G ++ EI+  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 153 TERELSIIALIAKGFSNKEISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|15607984|ref|NP_215359.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium tuberculosis H37Rv]
 gi|15840258|ref|NP_335295.1| LuxR family DNA-binding response regulator [Mycobacterium
           tuberculosis CDC1551]
 gi|121636767|ref|YP_976990.1| putative nitrate/nitrite response transcriptional regulatory
           protein narL [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660621|ref|YP_001282144.1| putative nitrate/nitrite response transcriptional regulatory
           protein NarL [Mycobacterium tuberculosis H37Ra]
 gi|148822052|ref|YP_001286806.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis F11]
 gi|167967564|ref|ZP_02549841.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis H37Ra]
 gi|215426107|ref|ZP_03424026.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T92]
 gi|215429700|ref|ZP_03427619.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|218752509|ref|ZP_03531305.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|219556707|ref|ZP_03535783.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T17]
 gi|224989238|ref|YP_002643925.1| putative nitrate/nitrite response transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800134|ref|YP_003033135.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 1435]
 gi|254231154|ref|ZP_04924481.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis C]
 gi|254363780|ref|ZP_04979826.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549820|ref|ZP_05140267.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260185739|ref|ZP_05763213.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|260199864|ref|ZP_05767355.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289442253|ref|ZP_06431997.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289446409|ref|ZP_06436153.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|289555375|ref|ZP_06444585.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 605]
 gi|289568806|ref|ZP_06449033.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T17]
 gi|289749363|ref|ZP_06508741.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T92]
 gi|289752898|ref|ZP_06512276.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|289760976|ref|ZP_06520354.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|297633361|ref|ZP_06951141.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 4207]
 gi|297730346|ref|ZP_06959464.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN R506]
 gi|306774968|ref|ZP_07413305.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu001]
 gi|306782118|ref|ZP_07420455.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu002]
 gi|306783512|ref|ZP_07421834.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu003]
 gi|306787876|ref|ZP_07426198.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu004]
 gi|306792217|ref|ZP_07430519.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu005]
 gi|306796615|ref|ZP_07434917.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu006]
 gi|306802502|ref|ZP_07439170.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu008]
 gi|306806684|ref|ZP_07443352.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu007]
 gi|306966881|ref|ZP_07479542.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu009]
 gi|306971075|ref|ZP_07483736.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu010]
 gi|307078803|ref|ZP_07487973.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu011]
 gi|307083362|ref|ZP_07492475.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu012]
 gi|313657672|ref|ZP_07814552.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN V2475]
 gi|81816327|sp|O53856|NARL_MYCTU RecName: Full=Probable transcriptional regulatory protein NarL
 gi|2916903|emb|CAA17650.1| POSSIBLE NITRATE/NITRITE RESPONSE TRANSCRIPTIONAL REGULATORY
           PROTEIN NARL [Mycobacterium tuberculosis H37Rv]
 gi|13880417|gb|AAK45109.1| DNA-binding response regulator, LuxR family [Mycobacterium
           tuberculosis CDC1551]
 gi|121492414|emb|CAL70882.1| Possible nitrate/nitrite response transcriptional regulatory
           protein narL [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600213|gb|EAY59223.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis C]
 gi|134149294|gb|EBA41339.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504773|gb|ABQ72582.1| putative nitrate/nitrite response transcriptional regulatory
           protein NarL [Mycobacterium tuberculosis H37Ra]
 gi|148720579|gb|ABR05204.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis F11]
 gi|224772351|dbj|BAH25157.1| putative nitrate/nitrite response transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321637|gb|ACT26240.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 1435]
 gi|289415172|gb|EFD12412.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T46]
 gi|289419367|gb|EFD16568.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CPHL_A]
 gi|289440007|gb|EFD22500.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 605]
 gi|289542560|gb|EFD46208.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T17]
 gi|289689950|gb|EFD57379.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis T92]
 gi|289693485|gb|EFD60914.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis EAS054]
 gi|289708482|gb|EFD72498.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis GM 1503]
 gi|308216464|gb|EFO75863.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu001]
 gi|308325197|gb|EFP14048.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu002]
 gi|308331675|gb|EFP20526.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu003]
 gi|308335475|gb|EFP24326.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu004]
 gi|308339273|gb|EFP28124.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu005]
 gi|308342950|gb|EFP31801.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu006]
 gi|308346834|gb|EFP35685.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu007]
 gi|308350751|gb|EFP39602.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu008]
 gi|308355412|gb|EFP44263.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu009]
 gi|308359364|gb|EFP48215.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu010]
 gi|308363271|gb|EFP52122.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu011]
 gi|308366939|gb|EFP55790.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis SUMu012]
 gi|323720707|gb|EGB29783.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis CDC1551A]
 gi|328459872|gb|AEB05295.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis KZN 4207]
          Length = 216

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 32/245 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N + ++V +V+  +       V    + S  +  +   D                GA+  
Sbjct: 3   NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADD---------------GAAAL 47

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L++  L     LD  +       +   +   E             L             
Sbjct: 48  ELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELP--------TRVLLISAHDEPAIVYQ 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   +         I   ++       ++    +  +   A               
Sbjct: 100 ALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPVAPV-- 154

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+
Sbjct: 155 ----LSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAM 210

Query: 242 RNNIV 246
           R  ++
Sbjct: 211 RQRLL 215


>gi|312890536|ref|ZP_07750072.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296994|gb|EFQ74127.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 206

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 28/232 (12%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           + + +   V         L+ ++  +     +      T+ +      ++          
Sbjct: 3   DAKLKIFIVDDHYLILQGLSSLLLDEPGFEISGVTNDSTQVL-----AMLDKCPTDILLT 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  + +    +L   +                 +   +F+             + Y    
Sbjct: 58  DISMPNMSGAELTASVVKK--------FPHIKVIALSMFNDPVIVNQMMEVGVSGYILKA 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              A +   L  +                       ++              T RE+E  
Sbjct: 110 TSKAELIKALNTVANGRTYFS---------------SLLPDEFEKNDALSRFTTREIEIF 154

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I +   + +IA  L IS  TV  +  +I+RK       G + YA  N IV
Sbjct: 155 RLIVKEFNNKQIAQKLFISERTVETHRRNILRKADAVNIVGLVKYAYENKIV 206


>gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
 gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio
           alginolyticus 40B]
          Length = 218

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   + ++  GL  +      + R     +  L  Y      +  +    + ELT 
Sbjct: 106 GIFGPGDSMDKVCQGLKAIIKGDNWLSR---RLLDQLVNYYRGREANNIIEPAIEVELTR 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           REV+ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 163 REVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 217


>gi|257095255|ref|YP_003168896.1| two component LuxR family transcriptional regulator [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047779|gb|ACV36967.1| two component transcriptional regulator, LuxR family [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 216

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D  A    L   +     +  + +   G   +   +        +D  +      
Sbjct: 10  VMVVDDHAALRAGLRSVIDSDPGLRVVLDVPSGEVAYAQYQTLRPDTVVMDLSMEGFGGI 69

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +   +         +   L   V ++              + +   D+  +   +
Sbjct: 70  EAIRRIRSRD--------PQAAILVYTVHNSRVLLERALEAGALGFVTKGSDIDTLLQAI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +  +   +  D L  +          F +  V + +   LT RE +    +SEG    
Sbjct: 122 KRIASRESFVSPDMLPAL------LDRHFPAGGVSFDR---LTQREFQVFKLLSEGHALP 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E A IL +S  TV+N+   I  K    + +     A+R  +V
Sbjct: 173 ECADILNLSSKTVSNHFTQIRAKLGVDSPAEMARIAIRQGLV 214


>gi|239994527|ref|ZP_04715051.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 206

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 29/235 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N +       V       D +A ++ L+  ++   +     E +      L        
Sbjct: 1   MNSKAPTTILIVEDQSLVRDAIAMLLSLEDDLTIVEKCSNGKEAIDY----LNDNPAPHI 56

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +      DL   +A    +           +    F          +     + 
Sbjct: 57  ILSDIEMPLVSGLDLAAHIAKQNLN--------TKVVLMTTFSKPGYIKRALSLGVKGFI 108

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D   +   +  +    ++I      E+ ++A                +  L+ +E+
Sbjct: 109 LKESDSDYLIDAIHKVSAGEKVIS----TELAIMAL-------------DDNNPLSQKEM 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L   SEG  +  IA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 152 SALKLASEGLKTQGIAQSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKGWL 206


>gi|16519697|ref|NP_443817.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
 gi|2495425|sp|P55407|TRAR_RHISN RecName: Full=Probable transcriptional activator protein traR
 gi|7465594|pir||T02771 probable transcription activator traR - Rhizobium sp. plasmid
           pNGR234a
 gi|158429605|pdb|2Q0O|A Chain A, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|158429606|pdb|2Q0O|B Chain B, Crystal Structure Of An Anti-Activation Complex In
           Bacterial Quorum Sensing
 gi|2182351|gb|AAB91637.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a
           [Sinorhizobium fredii NGR234]
          Length = 236

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 24/229 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +          + + +     G   F  ++ D  Q +         +P         S+ 
Sbjct: 14  LEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFH-----SYPGPWESIYLGSDY 68

Query: 96  DKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRI 142
                VL          F                  +     G+               +
Sbjct: 69  FNIDPVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAM 128

Query: 143 GLMLLFPKG-----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            L    P+       ++   +  ++ ++  YQ  +             L+ RE+ CL W 
Sbjct: 129 MLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKIIA-AKTVLNPKQMLSPREMLCLVWA 187

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S+GKT+   A + GI+  TV +Y+     K   ++    +A A    +V
Sbjct: 188 SKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236


>gi|282864907|ref|ZP_06273961.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560332|gb|EFB65880.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 240

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 15/234 (6%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R   V   P     LA M+     +             GA    L          +
Sbjct: 9   DPPIRLVVVDDDPLVRAGLALMLGGAPDIDIVGE-----GADGAEAESLAARLRPDVVLM 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +           +                 +    FH   + +         +    
Sbjct: 64  DIRMPGVDGLAATEALRSRPGAPE--------VVVLTTFHADEQVLRAIRAGAAGFVLKD 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              A+I   +  +     ++       +          +          +  EL  RE +
Sbjct: 116 TPPAQIVEAVRRVAAGEPVLSPAVTRRLMAHAAGRAPDDRSARRRRARQRFGELAEREQD 175

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             T +  G ++ EIA  L +S  TV  +++ ++ +     R           ++
Sbjct: 176 VATAVGRGASNAEIAAALHLSVATVKAHVSRVLARLDLNNRVQIALLVHDAGLL 229


>gi|271969981|ref|YP_003344177.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513156|gb|ACZ91434.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 60/239 (25%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + +  +   +  +  +                    G     LV   
Sbjct: 9   VGVLIVDDDPLVRAGLVMMLGGAPDIRVVAQAGD---------------GTQVLPLVDRH 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 +    F      +       
Sbjct: 54  APDVVLMDIRMPVMDGLAATEVLRARPGAPE--------VIVLTTFDADDHVLRALRAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         I   +  +     ++       +    A  +   +       +   L 
Sbjct: 106 AGFLLKDTPPDEIVTAVRQVARGYPVLSPVVTRRLIARVAD-SGHDRRRTRAGDRLALLN 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    + +G+++ EI  +L +S  TV  +++ I+ K     R           ++
Sbjct: 165 AREREVAVALGQGRSNAEIGAVLHLSVPTVKTHVSGILTKLGLNNRVQIALLVHDAGLL 223


>gi|172037420|ref|YP_001803921.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698874|gb|ACB51855.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 244

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 23/242 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     I L   +     +  + E   G   + ++         +D  +     
Sbjct: 5   RVVLIEDHDLTRIGLHAALEQVRGIEVVGEAANGRHGWEVLTHTQPDVAVIDIGLPDIDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L + +      +    L     L   +  +    +   A   + Y      +  +   
Sbjct: 65  IELSQRLK---HSQKDAELLNTKVLILTMNTSKDAVLAAFAAGADSYSIKDVTLETLVNA 121

Query: 144 LMLLFPKGRIILRDRLWEIG-------------------LLAAYQANMFKSYDVHWGKDF 184
           + +       I       +                    +          +         
Sbjct: 122 IKITHEGNAWIEPAVARVVLEQMQFDQLSATQSHAEQEVINDTRAIEALDADTQKMVDSS 181

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E+E L  I  G  + +IA  L ++  TV  ++ SI+ K     R+ A   A+R+ 
Sbjct: 182 SLTPKELEVLELIVAGCNNAQIAEALFVTVGTVKTHVRSILNKLCANDRTQAAVRALRSG 241

Query: 245 IV 246
           +V
Sbjct: 242 LV 243


>gi|182437557|ref|YP_001825276.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466073|dbj|BAG20593.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 219

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 67/242 (27%), Gaps = 32/242 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L +    +  +           R+ A            
Sbjct: 3   EDGKITVFLLDDHEVVRRGVHELLSVEADIEVVGEAGTAADALARIPAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   +++           L    +          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCREVRSQDENIKC--------LMLTSYADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WG 181
               + Y         +   +  +     ++                   +         
Sbjct: 100 MAGASGYVLKAIRGNELLNAVRDVAAGKSLLDPVATAR-------VLERLRDGGSGKGDD 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 153 KLAGLTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVA 212

Query: 242 RN 243
           R 
Sbjct: 213 RL 214


>gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
 gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223]
          Length = 224

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----- 186
            L       +  + L     R    D +  + LL  +      S      +         
Sbjct: 102 LLLAGQHGEKKAIFLTSFGNRHPSSDEIDTLYLLTPHLYMASDSIAQQSQQLHLPPPLNP 161

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+    
Sbjct: 162 LTDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---- 116
           +     +     ++  I   +   +        +      V+ +        F       
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 117 --PENITPPAGMDNRY------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
               N+T      N+Y           D       L ++  K   I  ++   EI     
Sbjct: 68  SGGYNLTRIFNESNQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVGFLV 127

Query: 168 YQANMFKSYDVHW--GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 NLHQKTLNLYSQHYQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVNFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|78067872|ref|YP_370641.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77968617|gb|ABB09997.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 271

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       +  L     +   +   +                G      V   
Sbjct: 3   LNILLVDDHAIVRQGIRQLLIDRGVARDVTEAEN---------------GGDAVAAVDKQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 48  EFDVILLDISLPDTNGIEVLKRLKRK--------LPRTPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|90426293|ref|YP_534663.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90108307|gb|ABD90344.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 223

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 75/233 (32%), Gaps = 30/233 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +       + H        A++         T  +    +               
Sbjct: 9   LIIADDHPLFRDALRHAVASVVPTAKIGEAGTFEELTAILEQEAD--------------V 54

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +     F  +     ++      V+   ++    +  +L           + 
Sbjct: 55  DLVLLDLSMPGISGFSGL-IYLRAQYPAIPVVVVSASDDVGTIRRSLDF-------GASG 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    F V +++  +  +      +  D            A           +   LT +
Sbjct: 107 FVPKRFGVEKLKDAIQKVLDGDVWVPPDI--------DLNAASDPEMTKLRDRLITLTPQ 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 159 QVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|326774042|ref|ZP_08233324.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636181|gb|EGE37085.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 241

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 17/235 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +++  +       +S +  R+D L              ++ AL E          
Sbjct: 18  LRPITVMIVDDQRATRMGLSLIINRADDLQVTAEAVHGQDALDQLAALLEE--------- 68

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R  L     +D  +      D    ++                L    +          +
Sbjct: 69  RRPLPDVVLMDVRMPVLNGIDATARISQLYPSI--------RVLVLTTYDQDEFAFGALS 120

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       A +   L  +     I+      E+                   +  
Sbjct: 121 AGASGFLLKDTRTADLHQALRAVSSGDAILTPRITRELLNRHMLSPVTSPRQRAARQRLD 180

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ RE E    +++G T+ EIA  L ++ ++V   +  I+ K   + R   +  
Sbjct: 181 DLSPREREVADLVAQGLTNAEIAQRLVLAPDSVKKNVTRILTKLDLRDRVQLVIL 235


>gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 224

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA------NMFKSYDVHWGKDFE 185
            L       +  + L     R    D +  + LL  +                       
Sbjct: 102 LLLAGQHGEKKAIFLTSFGNRHPSSDEIDTLYLLTPHLYLASDSIAHQSQQLHLPPPLNP 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+    
Sbjct: 162 LTDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|146307690|ref|YP_001188155.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145575891|gb|ABP85423.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 213

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 68/230 (29%), Gaps = 28/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R       P   + +A ++     +             G       R        +D 
Sbjct: 6   PIRVLVADDHPLLREGIAAVLTAQADIELVGEAG-----DGQEALDCFRRLRPDVTLMDL 60

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + ++ +                      +      +         Y   +  
Sbjct: 61  QMPRMNGIESIQAIRSE--------CPSARIAILTTYRGDVRALHAIQAGAQAYLLKSSL 112

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + L+    R I  +   E+   A +                 L+ REVE L  
Sbjct: 113 RKELVETIRLVAAGKRHIPAEIAAEL---AEHIGQQ------------CLSPREVEVLQA 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G ++ +IA+ L I+ +TV  ++  IM K     R+ A+A AV+  ++
Sbjct: 158 AALGYSNRDIALQLRITEDTVKGHMRLIMDKLGANNRTHAVAIAVQRGVL 207


>gi|150388326|ref|YP_001318375.1| two component LuxR family transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948188|gb|ABR46716.1| two component transcriptional regulator, LuxR family [Alkaliphilus
           metalliredigens QYMF]
          Length = 205

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 34/232 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       ++ +      +  +   +        M   +              
Sbjct: 1   MRILIVDDHPLVRKGIASILFLEKDVHEIKEAENIEEAIDMMAKFS-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      ++V                    +         + +       
Sbjct: 47  -PEITLIDLNLGRQDGLEIVNKARAKGM--------ATKFIVLTSSSKREDFLRAREAGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L ++    + I  + +        YQ +  +          ELT
Sbjct: 98  DGYILKEAFAEDILYALRIVLRGKKFIDPEVIQ-------YQTSDIRENSHLD----ELT 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE + LT + +G ++ EI   L IS +TV  ++++I+ K     R+ A  +
Sbjct: 147 PRERDVLTELGKGLSNFEIGKQLFISEHTVKKHVSNILSKLELNHRTQAALF 198


>gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 245

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 26/198 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT------------P 122
           + ++ S+   +       +       V+        P        ++             
Sbjct: 43  EILIISNHHDEWREIYRANNYQHIDPVVITALNKITPFPWDEDLLVSTQLKMSKIFNLSR 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQANMFKSY- 176
              + N Y  +  D     + L ++  +  +   D + E     + +          S  
Sbjct: 103 EHNITNGYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIENNKDKLQMTLMNIHAETISLY 162

Query: 177 --------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                   D         + RE E L W S GKT  EIA+IL I   TV  +I ++++K 
Sbjct: 163 REMIRNKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKKL 222

Query: 229 ATKTRSGAIAYAVRNNIV 246
                  AI   +   ++
Sbjct: 223 GVLNAKHAIRLGIELQLI 240


>gi|326385152|ref|ZP_08206820.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196117|gb|EGD53323.1| two-component transcriptional regulatory protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 217

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 67/237 (28%), Gaps = 29/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + L  + E     +  L      L+ +           R+ AL               
Sbjct: 3   TTVFLVDDHEVVRRGLVELLEVDPDLSVIGEAGNCSHALARVPAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      DL R +           +     L    F      +       
Sbjct: 48  RPDVAVIDVRLPDGSGIDLCRELLAK--------VPGLRCLILTSFTEDQAMLDAIMAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +           K  +   G   + T
Sbjct: 100 SGFVIKDITGMELAKAVREVGEGKSLLDNRAAAVLMERLR------KQQEQDAGPLADFT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +A R  
Sbjct: 154 QQERTLLALLGEGLTNRQIADRMHLAEKTVKNYVSRLLTKLGMERRTQAAVFATRIG 210


>gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 268

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 18/196 (9%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----------PE 118
                 D  +   +  + +             V+        P+                
Sbjct: 72  PGRTITDPYILGTYSQEWIEHYRERNYVNLDPVINVGARSLLPIDWAKLPRSSPKIQKFF 131

Query: 119 NITPPAG-MDNRYCSLTFDVARIRIGLMLLF-----PKGRIILRDRLWEIGLLAAYQANM 172
                 G                   L  +       + +    + + ++  +A +    
Sbjct: 132 GEATDFGVGRQGLTIPVRGPTNGLWALFCMTTDDTQAEWQARHYELIRDMVHVAHFIQQR 191

Query: 173 FKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          +T RE+E L+W +EGKT ++I+V++ IS+ TV  ++ S   K   
Sbjct: 192 AFEMHHQDEGIDINTITKREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYKLGA 251

Query: 231 KTRSGAIAYAVRNNIV 246
             R  A+A A+R  ++
Sbjct: 252 LNRIHAVAKAIRAGLI 267


>gi|307327703|ref|ZP_07606887.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886601|gb|EFN17603.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 233

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 12/230 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E+R   V  +    D       L   +     +  + E  GAS    V         LD 
Sbjct: 6   EERERPVIRVAVVDDEALVRSGLRLILGTAPDIDVVAECSGASAVATVLGSKADVVLLDI 65

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       ++R +  +        +          F                +     D
Sbjct: 66  RMPDADGLTVLRQLRAA---PRSPAVA-----MLTTFDVQEYLAAALRAGAAGFLLKDTD 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  L   G ++         ++  Y A   ++          LT RE E L  
Sbjct: 118 PEQLVRAVRTLAEGGSVLDPAVTR--AVIGGYLAAEAEATAAEA--VEALTPREREVLAL 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EG  + +IA  +G++ +TV +++ +++ K     R  A   A R  +V
Sbjct: 174 LGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGLV 223


>gi|331085012|ref|ZP_08334099.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408712|gb|EGG88177.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 208

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 74/217 (34%), Gaps = 17/217 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK------LDSIVSSDWPFDL 86
           + R++ +D     T  +  + E  G      +  D     +       D ++       L
Sbjct: 1   MIRLLIVDDDYLITTALKTILEAEGDLSVCGIGKDGNDAVRLYKQLQPDLLLMDIRMEHL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A  +  + Y   +         F      I         Y     D   I   + +
Sbjct: 61  DGLNAAEQILQSYPDARILL---LTTFSDDEYIIKALHLGARGYILK-QDYTGISPAIRV 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +  +  +   +    I  L       F+       + ++LT RE   +  +++G+++ EI
Sbjct: 117 VLKEQTVFGAEITTRIPKL-------FEPQKAFDYETYQLTSREFSIIELVADGRSNREI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           A  L +   TV NY++SI+ K   + R+    +  ++
Sbjct: 170 AEALYLGEGTVRNYLSSILEKLELRDRTQLAVFFYQH 206


>gi|320534446|ref|ZP_08034923.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133339|gb|EFW25810.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 244

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 65/257 (25%), Gaps = 41/257 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  ++   T  ++ L      +  +           R                  D
Sbjct: 2   IRLGLADDEPLFTMGLAMLLGAQPDMEVVWRAVDGNDALRRN---------------DDD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +                 +    F T    +       
Sbjct: 47  PVDVLLLDVQMPGLDGLAATRELMARGTT--------GRVVILTTFDTDGYVMGAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL------------------AAYQ 169
             +         +   +  +     +I       +                     A+  
Sbjct: 99  AGFLLKNTPPQDLIAAIRTVHDGDSVISPGPTRRLLTAVRTGRVSGVLPGDGAGRHASED 158

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           +           +   LT RE E L  I+ G T+ EI     +S  TV  +++ ++ KT 
Sbjct: 159 SVEAVRAAEASQQVAGLTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTG 218

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R   +  A+R  +V
Sbjct: 219 CRDRVQLVLLALRGGVV 235


>gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 242

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 15/228 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     ++ + E   G                +D  ++     
Sbjct: 13  VLIVDDHPLFRHGLRRLIEEEAGLHVVAEASTGYQAMQEAYTHRPALALVDVQLTGVTGI 72

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++VR +             R   +           +T        + +       +   +
Sbjct: 73  NVVRALKDE--------YPRMPAIVLSADLDDDLILTAVQAGAAAFVTKDVAPELLLDTI 124

Query: 145 MLLFPKGRIIL------RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             +    R I             + L     A   ++          L+ RE+E L  ++
Sbjct: 125 QRILQGERPIDVLIVSRPALARRLLLELRAVAPGDRASAPLAPGLLPLSPREMEVLDCVA 184

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ EIA  L I+  TV N+I ++ +K   + R  A+  AVR   V
Sbjct: 185 QGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDRVQALTCAVRRGWV 232


>gi|194292793|ref|YP_002008700.1| two component response regulator transcriptional regulator protein
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226697|emb|CAQ72648.1| putative TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR
           PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 226

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 69/227 (30%), Gaps = 12/227 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSD 81
           + +    D    +  L   V       A++    +    L             D  +   
Sbjct: 5   TRVLIVEDDPLALRRLVQAVDLHAADAAVSGCAASVAEALAWLAQHQPDVLLCDLGLPDG 64

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++R            V+         VF      +         Y        RI 
Sbjct: 65  SGIDVIRNARERYPACDCMVV--------TVFGDDQHVLASIEAGAIGYLLKDETTDRIA 116

Query: 142 IGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             +  L   G  +      ++   L  A      +           L+ RE E L  IS 
Sbjct: 117 ASIGELRAGGSPMSPLIARQVVNRLRGAPAEAAAREAAGAGAGAVVLSVRENEILDLISR 176

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T  E A  LG+S +TV ++I +I  K A ++R  A+  A +  ++
Sbjct: 177 GYTYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGLL 223


>gi|269469283|gb|EEZ80796.1| hypothetical protein Sup05_1368 [uncultured SUP05 cluster
           bacterium]
          Length = 209

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 14/178 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++++ +   +      V+               +         
Sbjct: 44  AVDIILLDLRMPQMSGIEVLKILKERQIP--APVV------MLTTSTEETDLRDCLKYGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   L  +     ++ +D      +LA    N     +  +     LT
Sbjct: 96  QGYLLKDMDPDELVDALNEIAKGSIVVAQDMT---HVLAKVLRNELTESEPSFE---VLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +S G ++  IA  LGIS  TV  ++ SI++K +  +R            
Sbjct: 150 NREKEVACQVSIGSSNKVIARELGISDGTVKLHVKSILKKLSLSSRVEVAVMVTEKGY 207


>gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 34/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  + +   + +         L  +           ++ AL               
Sbjct: 3   VRVLLVDDHDVVRTGLKMYLALDPDLDIVGEAANGQEAVEQVAALA-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         R +                 L         +         
Sbjct: 49  -PDVVVMDILMPVMDGITATRQIRAQ--------FPDTEVLALTSALEEHKVNGAIDAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +  +                            LT
Sbjct: 100 VGYLLKDATSDTLTEAIHAAARGEVRLHPEAAR-----------RLVRDFRSPDMREHLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +EV  L  I+ G  + EIA  LGI+  TV  +++ ++ K    +R+ A  YA++  +
Sbjct: 149 PKEVLTLQLIARGHANREIAQELGITEATVKTHVSRLLGKLGLTSRTQAALYALKAGL 206


>gi|317126429|ref|YP_004100541.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590517|gb|ADU49814.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 71/236 (30%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + L  + E     +  L   +  +  +           R+ AL               
Sbjct: 11  TKVFLLDDHEIVRRGLRDLVEAAPDMEVVGESGSAREAARRIPALL-------------- 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +           ++         +      ++      
Sbjct: 57  -PDVAVLDVRLPDGSGIEVCREIRS-----VDPRIKAL---ILTSYDDEQALVSSVLAGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   +  +     +            A    + + + + H  +   L+
Sbjct: 108 SGYLLKQLSGEGIVAAIRRVAAGEDLSD-------HPHAKALRDRWAAREEHDPRLKALS 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             E   L  I+EG T+ ++   L ++  TV NY++S++ K   +TR+ A  YA  +
Sbjct: 161 PVERRILDLIAEGLTNRQVGDRLHLAEKTVKNYVSSVLSKMGMETRTQAAVYAATH 216


>gi|289524366|ref|ZP_06441220.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502394|gb|EFD23558.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 167

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 13/173 (7%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      D  +                   +   +                 Y   
Sbjct: 2   MDITMPDMNGIDATK--------MLSQRHPHIKIIALSMHLDRGMISQVLEAGARGYILK 53

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              +     G+  +      +         +L  Y              + +L+ RE+E 
Sbjct: 54  DCSIDEFVRGIKAVSQDLVYLTPKAAK--IVLEDYL---LLKRGSVLAAENKLSPREMEV 108

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  + +G+ +  IA    IS++TV+ +  +IM K      +    YA+R  +V
Sbjct: 109 LRLLVKGEHTKSIASKPSISKSTVDTHRKNIMEKLNCANIADLTRYAIREGLV 161


>gi|167646647|ref|YP_001684310.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167349077|gb|ABZ71812.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 222

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 11/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
              +    D       L   +          E   G     + +  +     LD  +   
Sbjct: 6   APTILLADDHSIVRAGLREALESQPGWTICGEASNGRDAVRMAKELVPDVMILDISMPDL 65

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               + R +   +      +          +  +        +     +   +     I 
Sbjct: 66  SGVIVARDVRKLKTHTELLIF--------TMHDSEQLVREVLSAGARGFVLKSASTDNII 117

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L              +  L  Y +    +          LT RE+  +  ++E +
Sbjct: 118 AAVASLLNHKPYFCPGITDTV--LRGYLSPGGHALGELIEGAETLTTRELLIVQLLAESR 175

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  IA +L IS  TV ++  +IMRK    + +  + YA+RN ++
Sbjct: 176 SNKVIASMLDISVKTVESHRGNIMRKLGAHSLADIVRYAIRNKLI 220


>gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 234

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
             +        +   + +  ++    +F L R         +  V      +    + ++
Sbjct: 13  PELSRAINRTDFFRLLKSAAQHYNFDNFALARISEASAPFGERDVVITNVAERRVGLFIT 72

Query: 94  EKDKYYNVLQR--PTELFCPVFHTLPE------NITPPAGMDNRYCSLTFDVARIRIGLM 145
              +    ++      L  PV     +      ++     +   +  +       R   +
Sbjct: 73  TLKEALGTVRAKTAQFLATPVHGRSAQPEVYPSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  + +   +  + +I L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGERQEPDQSEIADILLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 76/235 (32%), Gaps = 24/235 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +D      V           R+   +        +        A        ++ 
Sbjct: 11  LLLIDDDPNLILLVKDYLEFRGY--RVTTAENGTEALAILERGANAAKAR-------EMP 61

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D ++     +  +  +    +     V+    +          + +T      + 
Sbjct: 62  DMIICDLMMPEMDGYAFLETIRRDIRFSGLPVIFLSPKGQS------QDKVTGLTAGADF 115

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y    F+   +   +     +   + +              +   +     G + ELT  
Sbjct: 116 YMVKPFEPEELVALVESSLKQAGQLPKRSTR--------IHSPDVTSLQVPG-NVELTPT 166

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E++ +  +++G  + EIA  L +S+ T+ +++++++ KT    R+    +A+ +N
Sbjct: 167 ELKVVQLVAQGLANREIAAKLNVSQRTIESHVSNMLHKTGLHNRTELSQWAIESN 221


>gi|320531246|ref|ZP_08032226.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136537|gb|EFW28505.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 241

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 16/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D    +  L+   S    +  LT      +    ++         D  +      
Sbjct: 12  LALVDDDAMALAHLESYFSDVEDLKVLTATRSPRAVLRFLQSHQVDVLITDVHMEHMDGV 71

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ R +                 +      T  + +       + +   +     I   +
Sbjct: 72  EMTREVLRLS--------PSTRVILLTTVDTDEDLLQGLGAGASGFLLKSAPAEEIIAAV 123

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +++       +        +   +          L+ RE + L  + EG ++ 
Sbjct: 124 RTVHSGAKVVAPTPTTRLI-------DYALASVRGADGSVHLSERERDVLHLLCEGASNR 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA +L I+  TV ++I  +  KT T +R   + +A ++  
Sbjct: 177 KIASLLAIAEATVKSHITGLFHKTGTASRLEIVVWAFKHGY 217


>gi|296156364|ref|ZP_06839202.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295892963|gb|EFG72743.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 218

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 57/226 (25%), Gaps = 20/226 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSI 77
            +  ++ L    D       L   +     +  + E   G     L          +D  
Sbjct: 4   TSPAIARLILVDDHPLVRDGLRARLEAVRNLEVVGEAGNGQEALALAASAEPHLVLMDVG 63

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           ++      L               ++            L           + Y       
Sbjct: 64  MNGMNGIALAGMFHERF-----PAIRVLMLSM---HDNLEYVTQAVRAGASGYVLKDSPA 115

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +                                      LT RE + L  +
Sbjct: 116 TEIIQAIGAVLEGKSFFSAG-----------LGARLIQASATQSPVERLTPRERDILDAL 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +EG +S +IA    +S  TV  +  ++ RK   + ++  I +AV N
Sbjct: 165 AEGLSSKQIAQRNELSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|258655183|ref|YP_003204339.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258558408|gb|ACV81350.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 217

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 65/228 (28%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            S  + +    D       L   +     +  + E   GA    L R        LD  +
Sbjct: 1   MSAPTRILLADDHTLVRRGLRLILDGEPDLQVVAEAGDGAQAVELARHGEIDLAILDIAM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                    R ++    D           L   ++                Y   +    
Sbjct: 61  PRMTGLQAARELSRRGSD--------VRVLMLSMYDNEQYFFESLKAGACGYVLKSVADR 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +             +         L+  Y     +        D  LT RE E +  I+
Sbjct: 113 ELVQACRAAVRGDPFVCAGAT--SALIQDYLR---RQRSGERIPDSILTAREEEVVKMIA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG +S  IA  L IS  TV+ + A+++ K     R     +A+R  ++
Sbjct: 168 EGHSSRAIADALVISVKTVDRHRANVLHKLGLHDRLALTRFAIRAGLI 215


>gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 NLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans]
 gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans]
 gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 NLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|307328219|ref|ZP_07607397.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886053|gb|EFN17061.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 229

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 63/189 (33%), Gaps = 6/189 (3%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           VG +  +     + +E K D  +      D     A +    +   +            +
Sbjct: 36  VGWADSVAETVPMAKELKPDVALVDFRLPDGTGADAAAGIRAHDPSVAIV---ILSADAS 92

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               +         Y   +     I   +        +I    L E+  LA +     +S
Sbjct: 93  DSALLAAVEAGACGYLLKSASGDEIASAIRSAAEGETLIPASTLVEV--LARH-REDARS 149

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +   +T RE E LT +S+G  +  +A  L IS  TV  ++  I+ K   +++  
Sbjct: 150 TAEQNERLDSMTPREQEILTLMSQGLDNRAVAERLSISYATVRTHVRRILEKLDARSQLE 209

Query: 236 AIAYAVRNN 244
           A+A A    
Sbjct: 210 AVARAAEFG 218


>gi|288961577|ref|YP_003451887.1| two-component response regulator [Azospirillum sp. B510]
 gi|288913857|dbj|BAI75343.1| two-component response regulator [Azospirillum sp. B510]
          Length = 217

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 65/216 (30%), Gaps = 14/216 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D +     L   +          E        L+     +++  D +++      
Sbjct: 3   ILIGDDHVLFREGLRRLLEQLRENATFAEASNFDE--LLDMAASKDEAYDLVLTDLRMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                 +          +              +           Y   +  V  +   L 
Sbjct: 61  WPGFSGIGMLRDRQPNAKVVVVS---ASEAQSDVREALENGAAGYIPKSSSVKIMLSALD 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----TGREVECLTWISEGK 201
           L+F  G  +    L E       + +      V    D +L    T R+ E L  + EGK
Sbjct: 118 LIFSGGVYVPATVLRE-----GAEPDQRSGGGVIPPTDPQLEQLLTQRQREVLDRLREGK 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++ +IA  LG+S  TV  ++ +I +    + R+ A 
Sbjct: 173 SNKQIAHELGLSEGTVKIHMTAIFKSLGVRNRTQAA 208


>gi|284041634|ref|YP_003391974.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945855|gb|ADB48599.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 213

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 28/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V    +R   +  +                    G     L    
Sbjct: 3   IRVLVVEDFPLVRDGVVDALSRDPGIEVVGAAVD---------------GREGLALAHEL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++  +           L     +           +   A   
Sbjct: 48  RPDVIVLDLHMPEIGGMMVLERLRTE--------LPSAKSIVMTATEKAEPLLDAIAAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +R  ++ +   G +I       +        +   + +    +  +LT
Sbjct: 100 AGYLTKRTSGEELRQAILTVHGGGSVIAPQLAPHL----LQAYSRASTGEAPDVRK-KLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             E E L  +++G T  +IA  L +S  TV N++A I  KT+ + RS    +AV +
Sbjct: 155 ATEHEVLRLVAQGMTDRQIAERLFVSPRTVQNHLARIREKTSMRRRSDLARWAVLH 210


>gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45]
 gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45]
          Length = 253

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 72/243 (29%), Gaps = 31/243 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRC 89
           R+             +   + VG    +     +      D  + S     +   ++ + 
Sbjct: 11  RLSEGSHLGQRVDAAFRQMQGVGFDGMIYDYTPMVSGPGADVPIPSVFEQRNLGDEMRQH 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENIT------------------PPAGMDNRYC 131
            +  E  +   V +       P   +   +I                       + +   
Sbjct: 71  WSEDEYIRLDPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLREREVFSGVT 130

Query: 132 SLTFDVARIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKD---- 183
                       +  +    R          + ++ L+A               +D    
Sbjct: 131 VPIHLPNGDFATVTGVSLGRRQNWSGGTSRAIADLSLIAHLFNQSAVELLGFDHEDGTQE 190

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE ECLT+ S G ++ E A I+  S  TV  ++ + MRK   + R+ A+  A R 
Sbjct: 191 VRLTPRERECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAVTIATRR 250

Query: 244 NIV 246
            ++
Sbjct: 251 RLI 253


>gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 202

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 39/238 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +    +S ++ L    D L  +                    G + +L +   
Sbjct: 2   ITLYLAEDQSMLSSALAQLLNLEDDLKVLGTSGD---------------GQTDWLDINRL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +  +              +    F              
Sbjct: 47  KPDIAILDIEMPKAAGLDVADDILAAHL--------ATKVIILTTFAQKAYFARAVKAKV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     I   + +  +   A                D  L+
Sbjct: 99  SGYLLKDSPSDDLVTAIRNVMAGQTIYDPELVRNMVNAA----------------DNPLS 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  L   ++G T+ EIA  L +S  TV NY+++I  K     R  A+  A  N  
Sbjct: 143 DQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKNNKW 200


>gi|221069285|ref|ZP_03545390.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|220714308|gb|EED69676.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
          Length = 212

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +      +  ++             ++   T              
Sbjct: 2   IHVVLCDDHAILRRGIRDTLAEATDISVTAEAGSYAELREQLRDAT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  +        ++       P        +       
Sbjct: 48  -CDVLLLDINMPGRSGLEVLASVRETH-----PQIRVIMVSMYP---EDQYALRSIKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    + +  +      +LA   A               L+
Sbjct: 99  AGYANKAGDPVLLIDAVRTVHSGRKYLTAEVA---QMLADSLAQPAAPV-----PHETLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G+   EIA  L +S  TV+ Y A ++ K    + +   AYA++N ++
Sbjct: 151 EREMQTLLKIASGQRQTEIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGLI 209


>gi|292491638|ref|YP_003527077.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291580233|gb|ADE14690.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 206

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 57/216 (26%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFDLVRC 89
           +D   S    +  L + VG                         LD  +     FDL   
Sbjct: 9   VDDDASIRRSLERLIKSVGFQVESFASAQEFLRREPTIRPAGLVLDVRMPGPSGFDLQDK 68

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A         ++        P+       +    G    + +   D   +   +     
Sbjct: 69  LAF--LHCNLPIIFITGHGTIPLS------VRAMKGGAIEFLTKPLDEQYLLDAIHKA-- 118

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                          L                +   LT RE E    +  G  + +IA  
Sbjct: 119 -------------VELNRQAMQEQVKITEVQQRLTSLTPRESEVFKLVITGLLNKQIAFK 165

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LG S  T+  + A +M K   K+ +  +  A +  I
Sbjct: 166 LGRSEKTIKVHRARVMEKMQAKSLAQLVRLAEKMGI 201


>gi|302536960|ref|ZP_07289302.1| response regulator [Streptomyces sp. C]
 gi|302445855|gb|EFL17671.1| response regulator [Streptomyces sp. C]
          Length = 217

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 61/223 (27%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D  A    L   +     +  + E   G     L          +D  +     
Sbjct: 4   RVLVAEDQRAVRAGLVLILRSAGDVEVVGEAADGEEAVRLADELRPDLVLMDVQMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 L    F                +     D A +   
Sbjct: 64  VSATRQVVERGLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKDADAAELIAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           +  +     +I       +    A    +            E LT RE E L  + EG +
Sbjct: 115 VRTVARGEGLIAPAVTRRLIAEFAAPKAVRAPVRPGAAAAVESLTRREREVLGALGEGLS 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIAV L ++  TV  +++ ++ K   ++R  A   A    I
Sbjct: 175 NAEIAVRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI 217


>gi|108801090|ref|YP_641287.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|108771509|gb|ABG10231.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
          Length = 220

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 67/232 (28%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L +    L  +   D   S   R+  L               
Sbjct: 7   VRVFLVDDHEVVRRGLIDLLSADPELDVVGEADSVASALARIPTL--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 52  QPDVAVLDVRLPDGNGIELCRDLLSRLPDLRC--------LMLTSFTSDEAMLDAILAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +        +  +           L+
Sbjct: 104 SGFVVKDIKGMELAQAIKDVGAGRSLLDNRAAAAL-------MSKLRGDVERSDPLSGLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +
Sbjct: 157 AQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVF 208


>gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
 gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
          Length = 254

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 73/224 (32%), Gaps = 12/224 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRCMA 91
           R++ +D        + A  E  G                ++ L  +V SD          
Sbjct: 30  RLLLVDDEPGLRSAVQAYLEDEGFQITTASDGQEGWEKAQEILPDLVISDVMMPRCDGYK 89

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L +  +    L     +F        + I       + Y    FD   + + +  +  + 
Sbjct: 90  LLKLLRTDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDELVVRVRNVVRRQ 149

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---------FELTGREVECLTWISEGKT 202
             +L +          + A            +          + T RE   L  ++EG  
Sbjct: 150 ERLLTEAARFADADIGHMAKQITEIRSLLAGNKKKLAEAVLHDFTPREASVLQLVAEGMM 209

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L  S   V  Y++ +  KT T +R+  + YA+ +++V
Sbjct: 210 NKEIARRLETSIRNVEKYVSRLFVKTTTSSRTELVRYALEHSLV 253


>gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 208

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 23/209 (11%)

Query: 37  IPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRCMALSE 94
             L   +     +  + E   G      V     Q   +D  + +     + +R +    
Sbjct: 17  AGLRALLDSQPDIEVIAEAGTGEEAVDAVSAFRPQLVTMDLALGAGIDGVEAIRRIRQ-- 74

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
                 V +    L    + T  + +         Y         I   +        ++
Sbjct: 75  ------VDRALPVLVFTTYDTDADVVRAIDAGAIGYLLKDSTPQEIFAAVRGAAAGQSVL 128

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                  +                    +  LT RE E LT ++EG T+ E+   L IS 
Sbjct: 129 SPPVASRL-------------LQQMQRPEEALTPREAELLTLMAEGMTNKELGKALFISE 175

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            TV  ++A I  K    TR+ A++ A+R 
Sbjct: 176 ATVKTHLAHIYAKLGVDTRAAAVSVALRR 204


>gi|307825160|ref|ZP_07655381.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307733908|gb|EFO04764.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +      +               +       G +  LL    
Sbjct: 2   IKVLIVDDHAIVRRGLKQILADIPDMEVFGEAASGDEALRFIR----DQGWNIMLL---- 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L++             L        P        I       
Sbjct: 54  -------DIAMPGKNVMELIKL-----AKHQSPHLPILILSMYP---EDQYAIRMLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +      ++   +  +   G+ I      ++            + +        LT
Sbjct: 99  DGYLTKESAPEQLVEAIRKVAKGGKYISPAMTEKLI--------AELNPNQEIPLHNTLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    I  GK+  ++A  + +S  T++ Y   +M+K      +  I YA +N+++
Sbjct: 151 DREFQVFCGICAGKSITDLAQQMTLSIKTISTYRTRLMKKMNMSKNAEIIHYAFKNDLL 209


>gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
 gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
          Length = 248

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 13/182 (7%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGM 126
           +++  +P + +         +   + +     F   F               +      +
Sbjct: 65  VMNISYPEEWLITYKRKNFCQVDPIAKENFSNFELQFWEDTYKKWNPPKEFISAARDFNL 124

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDF 184
            N       ++      L  +  K         + I  L  +    F +         +F
Sbjct: 125 YNGIACGVRNLKSTEGSLFSVAGKLEN-HPREKFIIENLTPHLHTAFTTYLSKTKAPVNF 183

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L W+ +GK+S +I+VIL IS  TV  ++ +IM K    +R+ A+A A+   
Sbjct: 184 ELSKREIEVLNWVKKGKSSWDISVILAISVRTVKFHVENIMVKLNAVSRTHAVAIALSAG 243

Query: 245 IV 246
           ++
Sbjct: 244 VI 245


>gi|319795407|ref|YP_004157047.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597870|gb|ADU38936.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    S  + +    E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLRQFFSEHVDLRVAGEAASGREAIELVRTTELDVLVMDLSMPGQSGIDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        +       + Y +   D   I   +  +
Sbjct: 67  AMIRAK-----APDVGILILSGYP---EEHYAMNLIRQGASGYLNKECDPIEIVNAIRTI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I       +                      +L+ RE +    +++G+T+ +IA
Sbjct: 119 SLGRRYITPAVAELLA--------RQLDRKDDAAPHEQLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 171 KTLSLSVKTVSTYRTRLMEKMNLSSNSDLTYYALKNKLI 209


>gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 199

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +++   + ++ +   G     L+  +      LD  + +    
Sbjct: 3   LLVAEDQSMLRDAMCQLLAFQADVESVLQAKNGQEAIQLLEKESVDIAILDVEMPAKTGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++  +   + +    V+          F              + Y      +A +   L
Sbjct: 63  EVLEWIRAEKLETKVVVV--------TTFKRPGYFERAIKAGVDAYVLKERSIADLMQTL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +    + +                 +V       LT +E+  L  I++G ++ 
Sbjct: 115 HTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGLSNQ 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 158 EIADQLYLSNGTVRNYVTNILSKLNAGNRTEAANIAKESGWL 199


>gi|212702417|ref|ZP_03310545.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098]
 gi|212674078|gb|EEB34561.1| hypothetical protein DESPIG_00433 [Desulfovibrio piger ATCC 29098]
          Length = 222

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 63/226 (27%), Gaps = 11/226 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D    M  +   ++    +        G     L          +D  +   
Sbjct: 4   VCRILLVDDHKLLMEGIRSLLAPHSHLRVAGMAPDGKEAVGLAATLSPDLVIMDISMPGM 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +            +            L E I         +   +   + + 
Sbjct: 64  NGVEASRAILQIR-----PETRILIYTGHEDQRHLLELIQL---GIMGHVCKSDPPSVLL 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200
             +  +      +         + A  + N  +      G D   L+ RE E    +++G
Sbjct: 116 QAIDAVRQGEVFLS-CADPGGCMAALMRQNRQRLSPAEGGPDIGMLSPREKEIFRLLADG 174

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I   L IS  TV  +  S++ K    + +     A+R  +V
Sbjct: 175 YSVRQIGDALNISPKTVETHKYSVLTKLRASSINELTKMAIRLGLV 220


>gi|83721309|ref|YP_440767.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167617547|ref|ZP_02386178.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257140582|ref|ZP_05588844.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83655134|gb|ABC39197.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 218

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L     +   ++  +                G     +V   
Sbjct: 3   LQILLVDDHAIVRQGIRQLLIDRGIAREVVEAE---------------CGGEALAIVEKG 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 48  EFDVVLLDISLPDMNGIEVLKRLKRR--------LPRTPVLMFSMYREDQFAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMVSAISQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMIASGKRLTDIAHALSLSVKTVSVYRTRLLEKMKLSNNAELTFYVMSNRLV 210


>gi|71906669|ref|YP_284256.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71846290|gb|AAZ45786.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 215

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 64/246 (26%), Gaps = 33/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN  +Q   I+L  +          L         +   D                G S 
Sbjct: 1   MNKSLQGKRILLADDHAVVRLG-FRLLLEGAGATVIAETDN---------------GESA 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          +D  +        +  +             +   L     +     I
Sbjct: 45  VRLYAETNPDVVVMDVSMPGIGGLVALERL----LVWEA----KARVLMLSAHNDDIVPI 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y             +  +    R I  +    + L                
Sbjct: 97  RALRLGARGYLCKRAAPEEFLRAVGQVAADQRYIDPELAQAVAL---------AQLSGSA 147

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT +E+     ++EG++ +E+A    +S +TV  ++  I +K   +  +     A
Sbjct: 148 NPVETLTEKELAVFLKLAEGRSVNEVADDFCLSPSTVGTHLYHIKQKLNVQNAAELTLVA 207

Query: 241 VRNNIV 246
           VRN ++
Sbjct: 208 VRNGLL 213


>gi|38234861|ref|NP_940628.1| two-component response regulator ChrA [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38201125|emb|CAE50849.1| two-component response regulator ChrA [Corynebacterium diphtheriae]
          Length = 199

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 29/221 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-------FQEQKLDSIVSSDWPFD 85
           + R++ +D        + ++ +       +    D              D  +       
Sbjct: 1   MIRVMLIDDHPVVRAGLRSILDSFDDITVVAEASDGSNINTKGIDVVVTDIQMPGTDGIT 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R +A +              L    + T  + +         Y       + +   ++
Sbjct: 61  LTRALASAGGPP---------VLILTTYDTEADILAAVEAGAMGYLLKDAPESALHDAVI 111

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             F   R +       +                       L+ RE+E L  + +G ++ +
Sbjct: 112 ATFEGRRTLAPKVANAL-------------MQRVSKPRQALSAREIEILQNLEQGLSNRQ 158

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +A  L IS  TV  ++  I  K     R+ AI  A +  ++
Sbjct: 159 LAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199


>gi|302868391|ref|YP_003837028.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302571250|gb|ADL47452.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 212

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 21/223 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            D+  R++  D        + A+ E       V  +           E  +D ++     
Sbjct: 3   DDVPVRLLLADDHPVVRAGLRAVLETEPGLVVVAEAATAEEAVTRAGEGDIDVVLMDLQF 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +     + +       + P  L    + +  + +         Y         +   
Sbjct: 63  GKGMGGAEATARITARP--EAPRVLIVTTYDSDADTLPAIEAGATGYLLKDAPPEDLAAA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +          +A    N  ++          LT RE E L  +++G ++
Sbjct: 121 VRTAAAGRTTLAP-------TVANRLMNRLRTPGTA------LTRRETEVLALVADGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   L ++  TV +++A I  K    +R+ A+A A    ++
Sbjct: 168 HSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210


>gi|290957348|ref|YP_003488530.1| two-component chitin response regulator [Streptomyces scabiei
           87.22]
 gi|260646874|emb|CBG69971.1| two-component chitin response regulator [Streptomyces scabiei
           87.22]
          Length = 210

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 60/219 (27%), Gaps = 12/219 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D  A    L   +     +  + E   G     L R        +D  +       
Sbjct: 2   LVAEDQSAVRAGLVLILRSAPDIEVVGEAADGERAVALARELRPDLVLMDVQMPRLDGVS 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +                 L    F                +     +   +   + 
Sbjct: 62  ATRQVVAEGLAD---------VLVLTTFDLDEYVFGALRAGAAGFLLKNTEARDLIEAVR 112

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     +I       +  +A + A   +   V       LT RE E L  +  G ++ E
Sbjct: 113 AVGRGEGLIAPAVTRRL--IAEFAAGPAREPAVDPAVLDSLTRREREVLGALGAGLSNAE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  L ++  TV  +++ ++ K   ++R  A   A    
Sbjct: 171 IAGRLDMAEATVKTHVSRLLGKLDLRSRVQAAVLARELG 209


>gi|253998458|ref|YP_003050521.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200533|ref|YP_004039191.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985137|gb|ACT49994.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439849|gb|ADQ83955.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 214

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       +  + + ++ +  +               L              
Sbjct: 6   KIKVIIADDHAILREGLKQILSETEDIEVIAEAQNASEAIHYACKL-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      D +R +                 L   +       I      
Sbjct: 52  -EADVLLLDISLPDRSGIDALRYIKKENTKI--------AILMLSMHREDQYAIRSLKAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       + +   + ++    + I  +    +   A    +  K           L
Sbjct: 103 AAGYLGKQGASSELVNAIRVIAKGKKYITPEVADAL---ANQVMDTEKPL------HESL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + LT I+ G T  EIA+ L +S  TV+ Y   ++ K   K  +    YA++NN+V
Sbjct: 154 SDREFQTLTLIASGLTVGEIALRLSLSVKTVSMYRTRLLEKMQLKHNAELTHYAIKNNLV 213


>gi|239906183|ref|YP_002952922.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239796047|dbj|BAH75036.1| NarL family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 220

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       L   +        + E   G +   LV     +   LD  +    
Sbjct: 4   TRIILADDHTVLRTGLRLLIDNQPDFTVVGEAADGEALLALVERVPAEVLVLDLSMPRVS 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + ++ +    ++    VL           H         A     Y       + + +
Sbjct: 64  GLECIKELKSRGQEIKILVL---------TMHGREYVKEAMAAGALGYIEKQALDSELFV 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R +  D    +                       LT RE E L  +  G T
Sbjct: 115 AIRTVASGRRYMSPDNAEVLLDQLLSPT----PQAASPDPYAVLTAREREVLKLLVRGHT 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +IA +L +S  T++ +   +M K     +S  + YA+R+ ++
Sbjct: 171 LTQIAGLLHLSVKTIDTHKTHVMEKLNLTHKSQLVDYALRHGLL 214


>gi|110680738|ref|YP_683745.1| LuxR family DNA-binding response regulator [Roseobacter
           denitrificans OCh 114]
 gi|109456854|gb|ABG33059.1| DNA-binding response regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 204

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 66/237 (27%), Gaps = 35/237 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S         A +                 +  G +   L    
Sbjct: 1   MRILLADDHGLVRDTISAYLETEGRAAVIA---------------VQDYGEAMKTLRSKG 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D +     S  ++ + +L                     A   
Sbjct: 46  PFDLVLLDFGMPGMNGLDGLSEAIKSHPNQPFAILSGTAPNRI--------AQQAVARGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   +  +      +    L E G     +                L+
Sbjct: 98  IGYLPKSMGAKSLVNAVRFMIAGETYVPASLLGESGETGETEFTKK------------LS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE + L+ +  GK++ EIA  L +   T+  ++ ++ +K   K R+ A   A    
Sbjct: 146 RREKQVLSGLCNGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARNAG 202


>gi|119715554|ref|YP_922519.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536215|gb|ABL80832.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 58/243 (23%), Gaps = 28/243 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +D    S +S +      +  +                    G     L    
Sbjct: 5   TTVLLVDDDPLVRSALSLMLGGQSDIEVVGEAAD---------------GHEGVRLAAEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +                 +    F      +   A   
Sbjct: 50  RPDVVLMDIRMPRLDGLGATRELHARPAPP--------RVIVLTTFDADEHVVEALAAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-----HWGK 182
           + +        +I   +  +     ++       +      + +               +
Sbjct: 102 DGFLLKDTAPPQIIEAIRKVVDDEPMLSPSVTRTLIRRLRDEPDAAADVAAARTAEAQSR 161

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE +    +  G ++ EIA  L +S  TV  +++ +  K     R         
Sbjct: 162 LALLTDRERDVALAVGRGLSNAEIAGDLYLSVPTVKAHVSRLFDKLQVTNRVQIAICVHD 221

Query: 243 NNI 245
             +
Sbjct: 222 AGL 224


>gi|331699431|ref|YP_004335670.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954120|gb|AEA27817.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 215

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 66/246 (26%), Gaps = 32/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     +V +V+  +       V+   T S  +  +   D        +           
Sbjct: 1   MESSDARVRVVVADDHPFFRDGVARGLTTSGRVEVVAEADDGRQALDAIRE--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +       +VR                   L            
Sbjct: 52  ------HSPDVALVDYEMPDIDGLGVVRATVRDGL--------ATRVLLLSAHTDSAVVF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y +     A I   ++ +     ++  +    +   A       ++     
Sbjct: 98  QALQEGAAGYLAKDSRRAEIVAAVLDVAKGRTVVPPELAAGL---AGEIRMRAQTTGPA- 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE E L   + G +  ++A  L I  +TV  ++  +  K     R+ A+A  
Sbjct: 154 -----LSEREREVLQAFARGLSVPQVAGELFIGVSTVKTHVQRLYEKLGVSDRAAAVAEG 208

Query: 241 VRNNIV 246
           +R  +V
Sbjct: 209 MRRGLV 214


>gi|258653570|ref|YP_003202726.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556795|gb|ACV79737.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 221

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 15/229 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R   V   P   D LA ++           +         +  +     +  +Q+  
Sbjct: 3   EPIRVLIVDDHPVFRDGLAALL------DPLEGITVTGRVADGAQAVAATVSVPADQRPH 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++       L    A     +    +                  +        Y     
Sbjct: 57  VVIMDIQMPVLNGIEATRRIVQATPEVGVLVVTMG---EDDATVFSAVRAGARGYLLKGA 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   G +        +              +       +LT RE E L 
Sbjct: 114 GQDEVVRAIGTVHAGGVVFGASLAARVT------RAFAAPDNPRAAAFPQLTDREREVLD 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            I+ G+T+ +IA  L +S  TV N +++I+ K     R+  I  A    
Sbjct: 168 LIAAGRTNAQIAAELFLSGKTVRNNVSTILSKLQAGDRANVIIRARDAG 216


>gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 223

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 76/237 (32%), Gaps = 19/237 (8%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q  +  N   E        L    D    ++ +   + +      +T   G     ++ 
Sbjct: 5   PQFRLRTNGMKESNPGEQKKLLLIDDDPNLILLVKDYLEFRGY-QVVTAGNGREALTMLP 63

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D ++     +  V  +       +  +L    +          + +     
Sbjct: 64  ELSPDMIICDVMMPEMDGYAFVEQIRQDPSKSWIPILFLSAKGQS------QDRVKGLTT 117

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DF 184
             + Y    F+   +   +              L +   L  +Q     S        D 
Sbjct: 118 GADVYMVKPFEPEELVAQV-----------ESSLKQANRLIHHQNKGSSSMPTIQVPFDV 166

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ELT  E++ + +++ G  + +IA  L +S+ T+ +++++++ KT    R+    +AV
Sbjct: 167 ELTPTELKVVQFVARGMANRQIADELRVSQRTIESHVSNMLGKTGLHNRTELARWAV 223


>gi|157962120|ref|YP_001502154.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847120|gb|ABV87619.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 221

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 82/241 (34%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ I+L  +     + +  L      +  +      +     + A              
Sbjct: 3   EKITIILVDDHILVRAGIRSLLESIANVEVIQESGDGIEALSLLRA-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      ++ R +   +         +   L   +   +         
Sbjct: 49  -HEPTLLILDISLPGLNGLEVARSVTKMKT--------KTKILMLSMHSDIEYVAKALTI 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y      V  +   +  L    + I ++   ++ ++   + +  +  D+       
Sbjct: 100 GSHGYLMKESAVDELETAISTLMSDKQYIGKNI--DLQMVDKLKGDSNQDSDLIE----L 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ + L  I+EG ++ EIA+ + +S  TV  + A IM +      +G + +A+R+ +
Sbjct: 154 LTSRQRQILQLIAEGYSTREIALRMNVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRSKL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|309792094|ref|ZP_07686568.1| two-component system response regulator [Oscillochloris trichoides
           DG6]
 gi|308225901|gb|EFO79655.1| two-component system response regulator [Oscillochloris trichoides
           DG6]
          Length = 215

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   ++    +  + +   G       R    Q   LD  +     
Sbjct: 3   RVLIVDDHAVVRHGIQSMLTLEDDIEVVGDADSGMQAVEKARSLHPQVVLLDLKMPGMGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +          V  R   L         + +       + Y         +   
Sbjct: 63  ALTCRAVKE--------VSPRSRVLILTGVDAEQDVMNALEHDADGYLLKDAPAEELLHA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++      +       +    +      +            T RE++ L  ++  +++
Sbjct: 115 IRVVASGQAYLQPSITRRVLRRLSSSNAPQQPLLPPQL-----TPRELDVLRLMATSRSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  + ++  TV ++I SI+ K     R  A+  A+R  I+
Sbjct: 170 KEMAEAMTVTEETVRSHIKSILNKLRQPNRMQAVLMALRLGII 212


>gi|302520045|ref|ZP_07272387.1| response regulatory protein [Streptomyces sp. SPB78]
 gi|318061142|ref|ZP_07979863.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318079227|ref|ZP_07986559.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|302428940|gb|EFL00756.1| response regulatory protein [Streptomyces sp. SPB78]
          Length = 220

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 33/240 (13%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWD 67
            T   +  P   D   R++  D        + AL               G     L    
Sbjct: 1   MTDATATGPATHDTPVRLLLCDDHAVVRAGLRALLASAAGIEVSGEAGSGEEAVALAAKL 60

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 +D  +       +  R +                 L    + T  +        
Sbjct: 61  RPDLVLMDLQLGPGIDGVEATRRLLALPAPP--------RVLVLTTYDTDADVTRAVNAG 112

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +         +          +A       ++         EL
Sbjct: 113 ATGYLLKAERPEELFAAIHAAAQGRTALSP-------PVAHRVLAHLRAPRP------EL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  +S+G  + +IA  L IS  TV  ++  + +K    TR+GA+A A    ++
Sbjct: 160 TPRERDILAQLSQGLGNRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 219


>gi|291615036|ref|YP_003525193.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291585148|gb|ADE12806.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 228

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 71/240 (29%), Gaps = 23/240 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       + ++  +      ++                        L+   
Sbjct: 2   KIKVLMADDHALFRDGMRYVLQQLADEVEILDSGNFQDALQ--------------LVHDN 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        ++   L         +               +  +     
Sbjct: 48  PDVDLALLDLNMPGSEGVPSIQFFHLRH-----PDIPLVVVSG---SDHRDDIESVMESG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              + S       +   L ++   G  +    L +  +    Q     S        F L
Sbjct: 100 AMGFISKMSSSKIMLSALRMVLEGGVYLPPQLLQQ-AVNNVDQGESLSSKRSQRAAKFGL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T R++E LT+++ G  + EI+  + ++  TV  + A++ +     +R  A++ A R   +
Sbjct: 159 TSRQLEVLTYLASGLANKEISKRMNLAEGTVKIHTAAVYQALHANSRLEAVSAARRLGFL 218


>gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli Kim 5]
          Length = 234

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + A  ++    +F L R            +V +  P   V     
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITSVPERRVGLFIA 72

Query: 93  SEKDKYYNVLQRPTE-LFCPVFHTLPE------NITPPAGMDNRYCSLTFDVARIRIGLM 145
           + K+    V  +  + L  PV     E      +          +  +       R   +
Sbjct: 73  TLKETLGTVRAKSAQFLATPVHGRSAEPDTYPSDRLFNEFRSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  +     +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|110835015|ref|YP_693874.1| transcriptional regulator DegU [Alcanivorax borkumensis SK2]
 gi|110648126|emb|CAL17602.1| transcriptional regulatory protein degu (protease production
           enhancer protein) [Alcanivorax borkumensis SK2]
          Length = 216

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 29/230 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +     + +      S   A +   D          A  E +G          
Sbjct: 2   TTILIADDHPLFRAALKQAVDTSFSGAAIHEADSL--------ATLEELGQQGI------ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +     F  +      +  K   V+   TE    +               
Sbjct: 48  PFDVILLDLHMPGTHGFSGL-VYLREQYKKVPLVVISATEDVDVI-------QRAIHFGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +  V  +   +  +    R +       +             +     +   LT
Sbjct: 100 DGFIPKSASVDTMTQAMRKIMDGERWLPEKARRAMPP-------TLPDHSAMSDRITSLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   +  + EG  +  IA  L +S  TV  ++ +I RK   + R+ A+
Sbjct: 153 PQQFRVMGMLMEGMQNKVIAYELDVSEATVKAHMTAIFRKLGVRNRTQAV 202


>gi|8708904|gb|AAF78795.1| putative two-component system transcriptional response regulator
           TcsR [Bradyrhizobium japonicum]
          Length = 223

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 30/240 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                 ++V+  +       +          AR+         T  +   ++        
Sbjct: 1   MNAPSTHLVIADDHPLFRDALRQAVASVLTSARIDEAGSFEDLTKLLEQTSD-------- 52

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +     F  +     ++      V+   ++    +  +L      
Sbjct: 53  ------VDLILLDLSMPGISGFSGL-IYLRAQYPAIPVVIVSASDDSATIRRSLDF---- 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +    F V  +R  ++ +      +  D            A           +
Sbjct: 102 ---GASGFIPKRFGVESVRDAILKVMEGDVWVPADT--------DLSAATDPDMTRLRDR 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A R
Sbjct: 151 LVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAR 210


>gi|115526773|ref|YP_783684.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115520720|gb|ABJ08704.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 223

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 30/233 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +       + H        A++         T  +   ++               
Sbjct: 9   LIIADDHPLFRDALRHAVASVIASAKVSEAGTFEELTGMLERESD--------------V 54

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +     F  +     ++      V+   ++    +  +L           + 
Sbjct: 55  DLVLLDLSMPGISGFSGL-IYLRAQYPAIPVVIVSASDDVGTIRRSLDF-------GASG 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    + V  +R  +  +      I  D                        +   LT +
Sbjct: 107 FVPKRYGVDMLREAIQKVLDGDVFIPSDIDLNAA--------SDPEMTKLRDRLVTLTPQ 158

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +V  L  +SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 159 QVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|329911478|ref|ZP_08275542.1| DNA binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545881|gb|EGF30991.1| DNA binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 214

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 15/221 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D +         +  T  +  + E   A    L      Q  + D +V      +
Sbjct: 7   VMLVDDHMVVRFGFRMLLDATPDIRVIAEADSADAAYL----QLQTCQPDVVVMDISFGE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +  +   +     +    L                     Y S       +   + 
Sbjct: 63  GSTGVDATR--RLLARDKHLKVLGLSSHENPSYVRFMLKAGALGYLSKRSAPDELIHAIR 120

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      +       + L         + +D        L+ RE      +++G + ++
Sbjct: 121 QVASGRMYLDAHVSQRLAL---------QEFDGAKNPLEILSEREFGVFIQLAKGLSVNQ 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IAV L IS  T   ++  + +K     ++     AVR+ ++
Sbjct: 172 IAVDLNISPRTAGTHLYHVKQKLGAGNQAELALIAVRHGLI 212


>gi|226307953|ref|YP_002767913.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187070|dbj|BAH35174.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 212

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 58/235 (24%), Gaps = 31/235 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I L  + E     +  L    +    +                           V   
Sbjct: 3   TRIFLVDDHEIVRRGLFDLLGGVEDFVVVGEAASVGE---------------ALAAVPQS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     +           L    +      +       
Sbjct: 48  NADVAVLDVRLPDGNGVELCRELRSMLPNLRC--------LMLTSYADDEALLDAIMAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   G ++       +              D       EL+
Sbjct: 100 SGFVLKQILGTDLVAAVRTVGRGGSLLDSRATEAL--------MQRIRSDRTADPLAELS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +E      I EG T+ EI   L ++  TV NY+  ++ K   + R+ A   A  
Sbjct: 152 DQERAVFDLIGEGLTNREIGARLFLAEKTVKNYVTRLLSKLGMQRRTQAAVLATE 206


>gi|254500296|ref|ZP_05112447.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222436367|gb|EEE43046.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 246

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 64/239 (26%), Gaps = 32/239 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N        V+  +       +          A ++        T  +    E       
Sbjct: 20  NVSAPSYRFVIADDHPLFRGALRQTLEAQYPQASIVEAGALEDVTSLLEKDGE------- 72

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       LD  +     F  +  +          V+                   
Sbjct: 73  -------VDLILLDLTMPGMRGFSGLMYLRAQHTGV--PVV------VVSANEDPQAIRK 117

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + +   +  +  IR  +  +         D             +          
Sbjct: 118 AMEFGSSGFIPKSHGIEVIREAIAEVMLGNVWTPPDVD----------LSADDGSGDLVQ 167

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   LT ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A
Sbjct: 168 RLSTLTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAA 226


>gi|89096863|ref|ZP_01169754.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088243|gb|EAR67353.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 201

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 53/190 (27%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV+        +D  +      ++   +  +              +    F   
Sbjct: 36  GRQTLELVKKHQPDVLIVDIEMPLMTGLEVAEALKEAGSS--------CKVIILTTFARP 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                  A     Y         +   +  +    R+I  +                   
Sbjct: 88  GYFQRAIAAGVGGYLLKDTPSRDLAEAVRRVHAGNRMISPEL-----------------S 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
              W +   LT RE E L   + G T  +IA  L +S  TV NY++ I+ K     R  A
Sbjct: 131 LAMWEEKSPLTPRETEILESAAAGHTMAQIASQLYLSHGTVRNYMSEIIGKLGAANRIEA 190

Query: 237 IAYAVRNNIV 246
           +  A     +
Sbjct: 191 VNQAKAKGWI 200


>gi|53724874|ref|YP_104762.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           ATCC 23344]
 gi|52428297|gb|AAU48890.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 23344]
          Length = 455

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L     +   +   +                G    ++    
Sbjct: 240 LQILLVDDHAIVRQGIRQLLIDRGIAREVKEAE---------------CGGDALVIAEKS 284

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L     L   ++      +       
Sbjct: 285 EFDVILLDISLPDMNGIEVLKRLKRR--------LPSTPVLMFSMYREDQFAVRALKAGA 336

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 337 AGYLSKTVNAAQMVSAISQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 388

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 389 DREYQTLCMIASGKRLTDIAHALSLSVKTVSVYRTRLLEKMKLSNNAELTFYVMSNRLV 447


>gi|312961179|ref|ZP_07775684.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284837|gb|EFQ63413.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 217

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 58/239 (24%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   +    L         +                    G     L    
Sbjct: 5   LRLVLADDHEVTRTGFVALLAGHPQFEVVGQARD---------------GQHAVELCEQL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +         R +           L     +   +  +            
Sbjct: 50  LPDIVILDIRMPVLNGLGAARLLQQR--------LPDLKVVMFTMDDSPDHLEAAMNAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +   G  +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIQALQQVAAGGEALNTAVSARL------LRRMTERQASGAAPAEHLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++  I   LGI+  T   ++  ++ K     R+ A    +   +V
Sbjct: 156 PRERQVLGLVANGMSNRAIGEQLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214


>gi|302545604|ref|ZP_07297946.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463222|gb|EFL26315.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 231

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 11/200 (5%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  +    G      VR +      LD  +       ++R            V+    
Sbjct: 33  EDIEVVATTSGGEALETVRRERPDVVLLDIRMPDVDGLTVLR---ELRTMPDPPVVA--- 86

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
                 F      +T        +     +  ++   +  L   G ++          L 
Sbjct: 87  --MLTTFDADEYILTALHSGAAGFLLKDTEPEQLAHLVRTLAAGGVVLSPKASR---TLL 141

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                     D    +   LT RE + L  ++EG ++ +I   + +   TV +++++++ 
Sbjct: 142 HSHPGTEAVVDEKAARVRLLTARERDVLVLVAEGLSNADIGARIHLGVGTVKDHVSAMLT 201

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   A R  ++
Sbjct: 202 KLRVTSRVQAALLAQRAGLL 221


>gi|171915297|ref|ZP_02930767.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 229

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 26/221 (11%)

Query: 36  MIPLDCTVSWTMRMYALTE--YVGASHF--------LLVRWDL--FQEQKLDSIVSSDWP 83
           +  ++      + +  L      G  +          L            +D  + +   
Sbjct: 21  VAVVEDDPVMRLFLERLLGNPRHGFEYLGGWEEAETALHDLPPLTPDVVVVDLELPAMNG 80

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+  +A                +   V     +         + Y         I  G
Sbjct: 81  AELISRLAGKLIC--------AAFVVLTVHDDSAKVFAALRAGAHGYLLKGSKPGEILAG 132

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  + ++    +        +  +   V       LT RE + L  +++G   
Sbjct: 133 IRAASEGGAPLSQEISRLL------IQSFQEPPKVEKRTIPGLTPREAQILERLAQGMAP 186

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E+A  L +S  TV +Y+  + +K   ++R+ A+   + +N
Sbjct: 187 KEVAYDLSLSYETVRDYLKGVYQKLHVRSRTEAVIKYLHHN 227


>gi|170720829|ref|YP_001748517.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169758832|gb|ACA72148.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 219

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L +       +   D       +   L                
Sbjct: 4   RLLLVDDHSLIRAGVRALVSDIPGYTVVGEADDGGQLLEQAQQLA--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +  S              L   +       +       +
Sbjct: 49  PDIILLDISMRSTSGLDALTLLRASGST--------CKVLILSMHTDPDLIMRALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +          +        +           LT 
Sbjct: 101 GYLLKDATAKELEQALAALRSGERYLSPAIA---HTVINQALMRAQHGKQANIDRHNLTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  L +S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIAAGLALSIKTVETHRSQIMKRLQIYDVAGLVLFAVREKII 215


>gi|302551208|ref|ZP_07303550.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468826|gb|EFL31919.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 231

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 64/200 (32%), Gaps = 11/200 (5%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  +    G      VR +      LD  +       ++R +          V+    
Sbjct: 33  EDIEVVATASGGDAVETVRRERPDVVLLDIRMPDVDGLTVLRELRTR---PDPPVVA--- 86

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
                 F      +T        +     +  ++   +  L   G ++          L 
Sbjct: 87  --MLTTFDADEYILTALNSGAAGFLLKDTEPEQLAHLVRTLVAGGVVLSPKASR---TLL 141

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                   + D    +   LT RE + L  ++EG ++ +I   + +   TV +++++I+ 
Sbjct: 142 HSHPGTEAAVDEEAARVRLLTPRERDVLVLVAEGLSNADIGARIHLGAGTVKDHVSAILT 201

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R  A   A R  ++
Sbjct: 202 KLRVTSRVQAALLAQRAGLL 221


>gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
 gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens
           AM1]
          Length = 296

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 68/259 (26%), Gaps = 40/259 (15%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D +  +    C       ++      G   F     +          +      D
Sbjct: 38  LQDLDDAMTAVDGARCVQDLGEILHLTATKAGFESFSF--LNGATVASTSESIIMTVSKD 95

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----------------NITPPAGMDNR 129
                           L R          +  E                      G  + 
Sbjct: 96  WQDTYFSEGFLDVDPCLMRALTSNSSFMWSDIELPPVVNGKVPGARRTMEAARDHGYVDG 155

Query: 130 YCSLTFDVA----RIRIGLMLLFPKGRIILRDRLWE----IGLLAAYQANMFKSYDVHWG 181
                  V            L + +   +L +        + +LA       +       
Sbjct: 156 LVLPLHLVDTKGSPYNSFCSLFWKEDERLLPEVSRRYGHYLHMLAMLWEQKLQDLSPQLS 215

Query: 182 KDF--------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                             L+GRE + L W + GKT+ E A+ILG+S  TVN+++    +K
Sbjct: 216 TGMLGSISVLGNARSTKALSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKK 275

Query: 228 TATKTRSGAIAYAVRNNIV 246
                ++ A+A A+   ++
Sbjct: 276 LMAANKTHAVAIAINRGVI 294


>gi|332298307|ref|YP_004440229.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
 gi|332181410|gb|AEE17098.1| two component transcriptional regulator, LuxR family [Treponema
           brennaborense DSM 12168]
          Length = 230

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 22/222 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV------------GASHFLLVRWDLFQEQKLDSIVSSDW 82
           R++ +D  + +   +  + E +            G      ++        +D  +    
Sbjct: 10  RLLIVDDQILFLESLKLVIESIAQDITIVATATNGEEAVNRLKEHPVDAILMDVRMPVMD 69

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                + +  +     +  +     +    F              + Y         +  
Sbjct: 70  GVTAAKIIHET-----WPAIAI---IMLTTFDDDGYVREAMNNGASGYLLKNIAPKMLVS 121

Query: 143 GLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            +  +     ++  +    +   L +        + +      F+L+ +E   +  + +G
Sbjct: 122 AVRAVCDGSILMDPNIAGTLMQHLYSNKSNAERITGEKLPEWFFDLSPKERTIIKHMLQG 181

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           K++ EIA    I   TV NYI++I  K  T  R   +A A  
Sbjct: 182 KSNKEIAADANIGEQTVRNYISAIYAKLGTSDRRTLLAKARE 223


>gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 240

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 89/250 (35%), Gaps = 26/250 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N  D  R   V+ + +RSDL  R+I           M  L +  G + + +    L  +
Sbjct: 1   MNGADPLRMVRVNRISSRSDLFPRLI----------AMQKLADAQGFAIYRVSGSGLPAK 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------- 124
           Q+L   +  +W                  +L    +   P+      +   P        
Sbjct: 51  QRLVCEL-ENWGSSNAGFGKAFTDAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPF 109

Query: 125 --GMDNRYC-----SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
              + +        +    +  +  G +L          D + E+     +      S D
Sbjct: 110 MTRLRDGILPFSGLAFPVRLGAVGNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLD 169

Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  A
Sbjct: 170 ERRTAAAEALSEREIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQA 229

Query: 237 IAYAVRNNIV 246
           IA A+R   +
Sbjct: 230 IAKAIRLGYI 239


>gi|254463119|ref|ZP_05076535.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium HTCC2083]
 gi|206679708|gb|EDZ44195.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 201

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 20/190 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LD  +        +  +  +         +    L   +    
Sbjct: 25  GQDIIDNAVALAPDVILLDLNMPGMNGLTTIELLLEAR--------EETRILVLSMHDNP 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               T  +     Y         I+  +  +    R +       +           +  
Sbjct: 77  EYITTALSHGAMGYVLKDVPTEEIKTAIDTVMTGQRYMCTGAKGSL------VPEEGEEI 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LTGRE   L  +++G+++ E+A  L IS  TV  +  +I RK    + +G 
Sbjct: 131 RDA------LTGREQTVLLQLAKGQSNKEVAAALNISVRTVETHRKNIKRKLGISSTAGL 184

Query: 237 IAYAVRNNIV 246
             YA+ + ++
Sbjct: 185 TRYAMEHGVL 194


>gi|104779522|ref|YP_606020.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95108509|emb|CAK13203.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 217

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 77/218 (35%), Gaps = 14/218 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++  D +  +   + AL E       VG +   +    L ++ K D +V      +L  
Sbjct: 4   RILLADDSPLFRAGLRALLEQKKDFAVVGDTGDAMAAVSLAEKLKPDIVVLDMSG-ELDS 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             AL E        +            +   +       + +      VA +   L+ L 
Sbjct: 63  QQALQELFIRAPASRVLMFSARSQLEHVLNCLQL---GAHGFLLKNATVAELEQALLTLR 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G+ +    L  +   A                   LT R++E L  I+ G+T+  IA 
Sbjct: 120 SGGQFLSSAVLPMVIGQAL----RHSRKRTSAPPQAPLTKRQLEILRLIARGETTRSIAD 175

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG+S  TV  + + IM +       G + +AVR  I+
Sbjct: 176 GLGLSVKTVEAHRSQIMHRLQIHDVPGLVLFAVREGII 213


>gi|89094462|ref|ZP_01167402.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89081354|gb|EAR60586.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 221

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 76/243 (31%), Gaps = 32/243 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            ++ Q  I++  +     + +    T++      I  D   +    +   ++        
Sbjct: 1   MQLAQ-KIIIADDHPLFRAALKQAVTQAIPGVETIEADSLPAVQEAVDQHSDA------- 52

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-T 121
                      LD  +     F  +  +           +              P  +  
Sbjct: 53  -------DLVLLDIHMPGTNGFSGLVFLRGQN-----PSIPVVVVSGS----EEPNVMKR 96

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + +   +  +  I   ++ +      + ++    +G ++        +      
Sbjct: 97  ALDYGASGFIPKSAPLETIGEAIVAVLEGEEWLPQEVADNLGEVSEDDQKFAAALAA--- 153

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT ++   LT ++EG  + +IA  L +S  T+  ++ +I+RK    +R+ A+  A 
Sbjct: 154 ----LTPQQFRVLTMLTEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQ 209

Query: 242 RNN 244
           R  
Sbjct: 210 RLG 212


>gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 201

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 37/233 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +D    S ++ + T +         D                G     L +  
Sbjct: 1   MNIIIIDDDPLVISSLTTILTANKFTISACGSD----------------GEEAIQLFKKF 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +            +    L    F              
Sbjct: 45  KPDILLMDIRMEGVNGITASEKILKE--------YKDAKILLLTTFQDEEYITKALNFGC 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y     ++  +   L  +     +                 N   +      K FE L
Sbjct: 97  RGYILK-QNIESLVPALNAIAAGSIVFDS-----------QIMNKIPTKKPQKEKFFEDL 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             RE + L  I++G  + EIA  L +S  T+ NY++SI+ K A + R+  + Y
Sbjct: 145 NEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVVY 197


>gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRLKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans]
 gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans]
 gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans]
 gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans]
 gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 15/225 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   +        + E   GAS    VR        LD ++   
Sbjct: 1   MTTILVADDHAVVREGIRGLLRLDASFEIVAETDDGASTVEQVRVHRPDVLLLDLMMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +   +           +   T            +    +     +   +    R+ 
Sbjct: 61  GHAGVPAVIRAIRAASGDTHIMVLTSSDDDALALAAIDAGADS-----FLLKSMRGERLL 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +         +       +                       LT RE+E L  ++EG 
Sbjct: 116 QAIHAAVHGEPTLHPGIAQRMI---------GALRKPPRNPFAALTARELEVLRCLAEGG 166

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  IA  LGI+  TV  ++ ++M K     R+ A+A A R  ++
Sbjct: 167 SNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGLM 211


>gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISHKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|261409922|ref|YP_003246163.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286385|gb|ACX68356.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 217

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 25/233 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  ++      +  +    D    +  ++                G         
Sbjct: 2   KIKVIIADDNSFIREGMKIILATFDEFDVVATVED---------------GQEAVAYCEA 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +    +  + +    K K          L    F             
Sbjct: 47  HEVDVALMDVRMPNLNGVEATKQLTERTKTKT---------LILTTFDDDEYITDAILNG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y     D  RIR  +  ++    ++    L +I    +            + +    
Sbjct: 98  AKGYLLKNNDPERIRDAIKTVYHGHHVLQDVVLDKIKSGLSPGNPDKTDKADKFDRSL-F 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE++ +  I++G  + EI+  L IS  T+ N+I S++ KT  + R+    +
Sbjct: 157 TERELDIMALIAKGLANKEISKKLFISEGTIANHITSVLSKTGLEHRTQIAIF 209


>gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   + ++  GL  +      + R     +  L  Y      +  +    + ELT 
Sbjct: 98  GIFGPGDSMDKVCQGLKAIIKGDNWLSR---RLLDQLVNYYRGREVNSIIEPAIEVELTR 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           REV+ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 155 REVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 209


>gi|323524483|ref|YP_004226636.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323381485|gb|ADX53576.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 218

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 69/223 (30%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +        +TE   GA     V    +    LD  +     
Sbjct: 4   RILLADDHAVVRQGVRQLLLDRGVAREVTEAQSGAEALEAVAAHSYDVVLLDISLPDMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++++ +           L          +      +         Y S T D A++   
Sbjct: 64  VEVLKRIKRK-----APRLAVLMFSM---YREDQYAVRALKAGAAGYLSKTVDAAQMIGA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + +       +          + S+D       +L+ RE + L  ++ GK  
Sbjct: 116 IQQVAAGRKYVSPAMAEALA--------DYVSFDGEQLPHEKLSDREYQTLCMLASGKRL 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y   ++ K   +  +    Y + N +V
Sbjct: 168 TDIAEALSLSVKTVSVYRTRLLEKMKLRNNAELTFYVMSNRLV 210


>gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281576|gb|ABR89986.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 248

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 66/229 (28%), Gaps = 23/229 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSI 77
            +S ++ +    D       L   ++    M  + +   GA    L++        LD  
Sbjct: 42  VSSAMTKIVIAEDHTLIREGLRSLMAHVAGMEIVADTGSGAQVEELLQQTPTDLLLLDLD 101

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L   +  S              L               A   + Y     D 
Sbjct: 102 LPGCHGITLTARIKQSH--------PHIKILILTGSTDHNSVRQAFAAGADGYLLKLEDS 153

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + +   +  +    R +         LL                     T RE + L  +
Sbjct: 154 SELLEAIPTVLDNRRYVS-------KLLGPLTHFQDSEDQAV-------TPREQQILKLV 199

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK+S EIA  L +S  TV  +  ++M K +         YA+   ++
Sbjct: 200 AAGKSSQEIADTLELSVFTVRKHKQNLMAKLSLHNAVELTRYAMHQGLL 248


>gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 219

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 13/228 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             +  +    D       L   ++       ++E   G   +  V         +D  + 
Sbjct: 1   MLMLKVLIADDHAVVRQGLAYLINGQPDFKVVSEAANGTDAYARVEQGNIDILVMDLSM- 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
              P      +      +++  ++                          Y   +   + 
Sbjct: 60  ---PPGESGLVTTQRIHEHFPDVKILILSM---HEEQEYINKAIHNGALSYILKSSPDSE 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWIS 198
           +  GL  L    R I +     I L  +    +         + +  L+ RE E    ++
Sbjct: 114 LISGLNALSANRRYIDQ----NITLSKSDIKQIEAGGVDAHLQGYRSLSKREREVFPLMA 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G T+ EIA  L IS  TV  + ASIM K +  +R   + YAV ++++
Sbjct: 170 LGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHHHLI 217


>gi|196232781|ref|ZP_03131632.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223241|gb|EDY17760.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 215

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 19/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   + LA++   +  +          + +       +R +      +D  +
Sbjct: 5   RVMIVDDHPLVRERLAQIFNHEPDMEVCGEAEDAKQAMET-----IRLEAPDLVIVDITL 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            +    DL++ + L          +    L   +               N Y +     A
Sbjct: 60  KNSSGLDLIKSIRLHS--------ETLPVLVLSMHEESLYAERVLRAGANGYITKHQQPA 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      +         + + +  ++             LT RE+E L  I 
Sbjct: 112 EVLTAVRRVLSGDVYVSD------KMASEFLRSISTGVKSAPRSVDRLTDRELEVLELIG 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            G+T+ EIA  L +   T++ Y A I  K      S  + +A+R
Sbjct: 166 RGRTTREIATKLELGIATIDTYRARIKEKMDFNNASELLHFAIR 209


>gi|170781574|ref|YP_001709906.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156142|emb|CAQ01282.1| putative two-component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 220

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  + E     V         L  +            +  +               
Sbjct: 2   IRIVLVDDQELFRGGVRVALDAQPDLEVVGEAGDGQEGLGVIDEV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + VR +                 +    F     + T   G  
Sbjct: 47  RPDVVLLDMRMPVMDGLETVRALF-DGTRDAPP-----RVIVLTTFALDRASATAIRGGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   +  +     ++  D L ++    A  A    +          L+
Sbjct: 101 SGFLLKDATPAFLAAAIRAVHAGSAVLAPDELTQLFTSDATAAPAPPAPPAFRS----LS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE +    ++ G ++ E+A +  +S +TV  +++SI+ K A + R   + YA  + +V
Sbjct: 157 VREKDVFGHVARGLSNAEVAALEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRLV 215


>gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
 gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 225

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 81/244 (33%), Gaps = 28/244 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  E     + V+   + ++    ++  D       ++                
Sbjct: 5   SKIRVMVIDEQPFFRAGVAQALSDNNF--EILATDTHKDPLEQVET-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +     L S +++    DL R +  +         +       P    L E I   A 
Sbjct: 49  -KMPDVVLLGSDLTAYSGLDLGRRIVRTF-----PNTKVIILSPNPNDTELFECIRTAAV 102

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGK 182
                   +     +   +         I    +        + A   ++          
Sbjct: 103 AC---LKKSSTAEELIETIRRANRGEYPINESLMGSPSLAKQVLAQFQDVSMLGKDASSF 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + LT I+ G T+ +IA  L IS  T+ N++++I+RK     R+ A+  A+R
Sbjct: 160 VAPLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKLNANDRAHAVVVAIR 219

Query: 243 NNIV 246
             ++
Sbjct: 220 CGLI 223


>gi|315125633|ref|YP_004067636.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas sp. SM9913]
 gi|315014146|gb|ADT67484.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas sp. SM9913]
          Length = 204

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 61/239 (25%), Gaps = 36/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       V+ L +    +  +            + AL+E +           
Sbjct: 2   IKVYLVEDQALVRDAVAALLSLDFNIEVIGQASNGQDALNEINALSEDL----------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + S    +L   +A                +               +   
Sbjct: 51  HPDIVLTDIEMPSMNGIELSEQIAAKHPAIN-------MVIMTTFS-RAGYIRRSLSAGV 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   L  +    ++I  +                            LT
Sbjct: 103 KGFILKEAPSEELINALKKVMQGQKVIDPELA-----------------INALDDTDPLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E + L   S+G  + EIA  L IS  T  NY++  + K     R  A   A +   +
Sbjct: 146 DKERKALKLASDGLKTSEIAKQLYISEGTTRNYLSDAIAKLNATNRIDAARIARQKGWL 204


>gi|239942603|ref|ZP_04694540.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989062|ref|ZP_04709726.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446065|ref|ZP_06585455.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349012|gb|EFE75916.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 219

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 67/242 (27%), Gaps = 32/242 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L      +  +           R+ A            
Sbjct: 3   EDGKITVFLLDDHEVVRRGVHELLASEPDIEVVGEAGTAADALARIPAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   +++           L    +          
Sbjct: 52  ----RPDVAVLDVRLPDGSGVEVCREVRSQDENIKC--------LMLTSYADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WG 181
               + Y         +   +  +     ++                   +         
Sbjct: 100 MAGASGYVLKAIRGNELLNAVRDVAAGKSLLDPVATAR-------VLERLRDGGTAKGDD 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT +E + L  I EG T+  I   L ++  T+ NY++S++ K   + RS A AY  
Sbjct: 153 RLANLTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVA 212

Query: 242 RN 243
           R 
Sbjct: 213 RL 214


>gi|302522019|ref|ZP_07274361.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302430914|gb|EFL02730.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 150

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 6/144 (4%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            R   L    + +  + +         Y         +   +        ++       +
Sbjct: 6   ARARVLVLITYDSDTDTLPAIEAGATGYLLKDAPREELFAAVRATADGRSVLAPAVASRL 65

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                   ++             L+ RE E L  ++ G ++ EIA  L +S  TV  ++ 
Sbjct: 66  ------VTSLRAPGADETPPRTPLSAREREVLALVARGTSNREIARALFLSEATVKTHLT 119

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            +  K     R+ A+A      I+
Sbjct: 120 HLYAKLGVTDRAAAVATGYERGIL 143


>gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 219

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 14/227 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              +    +  + LA M+  +  ++   +  +L E       L           +D  + 
Sbjct: 4   VMLIDDHASTREPLAFMLEQEPDLTVVAQAGSLAEA---RQVLDAPDLCVDVAVVDLGLP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L+  +  S  D +  VL          F          A         +  V  
Sbjct: 61  DGSGEELIPELRESRPDAHSLVL--------TYFSDHERLARAVASGAAGILHKSVPVGD 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  L    +++    + E       +    +     +     LT RE E L  +++
Sbjct: 113 VVDAVRRLNAGEQLLTVAEVVEALRFVDQERRREREARQAFEP---LTDREREVLQALAD 169

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +  EIA  L IS  TV  +I +I+ K    +R  A+  A R+N+V
Sbjct: 170 GLSDKEIAERLYISPATVRTHITAILGKLDANSRLQAVVVAARHNLV 216


>gi|229010418|ref|ZP_04167622.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
 gi|229165953|ref|ZP_04293718.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228617506|gb|EEK74566.1| Sensory transduction protein ydfI [Bacillus cereus AH621]
 gi|228750838|gb|EEM00660.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048]
          Length = 161

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      + +  +   +             +    ++     +         Y   
Sbjct: 1   MDLNMPKMSGLETIEALNEKQN--------HTPIIILTTYNEDELMLKGIELGAKGYLLK 52

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREV 191
             D   +   L        ++  + + +I          +K  +VH  K  E  LT +E+
Sbjct: 53  DTDRENLFRTLEAAIRGEILLQPNIMEKIV--------KYKRKEVHADKVAENNLTVKEL 104

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L  I+ G  + EIA  +GI+  TV  Y+ +I  K    +RS A+A ++   ++
Sbjct: 105 FVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 159


>gi|256379005|ref|YP_003102665.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923308|gb|ACU38819.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 16/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     L  ++     V             GA     V         +D  
Sbjct: 2   IRVVVVDDEPMVCAHLRVILGGADDVEVVAEAQ-----DGAEAVEAVVRHRPDLVLMDLR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +A         V+          F T    +         +   T   
Sbjct: 57  MPGVDGLAATGRIAA--LPDPPPVV------VLTTFDTDGHVLAALRAGAAGFLLKTTAP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + +      ++       +   ++          V       L+ R++E LT +
Sbjct: 109 HDLVELVRVAAAGHTVLSPAATARLVAASSAGRRRDADARVRLRA---LSERDLEVLTRL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ +IA  L +S  TV +Y++ ++ K   + R+ A   A    +V
Sbjct: 166 GRGLSNADIARELFLSEATVKSYVSRMLVKIDCRNRTQAGVLAHEAGLV 214


>gi|21219875|ref|NP_625654.1| two component system DNA binding response regulator [Streptomyces
           coelicolor A3(2)]
 gi|256789028|ref|ZP_05527459.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
 gi|289772921|ref|ZP_06532299.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
 gi|13122115|emb|CAC32294.1| putative two component system DNA binding response regulator
           [Streptomyces coelicolor A3(2)]
 gi|289703120|gb|EFD70549.1| two component system DNA binding response regulator [Streptomyces
           lividans TK24]
          Length = 211

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 19/228 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            T     L    D       L   +     M  +      +              +D ++
Sbjct: 1   MTDSPVRLLLADDHPVVRAGLRAVLETEPGMVVVA----EAATAEEAVTRAARGDVDVVL 56

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +     +          R        + +  + +         Y        
Sbjct: 57  MDLQFGKGMNGAEATAAIAARPGAPRVL--IVTTYDSDADTLPAIEAGATGYLLKDAPPE 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +         +           A    +  ++          LT RE E L  ++
Sbjct: 115 DLADAVRTAAAGRTALAPAV-------ADRLMHRLRTPG------TTLTRRETEVLALVA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++  I   L ++  TV +++A +  K    +R+ A+A A    ++
Sbjct: 162 DGLSNQAIGRRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAGSLGLI 209


>gi|91975316|ref|YP_567975.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681772|gb|ABE38074.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSI 77
           T   +HL    D       L   VS  +    + E         +L R        LD  
Sbjct: 3   TPVSTHLIIADDHPLFRDALRLAVSSVVPGAKVGEAGSFEDLTAMLERDGDVDLVLLDLK 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F  +     ++      V+   ++    +  +L           + +    F V
Sbjct: 63  MPGISGFSGL-IYLRAQYPAIPVVVVSASDDVETIRRSLDF-------GASGFVPKRFGV 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   ++ +      +  D            A           +   LT ++V  L  +
Sbjct: 115 EKLGEAILQVLDGDVWVPPDV--------DLSAAADPETSKLRDRLVTLTPQQVRVLMML 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 167 SEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 240

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 78/244 (31%), Gaps = 23/244 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++           
Sbjct: 4   AMTESATRDLLIQQMVSTITELDGQAAIENALEWLRRECNSERAMFFQFKGPVLLTF--- 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITP 122
           ++S+            +      V++                        +  L +    
Sbjct: 61  ITSNVDDAWGDAYRQHDLITQDPVIR-CYRNQLGFLNWQDAFRQYPVTAVYDALVDTCEL 119

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              +   Y +     A     +  L    R I  ++ + +  L     ++ +        
Sbjct: 120 LPAISYGYTN-HCRGADSVTSVCTLGEVERSISAEQKYLMSSLMPVLHSVARGLKFC--- 175

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+ 
Sbjct: 176 SRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALC 235

Query: 243 NNIV 246
             ++
Sbjct: 236 RGLI 239


>gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 233

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 20/202 (9%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
           T    A+          ++          D ++        +  +  S  D     L   
Sbjct: 48  TSGFNAIGAANATEALRVLDTTTPDIIICDILMPGTNGLQFLEQIRSSRTD-----LAGT 102

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             LF          +T      + Y +   D   + + +                 + L+
Sbjct: 103 PFLFLTALADRSHELTGREAGADDYLTKPIDFDVLILTIR--------------ARLNLV 148

Query: 166 AA-YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           A     +   +     G+   L+ RE E L  I  G+ + EIA  LG+S +TV++Y+ +I
Sbjct: 149 ARVKAISNQPAAAEPNGEFIHLSRRETEVLKEIGTGQRNGEIARKLGLSEHTVSDYVKAI 208

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K +  +R+ A   A+R  +V
Sbjct: 209 YQKLSVSSRAEATREAIRRGLV 230


>gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
 gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419]
          Length = 246

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 23/230 (10%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                   +   M         +H L +  +   +      +   +        A+    
Sbjct: 17  GGCADPERFFALMRR---TFNIAHLLYLEAESLPDGLRICRLHHTFGAYAAEVYAVRGLH 73

Query: 97  KYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +L+       PV                                    A     L 
Sbjct: 74  RIDPILKLALGGVRPVEWATARRRFPECEPLFVAAEEIGLSTEGVALPLPSPAGRMALLA 133

Query: 146 LLFP----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTW 196
           +       +     R  L +  L A         +    G     +D  LTGRE E LTW
Sbjct: 134 ISANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGAMEDERDLRLTGRETEVLTW 193

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + GK+  EIA ILGIS  TV  ++ +  RK    + + A+A+AVR+ ++
Sbjct: 194 SAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 243


>gi|72162244|ref|YP_289901.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915976|gb|AAZ55878.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 215

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +++   S +  +   +  L  +                    GA    L R  
Sbjct: 2   ISVLVVDDEQLVRSGLRMILESAPDLEVVGEAAD---------------GAEAVALARKL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +A                +    F              
Sbjct: 47  QPDVVLLDIRMPGMDGLTAAAHLAELPNAP--------KVVLLTTFDLDEYVHRGLRAKA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  ++    ++         +L  + A    S      +   L+
Sbjct: 99  VGFLLKDTPPRDLITAVRTVYEGNAMLAPSVTKR--MLERFAAPSGNSAAEAARRLEVLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  ++ G ++ EIA  LG+   TV  +++ I+ K     R      A    +V
Sbjct: 157 ERERAVLVGVARGLSNAEIAAELGMREATVKAHVSRILTKLEKNNRVQIAILAHDAGLV 215


>gi|124265774|ref|YP_001019778.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124258549|gb|ABM93543.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +       +    + +  +  +            +                  
Sbjct: 3   VRVILCDDHALIRRGIRDTLSDAPDIEVVGEAGDYGELRSLLR---------------DT 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +         + L+       P        I       
Sbjct: 48  DCDVLVLDINLPGRSGLDVLHVLKEEG-----SALRVLVVSMYP---EDQYAIRALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   I   + ++    + I  +    +    +  A               L+
Sbjct: 100 YGYVNKGSDTQLIVEAVRMVAKGRKYITPEIAQMLAESLSQPATEIAHEK--------LS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K A    S    YA+RN +V
Sbjct: 152 DRELQTLVLIASGKRLSDIAAELTLSPKTVSVYRARVLEKLALTNNSELTVYAIRNGLV 210


>gi|289771965|ref|ZP_06531343.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289702164|gb|EFD69593.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 62/233 (26%), Gaps = 29/233 (12%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R    R             LA ++ ++  +    ++ A     G                
Sbjct: 7   RAHPVRVLLAEDQGMMRGALALLLGMEDDIEVVAQVSA-----GDEIVAAALTHRPDIAL 61

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      D    +                 L    F                +   
Sbjct: 62  LDIELPGLSGLDAAAELRERA--------PGCRVLILTTFGRPGYLRRAMEAGAAGFLVK 113

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              V  +   +  +     ++                               LT RE + 
Sbjct: 114 DGPVEELAGAIRRVLGGETVVDPALAAAALSAG----------------PSPLTARECDV 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L   ++G T  +IA  L +S +TV NY+++ + KT T+ R+ A+  A     +
Sbjct: 158 LRASADGATVADIAGALHLSESTVRNYLSAAIGKTGTRNRAEALRAARGQGWL 210


>gi|256824492|ref|YP_003148452.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687885|gb|ACV05687.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 228

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 24/243 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E     +++  +D    + ++ +   +  L  +  +         + A            
Sbjct: 7   EGPPTKVLVVDDDRLLCAGLTSILHTTPDLVVVAAVHDGAQVQGAVDA------------ 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      +  R +A            RP  +    F      +   
Sbjct: 55  ---HRPDVVLLDIRMPVLDGIEATRQLAARAS--------RPAIVVMTTFEGDDTVVRAL 103

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +     D  +I   +         +       +  L     +            
Sbjct: 104 GAGADGFLLKAEDPRQIIDAVRSAAAGHSPLSPTSARSLVRLVG-PGSRADLASRARELA 162

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE +    + EG T+ +IA  L +S  TV   +A + RK   + R+    +A R 
Sbjct: 163 AGLTERERQVAALVGEGLTTPQIAARLFVSEATVKTQLAEVQRKWGCENRTQVAVWADRA 222

Query: 244 NIV 246
            ++
Sbjct: 223 GLI 225


>gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 162

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ +   E  +     + PT L    F+               +         +   +  
Sbjct: 5   MKRVDGIEATRRLARHEAPTVLALTTFNEDKLLSGALRAGVAGFVLKDSSAEELIRAVRA 64

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      +       +        +M ++         +LT RE++ L  I  G ++ EI
Sbjct: 65  VARGDSYLDPAVTARVLNTYRRAPDMPRAL-----TSVDLTTRELDVLRLIGRGYSNAEI 119

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV ++I  I  K   + R+ AI Y+  + IV
Sbjct: 120 ATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIV 159


>gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 65/221 (29%), Gaps = 12/221 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   +            +G +   L      +    D  +      +
Sbjct: 15  ILLVEDDAPTCWRLQDALVKAGYKVRSAGTLGEARSAL-GEAAPRVLLTDLRLPDGHGVE 73

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L+R +            +                I+        Y         I   + 
Sbjct: 74  LIREVRQRF-----PDTEIMVISALG---DEESVISAITVGATGYLLKDAFPTDIATTVR 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L      I          +     N  +           LT RE++ L  I++G +  E
Sbjct: 126 DLVAGHSPISASIAR---FIVRRTQNSAEPPPGPALNTARLTPREIDILWGIAKGFSYAE 182

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+SR TV  +I +I RK    TRS A+  AV+  ++
Sbjct: 183 IASHLGLSRQTVPGHIKNIYRKLEVHTRSEAVFEAVQQGLI 223


>gi|241204229|ref|YP_002975325.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858119|gb|ACS55786.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 207

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 58/222 (26%), Gaps = 23/222 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   + + R          +  +            ++   +      LD  +   
Sbjct: 8   VVDDHPLFREGVTR-----SLSEISGFVVVGEGASSDDAAMIASDNHPDIMLLDVSMPGG 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +   +A           +        V   +   +         Y         + 
Sbjct: 63  GLSAVSDVLA------RSPTTKVLM---LTVSEEVDTLLGALQRGAMGYVLKGVGSRGLA 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R I      ++         M  S +        LT RE E +  +++G 
Sbjct: 114 EAIQTVLRGSRYISPTMSAKV---------MENSLNGGTSDKNSLTPREREVMDLVAQGL 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++  I + L +   TV +++  I+ K     R+ A       
Sbjct: 165 SNKHIGLRLSLQEKTVKHHMTQILSKLGASNRTEAALQWRER 206


>gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----- 186
            L       +  + L     R    D +  + LL  +      S      +         
Sbjct: 102 LLLAGQHGEKKAIFLTSFGNRHPSSDEIDTLYLLTPHLYLASDSIAQQSQQLHLPPPLNP 161

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+    
Sbjct: 162 LTDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 224

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----- 186
            L       +  + L     R    D +  + LL  +      S      +         
Sbjct: 102 LLLAGQHGEKKAIFLTSFGNRHPSSDEIDTLYLLTPHLYLASDSIAQQSQQLHLPPPLNP 161

Query: 187 -TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            T RE E L W+  GK++ EI+ +L IS  TV  ++ +I RK  T  R+ AIA A+    
Sbjct: 162 LTDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221


>gi|170022343|ref|YP_001718848.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169748877|gb|ACA66395.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis YPIII]
          Length = 196

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 42/231 (18%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V   + +   S  + L +  + +  +            +  L                
Sbjct: 4   RVVFIDDHDIVRSGFAQLLSLEEDIQVVGEFSSAKQARAGLPGL---------------Q 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +  +   DL++ +                 +   +  +     T       
Sbjct: 49  ANICICDISMPDENGLDLLKGLPS-----------GMGVIMLSMHDSPALVETALERGAR 97

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S       +   +  +   G  ++ +   ++  +A                   LT 
Sbjct: 98  GFLSKRCKPEDLISAVRTVGSGGVYLMPEIAQQLARVAV----------------DPLTR 141

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE E    ++EG    EIA  LG+S  TV+ + A++  K            
Sbjct: 142 REREVAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 192


>gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
 gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188]
          Length = 260

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 69/235 (29%), Gaps = 26/235 (11%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALS 93
                      +  + + +G  H +        +       D  V    P       +  
Sbjct: 17  GTAFQSDTLALLTRIRDEIGCRHIMHTYRGRMGDCTKTTSSDLTVVMTVPTSWTARYSTK 76

Query: 94  EKDKYYNVLQ----RPTELFCPVFHTLPENITPPAGMDNRYCSLT-FDVARIRIGLMLLF 148
                  + Q            +   L E+      +           +  I + +    
Sbjct: 77  NYFVIDPIFQEDAPYFQNDASGIVRDLQEDANECPSIAELLQDAEKHGLGNIFVAVSARS 136

Query: 149 PKGRI--------ILRDRLWE---------IGLLAAYQANMFKSYDVHWGKDFELTGREV 191
            KG +        +  D   E         +  L+    +              LT REV
Sbjct: 137 QKGAVGCTLFMFEMSPDEDREQFVAKLRPRLLSLSGIIHSALCGCKDVATVASLLTPREV 196

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +CL W + GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 197 DCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 251


>gi|56413638|ref|YP_150713.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62179982|ref|YP_216399.1| secretion system transcriptonal activator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168233585|ref|ZP_02658643.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|168822260|ref|ZP_02834260.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194469524|ref|ZP_03075508.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|197248947|ref|YP_002146649.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|197362562|ref|YP_002142199.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|224584098|ref|YP_002637896.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|56127895|gb|AAV77401.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127615|gb|AAX65318.1| Secretion system regulator: transcriptonal activator, homologous
           with degU/uvrY/bvgA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194455888|gb|EDX44727.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|197094039|emb|CAR59535.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197212650|gb|ACH50047.1| EsrB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|205332349|gb|EDZ19113.1| EsrB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|205341360|gb|EDZ28124.1| EsrB [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|224468625|gb|ACN46455.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|320086128|emb|CBY95902.1| Oxygen regulatory protein nreC Nitrogen regulation protein C
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|322714449|gb|EFZ06020.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 212

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 55/190 (28%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +            LD  +      D++      +  + +  +          +   
Sbjct: 38  GLEVYNACCAYEPDILILDLSLPGINGLDII-----PQLHQRWPAMNIL---VYTAYQQE 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   N Y   +     +   L  +    R I      E  L            
Sbjct: 90  YMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAIL---------AEL 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + L  I EG T+  I+  L IS  TV  +  ++MRK      +  
Sbjct: 141 KADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 200

Query: 237 IAYAVRNNIV 246
           +  A R  ++
Sbjct: 201 LNCARRMRLI 210


>gi|290476079|ref|YP_003468977.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Xenorhabdus bovienii SS-2004]
 gi|289175410|emb|CBJ82213.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Xenorhabdus bovienii SS-2004]
          Length = 209

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 58/222 (26%), Gaps = 31/222 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSI 77
            + V          A+++ L+  +       +  E                     LD  
Sbjct: 4   VALVDDHVVVRSGFAQLMSLESDIEIVGEFSSCAEAR-------HGLPGSGATVCILDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +                 +   V  ++             Y S     
Sbjct: 57  MPDESGLSLLQDL---------PSGIHC--IMLSVHDSVTMVENALKAGARGYLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +      G  +  D            A    S          LT RE +    +
Sbjct: 106 DELLQAVRTTANNGCYLTPD-----------IALKLASSKNSQTSLDHLTKRERQVGEML 154

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + G     +A  LG+S  TV+ + A++M K       G + Y
Sbjct: 155 ARGMDVKVVAAELGLSHKTVHVHRANVMSKLGVTNNVGLVNY 196


>gi|21225971|ref|NP_631750.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|12311704|emb|CAC22720.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 226

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 69/241 (28%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + V  +   +  +  +                    G     LVR  
Sbjct: 2   IRVLIADDEPMIRAGVRAVLATAADIDVVAEAAD---------------GHDAVELVRRH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D    +           +     +    F      +    G  
Sbjct: 47  RPAVAVLDIRMPGLNGIDAAAEIRT--------AVPGTGVIMLTTFGEDDYILQALGGGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             +   + +   +  G+  +      +       +   L A     +         +   
Sbjct: 99  AGFLIKSGEPEELLTGVRAVAGGAAYLSPRVAARVVAHLAATGAGTLAGRRSAARDRVAA 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +  G ++ +IA  L +   TV  +++S++ +     R+ A   A    I
Sbjct: 159 LTAREREVLALLGAGLSNGQIARRLHVVEGTVKAHVSSLLARLGVDNRAAAAVVAHEAGI 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|239933481|ref|ZP_04690434.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291441852|ref|ZP_06581242.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|291344747|gb|EFE71703.1| two component system DNA binding response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 211

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 19/228 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            T     L    D       L   +     +  + E   A   ++       E  +D ++
Sbjct: 1   MTDTPIRLLLADDHPVVRAGLRAVLETEPGLVVVAEAATAEDAVV----RAAEGDIDVVL 56

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +     + +       + P  L    + +  + +         Y        
Sbjct: 57  MDLQFGRGMGGAEATARITALP--EAPRVLIVTTYDSDADTLPAIEAGATGYLLKDAPPE 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +         +          +A    N  ++       D  LT RE E L  ++
Sbjct: 115 DLAAAVRTAAAGRTTLAP-------TVADRLMNRLRT------PDTALTRRETEVLALVA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++  +   L ++  TV +++A I  K    +R+ A+A A    ++
Sbjct: 162 DGLSNQAVGNRLHLTEGTVKSHLARIYAKLNVDSRTAAVATATDLGLI 209


>gi|126739386|ref|ZP_01755079.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126719486|gb|EBA16195.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 203

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 61/236 (25%), Gaps = 36/236 (15%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  + +     +S              +   +     + ++ +       LL      
Sbjct: 3   ILLADDHDMVRETISAYLESEGG----AEVALAIDLAGALQSIRQDGPFDLVLL------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D  +        +     +         +                          
Sbjct: 53  -----DFQMPGMNGLTGLIQAISAN--------KGGRVAILSGSAPAKTAREALEAGAIG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   T     +   +  +      +  + + E                       +L+ R
Sbjct: 100 FIPKTMGAQSLLNAVRFMSSGEVYMPVELMRE-------------EEATDHPLAEKLSPR 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  + +G ++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 147 ELEVLESLCKGLSNKEIARELDLQEVTIKLHVRTLCRKLDAKNRTQAALTAKEAGL 202


>gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces
           oris K20]
          Length = 203

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 64/231 (27%), Gaps = 29/231 (12%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R             LA ++ L+  +    ++       G      VR        +D
Sbjct: 2   SPIRVLIADDQALVRGALATLLGLESDLEVVAQVGR-----GDEVLDAVREHTVDVALVD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +  S+      ++          F                +     
Sbjct: 57  IDMPGRDGLAATAEVVDSDLPCRCLIV--------TTFGRPGYLSRGMEAGAAGFIVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +    R+I  +   E  LL                    LT RE E L 
Sbjct: 109 PPEALAEAIRKVHAGLRVIDPELAQESVLLG----------------PNPLTEREKEVLL 152

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N  +
Sbjct: 153 AAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203


>gi|171910304|ref|ZP_02925774.1| response regulator receiver domain protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 220

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 65/224 (29%), Gaps = 18/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P     LA++I  +  +       +  E +      LV          D  +
Sbjct: 7   RVLLVDDHPIMRHGLAQLIRAEADLEVCGEGGSAAEGL-----ALVGSLKPDLVVADLTL 61

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 + ++ +          +      L   +                 Y        
Sbjct: 62  PDKHGLEFIKDVQS--------MYPGTLILVLSMHDESLYAERVLRAGARGYVMKETAAD 113

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            + +    +   G  +         +L     +          +   LT RE+E L  I 
Sbjct: 114 MLVLAARRVLDGGIYLS--EKMSSLMLEMMAGHRKPVSSSALDR---LTDRELEVLQLIG 168

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +G+ +  IA  L +S  TV+ + A+I  K      +  + YAVR
Sbjct: 169 QGRATRHIAEQLHVSVRTVDAHRANIKEKLQLADGATLVRYAVR 212


>gi|16760520|ref|NP_456137.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764741|ref|NP_460356.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141720|ref|NP_805062.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161614193|ref|YP_001588158.1| hypothetical protein SPAB_01935 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167995024|ref|ZP_02576114.1| EsrB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168239275|ref|ZP_02664333.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|168240903|ref|ZP_02665835.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|168263778|ref|ZP_02685751.1| EsrB [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463199|ref|ZP_02697130.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|194448851|ref|YP_002045396.1| two-component response regulator EsrB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737568|ref|YP_002114406.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197261742|ref|ZP_03161816.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|198243723|ref|YP_002215738.1| hypothetical protein SeD_A1950 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390296|ref|ZP_03216907.1| EsrB [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204927430|ref|ZP_03218631.1| EsrB [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352893|ref|YP_002226694.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857103|ref|YP_002243754.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051567|ref|ZP_03344445.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428553|ref|ZP_03361303.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213610045|ref|ZP_03369871.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647230|ref|ZP_03377283.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854965|ref|ZP_03383205.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913204|ref|ZP_04657041.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289804327|ref|ZP_06534956.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289826048|ref|ZP_06545196.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25298758|pir||AE0700 probable two-component response regulator ssrB [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16419912|gb|AAL20315.1| secretion system regulator: transcriptonal activator [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16502816|emb|CAD01974.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137348|gb|AAO68911.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|161363557|gb|ABX67325.1| hypothetical protein SPAB_01935 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407155|gb|ACF67374.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|194713070|gb|ACF92291.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|195634250|gb|EDX52602.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197239997|gb|EDY22617.1| EsrB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|197287974|gb|EDY27361.1| EsrB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|197938239|gb|ACH75572.1| EsrB [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199602741|gb|EDZ01287.1| EsrB [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|204322772|gb|EDZ07968.1| EsrB [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205272674|emb|CAR37584.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205327217|gb|EDZ13981.1| EsrB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205339126|gb|EDZ25890.1| EsrB [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|205347546|gb|EDZ34177.1| EsrB [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206708906|emb|CAR33236.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261246597|emb|CBG24407.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993279|gb|ACY88164.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157926|emb|CBW17421.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|309243421|gb|ADO51997.1| SsrB [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|312912376|dbj|BAJ36350.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224017|gb|EFX49080.1| Secretion system regulator of DegU/UvrY/BvgA type [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615123|gb|EFY12046.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619966|gb|EFY16839.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622277|gb|EFY19122.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627800|gb|EFY24590.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632856|gb|EFY29600.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636653|gb|EFY33356.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641154|gb|EFY37796.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644910|gb|EFY41443.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650252|gb|EFY46666.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655826|gb|EFY52128.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660152|gb|EFY56391.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665282|gb|EFY61470.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669539|gb|EFY65687.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673465|gb|EFY69567.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677393|gb|EFY73457.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679944|gb|EFY75983.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687416|gb|EFY83388.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323129663|gb|ADX17093.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192369|gb|EFZ77600.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198612|gb|EFZ83713.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202301|gb|EFZ87347.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208658|gb|EFZ93596.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213827|gb|EFZ98605.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217635|gb|EGA02350.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323218983|gb|EGA03493.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323223662|gb|EGA07972.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229437|gb|EGA13560.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232660|gb|EGA16756.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240302|gb|EGA24346.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242710|gb|EGA26731.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323245921|gb|EGA29909.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252485|gb|EGA36332.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255186|gb|EGA38965.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260067|gb|EGA43692.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267169|gb|EGA50654.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271508|gb|EGA54929.1| two component system sensor kinase SsrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623486|gb|EGE29831.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627965|gb|EGE34308.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332988278|gb|AEF07261.1| transcriptional activator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 212

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +            LD  +      D++      +  + +  +          +   
Sbjct: 38  GLEVYNACCAYEPDILILDLSLPGINGLDII-----PQLHQRWPAMNIL---VYTAYQQE 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   N Y   +     +   L  +    R I      E  L            
Sbjct: 90  YMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAIL---------AEL 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE + L  I EG T+  I+  L IS  TV  +  ++MRK      +  
Sbjct: 141 NADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 200

Query: 237 IAYAVRNNIV 246
           +  A R  ++
Sbjct: 201 LNCARRMRLI 210


>gi|298291253|ref|YP_003693192.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296927764|gb|ADH88573.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 58/239 (24%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +          L  R    + +       +                       
Sbjct: 4   IRILLVDDHPVVREGYRRLLGRQPGFSVVAEAGDGEAARAAFAE---------------H 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +     F     +   +         +   +   +           A   
Sbjct: 49  RPDIVLMDLSMPGGGGFPAAEAILAGD--------AQARIIVVSMHQGAIFAQKAMAAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S +     +   +  +    R++  D   E                        LT
Sbjct: 101 RGFVSKSSPPDELIRAIKTVMSGRRVLSDDMAQEFA------------RTSLDDDVAGLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G     IA  LG+S  TV N ++ I  K      +  +  A R  +V
Sbjct: 149 PRERDILLLLVRGMNGRAIAQDLGLSSKTVQNNLSQIRAKLGASGDADLVLKAQRAGLV 207


>gi|271968448|ref|YP_003342644.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511623|gb|ACZ89901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 56/216 (25%), Gaps = 11/216 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     M  + E   G            Q   +D  +     
Sbjct: 3   RVLIVDDEALVRSGLRMILEAAGDMAVVGEARDGDEAIAAAVRLRPQVVLMDVRMPGTDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +              P  +    F                +         +   
Sbjct: 63  LTAAARI--------SAASDGPGVIMLTTFDLDEYVHEALRLGAVGFLLKDTPPRELAAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     I+    +  +  + ++        +   G+   LT RE + +  ++ G ++
Sbjct: 115 VRTVAAGQAILSPAVIKRL--ITSFVDKAPSRAESARGRLASLTAREEDVIRVLARGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI   L ++  TV  +++ ++ K     R  A   
Sbjct: 173 AEIGRELKLTEATVKAHVSRLLAKLGLANRVQAAIL 208


>gi|114321869|ref|YP_743552.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228263|gb|ABI58062.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 214

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 68/231 (29%), Gaps = 22/231 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLD 75
           +++      L    D           +    R + +TE   G S +     + F    +D
Sbjct: 3   QRQPPGPLTLLLVDDHAVVRAGYRRLLEQASRCWQVTEADSGESAYRACARERFDVVVMD 62

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + +  +           ++                    +G    Y + + 
Sbjct: 63  ISLPGISGLETLARLQR-----RAPEIRVLIFSM---HEEPVFAEQALSGGAAGYITKSS 114

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   G  +  D                +  D        L+ RE E   
Sbjct: 115 APEVLVEAVQRIAAGGHYLGPDV-------------RCRHGDADTAGLQSLSAREFEIFR 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG  S EIA +L IS  TV NY + I  K A    +     A+R  ++
Sbjct: 162 LLAEGCGSAEIARLLNISYKTVANYGSGIREKLALNNVAEMTRLAIRAGVI 212


>gi|77459289|ref|YP_348796.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77383292|gb|ABA74805.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 208

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 31/235 (13%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  + +   + ++ +    D L  +   +                G    +  R      
Sbjct: 1   MVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLIKARELKPDV 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +  S        ++      C      P            Y 
Sbjct: 46  VLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGAAGYL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +    +  +   + L+F   R I      ++ + +    N              L+ RE+
Sbjct: 98  TKGAGLPEMVQAIRLVFAGQRYISPQIAQQLAIKSFQPTN--------DSPFDALSEREI 149

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ +V
Sbjct: 150 QIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLAVRHGMV 204


>gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7]
          Length = 240

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 77/243 (31%), Gaps = 21/243 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++           
Sbjct: 4   AMTESATRDLLIQQMVSTITELDGQTAIENALEWLRRECSSERAMFFQFKGPVLLTF--- 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------------FCPVFHTLPENITPP 123
           ++S             +      V++                       +  L +     
Sbjct: 61  ITSSVDDAWGEAYRQHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVSAFYDELVDACELL 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   Y +     A     +  L    R I  ++ + +  L     ++ +         
Sbjct: 121 PAISYGYTN-HCRGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFC---S 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+  
Sbjct: 177 RGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCR 236

Query: 244 NIV 246
            ++
Sbjct: 237 GLI 239


>gi|307330665|ref|ZP_07609804.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306883726|gb|EFN14773.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 10/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   ++    +    +   G      +R        +D  +   
Sbjct: 1   MTRILIVDDQDDMRAGIRTMLALDPSLVVTGDLSDGLQVVPFLRDHPVDLVLMDIRMPGI 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +  R +            +    +    F      +       N + S T   A + 
Sbjct: 61  DGVEATRRIRKEHPP------EELRVIVLTTFDQDDIVLAALRAGANGFLSKTVSPAELV 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200
            G+  +                L+     +     D    + F+ LT RE + +  ++ G
Sbjct: 115 AGISEVV--RGGGALSAAATAALIGHMTDSPPPVIDRELLRRFDALTPRERDVVVLVASG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++EIA  + +S  TV  +    M K   + R+  +++  R  +
Sbjct: 173 LGNEEIAAQMSVSPFTVKTHAVRAMTKVGARDRAQLVSFTFRAGL 217


>gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli
           GR56]
          Length = 265

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 76/259 (29%), Gaps = 30/259 (11%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT  +  L     +  +    +       + +   + +G    +     +  +     +
Sbjct: 1   MRTRELPMLDDIGTIRRQFTAHETLDGRIDQAFEAMKRLGFEALIYDYTPVPYDLDGAIM 60

Query: 78  VSS-----DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT------------LPENI 120
           + S     +   D+          +   V Q       P F              + ++ 
Sbjct: 61  IPSLLKLRNIADDMHDYWFGRGYFRIDPVQQVALRSSAPFFWNYDTNADTLINRFMSDDT 120

Query: 121 T------PPAGMDNRYCSLTFDVARIRIGLM-LLFPKGRIILRDRLW---EIGLLAAYQA 170
                      M                 +  + F +     R  L    +  LLA    
Sbjct: 121 APVTRYLRERDMSTGVTVPVHMPGGDYATVTGIRFGEDSDFERHALRYIADFNLLAHVFH 180

Query: 171 NMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
               S      +      LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K
Sbjct: 181 ETAYSLFDRKARSVGTIHLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKK 240

Query: 228 TATKTRSGAIAYAVRNNIV 246
              + R+ A+  A    ++
Sbjct: 241 LGARNRTQAVVRATHYRLL 259


>gi|169794379|ref|YP_001712172.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|184159817|ref|YP_001848156.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159043|ref|YP_002321041.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215481936|ref|YP_002324118.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB307-0294]
 gi|239503857|ref|ZP_04663167.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB900]
 gi|260550220|ref|ZP_05824433.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260557934|ref|ZP_05830147.1| two-component system response regulator protein [Acinetobacter
           baumannii ATCC 19606]
 gi|301347127|ref|ZP_07227868.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB056]
 gi|301513592|ref|ZP_07238829.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB058]
 gi|301597105|ref|ZP_07242113.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB059]
 gi|332854806|ref|ZP_08435569.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332868936|ref|ZP_08438495.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332872813|ref|ZP_08440778.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|169147306|emb|CAM85167.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|183211411|gb|ACC58809.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Acinetobacter baumannii ACICU]
 gi|193078647|gb|ABO13693.2| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
 gi|213058203|gb|ACJ43105.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213985989|gb|ACJ56288.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter
           baumannii AB307-0294]
 gi|260406748|gb|EEX00228.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260408725|gb|EEX02030.1| two-component system response regulator protein [Acinetobacter
           baumannii ATCC 19606]
 gi|322509730|gb|ADX05184.1| Putative two-component response regulator [Acinetobacter baumannii
           1656-2]
 gi|323519745|gb|ADX94126.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332727808|gb|EGJ59212.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732979|gb|EGJ64181.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|332738974|gb|EGJ69836.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 216

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIHETASVDEFYERLENGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPSIPIIVVSAHEEASII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    I L                 +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRQVLDGEIWLPPNLPSNINL-----DPRAADETALAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|57234151|ref|YP_181859.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224599|gb|AAW39656.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 247

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 73/251 (29%), Gaps = 33/251 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V I+L  + E     +  +      +  +   D        +  L             
Sbjct: 20  SPVKILLADDHEVAREGLRKMLRCEADIEIVGEADNASDAIKLVQEL------------- 66

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   +D  +S     +L R +          V      +F   +          A 
Sbjct: 67  --KPQVIVMDVTISGMCGCELSRQLKA--------VYPPARVIFLTEYEAEQYTADALAN 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---- 181
             N + +       +   + ++   G +     L           N+             
Sbjct: 117 SINGFLTKNSSPELLSNTIRVVACGGSVWQEKLLENASKKMIKALNIRAERQNLSSEHSS 176

Query: 182 ------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE+E L  ++ G T+ EI+V +  +  T+  Y+ SI+ K     R+ 
Sbjct: 177 SAVSIVPQDVLSPRELEILIMVARGYTNKEISVNMDYAEITIKKYVKSILSKLNVSNRTL 236

Query: 236 AIAYAVRNNIV 246
           A   AV+  +V
Sbjct: 237 AGIAAVKFGLV 247


>gi|73749249|ref|YP_308488.1| LuxR family DNA-binding response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73660965|emb|CAI83572.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp.
           CBDB1]
          Length = 238

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 71/241 (29%), Gaps = 26/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E     ++ +  +   +  +            +             ++   
Sbjct: 20  IKVVLIDDHEIVRQGLATMLQKEPDIRLVG---DAPDSVSGLD------------IIEKT 64

Query: 68  LFQEQKLDSIV--SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                 LD  +  +    F L + +     DK          +    F +          
Sbjct: 65  NPDVVLLDVQLGNTDIDGFTLAKKIKNKYPDK--------MVIMLTGFDSELYLTEAVRS 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DF 184
             + +         +   + + +    I     L+      +      ++  +   K   
Sbjct: 117 KVDGFILKEHPRLILACAIRMAYSGISIWDTKILYRALTNISRSKENIETTPLVHDKFGV 176

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  +E   L  +++G ++ +I   L  + +TV  Y+ + M+K     R+     A  N 
Sbjct: 177 DLNEKEKIILHLLAKGYSNKDIGHKLEYTPSTVKKYVYNCMKKLGVSNRTQLAILANNNG 236

Query: 245 I 245
           +
Sbjct: 237 L 237


>gi|254251161|ref|ZP_04944479.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124893770|gb|EAY67650.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 218

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       +  L     +   +   +        +                  
Sbjct: 3   LNILLVDDHAIVRQGIRQLLVDRGVAREVTEAENGGDAMAAVDRQ--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 48  EYDVILLDISLPDTNGIEVLKRIKRK--------LPRTPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
          Length = 531

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M  +         M      +    F+     +    K  ++       ++  C      
Sbjct: 315 MHVVQNDEEIVRMMTQFALELAYGDFVCTILYV--NGKAVTVHEGAISAEMASCYQEDVL 372

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             Y   +++  +   P    + +   +  P  + + Y           + + L       
Sbjct: 373 RHYGRSIKQVAKSQVPSLRQVGDKTVMEVPFFVRDGYY--------GVLAVHLKETDEAK 424

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAV 208
                +  +  +     N           + +     LT RE++ L  + +G ++ EI+ 
Sbjct: 425 EAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSREMDVLELLVQGCSNREISE 484

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L IS +TV N+I +I +K     RS  IA   + 
Sbjct: 485 RLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 519


>gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
          Length = 163

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 5/160 (3%)

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ +   E  +     + PT L    F+               +         +   +  
Sbjct: 6   MKRVDGIEATRRLARHEAPTVLALTTFNEDKLLSGALRAGVAGFVLKDSSAEELIRAVRA 65

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      +       +        +M ++         +LT RE++ L  I  G ++ EI
Sbjct: 66  VARGDSYLDPAVTARVLNTYRRAPDMPRAL-----TSVDLTTRELDVLRLIGRGYSNAEI 120

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L IS  TV ++I  I  K   + R+ AI Y+  + IV
Sbjct: 121 ATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIV 160


>gi|94971090|ref|YP_593138.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553140|gb|ABF43064.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 213

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 16/218 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVR 88
           AR+I  D           L E        +VR          + + + +V       L  
Sbjct: 5   ARIIIADDHTLVAEACKKLLEG-DYDVVAVVRDGRALVHSASQLQPNVVVIDINMPLLNG 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A  +  K    +Q     F  +               + Y   T   A +   +  + 
Sbjct: 64  LDAGQQIKKASPAVQLV---FLTMSEEPELVKEAFRCGASAYVVKTGAAAELVTAVQEVL 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                +      E                     D  LT R+ E L  ++EG++  E+  
Sbjct: 121 SGHTYLSPSLARESA-------ASPTRPGFGIDSDVPLTERQREVLQLLAEGRSMKEVGA 173

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IL ++  TV  +   IM+    +  +  + YA++ +I+
Sbjct: 174 ILKLTTRTVAFHKYRIMKAVHARNNAELVRYAIKKHIL 211


>gi|121591834|ref|ZP_01679014.1| transcriptional regulator, LuxR family protein [Vibrio cholerae
           2740-80]
 gi|121546302|gb|EAX56587.1| transcriptional regulator, LuxR family protein [Vibrio cholerae
           2740-80]
          Length = 158

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 8/139 (5%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +   V    P            Y +       +   + ++    R I  +   ++ L   
Sbjct: 23  IVLTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQF 82

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A+             +L+ RE++ +  I++G+   +I+  L +S  TVN+Y   +  K
Sbjct: 83  SPASE--------NPFADLSERELQIMLMITKGQKVTDISEQLSLSPKTVNSYRYRLFAK 134

Query: 228 TATKTRSGAIAYAVRNNIV 246
                       A+R+ I+
Sbjct: 135 LNINGDVELTHLAIRHGIL 153


>gi|53717881|ref|YP_106867.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|67641504|ref|ZP_00440281.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|76811738|ref|YP_331839.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|121599103|ref|YP_994249.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           SAVP1]
 gi|124384005|ref|YP_001028097.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10229]
 gi|126438463|ref|YP_001057284.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126448700|ref|YP_001082907.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10247]
 gi|126453572|ref|YP_001064526.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134283586|ref|ZP_01770285.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167001490|ref|ZP_02267285.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|167717612|ref|ZP_02400848.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167736655|ref|ZP_02409429.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167813753|ref|ZP_02445433.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167822269|ref|ZP_02453740.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167843863|ref|ZP_02469371.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167892363|ref|ZP_02479765.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167900860|ref|ZP_02488065.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909077|ref|ZP_02496168.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167917118|ref|ZP_02504209.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217425093|ref|ZP_03456589.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226199835|ref|ZP_03795386.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237810421|ref|YP_002894872.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242318085|ref|ZP_04817101.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254174883|ref|ZP_04881544.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|254182175|ref|ZP_04888772.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254188105|ref|ZP_04894617.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254196568|ref|ZP_04902992.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254201861|ref|ZP_04908225.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|254207192|ref|ZP_04913543.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|254261107|ref|ZP_04952161.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254359697|ref|ZP_04975968.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|52208295|emb|CAH34227.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|76581191|gb|ABA50666.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
 gi|121227913|gb|ABM50431.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           SAVP1]
 gi|126217956|gb|ABN81462.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
 gi|126227214|gb|ABN90754.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126241570|gb|ABO04663.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10247]
 gi|134244995|gb|EBA45090.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|147747755|gb|EDK54831.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|147752734|gb|EDK59800.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|148028911|gb|EDK86843.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|157935785|gb|EDO91455.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160695928|gb|EDP85898.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|169653311|gb|EDS86004.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|184212713|gb|EDU09756.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217392113|gb|EEC32139.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225928186|gb|EEH24222.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503755|gb|ACQ96073.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|238522447|gb|EEP85891.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|242141324|gb|EES27726.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243062697|gb|EES44883.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|254219796|gb|EET09180.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 218

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L     +   +   +                G    ++    
Sbjct: 3   LQILLVDDHAIVRQGIRQLLIDRGIAREVKEAE---------------CGGDALVIAEKS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L     L   ++      +       
Sbjct: 48  EFDVILLDISLPDMNGIEVLKRLKRR--------LPSTPVLMFSMYREDQFAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMVSAISQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMIASGKRLTDIAHALSLSVKTVSVYRTRLLEKMKLSNNAELTFYVMSNRLV 210


>gi|271968827|ref|YP_003343023.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512002|gb|ACZ90280.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 214

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 19/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E       +     L      LD  +      
Sbjct: 5   VLLADDQAMIRHGLRLVIGTQPDLRVVGEAADGRAAVAAARRLRPDLVLLDIAMPGMTGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +  +           P  L    + T            + +        ++   +
Sbjct: 65  AAAHELLAAP----DP----PKILMLTTYDTDENLEGALRAGVSGFLLKVSPPEQLFAAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +       +  +A Y                 +T RE E LT I  G T+ 
Sbjct: 117 RTAVSGLATLDPAVTARV--MAGYVGAPAIPG--------TVTPREREVLTLIGRGLTNR 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI   L ++ +TV  +I  ++ K   + R+ A+ YA  + +V
Sbjct: 167 EITAALSVTESTVGTHINRLLAKLHLRDRAEAVRYAYEHGLV 208


>gi|167579202|ref|ZP_02372076.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 215

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 56/225 (24%), Gaps = 20/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIV 78
           T   + L    D       L   +     +  + E   A     L          +D  +
Sbjct: 7   TPRAARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEALALAGSLAPDLALMDIGM 66

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L                     L   +   +           + Y        
Sbjct: 67  QGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPAT 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +                      A               LT RE + L  ++
Sbjct: 119 EIVRAIGAVLGGQTFFSEG-----------IAARMIQASAEASPLDRLTPRERDILDALA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +G +S +IA   G+S  TV  +  ++ RK     ++  I +AV +
Sbjct: 168 QGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIDGQAELIKFAVEH 212


>gi|325970828|ref|YP_004247019.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026066|gb|ADY12825.1| two component transcriptional regulator, LuxR family [Spirochaeta
           sp. Buddy]
          Length = 219

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 11/216 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV--GASHFLLV-----RWDLFQEQKLDSIVSSDWPFD 85
           + R++ +D    +   +    E          +         +  E + D I+      D
Sbjct: 1   MIRILLVDDQPLFVESLRMSLENYTDDFQVVGIAKNGSSAIAMADELEPDVILMDVHLPD 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +A     + +  ++         +              + Y         +   + 
Sbjct: 61  ITGVVATKRILQEHRAIKIVMLST---YDEDEYVREALRIGSSGYLLKDISPTELIAAIR 117

Query: 146 LLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L      I        I  +    +         +     LT RE E    I+ G  + 
Sbjct: 118 ALHSGLVQISPKIATKLINAMYDGTSPKIPEVSSRFEWFDTLTDREKEIFGLIATGFDNQ 177

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +IA  L ++  TV N I++I  K   K R   I  A
Sbjct: 178 QIADRLLLAEQTVRNNISTIYSKLEVKDRFEIIRLA 213


>gi|317507621|ref|ZP_07965334.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254098|gb|EFV13455.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 218

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     V+ +    D L  +           R+                  
Sbjct: 2   ITVFLVDDHEVVRRGVAEMLEEDDGLTVVGQAATVAEALARI------------------ 43

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D  V      D        E       L           H + + I       
Sbjct: 44  --PAARPDVAVLDMRLPDGNGIELCRELRSKLPGLHCLMLTSYTDEHAMLDAIL---AGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++       +        +  ++          L+
Sbjct: 99  GGYVIKDIKGMELVAAVRAVGSGKSLLDNRAAAAL-------MHRLRTKAQGHSPLDALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  I EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   
Sbjct: 152 AQERTLLDLIGEGLTNRQIAGRMFLAEKTVKNYVSRLLAKLDVERRTQAAVL 203


>gi|313498051|gb|ADR59417.1| GacA [Pseudomonas putida BIRD-1]
          Length = 193

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G S   L R        +D  +      +  R +  S        ++      C      
Sbjct: 17  GESALKLARELKPDVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EED 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P            Y +    +  +   + L F   R I      ++ L         K +
Sbjct: 69  PFPTRLLQAGAAGYLTKGAGLDEMVQAIRLAFAGQRYISPQIAQQLAL---------KPF 119

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE++    I   +    I+  L +S  TVN Y   I  K +  +    
Sbjct: 120 QPQGSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVEL 179

Query: 237 IAYAVRNNIV 246
              AVR+ +V
Sbjct: 180 TLLAVRHGMV 189


>gi|209964709|ref|YP_002297624.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum
           centenum SW]
 gi|209958175|gb|ACI98811.1| nitrate/nitrite response regulator protein NarL [Rhodospirillum
           centenum SW]
          Length = 228

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 8/203 (3%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRC--MALSEKDKYYNVL 102
              +  L +                    D  +       DLV           +    L
Sbjct: 16  REGLKRLLDESPFKIVAEASNVREGVTVADQGLKPDLILLDLVNGGEEEAEAMRRLRQAL 75

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                +                   + Y         +   L L+    ++        +
Sbjct: 76  PNSRMVVLTTDLCTRRLSNALEAGADGYLMKDLSSDALTQSLRLVMMGEKVFPTHLAALL 135

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             ++           V       L+ RE++ L  +  G ++  IA  L I+  TV  ++ 
Sbjct: 136 --ISGRVNGNGLEMPVSRK---GLSQREIQILRCLLNGDSNKMIANHLNITEATVKVHLK 190

Query: 223 SIMRKTATKTRSGAIAYAVRNNI 245
           S++RK     R+ A  +A+ N I
Sbjct: 191 SLLRKINASNRTQAAIWALNNGI 213


>gi|33600106|ref|NP_887666.1| two-component system response regulator [Bordetella bronchiseptica
           RB50]
 gi|33567704|emb|CAE31618.1| two-component system response regulator [Bordetella bronchiseptica
           RB50]
          Length = 208

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 73/239 (30%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D ++              + A                
Sbjct: 2   IRVLIVDDHTIFRDGLKRLLAEEDDISVTGETADASDALRLLRA---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      D++  +             R   +   ++      +       
Sbjct: 47  SYDVVLLDVNLRGRSGLDVLPSIRAEW--------PRLPVIVLSMYPAEQYALRAFEVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D   + + +      GR    +       ++    +     +    K   L+
Sbjct: 99  SGYVAKDMDYKALTLAIRQAASGGRYFPAE-------ISDKAVSAMARGEDLHDK---LS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  + +G    +IA  L +S  T++ Y   I++K    + +  + YA+R+ ++
Sbjct: 149 PREHQIMMLMVQGTRLTDIATQLIVSVKTISTYRQRILQKLKVGSNAELVQYAIRHRLI 207


>gi|319792683|ref|YP_004154323.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595146|gb|ADU36212.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 17/220 (7%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
              D       +   ++  +    + E   G     LVR        +D  +      D 
Sbjct: 6   LVDDHAIVRAGIKAFLTSFVEFRVVGEAGSGREAIDLVRSTDLDVLVMDLSMPGQSGIDA 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +           +        P  H     +       + Y +   D   I   +  
Sbjct: 66  LAMIRAK-----APDIGVLMLSGHPAEH---YALNLIRQGASGYLNKDCDPQEIATAIRT 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R I       +                +      L+ RE +    +++G++   I
Sbjct: 118 VALGRRYISPKVAELLA--------GELDRKDNAPPHKHLSEREFQVFLKLAQGESVGTI 169

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L +S  T++ Y   +M K    + S    YA++  ++
Sbjct: 170 GEELSLSVKTISTYRTRLMEKMNLSSNSDLTYYAMKAQLI 209


>gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
 gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
          Length = 203

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 61/223 (27%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + +   G      VR        +D  +     
Sbjct: 5   RVLIADDQALVRGALATLLGLESDLKVVAQVGRGDEVLDAVRKHAVDVALVDIDMPGRDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  S+      ++          F                +         +   
Sbjct: 65  LAATAEVVGSDLPCRCLIV--------TTFGRPGYLSRGMEAGAAGFIVKDTPPEALAEA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I  +   E  LL                    LT RE E L   + G  +
Sbjct: 117 IRKVHAGLRVIDPELAQESVLLG----------------PNPLTEREKEVLLAAATGADA 160

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +   TV NY++S + KT  + R+ A   A  N  +
Sbjct: 161 REIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203


>gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 223

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 58/204 (28%), Gaps = 8/204 (3%)

Query: 43  VSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
                 + A  + VG +        +      D ++      D      L          
Sbjct: 21  AGVRAELAAACDVVGEAASPAEAIAVIGAVSPDVVLLDVHLPDGGGLAVLEAFRGIAGAP 80

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                    V     + +         Y + T D   +   ++ +              +
Sbjct: 81  AFL---ALSVSDAAEDVVPMVRAGARGYVTKTIDTPALLDAIVRVRQGEPYFSP----RL 133

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                   +     +    +  +LT RE E L  ++ G     IA  LGIS  TV  ++ 
Sbjct: 134 AAFVLQAFSAPAE-EQADDELDQLTPREREVLHHLARGYAYKRIAARLGISPRTVETHVG 192

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           S++RK    +R     +A    +V
Sbjct: 193 SVLRKLQLSSRHELSHWAASRGLV 216


>gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 305

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 5/209 (2%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           AR++ +     +   + A+    GA    +           ++ V      D+    +  
Sbjct: 90  ARILIVGDCTLYRDYLAAVLASHGAVAPGVAWDLPSLIAAYETTVPRVILLDMSTRNSAM 149

Query: 94  EKDKYYNVLQRPTELFCPVFHTLP-ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
              +   +  +   +   V      E +         Y   +  +  + + +  +     
Sbjct: 150 LLRQALKLSPQVRVIVLGVSEDDESEIVACAEAGVAGYHLRSDSLKDLLVLIHKVAAGES 209

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +        +  +   + +   S      K+  LT RE++ L  +  G ++ +IA  L I
Sbjct: 210 LCSP----RVSAILLRRLSTLASQRQPVHKELVLTSREIQILRLLEMGLSNRDIAEQLCI 265

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + +TV N++ S++ K    TR+ A A A 
Sbjct: 266 AVHTVKNHVHSLLAKLGVSTRAQAAALAR 294


>gi|90797252|gb|ABD97988.1| transcriptional activator AlpR [Azospirillum lipoferum]
          Length = 234

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 60/217 (27%), Gaps = 11/217 (5%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK---LDSIVSSDWPFDLVRCMALSEKD 96
               +   R  +    +G   +         +         V  ++P + V     +  +
Sbjct: 16  TDEDALFRRFESAATELGYPFYAFGALWGDPDAIKLNPAPAVRLNYPAEWVAHYFSTGYN 75

Query: 97  KYYNVLQRPTELFCPVFHTLPE-------NITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           K   V+         V             +     G+ +        +      L +   
Sbjct: 76  KIDPVVLVAPYAQTSVTWDELRSYRPEFFDDAATFGLRSGIAIPLRAIQGCY-VLCVASG 134

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R I       + L A      ++       +D  LT   V+ +     G ++ EI   
Sbjct: 135 DDRPIRPKERARLELFAHGLFAAYQRLRELPAQDHGLTANTVQVIRLSMAGLSTAEICSR 194

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++ + V+  +    +K      +     A++  IV
Sbjct: 195 LKLTMDGVHWCLKDARKKLKCANTAQVYLKAIQQGIV 231


>gi|114331815|ref|YP_748037.1| two component transcriptional regulator, LuxR family protein
           [Nitrosomonas eutropha C91]
 gi|114308829|gb|ABI60072.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           eutropha C91]
          Length = 210

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 72/222 (32%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S T  +    E   G     +VR   F    LD  +      
Sbjct: 4   VMITDDHAIVRQGLKQILSETGDISVTGEAESGFQAMKVVRQQDFDVMLLDISLPDRNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+++ +   + +           L   + +     I         Y +     A++   +
Sbjct: 64  DVLKQIKKEQSN--------LAVLMLSMHNESEFAIRALKAGAAGYLNKQSAPAQLVTAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + I      E+        +              L+ RE + L  I+ GK   
Sbjct: 116 RQVASGQKFITPALAMELANAITSNTDRPLHAS--------LSDREFQTLCLIASGKGLS 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI+  + +S  TV+ Y A ++ K      S  I YA+ +++V
Sbjct: 168 EISEEICLSPKTVSVYRARLLEKLKLTNNSELIRYAIMHHLV 209


>gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 227

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 15/229 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +  +     +    G     +V  +       D ++     ++
Sbjct: 5   ILVVDDDLGTRLSISDYLELSGY-SVIMADDGQEALAMVEENNPDLIVTDIVMPRLNGYE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +    + +   V+               E I       + Y    F++  +   + 
Sbjct: 64  LVRRVRQKAEFRLLPVILLTERT------KTQERILGYQSGCDLYLPKPFELEELAAAIR 117

Query: 146 -LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWI 197
            LL     I    R      L        +  +               LT RE E L  +
Sbjct: 118 NLLERSQIIQSEYRFPHQDNLETSITGKLRDSNHALSTQIHAPKLLSSLTTREQEVLELL 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ +I   L +S  TV  Y++S++RKT T  R+  + +A+++ +V
Sbjct: 178 THGLSNADIGNQLHLSPRTVEKYVSSLLRKTLTSNRAELVRFAMKHGLV 226


>gi|148257323|ref|YP_001241908.1| two-component response regulator [Bradyrhizobium sp. BTAi1]
 gi|146409496|gb|ABQ38002.1| putative two-component response regulator (LuxR family with
           receiver domain) [Bradyrhizobium sp. BTAi1]
          Length = 216

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 66/229 (28%), Gaps = 18/229 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
            T+    +    D           +     +  + E   GA  + L +        +D  
Sbjct: 4   MTNAAGTIMLVDDHAVVREGYRSMLQKQHGLRVVAEASDGAEAYRLFKEVRPDLVIMDLT 63

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R +           +         +       +         Y + +   
Sbjct: 64  MPGVGGIEGIRRIRQ---WDRDARILVF-----TMHENAGFAVQAIRAGARGYVTKSSPP 115

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +M +      I  D   E+ L      +              LT RE E +  +
Sbjct: 116 EILVRAVMEVLGGAIAISPDIDHELAL------SRLCGERAAAD---VLTAREFEVMQML 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +T++EIA  L +S  T+ N  + I  K    T    +  A+R  ++
Sbjct: 167 LAERTTEEIASALHLSPKTIANLHSLIKDKLGVGTDIELVRLALRQGLL 215


>gi|134096209|ref|YP_001101284.1| response regulatory protein [Herminiimonas arsenicoxydans]
 gi|133740112|emb|CAL63163.1| Response regulatory protein [Herminiimonas arsenicoxydans]
          Length = 238

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 71/243 (29%), Gaps = 26/243 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +D      +     +   L  +  LDC  S    +                 
Sbjct: 10  PITVLVVEDDVATRRALCLGIKKEPALKLLAALDCVKSALDWL---------------LH 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D++R  A                +           +      
Sbjct: 55  QPVDVLLVDLGLPDGSGIDIIRFCADRH--------PSCNIMVITTSSDQGSVVDSIEAG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYDVHWGKD 183
            + Y         I   LM L   G  I      ++              ++ +   G+ 
Sbjct: 107 ASGYVLKDAGPLDIGRALMELHAGGSPISPVIARKVLARMRDGNKADGAVRAENAPGGQK 166

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE   L  I+ G +  E+A  L +S  TV  +I +I  K +  +R  A+  A R 
Sbjct: 167 VFLTRREATILDLIARGDSYCEVARELALSVGTVQTHIKNIYDKLSVHSRGAAVYEAHRR 226

Query: 244 NIV 246
            ++
Sbjct: 227 GLL 229


>gi|294815185|ref|ZP_06773828.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443544|ref|ZP_08218278.1| response regulator receiver protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327784|gb|EFG09427.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
          Length = 231

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 59/230 (25%), Gaps = 10/230 (4%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D  RT  V  +    + + R        +            G     L          L
Sbjct: 6   DDAPRTRPVRVVLADDEAMIRAGVCAILAAEPGIEVVAEAADGHEAVELTLRHRPDVVLL 65

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +           +          V      +    F              + +    
Sbjct: 66  DVRMPRFDGLRAAEEIQR--------VAPDTAVVMLTTFSEDEYIARALDSGASGFLLKA 117

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   +  G+  +      +  +    +  +A                   LT RE + +
Sbjct: 118 GDPRELIAGVRAVADGAACLSPEVARRV--IARLGDGRLSRAWAARRTLEPLTRRERDVV 175

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             +++G ++ E+A  L +   TV  ++++++ +   + R           
Sbjct: 176 ALVADGLSNAEVAERLHVVEGTVKAHVSAVLARLGLRNRVELAILVHEAG 225


>gi|291446355|ref|ZP_06585745.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349302|gb|EFE76206.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V         L  ++     +        +    G      VR        LD  
Sbjct: 11  IRVAVVDDEQLVRSGLKLILGAAPDIEV------VACCDGIDAVGRVRELRPDVLLLDIR 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       ++R +              P       F                        
Sbjct: 65  MPEVDGLTVLRQVGTL--------TAPPAVAMLTTFDAARHIDDALRSGAVGLLMKNTAP 116

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   + +L   GRI+  + +  +                   +   LT RE + L  +
Sbjct: 117 EQLVHAVRVLAAGGRILAPEAVGPV----IEGYLAAGRDSGAADRTGALTDREGQVLALV 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ EIA  L +S  TV ++++S++ K     R  A   A R  ++
Sbjct: 173 GAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 221


>gi|330818613|ref|YP_004362318.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia gladioli BSR3]
 gi|327371006|gb|AEA62362.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia gladioli BSR3]
          Length = 220

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  +       +  L     +   +   +                GA         
Sbjct: 3   LNLLLVDDHAIVRQGIRQLLLDRRVADEVAEAES---------------GAEALAAADKG 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L     L   ++      +       
Sbjct: 48  SFDVILLDISLPDINGVEVLKRLKRK--------LPSTPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMISAIQQVAAGRKYVSPALAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IAV L +S  TV+ Y   ++ K      +    YA+ N ++
Sbjct: 152 DREYQTLCMLASGKRLTDIAVTLSLSVKTVSVYRTRLLEKMKLSNNAELTFYAMSNRLL 210


>gi|227113251|ref|ZP_03826907.1| DNA-binding transcriptional activator UhpA [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 196

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 36/221 (16%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSIV 78
           + +          A+++ L+  +       +       +H  L        Q    D  +
Sbjct: 5   ALIDDHLIVRSGFAQLLGLEPDIQVVAEFSS-------AHEALAGLPGRGVQVCICDISM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L+  +            +    +   V  +              + S      
Sbjct: 58  PEMSGLELLGKLP-----------KGMAVIMLSVHDSPELIEQSLTAGARGFLSKRCSPD 106

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G  +  +   ++                  GK   LT RE +  T ++
Sbjct: 107 ELIAAVHTVVRGGCYLTPEIAMKLA----------------SGKQDPLTRRERQVATKLA 150

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +G    EIA  LG+S  TV+ + A++M K            
Sbjct: 151 QGIAVKEIAAELGLSPKTVHVHRANLMEKLGVGNDVELARR 191


>gi|82702465|ref|YP_412031.1| two component LuxR family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82410530|gb|ABB74639.1| two component transcriptional regulator, LuxR family [Nitrosospira
           multiformis ATCC 25196]
          Length = 208

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       +  + T S  +  +   +       ++                  
Sbjct: 1   MNVLIVDDHAIVRQGLRQILTESGKIDLIAEAESGGEAMRQLRE---------------G 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      ++++ +             +   L   +       I       
Sbjct: 46  EWSVVVLDISLPDRNGIEVLKQIRKER--------PKLPVLMLSMHEEGLYAIRALKAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +       + +       +        +              L+
Sbjct: 98  FGYITKQSAPNELMAAINQAARGRKYLTPAVAEAMAESLGTDHDRPLHE--------TLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I+ GK+  + A  + +S  TV+ Y   +++K   K  +    YA++N +
Sbjct: 150 DREYQTLRLIASGKSLTDAAEEMHLSVKTVSVYRGRLLQKMKLKNNAEVTHYAIKNGL 207


>gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 218

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 31/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + V  +      +A +       +       L               
Sbjct: 5   LRVVVADDHALARAGVRMILESQPDIAVVGEAGDGHAAVAAADRL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D+ +         R +A                   P        +       
Sbjct: 50  RPDVVLMDTHLPRLDGVAATRRLAAHRV--------LLLTSGSP----EERLVEALRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFEL 186
             +         +   +  +     ++       +   +A              G   EL
Sbjct: 98  RGFLLKHASAGDLVAAVRAVAAGDMLLSPAATRALFERIAPMLHLDAAPPPSALG---EL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L  ++ G ++ EIA  L +S  TV  +++ ++RK   + R  A+ +A  + +V
Sbjct: 155 TERELDVLRLLARGLSNGEIAAQLFVSGATVKTHVSHLLRKLCLRDRVQAVVFAYDSGLV 214


>gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 219

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 13/228 (5%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             +  +    D       L   ++       ++E   G   +  V         +D  + 
Sbjct: 1   MLMLKVLIADDHAVVRQGLAYLINGQPDFKVVSEAANGTDAYARVEQGNIDILVMDLSM- 59

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
              P      +      +++  ++                          Y   +   + 
Sbjct: 60  ---PPGESGLVTTQRIHEHFPDVKILILSM---HEEQEYINKAIHNGALSYILKSSPDSE 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWIS 198
              GL  L    R I +     I L  +    +         + +  L+ RE E    ++
Sbjct: 114 FISGLNALSANRRYIDQ----NITLSKSDIKQIEAGGVDAHLQGYRSLSKREREVFPLMA 169

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G T+ EIA  L IS  TV  + ASIM K +  +R   + YAV ++++
Sbjct: 170 LGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHHHLI 217


>gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 202

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 64/224 (28%), Gaps = 24/224 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYA-LTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ L    D       +   +         + E +GA+  +  +   FQ   LD ++   
Sbjct: 1   MTKLLLADDHDLVREMIAAYLRAQGGFEVHVAESLGAALDVQEKNGPFQLVLLDLMMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  M             +          T              +   T D   + 
Sbjct: 61  DSLTGLGVMKAR---------AKCPVAILSGTATAEIGRRALRSGAAGFLPKTLDPQSLV 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +                       +  ++ +        LT RE + L  I  GK
Sbjct: 112 AAVHHMLLGETY--------------TPLDFLETGESEAEGPVRLTPRETDVLVGILHGK 157

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L I   TV  ++ ++ RK   K R+ A   A    +
Sbjct: 158 SNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTHAAMIARDMGL 201


>gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37]
 gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37]
          Length = 218

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 76/238 (31%), Gaps = 36/238 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            IV+  +       +  +  + D ++ +   D  +     +  +                
Sbjct: 11  KIVIADDHAVVRDGLKAVLAQIDHVSVVGEADNGIEALAMVKTM---------------- 54

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
               + D ++               E  ++    +            L + I       +
Sbjct: 55  ----RPDLLLLDSAMPLARGMEVFGEARRWSPETRCAVITGMTSPQVLADWIAV---GID 107

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                +     +  GL ++      + R  L                   + G++  LT 
Sbjct: 108 GLFLKSSPPEEMLRGLTMILAGDTYVARAVL------------DILEAADNDGREA-LTM 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  I+EG ++  IA  L IS  TV+N+   +M K    + +  +AYA+++ ++
Sbjct: 155 RERQVLYLIAEGCSNAAIAERLSISVKTVDNHRTRLMAKLQVHSVAQLVAYALKSGLL 212


>gi|333026198|ref|ZP_08454262.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746050|gb|EGJ76491.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 205

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 23/224 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDW 82
            L    D       L   ++    +    E   G     L          +D  +     
Sbjct: 2   RLLLCDDHAVVRAGLRALLASAAGIEVSGEAGSGEEAVALAAKLRPDLVLMDLQLGPGID 61

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +                 L    + T  +           Y         +  
Sbjct: 62  GVEATRRLLALPAPP--------RVLVLTTYDTDADVTRAVNAGATGYLLKAERPEELFA 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +          +A       ++         ELT RE + L  +S+G  
Sbjct: 114 AIHAAAQGRTALSP-------PVAHRVLAHLRAPRP------ELTPRERDILAQLSQGLG 160

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L IS  TV  ++  + +K    TR+GA+A A    ++
Sbjct: 161 NRDIARALHISEATVKTHLGRVYQKLGVDTRAGAVAVAKEQRLL 204


>gi|315644623|ref|ZP_07897755.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315280130|gb|EFU43427.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 201

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  + +     ++ L +  D +  +   +        +                  
Sbjct: 2   IRIVLAEDQKLLRGALATLLSLEDDIEVVGQAENGEEVMSMIQQY--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +  ++             +    F              
Sbjct: 47  EPDVAVLDIEMPLKTGLDIAESVQKNKS--------ACRVIILTTFARPGYFQRAMQAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  ++   R+I  +                      W     L+
Sbjct: 99  YGYLLKDTGSEELADAIRRVYDGKRVINSEL-----------------SLAVWDDPCPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +   ++G    +I   L +S  TV NY++  + K    TR  AI  A     +
Sbjct: 142 PREREVMKLAAQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKGWL 200


>gi|307729151|ref|YP_003906375.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307583686|gb|ADN57084.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 64/223 (28%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           V+    M    E   G     LVR   F    LD  +     
Sbjct: 3   RVLIADDHAIVRGGFRQFVADEPDMCVAAEAATGDETISLVREQAFDVVLLDIAMPDKNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +R +     ++          L    +      I       N Y +   +   I   
Sbjct: 63  IDTLRVIKQVRPEQG--------VLILSGYPESQYAINLLRAGANGYLNKDCEPDEIVRA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +       +                       L+ RE +    ++ G+  
Sbjct: 115 IRAVARGHRYLSEAVADTLA--------DNLDKPAAARPHEALSEREFQIFCKLAAGQIP 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y A ++ K      +    YA++N ++
Sbjct: 167 TQIAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|284039670|ref|YP_003389600.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818963|gb|ADB40801.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 214

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 68/239 (28%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRW 66
             I++  + +  +  +  L T                       + +   G     +V  
Sbjct: 8   TTILIADDHQLFSDGLRTLLTT---------------AHSPFTVIGQVYDGRDVIPVVHQ 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      D+ R +                 +   ++          A  
Sbjct: 53  LQPDLILLDINLPHRNGVDIARQLRRE--------FPHVGVVIITMYSYQKLTEELRAVG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   +    R+   L  +        +        L    A   +  D  + K F L
Sbjct: 105 VAGYLLKSASPDRLMTCLTSVVSGKPFFDQ--------LPNELAIDPRETDP-FVKQFSL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E +  I  G ++ +IA  L +S  T+  +  +I  K    + +  I +A    I
Sbjct: 156 TPREIEIIRLIRNGLSTSQIAERLFLSAETIKTHRKNIYFKLGINSVAALILFANEQGI 214


>gi|229591820|ref|YP_002873939.1| putative response regulator [Pseudomonas fluorescens SBW25]
 gi|229363686|emb|CAY51054.1| putative response regulator [Pseudomonas fluorescens SBW25]
          Length = 219

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  L         +   +       +  AL                
Sbjct: 4   KLLLVDDHALIRAGVRALVQDIPGYTVIGEANDGAQLLEQFSALL--------------- 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D ++ +             +   L   +       +       +
Sbjct: 49  PDIVLLDLSMKHTGGLDALQQLKR--------AYPKSKVLILSMHTDPELIMCALESGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L+ L    R +          +        +      G    LT 
Sbjct: 101 GYLLKDTTANELEHALLALRNNERYLSPAIA---HTVINQALVRSQGPITPAGHSHNLTA 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + +AVR  I+
Sbjct: 158 RQLEILRLIVRGKSTREIAHGLGLSIKTVEAHRSQIMKRLQIFDVAGLVLFAVREQII 215


>gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 254

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 64/241 (26%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +   +   +   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQARETLNACLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMHNVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 +   V QR T    P   +                            M      
Sbjct: 72  CEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGVEYVGDQHRQVTRYLCDSDMGTGVTV 131

Query: 133 LTFDVARIRIGLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSAAVNVTQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|332991848|gb|AEF01903.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           sp. SN2]
          Length = 201

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 29/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V       D +A ++ L+     + +     E +      L   ++      D  +
Sbjct: 3   RILVVEDQSLVRDAIATLLSLEDDFEISGKCANGQEALDW----LGANEVPDIILTDIEM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 DL   +A                +    F          A     +     D  
Sbjct: 59  PLVSGLDLAEKLAALSI--------GSKVVVMTTFSKPGYIKRALALGAKGFVLKEADSE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +    R+I      E+ L+A                +  L+ +E + L   +
Sbjct: 111 YLVSSLHKIVKGERVISP----ELALMAL-------------DDNNPLSAKESKALKLAA 153

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G  + +IA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 154 DGLKTHDIAQKLFLSEGTVRNYLSEAIAKLDATNRVDAARIAKQKGWL 201


>gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 216

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 62/238 (26%), Gaps = 34/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +       +         +  +               L               
Sbjct: 7   VRVLLVDDHAVVRQGLKLFLGLDPDIEVVGEAANGEEALQEAGRL--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++         R +                 +         +         
Sbjct: 52  HPDVVVMDLMMPVMDGIAATRQLRR--------AFPDTEVIALTSTLEEHKVNGAIEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +  +    +           + +     ++  LT
Sbjct: 104 ISYMLKDASSDTLADAIHAAARGEVRLHPEAARRL----------VRDFRSPEMRES-LT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E   L  I+ G ++ +IA   G+S  TV  +++ ++ K   ++R+ A  YA+R+ I
Sbjct: 153 PKETIVLQLIARGCSNRDIAQDQGVSEATVKTHVSRLLSKLGLESRTQAALYALRHGI 210


>gi|256396087|ref|YP_003117651.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256362313|gb|ACU75810.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 213

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 63/239 (26%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     + V  L      +  +            +  L               
Sbjct: 6   IRVVLADDHTVMRAGVVALLASEPTITIVGEAGDGREAVELVERLG-------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +   +             L    + T  E         
Sbjct: 52  -ADVALLDLRMPVLDGVAATTEIVAGKT--------GTRVLILTTYDTDAEIERAVEAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +        ++          +AA      +           LT
Sbjct: 103 IGYLLKDTTREQLVEAIRGAARGETVLAPR-------IAAKLVARMRQPAPVV-----LT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REV+ L  +++G ++ +I   L I+  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 151 TREVDVLNGVADGLSNADIGKRLVIAEATVKTHLLRVFAKLDVSDRTHAVVTALERGLL 209


>gi|220912826|ref|YP_002488135.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219859704|gb|ACL40046.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 226

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 32/239 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + + + +  + E     +  L    +    +         T R+ AL            
Sbjct: 15  QEPLRVFILDDHELVRQGLKDLLEG-EGFVVVGESGSAAEATRRIPAL------------ 61

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D  +      D        +       L          +           
Sbjct: 62  --------RPDISILDGRLPDGTGIEVCRDVRSLDPRLNCL---ILTSYDDEQAIRGAVL 110

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +  G+        +        I            +      +  
Sbjct: 111 AGAAGYILKQIKSDDLLAGIRKAATGASLFEPGVRERIV--------SGLTRTPTDPRME 162

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ +E + L  + +G T+ +I   L ++  TV NY++SI+ K   + R+ A  +  RN
Sbjct: 163 GLSAQEKKVLALVGQGLTNRQIGDELFLAEKTVKNYVSSILAKLGFERRTQAAVFVTRN 221


>gi|297200976|ref|ZP_06918373.1| two component LuxR family transcriptional regulator [Streptomyces
           sviceus ATCC 29083]
 gi|197712244|gb|EDY56278.1| two component LuxR family transcriptional regulator [Streptomyces
           sviceus ATCC 29083]
          Length = 233

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 15/223 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             LP  +D L  ++     +         T + G    +LVR         D  + +   
Sbjct: 5   DQLPVIADGLRTLLDAVPDIDVIG-----TTHNGMEAIVLVRTTRPDVVVTDLNLQTISG 59

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +++R +   E+     V                          +           +   
Sbjct: 60  LEMIRRLGKEEEPPSVVVF--------TASEDDKTVSDVLHASASCLLGKDASPQELITA 111

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +  ++ ++A       V   +  ELT RE E    ++ G ++
Sbjct: 112 IQAAAAGQTMLAPSIAARL--VSWFRAQPEPQEAVMCPEVAELTPREREVTRMVALGMST 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E+A  L I   TV  ++  +  K   + R+  ++ A R  ++
Sbjct: 170 EEVASELIIGEATVRTHLYRVRTKLGVRDRAELVSLAYRTGLI 212


>gi|167568377|ref|ZP_02361251.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 218

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L     +   ++  +                G+    +    
Sbjct: 3   LQILLVDDHAIVRQGIRQLLIDRGIAREVMEAE---------------CGSEALAITDRS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +                      +      +       
Sbjct: 48  AFDVILLDISLPDMNGIEVLKRLKRKL-----PGTPVLMFSM---YREDQFAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMVSAISQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMIASGKRLTDIAHALSLSVKTVSVYRTRLLEKMKLSNNAELTFYVMSNRLV 210


>gi|46201852|ref|ZP_00208275.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 238

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ I++  + E     + H+  + +    +I           +    +           
Sbjct: 18  DEMKILIADDHELFRDGLRHVLDQFEGPPTIIEASDFHQAIAAVQTQKD----------- 66

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +      +   ++                 +     
Sbjct: 67  ---IDIVLLDLTMPGMAWAEGLAKLKELLPSEVPLIV-------LSASDDRRHVLQAVNM 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   T     +   L L+   G  +    L + G           +          
Sbjct: 117 GAAGFIPKTSSSRVMLSALQLVLSGGVYLPPALLDQSG-----PGGDDGAPVAGESAIAA 171

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ E L  + +GK++ EIA +L ++  TV  ++ +I++      R+ A+  A    +
Sbjct: 172 LTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAASHLGL 231


>gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
          Length = 552

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 17/215 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           M  +         M      +    F+     +    K  ++       ++  C      
Sbjct: 336 MHVVQNDEEIVRMMTQFALELAYGDFVCTILYV--NGKAVTVHEGAISAEMASCYQEDVL 393

Query: 96  DKYYNVLQRPTELFCPVFHTLPE--NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             Y   +++  +   P    + +   +  P  + + Y           + + L       
Sbjct: 394 RHYGRSIKQVAKSQVPSLRQVGDKTVMEVPFFVRDGYY--------GVLAVHLKETDEAK 445

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAV 208
                +  +  +     N           + +     LT RE++ L  + +G ++ EI+ 
Sbjct: 446 EAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSREMDVLELLVQGCSNREISE 505

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L IS +TV N+I +I +K     RS  IA   + 
Sbjct: 506 RLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 540


>gi|167842293|ref|ZP_02468977.1| probable two-component response regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 217

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 56/222 (25%), Gaps = 20/222 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L   +     +  + E   G   +   +        LD  +     
Sbjct: 14  RILIVEDHPVVRLGLKNLLDAAPPLKVVAEVEDGLEVYAACQRHAPHIVLLDLGLPGMSG 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +    +      +                         N Y         +   
Sbjct: 74  ID---VIHQLRRRWSDLGIV-----VMTADTAEHRASAALLAGANGYVLKNSSQQVLLET 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  ++     +                            +  LT RE + L  I+EG  +
Sbjct: 126 LWKVWRGHTALDPA-----------LNAAQLGTPSAAPAEVALTPRERQVLKLIAEGCRN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++A  L I+  TV  +  ++MRK      +    +A R  +
Sbjct: 175 RDVAERLTITIKTVETHRLNLMRKLDAHNAADLTNWAHRLGL 216


>gi|83717466|ref|YP_440522.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167617321|ref|ZP_02385952.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257141183|ref|ZP_05589445.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83651291|gb|ABC35355.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 56/225 (24%), Gaps = 20/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIV 78
           T   + L    D       L   +     +  + E   A     L          +D  +
Sbjct: 7   TPRAARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEALALAGSLAPDLALMDIGM 66

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L                     L   +   +           + Y        
Sbjct: 67  QGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPAT 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +                      A               LT RE + L  ++
Sbjct: 119 EIVRAIGAVLGGQTFFSEG-----------IAARMIQASAEASPLDRLTPRERDILDALA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +G +S +IA   G+S  TV  +  ++ RK     ++  I +AV +
Sbjct: 168 QGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIDGQAELIKFAVEH 212


>gi|310827838|ref|YP_003960195.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612]
 gi|308739572|gb|ADO37232.1| hypothetical protein ELI_2249 [Eubacterium limosum KIST612]
          Length = 206

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 31/232 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D   +  +  +      +  +   +                G    +L    
Sbjct: 1   MKVIVIDDDRLVSVSLKTILEADPEIEVVALGNS---------------GGEAVVLYNEY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +   +        +    L+   F      I       
Sbjct: 46  KPDILLMDIRMDGMTGLEAGELILAED--------RDARILYLTTFLDDEYIIKALKIGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   L  ++    +   + + +I +L                  + ++
Sbjct: 98  KGYLLK-QAFESIVPALKAVYSGQSVFGDEIVTKIPMLLG-------GEAAVDFSAYSIS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            R++E +  +++G ++ EI+  L +S  TV NYI++I+ K   + R+    +
Sbjct: 150 ERDLEIIEGVAQGLSNREISETLFLSEGTVRNYISNILDKLELRDRTQLAIF 201


>gi|293413618|ref|ZP_06656267.1| two-component system [Escherichia coli B185]
 gi|291433676|gb|EFF06649.1| two-component system [Escherichia coli B185]
          Length = 209

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +  +  +         +  D      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAW-----SALIRDDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +         +   +   ++       +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQK--------PQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVGLGGHYLCADAILAL-----------RGGGQPAQALEILTPREREVFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + +A+ ++++
Sbjct: 158 VKGDSVKEIAFKLALSHKTVHVHRANVLGKLNCHSTIELVHFALDHHLL 206


>gi|326794373|ref|YP_004312193.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326545137|gb|ADZ90357.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  +   D                G +    +++ 
Sbjct: 3   IKLLITDDHSIVREGLKQLFCLYDDIDVIDEADS---------------GDALLKKLKYL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD ++      +L+  ++                      +             
Sbjct: 48  KPDVVTLDMVMPGKCGIELIEEISEKH-----PDTPLLILSM---HNEAQVTRGSLRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S   D + +   +  L   GR I  D   ++                   K   L+
Sbjct: 100 QGYLSKDCDASTLIEAVRKLASGGRYIHSDVAEKLAFELE---------PEKAPKHENLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G +  +IA  L IS+ TV+ +   +M+K    + S  + YA+   ++
Sbjct: 151 KREFHVFCQLAKGFSITDIAHELSISKKTVSTHKFRLMQKMDFSSHSEIVRYALNYELI 209


>gi|326381419|ref|ZP_08203113.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326199666|gb|EGD56846.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 209

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VL  +       +  +   S  ++ +               L                 
Sbjct: 1   MVLADDHGAVREGLRLVLEGSGEISVVGEAADGGEAIRAALRL----------------- 43

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
              + D +V      +    +                 L    F      +   +   + 
Sbjct: 44  ---RPDVVVMDVRMPE----VDGLAATAAVVAQTDARVLVLTTFDIDDYVLGALSAGASG 96

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTG 188
           +   +   A +  G+  +     ++                +  ++     G D  ELT 
Sbjct: 97  FLLKSASGAELVAGVHRVADGDAVLDAAVTRV-------VVDAMRARPADPGPDLSELTD 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           REV+ L  +  G ++ +IA  L I   TV  +++ ++ K   ++R  A   A R+ 
Sbjct: 150 REVQVLGGLGAGLSNAQIAGRLTIGEATVKTHVSRVLMKLGVQSRVQAAVLAARSG 205


>gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   +   P                   GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   +L    LLA    +  +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIFSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 NLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 254

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALQTLDSCLDRVFRDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPEN------------------ITPPAGMDNRYCS 132
                 ++  V QR T    P   +   +                      +GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCAGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   ++    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAAAAQAPRLAEAQVLPFLLLAHAFQARAQELLEPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|167841529|ref|ZP_02468213.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 218

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L     +   +   +                G+    +V   
Sbjct: 3   LQILLVDDHAIVRQGIRQLLIDRGIAREVTEAE---------------CGSEALAIVEKS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 48  AFDVILLDISLPDINGIEVLKRLKRR--------LPRAPVLMFSMYREDQFAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMVSAISQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMIASGKRLTDIAHALSLSVKTVSVYRTRLLEKMKLSNNAELTFYVMSNRLV 210


>gi|296119236|ref|ZP_06837805.1| two-component system response regulator [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967757|gb|EFG81013.1| two-component system response regulator [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 212

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +   +  +  +  +    +            G    +L+   
Sbjct: 2   IRVLLADDHEIVRLGLRAILEEAQDIEVVGEVATAEA-----AISAAQAGGIDVILMDLR 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                +   ++      +  + +          +   P  L    + T  + +       
Sbjct: 57  FGAGIEGTRVM---GGAEATKRI-------RDAMDNPPKVLVVTNYDTDADILGAIEAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +         ++A       ++          LT
Sbjct: 107 VGYLLKDAPPVELTSAVRSAAEGDSALSS-------MVADRLMTRVRTPRSS------LT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ EI   L +S  TV +++  I  K   ++R+ A+A A    ++
Sbjct: 154 PRELEVLQLVAGGSSNREIGQELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212


>gi|209521106|ref|ZP_03269835.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209498452|gb|EDZ98578.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 220

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 65/243 (26%), Gaps = 32/243 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              + ++++L  +          L   S  +              R  AL          
Sbjct: 1   MSAETISVLLVDDHAVVREGYRRLLELSADVTVCGEAGDATHAYQRFCAL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      + +R M   E D           L   V          
Sbjct: 51  -----RPDVVVMDVSLPGASGIEAMRRMLAREPD--------ARVLIFSVHEESIFVRRA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y +       +   +  +  +   +  D    + L         ++       
Sbjct: 98  LDAGALGYVTKASAPDVLVEAVRSIARRAGYLSPDVSQALAL---------RTAFNEGPP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE E L  + +G T   IA  LG+S+ TV N+ + I +K            A R
Sbjct: 149 GRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMANR 208

Query: 243 NNI 245
             +
Sbjct: 209 LGL 211


>gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 254

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 70/241 (29%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   +   P                   GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   +L    LLA    +  +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+A  +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVARGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300]
 gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300]
          Length = 199

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++           + A     G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTF--QPDVESVLQA---KDGQEAIQLLEKEPVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +   + +    V+          F              + Y      +A + 
Sbjct: 60  TGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|149275963|ref|ZP_01882108.1| response regulator [Pedobacter sp. BAL39]
 gi|149233391|gb|EDM38765.1| response regulator [Pedobacter sp. BAL39]
          Length = 220

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +       + +     D +  M      +    +M A               D
Sbjct: 2   IRIAVTDDQVMFRECLVNNIKTFDNMQVMFEAGNGIELLKQMDA------------CGDD 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R + +   D           +   V               
Sbjct: 50  KPDIVLMDLNMPEMNGMEATRKLKVDHPD--------VRVIVLSVHGEEKHISRMIQQGV 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +   ++  ++  +   +  G       L  +   +    N  K +D        LT
Sbjct: 102 NGYIAKNSELTELKNAIEATYNNGFYFNELVLKTLQSGSLLNKNNVKGFDAASS----LT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I +  T+ EIA  L IS  TV+ +  +++ KT  K  +G + +A +N ++
Sbjct: 158 QREKEILRLICDECTTAEIAEALSISLRTVDGHRNNLLVKTGAKNVAGLVVFAFKNKLI 216


>gi|189424620|ref|YP_001951797.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420879|gb|ACD95277.1| two component transcriptional regulator, LuxR family [Geobacter
           lovleyi SZ]
          Length = 199

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 62/222 (27%), Gaps = 29/222 (13%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   V+       + E   G     L+R        LD  +     
Sbjct: 5   RLVIADDHAIFRQGLRSLVAMADDCEIVGECSRGDEALELIRQLRPTVAVLDISMPGLDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              V  +          V+                         N Y +  F   ++ + 
Sbjct: 65  LSAVAALRREG--DLTPVV------ILTTHDDPLMLERAKCSGANGYVNKEFAFEQLLLS 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +     ++                               LT RE E +  ++ G +S
Sbjct: 117 LRKVADGTVLLEESA--------------------PATSSTALTDREREVIRLVACGMSS 156

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             I   LGIS  TV+N+  +IM K    T +  + YAV+  +
Sbjct: 157 RLIGETLGISNKTVDNHRTNIMGKLHIHTTAELVRYAVKLGL 198


>gi|294085444|ref|YP_003552204.1| LuxR family two component transcriptional regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665019|gb|ADE40120.1| two component transcriptional regulator, LuxR family [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 207

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 13/193 (6%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            + + AS            + +D +       D+     LS                   
Sbjct: 27  IQVMTASTLGQCIELTGDAKDIDVVALDLNMPDMKGVQGLSRMRGALP--NEVPVALMGH 84

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                +           +   +     +   L L+      I       + +        
Sbjct: 85  TLDPQQMRDALRLGAAGFLPYSMTSDALLSALRLMASGEIFIPVSVAEHVQI-------- 136

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    KD  L+ RE E L  +  G ++ +IA  +G+S  T+  ++ S+  K   + 
Sbjct: 137 ---AKPSTAKDTFLSKREREVLDGLLSGHSNKQIAERIGLSEVTIKYHLKSLRSKLGARN 193

Query: 233 RSGAIAYAVRNNI 245
           R+ A   A+   I
Sbjct: 194 RTHAALRAIELGI 206


>gi|317132401|ref|YP_004091715.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470380|gb|ADU26984.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 208

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 69/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D   ++ +  +    + ++                 L               
Sbjct: 1   MTVLIVDDDPLVSTSLKTIVEADEEISVCGTGGSAADAARLYEQLV-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +     D           LF   F      I       
Sbjct: 47  -PDILLMDIRMGKQTGLDAGREVISRHHD--------ARVLFLTTFADDDYIIEALRIGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   I   L  ++    +   D + +I     +               + LT
Sbjct: 98  KGYLLK-QNFESIVPALKAVYAGQTVFGEDIVAKIPSYFGHV--------PPDFSAYGLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E   L  I+EG ++ EIA  + +S  TV N I++I+ K   + R+    +  +   
Sbjct: 149 EKESGLLALIAEGLSNKEIASRVFLSEGTVRNSISAILEKLHLRGRTQLAVFYYKCGY 206


>gi|77359651|ref|YP_339226.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874562|emb|CAI85783.1| putative regulator in two-component regulatory system ; LuxR family
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 216

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +++ +  D    +   +           E   +S F      L +++ LD ++       
Sbjct: 1   MSQFLIADDHPLFREALKGALTVKFDDLEVFESSDFDSTLQVLSEQEDLDILLLDLHMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                 L    + Y  L                           +   +     I   + 
Sbjct: 61  NGDLYGLIRIREDYPSLPIAVVSG---SEDANIVSKVMGYGAMGFIPKSSSSDDIANAIN 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      +  +   ++  +      +             LT ++   L ++ EG  + +
Sbjct: 118 QILEGDTWLPTELKNKVAEIQGEDREIAAQVAS-------LTPQQYRVLQYLHEGLLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 171 IAYELHISEATVKAHITAIFRKLGVYNRTQAVLIAAKLQL 210


>gi|315505229|ref|YP_004084116.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315411848|gb|ADU09965.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 212

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            ++  R++  D        + A+ E       V  +           E  +D ++     
Sbjct: 3   DNVPVRLLLADDHPVVRAGLRAVLETEPGLVVVAEAATAEEAVTRAGEGDIDVVLMDLQF 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +     + +        R        + +  + +         Y         +   
Sbjct: 63  GKGMGGAEATARITARPGAPRVL--IVTTYDSDADTLPAIEAGATGYLLKDAPPEDLAAA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +          +A    N  ++          LT RE E L  +++G ++
Sbjct: 121 VRTAAAGRTTLAP-------TVANRLMNRLRTPGTA------LTRRETEVLALVADGLSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I   L ++  TV +++A I  K    +R+ A+A A    ++
Sbjct: 168 HSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210


>gi|116251601|ref|YP_767439.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256249|emb|CAK07330.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 207

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 58/225 (25%), Gaps = 29/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   + + R          +  +            ++   +      LD  +   
Sbjct: 8   VVDDHPLFREGVTR-----SLSEISGFIVVGEGASSDDAAMIASDNHPDIMLLDVSMPGG 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTEL---FCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                             +VL R          V   +   +         Y        
Sbjct: 63  ------------GLSAISDVLARSPTTKVLMLTVSEEVDTLLGALQRGAMGYVLKGVGSR 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +    R I      ++   + +             +   LT RE E +  ++
Sbjct: 111 GLAEAIQTVLRGSRYISPTMSAKVMENSLH---------GGTPEKNSLTPREREVMDLVA 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +G ++  I + L +   TV +++  I+ K     R+ A       
Sbjct: 162 QGLSNKHIGLRLSLQEKTVKHHMTQILSKLGASNRTEAALQWRER 206


>gi|86359968|ref|YP_471858.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284070|gb|ABC93131.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 264

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCM 90
               +       + +   + +G    +     +  +     +V S     +   D+    
Sbjct: 12  FTTHETLEGRIDQAFEAMKQLGFEALIYDYTPVPYDIDGVIMVPSLLKLRNIAEDMHDYW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPAG-----------------MDNRYCS 132
                 +   V Q       P F    P+  T                     M      
Sbjct: 72  FDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIRRFMSEDTAPVTRYLSERDMSTGVTV 131

Query: 133 LTFDVARIRIGLM-LLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDF--EL 186
                      +  + F +     R  L    +  LLA        +      K     L
Sbjct: 132 PVHMPRGDYATVTGIRFGRNSDFERHALRYIADFNLLAHVFHETAYALFDRKDKSVGIRL 191

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K   + R+ A+  A    ++
Sbjct: 192 TERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 251


>gi|239816962|ref|YP_002945872.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803539|gb|ACS20606.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 214

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 26/231 (11%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           N     R   V   P   D L   +     +       +  E +      L+        
Sbjct: 3   NDAAPVRLFLVDDHPLVRDGLRARLGALPGLEIVGEAGSAAEAL-----ALIETLQPDLL 57

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      DL   +   ++ +    +         ++                Y  
Sbjct: 58  LMDVGMKDMNGIDLAALV--LQRHQPAPHVV-----MLSMYDNPEYVQKALQVGARGYVL 110

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                A I   +  +   G  +      ++                +      LT RE E
Sbjct: 111 KDAPAAEIVAAIEAVSAGGTFLSPAVSKKLF--------------RNQAPRPLLTPRESE 156

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ +  G++S +IA  LG+S  TV  +  SI R+   + ++  I YAV +
Sbjct: 157 ILSALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELIKYAVEH 207


>gi|255655281|ref|ZP_05400690.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 74/242 (30%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +++     +  + +  + L  +                    G       
Sbjct: 1   MNKIKVLIVDDEKLIRKGLKIILSSYNDLEIVGDASN---------------GYEALEFC 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + +      +D  +         R +          +L          F+          
Sbjct: 46  KTNDVDIVLMDIRMKVCDGVLGTRLIKEYNNSITLLIL--------TTFNDDEYIKDAMK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +  G+   F    ++ +    +I              +  +   +
Sbjct: 98  FGASGYLLKDSSDEVLHEGIRSSFFGNIVLDKSVAEKIMT-----PEKMIEQEHLYD-MY 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+    +A +N 
Sbjct: 152 NLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITNILGKLELRDRTQLAIFAFKNK 211

Query: 245 IV 246
           IV
Sbjct: 212 IV 213


>gi|33592739|ref|NP_880383.1| response regulatory protein [Bordetella pertussis Tohama I]
 gi|33572387|emb|CAE41947.1| response regulatory protein [Bordetella pertussis Tohama I]
 gi|332382154|gb|AEE67001.1| response regulatory protein [Bordetella pertussis CS]
          Length = 224

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 32/235 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +D      V         ++ +            +                  
Sbjct: 13  LRIAIVEDDPAFRHAVVAAIAHEPGMSVLAQAQTCADALAMLQ---------------GP 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D++         +   ++         +F      +       
Sbjct: 58  PADVLLVDLGLPDGSDIDVI--WQARRLWRDCGIM------VNTMFGDDVHVLRSIEAGA 109

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFE 185
             Y     + A I   +  L   G  I         L+A    +  +             
Sbjct: 110 CGYLLKDSEPAGIVRDICALRDGGSPISP-------LIARQLLDRLREGLPPAEPPAATA 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L+ RE + L  I+ G T DEIA  L +SR+TV  ++  I RK    ++  AI  A
Sbjct: 163 LSPRERQVLERITLGYTYDEIASELEVSRHTVQTFVRRIYRKLQVHSKVDAINAA 217


>gi|51598137|ref|YP_072328.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108810090|ref|YP_654006.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|108813820|ref|YP_649587.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|145600624|ref|YP_001164700.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|150261036|ref|ZP_01917764.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|153950690|ref|YP_001403024.1| UhpA family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162421103|ref|YP_001608412.1| two-component system response regulator [Yersinia pestis Angola]
 gi|165927024|ref|ZP_02222856.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936885|ref|ZP_02225451.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009570|ref|ZP_02230468.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213158|ref|ZP_02239193.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401674|ref|ZP_02307168.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421104|ref|ZP_02312857.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425636|ref|ZP_02317389.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466901|ref|ZP_02331605.1| response regulator [Yersinia pestis FV-1]
 gi|186897358|ref|YP_001874470.1| two component LuxR family transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218931003|ref|YP_002348878.1| two-component system response regulator [Yersinia pestis CO92]
 gi|229836409|ref|ZP_04456576.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Pestoides A]
 gi|229839715|ref|ZP_04459874.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841799|ref|ZP_04461955.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904334|ref|ZP_04519445.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Nepal516]
 gi|270488274|ref|ZP_06205348.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|51591419|emb|CAH23085.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777468|gb|ABG19987.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108782003|gb|ABG16061.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|115349614|emb|CAL22590.1| two-component system response regulator [Yersinia pestis CO92]
 gi|145212320|gb|ABP41727.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149290444|gb|EDM40521.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|152962185|gb|ABS49646.1| transcriptional regulatory protein UhpA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353918|gb|ABX87866.1| transcriptional regulatory protein UhpA [Yersinia pestis Angola]
 gi|165915127|gb|EDR33738.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921130|gb|EDR38354.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991492|gb|EDR43793.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205456|gb|EDR49936.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961233|gb|EDR57254.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049056|gb|EDR60464.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055326|gb|EDR65120.1| transcriptional regulatory protein UhpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700384|gb|ACC91013.1| two component transcriptional regulator, LuxR family [Yersinia
           pseudotuberculosis PB1/+]
 gi|229678452|gb|EEO74557.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Nepal516]
 gi|229691138|gb|EEO83191.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696081|gb|EEO86128.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706477|gb|EEO92484.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis Pestoides A]
 gi|262363713|gb|ACY60434.1| two-component system response regulator [Yersinia pestis D106004]
 gi|262367647|gb|ACY64204.1| two-component system response regulator [Yersinia pestis D182038]
 gi|270336778|gb|EFA47555.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|320017338|gb|ADW00910.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 196

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 42/231 (18%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V   + +   S  + L +  + +  +            +  L                
Sbjct: 4   RVVFIDDHDIVRSGFAQLLSLEEDIQVVGEFSSAKQARAGLPGL---------------Q 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +  +   DL++ +                 +   +  +     T       
Sbjct: 49  ANICICDISMPDENGLDLLKGLPS-----------GMGVIMLSMHDSPALVETALERGAR 97

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S       +   +  +   G  ++ +   ++  +A                   LT 
Sbjct: 98  GFLSKRCKPEDLISAVRTVGSGGVYLMPEIAQQLARVAV----------------DPLTR 141

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE E    ++EG    EIA  LG+S  TV+ + A++  K            
Sbjct: 142 REREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKK 192


>gi|302521038|ref|ZP_07273380.1| two component system response regulator [Streptomyces sp. SPB78]
 gi|302429933|gb|EFL01749.1| two component system response regulator [Streptomyces sp. SPB78]
          Length = 239

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 62/239 (25%), Gaps = 25/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++      V+ +   +  +  +               L              
Sbjct: 20  PVRVLLADDERLVREGVAAILASAPGIEVVGQASDGREALAEGARL-------------- 65

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +            A         VL          F          AG 
Sbjct: 66  -RPDVALLDVRMPVLDGLGAAEEFAR--------VLPGTAVGMLTTFSEGEYVERALAGG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D   +  G+  L   G  +         +L        +           L
Sbjct: 117 AAGFLLKSGDPYELIAGVRALAAGGAFLAPRVTR--HVLDGLGGRRLERAAGARRAVARL 174

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  ++ G ++  IA  L +S  TV  Y++ ++ +     R  A   A    +
Sbjct: 175 TPREREVLVLLAGGLSNAGIAERLRLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 233


>gi|239941310|ref|ZP_04693247.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987773|ref|ZP_04708437.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291444750|ref|ZP_06584140.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347697|gb|EFE74601.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 237

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 71/244 (29%), Gaps = 25/244 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V +++  ++    + V  +      +  +                    G     LV
Sbjct: 9   AGPVRVLVADDEPMIRAGVRAVLATDPGIEVVAEAAD---------------GHEAVELV 53

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +      D    +  +        L     +    F      +    
Sbjct: 54  RAHRPHVAVLDVRMPRTNGIDAAAEIRRT--------LPDTGVVMLTTFGEDDYILRALG 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGK 182
                +   + +   +  G+  +      +       +   L ++    + +  D    +
Sbjct: 106 AGAAGFLIKSGEPEELLAGVRAVADGAAYLSPKVAARVVAHLASSGAGALAERRDAARER 165

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  +  G ++ +IA  L +   TV  +++S++ +     R+ A   A  
Sbjct: 166 VAGLTPREREVLAHLGGGLSNGQIARRLHLVEGTVKAHVSSVLARLGVDNRAAAAVVAHE 225

Query: 243 NNIV 246
             I+
Sbjct: 226 AGIL 229


>gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium
           leguminosarum]
          Length = 241

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 74/229 (32%), Gaps = 18/229 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
             ++       +    + A                    +     V + +P   V    L
Sbjct: 14  FEQIKAAANVDAAIRILQA---EYNLDFVTYHLAQTIASKIDSPFVRTTYPDAWVSRYLL 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------MDNRYCSLTFDVARIRI 142
           +   K   ++++  E   P   +  E                   N Y     D A+ R 
Sbjct: 71  NSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSIPVADKAQRRA 130

Query: 143 GLML----LFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVECLTWI 197
            L L       +   ++R    E   +A                    L+ RE+ECL W 
Sbjct: 131 LLSLNARIPADEWTELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALSPREIECLHWT 190

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK   +I+VILGIS +T  +Y+ +   K    T S A + AV+  I+
Sbjct: 191 ALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 239


>gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 15/225 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   +        + E   G S    VR        LD ++   
Sbjct: 1   MTTILIADDHAVVREGIRGLLRLDASFEIVAETDDGTSTVEQVRAHRPDVLLLDLMMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +   +           +   T            +    +     +   +    R+ 
Sbjct: 61  GQAGVPAAIRAIRAASADTHIMVLTSSDDDALALAAIDAGADS-----FLLKSMRGERLL 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +         +       +                       LT RE+E L  ++EG 
Sbjct: 116 QAIHAAVHGEPTLHPGIAQRMI---------GALRKPPLSPFAALTARELEVLRCLAEGG 166

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  IA  LGI+  TV  ++ ++M K     R+ A+A A R  ++
Sbjct: 167 SNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGLM 211


>gi|302544316|ref|ZP_07296658.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461934|gb|EFL25027.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 268

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 12/218 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFL------LVRWDLFQEQKLDSIVSSDWPFDL 86
           L +++ ++        ++AL    G    +           + +E   D  +      D 
Sbjct: 50  LTKVLIVEDHRVVAEGLWALLAEYGDLTVVGWADSVAETVPMAKELTPDVALIDFRLPDG 109

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A +    +         +      +    +         Y   +     I   +  
Sbjct: 110 TGADAAAGIRAHDPS---CAIVILSADASDSALLAAVEAGACGYLLKSASGDEIASAIRS 166

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +I    L E   + +      +S     G+   LT RE E LT + +G  +  +
Sbjct: 167 AAEGETLIPAGTLVE---VLSRHRESARSTAEQTGRLESLTRREQEILTLMGQGLDNRAV 223

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L IS  TV  ++  I+ K   +++  A+A A    
Sbjct: 224 AEQLSISYATVRTHVRKILEKLEVRSQLEAVAKATEWG 261


>gi|254161968|ref|YP_003045076.1| response regulator [Escherichia coli B str. REL606]
 gi|253973869|gb|ACT39540.1| response regulator [Escherichia coli B str. REL606]
 gi|253978063|gb|ACT43733.1| response regulator [Escherichia coli BL21(DE3)]
          Length = 169

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 15/175 (8%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      +  R +A S              +   V    P            Y
Sbjct: 1   MVLMDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGAAGY 52

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S       +   +  ++   R I  D   ++ L            +        L+ RE
Sbjct: 53  LSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLSERE 105

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 106 LQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 160


>gi|227355895|ref|ZP_03840287.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906]
 gi|227163883|gb|EEI48785.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906]
          Length = 201

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 34/233 (14%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +  L  +      +               L                  
Sbjct: 1   MIVDDHPIMRYGLRLLLEQDKEFIVVSESGNAQEAITTAKQL---------------NPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D++R +                 L   +  +  +         N Y
Sbjct: 46  LIMMDLHLQGRSGIDIIRSLRRCGLT--------SYVLVLSISDSRNDVYAALDAGANGY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                ++  + + L        +        I L   Y                 LT RE
Sbjct: 98  LLKECELDMLLLSLRKAVVGRPVYSEKVWQYIQLRQNY-----------SDPLSALTKRE 146

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ L  ++ G  + +IA  L IS  TV  +I +I++K    +R  A    +++
Sbjct: 147 LDVLQEVAVGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAASLILIKH 199


>gi|148273247|ref|YP_001222808.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831177|emb|CAN02129.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 220

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 72/223 (32%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E   G     ++         LD  +     
Sbjct: 3   RIVLVDDQELFRGGVRVALDAQPDLEVVGEAGDGRQGLAVIDEVRPDVVLLDMRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + VR +                 +    F     + T   G  + +       A +   
Sbjct: 63  LETVRALF-DGTRDAPP-----RVIVLTTFALDRASATAIRGGASGFLLKDATPAFLAAA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++  D L ++    A  A    +          L+ RE +    ++ G ++
Sbjct: 117 IRAVHAGSAVLAPDELTQLFTSDATAAPAPPAPPAFRS----LSAREKDVFGHVARGLSN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A +  +S +TV  +++SI+ K A + R   + YA  + +V
Sbjct: 173 AEVAALEFVSESTVKTHVSSILAKLALRDRVQLVVYAHDHRLV 215


>gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 250

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 32/248 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +D +  +F      RS  L  +            +   T              + 
Sbjct: 20  VLVVEDDSRARAFFEASVQRSPRLFWLGSAGTVQEARGWLARTT-------------TIP 66

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      D++R            V+         VF      +         
Sbjct: 67  DVLLVDLGMPDGTGLDVIRDAVARFPGCEPLVV--------SVFGDEENVLASIEAGAVG 118

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMFKSYDVHWGKDF 184
           Y         I   ++ +      I       +      L +A  A    +        F
Sbjct: 119 YIHKDAAPEDIAQTIVEMKAGASPISPMIARRVLAKYRSLQSASLAPGMAASGAAPETAF 178

Query: 185 E------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +      L+ RE E LT I+ G +  EIA + G+S +TV  +I ++  K A  ++S A+ 
Sbjct: 179 DENERGLLSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVF 238

Query: 239 YAVRNNIV 246
            A R  ++
Sbjct: 239 EATRLGLL 246


>gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 26/222 (11%)

Query: 36  MIPLDCTVSWTMRMYALT-EYVG----------ASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++ ++        +  L  +  G          A  +  +    F    +D  +      
Sbjct: 7   ILLIEDFEDIRHWLAGLLRQAFGEVNVTEAATVAQGYSALDSKSFDLIVVDLNLPDGTGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++R   +     Y  V           +      +       + Y        ++   L
Sbjct: 67  DILRRAKMQGLAGYCVV--------ATAYDDDAHLLPALNAGADGYLLKDQTDEQLIRDL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +       I  LA       K           LT RE E LT+I++G +  
Sbjct: 119 HGILNGAPPLSPPVARRIMQLA-------KQTPATSLLLVPLTAREEEVLTYIAKGLSRT 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L +S +T+  ++ SI  K    +R+ A   A+R  ++
Sbjct: 172 EIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRRGLI 213


>gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        F      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFFWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNAFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 260

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 71/241 (29%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCM 90
               D       + +   + +G    +     +  +   + +V S     +   D++   
Sbjct: 12  FTAHDTLDGRIDQAFEAMQQLGFEALVYDYTPVPFDLDGELMVPSFLKLRNISDDMLEYW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT------------LPENITP------PAGMDNRYCS 132
                 +   V Q       P F              L EN  P         M      
Sbjct: 72  FDRGYFRIDPVQQVALRTSAPFFWNYNVEADTAINRYLGENTEPVARYLNERDMSTGVTV 131

Query: 133 LTFDVARIRI---GLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKD---FE 185
                        G+     K         + + GLLA        +      +      
Sbjct: 132 PVHMPRGDYATVTGIRFGANKDFERNALRYIADFGLLAHVFHETAYALFDSSERSVGKMR 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   +EG ++ EI+ I+  S  TV  ++ S  +K   K R+ A+  A    +
Sbjct: 192 LTERERECLRHSAEGLSAKEISRIIDRSVPTVVMHLNSAAKKLGAKNRTQAVVRATHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|256378051|ref|YP_003101711.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922354|gb|ACU37865.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 58/223 (26%), Gaps = 11/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L R        +D  +     
Sbjct: 4   RVLIADDQTLVRTGFRLILDAEDDIEVVAEAPDGEAAVRLARQLRPDVTLMDLRMPKVDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A                +   ++                +         +   
Sbjct: 64  IRATELLAGPGVPD------PLRVVVVTIYDLDENLHAALRAGACGFLLKDAGPRLLVEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + +      ++       +                       LT RE++    ++ G T+
Sbjct: 118 VHVAARGESLVSPQITTRL----LRDFARDGGPRTRPTTPTPLTARELDVALAVARGGTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L I+ +TV +++ S+ +K   + R+        + +V
Sbjct: 174 AEIAQRLSITLSTVKSHLTSVQQKLGARNRTEVAIRMWEDGLV 216


>gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces
           kasugaensis]
          Length = 215

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 20/225 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSD 81
             +    R++  D  V     + AL       E VG +        L  +   D ++   
Sbjct: 4   PAAPRPVRILVCDDHVVVRAGLLALLDSAPDIEVVGEAGTGEEALALAAKLAPDVVLMDL 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  +A + +         P  L    + T  +           Y         + 
Sbjct: 64  QLGTGMDGVATTRRLTAGPG-ATPHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELF 122

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +         +          +A+      +S          LT RE + L  +++G 
Sbjct: 123 SAIQAAAQGRTTLS-------APVASRVMARMRSPRPS------LTDRERDILAQLAQGL 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA  L IS  TV  ++  I  K    TR+GA+A A    ++
Sbjct: 170 GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 214


>gi|229495080|ref|ZP_04388826.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
 gi|3319301|gb|AAC26219.1| CprR [Rhodococcus sp. NO1-1]
 gi|229318011|gb|EEN83886.1| transcriptional regulator, LuxR family [Rhodococcus erythropolis
           SK121]
          Length = 212

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 58/235 (24%), Gaps = 31/235 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I L  + E     +  L    +    +                           V   
Sbjct: 3   TRIFLVDDHEIVRRGLFDLLGGVEDFVVVGEAASVGE---------------ALAAVPQS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    +      +       
Sbjct: 48  NADVAVLDVRLPDGNGVELCRELRSMLPDLRC--------LMLTSYADDEALLDAIMAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   G ++       +              D       EL+
Sbjct: 100 SGFVLKQILGTDLVAAVRTVGRGGSLLDSRATEAL--------MQRIRSDRTADPLAELS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +E      I EG T+ EI   L ++  TV NY+  ++ K   + R+ A   A  
Sbjct: 152 DQERAVFDLIGEGLTNREIGARLFLAEKTVKNYVTRLLSKLGMQRRTQAAVLATE 206


>gi|148544128|ref|YP_001271498.1| two component LuxR family transcriptional regulator [Lactobacillus
           reuteri DSM 20016]
 gi|148531162|gb|ABQ83161.1| two component transcriptional regulator, LuxR family [Lactobacillus
           reuteri DSM 20016]
          Length = 217

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 35/243 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++          V +L  + D    +                 E  G    L      
Sbjct: 3   RVLVADNYPIIRMAVKNLVEQLDNFKVIAE---------------EATGIDASLRAEQGD 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAG 125
                +D  +              +       + +        +F +             
Sbjct: 48  IDIIIMDLAMP----------PGENGLITIKRIHEHFPNTKIIIFSSRNEPQYINQAIYN 97

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KD 183
             N Y   +     +   L       + +         ++      + K    H+     
Sbjct: 98  GANSYILKSSSPKELVHALRHAINGEKYLD-----NNIMVTKKDLLVIKGGSPHFDLGNY 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +  + YAV++
Sbjct: 153 VALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKH 212

Query: 244 NIV 246
            +V
Sbjct: 213 RLV 215


>gi|333024002|ref|ZP_08452066.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332743854|gb|EGJ74295.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 67/265 (25%), Gaps = 52/265 (19%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
                     + +  ++ L   +             G     LV         +D  +  
Sbjct: 1   MVADDQSVVREGIVMLLGLLPGIEVVGSAR-----DGEEAVRLVGELAPDVVLMDLRMPR 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 +    +    +           Y +     A I
Sbjct: 56  CDGVEATRRIRAEHPGTQ--------VVVLTTYADDQDLFPALRAGARGYLTKDAGGAEI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFE-------------- 185
              +  +      +       +   +A       ++      +  E              
Sbjct: 108 VRAIEDVLSGEAGLAPGIQRRLLDRIAGETPADPQAPPSSTVRPGEEGARGRAREATSGR 167

Query: 186 ------------------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                                   LT RE E L  I++G ++ +IA  L +S  TV  +I
Sbjct: 168 AEVRPPGSGGAVPPGPGGAVPPDGLTAREAEVLALIAQGLSNADIARALHVSAATVKTHI 227

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  K   + R+ A+ YA  + IV
Sbjct: 228 NNLFAKAGLRDRAQAVRYAYLHGIV 252


>gi|327327678|gb|EGE69454.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 223

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L    S    M  + +   G     LV   L     +D  +     
Sbjct: 4   RLVVTDDHPIMRQALAGYFSRVEEMEVVGQATNGREAVELVDQLLPDVVLMDLKMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F      +         Y     +   +  G
Sbjct: 64  LTATRMIVSRH--------PSVRVVALTTFARRDIVVEAILAGAAGYLLKESEPEAVIAG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    +  + +                 +L+  + + L  ++EG ++
Sbjct: 116 VRAVMAGQVTVSPEIARGVVEVFS-ARPCGGGSHQIDLTPVKLSDADDDVLKLLAEGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S + V   +  + +K   ++R   +  A    +V
Sbjct: 175 AAIADELCLSESAVKQRLGHLAKKLGVRSRLEVLVRACELGLV 217


>gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 272

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 65/245 (26%), Gaps = 34/245 (13%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +   +   +   R++     +G    +     +              +  + P D+    
Sbjct: 26  LQARETLNACLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMHNVW 85

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------------------MDN 128
                 +   V QR T    P   +                                M  
Sbjct: 86  CEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGHQHRQVTRYLCDSDMGT 145

Query: 129 RYCSLTFDVAR----IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                              +     +   +   +L    LLA       +       +  
Sbjct: 146 GVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRC 205

Query: 185 E---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+   +
Sbjct: 206 HHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGM 265

Query: 242 RNNIV 246
              ++
Sbjct: 266 HYRLL 270


>gi|307129346|ref|YP_003881362.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Dickeya dadantii 3937]
 gi|306526875|gb|ADM96805.1| DNA-binding response regulator in two-component regulatory system
           wtih UhpB [Dickeya dadantii 3937]
          Length = 196

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 58/222 (26%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITLALIDDHLIVRSGFAQLLGLEPDMQVVGEFGS-----GREALAGLPGRGAQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +                 +   V  +              + S     
Sbjct: 57  MPDLSGLELLAQLPT-----------GMAVIMLSVHDSPALIEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVRTVAGGGCYLTPDIALKLA----------------SGRRDPLTRRERQVAEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G     IA  LG+S  TV+ + A++M K            
Sbjct: 150 AQGMVVKAIAAELGLSPKTVHVHRANLMEKLGVNNDVELARR 191


>gi|258404949|ref|YP_003197691.1| two component transcriptional regulator, LuxR family
           [Desulfohalobium retbaense DSM 5692]
 gi|257797176|gb|ACV68113.1| two component transcriptional regulator, LuxR family
           [Desulfohalobium retbaense DSM 5692]
          Length = 223

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 16/233 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ ++  R           +    ++  D  +             G     L        
Sbjct: 1   MSTQEPIRILLAEDHVVSREGFRVLLEQDPQLRIVCEANN-----GEEAVALYEAFRPDI 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + ++ +   +         +   +       L +           + 
Sbjct: 56  ALLDLAMPEIDGLEAIKQIKSLD--------AQSRIIILTGDEDLGQVWVALDFGACGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S   D   +R  + L      +     L     +       +        +  ELT RE 
Sbjct: 108 SKEIDHHALRWQIKLAARGFPVFSPGILECFIQVYK---EKYAPLKQVSQELMELTKRER 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L +I    +S +I   +G+S  TV  +  + +RK    +R    + A    
Sbjct: 165 EVLVYILRRYSSRQIGANMGLSSRTVEKHWRNCLRKLGCTSREELFSLATARG 217


>gi|226365866|ref|YP_002783649.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226244356|dbj|BAH54704.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 211

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 60/218 (27%), Gaps = 13/218 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L      T  +  + E   G     LV         +D  +     
Sbjct: 3   RVLIVDDQRLVRAGLRMLCEATDDIEVVGEASNGLDAVRLVAECSPDVILMDLRMPGLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A S              L    F          A     +     D A +   
Sbjct: 63  IAATRQIASSHS--------AVKVLVLTTFDDDDHFYPALAAGAAGFLVKDTDPAELLNA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        I     L  +   A          D        LTGRE E LT + EG  +
Sbjct: 115 IRRTAAGDTIFTPALLRRLVDRAL----DTAPSDERSSTSVALTGREREVLTLVGEGLGN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            EIA  L I   TV  ++A++M KT    R     +A 
Sbjct: 171 QEIAARLHIGVTTVKTHVANLMEKTGCDNRVRLAVFAH 208


>gi|170738965|ref|YP_001767620.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168193239|gb|ACA15186.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 221

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 30/239 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +  IV+  +       +          AR++      + T  +    E           
Sbjct: 3   SETTIVVADDHPLFRGALRGAVGGILPEARIVEASGLDALTALLEREAE----------- 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +     F  +  +          V+         V     +       
Sbjct: 52  ---VDLILLDLTMPGVQGFSGLIYLRAQHPAI--PVVIVSANEDPVVIRRALD------F 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   + D+  I   +  +   G     D            A+  K       +   
Sbjct: 101 GAAGFIPKSLDIDEIGGAVRQVLAGGTWAPPDIA--------LSASEDKETAELMRRLAT 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  + R  
Sbjct: 153 LTPQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIASSRIG 211


>gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 201

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + +     +S L      +  +                    GA    LVR +
Sbjct: 2   IRVVIAEDQKMVLGALSALLEMEGDIQVVGRAPD---------------GAVALDLVRAE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + +    D+   +                 L    F              
Sbjct: 47  KPDVLISDIEMPNLTGIDVAARLKADG--------AGTRVLIVTTFGRPGYLRRAMDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       + +   +  +   GR I  +       L+    +              LT
Sbjct: 99  KGYLLKDGPSSVLAAAVRTIAAGGRAIAPE-------LSEAVWDAEPD---------PLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EG+++ +IA +L +S  TV NY++   +K     R  A   A  N  +
Sbjct: 143 DREREILRLAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEAGRIARSNGWL 201


>gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24]
 gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24]
 gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)]
 gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24]
          Length = 217

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                            S    V  +   +  +     II  +   E           + 
Sbjct: 82  NTHRAFEALRVGVRAVLSAETSVEELVHVIRTITEVNAIIAPEEAQEALT-------RYW 134

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     ELT RE E L  +++GKT+ E+A  L +S  TV +++  I+RK    TR+
Sbjct: 135 RSKAPKNLRPELTPRETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRILRKLGAATRA 194

Query: 235 GAIAYAVRNNIV 246
            A+A A  + ++
Sbjct: 195 QAVAIAYESGLL 206


>gi|24306039|gb|AAN52499.1| SpnR [Serratia marcescens]
          Length = 247

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 29/229 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +       G   +        ++   D ++ S +  + V     +       V+  
Sbjct: 15  LREYIDRKLSSFGRLEYAYTVV--SKKNPSDVLIVSTYSDEWVELYRTNNFQLTDPVILT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP--K 150
                 P                   ++     + N +  +  D       L ++    +
Sbjct: 73  AFRRTSPFAWDENITLMSDLKFTKIFSLAKHYNIVNGFTFVLHDHMNNLTLLSVIIANNE 132

Query: 151 GRIILRDRLWEIGLLAAYQAN-------------MFKSYDVHWGKDFELTGREVECLTWI 197
              +     +E G +     +               +            T RE E L W 
Sbjct: 133 QGELEARLTFERGAIQILLIDINEQMYCFAGTSSSGRQRHHMDRVKPIFTPRENEVLYWS 192

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S GKT  +IA I GIS + V  ++ +I+ K        AI   V   ++
Sbjct: 193 SMGKTYGDIAAIAGISISMVKFHMGNIVSKLGVSNARQAIRLGVELELI 241


>gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
 gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein
           [Erythrobacter sp. NAP1]
          Length = 236

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 66/231 (28%), Gaps = 16/231 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSIVSSDWPFDLVRC 89
               +  L         +       GA+         F +Q  +  ++ +  +  + +  
Sbjct: 4   HFDHVETLVEISDVLTYVRDQAIKAGAARMSYHVTPAFDQQTSRTAAVYAHGFSDEWMAL 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFD 136
            A  E      +  R  +    +                          + + +    + 
Sbjct: 64  YAKEEFRLTDPIPGRVMQFGSLMTWQDAMSWQHNTPDQEAYFAKMKEYDLIHGFGIPLYG 123

Query: 137 VARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                             +  + +  I  L+            H      L+ REVE LT
Sbjct: 124 RNARDAYASFDFLKHVDDVAPESIGMIRSLSQVAHQRVVILVEHKLDAPALSEREVEVLT 183

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           W + GK+   IA IL IS +T   Y   I  K     R GA+  A+R  +V
Sbjct: 184 WAARGKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGLV 234


>gi|307727417|ref|YP_003910630.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587942|gb|ADN61339.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 220

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 65/243 (26%), Gaps = 32/243 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                ++++L  +          L   +  +              R  AL          
Sbjct: 1   MTAANISVLLVDDHAVVREGYRRLLELNADVHVCGEAADAAEAYQRFCAL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      + +R M   E        Q    L   V          
Sbjct: 51  -----RPDVVVMDVSLPGASGIEAMRRMLARE--------QDARVLIFSVHEEAIFVRRA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y +       +   + ++  +   +  D    + L         ++       
Sbjct: 98  LDAGALGYVTKASAPDVLVEAVRIVARRASYLSPDISQALAL---------RNAFSEGPP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE E L  + +G T   IA  LG+S+ TV N+ + I +K            A R
Sbjct: 149 GRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASR 208

Query: 243 NNI 245
             +
Sbjct: 209 LGL 211


>gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 218

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                +  + ++  GL  +      + R     +  L  Y      +Y +   ++ ELT 
Sbjct: 106 GIFGPSDSMDKLCQGLKAIIDGDNWLSR---RLLEQLLTYYKGKESTYSIEPAEEVELTR 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           REV+ L  + +G ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 163 REVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATSWAKRN 217


>gi|182440739|ref|YP_001828458.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326781413|ref|ZP_08240678.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178469255|dbj|BAG23775.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326661746|gb|EGE46592.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 65/242 (26%), Gaps = 26/242 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E + V +V+  +D+     +  +      L  +                    G + 
Sbjct: 1   MDSERKPVRVVIVDDDQLVRMALRLVIDGEPDLTVVAEAAD---------------GNAA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            ++V         +D  +         R +                 L    F +    +
Sbjct: 46  VIVVDEQRPDVVLMDVRMPGLDGLGATREILARAAPP--------RVLMLTTFDSDDLVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYD 177
                    +        RI   +  +     ++       +   A           +  
Sbjct: 98  GALRAGALGFVLKDTPPQRILDAVRAVADGSPVLSPAATARVIAAATGPLSSHARDSTRR 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE E    I++G  + EIA  L IS  TV  +  S+  K A + R    
Sbjct: 158 AARERLSALTEREHETARAIADGLGNPEIAQRLNISVATVKAHTGSLFSKLAVQNRVQIA 217

Query: 238 AY 239
             
Sbjct: 218 LL 219


>gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 223

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 12/225 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D   R+  +   +  +     +T   G     L+          D  +     + 
Sbjct: 6   LIADDDPGIRLA-VKDYLELSGY-SVITAQNGQEALSLLETYRPHLLVSDIKMPQKDGYT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +            +    +F     T  E I       + Y    F++  ++  + 
Sbjct: 64  LVRHLRQL------PEFRLLPVVFLTERGTKEERIQGYEVGCDVYLPKPFEMDELKAVIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGK 201
            L  K +II  +  +  G             +            LT RE + L  ++ G 
Sbjct: 118 NLVEKTQIIQSEWRFSQGESQPKPTLEPSQKEAIAVPSLLNSLHLTSRESQVLNLLARGL 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI   L +S  TV  Y++S++RKT T  R+  + +A+ ++++
Sbjct: 178 SNGEIGQNLHLSSRTVEKYVSSLLRKTETNNRAELVRFALDHHLI 222


>gi|171911132|ref|ZP_02926602.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 235

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+++ +FV       D L ++  ++            T          +         +D
Sbjct: 17  DKKKIAFVDDHTMLRDGLQKL--VESQPDLCCY---WTASNTQDALQQLEQGKPDMLAVD 71

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +L++            +L                           Y     
Sbjct: 72  ISLPGRNGLELIK--DALALHPDLPILVISM------HDESFYAQRVLKAGARGYVMKDA 123

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +   +   +  +   GR +      +I + A       +  D        L+ RE E   
Sbjct: 124 ESTTLLQAIRNVLEGGRYVSPAMSAQI-MEAFSGRGAARPVDGVQ----RLSDREFEVFQ 178

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ISEGK++ +I   L IS  TV  + A I  K   +  +  + YAVR
Sbjct: 179 LISEGKSTQQIGDALNISVKTVEVHRAHIREKLKLEDGASVLRYAVR 225


>gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 222

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 12/219 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYV--GASHFLLVRWD----LFQEQKLDSIVSSDWPFDLVRC 89
           ++ L+        + AL   V  G++     R          Q+ D  +      D    
Sbjct: 4   ILLLEDLPEIRAYLRALVVQVFPGSTVVESARIHDALQQVSAQRFDLAMVDLGLPDGSGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             +          Q        +                 Y        ++   L  +  
Sbjct: 64  KVVQALRDQQPDAQSVVV---TIHDDDDHLFPALQAGAYGYLLKEQPREQLMEHLQRISQ 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---KDFELTGREVECLTWISEGKTSDEI 206
               +       +    + QAN  ++Y         + +LT RE E L  +++G T  EI
Sbjct: 121 GEPPLSPSIARRMISYFSAQANRPQAYQPTTDQLMPNVQLTEREREVLLRVAKGFTLPEI 180

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            V LG+SR+T+ +Y+  I RK    +R+ A   A R  +
Sbjct: 181 GVQLGLSRHTIADYVKQIYRKLNVSSRAEAALEAQRLGL 219


>gi|91777662|ref|YP_552870.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|296161446|ref|ZP_06844252.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|91690322|gb|ABE33520.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
 gi|295888261|gb|EFG68073.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 220

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 64/243 (26%), Gaps = 32/243 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                ++++L  +          L   +  +              R  AL          
Sbjct: 1   MTAGDISVLLVDDHAVVREGYRRLLELNADVHVCGEAADAAQAYQRFCAL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      + +R M   E D           L   V          
Sbjct: 51  -----RPDVVVMDVSLPGASGIEAMRRMLAREPD--------ARVLIFSVHEEAIFVRRA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y +       +   +  +  +   +  D    + L         ++       
Sbjct: 98  LDAGALGYVTKASAPDVLVEAVRTIARRAGYLSPDISQALAL---------RNAFSEGPP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE E L  + +G T   IA  LG+S+ TV N+ + I +K            A R
Sbjct: 149 GRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASR 208

Query: 243 NNI 245
             +
Sbjct: 209 LGL 211


>gi|270262435|ref|ZP_06190706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043119|gb|EFA16212.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 206

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFDLVRC 89
           +D   S    +  L    G +       +               LD  + S   F +   
Sbjct: 8   VDDDHSVRQSIVRLLNSAGYNAVDFDCAEAFLTHAFPAIPGCIILDMRMPSGDGFAVTDA 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S         +    +F   + T+P ++       + + +       +   +     
Sbjct: 68  LKASG--------REMPVIFLTGYGTIPLSVQAMKAGAHEFLTKPVASDDLLKAV----- 114

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                      E   LAA  ++  + +     +   LT RE E L    +G  + +IA  
Sbjct: 115 ----------QEALNLAAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQIAAE 164

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LG+S  TV  +   +M K   ++ +  + +A R N+
Sbjct: 165 LGVSEITVKVHRRRVMDKMQVRSLADLVRHAERLNL 200


>gi|148252434|ref|YP_001237019.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404607|gb|ABQ33113.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 30/233 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+  +     + +    T     A +         T  +   +E               
Sbjct: 8   LVIADDHPLFRNALRQAVTSVLAEAVVDEAGSFEDLTTLLEKDSE--------------V 53

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +     F  +     ++      V+   ++    +  +L           + 
Sbjct: 54  DLVLLDLTMPGISGFSGL-IYLRAQYPAIPVVIVSASDDGATIRRSLDF-------GASG 105

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    F V  +R  +  +      +  D            A           +   LT +
Sbjct: 106 FIPKRFGVDTLRDAITKVMDGDVWVPPDT--------DLAAGADPEMTRLRDRLVTLTPQ 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +V  L  +S+G  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 158 QVRVLMMLSQGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 210


>gi|28900819|ref|NP_800474.1| response regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879186|ref|ZP_05891541.1| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           AN-5034]
 gi|308125466|ref|ZP_05775488.2| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           K5030]
 gi|28809265|dbj|BAC62307.1| response regulator (repressor) in two-component regulatory system
           with UhpB (LuxR/UhpA family) [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308094069|gb|EFO43764.1| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           AN-5034]
 gi|308115245|gb|EFO52785.1| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           K5030]
 gi|328470722|gb|EGF41633.1| response regulator [Vibrio parahaemolyticus 10329]
          Length = 202

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 29/221 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            + V          A+++ L+  ++      ++ E   G                LD  +
Sbjct: 4   VALVDDHVIVRSGFAQLLNLESDITVVGEFGSVAEARTGLPAV------HPHVVILDISM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   +L+  +                     V  +              Y S      
Sbjct: 58  PDESGLNLLSEI---------PTGIACV--MLSVHDSPAMVEKSLKLGAKGYLSKRCSPD 106

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +      G  +  D            A    +         +LT RE E    ++
Sbjct: 107 ELIQAVRTSASGGCYLTSD-----------IAIKLATPSDKAASLCQLTRRENEVCQLLA 155

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +G     +A  LG+S  TV+ + A+ + K   K        
Sbjct: 156 KGLDVKSVAAELGLSHKTVHVHRANAIDKLGVKNNVELAKL 196


>gi|237799435|ref|ZP_04587896.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022291|gb|EGI02348.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 220

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 73/238 (30%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +                L +   
Sbjct: 4   NLLLVDDHSLIRAGVRALVADIPGYAVVGEASDGAQLSS---------------LAQCLQ 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + +    D +  +          V  +   L   +       +        
Sbjct: 49  PDIVLLDIWMKNVDGLDALEQLLS--------VQPQCKVLVLSMHTDTAMIMRALELGAC 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A +   L  L    R +       +   A       ++ +     +  LT 
Sbjct: 101 GYLLKDTTAAELEQALDALRSGERYLSPAIAHTVVKRATRGTRSDRAIEAKERHN--LTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ E+A  LG+S  TV  + + IM++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREMASGLGLSIKTVETHRSQIMKRLQIFDVAGLVLFCVRERII 216


>gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae
           TIGR4]
 gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae]
 gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195]
 gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 199

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L           A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLML--QPDVESVFQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y     ++
Sbjct: 56  MPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERNI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +  + +                     LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEVVMM-----------------HPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|332529938|ref|ZP_08405889.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332040635|gb|EGI77010.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 214

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 32/235 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  + +    +  +           ++  + + +           
Sbjct: 5   LRILIGDDHRIVREGLKQILSDDPGVQVVAEAATGPDVLEQVQVMADRL----------- 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+++ +  +        L        P                
Sbjct: 54  --DLVLLDIALPGRDGLDVLQQLRTAH-----PRLPVLMLSTYP---ERQYAARCIKLGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + + D   +   +      G  +                          G    L+
Sbjct: 104 AGYLNKSADPDVMLAAVRKAAAGGVFVTPAAAEA-----------LAGAVAGRGGAEALS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE +    + +G++  EI   LG++ NTV+ Y A I+ KT TK       YA R
Sbjct: 153 HREHQVFRLLIQGRSVSEIGAQLGLAPNTVSTYRARILEKTGTKNDVELALYAER 207


>gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 210

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 69/218 (31%), Gaps = 14/218 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVSSDWPFDLVR 88
             R+   D  +     + AL +  G                L      +V SD     + 
Sbjct: 3   ARRIALADDQILVRAGLRALLQQQGVEVVCEADDGQSLLDALVINTVDVVLSDIRMPGLD 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +   ++ +      R   L    F      +         +         +R  +  + 
Sbjct: 63  GIQALQQLRD--RGDRTPVLLLTTFDDSDLLLRATEAGAQGFLLKDAAPEDLREAIERVA 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++          ++         +          + REV  L  ++ G ++ EIA 
Sbjct: 121 SGETLLQP--------VSTDPVRARYQFRDQQPPRETFSEREVAILRLLAGGYSNKEIAR 172

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 173 TLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|296451265|ref|ZP_06893005.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296880383|ref|ZP_06904346.1| DNA-binding response regulator [Clostridium difficile NAP07]
 gi|296259871|gb|EFH06726.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296428624|gb|EFH14508.1| DNA-binding response regulator [Clostridium difficile NAP07]
          Length = 218

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 14/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       + +      +D  +         R +          +L          F+  
Sbjct: 41  GYEALEFCKTNDVDIVLMDIRMKVCDGVLGTRLIKEYNNSITLLIL--------TTFNDD 92

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y         +  G+   F    ++ +    +I              
Sbjct: 93  EYIKDAMKFGASGYLLKDSSDEVLHEGIRSSFFGNIVLDKSVAEKIMT-----PEKMIEQ 147

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +  +   + LT +E+  +  I+ G  + EI+  L +S  T+ N I +I+ K   + R+  
Sbjct: 148 EHLYD-MYNLTEKEISIIRLIANGLNNKEISKELFLSEGTIKNNITNILGKLELRDRTQL 206

Query: 237 IAYAVRNNIV 246
             +A +N IV
Sbjct: 207 AIFAFKNKIV 216


>gi|259418455|ref|ZP_05742373.1| transcriptional regulatory protein DegU [Silicibacter sp.
           TrichCH4B]
 gi|259345850|gb|EEW57694.1| transcriptional regulatory protein DegU [Silicibacter sp.
           TrichCH4B]
          Length = 212

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 35/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V I++  +         H  +    +      +        +  + +       LL   
Sbjct: 8   PVRILVADDHAMVLEMFEHFLSNLPNV----TAETAADLDEALAKIEQGGAFDLVLL--- 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +        +       + K   V    +     V   +       +  
Sbjct: 61  --------DLNMPGMNGTSGLSKAIALNEGK--PVAILTSNPSQKVVSDIL------SLG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                  T  +  +   +  +   GR I  D +              +           L
Sbjct: 105 GAGLILKTTSLKDLGNEVNFIAAGGRYIPVDLI------------ETQRVKTQDTTSTPL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE   L  ++EGK + EI   L ++  TV  ++ SI  K     R+ A+  A   N++
Sbjct: 153 SDRETTVLNLLAEGKPNKEIGSDLNLAEPTVKMHVKSICTKLGASNRTQAVIVARDLNLI 212


>gi|184153602|ref|YP_001841943.1| two component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227364675|ref|ZP_03848730.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325682211|ref|ZP_08161728.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|183224946|dbj|BAG25463.1| two component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227070285|gb|EEI08653.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978050|gb|EGC15000.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 217

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+++  +     S +S+L         +                    G   ++ V    
Sbjct: 3   NVLVADDHAIVRSGISYLVDLQPNFTVVDGTAS---------------GTDTYIRVEQGG 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +    P      +        +  ++    +   +           A    
Sbjct: 48  IDILIMDLSM----PPGENGLITTRRIHDKFPKVKI---IILSMHEEQEYINKAMANGAM 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            Y   +   + I  GL  +    + +       I +       +  S ++   K +  L+
Sbjct: 101 SYILKSSPDSEIVNGLKHVINGEKYLD----ANIIVSKKDIKEINASGNILKLKGYNGLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    I+ G ++ EI+  + IS  TV  + A+I RK     R   + YA+ ++++
Sbjct: 157 KREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHHLI 215


>gi|144897377|emb|CAM74241.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 208

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + ++L  +       V  +     D    ++     V     + A  E            
Sbjct: 1   MRVLLADDHALFREGVRLVLENLVDGPLEVVEAGDFVQAVAALRAGGE------------ 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F    +D  +     FD +  +  +  + +  V+            +  +        
Sbjct: 49  --FDVGLVDLNMPGMDGFDGIEAVCRAAPNMHLVVI--------SASESPSDVRRALDAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y + T   + +   +  +      +               A+              L
Sbjct: 99  AQGYIAKTSSSSSMLDAIRQVLSGDTYLSPRL---------EVASANADVAGRDQARNVL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T R+ + L  + +GK++ EIA  L ++  TV  ++ +I+R    + R+ A   A +   
Sbjct: 150 TPRQRDVLAMLRQGKSNKEIARDLNLAEITVKLHVTAILRALGVENRTQAAILAAKIGY 208


>gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 277

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 65/241 (26%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +       S   R++     +G    +     +              +  + P D+    
Sbjct: 35  LQASQTVNSCLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVW 94

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT---LPENITPPA---------------GMDNRYCS 132
                 ++  V QR T    P   +     +                     GM      
Sbjct: 95  CEHGYYQHDPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTV 154

Query: 133 LTFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                    +   +L    LLA       +       +      
Sbjct: 155 PLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIP 214

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 215 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 274

Query: 246 V 246
           +
Sbjct: 275 L 275


>gi|327393400|dbj|BAK10822.1| response regulator UvrY [Pantoea ananatis AJ13355]
          Length = 167

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 15/172 (8%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +     D           +   +    P            Y S 
Sbjct: 1   MDMNMPGIGGLEATRKIVRYNPDI--------KIIMLTIHTENPLPAKVMQAGAAGYLSK 52

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +  +    R I  D   ++ L                     L+ RE++ 
Sbjct: 53  GAAPQEVVNAIRSVNAGQRYIASDIAQQMALSQI-------EPQKAESPFSCLSERELQI 105

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  I++G+   EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 106 MLMITKGQKVTEISEQLNLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGL 157


>gi|296161825|ref|ZP_06844627.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295887989|gb|EFG67805.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 216

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            +         D L  ++                   G S   L R        L   + 
Sbjct: 4   VAICDAHGVTRDGLWALLRSTGEFEIVGEA-----ADGPSTLALARTTDAVVLTLGLSMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L+  +           L+       P        +       + Y +       
Sbjct: 59  GIHGLNLIPLIKAEN-----PSLRVLVVTRHP---EQAYAVRAFKAGASGYVTKATPGTA 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
               +  +   G  +          +A   A  F   D        L+ RE+E    I+ 
Sbjct: 111 FIAAVRKVASGGIYVSLA-------MADQIAKGFDEVDTSL-PHQSLSTRELEIFLRIAS 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +   IA  L +S  TV+ +   I+ KT     +  + YA+R  ++
Sbjct: 163 GDSVTVIAEHLNLSAKTVSTHKTRILEKTGLANDAALVRYALRTGLL 209


>gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 226

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 11/216 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL-----DSIVSSDWPFDLVRCM 90
           ++ ++   +   R+ A     G              + L     D IV+     D +   
Sbjct: 15  VLLVEDERAIRERLAAALSEPGDCAVSTAATLAEGRRLLEARAFDLIVADIRLPDGLAID 74

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L+E  + Y  ++           T+       A   + Y         +    + +   
Sbjct: 75  LLAEARERYPQVEILVISVLGDETTIL---AAIAAGASGYILKDALPEDVHATALEVLAG 131

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  I          +         +      +   LT RE++ L  I++G T +EIA  L
Sbjct: 132 GSPISPSIAR---FIVKRARAESGARPAPVQEAPHLTPRELDILWGIAKGLTYNEIADRL 188

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+SR+TV ++I +I RK    TR  A+  AV+  ++
Sbjct: 189 GLSRHTVPSHIKAIYRKLQVATRGEAVYEAVQCGLI 224


>gi|182438634|ref|YP_001826353.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467150|dbj|BAG21670.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 272

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + V  +      +  +                    G     LVR  
Sbjct: 45  IRVLVADDEPMIRAGVRAVLATDPGIEVVAEAAD---------------GREAVELVRAH 89

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D    +  +        L     +    F      +       
Sbjct: 90  RPHVAVLDVRMPGTNGLDAAAEIRRT--------LPATGVVMLTTFGEDDYILRALGCGA 141

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             +   + +   +  G+  +      +       +   L +     +    D    +   
Sbjct: 142 AGFLIKSGEPEELVAGVRAVAEGAAYLSPKVAARVVAHLASTGAGALAGRRDAARDRVAG 201

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ +  G ++ +IA  L +   TV  +++S++ +     R+ A   A    I
Sbjct: 202 LTPREREVLSHLGGGLSNGQIARRLHLVEGTVKAHVSSVLARLGVDNRAAAAVVAHEAGI 261

Query: 246 V 246
           +
Sbjct: 262 L 262


>gi|94971093|ref|YP_593141.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553143|gb|ABF43067.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 233

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 13/213 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTE----YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R++  D           L E     VG +           E K D I++      L    
Sbjct: 25  RILLADDHNLVAELCKKLLETEYEVVGIATDGRALVRAAVELKPDVIIADVGMPLLNGLD 84

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           A  +  +    ++       P                + Y   T   + +   +  +   
Sbjct: 85  AAQQVKQKLPTVKIIFLTMNP---DPDIAAEAFRRGASAYLVKTSAASEVVASVREVLRG 141

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
              +      E+  L+ +Q            +  +LT R+ E L  ++EGK   E+A IL
Sbjct: 142 KTYVSPTIPREMIDLSLWQHKKL------VDETHKLTDRQREVLQLLAEGKGMKEVAAIL 195

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++  TV  +   IM    TK  +  + YAVRN
Sbjct: 196 NMTTRTVAFHKYRIMEVLGTKNNADLVKYAVRN 228


>gi|33601716|ref|NP_889276.1| response regulatory protein [Bordetella bronchiseptica RB50]
 gi|33576153|emb|CAE33232.1| response regulatory protein [Bordetella bronchiseptica RB50]
          Length = 224

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 32/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +D      V         ++ +            +                  
Sbjct: 13  LRIAIVEDDPAFRHAVVAAIAHEPGMSVLAQAQTCAQARAMLQ---------------GP 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D++R           +++         +F      +       
Sbjct: 58  PADVLLVDLGLPDGSGIDVIR--QARRLWDDCDIM------VNTMFGDEAHVMRSIEAGA 109

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFE 185
             Y     + A I   +  L   G  I         L+A    +  +             
Sbjct: 110 CGYLLKDSEPAGIVRDIRALRDGGSPINP-------LIARQLLDRLRQGLPAAAPPAAMA 162

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE + L  I+ G T DEIA  L +SR+TV  ++  I RK    ++  AI  A 
Sbjct: 163 LSPREHQVLERITLGYTYDEIARDLEVSRHTVQTFVRRIYRKLQVHSKVDAINAAR 218


>gi|326382928|ref|ZP_08204618.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198518|gb|EGD55702.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 217

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 73/243 (30%), Gaps = 31/243 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   +++ + L  + E     +  L + ++ L  +          + + A +       
Sbjct: 1   MSAPTRRIRVFLVDDHELVRRGLRDLLSTAEDLEVVGEAATVAEAGVGIAATS------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      +L R +  S+   +         L    +      +
Sbjct: 54  --------PDVAVLDVRLPDGNGVELCRAVRSSQPSVHC--------LMLTSYADDDALL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +         +   +  +   G ++       +                  
Sbjct: 98  AAVLAGASGFVLKQILGHNLIAAVRTVGAGGSLLDDRSTAALLARL--------RDGEPS 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LTG+E E  T I +G T+ +IA  + ++  T+ NY++ I+ K   + R+     A
Sbjct: 150 DPLARLTGQEREVFTLIGQGMTNRQIADRMFLAEKTIKNYVSRILSKLDMQRRTQVAVLA 209

Query: 241 VRN 243
              
Sbjct: 210 TEL 212


>gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143]
 gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143]
          Length = 199

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++           + A     G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTF--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +   + +    V+          F              + Y      +A + 
Sbjct: 60  TGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAIKAGVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|254820486|ref|ZP_05225487.1| NarL_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 217

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +       V    + S  +  +   +                G++   L++  
Sbjct: 10  VRVVVADDHPLFREGVVRALSSSGSVNVVAEAED---------------GSAALELIKVH 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +                 L                   
Sbjct: 55  EPDVALLDYRMPGMDGAQVAAAVRTQGL--------ATRVLLISAHDESAIVYQALQQGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         I   ++       ++    +  +      +A               L+
Sbjct: 107 AGFVLKDSTRGEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPSAPV---------LS 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  ++
Sbjct: 158 AREREVLNRIARGQSIPTIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216


>gi|256824283|ref|YP_003148243.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687676|gb|ACV05478.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 223

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 14/233 (6%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+   +   V   P     L  ++     +    +  +  E +                 
Sbjct: 4   RDAPLQVVLVDDHPVVRAGLTAVLSATGDIEVAAQAGSHGEALALLTGAGGPLGGVAVDV 63

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +   +      D    +                 L         + +       + Y   
Sbjct: 64  VVVDLHLGSGPDGAALIQDLRGLGVA-----TPMLVLTAHDDGDDVLQAVEAGASGYLLK 118

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +R G+        ++       +   A                   +T RE++ 
Sbjct: 119 DAPPTSLRDGVARAAAGETVLAPAAAAHLVTGARATTAEAAP---------RVTDRELQV 169

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G+T+ ++A  LGI   TV  ++  +        R+ A+  A    ++
Sbjct: 170 LRGVARGQTNRQVARELGIGEATVKTHLVHVFTTLGVTNRTAAVGRARELGLL 222


>gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 207

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 24/224 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV-SSDW 82
            +    D       L   +     +  + E   G     +          +D  +     
Sbjct: 5   RILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVAMAAKLRPAVVLMDLQLGEGID 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +A  E             L    + T  +           Y         +  
Sbjct: 65  GVEATRRIAALEVH----------VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +          +A    +  +           LT RE++ L  ++ G  
Sbjct: 115 AIRAAAQGRTALS-------APVATRVMDRMRGGGRPS-----LTERELDILGQLARGLG 162

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV  ++  I  K    TR+GA++ A    ++
Sbjct: 163 NREIARALFISEATVKTHLGRIYAKLGVDTRAGAVSVAKEQRLL 206


>gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334]
          Length = 199

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++ L         + A     G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAVLDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +     +    V+          F              + Y     ++A + 
Sbjct: 60  TGLEVLEWIRAENLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERNIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 KTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGF 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|82775855|ref|YP_402202.1| putative response regulator [Shigella dysenteriae Sd197]
 gi|309785989|ref|ZP_07680618.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
 gi|81240003|gb|ABB60713.1| putative response regulator [Shigella dysenteriae Sd197]
 gi|308926100|gb|EFP71578.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617]
          Length = 209

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 72/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  +    +  +  +         +  D      +D  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAW-----SALIRDDVNVAVIDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +   +         +   +   ++       +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAQK--------PQFRAIILSIYDAPTFVQSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D +  +           +           LT RE E    +
Sbjct: 109 EELVQAVRSVGLGGHYLCADAIRAL-----------RGGGQPAQALEILTPREREVFDLL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  EIA  L +S  TV+ + A+++ K    +    + + + ++++
Sbjct: 158 VKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFVLDHHLL 206


>gi|329947847|ref|ZP_08294779.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523471|gb|EGF50569.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 215

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 59/241 (24%), Gaps = 30/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ +V+  +     S +  +      L  +               L            
Sbjct: 2   ADRIRVVIADDQPLVRSALRLILEGDPELTVLGEAADGQGALDAARRL------------ 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +           ++          ++         F T     +   
Sbjct: 50  ---RPDIMLLDLHMPGRDGVWASERISEL-----APDVKIL---VLTAFDTDHLVSSALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +        +I   +       R      L ++        +             
Sbjct: 99  AGAVGFLLKDSSPEQILGAVRTAADGERPFSAAVLEQL-------VDATAMRAPSRQAPG 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    +++G  + EIA  LGI   TV  ++++++ K   + R           
Sbjct: 152 TLTEREREVAVLVAQGLANSEIADRLGIGAATVKTHVSTLLEKFKVRNRVQLAVAVAECR 211

Query: 245 I 245
           +
Sbjct: 212 L 212


>gi|284042085|ref|YP_003392425.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283946306|gb|ADB49050.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 216

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 35/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V++++  +       +  +    +    +           R  AL+             
Sbjct: 4   RVSLLIVDDHPVVRDGLRGMFNGDERFDVLGEAGDGAEAVERAQALS------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +        +R +A         +      L    + T  E +      
Sbjct: 51  --PDVVLMDLRMPGTDGVTAIRQLAE--------IAPHVHVLVLTTYDTDAEVLPAIEAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +        ++       +               V       +
Sbjct: 101 ATGYLLKDAPRDELLRAVSAAARGEAVLAPSVATRLL------------GRVRAPDGEPV 148

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  +++G T+ E A  L IS  T+  ++  +  K     R+ A+A A    ++
Sbjct: 149 TDREREVLALVAQGATNREAARRLFISEATIKTHLLHVYAKLGVNDRAAAVAAAYDRGLL 208


>gi|172036050|ref|YP_001802551.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697504|gb|ACB50485.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 224

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 12/226 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +       A+T   G   F LV+         D  +     + 
Sbjct: 5   ILVADDDLGIRVAVKDYLEMHGY-TAITAQNGEDAFSLVQKYRPHLLVSDIKMPYKDGYT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+ +            +    +F     T    I       + Y    F++  ++  + 
Sbjct: 64  LVKELRQL------PEFRLLPVVFLTECDTTENRIQGYQVGCDVYLPKPFEMEELKAVIR 117

Query: 146 LLFPKGRIILRD-----RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            L  + +II  +        +I      Q    K       +  +LT RE E L  ++ G
Sbjct: 118 NLLERSQIIQSEWRFSQEQAQIQKNLQQQQEAAKISIQAEMELLDLTRRESEVLDLLTMG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EI   L +S  T+  Y++S++RKT T  R+  + +A+ +++V
Sbjct: 178 LSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFALDHHLV 223


>gi|158315625|ref|YP_001508133.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158111030|gb|ABW13227.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 217

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 62/221 (28%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     +  + E   G     + R        +D  +      
Sbjct: 7   VVVADDHPLIRAGVRALLLSLDDLDLVGEAADGDEAIRIARATRPDVVLMDLHMPGTDGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +           L     L   +                 Y     D   +R  +
Sbjct: 67  TATRSITAE--------LPDTAVLVVTMVEDDASVFAAMCAGARGYLLKGADQDELRRAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     I        +  L A+                +LT RE + L  ++ G+ + 
Sbjct: 119 TAVAHGEAIFGSRVAARVLALLAH--------PPREVPFPQLTDRERQVLDELARGRNNA 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA +L +S  TV N++++I  K     R+ AI  A    +
Sbjct: 171 SIARVLNVSTRTVANHVSTIFAKLQLADRAEAIVRAREAGL 211


>gi|312963410|ref|ZP_07777892.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311282216|gb|EFQ60815.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 209

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDLLVVGEASNGEQLLETLRHV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIARIRALSHPP--------AILVLSMHDEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +                       L+
Sbjct: 99  AGYATKDSDPALLLTAIRKVAAGGRYIDPDLADRMVFEVGLTDARPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLNITSLAELVKYAMEHRLL 209


>gi|226304850|ref|YP_002764808.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183965|dbj|BAH32069.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 219

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 63/233 (27%), Gaps = 32/233 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +       V    T SD +  +   D   +    +  L                 +   
Sbjct: 18  DDHPLFREGVVRALTGSDRIDVLGEADDGAAALAMIREL---------------RPKVAL 62

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +       +   +   E             L                     +   
Sbjct: 63  IDFRMPHLDGTQVAAAVVRDELP--------TRVLLLSAHDESSVVYQALQAGAAGFLPK 114

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               A I   ++       ++          +AA      +      G    L+ RE E 
Sbjct: 115 ESTRAEIVSAVLDCAAGRDVLPPS-------IAAGLVGEVRRRSEPSGP--TLSAREREV 165

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I++G +   IA  L ++ +TV  ++  +  K     R  A+A A+R  ++
Sbjct: 166 LGLIAQGASIPTIASQLFLAPSTVKTHVQRLYEKLGVNDRGAAVAAAMRQGLL 218


>gi|182415052|ref|YP_001820118.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177842266|gb|ACB76518.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 274

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 60/236 (25%), Gaps = 27/236 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  I +  +       +  +      +  +     + + T  +  L              
Sbjct: 41  KTRIYVVDDHPLMRMGLRAMINGEPDMEVIGEAADSATATAEIMKL-------------- 86

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +  +   +L++         +   +          +      +      
Sbjct: 87  -RPDLVIADISLRGNSGIELIK-----NVKAFDPGIDVVVVSM---YDESIYALRVLKAG 137

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        R+   +         +         +L  +                 L
Sbjct: 138 ARAYVMKQDVTTRVLDAIRRARNGQLFVSERVAT--QMLNRFVDGT--EDGAADSPVSSL 193

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + RE+E +  I EG  + EIA  L +S  TV  +   I RK      +  + + VR
Sbjct: 194 SDRELEIVNLIGEGLPTREIAAKLFLSIKTVETHRVHIKRKLNLANATQLVQFCVR 249


>gi|167561159|ref|ZP_02354075.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
          Length = 218

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  L     +   ++  +                G+    +    
Sbjct: 3   LQILLVDDHAIVRQGIRQLLIDRGIAREVMEAE---------------CGSEALAITDRS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L     L   ++      +       
Sbjct: 48  AFDVILLDISLPDMNGIEVLKRLKRK--------LPSTPVLMFSMYREDQFAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMVSAISQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I+ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMIASGKRLTDIAHALSLSVKTVSVYRTRLLEKMKLSNNAELTFYVMSNRLV 210


>gi|239813946|ref|YP_002942856.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800523|gb|ACS17590.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 247

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 76/247 (30%), Gaps = 33/247 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +D +  +F      RS  L  +            M   T              + 
Sbjct: 20  VLVVEDDSRARAFFEASVQRSASLFWLGSAGTVHEALAWMAQAT-------------IIP 66

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      D++R            V+         VF      +         
Sbjct: 67  DVLLVDLGMPDGSGLDVIREAVARFPGCEPLVI--------SVFGDEENVLASIEAGAVG 118

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK----------SYDVH 179
           Y         I   ++ +      I       +  LA Y++              +    
Sbjct: 119 YIHKDAAPEDIAQTIVEMKAGASPISPMIARRV--LAKYRSLQLAGTLAAAPPEAALGNT 176

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE E LT I+ G +  EIA + G+S +TV  +I ++  K A  ++S A+  
Sbjct: 177 TTAPSLLSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFE 236

Query: 240 AVRNNIV 246
           A R  ++
Sbjct: 237 ATRLGLL 243


>gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006]
          Length = 247

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITP 122
           D  + S+   +       +       VL   +  F P                   N+  
Sbjct: 43  DFAIISN-RMEWFDFYTKNNLQFIDPVLITASCCFTPFLWDENIMISSGLKMPKIFNMAK 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYD 177
              + N Y  +  D     + L ++  K      +++      ++ +L         +  
Sbjct: 102 NYDVINGYTFVLHDHNHNLVVLSIIMDKSCDDDIEKIIVDKKNDLQMLLLTTHEKLITLY 161

Query: 178 VHWGKDFE---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                  +         L+ RE E L W S GK+  EIA+ILGI   TV  ++ + ++K 
Sbjct: 162 QEINDTHQFNKKNQKEILSKRENEILYWASMGKSYQEIALILGIKLTTVKYHVGNAVKKL 221

Query: 229 ATKTRSGAIAYAVRNNIV 246
                  AI   V   ++
Sbjct: 222 GVTNAKHAIRLGVELKLI 239


>gi|167030904|gb|ABZ05772.1| HrpY [Pectobacterium carotovorum subsp. carotovorum]
          Length = 213

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +    D L+ +           ++ ++T             
Sbjct: 4   PIRLMIADDHVIMREGLKQIFALDDSLSVVAEAGNGAQVLAQLRSVT------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       L+  +             R   L   ++             
Sbjct: 51  --PDLLLLDMSMPGISGEALISRVVAQ--------YPRLPILVLSMYSEAQIAQHALKSG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +   D   +   +  +    R I      ++        + +        K   L
Sbjct: 101 ARGYITKDKDPEALLAAIRRVAQGARYIDHTIAEQL------VFSNYAEGGRA--KHDVL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + +   ++G   + IA  L IS  TV+ + A +M K    T    + Y V   ++
Sbjct: 153 TAREHQIMIMFAQGMGINAIANELAISNKTVSTHKARLMEKMQFSTNVEIVKYVVSKKLI 212


>gi|300777043|ref|ZP_07086901.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
 gi|300502553|gb|EFK33693.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum
           ATCC 35910]
          Length = 229

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 25/243 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E   + + +  ++      +S L  R   +  +            +  L E        
Sbjct: 1   MEKDIIRVAIVDDEALFRQGISLLIQREKDIELVNEFSNGKELLDELMTLQE-------- 52

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                       D I+      ++    A  +    Y  ++    +    ++T    +  
Sbjct: 53  ----------LPDIILMDLNMPEINGVEATKQIHVKYPQIKI---IALTSYNTKAFIVNM 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +       A +   +  ++ KG     + +  +           K     +  
Sbjct: 100 IQSGACSFLKKNSSPAELLTAIREVYSKGFFYNNEVMEALHQN---LTEPKKKVSSIFDA 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  ++ RE E L  I +   + EIA +L IS  TV  +  S++ KT  K  +G + YA+ 
Sbjct: 157 N-HISKREKEVLELICKQYNTAEIADLLFISSRTVEGHRNSLLLKTGAKNTAGLVVYAIE 215

Query: 243 NNI 245
           + I
Sbjct: 216 SKI 218


>gi|256377765|ref|YP_003101425.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255922068|gb|ACU37579.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 217

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V  +      +  +   D                G +   L    
Sbjct: 2   IRVLLADDEPLIRAGVRAVLATDPAITVVAEADD---------------GRAAVRLALEH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           +A S                   F           G  
Sbjct: 47  RPDVALLDIRMPRLDGLAAAEELARSA--------PGVAVAVLTTFGDDAYVARALDGGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D   +  G+  +   G  +       +  LAA              +   LT
Sbjct: 99  KGFLLKSGDPRELLAGVHAVAGGGAYLAPRVAARV--LAALDTRPLGRAAEARARADVLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G ++  IA  L +   TV  ++++I+ +     R  A   A    +V
Sbjct: 157 PRERDVLALVGAGLSNARIARRLNLVEGTVKGHVSTILTRLDLANRVQAAVLAHDAGLV 215


>gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301]
          Length = 199

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V       LT +E+  L  +
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEISVLKGV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 AQGLSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|323525472|ref|YP_004227625.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323382474|gb|ADX54565.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 292

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 31/235 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D +R   +  L  + + LAR             +                      Q  D
Sbjct: 9   DAERRDGLKALLRQINRLARFNEGQDWRQVERTLKR--------------------QWPD 48

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V      D +    +     +Y  L+           +                +   
Sbjct: 49  LLVID--WQDWMSVKDVRHLLSHYPDLRIA---VLTDKISPKVVGELMDEGVRGVVARET 103

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREV 191
           D   I     ++   G  +    L     L    A    +              L+ R+ 
Sbjct: 104 DPCLIVRAFEMVLLGGHYVPSGALPLNPPLPADTAIRPFDEKNPPPRRARLSNGLSPRQE 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 164 QIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|260901502|ref|ZP_05909897.1| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           AQ4037]
 gi|308107688|gb|EFO45228.1| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           AQ4037]
          Length = 202

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 29/221 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            + V          A+++ L+  ++      ++ E   G                LD  +
Sbjct: 4   VALVDDHVIVRSGFAQLLNLENDITVVGEFGSVAEARTGLPAV------HPHVVILDISM 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   +L+  +                     V  +              Y S      
Sbjct: 58  PDESGLNLLSEI---------PTGIACV--MLSVHDSPAMVEKSLKLGAKGYLSKRCSPD 106

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +      G  +  D            A    +         +LT RE E    ++
Sbjct: 107 ELIQAVRTSASGGCYLTSD-----------IAIKLATPSDKAASLCQLTRRENEVCQLLA 155

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +G     +A  LG+S  TV+ + A+ + K   K        
Sbjct: 156 KGLDVKSVAAELGLSHKTVHVHRANAIDKLGVKNNVELAKL 196


>gi|296123997|ref|YP_003631775.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296016337|gb|ADG69576.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 217

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E   + +  L  R   L  +                    GA    ++   
Sbjct: 3   IQVALIEDHELVRTGLKLLIERQKDLQVVGEAAD---------------GAEGLKIIART 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     LD  +     F+L+  +   +        + P  L       L           
Sbjct: 48  LPDVVVLDLSIPHLNGFELLEQLQHQK--------RPPKVLVVTANEDLDSLQRSWNLGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +       + + +  +    ++       +      +     +           L+
Sbjct: 100 AGHLAKRSAADELIVAIRKIAAGEKVFPSKEESKAVKTLGFNETSGRLTGAES-----LS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G  + EIA  L IS  TV  Y +  M+K + + R+  + +A++   +
Sbjct: 155 ERETEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELVRFAMKMGWL 213


>gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
 gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha
           proteobacterium HTCC2255]
          Length = 222

 Score =  101 bits (253), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 82/240 (34%), Gaps = 39/240 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+ +VL   +    S +S   +  + ++ +  +     +   +  +   +G    +   
Sbjct: 7   EQIKVVLAESNPMILSAMSEKFSSDERISLISTVTTAEDFLSTVLRVKVDLG---IVCWT 63

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                 +K+  ++  +     +   A +                     +L  +    A 
Sbjct: 64  LPQLGGEKVIEVLRENPSAPKILVYAQNH--------------------SLEVSRRALAA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +C+    V  +    + +     +     + E+                     F 
Sbjct: 104 GAAGFCNDEQTVDELLETAITVASGKMVFPFMDVRELQ----------------DDPLFM 147

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE   L ++++G ++ E+A  + IS NTV  +++++  K   K RS AI++     +
Sbjct: 148 LTKREKIILQFLADGSSNKELAESMKISINTVKFHLSNLYEKLGVKNRSQAISFFYSRRL 207


>gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9]
 gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9]
          Length = 158

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 40  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 87

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 88  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 147

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 148 KTALRMG 154


>gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli
           STEC_7v]
          Length = 148

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 30  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 77

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 78  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 137

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 138 KTALRMG 144


>gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
 gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli
           1827-70]
          Length = 123

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 5   DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 52

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 53  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 112

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 113 KTALRMG 119


>gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1357]
          Length = 147

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 29  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 76

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 77  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 136

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 137 KTALRMG 143


>gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
          Length = 221

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 103 DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 150

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 151 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 210

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 211 KTALRMG 217


>gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
 gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli
           TA280]
          Length = 221

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 103 DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 150

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 151 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 210

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 211 KTALRMG 217


>gi|326792258|ref|YP_004310079.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM
           5427]
 gi|326543022|gb|ADZ84881.1| two component transcriptional regulator, LuxR family [Clostridium
           lentocellum DSM 5427]
          Length = 207

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 68/220 (30%), Gaps = 29/220 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +I +D        +  + E             G       R    +   LD  +   
Sbjct: 1   MIHIILVDDDAMIREGLKMIIETQEDFILDAVCENGEKAIEACRLYKPEVTLLDIRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++ + +                 L    F      +         Y   +     + 
Sbjct: 61  NGIEVAKLLIEEN---------ISKPLLLTTFDEPDLILNAMKANVYGYILKSASADTML 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200
             +  +   G +  +D +        +  +            F+ LT REVE    I+EG
Sbjct: 112 SAIRTVALGGNVFQKDVM-------DFITSQVSEQKQKENHLFDSLTEREVEVAAAIAEG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
            ++ EI   L IS  TV N+I+ I+ KT  + R+  A+ Y
Sbjct: 165 LSNKEIGKKLFISDGTVRNHISVILSKTGLEHRTQIAVRY 204


>gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354]
 gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 92  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 140 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 199

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 200 KTALRMG 206


>gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
 gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185]
 gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli
           M718]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 92  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 140 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 199

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 200 KTALRMG 206


>gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026]
 gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412]
 gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
 gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory
           protein LuxR family [Escherichia coli UMN026]
 gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042]
 gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412]
 gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302]
 gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli
           TA143]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 92  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 140 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 199

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 200 KTALRMG 206


>gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 234

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 8/221 (3%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
             +        +   + +  ++    +F L R         +  +      +    + ++
Sbjct: 13  PELSRAINRTDFFRLLKSAAQHYNFDNFALARISETSAPFGERDIVITNVAERRVGLFIT 72

Query: 94  EKDKYYNVLQR--PTELFCPVFHT--LPENITPP----AGMDNRYCSLTFDVARIRIGLM 145
              +    ++      L  PV      PE+          +   +  +       R   +
Sbjct: 73  TLKEALGTVRAKSAQFLATPVHGRSVRPEDYRSDLVFNEFLSGVFLFIPLFTPEGRRYCL 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  + +   +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 133 VLSGERQEPDQSEIADMLLDAMRIFDKLYEEILTQEMSGRLTQREQEIVKWTSEGKTSAE 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 193 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A]
 gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11]
 gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
 gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A]
 gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli
           E128010]
 gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli
           H591]
          Length = 148

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 30  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 77

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 78  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 137

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 138 KTALRMG 144


>gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS]
 gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia
           coli ATCC 8739]
 gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS]
 gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 92  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 140 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 199

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 200 KTALRMG 206


>gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B]
 gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736]
 gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1044]
 gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. 1125]
          Length = 147

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 29  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 76

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 77  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 136

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 137 KTALRMG 143


>gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein
           ygeK
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 92  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 140 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 199

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 200 KTALRMG 206


>gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai]
 gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK
 gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4196]
 gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4113]
 gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4076]
 gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4401]
 gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4486]
 gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4501]
 gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC508]
 gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4206]
 gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4045]
 gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4042]
 gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. EC4115]
 gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli]
 gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli
           O157:H7 str. EC1212]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 92  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 140 SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 199

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 200 KTALRMG 206


>gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 EDL933]
 gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK966]
 gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
 gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli]
 gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli
           DH1]
 gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736]
          Length = 148

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 30  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 77

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 78  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 137

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 138 KTALRMG 144


>gi|312887958|ref|ZP_07747542.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
 gi|311299439|gb|EFQ76524.1| two component transcriptional regulator, LuxR family
           [Mucilaginibacter paludis DSM 18603]
          Length = 222

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 76/241 (31%), Gaps = 24/241 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + +  +       +  L +       +        +   +  L            
Sbjct: 1   MEKIRVAIVDDQHIFRQSLGLLISSVPGFELVAEAAGGPEYLEILNTLPR---------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     LD  +      +L   +        Y  ++        V            
Sbjct: 51  ---LPHVTLLDMSMPGMNGIELNSILQEK-----YPEVKIV---ILSVNLQDRLISKMIT 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     D   +   +  ++  G  I    L  +  L  Y  +  + +        
Sbjct: 100 EGADAYLVKNCDKDELITAIQAVYKAGFYI---NLQTMQALQHYSDSKSRQHQYLNATAT 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T RE E L  I +  ++ EIA  L +S  TV  +  +++ KT  +  +G + +AV++ 
Sbjct: 157 DITRREKEVLEMICKELSAAEIASKLYLSVRTVEGHRNNLILKTGARNTAGLVIFAVKSG 216

Query: 245 I 245
           +
Sbjct: 217 L 217


>gi|73538297|ref|YP_298664.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72121634|gb|AAZ63820.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 232

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 74/227 (32%), Gaps = 21/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIV 78
              V+ +    D  A  + L   +S  + +  + E   G +   +VR        LD  +
Sbjct: 23  VFAVATILIVDDHPAVRVVLKTHLSQVLGVTHVLEADNGQAAVEIVRQYAPDVVILDLDI 82

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D++  +           ++             P          N Y S T ++ 
Sbjct: 83  PRINGLDVIPRLKA-----IQPGVRILVISGQDQNTFAPRAR---QAGANGYVSKTQELP 134

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +     ++                           +   L+ +E+  +  ++
Sbjct: 135 EIVRCVESVLAGYSVMPDVDGGR------------ADGVDETRRLGSLSDKELVIMQMLA 182

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G ++ +I  +L IS  TV+ +   IM K   ++    I +A R++I
Sbjct: 183 KGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDFARRHHI 229


>gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 222

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 16/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++ +  +      + AL E       +G++       D       D +V+   P     
Sbjct: 13  RVVVIAASWQERASLQALVEANPALEFLGSAADAEKLVDCLAGSVPDVVVTDIAPEAGDA 72

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L E       L        P        +                 A I   +  + 
Sbjct: 73  LKTLFELSHASPSLVLL--SDDPDND---WILDALPADAAAILPRNAMPAEIVASIEAVA 127

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  D L  +                       LT RE+E L  +++G  + EIA 
Sbjct: 128 AGLCVLTPDILARL-----LAGTRQPRQKASGEPFEALTSREIEVLAMLADGLGNKEIAR 182

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS NTV  ++++I  K     R+ A+   +R+  +
Sbjct: 183 HLDISDNTVKFHLSAIFGKLGATNRTEAVMLGMRHGFI 220


>gi|315617864|gb|EFU98462.1| response regulator [Escherichia coli 3431]
 gi|320184742|gb|EFW59534.1| response regulator [Shigella flexneri CDC 796-83]
 gi|323158603|gb|EFZ44617.1| response regulator [Escherichia coli E128010]
 gi|323165290|gb|EFZ51078.1| response regulator [Shigella sonnei 53G]
 gi|323180836|gb|EFZ66376.1| response regulator [Escherichia coli 1180]
 gi|323186794|gb|EFZ72114.1| response regulator [Escherichia coli RN587/1]
 gi|332095450|gb|EGJ00471.1| response regulator [Shigella dysenteriae 155-74]
 gi|332756063|gb|EGJ86416.1| response regulator [Shigella flexneri 4343-70]
 gi|332766645|gb|EGJ96849.1| bacterial regulatory s, luxR family protein [Shigella flexneri
           2930-71]
 gi|333003002|gb|EGK22556.1| response regulator [Shigella flexneri VA-6]
 gi|333003353|gb|EGK22899.1| response regulator [Shigella flexneri K-218]
 gi|333017784|gb|EGK37091.1| response regulator [Shigella flexneri K-227]
          Length = 166

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 15/172 (8%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +A S              +   V    P            Y S 
Sbjct: 1   MDMSMPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGAAGYLSK 52

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +  ++   R I  D   ++ L            +        L+ RE++ 
Sbjct: 53  GAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLSERELQI 105

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 106 MLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 157


>gi|73539273|ref|YP_299640.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72122610|gb|AAZ64796.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 223

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 61/236 (25%), Gaps = 30/236 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
              +++  +       ++HL    + L               M                 
Sbjct: 13  PARVLIVDDHPIVREGLAHLLNMHEELQVCCTASSAEEALQEM----------------V 56

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +  D   DLVR +                 L   +              
Sbjct: 57  CEPDMAIVDLSLHKDSGLDLVRTLRQHH--------PELAILVLSMHDESLFAERALRAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N Y         I   +  +      +       +         +  S +V  G    L
Sbjct: 109 ANGYLMKLEATEHIMSAIQEVLAGNIYLSAAMHGRLA------RALTASRNVTAGSVASL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + RE E L  I  G  + EIA  L  S  TV  + A+I  K    +    I +A++
Sbjct: 163 SEREFEVLHLIGLGFGTREIARKLNRSIKTVEAHQANIKEKLDIHSGKALIRFAIQ 218


>gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 73

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 40/68 (58%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               + ELT RE E L  + +G ++ EIA +L IS  TV  +I  I +K   K+RS A+ 
Sbjct: 3   VESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVI 62

Query: 239 YAVRNNIV 246
           YAVRN +V
Sbjct: 63  YAVRNQLV 70


>gi|229059483|ref|ZP_04196866.1| Response regulator [Bacillus cereus AH603]
 gi|228719849|gb|EEL71441.1| Response regulator [Bacillus cereus AH603]
          Length = 212

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVLDTVNDGKEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKI----KSNLMESKEEESKIDKSL-FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 209

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 23/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D +   +     +       +  E +      +V          D  
Sbjct: 3   IRIVVVDDHPVVRDGIRGQLATTDDLDVVGEAASADEAL-----AVVAATSPDLVVTDLR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +             +S              L    + T  + +         Y       
Sbjct: 58  MPGG---------GVSLITHLAASAPGVAVLVLTTYDTPDDVLPALDAGARGYVLKDAPR 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +        GLL +      +           L+GREV+ L  +
Sbjct: 109 EELFRAVRAVADGETFLAPSVA---GLLVSRVRARQQPAPAA------LSGREVDVLRLV 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G+T+ + A +LG++  TV  ++  +  K     R+ A+A   R+ ++
Sbjct: 160 ADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGLL 208


>gi|326318556|ref|YP_004236228.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375392|gb|ADX47661.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +S  + +  + E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLRQFLSEHVDLRVVGEASNGREAIDLVRNHEIDVLLMDLSMPGQSGLDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        I       + Y +   D   I   +  +
Sbjct: 67  AMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECDPKEIVEAIRTI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +       +                      +L+ RE +    +++G+T+ +IA
Sbjct: 119 SLGRRYLTPAVADLLAQQLNR--------KDDAPPHEQLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K A  + S    YA++N ++
Sbjct: 171 KSLSLSVKTVSTYRTRLMEKMALSSNSDLTYYALKNKLI 209


>gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 208

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 61/219 (27%), Gaps = 16/219 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     M  + E   A        +      +D  +      
Sbjct: 4   RILIADDHELTRAGLRAVIDREPDMVVVAEAGTAE----AAVERSLAGDIDLAILDIRFG 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +  + +       +        +  T     +  A     Y         +   +
Sbjct: 60  PGMNGLEAAGRILERAPTRILL---LTLHDTPEYVRSALAAGATGYVLKDAGREELLHAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +  D L +          M  +          LT RE E L  ++ G T+ 
Sbjct: 117 RAVGAGRSALPGDLLRKA---------MAPTVGPRPDDLDRLTPREREVLESVARGLTNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA  LGI   TV  ++  ++ K     R+ A  +A R 
Sbjct: 168 EIARDLGIGPGTVKAHVEKLIAKLGVADRTQAAVFAARA 206


>gi|315656460|ref|ZP_07909349.1| transcriptional regulatory protein DegU [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493019|gb|EFU82621.1| transcriptional regulatory protein DegU [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 224

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 11/215 (5%)

Query: 36  MIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +I +D        +  + E        G         DL Q    D ++       +   
Sbjct: 11  VILIDDDHEILEDLRLVIETDPEISVAGIGFDGSYVLDLVQTHHPDVVLMDVEMPKVDGI 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A  +    Y        +    F              + + +     A +   +  +  
Sbjct: 71  AATRQLKSRYP---NLGVIMLTNFRHDTWLKEALDAGADGFLTKDTPRADLSAAVKRVAH 127

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            GR +    L  +  +A Y+   F         +  LT  E +      +GK++ +IA +
Sbjct: 128 GGRFMSTKPLNML--IANYEDPNFTPDPRFRAGEKALTATERQVWQEALKGKSNAQIAKV 185

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +    +T+  ++++IM+K + ++R+  + ++ +N 
Sbjct: 186 MQSKESTIKTHMSAIMQKFSVRSRAELLVFSAKNG 220


>gi|256376351|ref|YP_003100011.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920654|gb|ACU36165.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 209

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 64/220 (29%), Gaps = 17/220 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D  A    L   +     +  + E   G +   + R        +D  +      +
Sbjct: 2   LVADDHAAVRAGLVMILGGAPGVRVVGEAGDGEAAVRMARELRPDVVLMDVRMPGVDGIE 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +A                L    F                +   + +   +   + 
Sbjct: 62  ATRRLAG-----------VCEVLVLTTFDLDEYVRGALRAGAAGFLLKSVEAPALVDAVR 110

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       +  +  + A          G    LT REV+ L  + EG ++ +
Sbjct: 111 RVAAGDGVLAPSVTRRV--MREFAAGPAARAKPDLGA---LTDREVDVLRCLGEGLSNAQ 165

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I   L I   TV  +++ ++ K   ++R  A   A   ++
Sbjct: 166 IGTRLRIGETTVKTHVSRVLMKLDLRSRVQAALLAQDADL 205


>gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC
           15444]
          Length = 213

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 59/185 (31%), Gaps = 16/185 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                   F    LD  +      D++R +     D    +          V       +
Sbjct: 40  VTAATGAKFDLAMLDLGLPDGSGLDVLRKVKQENPDTICVI--------TTVMGDDAWIV 91

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              +   N Y         +   L  +      +          +A    + F+      
Sbjct: 92  GALSAGANGYLLKDQPQDTLIRQLRQIADGVPALSPS-------IARRIMDHFRLTGPAA 144

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D +LT RE + L  I  G  + E+A  L +S NTV +YI  I RK    +R+ A  +A
Sbjct: 145 -PDDDLTARERDVLALIGRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHA 203

Query: 241 VRNNI 245
            R  +
Sbjct: 204 TRMGL 208


>gi|298504366|gb|ADI83089.1| helix-turn-helix transcriptional response regulator, LuxR family
           [Geobacter sulfurreducens KN400]
          Length = 214

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 29/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ +      +A +                    G     +    
Sbjct: 2   IKVLIVDDHAVVRDGLTMILESQSDIAVIGQAGD---------------GREAIAMAGSL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +A  +             +   +  TL           
Sbjct: 47  KPNVVVMDITMPELNGIEAARLIAREQ--------PATKIVILSMHDTLEHVYRALQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +  +    R   R       +      +     D+       L+
Sbjct: 99  RGYLLKESAGAEVTDAVRTVMRGHRYFGRGSRLPSDM------HRSACADLPKSPLDSLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E L  + EGK S EIA IL +S  ++  Y + +M K         + +A+ + 
Sbjct: 153 QREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITNIPSLVKFALLHG 209


>gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030]
          Length = 214

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   + ++  GL  +      + R     +  L  Y      +       + ELT 
Sbjct: 102 GIFGPLDSMEKVCRGLGAIVKGDNWLSR---RLLDQLVNYYKGKESNNVSEPAIEVELTR 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 159 REIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 213


>gi|259907792|ref|YP_002648148.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|224963414|emb|CAX54902.1| Nitrate/nitrite response regulator protein NarP [Erwinia pyrifoliae
           Ep1/96]
 gi|283477661|emb|CAY73577.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           pyrifoliae DSM 12163]
 gi|310768295|gb|ADP13245.1| Nitrate/nitrite response regulator protein NarP [Erwinia sp.
           Ejp617]
          Length = 209

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 63/240 (26%), Gaps = 34/240 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E Q+  +++  +       + HL         +           +   L          
Sbjct: 1   MEAQKYRVLIVDDHPLLRRGLHHLLAMEPRFDLIAEAGDGEEALFKARQL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      + +  +  S              +   V     +    
Sbjct: 51  -----HPHLILLDLKMQGMSGLETLNALHASGI--------ASRVVVLTVSALRRDFTAL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     D   +   ++ +   G            L +                
Sbjct: 98  QEAGAEGYLLKDSDPEELLAQIIKVAEGGVAWSHRLQAPGALESWKC-----------DP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  ++ G T+ ++A  L IS  TV  +I +++RK   +TR  A    + 
Sbjct: 147 LALLTVREQEVLKEVASGLTNKQVAENLAISEQTVKVHIRNVLRKLNVRTRVAATVLWLE 206


>gi|153836855|ref|ZP_01989522.1| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           AQ3810]
 gi|149749813|gb|EDM60558.1| transcriptional regulatory protein UhpA [Vibrio parahaemolyticus
           AQ3810]
          Length = 203

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 29/221 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIV 78
            + V          A+++ L+  ++      ++ E   G                LD  +
Sbjct: 5   VALVDDHVIVRSGFAQLLNLESDITVVGEFGSVAEARTGLPAV------HPHVVILDISM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   +L+  +                     V  +              Y S      
Sbjct: 59  PDESGLNLLSEI---------PTGIACV--MLSVHDSPAMVEKSLKLGAKGYLSKRCSPD 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +      G  +  D            A    +         +LT RE E    ++
Sbjct: 108 ELIQAVRTSASGGCYLTSD-----------IAIKLATPSDKAASLCQLTRRENEVCQLLA 156

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +G     +A  LG+S  TV+ + A+ + K   K        
Sbjct: 157 KGLDVKSVAAELGLSHKTVHVHRANAIDKLGVKNNVELAKL 197


>gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family
           [Rhizobium leguminosarum bv. viciae]
          Length = 248

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 91/253 (35%), Gaps = 32/253 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWT---------------MRMYALTEYV 56
           ++  ++ R   VS + +RSDL  R+I +   V                   R+    E  
Sbjct: 9   MSSAEQLRMVRVSRISSRSDLFPRLIAMQKLVDAQGFAIFRVSGSGLPAKQRLVCELENW 68

Query: 57  GASHFLL--VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           G S+        D + +  LD I  S  P         +               F P   
Sbjct: 69  GPSNAGFGKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPAD---------FAPFMT 119

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            L + I P +G+          +  +  G +L          D + E+     +      
Sbjct: 120 RLQDGILPFSGLA-----FPVRLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLL 174

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           S D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R
Sbjct: 175 SLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNR 234

Query: 234 SGAIAYAVRNNIV 246
             AIA A+R   +
Sbjct: 235 IQAIAKAIRLGYI 247


>gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 218

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   + ++  GL  +      + R     +  L  Y      +       + ELT 
Sbjct: 106 GIFGPLDSMEKVCRGLGAIVKGDNWLSR---RLLDQLVNYYKGKESNNVSEPAIEVELTR 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 163 REIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRN 217


>gi|115523303|ref|YP_780214.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517250|gb|ABJ05234.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris
           BisA53]
          Length = 237

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 17/234 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
              L  +   +        +       G +H +     +   ++ + ++   +    V+ 
Sbjct: 4   DQALTAIERANSVADLGRILVDWRNESGVAHLVYHATHVPACEQPNPVLLLTYDDAWVKR 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPE-----------NITPPAGMDNRYCSLTFDVA 138
                      V+    +   P+     E                    +         A
Sbjct: 64  YVERNYFSIDPVVVAGRDAVLPIDWMAVEHDTPEARHFFAEAESFGVGRHGLTLPIRGPA 123

Query: 139 RIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVE 192
             R    +                + +  LLA Y  +                L+ RE +
Sbjct: 124 AERALFTVTTNATDDHWHRWRFSYMKDFHLLAHYLHDRAMRLAGLRLDHVMRPLSSRERQ 183

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL  +  G+T  +IA  L +S + V+ Y+ +  RK    T   AIA AVR +++
Sbjct: 184 CLNGLVRGRTPGQIAGELDLSGSAVHGYLRTARRKLDCATVEQAIAKAVRLDLL 237


>gi|320533376|ref|ZP_08034066.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134393|gb|EFW26651.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 246

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 69/255 (27%), Gaps = 38/255 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L+ ++  +  +             GA    L R        +D  
Sbjct: 2   IRLVIADDQAVVRAGLSVILGAEEDIEVVGEA-----ADGAEAIALARELRPDVVCMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F    + +         +     D 
Sbjct: 57  MPGTDGIAATRAIVSDPDLDVD-------VLILTTFDVDDDVLASLEAGAAGFLLKGADE 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------------- 182
             +   +  +      + +     I    + + +         G                
Sbjct: 110 DTLLGAVRSVAAGEGTLDQRVTRRILRELSRRGSRGVLARPDTGAQHQYTDRAADAGGAS 169

Query: 183 -----------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                      D  LT RE+E L  +++G ++ E+A  L +   T+  ++  +M+KT ++
Sbjct: 170 GHASFAGAASVDVALTSRELEVLRLLAQGMSNGEMARHLYVEPTTIKYHLTGLMQKTGSR 229

Query: 232 TRSGAIAYAVRNNIV 246
            R   + + +R  +V
Sbjct: 230 DRLQTVLWGIRAGLV 244


>gi|312868682|ref|ZP_07728875.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3]
 gi|311095796|gb|EFQ54047.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 12/196 (6%)

Query: 56  VGASHFLLVRWDL---FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           +  S   L             +D ++           +  +++        +   +   +
Sbjct: 20  LRWSTVRLAVLTPTCESNRAGIDILIMDLSMPPGESGLITTKRIHDK--FPKVKIIILSM 77

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                      +     Y   +     I   L  +      +  +      L++      
Sbjct: 78  HEEQEYINRAMSNGAMSYILKSSSDGEILTALKHVVNGENYLDAN-----ILISKSDLKQ 132

Query: 173 FKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             +            L+ RE E    ++ G ++ EI+  L IS  TV  + A+I RK   
Sbjct: 133 INASGADVNLKGYSVLSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHL 192

Query: 231 KTRSGAIAYAVRNNIV 246
            +R   + YA+ ++++
Sbjct: 193 HSRVELVRYAIHHHLI 208


>gi|77745297|gb|ABB02549.1| response regulator [Lactobacillus reuteri]
          Length = 217

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 35/243 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++          V +L  + D    +      +                         
Sbjct: 3   RVLVADNYPIIRMAVKNLVEQLDNFKVIAEETTGID--------------------ASLR 42

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAG 125
            ++  +D I+              +       + +        +F +             
Sbjct: 43  VEQGDIDIIIMDLAMPPG-----ENGLITIKRIHEHFPNTKIIIFSSRNEPQYINQAIYN 97

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KD 183
             N Y   +     +   L       + +         ++      + K    H+     
Sbjct: 98  GANSYIFKSSSPKELVHALRHAINGEKYLD-----NNIMVTKKDLLVIKGGSPHFDLGNY 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  I  G T+ EIA+ + IS  TV  +   IM+K    + +  + YAV++
Sbjct: 153 IALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKH 212

Query: 244 NIV 246
            +V
Sbjct: 213 QLV 215


>gi|294629076|ref|ZP_06707636.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292832409|gb|EFF90758.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 213

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 29/232 (12%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            +  R             LA ++ ++  +    ++       G +    V         L
Sbjct: 11  AEPVRVLLAEDQGMMRGALALLLGMEDDLEVVAQVSR-----GDAIVDAVLAHRPDVALL 65

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D    +                 L    F                +    
Sbjct: 66  DIELPGMTGLDAAAELRERA--------PGCRVLILTTFGRPGYLRRAMEAGAAGFLVKD 117

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             V  +   +  +     ++                               LT RE + L
Sbjct: 118 GPVEELASAIRRVLAGETVVDPALAAAALSAG----------------PSPLTARECDVL 161

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              ++G T  +IA  L +S +TV NY+++ + KT T+ R+ A+  A +   +
Sbjct: 162 NASADGATVADIASRLHLSESTVRNYLSAAIGKTGTRNRTEALREARQRGWL 213


>gi|311742977|ref|ZP_07716785.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311313657|gb|EFQ83566.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 216

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 17/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   +S    +  + E   GA+   LV         +D  +   
Sbjct: 1   MTTVLVVDDHAMFRAGMIAVLSAMDGITVVGEAPDGATAIRLVGEVRPDVVLMDLRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +                 +   +                 Y         + 
Sbjct: 61  DGLTATARITEQH--------PGVAVVVLTMNDDGDSVFAALRAGARGYLLKEAGADDVE 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEG 200
             L  +     +            A      F        + F  LT RE E L  ++ G
Sbjct: 113 RTLAAVMRGEAVFGPRV-------AEQVVGFFSGIGRSSPQAFPHLTVREGEVLDLMARG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  IA  L +S  TV N ++ ++ K   +TR+ A+A A    I
Sbjct: 166 LDNASIARRLFVSEKTVRNRVSDVLAKLQARTRAEAVARARDAGI 210


>gi|158318427|ref|YP_001510935.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113832|gb|ABW16029.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 398

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 2/144 (1%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           R   L    F              + +         +  G+  +     +I       + 
Sbjct: 236 RSRILILTTFDLDEYVHAALRAGASGFLLKDAYPEELLAGIRAVAVGDAVIAPALARRLL 295

Query: 164 -LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              A +  +     +     +   LT RE E L  I  G T+ EIA  L +S +TV  ++
Sbjct: 296 DAFAQHLGDALPDGERAADPRLDTLTEREREILVAIGHGWTNGEIAERLVLSESTVKTHV 355

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
             ++ K   + R  A+  A    +
Sbjct: 356 GRMLAKIGARDRVQAVICAYDLGL 379


>gi|82702364|ref|YP_411930.1| two component LuxR family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82410429|gb|ABB74538.1| two component transcriptional regulator, LuxR family [Nitrosospira
           multiformis ATCC 25196]
          Length = 211

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +   L  +       +  +   +  +  +      +    +M                  
Sbjct: 3   IKTFLADDHRLFRDGLRRILAETTDIVVVGEATDGLDALKKMR---------------LG 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      ++++ +            +         +H     I       
Sbjct: 48  GWDVGLLDVSMPGMNGLEVLQRI-----MDDDPKHRILMLST---YHEDEYAIRAIRAGT 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  L   GR I      ++                   +   L+
Sbjct: 100 SAYLTKNSPTDLLISVIRRLAHGGRYIDPKLAEKLLFDLG--------PSSTMPRHSALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G +  EI+  L +S  T++ Y A ++ K   +  +  I Y   + ++
Sbjct: 152 NRELDVLKLIAVGISLTEISQKLKLSAKTISTYRARVLEKMGMQNNAQLIRYVAEHKLL 210


>gi|269977167|ref|ZP_06184140.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
 gi|306818900|ref|ZP_07452621.1| transcriptional regulatory protein DegU [Mobiluncus mulieris ATCC
           35239]
 gi|307701147|ref|ZP_07638172.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|269934470|gb|EEZ91031.1| transcriptional regulatory protein DegU [Mobiluncus mulieris 28-1]
 gi|304648302|gb|EFM45606.1| transcriptional regulatory protein DegU [Mobiluncus mulieris ATCC
           35239]
 gi|307614142|gb|EFN93386.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 224

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 73/215 (33%), Gaps = 11/215 (5%)

Query: 36  MIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +I +D        +  + E        G         DL Q    D ++       +   
Sbjct: 11  VILIDDDHEILEDLRLVIETDPEISVAGIGFDGSYVLDLVQTHHPDVVLMDVEMPKVDGI 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A  +    Y        +    F              + + +     A +   +  +  
Sbjct: 71  AATRQLKSRYP---NLGVIMLTNFRHDTWLKEALDAGADGFLTKDTPRADLSAAIKRVAH 127

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            GR +    L  +  +A Y+   F         +  LT  E +      +GK++ +IA +
Sbjct: 128 GGRFMSTKPLNML--IANYEDPNFTPDPRFRAGEKALTATERQVWQEALKGKSNAQIAKV 185

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +    +T+  ++++IM+K + ++R+  + ++ +N 
Sbjct: 186 MQSKESTIKTHMSAIMQKFSVRSRAELLVFSAKNG 220


>gi|2765824|emb|CAB09344.1| SsrB [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 193

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +            LD  +      D++      +  + +  +          +   
Sbjct: 19  GLEVYNACCAYEPDILILDLSLPGINGLDII-----PQLHQRWPAMNIL---VYTAYQQE 70

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   N Y   +     +   L  +    R I      E  L            
Sbjct: 71  YMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAIL---------AEL 121

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE + L  I EG T+  I+  L IS  TV  +  ++MRK      +  
Sbjct: 122 NADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 181

Query: 237 IAYAVRNNIV 246
           +  A R  ++
Sbjct: 182 LNCARRMRLI 191


>gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 238

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 77/239 (32%), Gaps = 23/239 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S       +++ +  LD   +    +  L     +   +  ++           ++ + 
Sbjct: 7   ASRDLLIQQMVSTISELDGQTAVENALEWLRRECNSERAMFYQFKGPVLLTF---ITCNV 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127
                +            V++                        +  + +       + 
Sbjct: 64  DDAWGKAYRQRGLITQDPVIR-CYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAIS 122

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A     +  L   GR I  ++ + +  L     ++ +           LT
Sbjct: 123 YGYMN-HCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFC---SRGLT 178

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 179 HRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 237


>gi|118581564|ref|YP_902814.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118504274|gb|ABL00757.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 203

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 23/221 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D +     L   ++    ++   E   GA+   L+R        LD  +     
Sbjct: 3   RVLIADDHVMFRQGLINLLTTAEDIHIAAECGDGATALELIRSLEPDIAVLDITMPKLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             + R M                 +   +           +   + +         +   
Sbjct: 63  ISITRAMGNLGL--------ATRAIILTMHDDPLMYGRAVSAGAHGFILKDDAYEELLSA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   G  I R                            ELT RE E L  I+ G T+
Sbjct: 115 LRTVAAGGTAISRAIQHAAI--------------EPEPPVAELTEREREILGLIAHGCTN 160

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             IA  LGIS  TVNN+  ++M K    + +  + Y++   
Sbjct: 161 RMIAQHLGISIKTVNNHRTNLMGKLNLHSTAELVRYSLLTG 201


>gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 207

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 37/239 (15%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  +       +++    +D L  +           ++ ALT                
Sbjct: 4   IMIVDDHPIVREGLANFIEIADDLTVVATASNGQEALEKLAALTRQ-------------P 50

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP--PAGMD 127
               +D  +       L+  +                         +   +         
Sbjct: 51  DLILVDLQMPEMSGKKLLEEL-------------PTLSNVLIFSTEIDGELAQHFIQKGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   I   +  L      I          +++        +  +      +T
Sbjct: 98  RGYLLKDEDPTDIVNHIQKLLADDSYIA---------ISSEVLTASFQHRQNEENVPTIT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ + L  +++G T+ EIA  L ++  TV  Y+  +        R+ AIAYA+R+N++
Sbjct: 149 EQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 207


>gi|91779308|ref|YP_554516.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91691968|gb|ABE35166.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 218

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 59/225 (26%), Gaps = 18/225 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            +  ++ L    D       L   +     +    E VG +        L    +   ++
Sbjct: 4   TSPAIARLILVDDHPLVRDGLRARLEAVRNL----EVVGEAANAQEALALAASAEPHLVL 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  +          + +  ++            L           + Y        
Sbjct: 60  MDVGMNGMNGIALAGMFHERFPAIRVLMLSM---HDNLEYVTQAVRAGASGYVLKDSPAT 116

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +                                      LT RE + L  ++
Sbjct: 117 EIIQAIGAVLEGKSFFSAG-----------LGARLIQASATQSPVERLTPRERDILDALA 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EG +S +IA    +S  TV  +  ++ RK   + ++  I +AV N
Sbjct: 166 EGLSSKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|187924633|ref|YP_001896275.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187715827|gb|ACD17051.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 210

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 23/226 (10%)

Query: 25  HLPTRSDLLARMIP----LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
            +    D           +       +   A T   G     LVR   F    LD  +  
Sbjct: 3   RVLIADDHAIVRGGFKQFVADEPDMCVAAEAAT---GDQTISLVREQAFDVVLLDIAMPD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D +R +     ++          L    +      I       N Y +   +   I
Sbjct: 60  KNGIDTLRVIKQVRPEQG--------VLILSGYPESQYAINLLRAGANGYLNKDCEPEEI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R +       +                       L+ RE +    ++ G
Sbjct: 112 VRAIRAVARGHRYLSEAVADTLA--------DNLDKPAAGRPHEALSEREFQIFCKLAAG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   +IA  L +S  TV+ Y A ++ K      +    YA++N ++
Sbjct: 164 QIPTDIAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 209


>gi|326773122|ref|ZP_08232406.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637754|gb|EGE38656.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 246

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 71/255 (27%), Gaps = 38/255 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L+ ++  +  +             GA    L R        +D  
Sbjct: 2   IRLVIADDQAVVRAGLSVILGAEEDIEVVGEA-----ADGAEAIALARELRPDVVCMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F    + +         +     D 
Sbjct: 57  MPGTDGIAATRAIVSDPDLDVD-------VLILTTFDVDDDVLASLEAGAAGFLLKGADE 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--------------- 182
             +   +  +      + +     I    + +++     +   G                
Sbjct: 110 DTLLGAVRSVAAGEGTLDQRVTRRILRELSRRSSRGALAEADTGAQHRYTDRAADAGGAS 169

Query: 183 -----------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                      D  LT RE+E L  +++G ++ E+A  L +   T+  ++  +M+KT ++
Sbjct: 170 GHVSYAGPASVDVALTSRELEVLRLLAQGMSNSEMAAHLYVEPTTIKYHLTGLMQKTGSR 229

Query: 232 TRSGAIAYAVRNNIV 246
            R   + + +R  +V
Sbjct: 230 DRLQTVLWGIRAGLV 244


>gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
 gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family
           [Saccharomonospora viridis DSM 43017]
          Length = 208

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 62/229 (27%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           +  A ++ L   ++            G      V          D  
Sbjct: 10  IRVVLAEDQTMVVEAFAELLNLQPDITVCATAKN-----GVDALAAVAEHDPDVLVADIE 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D+   +             R   L    F                Y      +
Sbjct: 65  MPRGSGLDVAAELHRRGS--------RTKVLIVTTFARSGYLRRAMDAGVTGYVLKDAPI 116

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +   G ++  +                      W    +LT RE E L  +
Sbjct: 117 GELADALRKVHAGGTVVSAELAL-----------------AAWDHSDQLTDRERELLRQV 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T+ +IA  L ++  TV NY+++ M K   + R+ A   A     +
Sbjct: 160 ADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKAARERGWI 208


>gi|38232721|ref|NP_938488.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198979|emb|CAE48596.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 219

 Score =  101 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +      +     M  +     GA               +D  +     
Sbjct: 3   RIVLADDQPPILKAFSTIIHSRDTMRVVATAANGAEAINACMSHNVDVVVMDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           ++         F              + +     D       
Sbjct: 63  ITAARAILARH-----PRIRIVM---LTTFDDPTLVREALTAGVHGFLLKDADPEIFLTA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++      ++     +      S +   G    +T RE++ L  +++G T+
Sbjct: 115 IEAIHSGESVLASGVTKQVIDTFRHAYGSDLSPEQRQG-LSLITRREMDVLLCVAQGLTN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI+  LGI+  TV  +I +++ K   + R   + +  +  ++
Sbjct: 174 AEISADLGIAETTVKTHITALLAKVHARDRVALVLFVHKAGLL 216


>gi|315180871|gb|ADT87785.1| response repressor in two-component regulatory system with UhpB
           [Vibrio furnissii NCTC 11218]
          Length = 202

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 57/232 (24%), Gaps = 37/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+VL  +     S  + L      +  +            +                  
Sbjct: 2   INVVLVDDHVIVRSGFAQLLNLESDIQIVGEYGSVAEARRHL---------------PGC 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +    L+  +                 +   V  +            
Sbjct: 47  HADVVILDISMPDESGLTLMAEIPS-----------AIAVVMLSVHDSPAMVEKALELGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +      G  +  D            A    +      +  +LT
Sbjct: 96  RGYLSKRCSPEELVQAVRTSANGGCYLTPD-----------IALRLATPKKAAVQADQLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    ++EG     +A  LG+S  TV+ + A+ M K   K        
Sbjct: 145 KREKEVCRMLAEGLDVKTVAAQLGLSYKTVHVHRANAMDKLGVKNNVELAKL 196


>gi|301060037|ref|ZP_07200911.1| putative Transcriptional regulatory protein FixJ [delta
           proteobacterium NaphS2]
 gi|300445916|gb|EFK09807.1| putative Transcriptional regulatory protein FixJ [delta
           proteobacterium NaphS2]
          Length = 208

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 32/223 (14%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSD 81
           D    +  +D   S    +  L    G                  D+     LD  +   
Sbjct: 3   DRKPIVYVVDDDPSVRRALERLLRSTGHEARTFASALDFIDYEHPDVPGCLVLDVRMPKL 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              DL   +          V+        P      +++    G    +    F+   + 
Sbjct: 63  NGLDLQDLLIKKGNSI--PVIFITGHGTVP------DSVRALKGGAVDFLQKPFEDGDLL 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +                       ++    K   +   +   LT RE E   ++  G 
Sbjct: 115 EAVSRGIENH---------------RHERRKQKEMKILRARLNTLTPREREVFGFVISGM 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            + +IA  LGIS  T+  + A +M+K    + +  + +A +  
Sbjct: 160 LNKQIAYDLGISEKTIKVHRAKVMQKMGAGSLADLVRFAEKLG 202


>gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   +   P                   GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   +L    LLA    +  +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++IVL  +     + +  +      +  +  +        R+      +G    +++   
Sbjct: 2   IDIVLADDHPVVRAGIRAVVESQPDMRVVAEVSTAEELVRRVR-----LGVDADVVLCDL 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    L          +  R +  +              L    + T  + +       
Sbjct: 57  RFGPDGLG-------GAEATREIVAAGGPP---------VLILTTYDTDADILAAIEAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       +                       LT
Sbjct: 101 RGYLLKEAPTEELAQAIRAAAAGEVALGPAVQRRL-------------LGRMRSPGLALT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G+++D++A  L +SR TV  ++A +  K    +R+ A+A A +  ++
Sbjct: 148 RRELEVLELVARGRSNDDVARELFLSRATVKTHLAHVYDKLGVDSRTAAVAVARQRGLL 206


>gi|152981504|ref|YP_001353304.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281581|gb|ABR89991.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 231

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 77/244 (31%), Gaps = 24/244 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E   +++V+  +D    + +S +            +       +   A T   G     L
Sbjct: 9   ESLPIHVVIVEDDPGFRAALSKV------------VQDAPDMHLSGSAGTRAEG---LAL 53

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           ++        +D  +      D+++  A        +++          F      +   
Sbjct: 54  LQGAPADVLLVDLGLPDGSGIDVIK--AAVLLWPSCSIM------VSTNFGDETHVMRSI 105

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGK 182
                 Y        R+   +  +   G  I      + +           +        
Sbjct: 106 ESGAAGYLLKDSSPTRMIDEIRSIASGGSPISPIIARQILARFRTSAPVTTEEQAPAEDN 165

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E L +IS+G T+ EIA ++ +S  TV  ++  I  K    +++ A+  A  
Sbjct: 166 SALLSTREREVLDFISKGFTTQEIAKLMQLSHFTVRTFVRRIYSKLKVTSKAEALYEART 225

Query: 243 NNIV 246
             ++
Sbjct: 226 QGLL 229


>gi|306818819|ref|ZP_07452541.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
 gi|304648505|gb|EFM45808.1| two component system response regulator [Mobiluncus mulieris ATCC
           35239]
          Length = 189

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 13/194 (6%)

Query: 54  EYVGAS---HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           E VG        LV+        +D  +      +  R +                 +  
Sbjct: 2   EGVGFDGHHVLDLVQKHHPDVVLMDVEMPKMDGIEATRQIKER--------FPNLGVIML 53

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
             F              + + +     A +   +  +   GR +    L  +  +A Y+ 
Sbjct: 54  TNFRHDTWLKEALEAGADGFLTKDAPRADLSAAIKRVAKGGRFMSTKPLNML--IANYED 111

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             F     +      L+  E +    + +GK + +IA  L    +T+  ++ SIM+K   
Sbjct: 112 PNFIPDPKYTAGKQALSPAERDVWQEVLKGKGNAQIAKTLHSQESTIKTHMTSIMQKFQV 171

Query: 231 KTRSGAIAYAVRNN 244
           + R+  + ++ +N 
Sbjct: 172 RFRAELLVFSAKNG 185


>gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 202

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + +   G      V          D  +     
Sbjct: 4   RIVVADDQALVRGAIAMMLDLEEDIEVVAQAGNGREAIEAVACGDVDVVLADVEMPVMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           ++         F              + +         +   
Sbjct: 64  IAAASRIRKEH-----PDVKILMVTT---FGRPGYLRRAMEAGASGFVVKDAPSDSLASA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++  D   E                        LT RE + L   S+G T+
Sbjct: 116 VRKVMAGQRVVDPDLAAE----------------SLAASSNPLTEREQDVLRATSDGGTT 159

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++  L +S+ TV NY++S + KT  +TR+ A+  A  N  +
Sbjct: 160 ADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIARDNGWL 202


>gi|27802474|gb|AAO21112.1| TraR [Rhizobium leguminosarum bv. viciae]
          Length = 234

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 22/228 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            + +     G   F  ++ +  + +       + +P +       ++ 
Sbjct: 12  IEAAHNERMIKSALKSFANTYGFERFAYLQTEGAEVRA-----FNSYPEEWQDIYLGNQY 66

Query: 96  DKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRI 142
            +   V+                             +     G+ +             +
Sbjct: 67  SRIDPVVTEAKRRMEMFSWTANDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTM 126

Query: 143 GLMLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            L          G  +   +     +LA +      +          L+ RE  CL W +
Sbjct: 127 MLTFASSRQTADGSKLRDAQKAIQAVLAIHYRLKIIAATTIVAPKRLLSPREAMCLMWAA 186

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GK++ E A++ GI+  TV +Y+     K    T    +A A  + +V
Sbjct: 187 RGKSAPETAMLTGINPRTVQHYLDKAREKLEAATVPQLVAIAKDHGLV 234


>gi|296141810|ref|YP_003649053.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029944|gb|ADG80714.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 216

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 66/235 (28%), Gaps = 31/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  + E     ++ L T       +           R+ A+                
Sbjct: 3   TVFLVDDHEIVRRGLADLLTSDGRHRVVGEAATVREALARIPAVA--------------- 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            Q   +D  +      DL+R +          VL          +      +        
Sbjct: 48  PQVAVVDVRLPDGSGIDLIRTLRDQHPRLPCLVL--------TSYSDDEALLDAITAGAQ 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELT 187
            Y         +   +  +   G ++                   +  D         LT
Sbjct: 100 GYVLKQIRGTELVSAIATVAAGGSLLDSASTAR-------VLQRIRDADRVPSLAQAGLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           G+E   L  + EG T+ +IA  + ++  TV N++  ++ K   + R  A   AV+
Sbjct: 153 GQEEAVLELLGEGLTNKQIAERMFLAEKTVRNHVTGVLAKLGVENRVQAALRAVQ 207


>gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 214

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 62/221 (28%), Gaps = 15/221 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
                 D       +   V        +  Y  A    L          LD  +      
Sbjct: 6   RALVVEDHPLYRQAVTSLVDGMEGWQVIGSYADAEA-ALPHVTSADLVVLDLGLPGVDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +       +              L   +    P          + Y     +   I   L
Sbjct: 65  EATGLFKSAN--------PSLAILVLTMSEETPVLTAAVRAGASGYLVKGSEPEDIERAL 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +        +   A       ++          L+ REVE L  I+ G+++ 
Sbjct: 117 RAVARGQVVFGEQVAAAVLAQAGR-----RTTVASVSAFPLLSAREVEVLDLIAAGRSNA 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA  L +S  T  N+++SI+ K    TR+ A+A A    +
Sbjct: 172 EIAASLVVSPKTAKNHVSSILTKLGC-TRTEAVARARDAGL 211


>gi|295134050|ref|YP_003584726.1| two-component response regulator [Zunongwangia profunda SM-A87]
 gi|294982065|gb|ADF52530.1| two-component response regulator [Zunongwangia profunda SM-A87]
          Length = 214

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 37/242 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           NI++  + +     +  +  + D L  +            +             + + + 
Sbjct: 6   NIIIADDHKMFVDGLRSILEQEDDLHILHTTSTGEEVLKYLK------------INQNEQ 53

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-- 126
                 D  +       L + +           ++              E+      +  
Sbjct: 54  IDLLITDLNMPGMDGIALNKNIKKDF-----PGIKTLVISML-------EDGAKIKSLTE 101

Query: 127 --DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y S   +   +   +  +             +  L+ +   +   S       + 
Sbjct: 102 DEVNGYLSKNAEQKELLKAIRQILLGENYFSTHI--QSILIQSLTNSRKAS-------EI 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I++  T+ EIA +L +S++T+ +Y  +++ K   +  +G   YA+ +N
Sbjct: 153 RLTQREKEVLQLIAKEHTTQEIADMLFLSKHTIESYRKNLINKLEVRNLAGLTRYAIEHN 212

Query: 245 IV 246
           +V
Sbjct: 213 MV 214


>gi|239942882|ref|ZP_04694819.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989342|ref|ZP_04710006.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 216

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 65/229 (28%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V         L  ++     +        +    G      VR        LD  
Sbjct: 2   IRVAVVDDEQLVRSGLKLILGAAPDIEV------VACCDGIDAVGRVRELRPDVLLLDIR 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       ++R +              P       F                        
Sbjct: 56  MPEVDGLTVLRQVGTL--------TAPPAVAMLTTFDAARHIDDALRSGAVGLLMKNTAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   + +L   GRI+  + +  +                   +   LT RE + L  +
Sbjct: 108 EQLVHAVRVLAAGGRILAPEAVGPV----IEGYLAAGRDSGAADRTGALTDREGQVLALV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G ++ EIA  L +S  TV ++++S++ K     R  A   A R  ++
Sbjct: 164 GAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 212


>gi|256375752|ref|YP_003099412.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920055|gb|ACU35566.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 214

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 70/238 (29%), Gaps = 28/238 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +VL  ++ Q    +  L      +  +       +    + A               
Sbjct: 2   PVRLVLADDEPQLRRGLRVLLEADGRVEVVAEAGDGAALLSAVRATA------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +        +R +      +       P       F       T     
Sbjct: 49  --PDVALVDVQMPGTDGLSALRVL----LGRPDP----PAVAVLTTFDLDDYVATALDVG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +     +   +   ++ L   G ++       +  L   +A      +        L
Sbjct: 99  AQGFLLKDAEPEALVRAVLDLAAGGAVLDPRIAARL--LPRLRAGRLLRPNPQLDA---L 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE + L  +S+G  +  IA  LG+S  TV +Y+++++ K   + R  A   A +  
Sbjct: 154 STRERQVLELLSDGLPNAAIATELGLSEATVKSYVSTVLMKLGVENRVQAALAAHQVG 211


>gi|332188808|ref|ZP_08390518.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
 gi|332011161|gb|EGI53256.1| sigma-70, region 4 family protein [Sphingomonas sp. S17]
          Length = 239

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 13/221 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV-SSDWPFDLVRCMALSE 94
           +       +    + A     G   F++       +  +D I+      F     +  + 
Sbjct: 16  IEHSMDAETLHATVRAYAAPFGYGRFVIYTAPPPGDGAVDRILWLEGDWFGNGHRVNAAT 75

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPP---------AGMDNRYCSLTFDVARIRIGLM 145
                 V +   E   P F T                     +      F    +   + 
Sbjct: 76  YLARCPVNRHVLETDRPFFWTKNGTADAETYRVVPHPKGPGIHGLQVPIFSHVGLAGAVS 135

Query: 146 LLFP--KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
                    I  R  L  +G  A + A       V      +L+ RE E + WI+ G+  
Sbjct: 136 FGGRTIDSAIDTRLALTLVGTAAFHVAERLA-GSVVAHAMPQLSAREREVIRWIASGRRQ 194

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++A +LG+S  T+ N++  I  +    + + AI   VR+ 
Sbjct: 195 ADVAALLGLSERTIENHLRRIRNRLGAASTAQAIHLLVRSG 235


>gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 886

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            P   +  +  L  D     +  +L   + ++        IG +        K+ D    
Sbjct: 764 LPEAYEAGFLRLFVD-EGPPLAFILCRLEKKVTNSFLREYIGKILTLI--EKKASDAGSC 820

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   L+ RE+  L  ++ G T+ EIA  L IS  TV  +  +I +K   K R+ A+  A 
Sbjct: 821 KPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKNRTEAVVKAN 880

Query: 242 RNNIV 246
            + I+
Sbjct: 881 ISGII 885


>gi|218231951|ref|YP_002366521.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
 gi|218159908|gb|ACK59900.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264]
          Length = 229

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 22  ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 81

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 82  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 132

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 133 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 187

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 188 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 222


>gi|50842431|ref|YP_055658.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
 gi|282854109|ref|ZP_06263446.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|289425344|ref|ZP_06427121.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289427195|ref|ZP_06428911.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295130507|ref|YP_003581170.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|50840033|gb|AAT82700.1| two-component system response regulator [Propionibacterium acnes
           KPA171202]
 gi|282583562|gb|EFB88942.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|289154322|gb|EFD03010.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289159664|gb|EFD07852.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375438|gb|ADD99292.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313764546|gb|EFS35910.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772415|gb|EFS38381.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792235|gb|EFS40336.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801816|gb|EFS43050.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313807425|gb|EFS45912.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313809933|gb|EFS47654.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813029|gb|EFS50743.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816088|gb|EFS53802.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818471|gb|EFS56185.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820234|gb|EFS57948.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313822957|gb|EFS60671.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313825115|gb|EFS62829.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313827684|gb|EFS65398.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313834065|gb|EFS71779.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313838642|gb|EFS76356.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915542|gb|EFS79373.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918335|gb|EFS82166.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919990|gb|EFS83821.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314923083|gb|EFS86914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314925295|gb|EFS89126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932003|gb|EFS95834.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955872|gb|EFT00272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958353|gb|EFT02456.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314960092|gb|EFT04194.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314962893|gb|EFT06993.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314966852|gb|EFT10951.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314968029|gb|EFT12128.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314973270|gb|EFT17366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975945|gb|EFT20040.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314978298|gb|EFT22392.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314981194|gb|EFT25288.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|314984036|gb|EFT28128.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987799|gb|EFT31890.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990021|gb|EFT34112.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078108|gb|EFT50159.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080738|gb|EFT52714.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315084408|gb|EFT56384.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315085748|gb|EFT57724.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315088834|gb|EFT60810.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315091766|gb|EFT63742.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315093227|gb|EFT65203.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315096183|gb|EFT68159.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098444|gb|EFT70420.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101198|gb|EFT73174.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315103269|gb|EFT75245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315105475|gb|EFT77451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|315108420|gb|EFT80396.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326099|gb|EGE67889.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327330806|gb|EGE72552.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327332030|gb|EGE73767.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327443233|gb|EGE89887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327446018|gb|EGE92672.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448003|gb|EGE94657.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327450873|gb|EGE97527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327453050|gb|EGE99704.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327453779|gb|EGF00434.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328753560|gb|EGF67176.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328754292|gb|EGF67908.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328754455|gb|EGF68071.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328760399|gb|EGF73967.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
 gi|332675343|gb|AEE72159.1| transcriptional regulatory protein YfiK [Propionibacterium acnes
           266]
          Length = 223

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L    S    M  + +   G     LV   L     +D  +     
Sbjct: 4   RLVVTDDHPIMRQALAGYFSRVEEMEVVGQATNGREAVELVDQLLPDVVLMDLKMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F      +         Y     +   +  G
Sbjct: 64  LTATRMIVSRH--------PSVRVVALTTFARRDIVVEAILAGAAGYLLKESEPEAVIAG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    +  + +                 +L+  + + L  ++EG ++
Sbjct: 116 VRAVMAGQVTVSPEIARGVVEVFS-ARPCGGGSHQIDLTPVKLSDADDDVLKLLAEGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S + V   +  + +K   ++R   +  A    +V
Sbjct: 175 AAIADELCLSESAVKQRLGHLAKKLGVRSRLEVLVRACELGLV 217


>gi|30019876|ref|NP_831507.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228920546|ref|ZP_04083891.1| Response regulator [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228952218|ref|ZP_04114309.1| Response regulator [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229043592|ref|ZP_04191301.1| Response regulator [Bacillus cereus AH676]
 gi|229109295|ref|ZP_04238894.1| Response regulator [Bacillus cereus Rock1-15]
 gi|229127162|ref|ZP_04256159.1| Response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144451|ref|ZP_04272856.1| Response regulator [Bacillus cereus BDRD-ST24]
 gi|229150040|ref|ZP_04278265.1| Response regulator [Bacillus cereus m1550]
 gi|296502434|ref|YP_003664134.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29895421|gb|AAP08708.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228633478|gb|EEK90082.1| Response regulator [Bacillus cereus m1550]
 gi|228639082|gb|EEK95507.1| Response regulator [Bacillus cereus BDRD-ST24]
 gi|228656278|gb|EEL12119.1| Response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674305|gb|EEL29550.1| Response regulator [Bacillus cereus Rock1-15]
 gi|228725814|gb|EEL77062.1| Response regulator [Bacillus cereus AH676]
 gi|228807489|gb|EEM54017.1| Response regulator [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228839176|gb|EEM84472.1| Response regulator [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296323486|gb|ADH06414.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 212

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|75763478|ref|ZP_00743197.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896774|ref|YP_002445185.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
 gi|74489035|gb|EAO52532.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218541910|gb|ACK94304.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842]
          Length = 223

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 16  ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 75

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 76  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 126

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 127 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 182 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 216


>gi|209521331|ref|ZP_03270047.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209498247|gb|EDZ98386.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 218

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L     +   +            +   +              
Sbjct: 3   LRILIVEDHAVVRQGVRQLLLDRRIAREVAEAQSGSEALEAVVRQS-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           +          +      +       
Sbjct: 49  -FDVVLLDISLPDMNGVEVLKRLKRK-----APRVAVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y S T D A++   +  +    + +  +    +          + S+D       +L+
Sbjct: 100 SGYLSKTVDAAQMIGAIQQVAAGRKYVSPEMAEALA--------DYVSFDGEQLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y   ++ K   +  +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIAATLSLSVKTVSVYRTRLLDKMKLRNNAELTFYVMSNRLV 210


>gi|160879008|ref|YP_001557976.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427674|gb|ABX41237.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 216

 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 14/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V       ++LA+++  + +   T  +       G     L          LD  
Sbjct: 2   IRIAIVEDQSLLREMLAKVLSQEESFVVTGSLG-----DGRDVIKLCEETNPDVILLDIK 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +      +  +                 +    F          A   + Y       
Sbjct: 57  MPNMDGIHALSKIKERFPKIKC--------IMLTTFEEEKFIYPALAYGADGYILKDIKP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  ++    ++  D + E  LL   +++          K+ E    +++ L  +
Sbjct: 109 DVLIHMIQSVYDGLFVV-HDSIKEYILLQMQRSSNEYKKISLSTKELEFDSTDLDVLKLL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + GK++ EIA  +  S  TV N I+ ++  T TK R+    +A++++++
Sbjct: 168 TRGKSNSEIASEICYSEGTVKNRISRMLEMTGTKDRTQLAIFALQSSVI 216


>gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
 gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14]
          Length = 230

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMA 91
           L  +       +    ++ +   +G    L+       ++    +   +           
Sbjct: 4   LLELERARSLDAVGAVLHGIAAPLGYDRVLVFATGTGLKRGTQRVYWINGDWLGEGSDTD 63

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPA---------GMDNRYCSLTFDVARIRI 142
           L+       V +   +   P F +  + +                +      F    +  
Sbjct: 64  LAGYLHACPVNRHVLDSDAPFFWSKRQGLRGERYQVVKQPRGEGLHGLQVPVFGTTGLEG 123

Query: 143 GLMLLFPK-GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            +                 E    AA++A    +          L+ RE E L W++ G+
Sbjct: 124 AISFAGTSIDASASARLQLEAAATAAFRAARRLAEVPAALSGSLLSTREREVLRWVAAGR 183

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              EIA  LG+S  TV N++    ++    T + A+  A R  
Sbjct: 184 RQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRG 226


>gi|328755742|gb|EGF69358.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
          Length = 206

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 60/233 (25%), Gaps = 29/233 (12%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R             LA ++ ++  +          E VG          L Q+
Sbjct: 1   MIDKTPIRLVLADDQTLVRGALAALLGMEDDLEIVGTCGRGDEVVG----------LVQD 50

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D  +       L      +E             L    F                + 
Sbjct: 51  TYADVCLLDIEMPGLDGITVAAELRDQAP---WCRILIVTTFGRPGYLRRAMDAGVAGFL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   +  +   GR I      E                        L+GRE 
Sbjct: 108 VKDTPAEDLAQVVRKVHAGGRAIDPALAAE----------------SLIEGHNPLSGRER 151

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E L     G +   IA  L +S  TV N+++S + KT    R+ A   A R  
Sbjct: 152 EILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204


>gi|67921004|ref|ZP_00514523.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67857121|gb|EAM52361.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 231

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 12/225 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +        +T   G   F LV+         D  +     + 
Sbjct: 5   ILVADDDLGIRVAVKDYLEMHGY-GCITAQNGEDAFSLVQTYRPHLLISDIKMPRKDGYT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+ +            +    +F     T    I       + Y    F++  ++  + 
Sbjct: 64  LVKELRQL------PEFRLLPVVFLTECSTTESRIQGYQVGCDVYLPKPFEMDELKAVIR 117

Query: 146 LLFPKGRIILRDRLWE----IGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEG 200
            L  + +II  +  +     +      Q        +    +F ELT RE E L  ++ G
Sbjct: 118 NLLERSQIIQSEWRFSQNKSVNQNTPQQQQQAAKISIQAEIEFFELTRRESEVLDLLTMG 177

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ EI   L +S  T+  Y++S++RKT T  R+  + +A  +++
Sbjct: 178 LSNGEIGQRLHLSPRTIEKYVSSLLRKTDTSNRAELVRFAFDHHL 222


>gi|89899702|ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89344439|gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 217

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 75/242 (30%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V ++L  +     + +  L             +             E VG +   L 
Sbjct: 1   MKPVRVLLADDHTLVRAGLRKLL------------ESMPDV--------EVVGEAADGLA 40

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L  E +   ++       L    A +   K +  ++                     
Sbjct: 41  LLALAAELQPQLVMMDIAMPGLNGLEATARLAKAWPTIRVLILSM---HQNEEYVRQALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         + + L  +      +       +       ++  +          
Sbjct: 98  NGAAAYLLKDCAPLELELALKAVLRGETYLSPAVSKGV------VSDYVQRLRGEAQPGA 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+ E L  I+EG+++ EIA  L ++  TV ++ + +M++      +G + YA+   
Sbjct: 152 QLTPRQREVLQLIAEGQSTKEIARRLDLAVKTVESHRSQLMKQLDIHEVAGLVRYAMHVG 211

Query: 245 IV 246
           +V
Sbjct: 212 VV 213


>gi|269955567|ref|YP_003325356.1| LuxR family two component transcriptional regulator [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304248|gb|ACZ29798.1| two component transcriptional regulator, LuxR family [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 221

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 64/244 (26%), Gaps = 25/244 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+       + L  +D    + +S +      L  +                    G + 
Sbjct: 1   MDTLAAVTTVALVDDDALVRAGLSLILGGDPELRIVGEAAD---------------GVAA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LVR +      +D  +         + +  +          R   +    F      +
Sbjct: 46  IELVRRERPDVVLMDIRMPRLDGLAATQRLVAAGT--------RSRIIVLTTFDADAMVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +        R+   +         +       +  +A+   +         
Sbjct: 98  EALQAGAAGFLLKDTPPERLVAAVHAAAAGEPTLSPTVTASL--IASVAGSDGGRRVQAV 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +LT RE E    +  G ++ EIA  L +   TV  +++ ++ K   + R       
Sbjct: 156 QRLADLTEREREVAVAVGRGLSNTEIAASLYMGVATVKTHVSRVLAKLGVENRVQVAILV 215

Query: 241 VRNN 244
               
Sbjct: 216 HDAG 219


>gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
 gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1]
          Length = 212

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 63/229 (27%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                    P   + LA         S        T   G +    +R        +D  
Sbjct: 4   ITVFIADDHPVYREGLA-----QNWESVPQIQVVGTAGDGKNALAAIRELKPDVAVMDLN 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       ++  +   +      VL    +                      +       
Sbjct: 59  LPELDGMQVLETLFAEDSPTSVLVLTAYMDSTSVF--------RAFTHGARGFLEKAASF 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + I   ++ +   G II           A               +   L+ RE+E L   
Sbjct: 111 SEITDAVLQIGAGGTIIAP--------FAQDVLARELRTRQDTAERPVLSPREIEILRLA 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G +  +IA  L IS  TV  ++  I  K     R+ A+A A+R   +
Sbjct: 163 ADGYSGQKIASELHISLATVKTHLQHIYDKLDVSDRASAVAQAIRRGFL 211


>gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 214

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   + ++  GL  +      + R     +  L  Y       + V    + ELT 
Sbjct: 102 GIFGPNDSMEKLCQGLSAIISGENWLSR---RLLDQLVNYYKGKEVHHVVEPAIEVELTR 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           REV+ L  + EG ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 159 REVQVLQMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATSWAKRN 213


>gi|46205763|ref|ZP_00210019.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 217

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 61/228 (26%), Gaps = 15/228 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         + R++     +             GA    L R        LD  
Sbjct: 2   IRVVVVDDEALLRAGIVRLVDTAPDLDVVGE-----GGDGARAVELARELDPDALLLDMR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +  +             R   +    F      +         Y       
Sbjct: 57  MPVMDGLDALVAIHRER--------PRTAVVVLTSFLADEYVLPALRAGAAGYLLKDSTP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  G+        I+         LLAA   +          +   L  +E E +  +
Sbjct: 109 EELHHGIRAAVAGDSILSPAVAR--HLLAAAGGDGTARRADARRRLARLAPQEQEVVAAL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G ++ EI   L ++ +TV  Y+A  M K  T  R+     A    +
Sbjct: 167 AGGLSNAEIGRRLFLAESTVKAYLAHAMTKLGTTNRTQTAILAHEAGL 214


>gi|327438849|dbj|BAK15214.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Solibacillus silvestris StLB046]
          Length = 217

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +  + +  D    +     T      +   T              
Sbjct: 1   MKILLVDDQAIIRRGLISILSSDDKSEIISEASNTKEALEMLQKET-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  V  +    L+           + +L      F   + +    +       
Sbjct: 47  -PDLAIIDFQVGDECGLKLINEARKLGCTCKFAIL-----TFSKDYDSFQRAMAMD---V 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y SL      +   + ++    +    D + ++           K   +   +   LT
Sbjct: 98  VGYISLNSHPEELIYAIQIIQKGRKYYDPDLIDKLI-------QTQKESSIDDSRLALLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E E +  +  G ++ +IA  L IS NTV  +++ ++ K     R+    +A    +V
Sbjct: 151 TKEKEVMQKLGMGYSNKQIAHSLYISENTVKKHVSQVLSKLELGDRTQVALFANETGLV 209


>gi|307296696|ref|ZP_07576515.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877825|gb|EFN09050.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 253

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
              +        + A    +G   F L+     +     S+  + +P   +  +      
Sbjct: 22  QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQSLFLTTYPSAWLEEVLEERHY 81

Query: 97  KYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIRIG 143
               +          +                   +      + + Y             
Sbjct: 82  IEDPIHAACARTPSGLAWDRVGDVLELTPRQRGILDRARDHDLASGYSLPIRTPGEPEAI 141

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEG 200
                 +   +  + +    LL +   +  +              L+ R+VEC+  +++G
Sbjct: 142 FTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIALVAQG 201

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           K+  EI  ILG+SR+TV+ Y+ S  R+   + R+  +  AVR+ 
Sbjct: 202 KSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 236

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 90/221 (40%), Gaps = 12/221 (5%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA------ 91
            L      T     LT  +GA  ++LV     Q++    IVSS+W FD +  +       
Sbjct: 16  RLTSRGDLTSFFMQLTAEIGADSYMLVAIVHDQDRNDARIVSSNWIFDAIELIGKRLIAG 75

Query: 92  -LSEKDKYYNVLQR--PTELFCPVFHTL---PENITPPAGMDNRYCSLTFDVARIRIGLM 145
                      ++         P    L    E             SL  +V R R+  +
Sbjct: 76  LAQGALTVAPGIRPQPLVASRAPEADGLVTGEEARLLDVLGHAEIYSLRLNVGRQRLFAL 135

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                   I +  L    L   Y  +              L+ RE ECL W+SEGKT+DE
Sbjct: 136 FSAATAGSIDQPALMRAQLKCCYALSHIPQLIAAAAMQDPLSDRERECLFWVSEGKTTDE 195

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +AVILG+S NTVN+YI   ++K A   R+ AIA A+R+ I+
Sbjct: 196 VAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 236


>gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 71/216 (32%), Gaps = 12/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +     M  +    G S  L ++        LD+++     F+
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYM-VMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFE 71

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +          VL      F          +         Y         +   + 
Sbjct: 72  TCRQIKQQPDASNIPVL------FMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVA 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                 R +   R           A   +         F+LT REV+ L W++ GKT+ +
Sbjct: 126 SHLRTARTLQSARSTSQPPGINDAAAYPR-----LSSSFQLTEREVDVLRWVACGKTNKD 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           IA IL +S  TVN ++  I  K   +TR+ A + A+
Sbjct: 181 IADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|148998533|ref|ZP_01825974.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|168576597|ref|ZP_02722463.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|307068610|ref|YP_003877576.1| CheY-like receiver/HTH DNA-binding domain-containing response
           regulator [Streptococcus pneumoniae AP200]
 gi|147755726|gb|EDK62772.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|183577636|gb|EDT98164.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|306410147|gb|ADM85574.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Streptococcus pneumoniae AP200]
          Length = 199

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDITILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +     +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRSERLETKVVVV--------TTFKRAGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|325964344|ref|YP_004242250.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470431|gb|ADX74116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 226

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 53/206 (25%), Gaps = 15/206 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHF-----LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           LD        +  L E  G          +         + D  +      D        
Sbjct: 20  LDDHELVRYGLRDLLEAEGMQVAGESGSAVEAIRRIPALRPDVAILDGRLGDGTGIEVCR 79

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           E       +     +    +                Y         +   +  +     +
Sbjct: 80  EVRAIDPGISC---IILTSYDDDQALQGAVLAGAAGYVLKQIGNNDLAGAIRRVARGESL 136

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                            N          +   L+ +E + L  + +G T+ +I   L ++
Sbjct: 137 FAPGVK-------ERALNGLLEAAPVDPRLESLSLQERKVLALVGQGMTNRQIGQELFLA 189

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239
             TV NY+++++ K   + R+ A  Y
Sbjct: 190 EKTVKNYVSAMLAKLGFERRTQAAVY 215


>gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 236

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 96/239 (40%), Gaps = 15/239 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S  + L     L +R+         T     LT  +GA  ++LV     Q++    IVS
Sbjct: 1   MSSPAALLQSDTLGSRL---TSRGDLTSFFMELTAEIGADSYMLVAMVHDQDRNDARIVS 57

Query: 80  SDWPFDLVRCMALSEKDKYYNVL---------QRPTELFCPVFHTL---PENITPPAGMD 127
           S+W FD +  +                     +       P    L    E         
Sbjct: 58  SNWIFDAIELIGKRLIAGLAQGTLTVAPGTRPRPLVAAQAPDADGLVSGEEARLLDVLGH 117

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               SL  +V R R+  +        I +  L +  L   Y  +              L+
Sbjct: 118 AEIYSLRLNVGRQRLFALFSAASAGKIDQPALMKAQLKCCYALSHIPQLIAAAAMQDPLS 177

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE ECL W+SEGKT+DE+AVILG+S NTVN+YI   ++K A   R+ AIA A+R+ I+
Sbjct: 178 DRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGII 236


>gi|332531136|ref|ZP_08407050.1| LuxR family two component transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332039421|gb|EGI75833.1| LuxR family two component transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 209

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
            +    D       +  T++ T+ +  + E    S    L+R        LD  +     
Sbjct: 3   RVILCDDHAVVRRGIRDTLAETVDIQIVGEAGSYSEVRELLRTVPCDVLVLDLNLPGRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +++  +  +        ++       P        I         Y +   + A +   
Sbjct: 63  LEVLASLRET-----DTQIKVLVVSMFP---EDQYAIRCLRAGAQGYLNKAGNPAEMVTA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + +  D    +        +   +       +  L+ RE++ L  I+ GK  
Sbjct: 115 VRTISQGRKYVTPDVAQML-------VDNLATPSTEALHNS-LSERELQTLLKIASGKRL 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y + ++ K      +    YA+RN +V
Sbjct: 167 SDIAEELMLSPKTVSVYRSRVLEKLKLANNAELTVYAIRNGLV 209


>gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 265

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 71/235 (30%), Gaps = 27/235 (11%)

Query: 39  LDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSIVSS----------DWPFDL 86
           +               + G                + +D ++ S           +P + 
Sbjct: 23  MLDYAETQRIARVSYHHHGFDEKWGAAAANPTTLRRAMDDVIVSATPRFHIIAHGFPREW 82

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-------------PAGMDNRYCSL 133
           V         +   +         P   +    +T              PA + +     
Sbjct: 83  VDIYVDDHLYEIDPIPALAQRRAVPFLWSEVAELTRLAEEQAAFLERSMPARVGDGVAIQ 142

Query: 134 TFDVARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREV 191
            F        + M    + R +   +L E  L++               +    L+ RE 
Sbjct: 143 VFGPNMRHGYVGMGFGDRPRDVTAPQLAEYQLVSQLMHLRACRLIEERNRSEIALSARET 202

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L W++ GK+   IA ILG+S +TV+  +  I RK     R+ AI  A+   +V
Sbjct: 203 EVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDRTAAILKAINLGLV 257


>gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 210

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 71/240 (29%), Gaps = 37/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            ++++L  +          +      +  +   +                G     L   
Sbjct: 5   PISVLLVDDHSLVRRGFRRMLEDDPAIVVVGEAED---------------GHQAVQLAGE 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   +D  + S       R +  +              L   +        T     
Sbjct: 50  LHPRVVVMDFAMPSMNGAVAARHILRTA--------PETAILILSMHAEASYVRTCLEAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +    +++ R  L  + L +                   L
Sbjct: 102 VRGYLLKNALDLEMVAAVKQVAAGKQVLDRR-LGALDLPSGAA-------------PAGL 147

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I  GK++ EIA +L +S NTV  + A+IM+       +  + YA+R  +V
Sbjct: 148 TTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHRANIMQTLGIHNTAELVVYAIRQGLV 207


>gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 215

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 79/214 (36%), Gaps = 17/214 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLV----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           R++ +D   +  + +    E+ G             +  +E   D I+      + +   
Sbjct: 11  RLMLVDDDPNLILLVKDYLEFRGYDVVTAENGREALEKLEEDLPDLIICDVMMPE-MDGY 69

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L +  +          LF        + +   +   + Y    F+   +   +      
Sbjct: 70  TLVKHVREDPRTSWIPVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQV------ 123

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                   L +   L  +Q N   S       ++ +LT  E++ +  +S+G  + +IA +
Sbjct: 124 -----ESSLKQATRLIRHQNNAIDSGPKIKARRNVDLTPTELKVVQLVSQGLANRDIADV 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + +S+ T+ +++++++ KT    R+    +A+ +
Sbjct: 179 MNVSQRTIESHVSNMLGKTGLHNRTELARWALES 212


>gi|294010459|ref|YP_003543919.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
 gi|292673789|dbj|BAI95307.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S]
          Length = 253

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 16/224 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
              +        + A    +G   F L+     +     S+  + +P   +  +      
Sbjct: 22  QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQSLFLTTYPSAWLEEVLEERHY 81

Query: 97  KYYNVLQRPTELFCPVFHTLPENI-------------TPPAGMDNRYCSLTFDVARIRIG 143
               +          +      ++                  + + Y             
Sbjct: 82  IEDPIHAACARTPSGLAWDRVGDMLELTPRQRGILDRARDHDLASGYSLPIRTPGEPEAI 141

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEG 200
                 +   +  + +    LL +   +  +              L+ R+VEC+  +++G
Sbjct: 142 FTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIALVAQG 201

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           K+  EI  ILG+SR+TV+ Y+ S  R+   + R+  +  AVR+ 
Sbjct: 202 KSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|228958121|ref|ZP_04119856.1| Response regulator [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228801638|gb|EEM48520.1| Response regulator [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 212

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGGEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|152964247|ref|YP_001360031.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151358764|gb|ABS01767.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 228

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 12/239 (5%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S V    + +  L  +            +  L         LL    
Sbjct: 2   IRVLVVDDHRMVRSGVRAELSGAQDLEVVGEAADVAGAVAAVERL----RPDVVLLDVHL 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                +  +  +      ++   A          ++        V     + I       
Sbjct: 58  PAGPDENPAPGAGSGGAQVLARSAA--LLSADPPVRFL---ALSVSDAADDVIAVIRRGA 112

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +     +        +       A    + D    +   L+
Sbjct: 113 RGYVTKAISGDDLAAAVRRVAEGDAVFSPRLAGFVLDAFGAGAGEVAAADDELDR---LS 169

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +  I+ G    E+A  L IS  TV  ++++++RK     R+    +A    ++
Sbjct: 170 AREREVMRLIARGYAYKEVAKELFISVKTVETHVSAVLRKLQLSNRNELTRWAAARRLL 228


>gi|320532007|ref|ZP_08032900.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135771|gb|EFW27826.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 203

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 64/231 (27%), Gaps = 29/231 (12%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R             LA ++ L+  +    ++       G      VR        +D
Sbjct: 2   SPIRVLIADDQALVRGALATLLGLESDLEVVAQVGR-----GDEVLEAVREHAVDVALVD 56

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +  SE      ++          F                +     
Sbjct: 57  IDMPGRDGLAATAEVVSSETSCRCLIV--------TTFGRPGYLSRSMEAGAVGFIVKDT 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +    R+I  +   E  LL                    LT RE E L 
Sbjct: 109 PPEALADAIRKVHAGLRVIDPELAQESVLLG----------------PNPLTDREKEVLL 152

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G  + EIA  L +   TV NY++S + KT  + R+ A   A  N  +
Sbjct: 153 AAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203


>gi|169627165|ref|YP_001700814.1| nitrate/nitrite response transcriptional regulatory protein NarL
           [Mycobacterium abscessus ATCC 19977]
 gi|169239132|emb|CAM60160.1| Possible nitrate/nitrite response transcriptional regulatory
           protein NarL (LuxR family) [Mycobacterium abscessus]
          Length = 215

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 67/246 (27%), Gaps = 32/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    + V +V+  +       V    T S  +  +   +                G   
Sbjct: 1   MQVSGELVRVVVGDDHPLFREGVVRALTASGQITVVAEAEN---------------GTGA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L+R        +D  +       +   +   E             L            
Sbjct: 46  LELIREHRPDVALVDYRMPELDGTQVAAAVRRDELP--------TRVLLLSAHDDAAIVY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    + S       +   ++       ++       +           +      
Sbjct: 98  RALEEGAAGFLSKESTRTELVGAVLDCARGRDVVAASLTAGLA-------GEIRKRAQPA 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE E L  I+ G+T   IA  L ++ +TV  ++  +  K     R+ A+A A
Sbjct: 151 GPS--LSTREREVLRMIAAGQTVPAIARALFLAPSTVKTHVQRLYEKLGVGDRAAAVAEA 208

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 209 MRRGLL 214


>gi|24213516|ref|NP_710997.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45658638|ref|YP_002724.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24194296|gb|AAN48015.1| response regulator containing a signal receiver domain and a
           DNA-binding domain [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45601882|gb|AAS71361.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 11/181 (6%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            ++     LD  +      + ++ +     +  Y +          VF    + +     
Sbjct: 57  LNIPDIVILDIGLPEKSGLECLKELKEKTPNTKYVIF--------TVFEDEEKIVEAIQE 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y             L ++   G  +      +   +        +S +        
Sbjct: 109 GASGYLLKDTSPELFLAELKVIVLGGAPLTPRIADK---IIRKFTKKEESKNQPIQNTLG 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+++ L +I+ G T  +IA  L IS +TV+ +I  I +K    ++S AI    R  I
Sbjct: 166 LTKRKLQILNFIALGMTVSDIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRMGI 225

Query: 246 V 246
           +
Sbjct: 226 I 226


>gi|227364555|ref|ZP_03848616.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325682330|ref|ZP_08161847.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|227070392|gb|EEI08754.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324978169|gb|EGC15119.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 223

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 35/243 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++          V +L  + D    +                 E  G    L      
Sbjct: 9   RVLVADNYPIIRMAVKNLVEQLDNFKVIAE---------------EATGIDASLRAEQGD 53

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAG 125
                +D  +              +       + +        +F +             
Sbjct: 54  IDIIIMDLAMP----------PGENGLITIKRIHEHFPNTKIIIFSSRNEPQYINQAIYN 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KD 183
             N Y   +     +   L       + +         ++      + K    H+     
Sbjct: 104 GANSYILKSSSPKELVHALRHAINGEKYLD-----NNIMVTKKDLLVIKGGSPHFDLGNY 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  I  G T+ EIA  + IS  TV  +   IM+K    + +  + YAV++
Sbjct: 159 VALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKH 218

Query: 244 NIV 246
            +V
Sbjct: 219 RLV 221


>gi|225018320|ref|ZP_03707512.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
 gi|224948920|gb|EEG30129.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum
           DSM 5476]
          Length = 206

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 69/231 (29%), Gaps = 33/231 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D      +  +      +A     +                G     L R  
Sbjct: 3   IRVILADDDPIICQGLRMILETQQDIALCGVAEN---------------GVQAVELCRTQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +    +           ++    L    F      +       
Sbjct: 48  RPDVVLLDIRMPLLDGIEAAAQIMQ---------MEAGAPLLLTTFDEAEFILRALKTGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        RI   +  +   G +  +D L  I           ++          LT
Sbjct: 99  RGYILKNSPAQRILTAVRAVAEGGTVFQQDILEYI---------RDRTVFPDHTIFSLLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            RE+E +  I+EG ++ EIA  L +S  TV N+I+ I+ KT  + R+    
Sbjct: 150 PREMEVVALIAEGLSNKEIAERLFLSNGTVRNHISVILEKTGLEHRTQIAV 200


>gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis
           transcription regulator protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 185

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 66/181 (36%), Gaps = 14/181 (7%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGMDNRYC 131
           +++         +    +    LQ   +   P+  +        L         ++  + 
Sbjct: 5   NNYDPQWNENYQIHNFVESDPTLQHGFKSNEPMLWSEDTFKDHTLLYGEMKKFNLNYGWL 64

Query: 132 SLTFDVARIRIGLMLLFPKGR------IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             ++  +  +  + L                 ++ ++  L     +   +    +    +
Sbjct: 65  QSSWYNSAAKGVVTLSRSTEAITLKELDAKEAKMSKLVRLTHACLSEIITLSPPYNPLEK 124

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ REVE L W+++GKT + I  +LG++  TV ++  +IM+K     ++ A   A    I
Sbjct: 125 LSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKAALLGI 184

Query: 246 V 246
           +
Sbjct: 185 I 185


>gi|262280464|ref|ZP_06058248.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258242|gb|EEY76976.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 216

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 67/230 (29%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIHETASVDEFYERLENGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPAIPIIVVSAHEETSII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    + L                 +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRQVLEGDIWLPPNLPSNLNL-----DPRAADETALAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|91781499|ref|YP_556705.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91685453|gb|ABE28653.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 218

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       V  L     +   +            +   +              
Sbjct: 3   LRILLVDDHAVVRQGVRQLLLDRGVAREVTEAQSGAEALDAVARFS-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      ++++ +           +          +      +       
Sbjct: 49  -YDVVLLDISLPDMNGVEVLKRLKRK-----APRVAVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T D  ++   L  +    + +       +          + S+D       +L+
Sbjct: 100 AGYLSKTVDATQMIGALQQVAAGRKYVSPAMAEALA--------DYVSFDGEQMPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IAV L +S  TV+ Y   ++ K   +  +    Y + N ++
Sbjct: 152 DREYQTLCMLASGKRLTDIAVALSLSVKTVSVYRTRLLEKMKLRNNAELTFYVMSNRLI 210


>gi|256376535|ref|YP_003100195.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920838|gb|ACU36349.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 221

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 62/239 (25%), Gaps = 30/239 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ +++  + E     +  L   +  L  +                    G        
Sbjct: 4   ERIRVLVVEDQEVAREALCALIGGTADLVLVGRARD---------------GREAVDAAV 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  R +           +     +    F            
Sbjct: 49  RLRPDVVLMDIRMPVVDGVEATRLVLAR--------VPAARVVVLTTFDCDEYVDRALRA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +  V  +   +        ++  +               + +          
Sbjct: 101 GACGFVLKSAPVVDVVRAVRAAHVGDSVLSPEVARR-------VVAGYAARPGGPTPFDV 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  RE E    ++ G +++E+A  L +S  TV  Y++ +  K   + R+  +  A R  
Sbjct: 154 LGVREREVAAGVARGLSNEEVAAELSLSLATVKTYLSRVFDKVGVRDRTQLVVLAYRTG 212


>gi|312960118|ref|ZP_07774630.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311285612|gb|EFQ64181.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 210

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 31/237 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  + +   + ++ +    D L  +   +                G    +  R    
Sbjct: 1   MLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLIKARELKP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +           +  S  D    V+              P            
Sbjct: 46  DVVLMDVKMPGIGGLGATTKLLRSHPDIKVVVVTVC--------EEDPFPTRLLQAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +    +A +   + L+F   R I      ++        +   + D  +     L+ R
Sbjct: 98  YLTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLA-----IKSFQPTSDSPFDA---LSER 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++    I   +    I+  L +S  TVN Y   I  K A  +       AVR+ +V
Sbjct: 150 EIQIALMIVGCQKVQSISDKLCLSPKTVNTYRYRIFEKLAISSDVELTLLAVRHGMV 206


>gi|300789062|ref|YP_003769353.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798576|gb|ADJ48951.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 65/223 (29%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D     + L   +     +    E   G     L+         +D  +     
Sbjct: 3   RVMIVDDQEMIRVGLRTMLEAHPDIEVAAEAGDGLLALRLLAKTPVDVVLMDIRMPGIDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +      +   ++          F              N +       A +   
Sbjct: 63  VETTRRIRRGHPAEEVRIV------VLTTFDHDENVFAALRAGANGFLGKGVGPAELTTS 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKT 202
           ++ +   G  +         L+     +     +    + FE LT RE+E +  +  G  
Sbjct: 117 ILEVAAGGGAL--TPAATAALIDHVARDAGSRPEPEIARLFETLTPRELEIVEAVVSGLD 174

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + EIA ++ +S  TV  +    M K   + R+  +  A R  I
Sbjct: 175 NAEIAALMSVSPFTVKTHANRAMTKVGARDRAQLVTLAFRAGI 217


>gi|91786783|ref|YP_547735.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696008|gb|ABE42837.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 210

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    S  + +  + E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLKQFFSDQVDLRVVGEAASGREAIDLVRNVELDILVMDLSMPGQSGIDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        +       + Y +   D + I   + ++
Sbjct: 67  AMIRAK-----APDVGILILSGYP---EEHYAVNLIRQGASGYLNKECDPSEIVDAIRVI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I       +        ++            +L+ RE +    +++G+T+ +IA
Sbjct: 119 SLGKRYITPAVAELLAQQLNRPHDVASHE--------QLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K +  + S    YA++N ++
Sbjct: 171 KALSLSVKTVSTYRTRVMEKMSLASNSDLTYYALKNKLI 209


>gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42]
          Length = 246

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
              +    +    +     +               +      V + +P   V    L++ 
Sbjct: 14  FSAMKNAATVAAALDEFQSHYPIDFVTFHLARTIVDNVDAPFVRTTYPDSWVSRYLLNDY 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFD-VARIRIGL 144
                +++       P      +          +        N       D   R  + +
Sbjct: 74  INVDPIIREGFSRQLPFDWREIDITETAQEFMVDAELHGIGTNGVSVPIVDKSRRSLLSI 133

Query: 145 MLLFPKGRIILRDRLWEIGLL-AAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGK 201
                     L +R +    L   +  +                L  RE+ECL W S GK
Sbjct: 134 NSQKSDEEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHWASRGK 193

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S +I  ILG+S +T   Y+ S   K    T S AIA+AV  N++
Sbjct: 194 DSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNLI 238


>gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 199

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++     V        L    G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTFQPDVD-----SVLQAKDGQEAIQLLEKESVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +   + +    V+          F              + Y      +A + 
Sbjct: 60  TGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAIKAGVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEAANIATESGWL 199


>gi|227497321|ref|ZP_03927553.1| possible response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833192|gb|EEH65575.1| possible response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 240

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 59/224 (26%), Gaps = 11/224 (4%)

Query: 25  HLPTRSDLLARMIPLDCTV-SWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDW 82
            L    D       +   + S    +  + E          V         LD  +    
Sbjct: 26  RLLVVDDHALVRAGVRAELTSHAADLEVVAEADDVEGAIAAVHALAPDVVLLDVHLPGGN 85

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                  +A          +     L   V     + +         Y +     A +  
Sbjct: 86  GGGGTEVVASCH------DVPATRFLALSVSDASEDVVGVIRAGARGYVTKAISTADLAQ 139

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +              +              D    +   L+ RE E +  I+ G T
Sbjct: 140 AVRRVAAGDAAFSPRLAGFVLDAFGAGTGEVAVADSELDR---LSAREREVMRLIARGYT 196

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E A  L IS  TV  ++++++RK     R+    +A    IV
Sbjct: 197 YKECASELFISVKTVETHVSAVLRKLQLSNRNELTRWAAARRIV 240


>gi|218529947|ref|YP_002420763.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218522250|gb|ACK82835.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 222

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       V+ L   S  +  +  ++                GA+ +  +   
Sbjct: 6   IHVVLADDHPVFRHGVTSLIADSGEIVVVASVET---------------GAAAYRAIVQH 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++R +A +          R   +   V+ +            
Sbjct: 51  EPDVAILDINMPEMNGVTVLRHLARTGT--------RTQAIMLSVYESRVYIDQAFEAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +  +   G  +         L      +   S  V       L+
Sbjct: 103 RGYVLKRSAFQNIASAVRAVHAGGIYLDP------ALPERTAPHRRLSSSVDEAACSTLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L +++ G TS E+A  LG +   +    A    K    +R+  + +A+    +
Sbjct: 157 ERERDILRFVAFGFTSKEVADRLGATPKAIETQKARACTKLGLASRAQIVQFAILQGWL 215


>gi|209519372|ref|ZP_03268170.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209500186|gb|EEA00244.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 217

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 60/220 (27%), Gaps = 17/220 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ L    D       L   +        + E   A   L +     + Q     +    
Sbjct: 9   IARLLLVDDHPLVRDGLRARLEAVRHFEVVGEAGDAQEALAL----AERQAPHLALMDVG 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               +  +AL+              L   +   L           + Y         I  
Sbjct: 65  MKSGMNGIALASLFHE--RFPAIRVLMLSMHDNLEYVTQAVRAGASGYVLKDSPALEIIQ 122

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +         +            +               LT RE + L  ++EG +
Sbjct: 123 AIGAVLDGKTFFSPE-----------LSARLIQASATQSPVERLTPRERDILDALAEGLS 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           S +IA    +S  TV  +  ++ RK   + ++  I +AV 
Sbjct: 172 SKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVE 211


>gi|255036722|ref|YP_003087343.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254949478|gb|ACT94178.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 219

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 69/244 (28%), Gaps = 28/244 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + +  + E        + +       ++          R+               
Sbjct: 1   MSTLKLGIADDHELFRKGFISMLSGIPDFEFILEAGNGQELLDRL--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  +                 +           +   +++     I    
Sbjct: 46  PANTPDIVFMDLQMPVMDGIQATEAAFERFPNI--------KIIVVSMYNEDRFVIHMLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG--LLAAYQANMFKSYDVHWGK 182
                Y         +   +  +  +G          +   ++           +     
Sbjct: 98  KGVQGYLLKDTSPDEVEKAIRRVHEEGFYYNDFVSKAMHRKMVNRQVNKHPFFPNAC--- 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE E L  I +G ++ EI   L IS  TV  +   ++ KT TK+ + A+A+A +
Sbjct: 155 NVALSSREKEVLQLICDGLSTTEIGDKLFISVRTVEGHRLRVLEKTGTKSTAAAVAFAYK 214

Query: 243 NNIV 246
           N ++
Sbjct: 215 NQLL 218


>gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 209

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L  R+D    ++           +    +             
Sbjct: 1   MKILIVDDHPVLRDGVEALLRRNDAALAVVQAASADDAMQMLDQHAD------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +A +              +         +     A   
Sbjct: 48  -IDAIVLDLKMRGTSGVDAIAALARARPALQ--------IIVLSSSEDPRDVRAAFAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   ++++    R +    L +                        LT
Sbjct: 99  LGYVPKSASPHTLLSAIVMVLNGERYVPPLLLDDGAPYTIEPPRHAAGAP--------LT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R++E L +++EG  +  IA  LG+S  TV  +I +I R      R+ A A   +  ++
Sbjct: 151 PRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209


>gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 206

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 12/177 (6%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL----------PENITPPAGMDNRYC 131
           +P + V+     +      V +       P                 +    AG+     
Sbjct: 28  YPREWVQYYEGRDYAATDPVHRAAFIQSTPYRWHDIAGLSKAERRLLDEAKEAGLPGGLS 87

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGR 189
                     +   L  P   +    +     L++                     LT  
Sbjct: 88  IPVHQADGSVVLFNLSGPLHSVNDAIKSRIACLISTQFHCELHRLSPISRCRASRLLTPC 147

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ CLTW++ GKTS EIA ILG S  TV+ +I   M+     +R+ A  YA    I+
Sbjct: 148 QIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQALNMCSRTAAAVYASVQGII 204


>gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 210

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 26/222 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSSDWPF 84
           R+   D  +     + AL +  G                +          D  +      
Sbjct: 5   RIALADDQILVRAGLRALLQQQGVEVVCEADDGQGLLDALAIHTVDVVLSDIRMPGLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +             R   L    F      +         +         +R  +
Sbjct: 65  QALEHLRARG--------DRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++          ++         +          + REV  L  ++ G ++ 
Sbjct: 117 ERVAAGDTLLQP--------VSTDPVRARYQFRDQQAPRETFSEREVAILRLLAGGYSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++  TV NY+++I+ K   + R+ A+  A+   ++
Sbjct: 169 EIARTLFLAEGTVKNYVSTILEKLGIRDRTRAVLKAITLRVI 210


>gi|89893631|ref|YP_517118.1| hypothetical protein DSY0885 [Desulfitobacterium hafniense Y51]
 gi|89333079|dbj|BAE82674.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 12/232 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +    +     +  +    D       L   +     +  + +   A   +     L   
Sbjct: 1   MMEPQKIEQQKIITVFLADDHHILRQSLGVFLDQQRDLGVVGQAGTAEQAVREALHL--- 57

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            + D I+      D     A  +  K +   +        +       +         Y 
Sbjct: 58  -RPDVILMDIDFLDFSGIEATIQIRKEWPEARIL---ALTMHSEENYLLPFLDAGGCGYL 113

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   + +       +  + L  +                H G +  LT RE 
Sbjct: 114 HKSAADTDLIRAIRMAAQGQVFLRPEGLAVLT-----VQQKLNKKQKHCGGEPVLTERET 168

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L  ++ G TS EI   L I+ +TV+ Y   +++K    TR+  + YA+ +
Sbjct: 169 QVLGMVARGYTSKEIGEKLYIAPSTVDTYRERLIKKLEFTTRAQLVDYAILH 220


>gi|167463449|ref|ZP_02328538.1| Response regulator (CheY-like recever domain and HTH DNA-binding
           domain) [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 19/227 (8%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            + +E+R   +S      + L  ++ +   ++         E +      L+  +     
Sbjct: 6   AQAEERRR--ISRALHDRESLRMLLGMQEELNVMGTCENGAEALKW----LMEGNEADVI 59

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D+ +      +  + +           ++         F      I         Y  
Sbjct: 60  LMDNRMPECDGVEGTKRIHEQF-----PSIKIL---VLATFDDDEFIIEALRNGACGYLL 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 +I  G+  ++    +I  D   ++           ++ D      + LT  E  
Sbjct: 112 KNVPPEQIVHGIKTVYQGNWLIHPDISKKLTGYIQAPTPFLQTLDQ-----YGLTKAEQA 166

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  ISEG ++ EIA  L +S  TV NYI+ I+ K + + R+    +
Sbjct: 167 IVEKISEGLSNKEIAGTLFLSEETVKNYISGILDKFSLRDRTQIALF 213


>gi|330830262|ref|YP_004393214.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Aeromonas veronii B565]
 gi|328805398|gb|AEB50597.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Aeromonas veronii B565]
          Length = 196

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 54/212 (25%), Gaps = 30/212 (14%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--DSIVSSDWPFDLV 87
            D           ++    +  + E  G++   L        +    D  +      DL+
Sbjct: 8   DDHQIVRSGFAQLLNLEPDLQVVAE-FGSASDALAGLPGSGARVCVCDISMPDQSGLDLL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +                 +   V  +              + S       +   +   
Sbjct: 67  KQLPS-----------GLAVVMLSVHDSPALIEQALQTGAKGFLSKRCSPDELIAAVRTA 115

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +  D   ++                       LT RE E    +++G     IA
Sbjct: 116 AQGGCYLTPDIAQKLA----------------SSSRDPLTNREREIAQLLAQGLEVKAIA 159

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LG+S  TV+ + A++M K            
Sbjct: 160 EQLGLSPKTVHVHRANLMDKLKVSNNVELAHR 191


>gi|258592283|emb|CBE68592.1| Two component transcriptional regulator, LuxR family [NC10
           bacterium 'Dutch sediment']
          Length = 222

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 60/230 (26%), Gaps = 21/230 (9%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
                 R   +       + L+R++  +             E        ++        
Sbjct: 5   ADMKRIRVLLLDDHILFREGLSRLLQSEPDFEIVGVCGTSAEA-----IEILSRGPVDVV 59

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +  D    L+             ++                         +    
Sbjct: 60  LLDFDLGEDHGSQLISAARGGGYSGKILMVTAGMSAAESSI--------ALKLGASGIFL 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   + L+      +       I L+A                   LT RE +
Sbjct: 112 KHSPPDALVNAIRLVVSGVVWVDE---RVIQLIADAVNQPEDQEGHKR-----LTEREEQ 163

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L  + EG T+ E A  LG++   V   +  + +KT  +TRS  +  A+ 
Sbjct: 164 VLQAVFEGLTNKETAARLGVTEGAVKATLQHLFQKTGVRTRSQLVRVAIE 213


>gi|120612503|ref|YP_972181.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590967|gb|ABM34407.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 210

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +S  + +  + E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLRQFLSEHVDLRVVGEAANGREAIDLVRNHEIDVLLMDLSMPGQSGLDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        I       + Y +   D   I   +  +
Sbjct: 67  AMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECDPKEIVEAIRTI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +       +                      +L+ RE +    +++G+T+ +IA
Sbjct: 119 SLGRRYLTPAVADLLAQQLNR--------KDDAPPHEQLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K A  + S    YA++N ++
Sbjct: 171 KSLSLSVKTVSTYRTRLMEKMALSSNSDLTYYALKNKLI 209


>gi|163849813|ref|YP_001637856.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661418|gb|ABY28785.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 278

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 71/233 (30%), Gaps = 12/233 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    L     LLAR+         T    A T   G     +V     +   
Sbjct: 48  RQSEERFATAFRLTPVPTLLARLDGFT----VTSINDAFTRVFGYGEDSVVGRSPSETGL 103

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
             +  + +   + V          +    +               +       +  +  L
Sbjct: 104 WVADAARERFEEAVGR------TGFVPGQEVCLRHQDGSELDCLASAERVEIGEETFALL 157

Query: 134 TFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  R R    L      ++     +  GL+               G    LT RE 
Sbjct: 158 VLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQPGGHDGDGASPILTVRER 217

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 218 QILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 270


>gi|120436972|ref|YP_862658.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117579122|emb|CAL67591.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 205

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 59/222 (26%), Gaps = 22/222 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D  A +  +     +   +  +     G     L R         D  +     
Sbjct: 3   RLVIAEDHTALIDGIKVFFEYEEDIEFVGFANNGQELIELTRRKKPNLIITDIRMPVMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               + +           ++         F              + Y      +  +   
Sbjct: 63  IQATKEILEEF-----PNIKIIAFSM---FDQDKAVQQMLEAGASGYILKNSSLKELLYA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +         +                K   V       LTGR+ E L  I +G+T+
Sbjct: 115 IRKVHEGEHYYDPNIT-------------VKQKSVSPKSKAVLTGRQREILKLIGQGRTN 161

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L I + TV  +  +++RK   +     + YA+    
Sbjct: 162 QEIADQLFIGKTTVETHRKNMIRKLGLQGAGELLRYALEKKY 203


>gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
 gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL
           S4-120]
          Length = 69

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  +++GK++  I   L IS  TV N+++SI++K     R+ A+  A+++  
Sbjct: 6   LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 65

Query: 246 V 246
           V
Sbjct: 66  V 66


>gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 199

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++     V   ++        GA    ++  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLSFQPDVETVLQAKN-----GAEAIEVLGKEAVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  +           +     +    F              + Y      +
Sbjct: 56  MPVKTGLEALEWIKQE--------VPEIKVVIVTTFKRPGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V       LT +EV  L  +
Sbjct: 108 AELMQTLHTVLEGRKEYSPELM-----------------EVMMTHPNPLTEQEVAVLHGV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A     +
Sbjct: 151 AQGLSNQEIADKLYLSNGTVRNYMTNILSKLNASNRTEAAKTAEEEGWL 199


>gi|168487139|ref|ZP_02711647.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|194398168|ref|YP_002038583.1| response regulator [Streptococcus pneumoniae G54]
 gi|225861819|ref|YP_002743328.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230314|ref|ZP_06963995.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255058|ref|ZP_06978644.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503771|ref|YP_003725711.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|183569979|gb|EDT90507.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|194357835|gb|ACF56283.1| response regulator TCS11 [Streptococcus pneumoniae G54]
 gi|225728123|gb|ACO23974.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239366|gb|ADI70497.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|327389165|gb|EGE87511.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 199

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +     +    V+          F              + Y      V
Sbjct: 56  MPVKTGLEVLEWIRSERLETKVVVV--------TTFKRAGYFERAVKAGVDAYVLKERSV 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|206970619|ref|ZP_03231571.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
 gi|206734255|gb|EDZ51425.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           AH1134]
          Length = 212

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVILDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
 gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN
           42]
          Length = 261

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
              +    +    +     +               +      V + +P   V    L++ 
Sbjct: 29  FSAMKNAATVAAALDEFQSHYPIDFVTFHLARTIVDNVDAPFVRTTYPDSWVSRYLLNDY 88

Query: 96  DKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFD-VARIRIGL 144
                +++       P      +          +        N       D   R  + +
Sbjct: 89  INVDPIIREGFSRQLPFDWREIDITETAQEFMVDAELHGIGTNGVSVPIVDKSRRSLLSI 148

Query: 145 MLLFPKGRIILRDRLWEIGLL-AAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGK 201
                     L +R +    L   +  +                L  RE+ECL W S GK
Sbjct: 149 NSQKSDEEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHWASRGK 208

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S +I  ILG+S +T   Y+ S   K    T S AIA+AV  N++
Sbjct: 209 DSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNLI 253


>gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae
           SmR1]
 gi|300074066|gb|ADJ63465.1| LuxR family response regulator protein [Herbaspirillum seropedicae
           SmR1]
          Length = 217

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 54/215 (25%), Gaps = 23/215 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       L   +     +  + E                    +D  +      +L  
Sbjct: 18  DDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGIELTA 77

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                  +           L   +       +         Y         I   +  + 
Sbjct: 78  LFHARHPEI--------AVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVR 129

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G         ++                       LT RE E L  I+ G+++ +IA 
Sbjct: 130 SGGIYYSAALARQL--------------TQPLPPRELLTQREREVLMHIANGESNKQIAR 175

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L +S  TV  +  +I RK     ++  I +AV +
Sbjct: 176 ELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVES 210


>gi|311111869|ref|YP_003983091.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943363|gb|ADP39657.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 210

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 61/227 (26%), Gaps = 22/227 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
                     + LA ++ L+  +    ++       G      +         LD  +  
Sbjct: 5   MLADDQQLVREALAALLGLENDIEVVAQVGG-----GDEVIPAINRYHPDVVLLDIEMPG 59

Query: 81  DWPFDLVRCMAL-SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +   A   +             L    F          A   + +       ++
Sbjct: 60  SELSSGIDVAAAIRDAKLVTLTGDPVRSLIVTTFGRPGYLRRALAAGASGFMVKDTSASQ 119

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  G+  +     ++      E                     +  LT RE E L     
Sbjct: 120 LAEGIRRVHAGMHVVDPALAAE----------------SLAYGESPLTERETEILRVAGH 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+  I   L +S  TV N+++S M K     R  AI  A  N  +
Sbjct: 164 GATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210


>gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 220

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 21/219 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQE-----QKLDSIVSSDWPFDL 86
             R++  D        +    E  G      +  +   +      +  D ++  D+    
Sbjct: 16  ALRVLIADDHDLLRDTLKLFLEGEGEFETVTVASYSEAEALVQGGEVFDLVLL-DYSMPG 74

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +    +    N  +R   +      +        A     +   T     +   +  
Sbjct: 75  MNELEGFARMSRLNGARRVAVISGT--ASPEVAEKVLAAGAAGFVPKTLSAKSLVNAVRF 132

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    +    + L              K  +    +   L+ RE+E L  +++GK++ EI
Sbjct: 133 MSMGEQYAPLEFLRTA---------EEKEGNPLADR---LSRREMEVLERLTQGKSNKEI 180

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L I   TV  ++ ++ RK     R+ A  +A    +
Sbjct: 181 ARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFAKEAGL 219


>gi|256379380|ref|YP_003103040.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923683|gb|ACU39194.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 218

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 60/219 (27%), Gaps = 19/219 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++     R   V   P     L+    L  +   T+   A    +G     L        
Sbjct: 1   MSAVRPLRVLVVDDHPMFRFGLS--AVLASSPEITVVGEASGGGMG---VELAAALRPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      +  R +                 L   +F                Y 
Sbjct: 56  VVMDLNMPDLGGVEATRRVVAEH--------PGARVLVLTMFDDDDSVFAAMRAGALGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  +I   +  +     I        +       A              ELT RE 
Sbjct: 108 LKASQPQQIVRAVRAVSEGEAIFSPAIAGRL------LAYFGAPAQPRPETFPELTSRER 161

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           E L  ++ G+ +  IA  L +S  TV N++++I+RK   
Sbjct: 162 EVLRLMAGGEGNGAIARGLVLSPKTVRNHVSNILRKLHV 200


>gi|297193217|ref|ZP_06910615.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720487|gb|EDY64395.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 221

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 32/241 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  L      +  +          +R+ A            
Sbjct: 3   EKGKITVFLLDDHEVVRRGVHELLAAESDIEVVGEAGTAEDALVRIPAAA---------- 52

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +    ++           L    F          
Sbjct: 53  -----PDVAILDVRLPDGSGVEVCREVRSRNENINC--------LMLTSFADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-- 181
                 Y       + +   +  +     ++                   +  +   G  
Sbjct: 100 MAGAAGYALKAIRGSELLAAVRDVAAGRSLLDPAATAR-------VLERLREGNRPAGDE 152

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + R+ A AY  
Sbjct: 153 RLANLTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRAQAAAYVA 212

Query: 242 R 242
           R
Sbjct: 213 R 213


>gi|167574161|ref|ZP_02367035.1| probable two-component response regulator, LuxR family protein
           [Burkholderia oklahomensis C6786]
          Length = 192

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 55/189 (29%), Gaps = 19/189 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +   +        LD  +      D++      +  + +  L           H  
Sbjct: 22  GLEVYAACQRLDPDIVLLDLGLPGMNGLDVI-----HQLRRRWPDLGILVVTAETTEHRA 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +       N Y         +   +  ++    +I      +             + 
Sbjct: 77  SAALAAG---ANGYLLKNSSKQTLLDAIWKVWRGHTVIDPALNVDQV-----------TT 122

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + L  ISEG  + +IA  L I+  TV  +  ++MRK      +  
Sbjct: 123 KAVPDGAVALTPRERQVLKLISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAEL 182

Query: 237 IAYAVRNNI 245
             +A R  +
Sbjct: 183 ANWAHRLGL 191


>gi|119963006|ref|YP_946274.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119949865|gb|ABM08776.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
          Length = 208

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 63/227 (27%), Gaps = 37/227 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  ++++L  +     S +  L      +A +                            
Sbjct: 1   MNSISVLLVDDHTVVRSGLKALLGTQADIAVVGEAASGEEALEAAQE------------- 47

Query: 65  RWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +     +D  + +     + ++ +      +          +    + +  + +   
Sbjct: 48  --HMPAVVLMDLAMGAGMDGIEAIKQLRQRNPKQ--------AVIVFTTYDSDADIVRAV 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   +        ++          +A+      +        D
Sbjct: 98  DAGAMGYLLKDAAPEEIFAAVRGAVQGKSVMS-------APVASRLFQQLR------NPD 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             LT RE E L+ ++EG ++ ++   L IS  TV  ++A I  K   
Sbjct: 145 EILTPREAELLSLLTEGLSNRDLGKRLFISEATVKTHLAHIYAKLGV 191


>gi|319764502|ref|YP_004128439.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317119063|gb|ADV01552.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 209

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +    T S  +               +                  
Sbjct: 2   IQVVLCDDHAVLRRGIRDTLTESPDICVTGEAGSYPELREVLRTAA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  S        ++       P        +       
Sbjct: 48  -CDVLLLDLNLPGRNGLEVLASLKESH-----PAIKVLIVSMYP---EDQYALRCLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D  ++   +  +    + +  +    +            +          L+
Sbjct: 99  HGYANKAGDPVQLIAAVHTVMQGRKYLTPEVAQLLA--------DSLAQPTPELPHESLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +V
Sbjct: 151 ERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLRLANNAELTVYAIRNRLV 209


>gi|293418602|ref|ZP_06661037.1| hypothetical protein ECCG_03486 [Escherichia coli B088]
 gi|291325130|gb|EFE64545.1| hypothetical protein ECCG_03486 [Escherichia coli B088]
 gi|323184837|gb|EFZ70207.1| response regulator [Escherichia coli 1357]
          Length = 210

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPITRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|323356659|ref|YP_004223055.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273030|dbj|BAJ73175.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 218

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 13/219 (5%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E   R           + LA ++ L   V         T   G     L        
Sbjct: 1   MREEPPIRVLVADDQAIVREGLATVLALLPDVEVVG-----TAADGEEAVALAVQRHPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +           + +         +     L    F      +         Y 
Sbjct: 56  VLMDLRMPRLDGVAATARLVVD--------VPSAAVLVLTTFADDESIVAALTAGAKGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +     A +   +  +     I   +    I              +    +   LT RE+
Sbjct: 108 TKDAGRAELAAAVRSVARGQAIFSAEVGATIVDSLTRPRPTTSPGEGLAARFPRLTRREI 167

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           + L  + EG T+ EIA  L +  +TV  ++ ++  K   
Sbjct: 168 DVLALLVEGCTNAEIAERLFVEVSTVKTHVIALFAKLGV 206


>gi|295700048|ref|YP_003607941.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439261|gb|ADG18430.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 217

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 63/225 (28%), Gaps = 17/225 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            +  ++ L    D       L   +        + E   A   L +     + Q     +
Sbjct: 5   TSPSIARLLLVDDHPLVRDGLRARLEAVRHFEVVGEAGDAQQALAL----AERQAPHLAL 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +  +AL+              L   +   L           + Y        
Sbjct: 61  MDVGMKSGMNGIALAGLFHE--RFPAIRVLMLSMHDNLEYVTQAVRAGASGYVLKDSPAL 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +         +            +               LT RE + L  ++
Sbjct: 119 EIIQAIGAVLDGKTFFSAE-----------ISARLIQASATQSPVERLTPRERDILDALA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EG +S +IA+   +S  TV  +  ++ RK   + ++  I +AV N
Sbjct: 168 EGLSSKQIALRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 212


>gi|291302292|ref|YP_003513570.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571512|gb|ADD44477.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 210

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 14/221 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D  A    L         +  + E        +   D   + + D +V      
Sbjct: 3   RVLIADDHAAVRAGLTLICDTAEDLTVVGEA----ADGVEAVDKAIQLRPDVVVMDIRMP 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L    A ++     +VL          +          A     +     D   +   +
Sbjct: 59  RLDGIAATAKLTGVADVL------VLTTYGDDSHVFDALAAGAAGFLLKDTDAEALVAAV 112

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +I       +  +A +     +           LT RE+E L+ I  G ++ 
Sbjct: 113 REVAAGNGLISPAVTRRL--IAEFGRRRPRPGSQADLSS--LTQREIEVLSHIGRGLSNA 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +I   LG++  TV  +++ I+ K   ++R  A   A  N I
Sbjct: 169 DIGKDLGMAEATVKTHVSRILSKLELQSRVQAAILAQENGI 209


>gi|298345176|ref|YP_003717863.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063]
 gi|315655623|ref|ZP_07908521.1| transcriptional regulatory protein DegU [Mobiluncus curtisii ATCC
           51333]
 gi|298235237|gb|ADI66369.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063]
 gi|315489687|gb|EFU79314.1| transcriptional regulatory protein DegU [Mobiluncus curtisii ATCC
           51333]
          Length = 224

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 11/215 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +I +D        +  + E        G         DL Q    D ++       +   
Sbjct: 11  VILIDDDHEILEDLRLVIEADPEISVAGIGFDGSYVLDLVQTHHPDVVLMDVEMPKVDGI 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A  +    Y        +    F              + + +     A +   +  +  
Sbjct: 71  AATRQLKSRYP---NLGVIMLTNFRHDTWLKEALDAGADGFLTKDTPRADLSAAIKRVAH 127

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            GR +    L  +  +A Y+   F         +  LT  E +       GK++ +IA +
Sbjct: 128 GGRFMSTKPLNML--IANYEDPNFTPDPRFRAGEKALTATERQVWQEALRGKSNAQIAKV 185

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +    +T+  ++++IM+K + ++R+  + ++ +N 
Sbjct: 186 MQSKESTIKTHMSAIMQKFSVRSRAELLVFSAKNG 220


>gi|21224575|ref|NP_630354.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|6273659|emb|CAB60173.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 229

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 25/244 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + +S +   ++ +  +                    G     LV
Sbjct: 1   MTAIRLLLVDDDPLVRAGLSLMLGGAEDVEIVGEAAD---------------GDEVVALV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +           +          FH   + +    
Sbjct: 46  DRTRPDVVLMDIRMPGTDGLTATERLRSR---PDAPQVV-----VLTTFHADEQVLRALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGK 182
                +       A I   +  +     ++       +                     +
Sbjct: 98  AGAAGFVLKDTPPAEILHAVRRVAAGDPVLSPAVTRRLMEQAAGTAPDARHARRTRARAR 157

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L  RE E    +  G  + +IA  L +S  TV  +++ I+       R      A  
Sbjct: 158 VDTLNDREREVAVAVGRGMANADIASHLFMSVATVKAHVSRILAGLDLDNRVQIALLAYD 217

Query: 243 NNIV 246
             ++
Sbjct: 218 AGLL 221


>gi|56963890|ref|YP_175621.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56910133|dbj|BAD64660.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 204

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 36/236 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +D      +  L    D    +   +                G    + +   
Sbjct: 1   MNILIVDDDALVCQSLELLLGNEDDFTVVGTANN---------------GREALVQIEKK 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +     +           +    F              
Sbjct: 46  APDLVLMDIRMPEMDGIESTKEIKSRWPEM--------LIMMLTTFQDEQNIRLALQAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +  VA +   +  L     ++  D L ++                H      LT
Sbjct: 98  EGYLLKSTAVANMAKQIRALSAGSSVLDADVLKQL-------------VKPHADALAGLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E    I++G ++ EIA  L +S  TV N ++ I+ K   + R+    Y  ++
Sbjct: 145 KRESEIAECIAQGLSNKEIAAHLFLSVGTVRNTLSVILDKLELRDRTQLAIYYWKH 200


>gi|27380799|ref|NP_772328.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27353964|dbj|BAC50953.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 217

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  +          +      L  +   D          A                
Sbjct: 9   ISVLLVDDHPIVRQGYRRVLESQGDLHVVAEADNAADAYGAFKA---------------H 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +R +             R   L   + +         +   
Sbjct: 54  DPDVVVLDISMPGASGLEAIRNIRARS--------PRARILVFTMHNEAVLVKAAFSAGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + + + + + +   +  +    R +  D    +        +             +L 
Sbjct: 106 SGFVTKSSEPSAVVNAIRSVARGERAMSDDIAHILA------DDSLSPTGSVLD---QLG 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L   + G T+++IA  L +S  TV NY   I  KT  +T +  +  A    +
Sbjct: 157 EREIEILRQFAGGATTEQIATHLNLSVKTVQNYHYLIKTKTGARTDAQLVRLAASCGL 214


>gi|116626924|ref|YP_829080.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230086|gb|ABJ88795.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 230

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 21/224 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    + +A +   +        +  +++  G +   ++         LD  +   
Sbjct: 15  LADDHAIVREGIAALCAANGM----RILGQVSD--GMAAVQMIEELRPDFAILDLHMPQI 68

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +R + L+          +   +   +       +       + Y         + 
Sbjct: 69  TGVEAIRRLRLNHC--------QAKLMILSISREEGTVMEALRAGADAYLLKDGPSRHLL 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G  +         +L                    L+ RE+E  +++  G 
Sbjct: 121 DAISFVRDGGVYVSP-------MLRGAGLFTKSEKTRAEDPLAALSPREMEVFSYLVNGL 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +IA +L IS  TV+ Y AS+MRK       G + +A+  N+
Sbjct: 174 RAKDIADLLEISPKTVDTYRASLMRKLNVHDLVGLVKFAIERNL 217


>gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 199

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++     V   ++        GA    ++  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLSFQPDVETVLQAKN-----GAVAIEVLEKEAVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  +           +     +    F              + Y      +
Sbjct: 56  MPVKTGLEALEWIKEE--------VPETKVVIVTTFKRPGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V       LT +EV  L  +
Sbjct: 108 AELMQTLHTVLEGRKEYSPELM-----------------EVMMTHPNPLTEQEVAVLHGV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A     +
Sbjct: 151 AQGLSNQEIADKLYLSNGTVRNYMTNILSKLGASNRTEAAKTAEEEGWL 199


>gi|313835533|gb|EFS73247.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928592|gb|EFS92423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970359|gb|EFT14457.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|314982460|gb|EFT26553.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315090549|gb|EFT62525.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094064|gb|EFT66040.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|328908207|gb|EGG27966.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 206

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 57/226 (25%), Gaps = 29/226 (12%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
                       LA ++ ++  +             G   F LV+        LD  +  
Sbjct: 10  VLADDQTLVRGALAALLSMENDLEIVGTCGR-----GDEVFALVQATHADVCLLDIEMPG 64

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                +   +                 L    F                +         +
Sbjct: 65  IDGITVAAELRDQASW--------CRVLIVTTFGRPGYLRRAMDAGVAGFLVKDTPAEDL 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +   GR+I      E                        L+ RE E L     G
Sbjct: 117 ARVVREVHAGGRVIDPALAAE----------------SLIEGHNPLSEREREILRLAESG 160

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   IA  L +S  TV N+++S + KT    R+ A   A +   +
Sbjct: 161 ASISLIASQLYLSVGTVRNHVSSAIGKTGAANRTEAAVTARQRGWL 206


>gi|299821741|ref|ZP_07053629.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817406|gb|EFI84642.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 213

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 16/215 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L+  +     +  A T   G +              LD  +      
Sbjct: 4   LLLADDNAFITGGLEIILDMEADIEVAATVANGQAAVDYCLEYDIDVALLDVRMPVMNGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 +    F      I         Y     D   I   +
Sbjct: 64  EAAKRITAET---------ETKVIILTTFDDDAYIIDAIRNGAEGYLLKNNDPKIIIAAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     I+  +   ++ +  +       +          LT RE + +  ++ G ++ 
Sbjct: 115 RGVVQNQNIMQAEIWEKVKVALS------GNQTKAHMAKLPLTSREQDVIQAVASGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L IS  TV N I++++ K   + R+    +
Sbjct: 169 EIAKKLFISEGTVANNISALLNKLGLEHRTQLAIF 203


>gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 214

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 12/187 (6%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
               L     F+   +D  +      D+V  +   + D    V+         +      
Sbjct: 38  DAISLAAAVKFELALIDLGLPDGSGVDVVTKLRDVQPDAQSVVV--------TIHDDDEH 89

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                      Y         I   L  +      +       +                
Sbjct: 90  LFPALQAGAFGYILKEQPRELIVEQLQRISQGEPPLSPSIARRM----MAHFTQKAKPQT 145

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE E L  +++G T  EI V LG+SR+T+ +Y+  I RK    +R+ A  
Sbjct: 146 SLLPHVQLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAAL 205

Query: 239 YAVRNNI 245
            A R  +
Sbjct: 206 EAQRLGL 212


>gi|319953755|ref|YP_004165022.1| two component transcriptional regulator, luxr family [Cellulophaga
           algicola DSM 14237]
 gi|319422415|gb|ADV49524.1| two component transcriptional regulator, LuxR family [Cellulophaga
           algicola DSM 14237]
          Length = 214

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 29/238 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+++  + +     +  +   +   + ++           +             +   D 
Sbjct: 4   NLIIADDHKMFIDGLISILNEAPEFSVILTAKNGAQVEKYL------------SINSADN 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      +L + +        Y  L+                        +
Sbjct: 52  IHLLITDLTMPEMGGIELNKIVKSK-----YPSLKTLVVSMHI---DGMMIDKLIKNNVD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +  +    +    + + +    A ++    +           LT 
Sbjct: 104 GYVPKNAEKEELLTAIRSIIKGEKYFSPE-IKKAYTDAMFENKKMEEIS--------LTD 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I+E  T+ EIA  L +S++T+ +Y  +++ K   K  +G   +A++  ++
Sbjct: 155 REKEVLKLIAEENTTQEIADKLFLSKHTIESYRKNLISKLNVKNLAGLTKHALKMGLL 212


>gi|323160954|gb|EFZ46875.1| transcriptional regulatory protein uhpA domain protein [Escherichia
           coli E128010]
          Length = 145

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 16/149 (10%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            +S  +    + +    +   V  +              + S       +   +  +   
Sbjct: 8   DISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 67

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G  +  D   ++                  G+   LT RE +    +++G    EIA  L
Sbjct: 68  GCYLTPDIAIKLA----------------SGRQDPLTKRERQVAEKLAQGMAVKEIAAEL 111

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+S  TV+ + A++M K            
Sbjct: 112 GLSPKTVHVHRANLMEKLGVSNDVELARR 140


>gi|291301186|ref|YP_003512464.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570406|gb|ADD43371.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 56/224 (25%), Gaps = 10/224 (4%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +  L    D L R+   D                G S              +D  +   
Sbjct: 1   MIRTLIVDDDALVRLGLCDLLDDEPDITVVAQAADGKSAVAQAERHRVDVALMDVRMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +            +    +    F          A     +     D   I 
Sbjct: 61  DGIAATARLRALP--------EPAQVIALTTFDLDEYVYDMIAAGAAGFLLKDTDPGEII 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + ++     ++       +  +  Y             +   LT RE + L  ++ G 
Sbjct: 113 RAIRVVAAGDAMLHPAAARRL--IERYHRAARPRATAVRHRVDRLTPRETDVLRHLALGA 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA  L +  +TV  ++  I+       R  A   A    +
Sbjct: 171 TNAEIAASLSMRESTVKAHVTRILATLDVTNRVQAALCARDAEL 214


>gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli
           IE4771]
          Length = 246

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 65/225 (28%), Gaps = 14/225 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
              +    +    +     +               +      V + +P   V    L++ 
Sbjct: 14  FSAMKNAATVASALDEFQSHYPIDFVTFHLARTIVDSVDAPFVRTTYPDSWVSRYLLNDY 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDNRYCSLTFDVARIRIGLM 145
                +++       P      +          +        N       D +R  +  +
Sbjct: 74  INVDPIIREGFSRQLPFDWREIDITETAQEFMVDAELHGIGSNGVSVPIVDKSRRSLLSI 133

Query: 146 LLFPKGRIILRDRLWEIG--LLAAYQANMFK--SYDVHWGKDFELTGREVECLTWISEGK 201
                           +   L   +  +                L  RE+ECL W S GK
Sbjct: 134 NSQKSDDEWTLIERQFLPEWLELGFLLHRKAVFELHGENDPVPALGSREIECLHWASRGK 193

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S +I  ILG+S +T   Y+ +   K    T S AIA+AV  N++
Sbjct: 194 DSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSAAIAHAVHLNLI 238


>gi|229590397|ref|YP_002872516.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229362263|emb|CAY49165.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 217

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 56/239 (23%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   +    L         +               L               
Sbjct: 5   LRLVLADDHEVTRTGFVALLAGHPQFEVVGQARDGQQAVELCEQL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++       L    A     +    ++           +            
Sbjct: 50  -----LPDIVILDIRMPVLNGLGAARLLQQRLPAIKVVIFTMD---DSPDHLEAAMNAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRNEVIEALQRVAAGEEALNTAVSARL------LRRMTERNAAGSLPTEHLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ +I   LGI+  T   ++  ++ K     R+ A    +   +V
Sbjct: 156 PRERQVLGLVANGMSNRQIGEHLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLV 214


>gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        +      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLI 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|327309817|ref|YP_004336715.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
 gi|326955152|gb|AEA28848.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +     + ++ +   A     LVR   F    LD  +      
Sbjct: 4   LLIVDDHTIFRAGLVRLLEEGCSVDSVAQATDAQGALELVREQPFDAVLLDINLPVKSGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L+  +          V  R   +   ++      +       + Y S   D   +   +
Sbjct: 64  ELLPALRA--------VAPRLPVIMLSMYSAEQYALRAYEAGASAYVSKDMDADVLMAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   GR I  D   ++                      +L+ RE   +  I+ G +  
Sbjct: 116 RKVVSGGRYITPDVADQML--------RKIDAVPGNSPHLQLSEREYNVMIRIATGTSLT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  + +S  TV+ Y   ++ K         + YA+++ ++
Sbjct: 168 SIAQEMHLSVKTVSTYRTRLLTKLGLDGNVELVRYALQHRLI 209


>gi|196230501|ref|ZP_03129363.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225431|gb|EDY19939.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 232

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 64/240 (26%), Gaps = 29/240 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
           F   QV +VL  +      +++ +  R          D        ++            
Sbjct: 15  FGASQVKVVLVEDHRMFREWLTQMLGRDSGCEVCGETDNIHDAQRIIHET---------- 64

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      +L++ M     +           L   +          
Sbjct: 65  -----KPDIVIVDITLKGSSGLELIKDMRAQGLE--------TPVLVLSMHDEALYAERV 111

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y S     + +   +  +      +        G+ A+    +          
Sbjct: 112 LRAGARGYISKHEASSTLSKAIRHVLSGQVYLSE------GMTASLLEKVSGRKPSTSSG 165

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L  RE+E    I +G    EIA +L +   TV+ Y A I  K   +  +   + A +
Sbjct: 166 LELLADRELEVFQLIGKGHNGREIAQLLHLGETTVDTYRARIKEKLRLRNAAELYSRAAQ 225


>gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 240

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 23/239 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S       +++ +  LD   +    +  L     +   +  ++           ++ + 
Sbjct: 9   ASRDLLIQQMVSTISELDGQTAIENALEWLRRECNSERAMFYQFKGPVLLTF---ITCNV 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127
                +     E      V++                        +  + +       + 
Sbjct: 66  DDAWGKAYRQREFITQDPVIR-CYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAIS 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A     +  L   GR I  ++ + +  L     ++ +           LT
Sbjct: 125 YGYMN-HCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFC---SRGLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 181 HRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|254446726|ref|ZP_05060201.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198256151|gb|EDY80460.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 222

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 15/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L   +       +  +      +++R                   +      T 
Sbjct: 33  GREALKLCEEEKPDIVMFEMYLPGLNGIEILRQY--------SPKNPGTRFIAISANFTP 84

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      +   S +   A+++ GL  +      +         + A+         
Sbjct: 85  DSIRELLELGCHGIVSKSSSAAKLKEGLREVKSGSGYLCP-------ICASLLRESHLVG 137

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K   L+ RE E L  ++EG ++ +IA +L +S  T+  + A++M+K   ++    
Sbjct: 138 SAVAKKKNRLSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAHRANLMKKLDARSAVEL 197

Query: 237 IAYAVRNNIV 246
              A    I+
Sbjct: 198 TRCAFELGII 207


>gi|167585162|ref|ZP_02377550.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 218

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       + HL     +   +   +                G      V   
Sbjct: 3   LNILLVDDHAIVRQGIRHLLIDRGVAREVTEAET---------------GGEAMAAVDKR 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  ++     ++++ +           L R   L   ++      +       
Sbjct: 48  EFDVILLDISLTDMNGIEVLKRLKRK--------LPRTPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMISAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y   ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIAHTLSLSVKTVSVYRTRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|68299597|dbj|BAE02742.1| Two-component regulatory system global activator GacA [Pseudomonas
           fluorescens]
          Length = 213

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    +  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLIKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +  S  D    V+              P          
Sbjct: 47  KPDVVLMDVKMPGIGGLEATPKLLRSHPDIKVVVVTVC--------EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++ + +                   L+
Sbjct: 99  AGYLTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLAIKSFQ--------TTSDSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K +  +        VR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDVELTLLPVRHGMV 209


>gi|256784226|ref|ZP_05522657.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289768110|ref|ZP_06527488.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289698309|gb|EFD65738.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 25/244 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + +S +   ++ +  +                    G     LV
Sbjct: 1   MTAIRLLLVDDDPLVRAGLSLMLGGAEDVEIVGEAAD---------------GDEVVALV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +           +          FH   + +    
Sbjct: 46  DRTRPDVVLMDIRMPGTDGLTATERLRSR---PDAPQVV-----VLTTFHADEQVLRALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGK 182
                +       A I   +  +     ++       +                     +
Sbjct: 98  AGAAGFVLKDTPPAEILRAVRRVAAGDPVLSPAVTRRLMEQAAGTAPDARHVRRTRARAR 157

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L  RE E    +  G  + +IA  L +S  TV  +++ I+       R      A  
Sbjct: 158 VDTLNDREREVAVAVGRGMANADIASHLFMSVATVKAHVSRILAGLDLDNRVQIALLAYD 217

Query: 243 NNIV 246
             ++
Sbjct: 218 AGLL 221


>gi|229096320|ref|ZP_04227293.1| Response regulator [Bacillus cereus Rock3-29]
 gi|228687280|gb|EEL41185.1| Response regulator [Bacillus cereus Rock3-29]
          Length = 212

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVLDTVNDGKEAVAYCKKHEVDIVLLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|218663384|ref|ZP_03519314.1| probable two-component response regulator protein [Rhizobium etli
           IE4771]
          Length = 178

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 53/185 (28%), Gaps = 18/185 (9%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              ++   +      LD  +       +   +A           +        V   +  
Sbjct: 11  DAAMIASNNRPDVMLLDVSMPGGGLAAIGDVLA------RSPTTKVLM---LTVSEEVDT 61

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +         Y         +   +  +    R I      ++   + +        D 
Sbjct: 62  LLGALQQGAMGYVLKGVGSRGLAEAIQTVLSGSRYISPTMSTKVMENSLH--------DS 113

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K+  LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A  
Sbjct: 114 ASDKNS-LTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAAL 172

Query: 239 YAVRN 243
                
Sbjct: 173 QWRER 177


>gi|241258818|ref|YP_002978702.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863288|gb|ACS60951.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 275

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 76/262 (29%), Gaps = 32/262 (12%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D  R   +        +  +    +       + +   + +G    +     +  +   
Sbjct: 3   DDPIRDDPILDDI--GTIRRQFTAHETLDGRIDQAFEAMKQIGFEALIYDYTPVPYDLDG 60

Query: 75  DSIVSS-----DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITP------ 122
             ++ S     +   D+          +   V Q       P F    P+  T       
Sbjct: 61  AIMIPSLLKLRNISDDMHDYWFNRGYFRIDPVQQVALRTSAPFFWNYDPDADTLINRFMT 120

Query: 123 -----------PAGMDNRYCSLTFDVARIRIGLM-LLFPKGRIILRDRLW---EIGLLAA 167
                         M                 +  + F + +   R  L    +  LLA 
Sbjct: 121 EDTAPVTRYLSERDMSTGVTVPVHMPRGDYATVTGIRFGRNKDFERHALRYIADFNLLAH 180

Query: 168 YQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                  S      K      LT RE ECL   +EG ++ EI+ I+  S  TV  ++ + 
Sbjct: 181 VFHETAYSLFDTRAKSVGTIRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAA 240

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            +K   + R+ A+  A    ++
Sbjct: 241 TKKLGARNRTQAVVRATHYRLL 262


>gi|188583049|ref|YP_001926494.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346547|gb|ACB81959.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 220

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 22/228 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V       +   R++     +         +     S +L  R        +D 
Sbjct: 5   RIRVLVVDDHAVVREGYRRLLEKQPDIEVVAEAEDAS-----SAYLRFRATAPDVVIMDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D +R +  +        ++           T+   +         Y + +  
Sbjct: 60  SMPGRGGIDAIRQIRQA-----DPTVRILVFSM---HATVSYAVQAIRAGARGYITKSSA 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +F     +  +    +        +  +   V      EL+ RE E L  
Sbjct: 112 SDLMVEAVRNVFQNKLTLCAEISKILAT------SRLEEQVVALD---ELSPREFEVLRM 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           I + K+++EIA    ++  TV NY  +I  K    +    + + +R+ 
Sbjct: 163 IIDAKSTEEIAAAFHLTPKTVANYHYAIKSKLGVSSDIDLVYFCMRHG 210


>gi|118471878|ref|YP_884521.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173165|gb|ABK74061.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 32/241 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +V +V+  +       V    T S  +  +   D                GA    L++
Sbjct: 7   DKVRVVVGDDHPMFREGVVRALTSSGDIDVVAEADN---------------GADALELIK 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       +   +   E             L            +    
Sbjct: 52  VHRPAVALLDYRMPQLDGAQVAAAVVRDELP--------TRVLLVSAHDESAIVYSALQQ 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + S     + +   ++       +I         L A     + +  +        
Sbjct: 104 GAAGFLSKESTRSELVSAVLSCAKGRDVITP------HLAAGLAGEIRRRNEPDVP---V 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I++G++   +A  L ++ +TV  ++  +  K     R+ A+A A+R ++
Sbjct: 155 LSPREREVLNLIAQGRSIPAMAKELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRHL 214

Query: 246 V 246
           +
Sbjct: 215 L 215


>gi|256827483|ref|YP_003151442.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583626|gb|ACU94760.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 215

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 15/228 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     LA ++  +  +    +        G +   L          +D  
Sbjct: 1   MRVIIVDDDPIVVRSLAAILSAEGDIEVVGQA-----DCGPAAVTLYSQLNPDILLMDIQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +         +  +  +           ++   F      +         Y     D+
Sbjct: 56  MPAGDGLSAGEVILKTHPN--------ARIVYLTTFSDDEYLVRALKMGARGYLIK-QDI 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A+I   L        ++  D L   G  +    +      +       LT RE E +  +
Sbjct: 107 AQIAPALRSAMAGMSVLEGDILERTGAFSRSVEDFSAD-RLRAETFSVLTDREYEVVEAV 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG  + E+A  L +S  TV N+I++I+ K   K R+       R ++
Sbjct: 166 AEGLDNAEVAQTLYMSEGTVRNHISTILAKLGLKNRTQIAVRYYRASL 213


>gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
 gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440]
          Length = 231

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 68/236 (28%), Gaps = 16/236 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE 71
              D +R      +   +            +   + +  + E         L R  L   
Sbjct: 6   GDPDPRRRPI--RILVVAGQPLLRTGYRTVLDAEVDLTVVAEAATDGEAVELARRLLPDV 63

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD+  +        R +  S              L           +         + 
Sbjct: 64  VLLDAR-ARGAGVATTRTIVESGLP--------VRVLILARADLEENVLGALCAGARGFL 114

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                   +   +  +     +     L   +  LA    +   +          LTGRE
Sbjct: 115 PPEVSSTELAAAIRSVAAGDAVAAPRILDRLLNQLADLLPDPAATPSRLLDS---LTGRE 171

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G+++ EIA  L +S  TV  ++ +++ K   + R  A+  A  + ++
Sbjct: 172 REVLVQVARGRSNAEIAQELSVSETTVKTHVGNVLTKLRLRDRVQAVVLAYESGLI 227


>gi|167567132|ref|ZP_02360048.1| probable two-component response regulator, LuxR family protein
           [Burkholderia oklahomensis EO147]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E R   V   P     L  ++     +S    +       G   +   +        LD 
Sbjct: 11  EIRILVVEDHPLLRLGLKNLLDASPPLSVVDEVSN-----GLEVYAACQRLNPDIVLLDL 65

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D++      +  + +  L           H     +       N Y      
Sbjct: 66  GLPGMNGLDVI-----HQLRRRWPDLGILVVTAETTEHRASAALAAG---ANGYLLKNSS 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  ++    +I      +             +          LT RE + L  
Sbjct: 118 KQTLLDAIWKVWRGHTVIDPALNVDQV-----------TTKAVPDGAVALTPRERQVLKL 166

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ISEG  + +IA  L I+  TV  +  ++MRK      +    +A R  +
Sbjct: 167 ISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHRLGL 215


>gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 208

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 5/207 (2%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF-DLVRCMALSEKDKYYNVL 102
            +     AL     + HF+LV      +    +   S     D           +   ++
Sbjct: 2   DFFRLFKALAAVHDSEHFVLVELSTDDKPLDLNRGHSLHNVSDAFLDAEAVSAKRDDPLV 61

Query: 103 QRPTELFCPVFHTLPENITPPAGMD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                   P         TP        +            R GL+LL  + R +    +
Sbjct: 62  ACLLTSTAPKSFDATTTKTPLIARCGSKSAVVVPLHTAVGKRFGLILLRNRERPL-HSEV 120

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
             I   A+     +    +       L+ RE++ ++W SEGKTS EIA+ILG+S +TVN+
Sbjct: 121 ALIAYDASIVFQRYFEVVLSLDSISGLSEREIQIVSWTSEGKTSSEIAIILGLSEHTVNS 180

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           YIA+I+RK     R+  +A A+RN ++
Sbjct: 181 YIAAILRKLQVVNRAQMVASALRNGLI 207


>gi|329907334|ref|ZP_08274644.1| two component transcriptional regulator, LuxR family protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546995|gb|EGF31889.1| two component transcriptional regulator, LuxR family protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 213

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +  T  +    E   G +   LV   +F    +D  +     
Sbjct: 7   RVMLVDDHAVVRSGVRLMLGTTADITVTGEADSGQAAMKLVATQVFDVALVDIALPGRNG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L++ +   +         R   L   ++      +         Y +     A I   
Sbjct: 67  LELLKQLRQEQ--------PRLAVLMFSMYSEEVYAVRALRQGAVGYLTKDSSAAVIIDA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +       + +    +  +  L                    L+ RE+E +  ++ G + 
Sbjct: 119 VRTAAAGRKYVSPALVERLAELLGEGVRFPHEA---------LSDRELEVMKLLASGDSL 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S +TV  Y A I+ KT  K  +    YA+ + ++
Sbjct: 170 VQIAATLHLSASTVTTYRARILEKTGLKGNTALSRYAIEHGLI 212


>gi|296160783|ref|ZP_06843596.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295888875|gb|EFG68680.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 218

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       V  L     +   +            +   +              
Sbjct: 3   LRILLVDDHAVVRQGVRQLLLDRGVAREVTEAQSGAEALDAVARFS-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      ++++ +           +          +      +       
Sbjct: 49  -YDVVLLDISLPDMNGVEVLKRLKRK-----APRVAVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T D A++   +  +    + +       +          + S+D       +L+
Sbjct: 100 AGYLSKTVDTAQMIGAIQQVAAGRKYVSPAMAEALA--------DYVSFDGEQMPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IAV L +S  TV+ Y   ++ K   +  +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIAVALSLSVKTVSVYRTRLLEKMKLRNNAELTFYVMSNRLV 210


>gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 14/216 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD----SIVSSDWPFDLVRCM 90
           R+   D  +     + AL +  G                L      +V SD     V  +
Sbjct: 5   RIALADDQILVRAGLRALLQQQGVEVACEADDGQALLDALTTTSVDVVLSDIRMPGVDGI 64

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
                 +      R   L    F      +         +         +R  +  +   
Sbjct: 65  QA--LVQLRARGDRTPVLLLTTFDDSDLLLRATEAGAQGFLLKDAAPEDLRDAIARVAAG 122

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             ++          ++         +          + REV  L  ++ G ++ EIA  L
Sbjct: 123 ETLLQP--------VSTDPVRARYQFRDQQPPSETFSEREVAILRLLAGGYSNKEIARTL 174

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 175 FLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|323155344|gb|EFZ41527.1| transcriptional regulatory protein uhpA [Escherichia coli EPECa14]
          Length = 173

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 27/179 (15%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           F  +     Q    D  +      +L+  +            +    +   V  +     
Sbjct: 17  FAQLPGRGVQVCICDISMPDISGLELLSQLP-----------KGMATIMLSVHDSPALVE 65

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    + S       +   +  +   G  +  D   ++                  
Sbjct: 66  QALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLA----------------S 109

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+   LT RE +    +++G    EIA  LG+S  TV+ + A++M K            
Sbjct: 110 GRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARR 168


>gi|207722024|ref|YP_002252462.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206587198|emb|CAQ17782.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 232

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 68/245 (27%), Gaps = 25/245 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+  +++ +  +D      ++     S  +  +            +              
Sbjct: 9   ELPAIHVAIVEDDPGFLDALTQALVCSPDMRLIGVAGSRAEGLRLL-------------- 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      D++   A              + +    F      +   
Sbjct: 55  -DGTPADVLLVDLGLPDGSGIDVIEAAARKWS--------ACSIMVSTHFGDETHVMRSI 105

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWG 181
                 Y       ARI   +  L   G  I      +I                     
Sbjct: 106 EAGAAGYLLKDSSAARILDEIRSLASGGSPISPIIARQILARFRQGGARGAVDEAPPASA 165

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K    +++ AI  A 
Sbjct: 166 SPPLLSAREKEVLDLITKGFTTQEIAKLMALSHFTVRTFVRRIYSKLKVTSKAEAIYEAR 225

Query: 242 RNNIV 246
              ++
Sbjct: 226 TLGLL 230


>gi|302878601|ref|YP_003847165.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581390|gb|ADL55401.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 211

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSSDW 82
            L    D       +   ++    +    E V A   +  L     F    LD  +    
Sbjct: 3   RLLIADDHAIVREGIKKILALAQDIQVEAEAVDAIEVMKHLDDGVTFDVLLLDLSMPGVT 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L+  +        Y              +               + +   D   +  
Sbjct: 63  GMSLITQIKAQ-----YPAFPILIFSM---HNEAQIASRAIKAGAAGFIAKDSDPEILLE 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      I      ++   A                   L+ RE+E    +  GK 
Sbjct: 115 AIRRVAAGRNYIDPALAEQMAFDAL--------MPPKSAPHAILSSRELEIFALLVAGKR 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++IA IL IS  TV+ +  +++ K    + +  + YA+ + +
Sbjct: 167 VNDIAYILNISNKTVSTHKLNLITKMKLHSTADLVHYALEHKL 209


>gi|227544258|ref|ZP_03974307.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300910231|ref|ZP_07127691.1| transcriptional regulator [Lactobacillus reuteri SD2112]
 gi|227185771|gb|EEI65842.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300892879|gb|EFK86239.1| transcriptional regulator [Lactobacillus reuteri SD2112]
          Length = 223

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 35/243 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++          V +L  + D    +      +                         
Sbjct: 9   RVLVADNYPIIRMAVKNLVEQLDNFKVIAEETTGID--------------------ASLR 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL---PENITPPAG 125
            ++  +D I+              +       + +        +F +             
Sbjct: 49  VEQGDIDIIIMDLAMPPG-----ENGLITIKRIHEHFPNTKIIIFSSRNEPQYINQAIYN 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KD 183
             N Y   +     +   L       + +         ++      + K    H+     
Sbjct: 104 GANSYIFKSSSPKELVHALRHAINGEKYLD-----NNIMVTKKDLLVIKGGSPHFDLGNY 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  I  G T+ EIA+ + IS  TV  +   IM+K    + +  + YAV++
Sbjct: 159 IALSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKH 218

Query: 244 NIV 246
            +V
Sbjct: 219 QLV 221


>gi|134095064|ref|YP_001100139.1| LuxR family transcriptional regulator [Herminiimonas
           arsenicoxydans]
 gi|133738967|emb|CAL62015.1| Response regulator receiver, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 215

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   ++ T  +        G+    L R  L     LD  +      
Sbjct: 9   VLIADDHAIVREGLKQILADTRDIVVAGHAENGSEAIRLSREGLCNVLLLDISMPDRSGI 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++++ +           +                 I         Y +     A +   +
Sbjct: 69  EVLKQVRKE-----SPKIAILMLSM---HREDQYAIRSLKAGAAGYLNKQSAPAELVTAI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + I  +   E+                       L+ RE + LT I+ GKT  
Sbjct: 121 RQVAAGRKYISAELAQELANQINDNHETPLHE--------TLSDREYQTLTMIASGKTVS 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  T++ Y + +++K   +  +    YA++N++V
Sbjct: 173 DIAAELVLSVKTISMYRSRLLQKMKLRHNAELTHYAIKNHLV 214


>gi|330830693|ref|YP_004393645.1| two-component system response regulator, LuxR family [Aeromonas
           veronii B565]
 gi|328805829|gb|AEB51028.1| Two-component system response regulator, LuxR family [Aeromonas
           veronii B565]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 32/238 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q  IV+  +       +      +   A+++  D   S T               LL  
Sbjct: 3   SQFTIVIADDHPLFRGALYQAVHMAIDDAQLLEADSIDSLTS--------------LLGE 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +     F+ +  +    +     ++         +             
Sbjct: 49  HPEVDLLLLDLKMPGANGFEGLAHL--RGQYPDLPIVVVSASEDAAII------QQVLRL 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +  +  +   L  +      +                   +       K   
Sbjct: 101 GALGFIPKSVPMKELVNALNTVIGGDNWVPE---------GISLHPESEDGPDFASKLAS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT ++ + L  + +G  + +IA  L +S  T+  +I +I RK   K R+ A+  A++ 
Sbjct: 152 LTPQQYKVLIMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAV-IALQQ 208


>gi|323526677|ref|YP_004228830.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323383679|gb|ADX55770.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 262

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 68/237 (28%), Gaps = 17/237 (7%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLF 69
            L R     T  +  +    D           V+    M    E   G     LVR   F
Sbjct: 41  ALERLHRTDTKPMIRVLIADDHAIVRGGFRQFVADEPDMCVAAEAATGDETISLVREQAF 100

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      D +R +     ++          L    +      I       N 
Sbjct: 101 DVVLLDIAMPDKNGIDTLRVIKQVRPEQG--------VLILSGYPESQYAINLLRAGANG 152

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +   +   I   +  +    R +       +                       L+ R
Sbjct: 153 YLNKDCEPDEIVRAIRAVARGHRYLSEAVADTLA--------DNLDKPAAARPHEALSER 204

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E +    ++ G+   +IA  L +S  TV+ Y A ++ K      +    YA++N ++
Sbjct: 205 EFQIFCKLAAGQIPTQIAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIKNGLI 261


>gi|237880797|gb|ACR33055.1| response regulator [Actinoplanes garbadinensis]
          Length = 231

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 8/229 (3%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
             S     P  +D+L        ++   M + +   +  A+          ++ +   ++
Sbjct: 1   MRSAARGGPIVTDVLVVDGEALVSIGIKMILESTGGFAVATTDRENLRSAVEQHRPAVVL 60

Query: 79  SSDWPF--DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
                   D +  +           +   T L  P        +    G    +      
Sbjct: 61  LDGHSAQSDGLEVLDQLRALSSPPAIAMLTTLAPP-----ELVLDSLRGGACGFLLRDSQ 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  L     ++  +    + + A  + +   +      +  +L+ RE   L  
Sbjct: 116 PEQLVAAVRALAEGSIVLAPEA-SSVVVRAGSRGSAAGAGSPACERVKQLSDREQSILRL 174

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  G T+ EI+  L +S  TV  +++ I+ K     R  A   A  + +
Sbjct: 175 LGAGLTNAEISRQLFLSAATVKEHVSVILSKLGVANRVQAAVLAYASGL 223


>gi|225568587|ref|ZP_03777612.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM
           15053]
 gi|225162603|gb|EEG75222.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM
           15053]
          Length = 206

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +D   ++ +  +    D    +                    G     L    
Sbjct: 1   MNILVVDDDILVSNALKTILESDDT---LHVAGTGED------------GEDAVRLYGEL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D  R +        Y   +         F      +       
Sbjct: 46  KPDVLLMDIRMKKLNGLDASRMILSD-----YPDARILL---LTTFSDDEYIVKALKCGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   I   +  +     +   +       + +   ++ +          ++ 
Sbjct: 98  KGYLLK-QDYNSIIPAVKAVHTGQTVFGTE-------IISKIPDLLQKKSGFDYASCDIG 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   +T +++G ++ EIA  + +S  TV NY+++I+ K   + R+    +  ++
Sbjct: 150 EKEYTLITLVADGFSNKEIAEKMFLSEGTVRNYLSNILDKLDLRDRTQLAVFYYQH 205


>gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ +        +      +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYWENNVIL 67

Query: 121 TPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGRIILRDRLW-EIGLLAA 167
           +    +   +                 D       L ++  K   I  ++   +I     
Sbjct: 68  SGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLT 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+  GKT  E+AVIL I+  TV  ++ ++M
Sbjct: 128 KLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K      + A+       ++
Sbjct: 188 KKLGVNNATHAVKLGTELRLL 208


>gi|218462212|ref|ZP_03502303.1| probable two-component response regulator protein [Rhizobium etli
           Kim 5]
          Length = 180

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 53/185 (28%), Gaps = 18/185 (9%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              ++   +      LD  +       +   +A           +        V   +  
Sbjct: 13  DAAMIALNNRPDVMLLDVSMPGGGLAAIGDVLA------RSPTTKVLM---LTVSEEVDT 63

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +         Y         +   +  +    R I      ++   + +        D 
Sbjct: 64  LLGALQQGAMGYVLKGVGSRGLAEAIQTVLSGSRYISPTMSTKVMENSLH--------DS 115

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K+  LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A  
Sbjct: 116 ASDKNS-LTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAAL 174

Query: 239 YAVRN 243
                
Sbjct: 175 QWRER 179


>gi|169833204|ref|YP_001695355.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|168995706|gb|ACA36318.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
          Length = 199

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQNMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +     +    V+          F              + Y      V
Sbjct: 56  MPVKTGLEVLEWIRSERLETKVVVV--------TTFKRAGYFERAVKAGVDAYVLKERSV 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|110637671|ref|YP_677878.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280352|gb|ABG58538.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
          Length = 227

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 67/236 (28%), Gaps = 24/236 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +++ + +  + E     V  L +    +  +            +             
Sbjct: 1   MLTKKIKVFIADDHEIFRDGVRQLISNESDMEVVGTASSGEEALELLK------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      +D  +S     +  R +  ++ + +         LF  ++      +T 
Sbjct: 49  ---DNHADVVIMDIRMSGMNGLETSRAILKNDSNTH--------ILFFSLYDRDDYVVTA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y            G+  +         D    +        ++  + ++    
Sbjct: 98  LEMGASGYILKDTSNKIFLKGIRAVSNGQFYFTGDVTDVLIKKYKELKDVKNTPEISSSS 157

Query: 183 DFELT-GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  RE + L  I EGKT+ EIA    +S  TV  +  +I+RK         I
Sbjct: 158 IQSSLSKREYQILNRIREGKTNKEIAEEYNLSVRTVETHRMNILRKFNVSNFDELI 213


>gi|302533866|ref|ZP_07286208.1| two component transcriptional regulator [Streptomyces sp. C]
 gi|302442761|gb|EFL14577.1| two component transcriptional regulator [Streptomyces sp. C]
          Length = 218

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 65/222 (29%), Gaps = 13/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + + V G +    V         LD  +     
Sbjct: 4   RVVIADDQDMVRTGFRMILESVPDIEVVADVVDGEAALAAVAEHRPDVLLLDIRMPKLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R ++  +             +    F           G  + +       A +   
Sbjct: 64  LEVTRRLSGQDTP---------RIVIVTTFDLDEYVHAALHGGASGFLLKDASPAMLVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +       A    +          LT RE + +  ++ G T+
Sbjct: 115 VRAAAAGDALVSPAITVRL---LRDMAPRTPAARTARRPAEPLTERERDVVRCLARGLTN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S +TV  ++A++  K   + R    A+A  + +
Sbjct: 172 AEIAAELYVSLSTVKTHLANVQAKLDARNRVEIAAWAWESGL 213


>gi|319764111|ref|YP_004128048.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330823614|ref|YP_004386917.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317118672|gb|ADV01161.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329308986|gb|AEB83401.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    S  + +  + E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLRQFFSEHVDLRVVGEAANGREAIDLVRAQEIDVLVMDLSMPGQSGLDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        I       + Y +   D   I   +  +
Sbjct: 67  AMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECDPKEIVEAIRAI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +       +      + +             +L+ RE +    ++ G+T+ +IA
Sbjct: 119 ALGRRYLTPAVAELLAQQLNRKGD--------APPHEQLSEREFQVFLKLARGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 171 KSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNRLI 209


>gi|297191011|ref|ZP_06908409.1| two component system DNA binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150723|gb|EDY65386.2| two component system DNA binding response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 213

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 59/222 (26%), Gaps = 19/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +        + E   A               +D ++      
Sbjct: 9   RLLLADDHPVVRAGLRAVLDTETGFEVVGEAATAE----AAVRRAAMGGVDVVLMDLQFG 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +     +          R        + T  + I         Y         +   +
Sbjct: 65  TGMHGCEATAAISALPDGPRVL--ILTTYDTDADIIAAVEAGAAGYLLKDAPPEELAAAV 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +       +              D        LT RE+E L  + +G ++ 
Sbjct: 123 RTAAAGRSALAPAVAHRL-------------MDRMRTPAEALTKRELEVLQLVGDGLSNL 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 170 QISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211


>gi|261404248|ref|YP_003240489.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261280711|gb|ACX62682.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 217

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 63/212 (29%), Gaps = 9/212 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D L     L   +     M  +     G     L      +   LD  +        +
Sbjct: 9   ADDQLLTREGLRTILDLEDDMEVVGVAKNGEEACELADVLQPRLVLLDIQMPVMDGIQAL 68

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +  S  D +         L    F      +   A   N Y     D  ++   +   
Sbjct: 69  KHIKQSHPDIF--------ILILTTFIETDYIVEGMAHGANGYMLKDMDADKMIASIRDT 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                I+      ++    +  +        +      LT RE E    + +G  + EIA
Sbjct: 121 IAGQFILPAPVAAKLAARMSRMSEGHSGMLRNRLDRIRLTEREEELARLMVQGLNNREIA 180

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +L I+  T  NYI+++  K     R+ AI  
Sbjct: 181 DMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 212


>gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 209

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 20/222 (9%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L  T++    +  + E   G     ++         +D  +      
Sbjct: 7   ILLVEDHAFTRDGLRATLNLEPDLRVVAEARSGEEALEVLTGRPVDVAVVDIGLPGMDGI 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +      + +  ++              E     A   + YC  +     + + +
Sbjct: 67  ATAREI-----KRRWPGVRIVM---LTAHDLREEVFASLASGADAYCLKSASPDLLLLAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +               A+              LT RE++ L  I++G  + 
Sbjct: 119 RAAAAGSAYLDP-----------QVAHHVLGGVRMPEAHSPLTPRELDILRLIADGLPNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  LG+S +TV  +I  I+ +     R+ A   A+R  ++
Sbjct: 168 DIAEALGVSVSTVKLHIQDILHRLQAADRTQAAVKALRAGLL 209


>gi|87120553|ref|ZP_01076447.1| putative regulator in two-component regulatory system; LuxR family
           protein [Marinomonas sp. MED121]
 gi|86164196|gb|EAQ65467.1| putative regulator in two-component regulatory system; LuxR family
           protein [Marinomonas sp. MED121]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 20/222 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  L   +         T+ +  +   L +        LD  +     
Sbjct: 9   DHPLFRGALKGALQGLFDNIEIHE-----TQDLDTTLSFLAQAPDLDLLLLDLNMPGS-- 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL   + +        V     E    V                 +   T   + I   
Sbjct: 62  GDLYGLIRIRSDFVDLPVAVISGEEDTSVMA------KVLEAGALGFIPKTSQPSDIAQA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +          L     N  K       +  ELT  + + L ++ EG  +
Sbjct: 116 INAILEGEIWLPEH-------LKDAVLNQPKPDLDMVKRVSELTPSQYKVLCYLHEGLLN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L IS  TV  +I +I +K +   R+ A+  A    +
Sbjct: 169 KQIAYELNISEATVKAHITAIFKKLSINNRTQAVLIASELKL 210


>gi|330826718|ref|YP_004390021.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|329312090|gb|AEB86505.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 209

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +    T S  +               +                  
Sbjct: 2   IQVVLCDDHAVLRRGIRDTLTESPDICVTGEAGSYPELREVLRTAA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  S        ++       P        +       
Sbjct: 48  -CDVLLLDLNLPGRSGLEVLASLKESH-----PAIKVLIVSMYP---EDQYALRCLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D  ++   +  +    + +  +    +            +          L+
Sbjct: 99  HGYANKAGDPVQLIAAVHTVMQGRKYLTPEVAQLLA--------DSLAQPTPELPHESLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +V
Sbjct: 151 ERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLRLANNAELTVYAIRNRLV 209


>gi|330822044|ref|YP_004350906.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
 gi|327374039|gb|AEA65394.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           gladioli BSR3]
          Length = 215

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 24/227 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +                + +      L  +       +D 
Sbjct: 10  AARLLLVDDHPLVRDGLKMRLEAVPGFVVVGEAGKAEDAL-----ALAEYLEPDLALMDV 64

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       L               ++            +           + Y      
Sbjct: 65  TMQGMNGITLAGIFHERF-----PAIRVVMLSM---HDNVEYVTQAVRAGASGYLLKDSP 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I  G+  +                      A          G    LT RE++ L  
Sbjct: 117 ASDIVRGIGAVLAGQTFFSEG-----------LAARMIQASAGAGPVERLTPRELDILDA 165

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA+  G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 166 LAEGLSSKQIALQNGLSVRTVETHRLNLKRKLGIEGQAELIKFAVEH 212


>gi|325982544|ref|YP_004294946.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325532063|gb|ADZ26784.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 218

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
               ++ ++L  +       ++ +      +  +            +             
Sbjct: 1   MSTNKIKVMLVDDHAMLRHGMAMMINMESDMEVIAEAGDGNEALAILKK----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      LD  + +   F++++ M           +     LF  +          
Sbjct: 50  ---NESVDIVLLDVTLKTVSGFEVIKSMHAL--------IPTLPVLFVSMHDESVYAERA 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +      + +    ++    A   +  +        
Sbjct: 99  LRAGARGYVMKQEPGEILLAAIHEVLKGNVYLSKQMHEKLLKRIASGHSEPEQLIN---- 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT  E E L  I +G +S EIA +L  S  T+  +  +I  K   K  +  I YA R
Sbjct: 155 --TLTPSEFEVLHLIGQGHSSQEIAKLLCRSIKTIETHRFNIRVKLHLKDGADLIRYATR 212


>gi|228900420|ref|ZP_04064648.1| Response regulator [Bacillus thuringiensis IBL 4222]
 gi|228907528|ref|ZP_04071385.1| Response regulator [Bacillus thuringiensis IBL 200]
 gi|228969652|ref|ZP_04130440.1| Response regulator [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228790061|gb|EEM37855.1| Response regulator [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228852020|gb|EEM96817.1| Response regulator [Bacillus thuringiensis IBL 200]
 gi|228859218|gb|EEN03650.1| Response regulator [Bacillus thuringiensis IBL 4222]
          Length = 195

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 14/183 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       +        LD  + +    +  + +             +   L    F   
Sbjct: 20  GEEAVAYCKKHEVDIALLDVRMPNMNGVEATKFICEET---------KTKPLILTTFDDD 70

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D  RIR  +  ++    ++    L +I              
Sbjct: 71  EYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIKSNLMESKEEECKI 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D         T RE+  +  I++G ++ EI+  L IS  T+ NYI S++ KT  + R+  
Sbjct: 131 D-----KSLFTERELSIIALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQI 185

Query: 237 IAY 239
             Y
Sbjct: 186 AIY 188


>gi|21225909|ref|NP_631688.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289766932|ref|ZP_06526310.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|11323234|emb|CAC16981.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697131|gb|EFD64560.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 14/216 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            +A  + +D     T+   A     G +   +V         +D  +      D  R + 
Sbjct: 2   RMALRLVIDGEPDLTVVAEA---ADGDAALAVVDEQRPDVVLMDVRMPGRDGLDTTRELL 58

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                           L    F +    +         +        RI   +  +    
Sbjct: 59  ARPAPP--------RVLMLTTFDSDDLVLGALRAGALGFVLKDTPPPRILDAVRTVADGH 110

Query: 152 RIILRDRLWEIGLLAA---YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             +       +   A       +  ++ +    +   LT RE E    +++G  + EIA 
Sbjct: 111 PALSPAATARVIAAATGPDSSHSRDRTREAARERLSVLTEREWETARAVADGLGNPEIAE 170

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L I+  TV  +  S+  K   + R           
Sbjct: 171 RLHITVATVKAHTGSLFAKLGVENRVQIALLVRDAG 206


>gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 265

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCM 90
               +       + +   + +G    +     +  +     ++ S     +   D+    
Sbjct: 12  FTAHETLDGRIDQAFEAMKQIGFEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT------------LPENITP------PAGMDNRYCS 132
                 +   V Q       P F              + ++  P         M      
Sbjct: 72  FNHGYFRIDPVQQVALRSTAPFFWNYDTDADTLIKRFMSDDTAPVARYLNERDMSTGVTV 131

Query: 133 LTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---E 185
                      +  +               + +  LLA        S      K      
Sbjct: 132 PVHMPRGDYATVTGIRFGRNDDFERYALRYIADFNLLAHVFHETAYSLFDKTAKSVGTVR 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K   + R+ A+  A    +
Sbjct: 192 LTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 200

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 67/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +S L    + +  +   +        + +L               
Sbjct: 1   MRVLVAEDQGMLRGALSALLDLEEDIEVVGQAEDGEQALEMIRSL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D+   +   +             +    F              
Sbjct: 46  KPDICVMDIEMPKLTGLDVAERLRADKHS--------CLVVILTTFSRSGYFQRAMKAGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +      +  +   L  ++   R I  +                      W  +  LT
Sbjct: 98  KGFLLKDSPIDELSAALRNVYAGKRAISPELALSF-----------------WEAENPLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L    EG  + EIA  L +S  TV NY++  ++K   K R  AI  A +N  +
Sbjct: 141 EREREVLRLAREGLPAGEIASRLFLSAGTVRNYLSEAIQKLDAKNRIDAIGIAEKNGWL 199


>gi|160934711|ref|ZP_02082097.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
 gi|156866164|gb|EDO59536.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753]
          Length = 212

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 17/215 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +    ++  + T   G     L R        +D  +      
Sbjct: 5   LLIIDDDALVCASLKTILETDPQVKVVGTGGSGREAVSLYRRLRPDVLLMDIRMDGLTGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 LF   F      I         Y     +   I   L
Sbjct: 65  EAGELILREA--------PEAKILFLTTFSDDEYIIKALKLGAKGYLIK-QNFESILPAL 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +   + + ++  L        +S D        ++ RE++ ++ +++G ++ 
Sbjct: 116 HAVESGQSVFGSEIVTKLPEL-------MQSGDKFDFAARGVSPRELDVISLVAKGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L +S  TV NY+++++ K   + R+    +
Sbjct: 169 EIAEALFLSEGTVRNYLSAVLDKLELRDRTQLAVF 203


>gi|167623909|ref|YP_001674203.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167353931|gb|ABZ76544.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 222

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ I+L  +     + +  L      +  +      +     +                
Sbjct: 3   EKITIILVDDHILVRAGIRSLLESIANVEVIKESGDGIEALSLLRT-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      ++ R +   +         +   L   +   +         
Sbjct: 49  -HQPTLLILDISLPGLNGLEVARSVTKMKT--------KTKILMLSMHSDVEYVAKALTI 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y      V  +   +  L    + I ++   ++ ++   + +  +  D+       
Sbjct: 100 GSHGYLMKESAVEELETAISTLINDKQYIGKNI--DLEMVDKLRGDSNQESDLIK----L 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R+ + L  I+EG ++ EIA  + +S  TV  + A IM +      +G + +A+R  +
Sbjct: 154 LTSRQRQILQLIAEGYSTREIAERMSVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRCKL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|15903856|ref|NP_359406.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|116516134|ref|YP_817220.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|168495059|ref|ZP_02719202.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|221232724|ref|YP_002511878.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|15459500|gb|AAL00617.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076710|gb|ABJ54430.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|183575076|gb|EDT95604.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|220675186|emb|CAR69771.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|332071979|gb|EGI82467.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 199

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRSEKLETKVVVV--------TTFKRAGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +  +                   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEMVMT-----------------RPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|330986356|gb|EGH84459.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011222|gb|EGH91278.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 220

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVAEMPGYAIIGETADGAQLSSLAQRL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    + +  +          V      L   +       +        
Sbjct: 49  PDIILLDIWMKSVDGLEALEHLLK--------VQPHCKVLILSMHTDPDMIMRALDIGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +   A       ++        + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNNERYLSPAIAHTVIERALRGTRSDRAQAAKER--YHLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 216


>gi|192360157|ref|YP_001981723.1| putative two-component transcriptional regulator, LuxR family
           [Cellvibrio japonicus Ueda107]
 gi|190686322|gb|ACE84000.1| putative two-component transcriptional regulator, LuxR family
           [Cellvibrio japonicus Ueda107]
          Length = 238

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 16/234 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW--DLFQEQKLDSIVSSDWPFDL 86
             D +          S           +G    +L         +++ +     ++P D 
Sbjct: 3   MEDYICETNNSKNIQSLFNLFEKYMSDIGFDRVILGLMTDHPRLKKEAEHGFLKNYPADW 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------ITPPAGMDNRY-CS 132
           V      +      V  +  +          +                  A + N    S
Sbjct: 63  VERYFDQKYVHIDPVRHKAYDAIGAYTWDELKASMQLSNKQIQMFNEAEDARLFNGVGVS 122

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           +      I         K   + +D L    L++      +            LT +E E
Sbjct: 123 MRGPGGAIAAVGAACSVKNGNLNKDILDAANLMSVQFYTCYWRLMEKKVTLVHLTAKEQE 182

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LTW + G T  +IA  L IS +TV+ ++ + + K   +  + A++ A+  +++
Sbjct: 183 ILTWSAAGYTKSQIAHKLCISVHTVDFHVRNCLAKLEAQNITHAVSRALNLSLI 236


>gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum
           V4]
 gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum
           V4]
          Length = 251

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 82/246 (33%), Gaps = 23/246 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSS- 80
           + L    ++    + +     +   +  + E + +S     LV+ +   E K    + + 
Sbjct: 4   TDLVKLLEIYDLSLQVRDQKEFKTVLKKIQELIPSSLIACGLVKINSLNEVKKMLKIINH 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMD 127
            +P DL+      +  K   V++    L   +                          + 
Sbjct: 64  SFPSDLIAFYLQQKYQKADPVVKTALRLRGNIVRRTEIFRYFQDNFRSQYLKDASDISLH 123

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI------GLLAAYQANMFKSYDVHWG 181
                   +    R  L     K           +        LA    +  +  +    
Sbjct: 124 TGLSFGIVEEKTYRASLFSFCDKEIEKSPRHETILNGLKYPLHLALLNCSHPQEVEKPAK 183

Query: 182 KDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +  + LT RE+E L WI +GKT+ EI+ IL IS  TV  ++ +I  K   + R  A+A A
Sbjct: 184 ESPQALTARELEILKWIMDGKTNWEISCILKISEATVKFHLKNIFLKLDVQNRCQAVATA 243

Query: 241 VRNNIV 246
               ++
Sbjct: 244 FHRRLL 249


>gi|157375006|ref|YP_001473606.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157317380|gb|ABV36478.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 219

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +      S    R    D   +   ++             
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALAGSFTNTRWFEADSAEALQSQLEN----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                   E + D ++             L     +Y  L            T+   +  
Sbjct: 50  -------DEVEFDLVMLDLQMPGSHGYSTLIHLRTHYPDLPVVVISAHEDNITISRAV-- 100

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +      +  +   L  +      +  D   E+  +     ++         K
Sbjct: 101 -HYGSAGFIPKLASMETLATALSAVLEGDIWLPADV--ELQSIDEDATDLMA------SK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LADLTPQQYKVLGMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|330953920|gb|EGH54180.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 11/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   V+       + E   GA    L +        LD  + S    
Sbjct: 5   LLLVDDHSLIRAGVRALVADMPGYTIVGETADGAQLASLAQQLRPDIILLDICMKSVDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D +  +          VL     L   + +     +       + Y       A +   L
Sbjct: 65  DALEHLLQ--------VLPHCKVLILSMQNDPDMIMRALDIGAHGYLLKDTTAAELEQAL 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L    R +       +  +                + + LT R++E L  I  GK++ 
Sbjct: 117 GALRSNERYLSPAIAQMV--IECALRGTPSDRAQAAKERYRLTARQLEILRLIVRGKSTR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 175 EIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRERII 216


>gi|302335419|ref|YP_003800626.1| two component transcriptional regulator, LuxR family [Olsenella uli
           DSM 7084]
 gi|301319259|gb|ADK67746.1| two component transcriptional regulator, LuxR family [Olsenella uli
           DSM 7084]
          Length = 224

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 17/238 (7%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  ++  + E     +S +  R+D +  ++  +       R+ A  E +G +        
Sbjct: 2   IRTMIVDDQEGVRMGLSLMLRRADGVTVVLEAEDGQQAIDRL-AQAEELGRA-------- 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      D    +     D           L    +          +   
Sbjct: 53  LPDVILMDVRMPRMDGIDATARITARWTD--------VRVLILTTYDEDDYAFGGLSAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   +  +     ++       +       A   ++          LT
Sbjct: 105 SGFLLKDVHAAELARAVRAVADGDAVLTPRITRAVIERGMRPAEKDEASLGFAASFRALT 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +++G ++ E+A  + I   +V   +  I+ K   + R        ++ +
Sbjct: 165 PREREVCRLVADGLSNAEVAERICIEPASVKRSVTRILAKLGLRDRVQLAVAWYKSGM 222


>gi|291452585|ref|ZP_06591975.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355534|gb|EFE82436.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 220

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ + L  + E     V  + +  D +  +           R+              
Sbjct: 3   ENGKITVFLLDDHEMVRRGVHEMLSAEDDIEVVGEAGTAAEALTRI-------------- 48

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    + D  V      D        E       ++            L + I   
Sbjct: 49  ------PATRPDVAVLDVRLPDGSGVEVCREVRSRDESVKCLMLTSYADDEALFDAIM-- 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y       A +   +  +     ++       +                   + 
Sbjct: 101 -AGASGYVLKAIRGADLLDAVRQVAAGHSLLDPAATARVLERL-----RGHGTPGDDDRL 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT +E   L  I EG T+  I   L ++  T+ NY+++++ K   + RS A AY  R 
Sbjct: 155 SGLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMERRSQAAAYVARM 214


>gi|111021179|ref|YP_704151.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110820709|gb|ABG95993.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 223

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 63/228 (27%), Gaps = 20/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V   P     +  ++     +    +  ++ E +       V         +D  
Sbjct: 12  IRVAVVDDHPVFRLGMVALLSTLDGMEVAAQASSVAEAL------DVVDGDVDVVLMDLE 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  R +                 L   +       +         Y     D 
Sbjct: 66  LGDGSGVDATRRLVERH--------PALRVLVVTMHEDDESLVASVRAGARGYLVKGADP 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+           A       +          ELT RE E L  +
Sbjct: 118 GEVERAVRAVANGEVILGAAVAAR----AMSFMAASRRVGPTVFP--ELTDREREVLDLV 171

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G  +  I+  L +S  TV N++++++ K     R  AI  A    +
Sbjct: 172 ARGYDNASISRRLVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 219


>gi|86751663|ref|YP_488159.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86574691|gb|ABD09248.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 224

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSI 77
           T   +HL    D       L   VS  +    + E         +L R        LD  
Sbjct: 3   TPASTHLIIADDHPLFRDALRLAVSSVVPGAKIGEAGSFEDLTAMLERDGDVDLVLLDLK 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F  +     ++      V+   ++    +  +L           + +    F V
Sbjct: 63  MPGISGFSGL-IYLRAQYPAIPVVVVSASDDVETIRRSLDF-------GASGFVPKRFGV 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   ++ +      +  D            A           +   LT ++V  L  +
Sbjct: 115 EKLGDAILRVLDGDVWVPPDV--------DLSAAADPETSKLRDRLVTLTPQQVRVLMML 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 167 SEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|146310497|ref|YP_001175571.1| two component LuxR family transcriptional regulator [Enterobacter
           sp. 638]
 gi|145317373|gb|ABP59520.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 61/189 (32%), Gaps = 19/189 (10%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A  +  +  +      +D  +  +    L++ +                 +   ++ T  
Sbjct: 38  AEAWPALSRNDIDVAVMDVAMPDENGLSLLKRLRQQRPGF--------RAIILSIYDTPA 89

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
              +      + Y +       +   +  +   G  +  D +  +           +   
Sbjct: 90  FVQSALDAGASGYLTKRCGPEELVQAVRSVGMGGHYLCADAVKAL-----------RGGQ 138

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E    + +G++   IA  L +S  TV+ + A+++ K    +    +
Sbjct: 139 PVSKVLDVLTPREREVFDLLVKGESVKAIAFTLELSHKTVHVHRANVLGKLQCSSTIELV 198

Query: 238 AYAVRNNIV 246
            +A+ N ++
Sbjct: 199 HFALDNQLL 207


>gi|111019249|ref|YP_702221.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110818779|gb|ABG94063.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 211

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + L  + E     +  L      L  +           R+                  
Sbjct: 3   TRVFLVDDHEIVRRGLVDLLGSVPDLEVVGEAASVGEAMARI---------------PGS 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +  +  +           L    +              
Sbjct: 48  GADVAVLDVRLPDGNGVELCRDLRTALPELQC--------LMLTSYSDDEALFDAIMAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   G ++       +        N  +S         EL+
Sbjct: 100 SGFVLKQILGTDLVAAVRTVGEGGSLLDSRATSAL-------MNRIRSAR-REDPLAELS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E      I EG T+ EIA  L ++  T+ NY++ ++ K   + R+ A   A   
Sbjct: 152 EQERAVFELIGEGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQAAVLATEL 207


>gi|83814348|ref|YP_444815.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294506669|ref|YP_003570727.1| hypothetical protein SRM_00854 [Salinibacter ruber M8]
 gi|83755742|gb|ABC43855.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294342997|emb|CBH23775.1| Conserved hypohtetical protein containing response regulator
           receiver domain [Salinibacter ruber M8]
          Length = 217

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 64/222 (28%), Gaps = 17/222 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V   P     LAR I  +  ++   +M +  E +     L           +D  +  
Sbjct: 5   ALVDDHPLLRKGLARTIEAEADLNVAGQMDSAEEALSEIEDL-----APDLVIVDISLPG 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L++ +           +Q                          Y         I
Sbjct: 60  MSGMELIKHLQSRV-----PDVQILVVSR---HDETLYAERCIRAGARGYVMKQEAGDDI 111

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +      +  +    +               +       L+ RE+E      +G
Sbjct: 112 VQAIRKVLNDRIFVSEEINERL----LQSMAEGGRERIMQSPLEVLSDRELEVFELTGQG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++ EIA  L +S  TV +Y A I  K    + +  + +AV+
Sbjct: 168 LSTREIAERLHLSVKTVESYRARIKNKLNLDSANELMKHAVQ 209


>gi|302543904|ref|ZP_07296246.1| LuxR family DNA-binding response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461522|gb|EFL24615.1| LuxR family DNA-binding response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 218

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 66/241 (27%), Gaps = 31/241 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E  ++ I L  + E     V  L      +  +           R+ A            
Sbjct: 3   EEGKIRIFLLDDHEVVRRGVRELLASEPDMEVVGEAGTAADALARILAT----------- 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      ++ R +   ++            +    F          
Sbjct: 52  ----RPDVAVLDIRLPDRSGVEVCREIRSRDETIRC--------MMLTSFADDEALFDAI 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-K 182
               + Y       + +   +  +     ++                   +        +
Sbjct: 100 MAGASGYVLKDIRGSELLAAVRDVAAGRSLLDPVATAR-------VLERLRGGAAKPDDR 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + RS A A+  R
Sbjct: 153 LSSLTEQERRILLLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVAR 212

Query: 243 N 243
            
Sbjct: 213 M 213


>gi|149024961|ref|ZP_01836341.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|225859757|ref|YP_002741267.1| response regulator [Streptococcus pneumoniae 70585]
 gi|147929454|gb|EDK80449.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|225720998|gb|ACO16852.1| response regulator [Streptococcus pneumoniae 70585]
 gi|301794941|emb|CBW37404.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|332200013|gb|EGJ14087.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 199

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +     +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRSERLETKVVVV--------TTFKRAGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|312173141|emb|CBX81396.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           amylovora ATCC BAA-2158]
          Length = 209

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 65/240 (27%), Gaps = 34/240 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E Q+ ++++  +       +  L         +                    G     
Sbjct: 1   MEAQKYSVLIVDDHPLLRRGLHQLLAMEPRFEVIAEAGD---------------GEEALF 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             R  L     LD  +      + ++ +  S              +         +    
Sbjct: 46  KARQLLPHLILLDLKMQGMSGLETLKALRSSGIS--------SRVVVLTASALSRDFTAL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     +   +   ++ +                L A+     +K        
Sbjct: 98  QQAGAEGYLLKDSEPEDLLAQIIEVAEGRVARSP------CLQASGPVESWKC-----DP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  ++ G  + ++A  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 LATLTPREQEVLKEVASGLPNKQVAENLAISEQTVKVHIRNVLRKLNVRSRVAATVLWLE 206


>gi|307327309|ref|ZP_07606496.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306886988|gb|EFN17987.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 212

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +     + V  L    D +  +                    G +   LV   
Sbjct: 6   LRIVVVDDHTVMRAGVIALLAAEDSIEIVGEAGD---------------GRAALDLVERY 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +             R   L    + T  E         
Sbjct: 51  DPDVALVDLRMPVLDGVATTTEIVAR--------YPRTRVLILTTYDTDTEIERGVEAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   +        ++      ++                       LT
Sbjct: 103 IGYLLKDTTREQLVDAIHAAARGETVLAPRVAEKLVARMRRPVQEP------------LT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G T+ EI   L I+  TV  ++  +  K     R+ A+  A+   ++
Sbjct: 151 DRETEVLGAVADGLTNAEIGRRLVIAEATVKTHLLRLFAKLDVNDRTRAVVVAMERGLL 209


>gi|299068412|emb|CBJ39636.1| putative response regulator, LuxR family [Ralstonia solanacearum
           CMR15]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 57/238 (23%), Gaps = 34/238 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  +       V          A +               L+             
Sbjct: 4   PVKLLLVDDHPLVRDGVRVRLEAVPHFAVVGEAGEAAGALEAARTLS------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +       L                     L   +   L          
Sbjct: 51  --PDLVLMDIGMRGMNGIALTEQFGER--------FPEIAVLVLSMHDNLEYVRQVIRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       + +   +  +                      A       V       L
Sbjct: 101 ARGYVLKDAPASELVEAIDAVLAGRPFYSA-----------QLAMRMAEQAVAPIPAEAL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE + L  +++G ++  IA  LG+S  TV ++  S+ RK   + ++  + +AV   
Sbjct: 150 TPRERDILDGVAQGWSNKRIADELGLSVRTVESHRLSLKRKLGIEGQAELVKFAVEAG 207


>gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 210

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 26/222 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSSDWPF 84
           R+   D  +     + AL +  G                +          D  +      
Sbjct: 5   RIALADDQILVRAGLRALLQQQGVEVVCEADDGQGLLDALAIHTVDVVLSDIRMPGLDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +             R   L    F      +         +         +R  +
Sbjct: 65  QALEHLRARG--------DRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++          ++         +          + REV  L  ++ G ++ 
Sbjct: 117 ERVAAGDTLLQP--------VSTDPVRARYQFRDQQAPRETFSEREVAILRLLAGGYSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 169 EIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|94497064|ref|ZP_01303637.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
 gi|94423436|gb|EAT08464.1| transcriptional regulatory protein [Sphingomonas sp. SKA58]
          Length = 253

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
              +        + A    +G   F L+     +     S+  + +P   +  +      
Sbjct: 22  QRAETLGDLHGTIDAAVRDLGFRWFTLLHNIDLRRGDEQSLFLTTYPSAWLEEVLEERHY 81

Query: 97  KYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIRIG 143
               +          +                   +      + + Y             
Sbjct: 82  LEDPIHAACARTPSGLAWDRVGDVLELTPRQRGILDRARDHDLASGYSLPIRTPGEPEAI 141

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISEG 200
                 +   +  + +    LL +   +  +              L+ R+VEC+  +++G
Sbjct: 142 FTAARSRDEPLSAEEVLTARLLGSVAYDRARELLGERAGPLACVPLSPRQVECIALVAQG 201

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           K+  EI  ILG+SR+TV+ Y+ S  R+   + R+  +  AVR+ 
Sbjct: 202 KSDWEIGQILGLSRDTVHEYVESARRRYGVRRRTQLVLRAVRDG 245


>gi|303241329|ref|ZP_07327834.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591168|gb|EFL60911.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 216

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 84/239 (35%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  + E     +  L         +                    G   F L    
Sbjct: 2   INIIIADDQEILRESLKSLIMLEPDFKVVSVAQN---------------GLEAFELCSKY 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D I+ S    + ++ +       + ++      +    F              
Sbjct: 47  MPDVVLMDVIMPSHNGLEGIKLIKEK----FDSI----KVMMLTSFEDQKYISKSLEYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   +++ +  ++    +I ++ L  +        +    ++    ++   T
Sbjct: 99  DGYILKDINPEMLKLAIKCVYSGIPVIHKNALAILTKNVGTTDSNDCKHESVK-QNITFT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+E +  I++GK++ +IA  + +S+  + N I  I  KT    R+    YA++N+IV
Sbjct: 158 SKELEIIDLIAKGKSNTDIAKEVFLSKGRIANIITRIFEKTRLNDRTELAVYAIKNHIV 216


>gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 222

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       ++    R+  +A +            +  +               
Sbjct: 5   IRVVLVDDHPIVRRGLTASLERAGDVAVVGEAASVSEARAVIDRVA-------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  ++      L+  +++               L    +       +      
Sbjct: 51  -PDVVLCDLRLADGDGVRLIAWLSVRGT---------GAPLVVTAYEDPYLVRSAVEAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +  +   G                             G D  L+
Sbjct: 101 RGYVLKDATEAVLHDAVRRVARGGI----------------AFVGVGDVAGVLGSDVVLS 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G+T+ EIA  L IS  TV  ++A +  K     R+ A+  A+   ++
Sbjct: 145 DRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAVLRAMELGLI 203


>gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea
           thermophila UNI-1]
          Length = 455

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E L  ++ G ++ EIA  L IS NTV  ++ +I  K    +R+ A  YA+R
Sbjct: 6   NEPLSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEATLYAIR 65

Query: 243 NNI 245
           N I
Sbjct: 66  NGI 68


>gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 78/246 (31%), Gaps = 32/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN    ++ + L  +     + +  L  R ++   +   +   +    + A         
Sbjct: 1   MNATTPRLRVALADDQALVRAGLRALLERLEVTVAL-EAEDGQALLDALQAQ-------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +       ++R +                 L    F      +
Sbjct: 52  -------PVDVVLSDVRMPGMDGIAMLRGLRARG--------DATPVLLLTTFDEADLLL 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +        ++   ++ +     ++         + A Y+ +  ++    +
Sbjct: 97  DAREAGAQGFLLKDAAPGQLHQAILRVAAGETLLAPVSTD--PVRARYRFHDDRAPGEGF 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                   REV  L  ++ G ++ EIA  L ++  TV NY+++I+ K  T+ R+ A+  A
Sbjct: 155 N------PREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKA 208

Query: 241 VRNNIV 246
           +   I+
Sbjct: 209 ITLRII 214


>gi|313792636|gb|EFS40722.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803170|gb|EFS44366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313829121|gb|EFS66835.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313839557|gb|EFS77271.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314963942|gb|EFT08042.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|315079093|gb|EFT51100.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315081562|gb|EFT53538.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315109751|gb|EFT81727.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327334500|gb|EGE76211.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1]
 gi|327457479|gb|EGF04134.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 202

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 62/228 (27%), Gaps = 29/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R      +   ++    ++ ++       R+       G                 D  +
Sbjct: 4   RILLAEDIKLVAEAFEALLSVEPEFEVVARVAR-----GDDLVTSATRLFPDVILADIDM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  R +            +       P    L   +       + Y   +    
Sbjct: 59  PGMTGIEATRMLRDKGYRG-----RIILLTALPGSGHLHAAMA---AGADGYLLKSITAP 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      I  +                            L  RE E L  ++
Sbjct: 111 SLINAIRAVCNGQSAIDPNVAAV----------------AMRKGPSPLNDRETEILRLVA 154

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ +IA  L +S+ TV NY+++ M K    +R+ A+  A     +
Sbjct: 155 DGSSTAQIASRLYLSKGTVRNYLSTAMSKLDADSRTAAVTRAREEGWL 202


>gi|192289348|ref|YP_001989953.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283097|gb|ACE99477.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 225

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSI 77
           T   +HL    D       L   V+  +    + E         +L R        LD  
Sbjct: 3   TPASTHLIIADDHPLFRDALRLAVAGVVSSAKIGEVGSFEDLTAMLEREGDVDLVLLDLK 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F  +     ++      V+   ++    +  +L           + +    F V
Sbjct: 63  MPGISGFSGL-IYLRAQYPAIPVVVVSASDDVETIRRSLDF-------GASGFVPKRFGV 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   ++ +      +  D            A           +   LT ++V  L  +
Sbjct: 115 EKLGEAILRVLDGDVWVPPDV--------DLSAAADPETSKLRDRLVTLTPQQVRVLMML 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 167 SEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 225

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I L   +      +  +      +  +  +         +  L               
Sbjct: 3   TTIALCDPNLLIRGGLRAILAGEPDIEVVAEVADGEQALRTVRRL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                     +     F++ R +A           +    +F          +       
Sbjct: 48  RPDLLFTALDLPGGHGFEVARALA------RAPETRSTGVVFLAQSFDPALAVQGLMAGG 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S      R+      +     ++    L +   L     +   +          LT
Sbjct: 102 RAFVSTGDPPRRLVTAARAVAAGYAVLPPAVLADGPWLTG---SGGAARPGAAPGVPGLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE+E L  ++ G ++ EIA  L +   TV ++++ ++ K   + RS AIA A R  +V
Sbjct: 159 GRELEVLRLMAAGMSNAEIAGHLSLGEATVKSHVSRLLGKLGLRNRSQAIACAYRTGLV 217


>gi|42560414|gb|AAS20374.1| HrpY [Pectobacterium atrosepticum]
          Length = 213

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 66/240 (27%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ +++  +       +  +    D L+ +           ++ ++              
Sbjct: 4   QIRLMIADDHVIMREGLKQIFALDDSLSVVAEAGNGAQVLAQLRSVA------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       L+  +             R   L   ++             
Sbjct: 51  --PDLLLLDMSMPGISGEALISRVVAQ--------YPRLPILVLSMYSEAQIAQHALKSG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +   D   +   +  +    R I      ++        + +            L
Sbjct: 101 ARGYITKDKDPEALLAAIRRVAQGARYIDHTIAGQL------VFSHYTEGGRAEHD--VL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + +   ++G   + IA  L IS  TV+ + A +M K    T    + Y     ++
Sbjct: 153 TAREHQIMIMFAQGMGINTIANELAISNKTVSTHKARLMEKMQFSTNVEIVKYVFSKKLI 212


>gi|83721051|ref|YP_441647.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167580458|ref|ZP_02373332.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|257139656|ref|ZP_05587918.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83654876|gb|ABC38939.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 279

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 70/242 (28%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +  G     +      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQGFDLIAV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCQACAPTPVAALTDDASPEHAQALFNAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
               +     I   L ++   G  +    L     +A  +     +      +       
Sbjct: 98  VIPRSTRPHLIVRALEMVLLGGHYVPPSALNLTEPIARARDGRVDAIVSQLPRRKRSPCS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 258

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 64/245 (26%), Gaps = 34/245 (13%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +   +   +   R++      G    +     +              +  + P D+    
Sbjct: 12  LQARETLNACLDRVFRDVCAQGFQSLVYDYAPVPLSMEGALITPSVFLQRNAPDDMHNVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG----------------------MDN 128
                 +   V QR T    P   +                                M  
Sbjct: 72  CEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGDQHRQVTRYLCDSDMGT 131

Query: 129 RYCSLTFDVAR----IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                              +     +   +   +L    LLA       +       +  
Sbjct: 132 GVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQERRC 191

Query: 185 E---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE ECL + ++G T+  IA  L  S  TVN ++ S  RK   + R  A+   +
Sbjct: 192 HHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGM 251

Query: 242 RNNIV 246
              ++
Sbjct: 252 HYRLL 256


>gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 225

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 22/226 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P   + +   +                    A               +D  +  
Sbjct: 21  MVVDDHPLVRESMVSRLTAMGAREVIEAASCAEARARARSV-----GPCDVCIVDVGLPD 75

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               DL+  +  +              +                     Y   +     +
Sbjct: 76  GSGLDLIAELRAAGWP---------RLVVLSAADDPYSVRAAFVAGAQGYLLKSASPVVV 126

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+  +   G          +              +       +L+ RE+E L  +++G
Sbjct: 127 TDGVRRVLDGGVYADPAVASLLA--------AGLRNNASNEGIGDLSSREIEVLRLVADG 178

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++ EI   LG+S  TV +++A I RK  T  R+  +A A+R  I+
Sbjct: 179 RSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAGII 224


>gi|297159287|gb|ADI08999.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 6/189 (3%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           VG +  +     + +E   D  +      D     A +                     +
Sbjct: 36  VGWADSVAEVVPMAKELGPDVALVDFRLPDGTGADAAAAIRANDPSTAIV---ILSADAS 92

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
               +         Y   +     I   +        +I    L E+  LA +     +S
Sbjct: 93  DSALLAAVEAGACGYLLKSASGDEIADAIRSAAEGETLIPASTLVEV--LARH-RETARS 149

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +   LT RE E LT +S+G  +  +A  L IS  TV  ++  I+ K   +++  
Sbjct: 150 SAQQTERLESLTPREQEILTLMSQGLDNRAVAERLSISYATVRTHVRKILEKLEVRSQLE 209

Query: 236 AIAYAVRNN 244
           A+A A    
Sbjct: 210 AVAKAADWG 218


>gi|258650739|ref|YP_003199895.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553964|gb|ACV76906.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 215

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 32/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    +++ +V+  +       VS   T S L+  +   +                G   
Sbjct: 1   MLTSERRIEVVVIDDHPFFRDGVSRGLTNSGLITVVAEAEN---------------GRDG 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
              +     Q   +D  +       + + +   +        +            +   +
Sbjct: 46  LAAIAEHRPQVAVVDYQLPDLDGIAITQAVVRDQLPT-----KVLLLSAITDSAVVFRAL 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y S     A I   ++ +     ++  +       LA   A   +      
Sbjct: 101 EV---GASGYLSKDARRAEIVDAVLTVSRGKTVVPPE-------LAGSLAQEIRLRAQPT 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE++ L   + G++  ++A  L I  +TV  +   +  K     R+ A+A A
Sbjct: 151 GP--VLSERELQVLRGFARGQSIPQLAKELYIGASTVKTHTQRLYEKLGVSDRAAAVAEA 208

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 209 MRRGLL 214


>gi|163754837|ref|ZP_02161958.1| two-component response regulator [Kordia algicida OT-1]
 gi|161324904|gb|EDP96232.1| two-component response regulator [Kordia algicida OT-1]
          Length = 225

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 74/224 (33%), Gaps = 18/224 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD--------SIVSSDW 82
           D + ++  +D    +T  +       G  H  +V      +  L          ++    
Sbjct: 2   DEIIKIAIVDDDTLFTELLSQFIN--GQEHMEIVYTATNGDTFLKDYKTLTATILLLDLR 59

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D      L E  K    ++    +    F+             N +     +   +  
Sbjct: 60  MDDGSGLDVLKELKKEAAAIK---TIVLSTFYRRSFLGQMMKLEANAFIPKDIEPEELVT 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +  K        L E   +   Q +          KD  LT RE + L  + +  T
Sbjct: 117 VIETVHKKEHYF----LKEQLEIMRLQLSKKVPEFTVESKDA-LTSRETDILKLLCQQFT 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI   L IS  TV  +  +++ KT  K  +G + YA++N IV
Sbjct: 172 TKEIGEQLFISPKTVETHKTNLLLKTGVKNTAGLVIYAIQNKIV 215


>gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 471

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+ RE E L  ++ G T+ +IA  L IS NTV  ++ +I  K    +R+ A  YA
Sbjct: 4   DTLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYA 63

Query: 241 VRNNIV 246
           VRN ++
Sbjct: 64  VRNGLL 69


>gi|37223253|gb|AAQ90229.1| LuxR [Aliivibrio fischeri]
          Length = 218

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 17/199 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRNTV 217
           EGK+S +I+ ILG S   V
Sbjct: 198 EGKSSWDISKILGCSEXXV 216


>gi|39933929|ref|NP_946205.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39647776|emb|CAE26296.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 225

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSI 77
           T   +HL    D       L   V+  +    + E         +L R        LD  
Sbjct: 3   TPASTHLIIADDHPLFRDALRLAVASVVSSAKIGEVGSFEDLTAMLEREGDVDLVLLDLK 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F  +     ++      V+   ++    +  +L           + +    F V
Sbjct: 63  MPGISGFSGL-IYLRAQYPAIPVVVVSASDDVETIRRSLDF-------GASGFVPKRFGV 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   ++ +      +  D            A           +   LT ++V  L  +
Sbjct: 115 EKLGEAILRVLDGDVWVPPDV--------DLSAAADPETSKLRDRLVTLTPQQVRVLMML 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 167 SEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 212

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 74/226 (32%), Gaps = 28/226 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHF------------LLVRWDLFQEQKLDSIVSS 80
           L R+  ++    +   +       G  H              +      Q   LD+ +  
Sbjct: 3   LPRVWIVEDNAVYRGAVARALTATGELHCEEQFGTGRALMQAIQERLPPQIVLLDAGLPD 62

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               DL+  M     D           L   VF    +           Y      +  I
Sbjct: 63  GSGIDLLPAMRDRAPD--------CRVLMLTVFEDAAKITQAICNGAQGYLLKNSSIEEI 114

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G+      G  +          +A     +F  +      D+ L+ RE E L  + +G
Sbjct: 115 ISGIQQSLKGGVPMTPC-------IAHQVLELFSRFAPRH-ADYGLSTRERETLELMVQG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               EIA  L +S +TV+ Y+  + RK    TR+GA+A A++  +V
Sbjct: 167 FIRKEIADRLNLSLHTVDTYLRGVYRKLEVNTRTGAVAKALKEGLV 212


>gi|171911323|ref|ZP_02926793.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 76/236 (32%), Gaps = 20/236 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V    T  + L R +     ++   R  A+ + V A    +   D      LD  +   
Sbjct: 16  LVEDHKTYGERLMRALNRLDGITCGQRFTAVEDAV-ARLQAVGGSDPPAVLLLDVELPGM 74

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +     +           +   VF    +           Y   T  V  I 
Sbjct: 75  SGIEGIASLKAHAPN--------LAIVILTVFEDDDKIFRAICAGAAGYLLKTAGVEDIA 126

Query: 142 IGLMLLFPKGRIILRDRLWEIGLL-----AAYQANMFKSYDV--HWGK----DFELTGRE 190
             +      G  I       +  +     A    +   +        +     + LT RE
Sbjct: 127 GAIRTAASGGSPINPAIARRVLEMFSKVNAGRAGDQGNTVGSEGAVNRGGQVSYGLTPRE 186

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ L  + +G T  + A  +GI   T + YI S+  K   ++R GAIA AV+  +V
Sbjct: 187 LQILELLVQGHTIKQAAGEMGIGYYTADEYIRSVYEKLQVRSRGGAIAKAVKERLV 242


>gi|94967299|ref|YP_589347.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549349|gb|ABF39273.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 217

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 29/234 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +  L      +  M            +  +               
Sbjct: 5   IRVVIADDHAVLRESLVALLNSQPDIEVMGSASNGTEALEIVQKV--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +   FD++R +  +          R   +      +  + +       
Sbjct: 50  HPDVLVLDLAMPAGDGFDVLRTLDRAGT--------RVASVVLTGSESQQDYVQVVRLGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                   D +++   +  +         +    +         M             L+
Sbjct: 102 RGLVLKGDDPSKLFAAIRAVADGELAFSDEVARGV------LNAMAAEPQPAPTNLARLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            RE +    ++ G  + +IA  L IS NTV  ++ SI  KT  + R      A+
Sbjct: 156 ERERQISFLVARGYKNKDIANELTISENTVKRHLQSIFSKTGARDRLELAVLAL 209


>gi|90415949|ref|ZP_01223882.1| regulatory protein, LuxR:Response regulator receiver [marine gamma
           proteobacterium HTCC2207]
 gi|90332323|gb|EAS47520.1| regulatory protein, LuxR:Response regulator receiver [marine gamma
           proteobacterium HTCC2207]
          Length = 214

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 27/238 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +I+L  +     + +  +         +   +  +    ++    +  G           
Sbjct: 3   SILLVDDHAVVRNGLKQMLIEHLGSVVLGEANDAIEAMQQVRK--QDWG----------- 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D+++ +   +       L        P        +        
Sbjct: 50  --LVVLDIRLPGRSGVDVLKQIKSEK-----PHLPVLILSSYP---ESQYAVRLIQAGAA 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y S   +   I   +      GR I        GLLA   +  F + D     +  L+ 
Sbjct: 100 GYISKDSEETEIIKAVKTAAAGGRYINEIV---GGLLANTMSRSFSNADDLSLYES-LSD 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE +    ++ GK + +IA  L +S  TV  + + +M+K    T +  I YA ++ ++
Sbjct: 156 REYQIFLELASGKRAKDIAEKLQVSAKTVATHRSRLMQKMGFSTNAELILYANKSGLL 213


>gi|149927326|ref|ZP_01915582.1| putative DNA-binding response regulator [Limnobacter sp. MED105]
 gi|149824040|gb|EDM83263.1| putative DNA-binding response regulator [Limnobacter sp. MED105]
          Length = 211

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 25/228 (10%)

Query: 22  FVSHLPTRSDLLARMIP---LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            V  LP    LLA        + T+     + A  +              F    +D ++
Sbjct: 6   IVDDLPQARSLLANAAEKAFPETTIELADSLRAGQQA--------AANCQFDLALIDLLL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L+  M+ ++ +                   L             Y        
Sbjct: 58  QDGHGTELISEMSHTQPNCT-----LVVASVMGDDDNLF---KALQAGAQGYLLKDQSQD 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           ++   L  +      +      ++            +          L+ RE+E L +++
Sbjct: 110 QLIFQLSGIANGSLPLSPSIARKLMQY------FQPNQGEQSASTAVLSVREIEVLGFLA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G    +IA  L IS +TV +++ +I RK    +R+ A   A    ++
Sbjct: 164 KGIRLVDIAKQLEISHHTVGDHVKNIYRKLNINSRAEAAIKAQGFGLL 211


>gi|256782982|ref|ZP_05521413.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 226

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + V  +   +  +  +                    G     LVR  
Sbjct: 2   IRVLIADDEPMIRAGVRAVLATAADIDVVAEAAD---------------GHGAVELVRRH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D    +           +     +    F      +    G  
Sbjct: 47  RPAVAVLDIRMPGLNGIDAAAEIRT--------AVPGTGVIMLTTFGEDDYILQALGGGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFE 185
             +   + +   +  G+  +      +       +   L A     +         +   
Sbjct: 99  AGFLIKSGEPEELLTGVRAVAGGAAYLSPRVAARVVAHLAATGAGTLAGRRSAARDRVAA 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +  G ++ +IA  L +   TV  +++S++ +     R+ A   A    I
Sbjct: 159 LTARERDVLALLGAGLSNGQIARRLHVVEGTVKAHVSSLLSRLGVDNRAAAAVVAHEAGI 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|256421177|ref|YP_003121830.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036085|gb|ACU59629.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 211

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 63/233 (27%), Gaps = 23/233 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +     + V       + L +++     +S            G +    ++        
Sbjct: 2   SDKSASLAIVDDHLIVLEGLQQLLLNAANISVAGSFTT-----GTAFLSFLKKHTIDIVL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      +L   +                 L           +       + Y   
Sbjct: 57  LDISLPDINGIELCLEIKKFSPHTI--------VLALSNHSERSMVLQMLQQGASGYLLK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +           +     +           +           LT RE E 
Sbjct: 109 NISGEELIACIHEALDGQITFSQAVKEIMS----------RPSVTELKGVPRLTKREKEI 158

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I+EG+T+ +IA  L +S  TV  +  S+++K   K  +  I  AV   ++
Sbjct: 159 LQLIAEGQTTPDIAATLHLSPLTVETHRKSLLQKFEVKNVALLIRTAVEQKLL 211


>gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 199

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L           A     G     L++        LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVFQA---KNGQEAIQLLKKASVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y     ++
Sbjct: 56  MPVKTGLEVLEWIRAEKLETRVVVV--------TTFKRPGYFERAVKAGVDAYVLKERNI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V       LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|171914454|ref|ZP_02929924.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 234

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 19  RTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLV----------RW 66
            T  +     R SD   R+  ++        M    E + G     L             
Sbjct: 1   MTIQIPEPTRRKSDPTCRVGIVEDHTFMQEGMKVFVESLPGFECAWLAGTAAEAVEKIAQ 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D      +D  +      +L++ +  +    +  V+         +              
Sbjct: 61  DEPNVLIVDITLPDRSGLELIKDLHATHNQMHVLVV--------SMHEEDLYAERALKAG 112

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y             L  +   G  +   ++ +  L+A       +           L
Sbjct: 113 AKGYIMKNAPHDVFESALTRVSQGGVAVSH-KMTDRVLMAFSSGVQPRPDSGLHN----L 167

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + RE E    + EGK++ ++A  + IS  TV+ +  +I  K   +  +    YA+R
Sbjct: 168 SDREFEVFQHLGEGKSTHQVAESMRISPKTVDVHRMNIKNKLNLEDGAAVTRYAIR 223


>gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
 gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula
           bermudensis HTCC2503]
          Length = 217

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 58/213 (27%), Gaps = 12/213 (5%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            R++ +D        +       G     +        +   +        D +R     
Sbjct: 7   PRLVIIDDHELAREGLRLALVQRGFEVVAVGATAAEAIELTQTTDPDVVLLD-IRLRDGP 65

Query: 94  EKDKYYNVLQRPTEL----FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +       ++   +        +                 Y      +  +   L  +  
Sbjct: 66  DGLAAAAGIKALNQSVAVVMLSLHDDADYVRAALKAGAKGYILKDTALDELCAELKTVLS 125

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  I +  L               +    +     LT RE E L  ISEGKT+  IA  
Sbjct: 126 GGVAIPQALLAA-------VLTPKAAAPPEYHLVERLTDREREVLRLISEGKTNKAIARE 178

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L IS  TV  ++   + K     R+ A    VR
Sbjct: 179 LVISPATVKAHVERCLAKLGAADRTQAAVMMVR 211


>gi|297622974|ref|YP_003704408.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164154|gb|ADI13865.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 386

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 78/237 (32%), Gaps = 20/237 (8%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R  E R S   H      ++ R+        +     +     G     +V   L +   
Sbjct: 164 RRSEARFSKAFHASPAPTVIIRLA----DERFLDVNASFLSATGYERDEVVGRTLAEVGL 219

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D     D+  DL+   +     +     +    L     + L   I     M      +
Sbjct: 220 YDDAPGRDYAADLLHRGSPVPLHETEVRTKAGGRLSVMAANEL---IELEGEMCRLDIFI 276

Query: 134 TFDV-----ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                      +   +  +        R  + ++           +S  V       LT 
Sbjct: 277 DISARKRSEEELMEAIQEVMSDTAWFSRQVMEKLA--------QLRSGSVALSGTEALTP 328

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  I++G ++  I+  LG++  TV NY+ASI +K   ++R+ A+ +A    +
Sbjct: 329 REQQVLGRIAKGLSNSAISQELGLAPQTVRNYVASIYQKLGVRSRAEAVVWARERGL 385


>gi|304390764|ref|ZP_07372716.1| transcriptional regulatory protein DegU [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325647|gb|EFL92893.1| transcriptional regulatory protein DegU [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 224

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 11/215 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +I +D        +  + E        G         DL Q    D ++       +   
Sbjct: 11  VILIDDDHEILEDLRLVIEADPEISVAGIGFDGSYVLDLVQTHHPDVVLMDVEMPKVDGI 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            A  +    Y        +    F              + + +     A +   +  +  
Sbjct: 71  AATRQLKSRYP---NLGVIMLTNFRHDTWLKEALDAGADGFLTKDTPRADLSAAIKRVAH 127

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            GR +    L  +  +A Y+   F         +  LT  E +       GK++ +IA +
Sbjct: 128 GGRFMSTKPLNML--IANYEDPNFTPDPRFRAGEKALTATERQVWQEALRGKSNAQIAKV 185

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +    +T+  ++++IM+K + ++R+  + ++ +N 
Sbjct: 186 MQSKESTIKTHMSAIMQKFSVRSRAELLVFSAKNG 220


>gi|302336921|ref|YP_003802127.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634106|gb|ADK79533.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 225

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 61/233 (26%), Gaps = 16/233 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDC-TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           D  +           + L+ ++ L                  G     L          +
Sbjct: 3   DRIKLVLADDQTLFRESLSNILKLKAKEFDVVGLAQN-----GEEAVALAASTAPDIILM 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +  + +     D           +    F      +         Y   T
Sbjct: 58  DVRMPILDGVEATKIIHERFSDI--------KIMMLTTFDDDEYILHAIQNGAIGYIIKT 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE-- 192
                +   +M L      +      ++     ++       +      + L+ R  E  
Sbjct: 110 IPPNELITSIMALKNGIFQMSPSIAGKLARQKVWEQTKTNMLNKEPLPSWFLSLRAKERA 169

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  I +G T+ EI   L ++  TV NY + I        R  AI  A+  NI
Sbjct: 170 LLLLICQGYTNKEIGNRLYLAEQTVKNYTSRIYEAMEVDNRHAAIKKALDANI 222


>gi|226363539|ref|YP_002781321.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226242028|dbj|BAH52376.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 20/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V   P     +A ++     +    +  ++ E +       V         +D  
Sbjct: 13  IRVAVVDDHPVFRLGMAALLSTLDGMEVAAQASSVAEAL------DVVDGDVDVVLMDLE 66

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D  R +                 L   +       +         Y     D 
Sbjct: 67  LGDGSGVDATRRLLERH--------PALRVLVVTMHEDDESLVASVRAGARGYLVKGADP 118

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     I+           A       +  +       ELT RE E L  +
Sbjct: 119 GEVERAVRAVANGEMILGAAVAAR----AMSFMAASRRMEPAVFP--ELTDREREVLDLV 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G  +  I+  L +S  TV N++++++ K     R  AI  A    +
Sbjct: 173 ARGYDNASISRRLVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 220


>gi|197658985|emb|CAR47858.1| putative DNA binding response regulator [Rhodococcus sp. PY11]
          Length = 222

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 72/240 (30%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I++  +       ++ +  +      +  +         ++ LT             
Sbjct: 13  PLRILIADDHPLYREGITSVLQQYPEFDVVAAVGSGREAVEEIHRLT------------- 59

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +       +V  +  S+             +                  
Sbjct: 60  --PDLAIVDLQLPDIDGVAVVDEIERSDSP--------TRTVIVSALDDSATIYRALEHG 109

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +       +R  L+ +     +I         +L        ++     G+   L
Sbjct: 110 AQAYLTKVASGQVVRDTLVDVAAGQTVIPP-------VLQTGLVKEIRARQEVSGR-VLL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L   + G T+ +IA  L +S  TV  ++ +   K     R+ A+A A+R  ++
Sbjct: 162 TPRELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKLDASDRTAAVAQALRLGLL 221


>gi|332304648|ref|YP_004432499.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332171977|gb|AEE21231.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 212

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--------LDSIVSSDWPF 84
           +A+ +  D    +   +    E +      +++ D              +D I+      
Sbjct: 1   MAKFLIADDHPLFREALVGALEPL-FEEVEILQSDSLDSTLNSLDANPDIDLILLDLHMP 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                  L    + Y  +            ++       +     +   +     I   L
Sbjct: 60  GCENFYGLIRVTQDYPEIPVAVVS---ASDSIEVVSYVMSFGAKGFIPKSSPTPTIAEAL 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +  +   +I  + + + N+ +          ELT ++ + L  I +G  + 
Sbjct: 117 RSIMNGEVWLTDELKVQIAEIDSDEINLAQRI-------AELTPKQFQVLKLIHDGLLNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L ++  TV  +I+++ RK    TR+ A+    + N+
Sbjct: 170 QIAHELNVTEATVKAHISAVFRKLEVNTRTQAVLLLKKLNL 210


>gi|227114479|ref|ZP_03828135.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 59/196 (30%), Gaps = 24/196 (12%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
           + I+ S +P + V     ++      V+        P        I     +        
Sbjct: 43  EMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFDLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQAN------ 171
                N Y  +  D       L ++         D   E       +L            
Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDIDTFIEEKKDTFQMLLIDAYEKIISLC 162

Query: 172 -MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                           + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 163 REMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|196231768|ref|ZP_03130625.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224240|gb|EDY18753.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 216

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 73/242 (30%), Gaps = 28/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + I+L  +     + V  +  +                           G       
Sbjct: 1   MRPIRILLVDDHAVVRNGVRFVIEKQPGWEICGEAQT---------------GREGVTAA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           +         D  +      +++R +           L     +                
Sbjct: 46  KELKPDVVIQDITLPELSGMEVLRQVKK--------ALPDTEVIMFTAHEMEDLVHQVFD 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   T D + +   +                   ++     +   S         
Sbjct: 98  AGGRSYLLKTDDPSHLIEAIRAAAEHKAYFTP---RVSQIILRRLQSG--SMGERPAPGN 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E + +I+EG+T+ E+A +LG+S  T  ++ A++M+K   KT    I YA+RN 
Sbjct: 153 SLTSREREAVKFIAEGRTNKELADVLGVSLRTAESHRAAVMQKLGLKTIGELIRYALRNG 212

Query: 245 IV 246
           I+
Sbjct: 213 II 214


>gi|229069389|ref|ZP_04202679.1| Response regulator [Bacillus cereus F65185]
 gi|228713876|gb|EEL65761.1| Response regulator [Bacillus cereus F65185]
          Length = 212

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFDVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVILDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|229079021|ref|ZP_04211573.1| Response regulator [Bacillus cereus Rock4-2]
 gi|228704435|gb|EEL56869.1| Response regulator [Bacillus cereus Rock4-2]
          Length = 212

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVILDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|289208492|ref|YP_003460558.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944123|gb|ADC71822.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp.
           K90mix]
          Length = 204

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
              E    +  L   +     +  ++        D    +          V +   +   
Sbjct: 15  RWVEAFPDAQVLRPPFPSTLPEGTEACWIGTDLADWEEYVKQRTL-----VHRVIVQSRH 69

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           P      E I       + YC    +VA++R     +   G  +  D +    ++   ++
Sbjct: 70  P---NDEEGIRAFDAGAHGYCHTLANVAQLRTIAATVTGGGLWVGPDLMTR--MIRTVRS 124

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
              +  +        LT RE E    ++ G  + EIA  LG++  TV  ++ S+ +K   
Sbjct: 125 AQPRDPETPPEGFENLTPREREVALAVTTGAHNKEIARQLGMTERTVKMHLGSVFKKLNV 184

Query: 231 KTRSGAIAYAVRN 243
             R   + +  R 
Sbjct: 185 DDRVQLVLHLTRL 197


>gi|184201310|ref|YP_001855517.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581540|dbj|BAG30011.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 270

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 78/288 (27%), Gaps = 73/288 (25%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +        S + T  + +  +                    G     L    
Sbjct: 3   LRVLLVDDQPLIRVGFSAILTSQEDIEVVGQAGD---------------GHEALDLAAAL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  +          R   L    F T        +   
Sbjct: 48  DPDVVCMDVQMPRLDGIEATRRLLAAGS--------RAAVLVLTTFDTDEALFAALSAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL---------------------- 165
           + +   +     +   + +L     ++       +                         
Sbjct: 100 SGFLLKSAGPEELIQAVRVLGRGDALLDPLVTRRVLARTTGPSAPTGDTTQPSPDSPADD 159

Query: 166 ---------------------AAYQANMFKSYDVHWGKD-------FELTGREVECLTWI 197
                                A    +   +     G +         LT RE E LT +
Sbjct: 160 AAAPAPDAPARERGAASSAPGAPGAEDETATSPDAHGTENGAAASPAGLTARETEVLTAM 219

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G +++EIA  L + R TV  +++++++KT  + R  A+ +A  + +
Sbjct: 220 ARGLSNEEIARELVVGRATVKTHVSNVLQKTGARDRVHAVIWAFEHGL 267


>gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 204

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 66/218 (30%), Gaps = 27/218 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           R++ +D       +   L    G              L R +       D  +       
Sbjct: 3   RILVIDDEAKLRRQFAELLNLEGFAVSEARNGREGVELARRERPDLVMCDITMPEMNGHR 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +                 +F   +    +  T      + Y     + A +   + 
Sbjct: 63  VLEALRAE------PATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPVEPADLIAAVQ 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               + +     R                       +   LT RE E L W+++GKT+ E
Sbjct: 117 ARLRRAQAANPAR------------PAKGEAAPAQLEPLGLTPREAEILFWVAQGKTNPE 164

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA ILGI   TV  ++ ++  K   + R+ A A A+  
Sbjct: 165 IATILGIGLTTVKKHLEAVFVKLGVENRTSAAALALEQ 202


>gi|39995364|ref|NP_951315.1| LuxR family DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982126|gb|AAR33588.1| DNA-binding response regulator, LuxR family [Geobacter
           sulfurreducens PCA]
          Length = 215

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 63/224 (28%), Gaps = 15/224 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSS 80
            V  +    D       L   +     +  + +   G     +          +D  +  
Sbjct: 1   MVIKVLIADDHAVVRDGLTMILESQSDIAVIGQAGDGREAIAMAESLKPNVVVMDITMPE 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +A  +             +   +  TL             Y       A +
Sbjct: 61  LNGIEAARLIAREQ--------PATKIVILSMHDTLEHVYRALQAGARGYLLKESAGAEV 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R   R       +      +     D+       L+ RE E L  + EG
Sbjct: 113 TDAVRTVMRGHRYFGRGSRLPSDM------HRSACADLPKSPLDSLSQREREVLQLVVEG 166

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           K S EIA IL +S  ++  Y + +M K         + +A+ + 
Sbjct: 167 KKSSEIAEILSLSPKSIETYRSRLMIKLGITNIPSLVKFALLHG 210


>gi|26987151|ref|NP_742576.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida KT2440]
 gi|24981784|gb|AAN66040.1|AE016233_6 DNA-binding response regulator UhpA [Pseudomonas putida KT2440]
 gi|313496776|gb|ADR58142.1| UhpA [Pseudomonas putida BIRD-1]
          Length = 209

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  +               +                  
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDMQVAGEAGNGEQLLETLR---------------HT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +           +     L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIPRIRAL---HDAPAI-----LMLSMHDEAQMAARALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I       +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAGGGRYIDPSLADRMVFEVGLTESRPLH--------TLLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLKVNSLAELVKYAMEHKLI 209


>gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 226

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 67/224 (29%), Gaps = 16/224 (7%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
             +        ++     +G   F  +              S  +P   +      +   
Sbjct: 2   QCETETDLVDLLWKHFGGLGFQGFAYM-VPSRDSPLTMVYKSRGYPEKFIETYQREKLYL 60

Query: 98  YYNVLQRPTELFCPVFHTLPE-------------NITPPAGMDNRYCSLTFDVA-RIRIG 143
                   T     +  +                +     G+ +     TF +  RI   
Sbjct: 61  IDPFPAHVTRHKSTLRISEIAQQAKLSRAETDYIDRMKKMGITDGLIIPTFGMDLRIVKF 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEGKT 202
           ++       +I  D L+E                         L  REVE L WI++GKT
Sbjct: 121 VLGQVTDFSVIENDNLFEFTATLQMAHRRLDELARQDEPIRRRLPRREVEILHWIAKGKT 180

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA ILG++  TV  +IA + +K     R+       R  I+
Sbjct: 181 NAEIAAILGVAAPTVATHIARMFQKLDVNDRAALAVKGFRYGII 224


>gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 207

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 37/236 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q+  I +  +       ++     + + A ++           +               
Sbjct: 1   MQKKKIAIADDHILVREVIAMYL-AAQMEAEVMQAGSIQELEDLLEK------------- 46

Query: 65  RWDLFQEQKLDSIVSSD-WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               F    LD ++       + +  +    ++K   V+         V H         
Sbjct: 47  -EGSFDIILLDLVMPGMKPGLEALTRILELNQNK--PVMLISGNAPPGVIH------EAL 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   +     +   +  +      +                    S       +
Sbjct: 98  HRGAAGYVEKSQSARSLVNAINFVLAGEIYVPMSL-------------RLNSVRPSITDE 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L+ +E+E L  ++ G  + EIA  LGIS  TV  ++ SI  K   K R+ A   
Sbjct: 145 KGLSPKELEVLRCLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQAAMI 200


>gi|315103380|gb|EFT75356.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
          Length = 210

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +     + V+ L      +  +              A  +       L    D
Sbjct: 3   VRVLIADDHPVVRAGVTALLDTDPDIEIVATAATPSQALAAA-ATVDLDLVLLDLQFSSD 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D              + L+                     T  + +       
Sbjct: 62  ADAPSGVDVTRKIRSQPSAPEVLILTNY------------------DTDADILAAVEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +         +       + +                     LT
Sbjct: 104 TGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMV-------------RMRSPRTSLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L   ++G ++ +IA  L +S  TV   ++ I  K    +RS A+A A     +
Sbjct: 151 AREFDVLEASAQGLSNAQIAEFLVVSEATVKTDLSHIYTKLGVTSRSAAVAKARDIGFI 209


>gi|212638135|ref|YP_002314655.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559615|gb|ACJ32670.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  + +     +  L      +  +                    G     L 
Sbjct: 1   MERMKVLIVDDHDLIRKGIRLLLEGFSDVEVVGEASN---------------GCDAITLA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  + +      +     ++       L+    +   +            
Sbjct: 46  LKYHPDVILLDLSMPT-----GLDGFTTAKTIMD--ELEDVKIIVLTMHDEEIYVQKAIQ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   L  ++   R                     +          
Sbjct: 99  YNIHGYLLKNSQTNDLHEALQAVYHGKRFYRTHI----------PEERLEKMFAEKEPRS 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +     G T+++IA  L IS  TV N+  +IM+K   K +   I YA++N+
Sbjct: 149 PLTNREREIVRLTFLGYTNNQIANKLKISPKTVENHKTNIMQKLGIKEKHELIQYALKNH 208

Query: 245 I 245
           I
Sbjct: 209 I 209


>gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 222

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 71/216 (32%), Gaps = 12/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +     M  +    G S  L ++        LD+++     F+
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYM-VMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFE 71

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +          VL      F          +         Y         +   + 
Sbjct: 72  TCRQIKQQPDASNIPVL------FMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVA 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                 R +   R           A        H    F+LT REV+ L W++ GKT+ +
Sbjct: 126 SHLRTARTLQSARSTSQPPGINDAAAY-----THLSSSFQLTEREVDVLRWVACGKTNKD 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           IA IL +S  TVN ++  I  K   +TR+ A + A+
Sbjct: 181 IADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|254293153|ref|YP_003059176.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041684|gb|ACT58479.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC
           49814]
          Length = 248

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 18/231 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
                       +       L    G +            +        +WP    R  A
Sbjct: 13  FAREAKECTDVPALGRLFQDLVAPYGVTASSAWAVIGGDVKLSRG--FGEWPKVWARHYA 70

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVA 138
                +   V +   + F   +                        G  + Y  L   + 
Sbjct: 71  DQRYFEVDPVFESLLKGFDAGYWDELVSNLPVSQAGLKVMEDAAAHGYADGYSRLIPTLN 130

Query: 139 RIRIGLMLLFPK-GRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLT 195
                + L      R      L+++  +        +         KD +LT R++E L 
Sbjct: 131 GSYYLVSLYGKTLVRDPNVRILFDLASIKFVHEGVMLLNRRVGTPLKDHDLTKRQIEVLQ 190

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G+T  + A  LG+S   V  ++  I ++   +T S AI  A    ++
Sbjct: 191 AKANGQTDKQTADRLGVSVKAVEGHLTKIRKQMNARTTSQAIGLARGKGLI 241


>gi|284990646|ref|YP_003409200.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063891|gb|ADB74829.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 59/220 (26%), Gaps = 20/220 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    M  + T   GA     V         +D  +     
Sbjct: 3   DVLVVDDHALMRTGLSGLIAAAGDMRVVGTAADGAEAVEEVARLAPHVVLMDLSMPVLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 L    F      I         Y     + A +   
Sbjct: 63  VAATRRIVEEHPSVE--------VLVLTSFSDRQRVIEALDAGAGGYVLKDTEPADLLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +       +                   +  ELT RE E L  +  G  +
Sbjct: 115 IRSTARGHSPLDPRVARTV-----------LHARRSPVRAAELTEREQEVLALVGHGLAN 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  LGI  +TV  ++ S+ ++   + R+ A  +A  +
Sbjct: 164 KQIARRLGIRESTVKAHLTSVFQRIGVRDRTSATLWARTH 203


>gi|299531248|ref|ZP_07044658.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298720655|gb|EFI61602.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 212

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +      +  ++             ++                  
Sbjct: 2   IHVVLCDDHAILRRGIRDTLAEATDISVTAEAGSYAELREQLRDAA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  +        ++       P        +       
Sbjct: 48  -CDVLLLDINMPGRSGLEVLASVRETH-----PQIRVIMVSMYP---EDQYALRSIKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    + +  +      +LA   A               L+
Sbjct: 99  AGYANKAGDPVLLIDAVRTVHSGRKYLTAEVA---QMLADSLAQPAAPV-----PHETLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G+   +IA  L +S  TV+ Y A ++ K    + +   AYA++N ++
Sbjct: 151 EREMQTLLKIASGQRQTDIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGLI 209


>gi|316932396|ref|YP_004107378.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315600110|gb|ADU42645.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 225

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--HFLLVRWDLFQEQKLDSI 77
           T   +HL    D       L   V+  +    + E         +L R        LD  
Sbjct: 3   TPASTHLIIADDHPLFRDALRLAVASVVSAAKIDEVGSFEDLTAMLEREGDVDLVLLDLK 62

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F  +     ++      V+   ++    +  +L           + +    F V
Sbjct: 63  MPGISGFSGL-IYLRAQYPAIPVVVVSASDDVETIRRSLDF-------GASGFVPKRFGV 114

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   ++ +      +  D            A           +   LT ++V  L  +
Sbjct: 115 EKLGEAILRVLDGDVWVPPDV--------DLSAAADPETSKLRDRLVTLTPQQVRVLMML 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           SEG  + +IA  LG+S  T+  ++++I++K   ++R+ A+  A +
Sbjct: 167 SEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAK 211


>gi|260222417|emb|CBA31960.1| hypothetical protein Csp_D29730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 230

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +      S  +               + +                
Sbjct: 23  IQVVLCDDHAMIRRGIRDTLVDSGGIEVTGEAGSYQELKETLKSAA-------------- 68

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      +++  +  S              L   +F      I       
Sbjct: 69  -CEVLVLDLNLPGRSGLEVLAAVKESH--------PHVRTLIVSMFAEDQYAIRCLRAGA 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D A +   +  +    + +  +        +    N   +          L+
Sbjct: 120 SGYLNKAGDPADLAKAVRTIHSGRKYVTPEV-------SEMLVNQLATPSEETL-HSRLS 171

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K A    +    YA+RN +V
Sbjct: 172 ERELQTLIKIASGKKLSDIAEELMLSPKTVSVYRARLLEKLALSNNAELTVYAIRNALV 230


>gi|284032378|ref|YP_003382309.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811671|gb|ADB33510.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 215

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +        + E   G     L +        +D  +     
Sbjct: 4   RILLADDQAMVRAGFRLILEREPDFEIVGEAEDGKRAVELAQQLRPDVTLMDIRMPLMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +A         V      L    F                +         +   
Sbjct: 64  LAATRVLAGQG------VAHPLRVLIVTTFDLDELVHEALRSGARGFLLKDAGPRLLVEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++       +       A+   +          LT RE++ +  ++ G+T+
Sbjct: 118 VHAAANGESLVSPSITTRL------LAHFSTTSGHVRSPRPALTDRELDAVKAVARGRTN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI+  L IS +TV +++AS+ RK A + R+    +A    ++
Sbjct: 172 AEISAELMISLSTVKSHLASVQRKIAARNRTEIAVWAWEYGLM 214


>gi|331006164|ref|ZP_08329489.1| BarA-associated response regulator UvrY [gamma proteobacterium
           IMCC1989]
 gi|330420020|gb|EGG94361.1| BarA-associated response regulator UvrY [gamma proteobacterium
           IMCC1989]
          Length = 217

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 70/236 (29%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     +S +    D  + +   +                G     LVR  
Sbjct: 2   IKIIVIDDHDLVRMGLSRILDDVDGFSVVGNGNS---------------GEKALQLVRDL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + + L+  +           +                   
Sbjct: 47  QPDVVMMDVKMPGMGGVEATKRIKLANGN--------VKIIAVTSCDDDLYPSKLMRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      +  +   ++ L ++                  L+
Sbjct: 99  SAYLTKRAAPDELIEAVNKVVAGKTYMSSEIAQQLALKSS------IGTGGPDSPFSALS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE++       G+  +EIA IL +S  T+N++   I  K +       + +AV++
Sbjct: 153 DRELQVAMMTIRGQKPNEIAEILNVSAKTINSFRYRIFEKFSLNNDVELVLFAVKH 208


>gi|309812510|ref|ZP_07706262.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
 gi|308433529|gb|EFP57409.1| putative nitrate/nitrite response regulator protein NarL
           [Dermacoccus sp. Ellin185]
          Length = 198

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 31/228 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            +++L  +     + +  L   S  +  +            +  L E             
Sbjct: 2   TSVILTDDHPVVRAGLRALLDAS-GIDVLDEAAGGEEALRVLDRLAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q  + D ++        +  +A +           P  L    + T  + +       
Sbjct: 48  --QGVRPDVVLMDLQMGPGLDGVAATR--AIRARDDAPRVLILTTYDTDVDIVRGVEAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       A +   +        ++       +              +        LT
Sbjct: 104 SGYLLKDAPPADLVEAVHRASRGETVLAPAVAARL-------------VNRLSSPAPTLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            RE++ L  ++ G T+ EIA  L +S  TV  ++  I  K    +R+ 
Sbjct: 151 ARELDVLDAVAGGATNKEIAKHLFVSEATVKTHLVHINEKLGATSRTE 198


>gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 211

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 66/225 (29%), Gaps = 17/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D       L   V          E   G     L    +     +D  +   
Sbjct: 1   MKRILIADDHAVVRSGLRAIVETQSNWIVAGEATNGEQAVGLAVETMSDIVIVDYSMPLM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++ R +   +         R   L   +                 +   +     + 
Sbjct: 61  NGLEVSRRLKALDL--------RTEVLILTMHEDEELLSEAVLAGVRGFLFKSDAKKHLI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L           + ++              + H   D  LT RE   +  I+EG 
Sbjct: 113 SAIEALLDGRPYFTSALVEKLL--------HDYQLNKHGRSDMLLTSREQSVVQLIAEGH 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+  ++VIL +S  TV  + AS MRK    + +  + YA+R  +V
Sbjct: 165 TNRSMSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIRKKLV 209


>gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 194

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 66/223 (29%), Gaps = 32/223 (14%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D     + L            + E   G S     R        LD  +     
Sbjct: 2   RLVIADDHPLFRMGLK-YALIQQGFDVVAEAADGPSALDACRTYQPDAALLDVKMPGMTG 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   + L+          R   +    F          A     Y S   D   +   
Sbjct: 61  IEVCDRLRLTA--------PRVVSILITTFAEPAIVQAARAAGAKGYVSKETDPESLARQ 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L        +   +             +     DV       LT RE E L  ++ G ++
Sbjct: 113 LR-----EIVAHPEV------------DRLPQVDVPR-----LTPRESEVLPLLARGFSN 150

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S +TV +++A +  K     R+ A++ A    ++
Sbjct: 151 KEIARDLGVSPDTVKDHLARLYSKLNAGDRTEAVSRARSIGLL 193


>gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 173

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 13/173 (7%)

Query: 87  VRCMALSEKDKYYNVLQR--PTELFCPVFHTLP------ENITPPAGMDNR----YCSLT 134
           +             VL+     +   P    L        +     G+            
Sbjct: 1   MAQYQSENYFAIDPVLKPENFIQGHLPWTDELFTDAQQLWDGARDHGLRKGITQCLMMPN 60

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-SYDVHWGKDFELTGREVEC 193
             +  + +    L           L    L+      + +  ++     + + + RE E 
Sbjct: 61  HALGFLSVSCTSLQAHSISSEEVELRLQMLVQMALTTLLRFEHETVMPPEMKFSKREREI 120

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L W +EGKTS EIA+IL IS NTVN +  ++ +K     +     YA    ++
Sbjct: 121 LKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKIQIACYAAATGLI 173


>gi|220911420|ref|YP_002486729.1| LuxR family transcriptional regulator [Arthrobacter
           chlorophenolicus A6]
 gi|219858298|gb|ACL38640.1| two component transcriptional regulator, LuxR family [Arthrobacter
           chlorophenolicus A6]
          Length = 208

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 62/227 (27%), Gaps = 37/227 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +     S +  L      +  +            +  L+           
Sbjct: 1   MSTITVLLVDDHLVVRSGLRALLGTQPDIDVVAEAASGEQALELVRELS----------- 49

Query: 65  RWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    +D  +       + +R +      +   V           + +  + +   
Sbjct: 50  ----PGVVVMDLAMGDGMDGIEAIRRIRGLNSGQAILVF--------TTYDSDADIVRAV 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   +        ++          +A+      +        +
Sbjct: 98  DAGAMGYLLKDAAPEEIFAAVRGAVQGRSVMSP-------PVASRLFQQLR------NPE 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             LT RE E L+ +++G ++ E+   L IS  TV  ++A I  K   
Sbjct: 145 EVLTPREAELLSLLTQGLSNRELGQRLFISEATVKTHLAHIYSKLGV 191


>gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 12/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +     M  +    G S  L ++        LD+++     F+
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYM-VMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFE 71

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +          VL      F          +         Y         +   + 
Sbjct: 72  TCRQIKQQPDASNIPVL------FMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVA 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                 R +   R           A             F+LT REV+ L W++ GKT+ +
Sbjct: 126 SHLRTARTLQSARSTSQPPGINDAAAY-----TRLSSSFQLTEREVDVLRWVACGKTNKD 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           IA IL +S  TVN ++  I  K   +TR+ A + A+
Sbjct: 181 IADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|34500867|gb|AAQ73895.1| HrpY [Pectobacterium carotovorum subsp. carotovorum]
          Length = 213

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +    D L+ +           ++ ++T             
Sbjct: 4   PIRLMIADDHVIMREGLKQIFALDDSLSVVAEAGNGAQVLAQLRSVT------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       L+  +             R   L   ++             
Sbjct: 51  --PDLLLLDMSMPGISGEALISRVVAQ--------YPRLPILVLSMYSEAQIAQHALKSG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +   D   +   +  +    R I      ++        + +            L
Sbjct: 101 ARGYITKDKDPEALLAAIRRVAQGARYIDHTIAEQL------VFSNYAEGGRAEHD--VL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + +   ++G   + IA  L IS  TV+ + A +M K    T    + Y V   ++
Sbjct: 153 TAREHQIMIMFAQGMGINAIANELAISNKTVSTHKARLMEKMQFSTNVEIVKYVVSKKLI 212


>gi|89894771|ref|YP_518258.1| hypothetical protein DSY2025 [Desulfitobacterium hafniense Y51]
 gi|89334219|dbj|BAE83814.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     V  L +    +                  ++              
Sbjct: 20  IKVLVVDDHKLFALGVLALLSSEPDIVVTDVASNAEECLRMAEIVS-------------- 65

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +      +    +             +       A   
Sbjct: 66  -PHTVLLDINLPDSCGVDMISKI-----KQIDPDIGIVMLTGLSPLGHI---DASLAQGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +           +     +              D H  K   LT
Sbjct: 117 SGFLLKDCTKEEMITAIRKAAKGEGYFSQSMAPYLKEELV----RTPQQDPHDDKVASLT 172

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE+E    +  G  S EIA  L I++ TV+ +I +I+ K   K+R   +
Sbjct: 173 LRELEVFNLVVTGLRSKEIAEKLEITKRTVDFHIGNILLKLEAKSRLEIV 222


>gi|84685343|ref|ZP_01013241.1| DNA-binding response regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666500|gb|EAQ12972.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 203

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 61/228 (26%), Gaps = 26/228 (11%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L   +                     +  L+ + + F    LD  
Sbjct: 1   MRILIADDHDLLRDTLVAFLEAASGFETETAA-----DYDGAIALMEQSEPFDLVLLDLN 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +        D+                 T              +   T   
Sbjct: 56  MPGMNGIDGLERAMKIGGDQ--------RVALITGTATREIAQQALDLGAAGFLPKTLSA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    + +  D +                 +       +L  RE++ L  +
Sbjct: 108 KSLVNAVRFMAMGEQYVPVDFMT-------------AKEEAKHPLAEKLAEREMQVLKGL 154

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EGK++ EIA  L ++  T+  Y+ ++ RK     R+ A   A    +
Sbjct: 155 TEGKSNKEIARDLDLTEPTIKLYLKTLYRKIDVNNRTQAALVAREAGL 202


>gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 199

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++     V        L    G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTFQPDVD-----SVLQAKDGQEAIQLLEKESVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +   + +    V+          F              + Y      +A + 
Sbjct: 60  TGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAIKAGVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIATESGWL 199


>gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium
           kansasii ATCC 12478]
          Length = 215

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 72/246 (29%), Gaps = 32/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     +V +V+  +       V      S  +  +  +    +    +  L        
Sbjct: 1   MADSADRVTVVVADDHPVMRQGVVRALKSSGRVEVVAQVADGRAALDAIRQL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      ++   +A                +    F   P   
Sbjct: 53  -------RPAVALLDYKMPELDGLEVTHAIARDRLP--------TRVVLLSAFDDSPVVY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   + + +   D   I   ++        +       +                  
Sbjct: 98  KALAEGASGFLTKESDSDEIVNAVVRCAEGASYLPAGIAGGLAGEVTR---------RGR 148

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    LT RE + +T +++G +  +IA  L ++R+T+  ++ S+  K     R  A+A A
Sbjct: 149 GATTLLTEREAQVITMMADGLSVPQIASRLHLARSTIKTHVHSLYEKLGVSDRGAAVAEA 208

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 209 MRRRLL 214


>gi|238750229|ref|ZP_04611731.1| Transcriptional regulatory protein uhpA [Yersinia rohdei ATCC
           43380]
 gi|238711462|gb|EEQ03678.1| Transcriptional regulatory protein uhpA [Yersinia rohdei ATCC
           43380]
          Length = 196

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 36/221 (16%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--DS 76
           R +F+          A+++ L+  +       +  +               Q      D 
Sbjct: 4   RVAFIDDHDIVRSGFAQLLALEDDIQVVGEFSSAKQAR-------AGLPGIQANICICDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +  +   DL++ +                 +   +  +              + S    
Sbjct: 57  SMPDESGLDLLKDLPS-----------GMGVIMLSMHDSPALVEMALERGARGFLSKRCK 105

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +   G  ++ D   ++  +A                   LT RE E    
Sbjct: 106 PEDLVSAVRTVGSGGVYLMPDIAQQLARIAV----------------DPLTRREREVAVL 149

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +++GK   +IA +LG+S  TV+ + A++  K          
Sbjct: 150 LAQGKEVRDIAELLGLSPKTVHVHRANLFAKLCVSNNVELA 190


>gi|254471678|ref|ZP_05085079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp.
           JE062]
 gi|211958880|gb|EEA94079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp.
           JE062]
          Length = 233

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 9/219 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            + +    +GASH L+    +        +    WP +    +  +  
Sbjct: 14  ISEARAAKPVLDIVESYLRRLGASHILITGLPMPNRTIDSLVHRFRWPDERNGGVERTTL 73

Query: 96  DKYYNVLQRPTELFCPVFHTLP-------ENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
               + L        PV  ++        E              +  D       +++  
Sbjct: 74  SAGDSALMLGLSGNRPVVWSVSGTDTGNSELFAAIGEGAR-VMVIPVDALHPFQAMVVGA 132

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIA 207
                     L  + ++ +          V    +  +L+ RE   L   + GKT+ EIA
Sbjct: 133 GHQIAAEPYDLASLEIVCSAAFRRLFELGVISDQRPGDLSARERRVLELTALGKTAHEIA 192

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 193 ELLEISQRTVHAHLQNASAKLNASNKTHTVVEALRYGQI 231


>gi|2367439|gb|AAB69646.1| LuxR homolog [Pectobacterium betavasculorum]
          Length = 242

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 26/197 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
             I+ S +P + V     ++      V+        P        I     +        
Sbjct: 43  QMIIISSYPDEWVDLYKENKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFDLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQANMF---- 173
                N Y  +  D       L ++         ++  E       +L            
Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVEKFIEEKKDTFQMLLIEAYEEIISLC 162

Query: 174 ----KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               +S      KD   + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K  
Sbjct: 163 REMIESKKQLHNKDI-FSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLG 221

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI   V   ++
Sbjct: 222 VLNAKHAIRLGVELQLI 238


>gi|329926657|ref|ZP_08281068.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939066|gb|EGG35431.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 216

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 67/213 (31%), Gaps = 14/213 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L+  ++    M  + T   G +   LV     Q   +D  +      
Sbjct: 6   ILIAEDQTIVREGLETIINMEPEMEVVATTDNGQTACELVEQLRPQLVLMDIEMPVMNGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +  S  D           L    F      I   A   + Y    F   +I   +
Sbjct: 66  AATHQIKQSNPDTI--------VLILTTFTEEDFIIEALAKGASGYLLKDFTSHKIIASI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++      ++                   +++ LT RE++    ++E K + 
Sbjct: 118 REAIRGELMLPSKVAAKLA-----ARLRTTGVPQIPVQNYNLTPRELQIAKLMTEYKNNR 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           EIA +L I+  TV NYI+ I  K     R+ AI
Sbjct: 173 EIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|238796086|ref|ZP_04639597.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
 gi|238720031|gb|EEQ11836.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC
           43969]
          Length = 240

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 62/192 (32%), Gaps = 21/192 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAGM 126
           D +V S+W          +       VL        P               ++     M
Sbjct: 43  DFVVISNW-KKWFEFYTQNNFQFTDPVLLMAAHRIMPFSWDENIILKFPRLFDMAKEYNM 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILR---DRLWEIGLLAAYQANMFKSYDV----- 178
            N Y  +  D     + L L   K   +     D    I LL         S        
Sbjct: 102 INGYTFVLHDQHSNLVVLSLSADKNIDVEEIIGDDKGNIQLLLMITHEKMTSLYKDLNSK 161

Query: 179 ----HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                   +   + RE E + W S GK+  EIA+ILG+   T+ N++  ++RK       
Sbjct: 162 NNYYKMNGNEIFSNRENEIIYWASVGKSYQEIALILGVKLTTIKNHMGKVVRKLGVTNAK 221

Query: 235 GAIAYAVRNNIV 246
            AI+ AV   ++
Sbjct: 222 HAISIAVELQLI 233


>gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family
           [Intrasporangium calvum DSM 43043]
          Length = 209

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 72/230 (31%), Gaps = 25/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P     L+ ++  D ++       +                + Q +  D 
Sbjct: 4   AIRLLVVDDHPVVRAGLSMLLAADRSIELVGEAASAA----------EAVVVAQRRHPDV 53

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           ++      D V  +  +   +   +   P  +      +  + +         Y      
Sbjct: 54  VLMDLQLGDGVDGVGATR--RLLALEPAPRVVILTTHESDADVLASVEAGACGYLLKDAP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A +   +      G ++       +              +        L+GRE++ L  
Sbjct: 112 AADLIDAVRTAARGGTVLSPVVARRL-------------DERRRTPQPTLSGRELDVLRL 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG T+ +IA  L +S  TV +++     K    +R+ A+A A    ++
Sbjct: 159 VAEGGTNRDIARALFLSEATVKSHLVHAFGKLGVTSRTAAVATARSRGLI 208


>gi|229115274|ref|ZP_04244684.1| Response regulator [Bacillus cereus Rock1-3]
 gi|228668414|gb|EEL23846.1| Response regulator [Bacillus cereus Rock1-3]
          Length = 195

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 14/183 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       +        LD  + +    +  + +             +   L    F   
Sbjct: 20  GKEAVAYCKKHEVDIVLLDVRMPNMNGVEATKLICEET---------KTKPLILTTFDDD 70

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D  RIR  +  ++    ++    L +I              
Sbjct: 71  EYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIKSNLMESKEEECKI 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D         T RE+  +  I++G ++ EI+  L IS  T+ NYI S++ KT  + R+  
Sbjct: 131 D-----KSLFTERELSIIALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQI 185

Query: 237 IAY 239
             Y
Sbjct: 186 AIY 188


>gi|222432075|gb|ACM50923.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 59/196 (30%), Gaps = 24/196 (12%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
           + I+ S +P + V     ++      V+        P        I     +        
Sbjct: 43  EMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFNLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQAN------ 171
                N Y  +  D       L ++         D   E       +L            
Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKIISLC 162

Query: 172 -MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                           + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 163 REMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 234

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 10/222 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD--LFQEQKLDSIVSSDWPFDLVRCMA 91
             +        +   + A  ++    +F L R         + D ++++     +   +A
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDIVITNVAERRVGLFIA 72

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-----DNRYCS--LTFDVARIRIGL 144
              +       +    L  PV     ++ T P+ +      +        F     R   
Sbjct: 73  TLREALGTTRAKSAQFLATPVHGRSAQSDTYPSDLLFNEFRSGVFLFIPLFTPEGRR-YC 131

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           ++L  +     +  + ++ L A    +      +       LT RE E + W SEGKTS 
Sbjct: 132 LVLSGEREEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSA 191

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 192 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|313830264|gb|EFS67978.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
          Length = 223

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L    S    M  + +   G     LV   L     +D  +     
Sbjct: 4   RLVVTDDHPIMRQALAGYFSRVEEMEVVGQATNGREAVELVDQLLPDVVLMDLKMPEMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F      +         Y     +   +  G
Sbjct: 64  LTATRMIVSRH--------PSVRVVALTTFARRDIVVEAILAGAAGYLLKESEPEAVIAG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +       +  + +                 +L+  + + L  ++EG ++
Sbjct: 116 VRAVMAGQVTVSPGIARGVVEVFS-ARPCGGGSHQIDLTPVKLSDADDDVLKLLAEGLSN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S + V   +  + +K   ++R   +  A    +V
Sbjct: 175 AAIADELCLSESAVKQRLGHLAKKLGVRSRLEVLVRACELGLV 217


>gi|281415470|ref|ZP_06247212.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 202

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 23/224 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +   P     +  ++     ++         E +G    L           +D  +    
Sbjct: 1   MDDHPVVRAGVRAVVEAHPDLTVVAEAADGAEAIG---VLEAGEPAVDVVLMDLQM---- 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              +    A     + +  +Q         F T  + +         Y         I  
Sbjct: 54  GAGMDGVTATRAVRERWPGVQVL---ILTTFDTEADILAAVNAGAAGYLLKDAPSEEIAS 110

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +       + +       +                  G    L+ RE+E L  I+ G T
Sbjct: 111 AVRQAAAGRKALAPQVAATL-------------MGRMSGGSEVLSEREIELLELIARGAT 157

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   A  L IS  TV  ++  I +K     R+ A+  A R  I+
Sbjct: 158 NKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 201


>gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 240

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 23/239 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S       +++ +  LD   +    +  L     +   +  ++           ++ + 
Sbjct: 9   ASRDLLIQQMVSTISELDGQTAIENALEWLRRECNSERAMFYQFKGPVLLTF---ITCNV 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127
                +     E      V++                        +  + +       + 
Sbjct: 66  DDAWGKAYRQREFITQDPVIR-CYRNQLGFVNWQDAFRHYPVSACYEEIVDTCELLPAIS 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A     +  L   GR I  ++ + +  L     ++ +           LT
Sbjct: 125 YGYMN-HCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFC---SRGLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 181 HRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
 gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116]
          Length = 218

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                +  + ++  GL  +      + R     +  L  Y      +Y +    + ELT 
Sbjct: 106 GIFGPSDSMDKLCQGLSAIVSGDNWLSR---RLLDQLLTYYKGKESNYIIEPAIEVELTR 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           REV+ L  + +G ++ EIA  L IS +T+ +++ +I RK   K R+ A ++A RN
Sbjct: 163 REVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATSWAKRN 217


>gi|294813789|ref|ZP_06772432.1| two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326388|gb|EFG08031.1| two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
          Length = 224

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 66/245 (26%), Gaps = 24/245 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + +V+  ++    + +  + T    +  +                    G   
Sbjct: 1   MTMTGAPIRVVIADDEPLIRAGIRMILTSDREIQVVAEASN---------------GREA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LVR        LD  +        +  +           +     +    F      +
Sbjct: 46  VELVRAHGADVVLLDIQMPVMDGLTAMAELRR--------AVPSARVVILTTFGERDNVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +       A +   +         +       +    A      ++     
Sbjct: 98  RALEAGGAGFLLKDTAPAELIAAVRAAAAGDAYLSPGATRHVVDQLATGHAASRNERAR- 156

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +L+ RE + L+ + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A
Sbjct: 157 ERVAQLSARERDVLSLLGEGLSNADAGRRLHMSEATVKTYVSRILAKLECENRVQAALLA 216

Query: 241 VRNNI 245
               +
Sbjct: 217 RDAGL 221


>gi|163851095|ref|YP_001639138.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|240138277|ref|YP_002962749.1| two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254560788|ref|YP_003067883.1| two-component LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|163662700|gb|ABY30067.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|240008246|gb|ACS39472.1| two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254268066|emb|CAX23938.1| two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 222

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       V+ L   S  +  +  ++                GA+ +  +   
Sbjct: 6   IHVVLADDHPVFRHGVTSLIADSGEIVVVASVET---------------GAAAYRAIVQH 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++R +A +          R   +   V+ +            
Sbjct: 51  EPDVAILDINMPEMNGVTVLRHLARTGT--------RTQAIMLSVYESRVYIDQAFEAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +  +   G  +         L      +   S  V       L+
Sbjct: 103 RGYVLKRSAFQNIASAVRAVHAGGIYLDP------ALPERTAPHRRLSSSVDEAACSTLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L +++ G TS E+A  LG +   +    A    K    +R+  + +A+    +
Sbjct: 157 ERERDILRFVAFGFTSKEVADRLGATPKAIETQKARACTKLGLASRAQIVQFAILQGWL 215


>gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6]
 gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6]
          Length = 199

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++ L           A     G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTL--QPDVESVFQA---KNGQEAIQLLEKESVNIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +     +    V+          F              + Y     ++A + 
Sbjct: 60  TGLEVLEWIRAENLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERNIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGF 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADKLYLSNGTVRNYVTNILSKLHAGNRTEAANIAKESGWL 199


>gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 188

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 28/214 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R+  +    +    + A+         +    D          V      +       
Sbjct: 1   MIRVGLVSPYPALRAGLRAMLSGQPEVEVVAEGEDPGAVASAGVDVLLLDAPEG------ 54

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                         E    +     E     +G    +      V  +   +  +     
Sbjct: 55  --------GHPPGVEQGLIILGDRLEADLLGSGHPVGFLPRDASVEEVIAAVRAVASGLS 106

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++       I                   ++  LT REVE L  +++G  +  IA  LGI
Sbjct: 107 VVAPTLAARIV--------------RREPEEVPLTQREVEVLALMADGLPNKAIAARLGI 152

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S +TV  ++ SI+ K    +R+ A+A A R  ++
Sbjct: 153 SEHTVKFHVGSILAKLGASSRAEAVAIAARKGLL 186


>gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 254

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 65/241 (26%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +       S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQASQTVNSCLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT---LPENITPPA---------------GMDNRYCS 132
                 ++  V QR T    P   +     +                     GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                    +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIP 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|311896469|dbj|BAJ28877.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 170

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 12/176 (6%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +         R +            + P  L    F              + +
Sbjct: 1   MVLMDVRMPGLDGLAATRAILRG-------TDRPPKILVVTTFEADDYVYEALRAGADGF 53

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A +   + L      ++    +  +    A  A    +          LTGRE
Sbjct: 54  LLKRSRPAEVVQAVRLAATGETLLFPAAIRRLAAARAGHAADGGAVARA-----GLTGRE 108

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  ++ G ++ EI   L +   TV  ++++++ K   + R+ A+  A  +  V
Sbjct: 109 GEVLRLMARGLSNAEIGAQLHLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESGFV 164


>gi|309782680|ref|ZP_07677401.1| ExpA [Ralstonia sp. 5_7_47FAA]
 gi|308918458|gb|EFP64134.1| ExpA [Ralstonia sp. 5_7_47FAA]
          Length = 209

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S    +  + E + GAS   LVR        LD  +      
Sbjct: 4   VLIADDHAVFREGLGRILSDASDIEVVGEAIDGASTIDLVRNTPADVIVLDLSMPGRSGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+  +           + +   L   +       +         Y +    V  +   +
Sbjct: 64  DLIAQVHRD--------VPQLKILVLTMHAEDQYALRALRAGAVGYLTKEGAVKELEKAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                 G  + +     +       A+              L+ RE +    +S G +  
Sbjct: 116 RKAASGGTYMTQAVAELLIHNLGDPADRLLHQR--------LSDREFDIFLRLSRGDSLA 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L IS+ TV+ Y A I+ +         + YA+ + +
Sbjct: 168 TIAHDLCISKKTVSTYKARILERMNLPNDVALVRYALSHGL 208


>gi|260204041|ref|ZP_05771532.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
 gi|289573466|ref|ZP_06453693.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
 gi|289537897|gb|EFD42475.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis K85]
          Length = 216

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 32/245 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N + ++V +V+  +       V    + S  +  +   D                GA+  
Sbjct: 3   NPQPEKVRVVVGDDHLLFREGVVRALSLSGSVNVVGEADD---------------GAAAL 47

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L++  L     LD  +       +   +   E             L             
Sbjct: 48  ELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELP--------TRVLLISAHDEPAIVYQ 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   +         I   ++       ++    +  +   A               
Sbjct: 100 ALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPVAPV-- 154

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+
Sbjct: 155 ----LSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAM 210

Query: 242 RNNIV 246
           R  ++
Sbjct: 211 RQRLL 215


>gi|326772882|ref|ZP_08232166.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637514|gb|EGE38416.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 253

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 68/255 (26%), Gaps = 36/255 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            + V ++L  +D    + +  L   S     +            +  +            
Sbjct: 21  ARPVRVILVDDDPLTRAAIKPLLRPSQDYVVVAEAGDGHEAIDVVGRI------------ 68

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R        +     + P  +    +      +    
Sbjct: 69  ---EADIVLMDLGMPVMDGIEATR--------QICAAPRHPHVVALTTWDVDDAVVRVIE 117

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------------GLLAAYQAN 171
                Y         +  GL  +     ++    L E+                      
Sbjct: 118 AGAVGYLLKYSASEELHAGLRRVMAGESVLSPGALAELLRYVRSQPTAPTAAAYDLRSQE 177

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          L+ RE+E +   +EG T++EIA  L IS +TV  ++ S   +   +
Sbjct: 178 RQHAVAQAQQAAAGLSRRELEVIAAAAEGLTTEEIANRLYISVSTVKAHLRSAQERVGAR 237

Query: 232 TRSGAIAYAVRNNIV 246
            R      A R  ++
Sbjct: 238 NRVHLAVLAERAGLL 252


>gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 240

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 23/239 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S       +++ +  LD   +    +  L     +   +  ++           ++ + 
Sbjct: 9   ASRDLLIQQMVSTISELDGQTAVENALEWLRRECNSERAMFYQFKGPVLLTF---ITCNV 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127
                +     E      V++                        +  + +       + 
Sbjct: 66  DDAWGKAYRQREFITQDPVIR-CYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAIS 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A     +  L   GR I  ++ + +  L     ++ +           LT
Sbjct: 125 YGYMN-HCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFC---SRGLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 181 HRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|62249408|gb|AAX77679.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
 gi|84620011|gb|ABC59304.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum]
          Length = 242

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 24/196 (12%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
           + ++ S +P + V     ++      V+        P        I     +        
Sbjct: 43  EMLIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFDLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQAN------ 171
                N Y  +  D       L ++         D   E       +L            
Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKIISLC 162

Query: 172 -MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                           + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 163 REMIESKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 200

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 52/190 (27%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV          D  +      +    +  S  D           L    F   
Sbjct: 36  GEEAVRLVHELKPDVLVTDIEMPGLTGIEASEALRQSGSD--------TRVLIVTTFARP 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y         +   +  +    R I  +                   
Sbjct: 88  GYLQRALQAGVLGYVLKDAPSEELADAVRRVAQGQRAIASELA----------------- 130

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +  W     LT RE + L  + EGK++ EIA +L +S  TV NY+A   +K     R  A
Sbjct: 131 ETAWSAPVVLTARERDILRLVEEGKSNKEIARLLNLSPGTVRNYLAEATQKLGAANRIEA 190

Query: 237 IAYAVRNNIV 246
              A  N  +
Sbjct: 191 FQIARENGWL 200


>gi|117920179|ref|YP_869371.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117612511|gb|ABK47965.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 220

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    + +    +    D   +    + + T         
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALSSAFEHTQWYEADSADALQSVLDSQTVNY------ 54

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +           + L        V+             +      
Sbjct: 55  -------DLVLLDLQMPGSHG--YSTLIHLRSHYPELPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      +           A          D    K
Sbjct: 100 IHYGGSGFIPKSASMETLKEALTAVLFGDIWLPAG--------AEIIPIEDDDTDKMANK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|300787440|ref|YP_003767731.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796954|gb|ADJ47329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 30/239 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+     + + L  + E     V+ L      L  +           R+ AL        
Sbjct: 1   MDENAPVITVFLVDDHELVRRGVAELVDDEPDLTVVGQASSVAEAMARIPAL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      +L R +           L     L    F      +
Sbjct: 53  -------RPDVAVLDVRLPDGNGVELCRDLRT--------ALPGLRCLMLTSFTDEDSMV 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y        ++   +  +     ++    +  +        +  ++     
Sbjct: 98  EAVLAGAEGYVIKDVKGLQLVDAIRRVGSGETLLDARAVAAL-------VSELRAKTGKP 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G    L+ +E+  L  + E  T+ +IA  + ++  TV NY++ ++ K   + RS A   
Sbjct: 151 GPLAGLSEQELVLLDLLGESLTNRQIAERMFLAEKTVKNYVSRLLAKLGLERRSQAAVL 209


>gi|170690051|ref|ZP_02881218.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170144486|gb|EDT12647.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 220

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 63/243 (25%), Gaps = 32/243 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                ++++L  +          L   +  +              R  AL          
Sbjct: 1   MTAADISVLLVDDHAVVREGYRRLLEVNADVHVCGEAADAAQAYQRFCAL---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      + +R M   E             L   V          
Sbjct: 51  -----RPDVVVMDVSLPGASGIEAMRRMLARE--------ADARVLIFSVHEEAIFVRRA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y +       +   +  +  +   +  D    + L         ++       
Sbjct: 98  LDAGALGYVTKASAPDVLVEAVRTIARRASYLSPDISQALAL---------RNAFSEGPP 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +L+ RE E L  + +G T   IA  LG+S+ TV N+ + I +K            A R
Sbjct: 149 GRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASR 208

Query: 243 NNI 245
             +
Sbjct: 209 LGL 211


>gi|220920961|ref|YP_002496262.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219945567|gb|ACL55959.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 242

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            +  +               + + +G      +     QE +    ++S +    V    
Sbjct: 10  FVDEIHAASDEGGLVGAASRMADRMGYRWIAYLSMTDAQEHE----ITSTYAPPWVEHYF 65

Query: 92  LSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVA 138
            +  ++    +    E   P                    +     G+           +
Sbjct: 66  ANNYEQIDPCVLASREQSQPFRWGSLGPPIEIPENVLRLYDDARSYGIRAGITIPILGPS 125

Query: 139 RIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQANMFKSYDVHWGKDFE---LTGRE 190
                  +   +       R  +     + ++A             +  +     LT  +
Sbjct: 126 GRWSAFTMATDESETEALARQTDYLTSMMTMMALQFHARLLITAPRFSAETRPKLLTDVQ 185

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             CL  ++ G+     A  LG++  TV +++    ++   K  +  +  A    ++
Sbjct: 186 ARCLQAVANGEPMKVAAHELGLTHRTVIHHLNMARKRLGAKNITHTVKTAFHLGLI 241


>gi|291436295|ref|ZP_06575685.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339190|gb|EFE66146.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 224

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + +S +   ++ +  +                          LV
Sbjct: 1   MTAIRVLLVDDDPLVRAGLSFMMGGAEDIEIVGEAADGGEVE---------------ALV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +         +                 +    FH   + +    
Sbjct: 46  DRTRPDVVLMDIRMPTVDGLAATETLRRRADAPQ--------VVVLTTFHADEQVLRALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   +  +     ++      ++   AA  A   +       +  
Sbjct: 98  AGAAGFVLKDTPPAEILAAVRRVAAGDPVLSPAVTRQLMAHAAGTAADTRRAHARQ-RIA 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E    +  G  + EIA  L +S  TV  +++  + K     R      A    
Sbjct: 157 ALNDREREVAVAVGRGLANAEIAARLFMSVATVKTHVSRTLAKLGLNNRVQIALLAHDAG 216

Query: 245 IV 246
           ++
Sbjct: 217 LL 218


>gi|333024388|ref|ZP_08452452.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744240|gb|EGJ74681.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 201

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 11/191 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G       R        +D  +         R +                 L    F 
Sbjct: 22  ADGEEALARARALRPDVVLMDVRMPRLDGVAATRAIVAEGLAD---------VLVLTTFD 72

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                          +   T +   +   +  +     ++       +  LA +      
Sbjct: 73  LDAYVFGALRAGAAGFLLKTAEAGELVAAVRTVAAGEGVVDPAVTRRL--LAEFARGGTG 130

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE E L+ + EG  + EIA  + ++  TV ++++ ++ K   + R 
Sbjct: 131 RERPAPEGLARLTPREREVLSCLGEGLGNAEIAQRIDVAEGTVKSHVSRLLAKLELRNRL 190

Query: 235 GAIAYAVRNNI 245
            A   A    +
Sbjct: 191 QASLLARDLGL 201


>gi|318061538|ref|ZP_07980259.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076628|ref|ZP_07983960.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 219

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 63/238 (26%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++      V+ +   +  +  +                    G          
Sbjct: 1   MRVLLADDERLVREGVAAILASAPGIEVVGQAGD---------------GREALAEGARL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +            A         VL          F          AG  
Sbjct: 46  RPDVALLDVRMPVLDGLGAAEEFAR--------VLPGTAVGMLTTFSEGEYVERALAGGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D   +  G+  L   G  +         +L        +           LT
Sbjct: 98  AGFLLKSGDPYELIAGVRALAAGGAFLAPRVTR--HVLDGLGGRRLERAAGARRAVARLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  ++ G ++  IA  LG+S  TV  Y++ ++ +     R  A   A    +
Sbjct: 156 PREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRAAVLAHEAGL 213


>gi|264676607|ref|YP_003276513.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262207119|gb|ACY31217.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 212

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +      +  ++             ++                  
Sbjct: 2   IHVVLCDDHAILRRGIRDTLAEATDISVTAEAGSYAELREQLREAA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  +        ++       P        +       
Sbjct: 48  -CDVLLLDINMPGRSGLEVLASVRETH-----PQIRVIMVSMYP---EDQYALRSIKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    + +  +      +LA   A               L+
Sbjct: 99  AGYANKAGDPVLLIDAVRTVHSGLKYLTAEVA---QMLADSLAQPAAPV-----PHETLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G+   +IA  L +S  TV+ Y A ++ K    + +   AYA++N ++
Sbjct: 151 EREMQTLLKIASGQRQTDIAQELMLSPKTVSVYRARVLEKLGMGSNAELTAYAIKNGLI 209


>gi|256419067|ref|YP_003119720.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256033975|gb|ACU57519.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 219

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 14/218 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-------EQKLDSIVSSDWPFDLVR 88
           +  +D    +   +  L         L       +       EQ  D ++      D+  
Sbjct: 7   IAVVDDHTMFRRGLSVLINLFPNYEVLFEAASGKELIEKMTIEQLPDIVLLDVNMPDMDG 66

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             +     +++  ++                I         Y     + + ++     + 
Sbjct: 67  YASAEWLHQHHPDIRILALSTM---DAETAIIKMIRHGAKGYILKDAEPSELKQAFDDVI 123

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G         ++        N             +L+ RE+E L      K+   IA 
Sbjct: 124 TLGYYYNDTVTRKV----MQSINALIDDKSALNAITKLSDREMEFLRLACSEKSYQLIAK 179

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +S  TV+ Y  ++ +K +  TR G + YA++N +V
Sbjct: 180 EMFVSERTVDGYREALFKKLSVSTRVGLVLYAIKNKLV 217


>gi|254410670|ref|ZP_05024449.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182876|gb|EDX77861.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 20/210 (9%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
            +T   G     L+          D  +     ++LV+ +            +    +F 
Sbjct: 12  VVTAEDGQEALSLIDKYHPHLIVTDINMPKLNGYELVQQVRKR------PAFRLLPVVFL 65

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL----------- 159
               +  E I       + Y    F++  +   +  L  + +++  +             
Sbjct: 66  TERSSTEERIKGYQLGCDLYLPKPFEMKELSAVIRNLLERSQMMQAELRFSSTDTGPSTP 125

Query: 160 -WEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNT 216
             E         +  ++            LT RE + L  ++ G ++ EI   L +S  T
Sbjct: 126 SPETTEATPKSESTPRAIASPTSPSNVLHLTQREQQVLDLLTTGLSNSEIGNKLHLSPRT 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  Y++S++RKT T  R+  + +A+ N++V
Sbjct: 186 IEKYVSSLLRKTETSNRAEIVRFALENHLV 215


>gi|41406787|ref|NP_959623.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254773764|ref|ZP_05215280.1| NarL_1 [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41395137|gb|AAS03006.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 217

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +       V      S  +  +   +                G++   L++  
Sbjct: 10  VRVVVADDHPLFREGVVRALVSSGAVNVVGEAED---------------GSAALELIKSH 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +                 L                   
Sbjct: 55  QPDVALLDYRMPGMDGAQVAAAVRADGL--------ATRVLLISAHDESAIVYQALQQGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       + I   ++       ++    +  +   AA      +           L+
Sbjct: 107 AGFVLKDSTRSEIVKAVLDCAQGRDVVAPALVGGL---AAEIRQRAEPTGPV------LS 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  ++
Sbjct: 158 AREREVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216


>gi|331696706|ref|YP_004332945.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951395|gb|AEA25092.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 238

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 29/242 (11%)

Query: 9   NIVLNREDEQRTSFV--SHLPTRSDLLARM--IPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +V +  +E  +  V   H   R  + AR+  +             A             
Sbjct: 21  AMVPHPREELFSVLVVDDHPLLREAIAARLRSMGAGTVHEAASVAEARARAQ-------- 72

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      DLV  +     +           +            +   
Sbjct: 73  ANGPCDLAILDLGLPDGSGLDLVTELRALGWN---------RLVVLASSDDPYAVRSAFQ 123

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   +   A +  G+  +   G          +                      
Sbjct: 124 AGAQAYLLKSASPAVVTDGVKRVLDGGVYADPTVAPLLAT--------GTRVPGTDNTPR 175

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A A+R  
Sbjct: 176 ELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAG 235

Query: 245 IV 246
           ++
Sbjct: 236 VI 237


>gi|330809798|ref|YP_004354260.1| two-component system response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377906|gb|AEA69256.1| putative two-component system response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 222

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 58/240 (24%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  + E   +    +   +     +               L              
Sbjct: 4   PLRLLLADDHEVTRTGFISMLAGNPGFEVVGQARDGQEALDLCERL-------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +         R +   +       ++           +           
Sbjct: 50  -QPDIAILDIRMPVLNGLGAARILQQRQ-----PGIKVVIFTMD---DSPDHLEAAIGAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   L  +      +       +         M +       +   L
Sbjct: 101 AVGYLLKDASRDEVLDALKRVAQGEEALNSSVSARL------LRRMTERGANGATQVQAL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    V   +V
Sbjct: 155 TARERQVLGLVAGGFSNREIGEKLGIAPGTAKAHVERVIGKLGAADRTQAAVRGVALGLV 214


>gi|323358035|ref|YP_004224431.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274406|dbj|BAJ74551.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 237

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 15/218 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       L   ++   R+  + E   G     + R        +D  +++    +  R
Sbjct: 32  DDEALVRHALRAFLAADERVTLVGEASDGTEVVDVCRATSPDVVLMDIKMTNVGGVEATR 91

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +             +   +    F T    +         Y        +I   ++   
Sbjct: 92  HVLEWN--------PQCRVVALTTFTTEWRALEVLRAGACGYLVKNSTPTQIVDAIVAAH 143

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R++  +          +     ++ +     D  L+ RE + +  I+ G ++ EIA 
Sbjct: 144 AGDRVVSPEVQER------FVRAAIEAGESRATGDPTLSDRERQIIELIANGLSNAEIAD 197

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +L  + +TV   I  I      + R   +  A    ++
Sbjct: 198 VLHYAESTVKADIRHINHLWGVENRLQIVLRATELGLI 235


>gi|171056933|ref|YP_001789282.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170774378|gb|ACB32517.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 61/229 (26%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V            ++   C     +   A     G      +   L     LD  
Sbjct: 2   IRVMLVDDHTIVRMGFRMLLQ-SCADDIEVVAEAPG---GEEALAQIDTVLPDVLVLDLS 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+R +             R   L               A     Y S     
Sbjct: 58  MPGMTGLELLRRLKARNS--------RTRVLVLSAHEDTAHPRRVLAAGALGYLSKRGAP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R I      ++ L                     L+ RE E    +
Sbjct: 110 EALVEAVRRVAAGQRYIDPAIAQKLAL---------AQLGDEPSPVDALSEREFEVFVQL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G    +IA  L +S +TV  ++ ++ +K     ++     A+R  ++
Sbjct: 161 ARGAGVADIAAQLKLSASTVGTHLYNVKQKLGASNQAELTLLALRWGLI 209


>gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 199

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++     V        L    G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTFQPDVD-----SVLQAKDGQEAIQLLEKESVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +   + +    V+          F              + Y      +A + 
Sbjct: 60  TGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 234

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 10/222 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + A  ++    +F L R            +V ++ P   V     
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITNVPERRVGLFIA 72

Query: 93  SEKDKYYNVLQRPTE-LFCPVFHTLPENITPPAGM-----DNRYCS--LTFDVARIRIGL 144
           + ++   NV  +  + L  PV     E    P+        +        F     R   
Sbjct: 73  TLREALGNVRAKSAQFLATPVHGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRR-YC 131

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           ++L        +  + ++ L A    +      +       LT RE E + W SEGKTS 
Sbjct: 132 LVLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGRLTQREAEIVKWTSEGKTSA 191

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 192 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|58584166|ref|YP_203182.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428760|gb|AAW77797.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 301

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 18/220 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY--VGASHFLLVRWDLFQEQKLDSIVSS 80
           ++ L    D       L   V   M    L E   V A + L           +D  +  
Sbjct: 80  MTTLLIADDHPLFREALRGAVQRVMPGVQLLEADNVDALYTLADAQPDADLLLMDLNMPG 139

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              F  +  + +        V+         V                 +   + D   I
Sbjct: 140 AQGFSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTI 191

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  +    R I  +                        +  +LT ++   L  +  G
Sbjct: 192 GRALATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAG 243

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 244 RLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 283


>gi|329945473|ref|ZP_08293217.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528963|gb|EGF55901.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 221

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 29/238 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++V +V+  +D    + +  +      +  +                    G S 
Sbjct: 1   MDSPQRRVRVVIVDDDALVRAALRLILESDSGVTVLGEGSD---------------GRSG 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +   R        +D  +           +A                L    F T     
Sbjct: 46  YDAARSLRPDVVLMDLHMPGTDGVWATAQIAAD--------CPDTKVLVLTAFDTDAMVA 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +         I   +       R      L  +   A       +++    
Sbjct: 98  AALRAGATGFLLKDSAPEIIFRAVHAAADGQRAFSGSVLDRLVEAAVEATPQRRAFPE-- 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                +T RE +    +++G  + EIA  L +  +TV  ++++++ K     R     
Sbjct: 156 ----TVTDRERQVALLVAQGLGNSEIAEELVVGASTVKTHVSALLDKFGVSNRVQLAV 209


>gi|323528300|ref|YP_004230452.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323385302|gb|ADX57392.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 64/238 (26%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  +          L   +  +              R  AL               
Sbjct: 6   ISVLLVDDHAVVREGYRRLLELNVDVHVCGEAADAAQAYQRFCAL--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R M   E D           L   V               
Sbjct: 51  RPDVVVMDVSLPGASGIEAMRRMLAREPD--------ARVLIFSVHEEAIFVRRALDAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +  +   +  D    + L         ++         +L+
Sbjct: 103 LGYVTKASAPDVLVEAVRTIARRASYLSPDISQALAL---------RNAFSEGPPGRQLS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  + +G T   IA  LG+S+ TV N+ + I +K            A R  +
Sbjct: 154 AREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASRLGL 211


>gi|262373728|ref|ZP_06067006.1| glycerol metabolism activator [Acinetobacter junii SH205]
 gi|262311481|gb|EEY92567.1| glycerol metabolism activator [Acinetobacter junii SH205]
          Length = 216

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSIPQAQIQETADVDEFYERLEHGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPAIPIIVVSAHEETSII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +     G                  +   LT
Sbjct: 99  MGYIPKSSHPSHIGEAIKHVLEGEIWLPPNLPTHSGF-----DPRAADETALAERLQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|284991540|ref|YP_003410094.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064785|gb|ADB75723.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 69/236 (29%), Gaps = 34/236 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +S L   +D L  +  +                 G +   LV   
Sbjct: 2   IRVLVVDDHAVVRRGISSLLAAADGLECVGAVGD---------------GDTALELVEQL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++R +             R   L    F      +       
Sbjct: 47  DPDVLLLDLSMPGRDGVTVIRVLRERGH--------RTPVLVLTSFGEPDLVVPALVAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   I   +  +   G  +         ++ A      +           LT
Sbjct: 99  DGYLLKYQDGESILDAVRCIAAGGAPVDP-------MVTAAVLADLRDRGQGD----LLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE E L  + +G  +  IA  L IS  TV  ++  I+++     R+ A  +A R 
Sbjct: 148 DREKEVLELVRQGLPNKVIARRLRISEATVKTHVTRILQRIGATDRTQAALWAERR 203


>gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 19/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L   +++T  +    E   G      +         LD  +     
Sbjct: 7   HVFLVEDHAFTREGLRAAINFTPGLRVTGEARSGEEALERLPHAHAHVVVLDIGLPGMDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +                 +         E     A   + YC  + D A + + 
Sbjct: 67  VETAARVKA--------AFPALRIVMLTAHQLREEVFAALASGADAYCLKSGDPALLPLA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +       +  +               G+   L+ RE E L  +++G ++
Sbjct: 119 IQAAAAGSAYLDPQVAHLVLGV----------VRAPDGEVSALSDRETEVLRRVADGLSN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S +TV  ++  I+ K +   R+ A   A+R  ++
Sbjct: 169 KEIARDLGVSVSTVKVHVQDILTKLSASDRTHAAVKALRAGLL 211


>gi|302526068|ref|ZP_07278410.1| two component system DNA binding response regulator [Streptomyces
           sp. AA4]
 gi|302434963|gb|EFL06779.1| two component system DNA binding response regulator [Streptomyces
           sp. AA4]
          Length = 205

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 21/222 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +     +  + E   A    +          +D    S  P 
Sbjct: 3   RLLLADDHPVVRAGLRAVLETEPDLEVVAEASSAEE-AVRLAGGVDVVLMDLQFGSGMP- 60

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                       +       P  L    + T  + +         Y         +   +
Sbjct: 61  ------GSEATAQITAAADAPKVLVLTTYDTDGDILAAIEAGATGYLLKDAPPEDLAAAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++           A    N  ++          L+ RE+E L  +++G ++ 
Sbjct: 115 RNAAAGQTVLAPAV-------AHRLMNRMRTPAAA------LSPREIEVLGLVADGLSNL 161

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EI+  L +S+ TV +++  I  K    +R+ A+A      ++
Sbjct: 162 EISKRLFLSQATVKSHLVHIYAKLGVDSRTAAVAAGKARGLI 203


>gi|239979679|ref|ZP_04702203.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 281

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 64/260 (24%), Gaps = 41/260 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-----------G 57
                R D +      H    +    R++  D        + AL               G
Sbjct: 19  RTTRTRPDARTAPLRPHQTPAAGRTLRVVVADDNQVVRAGLSALLSARPGIRVVAEAGDG 78

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
                  R        LD  +        +  +           ++    L         
Sbjct: 79  HRALAATRHHRPDVVLLDVRMPGVDGLAALPHL-----------VRLAPVLMLTYSRERD 127

Query: 118 ENITPPAGMDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFK 174
                       Y     F   ++   +         +       +   L+A    +   
Sbjct: 128 TVQRALGLGAVGYLVHGEFTADQLARAVRDAHEGHAHLTPSARNALLAHLVAPAAPHRPP 187

Query: 175 SYDVHWGKDFE----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             +     +                  L+ REVE +  I+ G ++ +IA    IS  TV 
Sbjct: 188 VSNPPTSGETPSRLQSPVGESNRAAHGLSSREVEVMELIASGMSNQQIAATCFISEKTVK 247

Query: 219 NYIASIMRKTATKTRSGAIA 238
           N+I  I  K     RS AIA
Sbjct: 248 NHINRIFAKLHAPNRSAAIA 267


>gi|229011126|ref|ZP_04168319.1| Response regulator [Bacillus mycoides DSM 2048]
 gi|229166685|ref|ZP_04294435.1| Response regulator [Bacillus cereus AH621]
 gi|228616682|gb|EEK73757.1| Response regulator [Bacillus cereus AH621]
 gi|228750009|gb|EEL99841.1| Response regulator [Bacillus mycoides DSM 2048]
          Length = 212

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVLDTVNDGKEAVAYCKKYEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKI----KSNLMESKEEESKIDKSL-FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|119468997|ref|ZP_01612022.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonadales bacterium TW-7]
 gi|119447649|gb|EAW28916.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonadales bacterium TW-7]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 17/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +++ +  D    +   +           E   +S F      L +++ LD ++       
Sbjct: 1   MSQFLIADDHPLFREALKGALSAKFEGLEVFESSDFDSTLQVLSEQEDLDILLLDLHMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                 L    + Y  L             +             +   +     I   + 
Sbjct: 61  NGDLYGLIRIREEYPSLPIAVVSG---SEDVNIVSKVMGYGAMGFIPKSSSSDDIANAIN 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      + ++   ++  +      +             LT ++   L ++ EG  + +
Sbjct: 118 QILEGDTWLPKELKNKVAEIEGEDREIAAQVAS-------LTPQQYRVLQYLHEGLLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 171 IAYELHISEATVKAHITAIFRKLGVYNRTQAVLIAAKLQL 210


>gi|163939641|ref|YP_001644525.1| two component LuxR family transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861838|gb|ABY42897.1| two component transcriptional regulator, LuxR family [Bacillus
           weihenstephanensis KBAB4]
          Length = 224

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 17  ILIADDNSFIREGMKIILNTYEEFEVLDTVNDGKEAVAYCKKYEVDIALLDVRMPNMNGV 76

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 77  EATKLICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 127

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 128 KGVYNGQTVMQDVVLDKI----KSNLMESKEEESKIDKSL-FTERELSIIALIAKGFSNK 182

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 183 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 217


>gi|290954880|ref|YP_003486062.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644406|emb|CBG67491.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 219

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 68/218 (31%), Gaps = 11/218 (5%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D        +  +  +  +  +    G      VR +      LD  +       ++R
Sbjct: 3   VDDEALVRSGFELILGASEDIEVVATAGGGHAVETVRRERPDVVLLDIRMPDVDGLTVLR 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                       V+          F      +T        +     +  ++   +  L 
Sbjct: 63  ---ELRTMPDPPVVA-----MLTTFDADEYILTALHSGAAGFLLKDTEPEQLAHLVRTLV 114

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G ++          L    +    + D    +   LT RE + L  ++EG ++ +I  
Sbjct: 115 AGGVVLSPKASR---TLLHSHSGTGAAVDEEAARVRLLTARERDVLVLVAEGLSNADIGA 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +   TV +++++I+ K    +R  A   A R  ++
Sbjct: 172 RVHLGAGTVKDHVSAILGKLRVASRVQAALLAQRAGLL 209


>gi|332163428|ref|YP_004300005.1| two-component system response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607927|emb|CBY29425.1| transcriptional regulatory protein UhpA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667658|gb|ADZ44302.1| two-component system response regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330863674|emb|CBX73779.1| transcriptional regulatory protein uhpA [Yersinia enterocolitica
           W22703]
          Length = 196

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 61/218 (27%), Gaps = 32/218 (14%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R  F+          A+++ L+  +       +  +         +          D  +
Sbjct: 4   RVVFIDDHDIVRSGFAQLLALEDDIQVVGEFSSAKQAR-----AGLPGLQANICICDISM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   DL++ +                 +   +  +              + S      
Sbjct: 59  PDESGLDLLKDLPS-----------GMGVIMLSMHDSPALVEMALERGARGFLSKRCKPE 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G  ++ +   ++  +A                   LT RE E    ++
Sbjct: 108 DLVNAVRTVGSGGVYLMAEIAQKLARVAI----------------DPLTRREREVAVLLA 151

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +G    +IA  LG+S  TV+ + A++  K         
Sbjct: 152 QGMEVRDIAESLGLSPKTVHVHRANLFAKLGVSNNVEL 189


>gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 210

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 16/217 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRC 89
           R+   D  +     + AL +  G              D      +D ++S      L   
Sbjct: 5   RIALADDQILVRAGLRALLQQQGVEVVCEADDGQGLLDALTIHTVDVVLSDIRMPGLDGI 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            AL +         R   L    F      +         +         +R  +  +  
Sbjct: 65  QALEQLR---ARGDRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAIERVAA 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++          ++         +            REV  L  ++ G ++ EIA  
Sbjct: 122 GDTLLQP--------VSTDPVRARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIART 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 174 LFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|302536569|ref|ZP_07288911.1| two-component system response regulator [Streptomyces sp. C]
 gi|302445464|gb|EFL17280.1| two-component system response regulator [Streptomyces sp. C]
          Length = 232

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 56/222 (25%), Gaps = 18/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    +  + +   G     L R        LD  +     
Sbjct: 9   DVLIADDNPVVRAGLSALLATAGDLRVVAQARDGREALHLTRLHAPDVILLDVRMPGVDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL-TFDVARIRI 142
              +             VL                           Y     F    +  
Sbjct: 69  ISAL-----PHLVCLAPVL------MLTYSQESEVVREALLLGAVGYLIHGEFTADELVR 117

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTWI 197
            +                 +       +    S      +      F L+ REVE +  I
Sbjct: 118 AVRDARDGRAHFTPTAATAVLAELRSSSQTQPSVAQSTERVHNSVVFGLSSREVEIMDLI 177

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + G  + +IA    IS  TV N+I  I  K  + +RS AIA 
Sbjct: 178 ASGMNNQQIAGACFISEKTVKNHINRIFAKLQSTSRSEAIAR 219


>gi|163858791|ref|YP_001633089.1| virulence factors transcription regulator [Bordetella petrii DSM
           12804]
 gi|163262519|emb|CAP44822.1| virulence factors transcription regulator [Bordetella petrii]
          Length = 208

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 19/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D  +  + L   +S  + +  + E   G      VR        LD  +   
Sbjct: 1   MTSVLIVDDHPSLRLILRQQLSQMLGVSQIIEAGNGQDAVQAVRQHEPGLVILDIDLPKI 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  + L         ++            +       A     Y S   ++  I 
Sbjct: 61  NGLEAIPRIKL-----IKPDIRILVISAQ---DPVVFAPRVKAAGAQGYISKVQELPEIV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     +        +            S      K   L+ +E+  +  +  G 
Sbjct: 113 RAIETVLAGYSVFPDVAHRPV----------PSSDADAANKIERLSDKEIIVMQMLVRGM 162

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +I   L IS  TV+ Y   +M K    +    + +A R+ IV
Sbjct: 163 SNKDIGDALFISNKTVSTYKTRLMAKLGVGSLVELVDFARRHQIV 207


>gi|116669051|ref|YP_829984.1| two component LuxR family transcriptional regulator [Arthrobacter
           sp. FB24]
 gi|116609160|gb|ABK01884.1| two component transcriptional regulator, LuxR family [Arthrobacter
           sp. FB24]
          Length = 208

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 61/227 (26%), Gaps = 37/227 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +     S +  L      +  +                    G     L 
Sbjct: 1   MNPITVLLVDDHLVVRSGLKALLGTQPDIEVVAEAAS---------------GEEALALT 45

Query: 65  RWDLFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    +D  +       + ++ +             R   L    + +  + +   
Sbjct: 46  EQLSPAVVMMDLAMGPGMDGIEAIKQLRRRN--------ARQAVLVFTTYDSDADIVRAV 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         I   +        ++          +A+      +        D
Sbjct: 98  DAGAMGYLLKDAAPDEIFAAVRGAVQGRSVMS-------APVASRLFQQLR------NPD 144

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             LT RE E L+ ++EG ++ E+   L IS  TV  ++A I  K   
Sbjct: 145 EILTPREAELLSLLTEGLSNRELGQRLFISEATVKTHLAHIYAKLGV 191


>gi|302538489|ref|ZP_07290831.1| two component system response regulator [Streptomyces sp. C]
 gi|302447384|gb|EFL19200.1| two component system response regulator [Streptomyces sp. C]
          Length = 226

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 64/240 (26%), Gaps = 24/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L  ++      V  +   +D +  +                    G     L   
Sbjct: 8   PIRVLLADDETMIRHGVRLILRHADGIEVVAEAAD---------------GRQAVELAAV 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +        +  +            +         F      +      
Sbjct: 53  HRPDVALVDIRMPVCDGLAAIAPLLSL-----DPAPRVVM---LTTFGDDENVVRALREG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFE 185
              +         +   +        ++       +            +       +   
Sbjct: 105 AAGFLLKDEGPQELISAVRAAAAGDAVLSPGVTGAVISRMLGAREPAGAGGAAADERIAR 164

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LTGRE + L  + +G ++ EIA  LGI   TV  ++ +I+ KT + +R  A   A R  +
Sbjct: 165 LTGRERDVLAALGDGLSNQEIAARLGIGTGTVKTHVGAILDKTGSASRVQAALLAHRTGL 224


>gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 203

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 37/238 (15%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +++    +D L  +           ++ ALT                 
Sbjct: 1   MIVDDHPIVREGLANFIEIADDLTVVATASNGQEALEKLAALTRQ-------------PD 47

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP--PAGMDN 128
              +D  +       L+  +                         +   +          
Sbjct: 48  LILVDLQMPEMSGKKLLEEL-------------PTLSNVLIFSTEIDGELAQHFIQKGVR 94

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     D   I   +  L      I          +++        +  +      +T 
Sbjct: 95  GYLLKDEDPTDIVNHIQKLLADDSYIA---------ISSEVLTASFQHRQNEENVPTITE 145

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ + L  +++G T+ EIA  L ++  TV  Y+  +        R+ AIAYA+R+N++
Sbjct: 146 QQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 203


>gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073317|gb|ADJ62716.1| virulence regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 18/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   +S    M    E   A     LVR   +    LD  +   
Sbjct: 1   MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++++ +   +       L        P        +       + Y         + 
Sbjct: 61  SGVEVLKQIKREK-----PELPVLMLSMHPESR---YAVQVLRSGASGYVQKEALATELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    + I       +           +  D        L+ RE E    + +G+
Sbjct: 113 NAINTILRGHKYISYGVAELLT---------SEPVDSEKPLHETLSQREYEIFYKLGQGQ 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +IA  L +S  TV+ Y + +++K +    +  I YA++NN++
Sbjct: 164 GVTQIADELCLSVKTVSTYRSRVLQKMSMTNNADIIYYAIKNNLI 208


>gi|226953416|ref|ZP_03823880.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|226835847|gb|EEH68230.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIQETADVDEFYKRLEHGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPAIPIIVVSAHEEVSII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    +                   +   LT
Sbjct: 99  MGYIPKSSHPSHIGEAIKHVLDGEIWLPPNLPTHVSF-----DPRAADETALAERLQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|300702624|ref|YP_003744224.1| two component response regulator transcriptional regulator protein
           [Ralstonia solanacearum CFBP2957]
 gi|299070285|emb|CBJ41577.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum CFBP2957]
          Length = 232

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 68/245 (27%), Gaps = 25/245 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+  +++ +  +D      ++     S  +  +            +              
Sbjct: 9   ELPAIHVAIVEDDPGFLDALTQALACSPDMRLIGVAGSRAEGLRLL-------------- 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      D++   A              + +    F      +   
Sbjct: 55  -DGTPADVLLVDLGLPDGSGIDVIEAAARKWS--------ACSIMVSTHFGDETHVMRSI 105

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWG 181
                 Y       ARI   +  L   G  I      +I                     
Sbjct: 106 EAGAAGYLLKDSSAARILDEIRSLASGGSPISPIIARQILARFRQGGARGAADEAPPASA 165

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K    +++ AI  A 
Sbjct: 166 SPPLLSAREKEVLDLITKGFTTQEIAKLMALSHFTVRTFVRRIYSKLKVTSKAEAIYEAR 225

Query: 242 RNNIV 246
              ++
Sbjct: 226 TLGLL 230


>gi|182413500|ref|YP_001818566.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840714|gb|ACB74966.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 68/243 (27%), Gaps = 24/243 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ ++L  +       +  L  +   L  +               L            
Sbjct: 1   MKRIRLLLVDDQSLFREGLRLLLAQQPDLEIVAEAANGEEAIAAAQRLA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R +                 L    F    E     A
Sbjct: 50  ----PAVVLMDLRMPVMNGVEATRRLMAGNF--------AGRILVLTTFEEDEEVFAALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKD 183
                Y        ++   + L       +      + +   +       +         
Sbjct: 98  AGAAGYLLKASPSDKLIAAIRLTARGESFLEPSVTAKVLAHFSRLAQQAPRPPKPPPPLA 157

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L  ++EG+++ EIA  L I+  TV N++++++ K     R+ A       
Sbjct: 158 EPLSVREREVLGLLAEGRSNKEIASALAIAEGTVKNHMSNVLGKLGALDRTQAALRGREL 217

Query: 244 NIV 246
            +V
Sbjct: 218 GLV 220


>gi|256390814|ref|YP_003112378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357040|gb|ACU70537.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 226

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 64/228 (28%), Gaps = 12/228 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           V  L      L R               A     G     + R        +D  +    
Sbjct: 3   VRVLLADDQPLVRAALAMAIADLPDIEVAGEAGDGLHAVRMTRELCPDVVVMDIRMPGTD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +                 +    F              + +      V+ I  
Sbjct: 63  GIEATRMITG--------GAGSARVIVLTTFDDDDNVYNALRAGASGFLVKDMAVSDILA 114

Query: 143 GLMLLFPKGRIILRDRLWEI----GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           G+ ++     +I       +                       +   +TGRE E LT++ 
Sbjct: 115 GIRVVAAGDALIAPKVTRRLIAQFASRPRPATAPPTVPAAPPRRIEAITGREREALTFVG 174

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ EI V +GIS  TV  Y+  ++ K   + R+  +  A  N +V
Sbjct: 175 RGLSNAEIQVAMGISAATVKTYVTRLLAKLDARDRAQLVIAAYENGLV 222


>gi|149926392|ref|ZP_01914653.1| Two Component Transcriptional Regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149824755|gb|EDM83969.1| Two Component Transcriptional Regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 71/225 (31%), Gaps = 27/225 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALT-EYVGA----------SHFLLVRWDLFQEQKLDSIVSSD 81
           + R+  +D           +  E +G               L+R        LD  +  +
Sbjct: 1   MIRLAIVDDHAIVRAGFREMLNEELGMCIQFEAGTAQEARSLLREHNCDVLMLDLSLPDE 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              DL+R +            ++   L    F      +       + Y     D + + 
Sbjct: 61  NGIDLLRAVKQRH--------EKTQVLVISSFSEERYALPMIRSGASGYLCKDCDRSDLV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R I  +    +            + +       EL+ RE +    +  G+
Sbjct: 113 NAIHTVAQGRRYISANTAELLA--------REMTGESDKPAHQELSERERQVFMRLVRGE 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   IA +L +S  TV+ Y + ++ K    + +    YA ++ ++
Sbjct: 165 SVSAIAQVLHLSVKTVSTYRSRLLDKLGVNSNAELATYAHQHGLL 209


>gi|71737566|ref|YP_275380.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71558119|gb|AAZ37330.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320323892|gb|EFW79976.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328029|gb|EFW84034.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875642|gb|EGH09791.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVAEMPGYAIIGETADGAQLSSLAQRL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    + +  +          V      L   +       +        
Sbjct: 49  PDIILLDIWMKSVDGLEALEHLLK--------VQPHCKVLILSMHTDPDMIMRALDIGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +   A       ++        + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNNERYLSPAIAHTVIERALRGTRSDRARAAKER--YHLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 216


>gi|324325861|gb|ADY21121.1| LuxR family DNA-binding response regulator [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 212

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGREAVDYCKKNDIDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|123444262|ref|YP_001008230.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091223|emb|CAL14106.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 196

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 60/219 (27%), Gaps = 32/219 (14%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R  F+          A+++ L+  +       +  +         +          D  +
Sbjct: 4   RVVFIDDHDIVRSGFAQLLALEDDIQVVGEFSSAKQAR-----AGLPGLQANICICDISM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   DL++ +                 +   +  +              + S      
Sbjct: 59  PDESGLDLLKDLPS-----------GMGVIMLSMHDSPALVEMALERGARGFLSKRCKPE 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G  ++ +    +  +A                   LT RE E    ++
Sbjct: 108 DLVNAVRTVGSGGVYLMAEIAQNLARVAI----------------DPLTRREREVAVLLA 151

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +G    +IA  LG+S  TV+ + A++  K          
Sbjct: 152 QGMEVRDIAESLGLSPKTVHVHRANLFAKLGVSNNVELA 190


>gi|309790236|ref|ZP_07684806.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308227700|gb|EFO81358.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 65/227 (28%), Gaps = 20/227 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +   P   D L+ ++                + VG     L    L Q  + D I
Sbjct: 1   MRVVLIDDHPMFLDGLSSLLTAHGM-----------QVVGMGSNGLEAQHLAQTLRPDLI 49

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V            A       +  ++        V     +         + Y       
Sbjct: 50  VMDLHMPVCDGLEATRRITAEWPEVRIV---ILTVSADEEQLFAALQAGASGYLLKNLHA 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 L  L      I  +   +I     +      S   +  +   LT  + + L  +
Sbjct: 107 DDFFRLLDGLDQGAPPISPELAQKIDQALVH------SIANNTKEGAILTPLQRQILHLV 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G T  E+A  + +S +++  ++  I+ K     R+ AIAY  R  
Sbjct: 161 GHGLTYREVAAHIHMSESSIKYHMKQILTKLHLTNRTHAIAYVRRQG 207


>gi|300786261|ref|YP_003766552.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795775|gb|ADJ46150.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 63/217 (29%), Gaps = 15/217 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD--LFQEQKLDSIVSSDW 82
            +    D       L         +  + E  G +   LVR          LD  +    
Sbjct: 4   AVFLLDDHELVRTGLKTVFEPEPDIEVVGEA-GTAAEALVRIPQARPDVAVLDVRLPDGE 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              + R +  +                   +                Y         +  
Sbjct: 63  GVAVCREIRST----VDPPPACLM---LTSYSDDEALFGAIMAGAAGYMLKQVSGRSLIE 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +   G ++       +           ++      +  +L+ +E   L  ++EG T
Sbjct: 116 AVRTVAAGGSLLDATLTASVMNKL-----RGENVAAPDPRYEQLSPQERRVLDLVAEGLT 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +IA  L ++  TV NY++S++ K   + R+ A  Y
Sbjct: 171 NRQIAERLFLAEKTVKNYVSSVLHKLGVERRTSAAVY 207


>gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 256

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 72/229 (31%), Gaps = 17/229 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +             R   ++  + AS F L       E+             +       
Sbjct: 28  SETHHAVTIPDAVRRCRWISVDINASAFGLFFVSPSPERARLVPCFDSDYPGVAVATKFI 87

Query: 94  EKDKYYNVLQRPTELFCPVFHTLP---------------ENITPPAGMDNRYCSLTFDVA 138
                  +++       P +                   E + P A   +          
Sbjct: 88  SAANGEEIVRHTRNSTEPRWWADDGVAAMAEMFGKLAWTEQMAPLAPGTSGIALPVHADR 147

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWI 197
                ++ L  +   + +D L+EI                   G+   ++ RE+ECL   
Sbjct: 148 GQCGLVVFLGSE-IALPQDTLYEIHARCFSLFAAVARILPSDAGRTRAISKRELECLKLT 206

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 207 ANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|146281129|ref|YP_001171282.1| DNA-binding response regulator UhpA [Pseudomonas stutzeri A1501]
 gi|145569334|gb|ABP78440.1| DNA-binding response regulator UhpA [Pseudomonas stutzeri A1501]
 gi|327479283|gb|AEA82593.1| DNA-binding response regulator UhpA [Pseudomonas stutzeri DSM 4166]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  +  +           ++  ++              
Sbjct: 2   IRVMVAEDHTIVREGIKQLIGMARDMQVVGEAANGQQLLDQLRQVS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +            Q P  L   +               
Sbjct: 48  -CDVVLLDLSMPGVNGLEAIPRIRALS--------QPPAVLVLSMHDEAQMAARALKIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   + A +   L  +   GR I       +        +              L+
Sbjct: 99  AGYATKDSEPALLLTALRKVAGGGRYIDPALADRMVFEVGLTDSR--------PPHALLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      + +G + ++IA  L +S  T++ + A +M+K A  + +  + YA+ + +V
Sbjct: 151 EREYSVFERLVQGDSVNDIAGKLALSSKTISTHKARLMQKLAAHSVADLVRYAMEHKLV 209


>gi|50121017|ref|YP_050184.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611543|emb|CAG74991.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 66/240 (27%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ +++  +       +  +    D L+ +           ++ ++              
Sbjct: 4   QIRLMIADDHVIMREGLKQIFALDDSLSVVAEAGNGAQVLAQLRSVA------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       L+  +             R   L   ++             
Sbjct: 51  --PDLLLLDMSMPGISGEALISRVVAQ--------YPRLPILVLSMYSEAQIAQHALKSG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +   D   +   +  +    R I      ++        + +            L
Sbjct: 101 ARGYITKDKDPEALLAAIRRVAQGARYIDHTIAEQL------VFSHYTEGGRAEHD--VL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + +   ++G   + IA  L IS  TV+ + A +M K    T    + Y     ++
Sbjct: 153 TAREHQIMIMFAQGMGINTIANELAISNKTVSTHKARLMEKMQFSTNVEIVKYVFSKKLI 212


>gi|326800600|ref|YP_004318419.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551364|gb|ADZ79749.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ +  +     S ++H+ +       +            M ALT+ V           
Sbjct: 2   INVGIVDDHALIISGLAHMLSEQKDCQLIFTAGTAQEL---MEALTQQV----------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL   +                 +       +           
Sbjct: 48  -PHVLLLDIELPDVNGLDLCTLLQKQ--------FPSIRIIALTNHDEVVYIKKMMRNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   + ++    + I +    EI ++                   +LT
Sbjct: 99  QGYLLKGTDKNTLITAIKMVSQGQQFIDKQV--EIAVVNQTI------SGKRTTVAVKLT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I+   ++ EIA  L +S  TV ++  S+ +K   KT +G I  A    ++
Sbjct: 151 SREQEILALIANEYSNQEIADKLFLSIRTVESHRHSLNQKLNVKTMAGLIKEAYLRGLI 209


>gi|300785055|ref|YP_003765346.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794569|gb|ADJ44944.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 219

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 23/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E++               L  ++  D     T          G     LV+        L
Sbjct: 6   EEKVTIVVADDHTLFRQGLRELLSTDPEFDVTGEA-----AHGDEVITLVQRHRPNVLLL 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       ++  +  +        +   T    P       +          Y   +
Sbjct: 61  DVEMPGPGAKAVIERVRRTSP---DTAVVILTMHDAPALVRDLLDY-----GAAAYLVKS 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +                +L +      +S +    +   L+ RE+E L
Sbjct: 113 IARDELITAIRSVSRTRD----------NVLLSIPRATMESLERQQEQRTLLSDRELEVL 162

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++   ++ +IA  L IS  TV  ++ +I  K    +R  AI  A +  ++
Sbjct: 163 RLVAAAMSNAQIASRLFISEGTVKRHLTNIYGKLGAVSRVDAIKKAAKARLI 214


>gi|229494690|ref|ZP_04388448.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis
           SK121]
 gi|229318357|gb|EEN84220.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis
           SK121]
          Length = 204

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 39/241 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  ++    S ++ + +  D +  +   +                G    +   
Sbjct: 3   EPIKVLLADDENLIRSALAMMLSLEDDIVVVAEAES---------------GEDAVVAAA 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  ++     +  + +A +        +     +               + 
Sbjct: 48  KHQPDVAVLDLQMAGIDGIETAQQIAQT--------VSGCVSIIVTSHGRPGYLKKALSA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   T   A +   +  +   GR +      E                     D  
Sbjct: 100 GVRGFLPKTTPAATLAEVVRSVHAGGRYVDPSLAAE----------------AIGAGDSP 143

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L + ++G + ++IA    +S  T  NY++S + K     R  A   A R   
Sbjct: 144 LTPREADVLEYAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGW 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
 gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           R11]
          Length = 203

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVG------ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++  D        +    E  G      A+     +  +  +   D I+       +  
Sbjct: 2   RVLIADDHDLLRDTLVMFLESEGGMSTCAANSLPAAQERMETDGPFDLILLDYNMPGMDG 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L +        +           +              +   T     +   +  + 
Sbjct: 62  LQGLFDTMAMNGGQRVALISGQ---ASREVAEQALDAGAAGFVPKTLPAKSMINAVRFMA 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +    D +  +              D        L+ RE+E L  +SEGK + EIA 
Sbjct: 119 MGEQYAPIDFMTAVE-------------DTPCPLTSTLSPREIEMLRGLSEGKANKEIAR 165

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I+  TV  ++ S+ RK     R+ A   A    +
Sbjct: 166 DLNIAEPTVKLHMKSLYRKMKVSNRTQAALVARDKGL 202


>gi|170746767|ref|YP_001753027.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653289|gb|ACB22344.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 221

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 64/231 (27%), Gaps = 22/231 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R   V       +   R++     +             GA  +   R        +D
Sbjct: 4   RRIRVMLVDDHAVVREGYRRLLERQPDMEVAAEAR-----DGAEAYRTYRAAEPDVVIMD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      D +R +            +                +         Y + + 
Sbjct: 59  ISMPGRGGIDAIRQIRQ-----VDPDARILVFSVHAAV---SYALQAIRAGARGYITKSS 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +F     +  +    +       A+  +           L+ RE E L 
Sbjct: 111 ASELLIDAVRSVFNNKLTLCAEISHLLA------ASRLEEQPSPID---LLSPREFEILR 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I + + +D IAV L +S  TV NY  +I  K    +    + Y +R  ++
Sbjct: 162 MILDARHTDAIAVDLSLSPKTVANYHYAIKSKLGVSSDVELVYYCIRCGLI 212


>gi|149927663|ref|ZP_01915916.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149823717|gb|EDM82945.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 236

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 19/231 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDW 82
           S +    D  A        +     +  + E   A   F L++        LD  +    
Sbjct: 5   SRIILVDDHAAVRAGYKRFIDSESDLIVVGEAGNADQAFALLKTQACDALVLDISMPGQS 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +L++ + +           +   +   +  +              Y + + +   +  
Sbjct: 65  GLELIKRVRMKW--------PKLALVVLSMHDSPVVATKALEQGARAYVTKSSEPEELIQ 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---------YDVHWGKDFELTGREVEC 193
           G+ +   +   +  D     G+L        +           D        LT REV+ 
Sbjct: 117 GIRMALGEQTFVSSDV-QSQGMLTGSLQQQGQENLQLPSCETQDSAATTACGLTPREVDV 175

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +  + EG T +++AV LGIS  TV+N ++ I +K   +T      +A    
Sbjct: 176 VRLLVEGHTIEQVAVSLGISGKTVSNNLSQIRQKLGVQTDFELAFWAWSQG 226


>gi|159901708|ref|YP_001547954.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894747|gb|ABX07826.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 225

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 62/216 (28%), Gaps = 14/216 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++  D          A+ E+       G +             + D  +      +   
Sbjct: 2   RIVLADDHTMVRQGFRAILEHHLVCTIIGEATTGTEAMTSITHLQPDVALVDLMLPEATG 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                        +          +  L           + Y     D   +   +  + 
Sbjct: 62  IAVTRHVKATTPHVAILIVSM---YGDLGYVDAAMQAGASGYVLKEADAMELVTAVQAVA 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              RI+         + +    N              LT RE +      +G TS +IA 
Sbjct: 119 AGRRILSSHLEGYWHMPSFRPNNTI-----PIDPYDLLTSRERDVFAGAMQGNTSVQIAA 173

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L +S  TV  Y AS++RK   +T++  I +AVR  
Sbjct: 174 HLCLSVRTVEAYRASMLRKLGLRTQTDLICFAVRTG 209


>gi|71905906|ref|YP_283493.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71845527|gb|AAZ45023.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 221

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 58/222 (26%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSSDWP 83
           L    D       L   +        + E       L  L     F    LD  +     
Sbjct: 4   LLVVEDHALVREGLVRLLGQIEAGAKVLESADFESALNVLENEGEFDLVLLDLALPGIDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  +        Y  +          F   P          + +    F    +   
Sbjct: 64  FAGLDILRR-----RYPAMPVAVVS---AFDDTPTITRVLNLGASGFIPKAFSGEALLSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                 L           +     +  LT R+ + L  +  G ++
Sbjct: 116 VREVLAGNIFRP--NGQSAARLDDATPVPPPPKNGVRPDEIGLTDRQGQVLALMVRGLSN 173

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  LG+S  TV  +  ++ +     +R+ A+    R  I
Sbjct: 174 RDIADQLGLSEGTVKIHATAVFKALGVSSRTQALVAVARYGI 215


>gi|332667758|ref|YP_004450546.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336572|gb|AEE53673.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            NI++  +    T  +  +      +               +                  
Sbjct: 2   TNILVIDDHPLVTDGIKTMLAAHAEIVVAASAKTAKDALALLEQT--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +       L   +  +         ++   +     +             
Sbjct: 47  FFDIILLDISLPDGDGLTLCAEIRQTN--------KQSKIIGLSSANETGIITQFLQRGG 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y     +   +   +  +      + +                +++ DV   +   LT
Sbjct: 99  NGYLLKNMERQELIEAIEQVQMGKIYLCKGAN-------EKILEQYRNIDVATQQVPVLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++EG T  +IA  L +S  TV  +  ++M+K         +  A +N ++
Sbjct: 152 RRETEILQLLNEGLTGPQIAKQLFLSPLTVETHRKNLMQKFNANNAQMLLKLARQNRLI 210


>gi|94264892|ref|ZP_01288666.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
 gi|93454662|gb|EAT04930.1| regulatory protein, LuxR:Response regulator receiver [delta
           proteobacterium MLMS-1]
          Length = 227

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 16/238 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +          V   P     L  ++  +  +    +       +      L        
Sbjct: 1   MTDRHLTTILVVDDHPLLLSGLGMLLNAEEDLEVVGQTDRAESAL-----TLAGELEPDI 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +S     DL+  +          +  +   +   +                 + 
Sbjct: 56  ILLDITLSDTSGIDLLPRLLE--------ITPQSQVIMLTMHENQRYLQLAMQAGARGFV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---FELTG 188
                 A +   +  ++     +    L E       QA   ++      +      L+ 
Sbjct: 108 LKKGLDADLLYAVRTVYRGEVYVHPSMLLEFVGGDGGQAKHRENQQAGDHQSQLWHSLSQ 167

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + +  +++G TS EIA    +S  TV  Y +  M K     ++  +   +   ++
Sbjct: 168 REQQVMLAVAQGHTSREIAARYFVSDKTVTTYRSRAMTKLGLGNKAELVKMIMDLGLL 225


>gi|332669837|ref|YP_004452845.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332338875|gb|AEE45458.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 222

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 46/188 (24%), Gaps = 8/188 (4%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +V         +D  +         R +             R   L    F   
Sbjct: 39  GQQGVDVVVRTAPDVVLMDVRMPRMDGLAAHRRLRDLGS--------RARVLVLTTFDAD 90

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         +         +   +  +     ++      ++           +  
Sbjct: 91  DLVLAALRQGAAGFLLKDTPPPDLVAAVRRVALGEPMLSPSVTSQLIAAVTAAPVPDRPR 150

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E    +  G ++ EIA  L +   TV  ++ +++ K     R   
Sbjct: 151 ERARALLATLTEREREVAEAVGAGMSNAEIARTLHLGVATVKTHVGNVLAKLDATNRVQI 210

Query: 237 IAYAVRNN 244
             +     
Sbjct: 211 ARWVHEAG 218


>gi|108798049|ref|YP_638246.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. MCS]
 gi|119867144|ref|YP_937096.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. KMS]
 gi|126433709|ref|YP_001069400.1| two component LuxR family transcriptional regulator [Mycobacterium
           sp. JLS]
 gi|108768468|gb|ABG07190.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. MCS]
 gi|119693233|gb|ABL90306.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. KMS]
 gi|126233509|gb|ABN96909.1| two component transcriptional regulator, LuxR family [Mycobacterium
           sp. JLS]
          Length = 228

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 30/238 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V + L  + E     +  + +    L  +           R+ AL             
Sbjct: 12  PPVTVFLVDDHEVVRRGLIDVLSAEPDLEVIGEAGSVSEALARIPAL------------- 58

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q   LD  +      +L R +     D           L    F +    I     
Sbjct: 59  --QPQVAVLDVRLPDGNGIELCRDLLSRLPDLRC--------LMLTSFTSDEAMIDAILA 108

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y         +   +  +     ++       +           +    H      
Sbjct: 109 GASGYVIKDIKGMELAKAIREIGAGRSLLDNRAAAAL-------MAKLRRATEHSDPLSG 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ +E   L  + EG T+ +IA  + +S  TV NY++ ++ K   + R+ A  +  R 
Sbjct: 162 LSDQERVLLGLLGEGLTNKQIAARMFLSEKTVKNYVSRLLAKLGVERRTQAAVFVSRL 219


>gi|119899260|ref|YP_934473.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119671673|emb|CAL95586.1| probable two-component response regulator [Azoarcus sp. BH72]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 64/223 (28%), Gaps = 19/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   A   +  V         +D  +     
Sbjct: 3   RILLLDDHAVVRTGYRRLIDAEPGLQVVAEAATADEAYACVVGGGIDVAVVDLSLRGASG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R M           L+           +              Y +   +   +   
Sbjct: 63  IEAIRRMLA-----RDPGLRVLVLSM---HDSPGYATQAMRAGALGYLTKNSEPDEMLDA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++  +    +   A     +             LT RE E L   + G+ +
Sbjct: 115 IRAVAAGRRVLSAEIAQALAGAALDGEQLL----------TRLTPREFEVLRMAASGEPA 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  + +S+ TV N++++I +K         +  A R+ +V
Sbjct: 165 ACIADRMHLSQKTVLNHLSAIRQKLDADNDFKLLRLAARHGLV 207


>gi|319793244|ref|YP_004154884.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315595707|gb|ADU36773.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 229

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 73/237 (30%), Gaps = 22/237 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           + + V       + +AR+I  D +++         + +       +  +  +   +D  +
Sbjct: 5   QVALVEDDTGVRERIARVIGADPSLALAYSASNAVDMLRW-----LGENPVEVLLVDLGL 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  ++R     +             +   +F      +       + Y       A
Sbjct: 60  PDLPGLQVIRRCRSMQ--------PACAVMVLSIFGDEANMVLAFEAGASGYLLKDGTEA 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEI----GLLAAYQANMFKSYDVHWGKDFE-----LTGR 189
            +   +  L   G  +      ++       A        S      +        L+ R
Sbjct: 112 DLATHIRNLRAGGSPMSPVIARQLLRRWQTRADASQPAPASPGASAARFSTVAPERLSPR 171

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  +S G T  E+   +G+S +TV ++I +I  K     +S A+  A     +
Sbjct: 172 ESEVLGLVSRGFTYVEVGAQMGVSASTVQSHIRNIYGKLDVHNKSEAVFEARNLGWL 228


>gi|303238559|ref|ZP_07325093.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302593957|gb|EFL63671.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 221

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 11/229 (4%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             +  +    D+      +   +  +  +  +     G   F      +     +D  + 
Sbjct: 1   MGMIKVLVVDDVAILRNSIKIMLQVSSEIEVVGTASNGREAFEKCSELIPDIVLMDLRMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +    +        Y  ++         F    +         + Y     +   
Sbjct: 61  GVDGVEGTELIKEK-----YPQIKVM---ILTTFKEEEDIQAAIGSGADGYILKDIEPDE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWI 197
           +   +   +     + +D    I   +       +S    +  +    L+ ++VE +  +
Sbjct: 113 LIAAIKNAYKGFYTVHKDVFDSITRKSKKSEPETQSVQSLFDNNGKPLLSVQDVEIIRHL 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GK+  +I+ I+ IS   + N I+ I+RK     R     +A++N I+
Sbjct: 173 VNGKSYKDISKIMFISEGHIRNQISKILRKLDLTDRMQLSLFAIKNKIL 221


>gi|53804885|ref|YP_113279.1| LuxR family DNA binding response regulator [Methylococcus
           capsulatus str. Bath]
 gi|53758646|gb|AAU92937.1| DNA binding response regulator, LuxR family [Methylococcus
           capsulatus str. Bath]
          Length = 215

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 30/240 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ ++L  +     +    L + +  +  +   +                G     L  
Sbjct: 3   SKITVMLVDDHAVVRAGYRLLLSGTPNIEVVGEAER---------------GEEACQLYA 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +        +R +   +             L   +   L   +     
Sbjct: 48  DTRPDVIVMDLSLPGIGGLASIRRIRSRDTS--------ARILVFSIHDELIYVVRALEA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y + +     +   +  +      +  +    + +                     
Sbjct: 100 GARGYITKSCAPEILVEAVARIASGESFLEPEIAQRLAM-------QTLGGAEATTALNT 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    +++G T+ E+A  L +   TV NY   I  K    T +     A +N I
Sbjct: 153 LSAREFDVFLLLAKGYTTREVAEELRLGYKTVANYSTLIKSKLGVNTTAEMARLAYQNGI 212


>gi|307941458|ref|ZP_07656813.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
 gi|307775066|gb|EFO34272.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
          Length = 228

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
             V+  +       +          A +         T  +    E              
Sbjct: 7   RFVIADDHPLFRGALKQTLEALFQGAEIQEAGALEDVTKGLDENGEA------------- 53

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-PAGMD 127
                LD  +     F  +  +          V+              P+ I        
Sbjct: 54  -DLVLLDLTMPGMRGFSGLMYLRAQHASV--PVVIVSAN-------EDPQVIRRCMEFGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +  +  IR  +  +         +           +            +   LT
Sbjct: 104 SGFIPKSHGIDVIRDAISAVMAGDLWTPPEI----------ELAEDDGVGDLVKRLSTLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A R
Sbjct: 154 PQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208


>gi|50119067|ref|YP_048234.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609593|emb|CAG73026.1| quorum-sensing transcriptional regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 62/196 (31%), Gaps = 24/196 (12%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
             I+ S +P + V     ++      V+        P        I     +        
Sbjct: 43  QMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFDLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLL----FPKGRIILRDRLWEI-GLLAAYQANMFKSY- 176
                N Y  +  D       L ++    +P       +   +I  +L         S  
Sbjct: 103 KYDIINGYTFVLHDHGDNLAMLSIIVDNSYPDDVETFIEERKDIFQMLLIEAYEKIISLC 162

Query: 177 ------DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                           + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 163 KEMIGNKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|229178244|ref|ZP_04305615.1| Response regulator [Bacillus cereus 172560W]
 gi|228605374|gb|EEK62824.1| Response regulator [Bacillus cereus 172560W]
          Length = 212

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVILDKIKSNLMENKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|227328500|ref|ZP_03832524.1| two-component response regulator [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +    D L+ +           ++ ++T             
Sbjct: 4   PIRLMIADDHVIMREGLKQIFALDDSLSVVAEAGNGAQVLAQLRSVT------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       L+  +             R   L   ++             
Sbjct: 51  --PDLLLLDMSMPGISGEALISRVVAQ--------YPRLPILVLSMYSEAQIAQHALKSG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +   D   +   +  +    R I      ++        + +            L
Sbjct: 101 ARGYITKDKDPEALLAAIRRVAQGARYIDHTIAEQL------VFSNYAEGGRAEHD--VL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + +   ++G   + IA  L IS  TV+ + A +M K    T    + Y V   ++
Sbjct: 153 TAREHQIMIMFAQGMGINAIANELAISNKTVSTHKARLMEKMQFSTNVEIVKYVVSKKLI 212


>gi|170723949|ref|YP_001751637.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169761952|gb|ACA75268.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 209

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 64/239 (26%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  +  +            +                  
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDMQVVGEAGNGEQLLETLR---------------HT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   +               
Sbjct: 47  PCEVVLLDISMPGVSGLEAIARIRALHNPP--------AILMLSMHDEAQMAARALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I       +                       L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAGGGRYIDPALADRMVFEVGLTETRPLH--------TLLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + +V
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLKVNSLAELVKYAMEHKLV 209


>gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 210

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 62/222 (27%), Gaps = 19/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +        + E   A   + +          D ++      
Sbjct: 6   RLLLADDHPVVRAGLRAVLDTEPDFEVVAEAATAERAVALAA----TGGFDVVLMDLQFG 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +  +          R        + +  + +T        Y         +   +
Sbjct: 62  SGMHGVEATAAITAAPDAPRVL--ILTTYESDADILTAVEAGAGGYLLKDAPPQELAAAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +       +              D        LT RE+E L  + EG ++ 
Sbjct: 120 RTAAAGRSALAPAVAHRL-------------MDRMRTPAQALTKRELEVLQLVGEGLSNQ 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 167 QISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208


>gi|329924693|ref|ZP_08279708.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
 gi|328940527|gb|EGG36849.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 26/235 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  ++      +  +    D    +  ++                G         
Sbjct: 2   KIKVIIADDNSFIREGMKIILATFDEFDVVATVED---------------GQEAVAFCEA 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +    +  + +    K K          L    F             
Sbjct: 47  HEVDVALMDVRMPNLNGVEATKQLTERTKTKT---------LILTTFDDDEHITDAILNG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184
              Y     D  RIR  +  ++    ++    L +I  GL         K    +     
Sbjct: 98  AKGYLLKNNDPERIRDAIKTVYHGHHVLQDVVLDKIKSGLSPGKPDKTDKEDKANKFDRS 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             T RE++ +  I++G  + EI+  L IS  T+ N+I S++ KT  + R+    +
Sbjct: 158 LFTERELDIMALIAKGLANKEISKKLFISEGTIANHITSVLSKTGLEHRTQIAIF 212


>gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 238

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 18/235 (7%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            DL+ ++            +  +         + +             +           
Sbjct: 3   HDLIEQIEGCWADGGLEELLELVCRSYDLFSVIYICPSFIGFSLSAPFIVQPPCRGWADQ 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP-----------PAGMDNRYCSLTFDVA 138
             +        +++  +    P+        +               +           +
Sbjct: 63  QKIQSLLSTDPMVRAMSRTVLPMDWAALRQKSAHETGIHFLPGEDGALRQGLTIPVRGPS 122

Query: 139 RIRIGLMLLFPKGRII-----LRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREV 191
               GL +       I       + + ++  +A Y                   +T RE+
Sbjct: 123 NSVWGLFIATSNESEICWASRRHELMIDLAHIAHYVHKRACDIHGEGHTIDLSTITRREI 182

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++GK   EIA+++ IS +TV  ++ S   K     R  A A A+R  ++
Sbjct: 183 EALALVAQGKKPGEIAMLMRISNDTVKAHLDSARDKLQALNRVHAAAKALRAGLI 237


>gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides
           2.4.1]
          Length = 238

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   +     +  +      +G   + L        + + +   + WP +       +  
Sbjct: 14  ISRAESRNELSQALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTWPCEQDGASDPASA 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPP----------AGMDNRYCSLTFDVARIRIGLM 145
                +L        P+        +                        D       + 
Sbjct: 74  RIRDPLLDYAVTGIKPLIWRSGSWKSLRKDRYFPCPHSFEARAGLIVPLPDRRGRIGAIT 133

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWIS 198
           +L  +      +      ++A        S                +L+ R++E L WI+
Sbjct: 134 MLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAGLAKLSPRQIEILDWIA 193

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+
Sbjct: 194 HGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232


>gi|317132102|ref|YP_004091416.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470081|gb|ADU26685.1| two component transcriptional regulator, LuxR family
           [Ethanoligenens harbinense YUAN-3]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 21/214 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D L  ++ L+  ++ T          G     +          +D  
Sbjct: 2   IQVLIADDQTLMRDGLKTILELEPDIAVTGLA-----ADGEEACAICDTRKPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 L    F      +         Y     + 
Sbjct: 57  MPVMDGVAATAAIKKRHPSI--------AVLVLTTFDDDESIVQALKNGAIGYLLKDIEA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-KSYDVHWGKDFELTGREVECLTW 196
            R+   +                   +LAA        +     G+   LTGRE +    
Sbjct: 109 DRLIQTVRDAAQGQFTWP-------AMLAAKLTKHLCANVPALSGRLAALTGRERDVANL 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           ++ G T+  IA +L +S  TV N+++SI  K   
Sbjct: 162 LAGGYTNRRIAQMLYLSEGTVKNHVSSIYSKLGI 195


>gi|194445553|ref|YP_002040645.1| hypothetical protein SNSL254_A1504 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404216|gb|ACF64438.1| EsrB [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
          Length = 212

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 54/190 (28%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G   +            LD  +      D++  +          V           +   
Sbjct: 38  GLEVYNACCAYEPDILILDLSLPGINGLDIIPQLHQRWSAMNILVY--------TAYQQE 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I   A   N Y   +     +   L  +    R I      E  L            
Sbjct: 90  YMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAIL---------AEL 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE + L  I EG T+  I+  L IS  TV  +  ++MRK      +  
Sbjct: 141 NADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 200

Query: 237 IAYAVRNNIV 246
           +  A R  ++
Sbjct: 201 LNCARRMRLI 210


>gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 244

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 5/186 (2%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
             + +             IV      D +   A+ +  K      R   L          
Sbjct: 39  EEYSVSSDWPRDLAGPHLIVLDTGKGDQLDLQAMFKGYKASYPQARLVILAESF--EFEG 96

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +   A   + Y         +   L L+    +++          L        +    
Sbjct: 97  VMRAFAAGADGYIVKEIGCQSLMESLRLIALGEKVMPSALA---QFLPETMERRTRPARP 153

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE+E    +  G+ +  IA  LGI+  TV  ++ +I+RK   K R+ A+A
Sbjct: 154 GPDLAGTLSEREIETFRRMCRGEPNKVIAQNLGITEATVKVHVKAILRKLHLKNRTQAVA 213

Query: 239 YAVRNN 244
           +A+   
Sbjct: 214 WALGEG 219


>gi|86140782|ref|ZP_01059341.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
 gi|85832724|gb|EAQ51173.1| hypothetical protein MED217_16560 [Leeuwenhoekiella blandensis
           MED217]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 21/226 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V      S+ +A ++                E++          +   + + D ++ 
Sbjct: 4   VAIVDDHTLLSEAIAGLVRQFSNFEVVNVAQNGQEFINF-------VEANPDNRPDIVLM 56

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +    A +   K+Y  ++        +       +         Y         
Sbjct: 57  DVKMPVMGGIEATTFLQKHYPEIKVL---ALSIEEEEGVVLQMIRAGAKGYLLKDTRKNI 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + + L  +  +G          +              +    ++  L  RE+E +     
Sbjct: 114 LELALNEVMTQGFYYTNTVERIVN-----------KTESKTEEEIVLKEREIEFIKHACT 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             T  +IA  + +S  TV  Y  ++ +K   K R+G + YA++NNI
Sbjct: 163 EMTYKQIAEKMFLSPKTVEGYREAVFQKLGLKNRTGLVIYAIKNNI 208


>gi|329944915|ref|ZP_08292942.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529726|gb|EGF56622.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 244

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 63/257 (24%), Gaps = 41/257 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  ++   T  ++ L      +  +                    G         D
Sbjct: 2   IRLGLADDEPLFTMGLAMLLGAQPDMEVVWRAVD---------------GNDALTHNAAD 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +                 +    F T    +       
Sbjct: 47  PVDVLLLDVQMPGLDGLAATRELMARGTT--------GKVVILTTFDTDGYVMGAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             +         +   +  +     +I       +                  G+     
Sbjct: 99  AGFLLKNTPPQDLITAIRTVHDGDSVISPGPTRRLLAAVRTGQVSGTRAGDGAGRHASED 158

Query: 186 ----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                           LT RE E L  I+ G T+ EI     +S  TV  +++ ++ KT 
Sbjct: 159 SVEAVRAAEASRQVAALTQREREILALIALGLTNQEICDREWLSMPTVKTHVSHLLSKTG 218

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R   +  A+R  +V
Sbjct: 219 CRDRVQLVLLALRGGVV 235


>gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
 gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321]
          Length = 199

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++ L           A     G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTL--QPDVESVFQA---KNGQEAIQLLEKESVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +     +    V+          F              + Y     ++A + 
Sbjct: 60  TGLEVLEWIRAENLETKVVVV--------TTFKRPGYFERAVKVGVDAYVLKERNIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V       LT +E+  L  I++G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGIAQGF 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|300741965|ref|ZP_07071986.1| two-component system response regulator TcsR2 [Rothia dentocariosa
           M567]
 gi|300381150|gb|EFJ77712.1| two-component system response regulator TcsR2 [Rothia dentocariosa
           M567]
          Length = 210

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 22/227 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
                     + LA ++ L+  +    ++       G      +         LD  +  
Sbjct: 5   MLADDQQLVREALAALLGLEHDIEVVAQVGG-----GDEVIPAIHRYHPDVVLLDIEMPG 59

Query: 81  DWPFDLVRCMAL-SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +   A   +        +    L    F          A   + +       ++
Sbjct: 60  SELSSGIDVAAAIRDAKLVTLTGEPVRSLIVTTFGRPGYLRRALAAGASGFMVKDTSASQ 119

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +  G+  +     ++      E                     +  LT RE E L     
Sbjct: 120 LAEGIRRVHAGMHVVDPALAAE----------------SLAYGESPLTERETEILRVAGH 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+  I   L +S  TV N+++S M K     R  AI  A  N  +
Sbjct: 164 GATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210


>gi|295134891|ref|YP_003585567.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Zunongwangia profunda SM-A87]
 gi|294982906|gb|ADF53371.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Zunongwangia profunda SM-A87]
          Length = 207

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 35/239 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + IVL  +    T  +  +    D L  +       +                    
Sbjct: 1   MKAIKIVLVDDHSLFTEGLMQILDAIDDLQVIATFRDGETMLKS---------------D 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +  +    +   M                 +   +            
Sbjct: 46  EIHKADVLLLDINLPGNSGISIAEKMK--------PYFASLKIICLSMLFEKNILDKLKF 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +         +                 S    W  DF
Sbjct: 98  IGVAGYLPKFVHTNELIEAIRKVRIGETAFYEE------------HTKAVSNIKIWTSDF 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT RE+E L  I +GK++ EI+ IL  S+ T+  +  +++RK   K  SG + +A++N
Sbjct: 146 KLTNRELEILQLIKDGKSTKEISEILHRSQFTIETHRKNMIRKLNLKNSSGLLHFAMKN 204


>gi|194291672|ref|YP_002007579.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225576|emb|CAQ71522.1| putative response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 213

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDS 76
           QR++ ++ +    D       L    S  + +  + E   G +   +VR  L     LD 
Sbjct: 2   QRSTSLTTILIVDDHPPVRAVLKTHFSQVLGITHVLEADNGQAAIEIVRQYLPDVVILDL 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D++  +  S        ++             P          + + S T +
Sbjct: 62  DIPKINGLDVIPRLKASH-----PAVRILVISGQDQNAFAPRAR---HAGAHGFVSKTQE 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +A I      +     ++      + GL                 +   L+ +E+  +  
Sbjct: 114 LAEIVRCTESVLAGYTVMPEIDHGKSGL------------ADEAERLASLSDKELVVMQM 161

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++G ++ EI  +L IS  TV+ +   +M K   K+    I +A R++I
Sbjct: 162 LAKGMSNKEIGQVLFISNKTVSTHKTRVMEKLGAKSIVDVIDFARRHHI 210


>gi|218129935|ref|ZP_03458739.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
 gi|217988045|gb|EEC54370.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 79/244 (32%), Gaps = 32/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + + I+L  + +     +  +   S  L  +  +    S    +  +      + FL
Sbjct: 1   MKEKDIRILLVDDHDLVLQGLKRIVECS--LPEIKTVCTASSGREALLLIASQC-FNLFL 57

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L           D  +      +++  +            +            +   I  
Sbjct: 58  L-----------DMELPDLSGLEIISRIREK-----DPQARIIVNTMHEEIWFIKNLIQC 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                +     + D  +I   +  +   G              A    N  +  D   G+
Sbjct: 102 D---VDSILFKSVDSNKIVEAIRCVLDGGTY--------YCTYAEQVRNQMRRSDE--GR 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE++ L  ISEGK + EIA  L +S NTV+ +   ++ K   K  +  I  A+ 
Sbjct: 149 REELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVADLIMTAIS 208

Query: 243 NNIV 246
             I+
Sbjct: 209 RGII 212


>gi|110804545|ref|YP_688065.1| transcriptional regulator FimZ [Shigella flexneri 5 str. 8401]
 gi|110614093|gb|ABF02760.1| fimbrial Z protein [Shigella flexneri 5 str. 8401]
          Length = 226

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 32/236 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 22  MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 66

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +      VL   ++                 
Sbjct: 67  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVK--VLFLLSKS------ECFYAGRAIQ 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 119 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I  A
Sbjct: 170 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIRLA 225


>gi|332706485|ref|ZP_08426546.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354369|gb|EGJ33848.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 230

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 80/232 (34%), Gaps = 18/232 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D L   + +   +  +     +T   G     ++          D  +     ++
Sbjct: 5   ILVADDDLGTRLSVSDYLEMSGY-SVITAENGQQALSMIETYHPHLLVTDINMPRIDGYE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LVR +           L+    +F    ++  + I       + Y    F++  +   + 
Sbjct: 64  LVRKVRQK------PPLRLLPVVFLTELNSTNQRIKGYQSGCDVYLPKPFEMEELGAVIQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----------LTGREVECL 194
            L  + ++I  +  +                      + +           LT RE + L
Sbjct: 118 SLLVRSQVIHTELRFPPQTTKEPVDKPASRSINSVDINHQSENNTQAYALQLTEREQQVL 177

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G ++ EI   L  S  T+  +++S+ RKT T  R+  + +A+ ++++
Sbjct: 178 NLLATGLSNVEIGNQLYRSPRTIEKHVSSLFRKTDTSNRAELLRFALEHHLI 229


>gi|330972050|gb|EGH72116.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L         +               L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADMPGYTILGETADGAQLAGLAQQL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  + S    D +  +          V      L   + +     +        
Sbjct: 49  PDIILFDICMKSVDGLDALEQLLK--------VQPHCKVLILSMQNDPDMIMRALDIGAQ 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A +   L  L    R +       +   A       ++        + LT 
Sbjct: 101 GYLLKDTTAAELEQALGALRGNERYLSPAIAHTVIERALRGKRSDRARSAKER--YHLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRERII 216


>gi|329948209|ref|ZP_08295081.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328522942|gb|EGF50047.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 224

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 31/231 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +D      +    +  + +               ++ +               
Sbjct: 17  LRVAIVDDDPFVLHALRAYLSSDERIEVASTFSRAADALAFLHKI--------------- 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L+  +             R   +    F      +   A   
Sbjct: 62  RVDVLLTDVRMPEMDGLELLTRVRRQW--------PRTAVVVLTSFDDDEAMVAALAQHA 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N +         I   ++     G  I       +           +        D   T
Sbjct: 114 NGFLLKDASPEEIIRAVIAASAGGTTISPAATSRL------VTRHLRPPQTAQAPDV--T 165

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             E   LT + EG ++ EIA  L I+ +TV  +++ +M+K    +R   + 
Sbjct: 166 EAEQAVLTLLCEGYSNAEIAEQLVIAESTVKTHVSHLMKKYDVPSRLKLVV 216


>gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
 gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185]
          Length = 253

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 21/226 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-----LFQEQKLDSIV 78
            H    S    R+  +D        +  + E        +   D        E  +D  +
Sbjct: 27  PHGVMTSASPIRLAVIDDYEVVVNGLAKMLERY-RDRVEVAELDIEGPMSTVEHPVDIAL 85

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
              +        AL+   K    + +           L             Y S T    
Sbjct: 86  YDTFGQAQGEPEALAHLLKE-PRVDKVVVYTWNFQPDL--VRRSLDAGVRGYLSKTLPAG 142

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +     I+  +     G +A              G++  LT RE E L  I+
Sbjct: 143 ELVSALERVHAGEVIVSAEV--GSGPIAGEW----------PGREEGLTPREAEVLALIT 190

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +G ++++IA    +S N+V +YI +  RK    +RS A+ + VR+ 
Sbjct: 191 QGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRSQAVLWGVRHG 236


>gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 217

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D+  +  GL  +      + RD L  +    A   +     D     + ELT 
Sbjct: 103 GLFYFEDDLDNVLRGLKGVLNGKNWLSRDVLNRLVAYLANLNHTVTELDTQL--EIELTR 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + LT + +G ++ +IA  L +S +TV +++ SI RK   K R  AIA+A RN
Sbjct: 161 RETQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKRN 215


>gi|74318255|ref|YP_315995.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057750|gb|AAZ98190.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 211

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            + + V            ++  D  +       +     G      +R        LD  
Sbjct: 2   IQVAIVDDHQIVRTGFRELLGDDSAIRI-----SFEAADGDEALAQLRTAPCDVLLLDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++R +           ++       P        +       N Y     + 
Sbjct: 57  LPGKSGVDVLRTIRQRH-----PDVKVLILSGFP---EESYALAMIKNGANGYLCKDCEQ 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R +         LLA   +   +           L+ RE++    +
Sbjct: 109 EDLLRAIHTVSNGRRYVS---ARTAELLAEEMSGERRGVLHEA-----LSDRELQVFLRL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G++  +IA  L +S  T++ Y + +  K    + +    YA+R+ ++
Sbjct: 161 ARGESVSDIASQLHLSVKTISTYRSRVTEKLNVASNAELATYALRHGLI 209


>gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 238

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   +     +  +      +G   + L        + + +   + WP +       +  
Sbjct: 14  ISRAESRNELSQALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTWPCEQDGASDPASA 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPP----------AGMDNRYCSLTFDVARIRIGLM 145
                +L        P+        +                        D       + 
Sbjct: 74  RIRDPLLDYAVTGIKPLIWRSGSWKSLRKYRYFPCLHSFEARAGLIVPLPDRRGRVGAIT 133

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-------FELTGREVECLTWIS 198
           +L  +      +      ++A        S                +L+ R++E L WI+
Sbjct: 134 MLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAGLAKLSPRQIEILDWIA 193

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            GK++ EIA+ILG+SR  V  +++ I++K    +R+ A+
Sbjct: 194 HGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232


>gi|315127425|ref|YP_004069428.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas sp. SM9913]
 gi|315015939|gb|ADT69277.1| regulator in two-component regulatory system; LuxR
           [Pseudoalteromonas sp. SM9913]
          Length = 216

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 17/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMY-------ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +++ +  D    +   +        A  E   ++ F      L +++ LD ++       
Sbjct: 1   MSQFLIADDHPLFREALKGALSAKFAGLEVFESADFDSTLKVLSEQEDLDILLLDLHMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                 L    + Y  L             +             +   +     I   + 
Sbjct: 61  NGDLYGLIRIREDYPSLPIAVVSG---SEDVNIVSKVMGYGAMGFIPKSSSSDDIANAIN 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      +  +   ++  +      +             LT ++   L ++ EG  + +
Sbjct: 118 QILEGDTWLPTELKSKVAEIEGEDREIAAQVAS-------LTPQQYRVLQYLHEGLLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 171 IAYELHISEATVKAHITAIFRKLGVYNRTQAVLIAAKLQL 210


>gi|298487656|ref|ZP_07005697.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157748|gb|EFH98827.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 220

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVAEMPGYAIIGETADGAQLSSLAQRL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    + +  +          V      L   +       +        
Sbjct: 49  PDIILLDIWMKSVDGLEALEQLFK--------VQPHCKVLILSMHTDPDMIMRALDIGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +   A       ++        + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNNERYLSPAIAHTVIERALRGTRSDRAQATKER--YHLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIAV LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 216


>gi|124008987|ref|ZP_01693672.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
 gi|123985413|gb|EAY25321.1| DNA-binding response regulator, LuxR family, putative [Microscilla
           marina ATCC 23134]
          Length = 222

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 69/180 (38%), Gaps = 13/180 (7%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +  Q   LD  ++     +L+  +  +  D  Y ++    +     +             
Sbjct: 48  EPPQVVLLDLKMTDMEGTELIEKLKATHPDMKYILMSSYYKKTFTGY--------ALKTG 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            N           +   + L+  KG   + +++  +           +    ++  + E 
Sbjct: 100 ANALVPKEISPEYLLKVIALVHTKGYYFMEEQIEVL-----RSQIKPRPPRPNFINEGEF 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  + E  T+ EIA  L ISR TV  +  ++  KT  +  +G + YA++N +V
Sbjct: 155 TDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGARNLAGLVIYALQNQLV 214


>gi|251782925|ref|YP_002997228.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391555|dbj|BAH82014.1| two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 198

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 72/225 (32%), Gaps = 31/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++ ++ +V     +       G     L++        LD  +   
Sbjct: 5   IAEDQVMLRDALKQLLLMEESVESVEAVGN-----GKEAQALLQKKAVDVVILDVEMPEM 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +                 +    F  +           + Y      ++ + 
Sbjct: 60  NGLEVLEWLKRRSN---------TKVIIVTTFKRIGYFQRAVKAGVDAYVLKERSISELM 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G+    + +  + +                     LT +E+  L  I++GK
Sbjct: 111 KTIHTVLEGGKEYSPELMENLFV-----------------NPNPLTQQEMTILRLINQGK 153

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TS EI+ +L +S  T+ NY +SI  K     R  AI  A +N  +
Sbjct: 154 TSKEISQLLFLSSGTIRNYSSSIFDKLGVSNRIEAIRLANKNGWL 198


>gi|302522704|ref|ZP_07275046.1| two-component system response regulator [Streptomyces sp. SPB78]
 gi|302431599|gb|EFL03415.1| two-component system response regulator [Streptomyces sp. SPB78]
          Length = 226

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 59/232 (25%), Gaps = 23/232 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +D    + +  +   +  L  +               L               
Sbjct: 3   VTVLLADDDALVRAGLRLMLGGAPELEIVGEAADGEEAVRLAEELG-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +            + P  L    FH   + +       
Sbjct: 49  -PAVVLMDLRMPGTDGLTATERIRERP--------EAPEVLVLTTFHADEQVLRALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A I   +  +     ++       +    A   +     D    +   L 
Sbjct: 100 AGFLLKDTPPAEIAAAVREVARGRPVLSPLVTRRLIAQVAGGDSPHARRDRARARLASLA 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    +  G ++ EIA  L +S  TV  +++ ++ K     R      
Sbjct: 160 EREREVALAVGRGASNAEIAAELYLSVPTVKAHVSRVLAKLHLNNRVQIALL 211


>gi|167461446|ref|ZP_02326535.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 222

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 11/190 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L          LD  +       ++R + L          +    +   +    
Sbjct: 39  GIEALRLYEDLRPHLLILDISLPRLDGIQVLREIKLRH--------EEAKVIVLTMHEDE 90

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               +      + Y         +   +  +      +       +  +++    + K  
Sbjct: 91  DYITSIMQAGASGYIPKAAVDEELYTAIDSVMNGYMYLRPKETKTL--ISSMLKKVPKEA 148

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        L+ RE E L ++  G +  E A  L +S  TV+ +   +M K     +S  
Sbjct: 149 DSR-NPYVILSPREREVLRFLVRGYSLAETAKALTVSIKTVDTHKTRMMNKLNISKKSEL 207

Query: 237 IAYAVRNNIV 246
           I YA+   ++
Sbjct: 208 IEYALEYRLL 217


>gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 194

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 32/223 (14%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D     + L            + E   G       R        LD  +     
Sbjct: 2   RLVIADDHPLFRMGLK-YALLHQGFDVVAEATDGLQALDACRTLQPDAALLDVKMPGLTG 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   + L+       ++          F          +     Y S   D   +   
Sbjct: 61  IEVCERLRLTHPQIVCVLI--------TTFAEPAIVQAARSAGARGYVSKETDPESLARQ 112

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L        +   D             +     DV       LT RE E L  +++G ++
Sbjct: 113 LR-----DIVAHPDV------------DRLPQVDVPR-----LTPRESEVLPLLAQGYSN 150

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  LG+S +TV +++A +  K     R+ A++ A    ++
Sbjct: 151 KEIAKNLGVSPDTVKDHLARLYAKLDAGDRTEAVSRARSIGLL 193


>gi|329851875|ref|ZP_08266556.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839724|gb|EGF89297.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 212

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 67/213 (31%), Gaps = 10/213 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++ ++        + A+     A   +    D+          + D     +     S  
Sbjct: 4   ILIVEDIAETRQWLGAVVRSAFAGCEVREAPDMRSGVHAAKGAACDLAIVDLGLPDGSGT 63

Query: 96  DKYYNVLQR---PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +      +       +   V       I   +     Y             L  L     
Sbjct: 64  NVISAFREHQPSTLVVVATVMGDDASIIAALSAGAQGYLLKDSPPDLFVRQLEQLGQGIP 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +          +A    + F+S  V    +  LT RE++ L  IS+G  + + A  LG+
Sbjct: 124 ALSPS-------IARRIVDHFRSTAVAHQPEATLTTRELDVLGLISKGLRNADAAHALGL 176

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +TV ++I SI  K    TR+ A   A R  +
Sbjct: 177 AESTVASHIKSIYSKLGITTRAEAAIRAQRMGL 209


>gi|300694330|ref|YP_003750303.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
 gi|299076367|emb|CBJ35679.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum PSI07]
          Length = 230

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 14/228 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V       D L + +     +  T    +  E +      L+         +D  + 
Sbjct: 15  VAIVEDDSGFLDALTQALESAPDMRLTGVAGSRAEGL-----ALLDGAPADVLLVDLGLP 69

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D++   A + +    +++          F      +         Y       AR
Sbjct: 70  DGSGIDVIE--AAARQWSACSIM------VSTNFGDETHVMRSIEAGAAGYLLKDSSAAR 121

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWIS 198
           I   +  L   G  I      +I            + +         L+ RE E L  I+
Sbjct: 122 ILNEIRSLASGGSPISPIIARQILARFRQGGARGTTSEVSASESSPLLSAREKEVLDLIT 181

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T+ EIA ++ +S  TV  ++  I  K    +++ AI  A    ++
Sbjct: 182 KGFTAQEIAKLMALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLL 229


>gi|229172478|ref|ZP_04300037.1| Response regulator [Bacillus cereus MM3]
 gi|228610949|gb|EEK68212.1| Response regulator [Bacillus cereus MM3]
          Length = 212

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 27/216 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICAET---------ETKSLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------SNLMESKEDECKIDTSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|224536867|ref|ZP_03677406.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521533|gb|EEF90638.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 215

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 22/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           HL    D    +  +   +     +  +      A    L++        +D  +     
Sbjct: 12  HLLLIDDHPIVLAGIRNILEVCPEIGEIYAADSAAKALELLKSHDISICMVDIELPDMSG 71

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+L+  + L      Y  ++   E        +   +       +       D   ++  
Sbjct: 72  FELIEQIRLL-----YPDMRIIIETMHSEVWIVRRMVKAD---VDAVILKQSDPENLQEA 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    +               +     +       +   L+ RE E L  ISEG  S
Sbjct: 124 IYSVLSGRKYF-----------CPHFRKCLRKLPPEMPQ--VLSKREQEVLKCISEGLKS 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L IS NTV  +   IM K   K  S  +  A+++ ++
Sbjct: 171 NEIATKLYISVNTVEFHRKQIMLKLEAKNASDMLIKAIKSGVL 213


>gi|182435073|ref|YP_001822792.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463589|dbj|BAG18109.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 246

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 63/241 (26%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + ++ +      +  +            +  L               
Sbjct: 18  VRLLIVDDDPLVRAGLTLMLGGDASIDIVGEGTDGDEVEGLVARL--------------- 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 +    FH   + +       
Sbjct: 63  RPDVVLMDIRMPVMDGLTATERLRRRPGAPE--------VIVLTTFHADEQVLRAIRAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
             +       A I   +  +     ++      ++   AA   +  ++      +     
Sbjct: 115 AGFVLKDTPPALIVDSVRRVAAGDPVLSPAVTRQLMARAAGAGHDDRAGRADRARRRFGG 174

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE +    +  G ++ EIA  L +S  TV  +++ I+ K     R           +
Sbjct: 175 LAERERDVAVAVGRGASNAEIAGSLYLSVATVKAHVSRILAKLELNNRVQIALLVHDAGL 234

Query: 246 V 246
           +
Sbjct: 235 L 235


>gi|70731182|ref|YP_260923.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345481|gb|AAY93087.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 222

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   +    L   +     +                    G     L    
Sbjct: 5   IRLVLADDHEVTRTGFIALLAGNPEFEVVGQARD---------------GEQALALCEQL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +   +             +   +  +        A   
Sbjct: 50  RPDLAILDIRMPLLNGLGAARLLQQRQ--------PEVKVVIFTMDDSPDHLEAAMAAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +      +       +         M +  +    +   LT
Sbjct: 102 VGYLLKDASREEVLDALQRVARGEEALNSAVSARL------LRRMSERGNGQAPQAQALT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+ A    +   +V
Sbjct: 156 ARERQVLGLVAGGFSNREIGEKLGITTGTAKAHVERVIGKLGAADRTQAAVRGMALGLV 214


>gi|229189937|ref|ZP_04316947.1| Response regulator [Bacillus cereus ATCC 10876]
 gi|228593611|gb|EEK51420.1| Response regulator [Bacillus cereus ATCC 10876]
          Length = 212

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 27/216 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGEEAVAYCKKHEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I       +N+ +S +  +  D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVILDKIK------SNLMESKEEEFKIDKSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|256832826|ref|YP_003161553.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256686357|gb|ACV09250.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 226

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +D    + ++ + T SD+       D                G     +V  
Sbjct: 9   PIRVMIVDDDALVRTLLTQILTMSDMHVVAEAHD----------------GDQVIGMVHA 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  ++     + +  +                 +    F T    +      
Sbjct: 53  HHPAVILMDLRMARMSGIESITQVTALTNPPG--------VIAMTSFDTESAILDAIDAG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              + +       +   +  +      + R     +                       L
Sbjct: 105 ARGFVAKDSGPQELATAVRNVAAGEGALSRRAARVVVERLRAAETRPAQQFAQSL-LASL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E    ++EG ++ EIA  L +   TV  ++ S M KT T  R+     A +  +
Sbjct: 164 TDREREITALVAEGFSTAEIATRLYLGEATVKTHLKSAMNKTGTDNRTRLAVLAAKAGL 222


>gi|330961053|gb|EGH61313.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 209

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHAIVREGIKQLIGLARDLQVVGEASNGEQLLETLRHVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +           +     L   +               
Sbjct: 48  -CEVVLLDISMPGVNGLEAIPRIRAL---TNPPAI-----LVLSMHDEAQMAARALKIGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        N              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPDLADRMVFEVGLTDNRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + +V
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKMKLNSLADLVKYAMEHKLV 209


>gi|329851959|ref|ZP_08266640.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839808|gb|EGF89381.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 219

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 15/181 (8%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R   F    +D  +      +L++ +          V          ++          +
Sbjct: 53  RARRFVLAIVDLGLPDGSGIELIQEITAGFPAATCVV--------SSMYDDDGHLFEALS 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y     +   I   L  +      +          +A    + F++       D 
Sbjct: 105 AGARGYLVKHQEPDMIVHYLRRIEQGEPPLSPS-------IALRLLDHFRTQAPKADPDV 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE E L  ++ G T  E+A  LG++ +TV  Y+  I +K    TR  A  +AV+  
Sbjct: 158 ALTGRETETLALLARGLTIAEVARHLGLAHSTVAGYVKLIYQKLNISTRVEATLHAVKRG 217

Query: 245 I 245
           +
Sbjct: 218 L 218


>gi|309777044|ref|ZP_07672013.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915254|gb|EFP61025.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 229

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 14/223 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDL 86
           +  ++  +        +  + +       +    +        ++Q+ D I+       +
Sbjct: 1   MIEIMIAEDQQLIRESLKIIIDSQPEYTVVAALENGEQVLQALKQQRADIILMDIRMPVM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     + Y  +          F      +       + Y      +  +R  + +
Sbjct: 61  DGVECTRRIKESYPDVHVL---ILTTFVEDELVMQALLHGASGYVLKGISLQELRRAVRI 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGK 201
           +   G I+  +    +  +    A   K          +     L  RE + +  I EG 
Sbjct: 118 VLEGGSILDPEVAQRMIAMMQKTAEASKCTAGSAAACAQVNTEKLNKREWKIIQLIGEGL 177

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ EIA  L  +  T+ N +  I+ K   + R+    + ++N 
Sbjct: 178 SNREIARRLIFTEGTIRNNLTVILEKLQLRDRTQLAIWYLQNG 220


>gi|300940508|ref|ZP_07155079.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300454708|gb|EFK18201.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
          Length = 215

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  +++ L  ++  D                       +
Sbjct: 6   MKPTSVIIMDTHPIIRMSIEVLLQKNNELQIVLKTDDY---------------RITIDYL 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 51  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 103 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 154 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|170681356|ref|YP_001742679.1| transcriptional regulator FimZ [Escherichia coli SMS-3-5]
 gi|218698902|ref|YP_002406531.1| transcriptional regulator FimZ [Escherichia coli IAI39]
 gi|170519074|gb|ACB17252.1| fimbriae Z protein [Escherichia coli SMS-3-5]
 gi|218368888|emb|CAR16638.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli IAI39]
 gi|284920345|emb|CBG33405.1| fimbrial transcriptional regulator [Escherichia coli 042]
          Length = 210

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  +++ L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNNELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|156932979|ref|YP_001436895.1| transcriptional regulator NarP [Cronobacter sakazakii ATCC BAA-894]
 gi|156531233|gb|ABU76059.1| hypothetical protein ESA_00782 [Cronobacter sakazakii ATCC BAA-894]
          Length = 214

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 59/216 (27%), Gaps = 17/216 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D       L   +    R     E   G       R        LD  +     
Sbjct: 8   HVLIVDDHPLMRRGLRQLLETDARFRVTGEAGSGEEAIAQARALSPDVILLDLNMRGLSG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +     +           +   V     +         + Y     +   +   
Sbjct: 68  LDTLTMLRRDGVN--------ARIIVLTVSDAQSDIFAMTDAGADGYLLKDSEPEALLEA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                 +           K  +        LTGRE++ L  ++ G ++
Sbjct: 120 IRAGAAGAGAFSEQVQAYLL--------ARKPDEQRDAPFALLTGRELDVLQEVARGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L IS  TV  +I +++RK   ++R  A   
Sbjct: 172 KQIASALQISEETVKVHIRNLLRKLNVRSRVAATVL 207


>gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37]
 gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37]
          Length = 217

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 65/221 (29%), Gaps = 25/221 (11%)

Query: 35  RMIPLDCTVSWTMRM----------YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           R++ ++        +            + +        ++         +D  +      
Sbjct: 2   RILVVEDIAETRRWLCAIVEEVFGGAQILQAETLRQARVLLEQPQDLALIDLGLPDGSGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+R +  S       V          V       +   +     Y       + +   L
Sbjct: 62  DLLRQIRDSRAATICVV--------TTVLGDDASVVGALSAGAQGYLLKENPASLLAHQL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +          +A      F            LT RE E L  IS G  + 
Sbjct: 114 RQIHLGLPALSPS-------IARRIMEHFSLTGPSAPPTHGLTDRETEVLALISRGLRNS 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+A  LG++  TV +YI SI  K    +R+ A  +A R  +
Sbjct: 167 EVARELGLAETTVASYIKSIYGKLGISSRAEASWHATRLGL 207


>gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv.
           oryzae]
          Length = 254

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 65/241 (26%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +       S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQASQTVNSCLDRVFRDVCALGFQSLVYDYAPVPLSMEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT---LPENITPPA---------------GMDNRYCS 132
                 ++  V QR T    P   +     +                     GM      
Sbjct: 72  CEHGYYQHDPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSGMGTGVTV 131

Query: 133 LTFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                    +   +L    LLA       +       +      
Sbjct: 132 PLHLPGGAFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDPQERRCHHIP 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|148545696|ref|YP_001265798.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|167031457|ref|YP_001666688.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|148509754|gb|ABQ76614.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|166857945|gb|ABY96352.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 209

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  +               +                  
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDMQVAGEAGNGEQLLETLR---------------HT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +           +     L   +               
Sbjct: 47  PCEVVLLDISMPGVNGLEAIPRIRAL---HDAPAI-----LMLSMHDEAQMAARALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I       +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAGGGRYIDPSLADRMVFEVGLTESRPLH--------TLLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + +V
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLKVNSLAELVKYAMEHKLV 209


>gi|149203772|ref|ZP_01880741.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
 gi|149142889|gb|EDM30931.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. TM1035]
          Length = 200

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 16/183 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              D  +    D I+       L          +     +           +     +  
Sbjct: 27  AIIDRVESLAPDVILLDLNMPGLGGLTTTEIILEKRPETRILILSM---HDSPEYISSAL 83

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           +     Y         I+  +  +    R +       +                   + 
Sbjct: 84  SHGAAGYVLKDVPTDEIKRAIDAVMTGQRYLCTGAKGSLE-------------PYENPER 130

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE   L  +++GK++ ++A  L IS  TV  +  +I RK    + +G   YA+ +
Sbjct: 131 EQLTNREQTILLQLAQGKSNKDVAQALDISVRTVETHRKNIKRKLGIASTAGLTRYALEH 190

Query: 244 NIV 246
            ++
Sbjct: 191 GVL 193


>gi|222082450|ref|YP_002541815.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727129|gb|ACM30218.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 214

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 51/179 (28%), Gaps = 16/179 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
               +V         +D  +      + +  +     D+          +   V     +
Sbjct: 41  DAVRIVAESRPDVLLMDISMPGG-GLEAIPLILEHVPDQ--------KIVMLTVSEASDD 91

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             T        Y         +   L  +      +          L+A   +   +   
Sbjct: 92  VTTALRSGAKGYVLKGVGSRTLAEILRTVASGETYVAP-------TLSARLISGQGAAPA 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 ELT RE E L  ++ G ++ +I + L +   TV +++  I  K     R+ A 
Sbjct: 145 KADLIRELTDRESEVLQLVATGLSNKQIGLKLDLHEKTVKHHMTQIFTKLGVANRTEAA 203


>gi|209886605|ref|YP_002290462.1| response regulator [Oligotropha carboxidovorans OM5]
 gi|209874801|gb|ACI94597.1| response regulator [Oligotropha carboxidovorans OM5]
          Length = 229

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 20/236 (8%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +     +++  +   +   A +       +    + A        H   +  +  
Sbjct: 13  VLIIEDQADTRAWLRQMVASAFEHAEIAEASSCATALAWLKA--------HGARMADNSG 64

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      D++R +                 +   ++          A     
Sbjct: 65  ALALIDLGMPDGSGIDIIRELTARYPT--------VLRIVTTIYDDDRHLFEAIAAGAQG 116

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   L  +      +       +           K           LT R
Sbjct: 117 YLLKDRHPDTMVQYLHRIDNGEPPLSPSIAQRM----LQHFAQVKPQTSDPESACSLTAR 172

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  +  G    E A +LG++ +TV  Y+  I RK    +R+ A   A R  +
Sbjct: 173 ETDVLRLLGRGLRVAETARVLGLTPHTVAGYVKVIYRKLNISSRAEAAIEANRRGL 228


>gi|104779710|ref|YP_606208.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95108697|emb|CAK13391.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 209

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  +               +                  
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLARDMQVAGEAGNGEQLLEALRQT--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +                 L   +               
Sbjct: 47  PCDVVLLDISMPGVNGLEAIPRIRALNNPP--------AILMLSMHDEAQMAARALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I       +                       L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAGGGRYIDPALADRMVFEVGLTETRPLH--------TLLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + +V
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLKVNSLAELVKYAMEHKLV 209


>gi|209917751|ref|YP_002291835.1| transcriptional regulator FimZ [Escherichia coli SE11]
 gi|300819561|ref|ZP_07099755.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300820219|ref|ZP_07100371.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300920641|ref|ZP_07137059.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300925813|ref|ZP_07141667.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300949234|ref|ZP_07163266.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954356|ref|ZP_07166813.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301327812|ref|ZP_07221006.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|309797189|ref|ZP_07691585.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331672065|ref|ZP_08372861.1| fimbriae Z protein [Escherichia coli TA280]
 gi|209911010|dbj|BAG76084.1| putative fimbrial regulator [Escherichia coli SE11]
 gi|300318655|gb|EFJ68439.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300412380|gb|EFJ95690.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300418107|gb|EFK01418.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300451315|gb|EFK14935.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300527004|gb|EFK48073.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300527887|gb|EFK48949.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300845649|gb|EFK73409.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|308119173|gb|EFO56435.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|324019561|gb|EGB88780.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331071054|gb|EGI42413.1| fimbriae Z protein [Escherichia coli TA280]
          Length = 215

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 6   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 51  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 103 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 154 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|163755753|ref|ZP_02162871.1| phosphoglyceromutase [Kordia algicida OT-1]
 gi|161324274|gb|EDP95605.1| phosphoglyceromutase [Kordia algicida OT-1]
          Length = 225

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +D    S +       + +      D       ++                  
Sbjct: 5   ITIALVDDDALIVSLLKDFLGNQEKMEICYTADSGEMLMEKL------------------ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +    D +V       +          K Y  ++    +     +             
Sbjct: 47  ATETALPDIMVLDLNMKGINGVEVTEFLKKNYPSIK---VILMTSHYKRSFMGFMLKTGV 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        ++   +  ++ KG   + D+L     +   Q +          K+  LT
Sbjct: 104 SAFIPKGISPVQLVEIIKEIYDKGFYFMEDQLG----ILREQISHKSPKPTLIEKNV-LT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I   KT+ EI   L I+  TV  + +++  KT  +  +G + YA++NN +
Sbjct: 159 EREIEVLKLICFQKTAKEIGEQLFITPRTVEGHKSNLFIKTEARNIAGLVIYAIQNNYI 217


>gi|15829851|ref|NP_308624.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128519|ref|NP_415068.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107402|ref|AP_001182.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. W3110]
 gi|157157441|ref|YP_001461723.1| transcriptional regulator FimZ [Escherichia coli E24377A]
 gi|168747779|ref|ZP_02772801.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4113]
 gi|168754650|ref|ZP_02779657.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4401]
 gi|168760301|ref|ZP_02785308.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4501]
 gi|168774612|ref|ZP_02799619.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4196]
 gi|168779039|ref|ZP_02804046.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4076]
 gi|168786397|ref|ZP_02811404.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC869]
 gi|168798110|ref|ZP_02823117.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC508]
 gi|170080118|ref|YP_001729438.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
           substr. DH10B]
 gi|191168110|ref|ZP_03029908.1| fimbriae Z protein [Escherichia coli B7A]
 gi|193064132|ref|ZP_03045216.1| fimbriae Z protein [Escherichia coli E22]
 gi|194429573|ref|ZP_03062093.1| fimbriae Z protein [Escherichia coli B171]
 gi|194432765|ref|ZP_03065050.1| fimbriae Z protein [Shigella dysenteriae 1012]
 gi|195936102|ref|ZP_03081484.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805821|ref|ZP_03248158.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4206]
 gi|208816194|ref|ZP_03257373.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4045]
 gi|208822823|ref|ZP_03263141.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4042]
 gi|209400942|ref|YP_002269188.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4115]
 gi|217325589|ref|ZP_03441673.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218693998|ref|YP_002401665.1| transcriptional regulator FimZ [Escherichia coli 55989]
 gi|238899816|ref|YP_002925612.1| putative DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|254791723|ref|YP_003076560.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020506|ref|ZP_05434371.1| transcriptional regulator FimZ [Shigella sp. D9]
 gi|260853751|ref|YP_003227642.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O26:H11 str. 11368]
 gi|260866691|ref|YP_003233093.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O111:H- str. 11128]
 gi|261224023|ref|ZP_05938304.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257717|ref|ZP_05950250.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O157:H7 str. FRIK966]
 gi|307137178|ref|ZP_07496534.1| transcriptional regulator FimZ [Escherichia coli H736]
 gi|307314549|ref|ZP_07594151.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|331641057|ref|ZP_08342192.1| fimbriae Z protein [Escherichia coli H736]
 gi|331676205|ref|ZP_08376917.1| fimbriae Z protein [Escherichia coli H591]
 gi|84028127|sp|P0AEL9|FIMZ_ECO57 RecName: Full=Fimbriae Z protein
 gi|84028128|sp|P0AEL8|FIMZ_ECOLI RecName: Full=Fimbriae Z protein
 gi|1786747|gb|AAC73637.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13360055|dbj|BAB34020.1| fimbrial Z protein [Escherichia coli O157:H7 str. Sakai]
 gi|85674672|dbj|BAE76312.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K12 substr. W3110]
 gi|157079471|gb|ABV19179.1| fimbriae Z protein [Escherichia coli E24377A]
 gi|169887953|gb|ACB01660.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187769670|gb|EDU33514.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4196]
 gi|188017691|gb|EDU55813.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4113]
 gi|189002953|gb|EDU71939.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4076]
 gi|189358004|gb|EDU76423.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4401]
 gi|189369175|gb|EDU87591.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4501]
 gi|189373564|gb|EDU91980.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC869]
 gi|189379352|gb|EDU97768.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC508]
 gi|190901840|gb|EDV61591.1| fimbriae Z protein [Escherichia coli B7A]
 gi|192929161|gb|EDV82771.1| fimbriae Z protein [Escherichia coli E22]
 gi|194412370|gb|EDX28672.1| fimbriae Z protein [Escherichia coli B171]
 gi|194419027|gb|EDX35111.1| fimbriae Z protein [Shigella dysenteriae 1012]
 gi|208725622|gb|EDZ75223.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4206]
 gi|208732842|gb|EDZ81530.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4045]
 gi|208737016|gb|EDZ84700.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4042]
 gi|209162342|gb|ACI39775.1| fimbriae Z protein [Escherichia coli O157:H7 str. EC4115]
 gi|217321810|gb|EEC30234.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7
           str. TW14588]
 gi|218350730|emb|CAU96422.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli 55989]
 gi|238862256|gb|ACR64254.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BW2952]
 gi|254591123|gb|ACT70484.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752400|dbj|BAI23902.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia
           coli O26:H11 str. 11368]
 gi|257763047|dbj|BAI34542.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia
           coli O111:H- str. 11128]
 gi|260450282|gb|ACX40704.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|306905867|gb|EFN36390.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|315059808|gb|ADT74135.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           W]
 gi|315135217|dbj|BAJ42376.1| transcriptional regulator FimZ [Escherichia coli DH1]
 gi|315616525|gb|EFU97142.1| response regulator [Escherichia coli 3431]
 gi|320180118|gb|EFW55059.1| transcriptional regulator FimZ [Shigella boydii ATCC 9905]
 gi|320192960|gb|EFW67600.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638314|gb|EFX08039.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           G5101]
 gi|320643718|gb|EFX12848.1| transcriptional regulator FimZ [Escherichia coli O157:H- str.
           493-89]
 gi|320649034|gb|EFX17621.1| transcriptional regulator FimZ [Escherichia coli O157:H- str. H
           2687]
 gi|320654612|gb|EFX22617.1| transcriptional regulator FimZ [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320665092|gb|EFX32189.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323153441|gb|EFZ39696.1| response regulator [Escherichia coli EPECa14]
 gi|323160888|gb|EFZ46813.1| response regulator [Escherichia coli E128010]
 gi|323178192|gb|EFZ63770.1| response regulator [Escherichia coli 1180]
 gi|323943154|gb|EGB39311.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323945200|gb|EGB41260.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323972188|gb|EGB67400.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324116773|gb|EGC10687.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326341308|gb|EGD65100.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. 1044]
 gi|326345915|gb|EGD69654.1| transcriptional regulator FimZ [Escherichia coli O157:H7 str. 1125]
 gi|331037855|gb|EGI10075.1| fimbriae Z protein [Escherichia coli H736]
 gi|331076263|gb|EGI47545.1| fimbriae Z protein [Escherichia coli H591]
 gi|332094215|gb|EGI99266.1| response regulator [Shigella boydii 5216-82]
 gi|332097292|gb|EGJ02273.1| response regulator [Shigella dysenteriae 155-74]
          Length = 210

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|41810|emb|CAA35973.1| fimZ [Escherichia coli]
 gi|1778450|gb|AAB40733.1| fimbriae Z protein [Escherichia coli]
          Length = 231

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 22  MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 66

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 67  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 119 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 170 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|15800272|ref|NP_286284.1| transcriptional regulator FimZ [Escherichia coli O157:H7 EDL933]
 gi|332281688|ref|ZP_08394101.1| transcriptional regulator FimZ [Shigella sp. D9]
 gi|25298730|pir||H85553 fimbrial Z protein, probable signal transducer [imported] -
           Escherichia coli (strain O157:H7, substrain EDL933)
 gi|12513435|gb|AAG54892.1|AE005234_8 fimbrial Z protein; probable signal transducer [Escherichia coli
           O157:H7 str. EDL933]
 gi|209777788|gb|ACI87206.1| fimbrial Z protein [Escherichia coli]
 gi|209777790|gb|ACI87207.1| fimbrial Z protein [Escherichia coli]
 gi|209777792|gb|ACI87208.1| fimbrial Z protein [Escherichia coli]
 gi|209777796|gb|ACI87210.1| fimbrial Z protein [Escherichia coli]
 gi|323379624|gb|ADX51892.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|332104040|gb|EGJ07386.1| transcriptional regulator FimZ [Shigella sp. D9]
          Length = 231

 Score =   99 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 22  MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 66

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 67  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 119 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 170 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|315181979|gb|ADT88892.1| two component transcriptional regulator, LuxR family [Vibrio
           furnissii NCTC 11218]
          Length = 207

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 17/216 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D   +  M +  L E  G          +    +   ++ D ++       L    
Sbjct: 4   ILIVDDHPAIRMAVKILLESAGYEDIREATNGVDAVKMAHTERFDLVILDIGIPQLDGME 63

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            ++   K   + +       P   +            + + S + D+  I      +   
Sbjct: 64  VMNRLRKLQPIPKILVLTTQP---SEHFATRCLHMGASGFVSKSEDITNIIDASRAILSG 120

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                         +A++                 L+ RE+  L  +S+G T+ EIA  +
Sbjct: 121 HSYFP---------VASFHHQNAALSGQESEMLKLLSDREMMVLQQLSQGLTNKEIADKM 171

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +S  T++ Y   +M K  + +    I +A RN +V
Sbjct: 172 ILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGVV 207


>gi|303246143|ref|ZP_07332424.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
 gi|302492539|gb|EFL52410.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           fructosovorans JJ]
          Length = 216

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  +    +    +    E   G     L          +D  +     
Sbjct: 5   RLLLVDDHQVVIEGIKGLFADHADIVIAGEATSGEQAVELASKLHPDVVIMDISMPGLNG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +A+ + +   +++                 +       + +     D A +   
Sbjct: 65  VEAT--IAIRQAEPTADIIIYTMHSDQRFI------LELFKAGISGHVLKADDPALLVRA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G         ++           ++      +   L+ RE+E    +++G   
Sbjct: 117 VETVCAGGTFFTTVTPQQLSRQF-----QGETAGDDEARLALLSRREMEVFRLLADGLAL 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L IS  TV  +  +IM K A +T +     A+R+ ++
Sbjct: 172 KRIAATLCISPKTVETHKYNIMEKLAAETPADLTKIALRHGLI 214


>gi|299137142|ref|ZP_07030324.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600547|gb|EFI56703.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 210

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 61/224 (27%), Gaps = 24/224 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  + T  D       L   V+    M  + E   G       R        +D  +   
Sbjct: 7   IIRILTVDDHPTFRRGLATLVAAEPDMILVAEASSGREAVQQFRVHRPDITLMDLQMPEM 66

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +                 +    +    + +         Y         + 
Sbjct: 67  SGLDAIITIRSE--------FPEARIIVLTTYIGDVQILRALKAGARAYLLKNLLHKELL 118

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +F   +    +   E+                    D  LT  E+  L  I+ G 
Sbjct: 119 DAIRAVFTGRKTFSIEASSELA---------------EHATDEALTAGEISVLRLIAAGN 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +IA  L IS +TV   + +I+ K     R+ A    ++  I
Sbjct: 164 ANKQIADQLSISEDTVKGRVKNILSKLGANDRAHAATIGIKRGI 207


>gi|149007477|ref|ZP_01831120.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147761049|gb|EDK68018.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
          Length = 199

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L           A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLML--QPDVESVFQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRSEKLETKVVVV--------TTFKRAGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +  +                   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELMEMVMT-----------------RPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus LMG 18311]
 gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus
           thermophilus CNRZ1066]
          Length = 200

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  +                    G     L+  +
Sbjct: 1   MKLLVAEDQSMLRDALCQLLMLEDDVEEVHAASD---------------GQEAITLLEKE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +  ++        +    +    F          A   
Sbjct: 46  KVDVAILDIEMPVKTGPDVLEWIRANQ--------RETKVVIVTTFKRKGYFKRALAAQV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      ++ +   +  +    +    + +  +                    +  L+
Sbjct: 98  DAYVLKERSISDLMATIHTVLAGQKEYSPELVEGVAF-----------------DNNPLS 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A   + +
Sbjct: 141 QREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTDAVRIAKEKDWL 199


>gi|254485770|ref|ZP_05098975.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
 gi|214042639|gb|EEB83277.1| two component transcriptional regulator, LuxR family [Roseobacter
           sp. GAI101]
          Length = 204

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 25/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L   +     +       +    +  +  L+   + F    LD  
Sbjct: 1   MRVLIADDHVLLRDTLVMFLQAQGDIE-----TSTAADLAGACKLIGDEERFDLVLLDLN 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + ++     +  +                 T              +   T   
Sbjct: 56  MPGMNGLEGLKYALTLKDGQ--------RVALLSGEATREIAEQALDAGAAGFVPKTLPA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    +    D +  +     +                 L+ RE++ L  +
Sbjct: 108 KSMINAVKFMAMGEQYAPVDFMTAVDDTPTHPLAEK------------LSSRELQVLKGL 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EGK + EIA  L IS  TV  ++ ++ RK     R+ A   A    +
Sbjct: 156 TEGKANKEIARDLDISEPTVKLHMKTLYRKVGAANRTQAALIAREAGL 203


>gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator
           [Stenotrophomonas maltophilia K279a]
          Length = 212

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLV 87
             R+   D        + AL + +G    L         D    Q++D ++S      + 
Sbjct: 5   AIRVALADDQALVRAGLRALLQGLGVDVALEAEEGQALLDALSTQRVDVVLSDIRMPGMD 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A+ +     +            F      +         +       A +R  +  +
Sbjct: 65  GIEAVRQLRARGDATPWLL---LTTFDESDLLLRASEAGAQGFLLKDAAPADLREAIERV 121

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++L         ++         +            REV  L  ++ G ++ EIA
Sbjct: 122 AAGETLLLP--------VSTEPVRARYRFHDEAPPTDTFGEREVAILRLLAGGYSNKEIA 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 174 RSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 212


>gi|229023298|ref|ZP_04179807.1| Response regulator [Bacillus cereus AH1272]
 gi|228738003|gb|EEL88490.1| Response regulator [Bacillus cereus AH1272]
          Length = 212

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       +        LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVLDTVNDGKEAVAYCKKYEVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKIICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKI----KSNLMESKEEESKIDKSL-FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|254182439|ref|ZP_04889033.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|184212974|gb|EDU10017.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
          Length = 215

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +     ++         E +      L          +D  
Sbjct: 11  ARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEAL-----TLAEALAPDLALMDIG 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L                     L   +   +           + Y       
Sbjct: 66  MQGMNGIALADVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPA 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +                      A               LT RE + L  +
Sbjct: 118 TEIVRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDILDAL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 167 AQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|66046528|ref|YP_236369.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257235|gb|AAY38331.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 220

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L         +               L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADMPGYTILGETADGAQLAGLAQQL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  + S    D +  +          V      L   + +     +        
Sbjct: 49  PDIILFDICMKSVDGLDALEQLLK--------VQPHCKVLILSMQNDPDMIMRALDIGAQ 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A +   L  L    R +       +   A       ++        + LT 
Sbjct: 101 GYLLKDTTAAELEQALGALRGNERYLSPGIAHTVIERALRGKRSDRARSAKER--YHLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRERII 216


>gi|120554504|ref|YP_958855.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
 gi|120324353|gb|ABM18668.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
          Length = 916

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 3/214 (1%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +      ++      AL EY  A   L       +    +  +                 
Sbjct: 697 LNREQNQIALARVQNALGEYQQAQDTLSALIPAAERNAHNRHLVEILLVYAEALAHEGRN 756

Query: 96  DKYYNVLQRPTELFC--PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           D+   +L++  +            E  T    M   +  L       R  L +L      
Sbjct: 757 DESDAMLEKALDRAENAGFLRLFAEESTALREMLLDFPRLRTPGRWNRELLGMLRDLAAG 816

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGI 212
              +  +     A +  +  +          E L+ RE E L  I +G  + EIA  + +
Sbjct: 817 QPGEASFNSSQEAYHPIDTARPGGEPVNALAEPLSQREQEVLALIHQGLANKEIAERMSV 876

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV  +I ++  K     R+ A+A A    ++
Sbjct: 877 APATVKAHIRNLYGKLGVSRRTEALAKAREVGLL 910


>gi|309789333|ref|ZP_07683923.1| response regulator [Shigella dysenteriae 1617]
 gi|308922727|gb|EFP68244.1| response regulator [Shigella dysenteriae 1617]
 gi|323174572|gb|EFZ60193.1| response regulator [Escherichia coli LT-68]
 gi|332757472|gb|EGJ87807.1| response regulator [Shigella flexneri K-671]
 gi|333017529|gb|EGK36841.1| response regulator [Shigella flexneri K-304]
          Length = 164

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 15/168 (8%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +A S              +   V    P            Y S     
Sbjct: 3   MPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAP 54

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  ++   R I  D   ++ L            +        L+ RE++ +  I
Sbjct: 55  QEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLSERELQIMLMI 107

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 108 TKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 155


>gi|297518835|ref|ZP_06937221.1| response regulator [Escherichia coli OP50]
 gi|323186310|gb|EFZ71660.1| response regulator [Escherichia coli 1357]
          Length = 162

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 15/168 (8%)

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +A S              +   V    P            Y S     
Sbjct: 1   MPGIGGLEATRKIARS--------TADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAP 52

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  ++   R I  D   ++ L            +        L+ RE++ +  I
Sbjct: 53  QEVVSAIRSVYSGQRYIASDIAQQMALSQI-------EPEKTESPFASLSERELQIMLMI 105

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 106 TKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGL 153


>gi|134298790|ref|YP_001112286.1| response regulator receiver protein [Desulfotomaculum reducens
           MI-1]
 gi|134051490|gb|ABO49461.1| response regulator receiver protein [Desulfotomaculum reducens
           MI-1]
          Length = 119

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            + ++ +    + ++         +LT RE E L  I++G ++  IA  L IS  TV N+
Sbjct: 34  RLIVIDSKVEYVKENGKERTSNVNQLTNREFELLKLIAKGISNKAIAKQLFISEKTVKNH 93

Query: 221 IASIMRKTATKTRSGAIAYAVRN 243
           + SI  K     R+ A  YAV N
Sbjct: 94  LTSIYSKLGVTNRTEATLYAVNN 116


>gi|188533225|ref|YP_001907022.1| Nitrate/nitrite response regulator protein NarP [Erwinia
           tasmaniensis Et1/99]
 gi|188028267|emb|CAO96125.1| Nitrate/nitrite response regulator protein NarP [Erwinia
           tasmaniensis Et1/99]
          Length = 210

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 34/241 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E Q+  +++  E       +  L         ++                   GA   +
Sbjct: 2   KEAQKCKVLIVGEHPLLRRSLYQLLAMDRRFNMIVEAGD---------------GAEALV 46

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             R    Q   LD  +      D +  +  +       V+               +    
Sbjct: 47  KARQLHPQLILLDLNMRGISGLDTLNALQANGI--ESPVV------VLTFSAKRRDFTVL 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     D   +   ++++   G           GL A    + +         
Sbjct: 99  REAGVKGYLLKNSDPETLLAQIIVVAEGGVAYSP------GLEAPDALDKW-----IHNP 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E +  ++ G  + +IA +L IS  TV  +I S++RK   ++R  A    + 
Sbjct: 148 LAILTVREQEVMREVASGLANKQIAEMLAISEQTVKVHIRSVLRKLHVRSRVAATVLWLE 207

Query: 243 N 243
           +
Sbjct: 208 S 208


>gi|254249293|ref|ZP_04942613.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124875794|gb|EAY65784.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 247

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ +VL  +       V H  +    +        +      + A               
Sbjct: 11  QIRVVLADDHPATLGGVQHGLSSVPTIRLTGSAGNSTELIALLDA--------------- 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            +      D  +      D +   +  +++     ++        +              
Sbjct: 56  GVCDVLVSDYAMPGGAYGDGIALFSYLQRNY--PAVKLV---VLTMLDNPAVIKGLLGLG 110

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +   S +  V  +   +      G          +  L+A+ +           +   L
Sbjct: 111 ISCIVSKSDAVDHLIPAVHAAATGGTYYSPSFEKIVRTLSAHSSARI------VDQAQNL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +   + G T +EIA  L  S+ T++   A  M+K   +     + YA+ + IV
Sbjct: 165 SSREIEVVRLYASGMTVNEIAEKLSRSKKTISTQKARAMQKLGVEKDIDLLRYAMEHGIV 224


>gi|221065359|ref|ZP_03541464.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|299531846|ref|ZP_07045247.1| two component LuxR family transcriptional regulator [Comamonas
           testosteroni S44]
 gi|220710382|gb|EED65750.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|298720166|gb|EFI61122.1| two component LuxR family transcriptional regulator [Comamonas
           testosteroni S44]
          Length = 210

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 65/219 (29%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +S  + +  + E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLRQFLSEHVDLRVVGEAGNGREAIDLVREHEIDVLLMDLSMPGQSGIDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        I       + Y +   D   I   +  +
Sbjct: 67  AMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECDPQDIAEAIRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +       +                      +L+ RE +    ++ G+T+ +IA
Sbjct: 119 ALGRRYLTPAVADLLAQQLNR--------KDDVPAHEQLSEREFQVFLKLARGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 171 KSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNRLI 209


>gi|94313776|ref|YP_586985.1| putative two component LuxR family transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357628|gb|ABF11716.1| putative two component transcriptional regulator, LuxR family
           [Cupriavidus metallidurans CH34]
          Length = 211

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q  ++L  +     + +  L   S  +A ++     +  T                  
Sbjct: 1   MSQARLLLIDDHTLFRTGLKLLLAASPNVASIMEAGSVMEATEA---------------H 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + ++ +          ++             +P+      
Sbjct: 46  GDKPVDILLLDIQMPGLNGIEGIKVL--RRHFSRAPIVIVSGTSG---IDAIPDEARKEV 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   + D   I   +      G     ++  +            +       K  
Sbjct: 101 A---GFLPKSADPREIEEAIACCLAGGTYFQTEQPGD------------RLPHTRAYKPS 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R++E L  ++ G+++  IA  LG+S NTV  ++A+I+      +R  AI  A R  
Sbjct: 146 QLTPRQLEVLNQLNLGRSNKVIAYHLGLSENTVRVHVAAILDHLGVVSRVEAILEAQRRG 205

Query: 245 IV 246
           +V
Sbjct: 206 LV 207


>gi|322382493|ref|ZP_08056381.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153555|gb|EFX45951.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 215

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 11/190 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L          LD  +       ++R + L          +    +   +    
Sbjct: 32  GIEALRLYEDLRPHLLILDISLPRLDGIQVLREIKLRH--------EEAKVIVLTMHEDE 83

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
               +      + Y         +   +  +      +       +  +++    + K  
Sbjct: 84  DYITSIMQAGASGYIPKAAVDEELYTAIDSVMNGYMYLRPKETKTL--ISSMLKKVPKEA 141

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        L+ RE E L ++  G +  E A  L +S  TV+ +   +M K     +S  
Sbjct: 142 DSR-NPYVILSPREREVLRFLVRGYSLAETAKALTVSIKTVDTHKTRMMNKLNISKKSEL 200

Query: 237 IAYAVRNNIV 246
           I YA+   ++
Sbjct: 201 IEYALEYRLL 210


>gi|300778185|ref|ZP_07088043.1| LuxR family two component transcriptional regulator
           [Chryseobacterium gleum ATCC 35910]
 gi|300503695|gb|EFK34835.1| LuxR family two component transcriptional regulator
           [Chryseobacterium gleum ATCC 35910]
          Length = 209

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 23/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            +     P   + L  ++    T+        ++E         +         LD  ++
Sbjct: 4   VAITDDHPLLLEGLKNILGNSSTIDVVDCFKNVSEMNEG-----LAKQAVDILLLDINLA 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L++ +     +           +   V + LP   +  A     Y      V+ 
Sbjct: 59  DTNSIELIKPLKKKYSN--------LRIIILSVHNELPVINSTLAEGALGYIQKNASVSE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I  G+  ++   + +       +           K       +  +LT RE E L   ++
Sbjct: 111 ILEGITAVYEGEQFLCSQTQSVL----------KKKSADGLNQVPKLTRREKEILAEAAK 160

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T++++A  L IS +TV ++  +++ K  T   S AI  A+   ++
Sbjct: 161 GLTTNQMAEKLFISPHTVESHRKNLIEKFQTSNLSSAIRLAIEYGLI 207


>gi|213421744|ref|ZP_03354810.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 194

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 72/226 (31%), Gaps = 32/226 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIIDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 49  ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L        + +N       H   D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKIILSGYSFFPSETLN-------FISNTRPPKGGHH--DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+I  K   
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKANIFSKLGL 194


>gi|120601631|ref|YP_966031.1| two component LuxR family transcriptional regulator [Desulfovibrio
           vulgaris DP4]
 gi|120561860|gb|ABM27604.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris DP4]
          Length = 235

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 27/237 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++          +  L    D ++ +  +                +      L   D 
Sbjct: 14  RILVADAQPLVREGLKALFGVMDGVSVVAEVSSGGGVLTVCDRARPDLLLLDCCLPEKDG 73

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                L  ++ +    + V  +     D     +                     A   +
Sbjct: 74  ---VLLARLIRARGGGERVLILCGHGGDCLDPAV---------------------AAGAD 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D   +R  +  +   G  +       +   A      +   D   G    LT 
Sbjct: 110 GLLLKEADHEEVRFAVRSVLAGGFFVSPSVAGRL---ATRCRQGWALEDRRTGGWEALTP 166

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A+A R  +
Sbjct: 167 REREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 223


>gi|229132664|ref|ZP_04261511.1| Response regulator [Bacillus cereus BDRD-ST196]
 gi|228650791|gb|EEL06779.1| Response regulator [Bacillus cereus BDRD-ST196]
          Length = 195

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 14/183 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       +        LD  + +    +  + +             +   L    F   
Sbjct: 20  GKEAVAYCKKYEVDIALLDVRMPNMNGVEATKLICEET---------KTKPLILTTFDDD 70

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D  RIR  +  ++    ++    L +I           K  
Sbjct: 71  EYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKI----KSNLMESKEE 126

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    K    T RE+  +  I++G ++ EI+  L IS  T+ NYI S++ KT  + R+  
Sbjct: 127 ESKIDKSL-FTERELSIIALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQI 185

Query: 237 IAY 239
             Y
Sbjct: 186 AIY 188


>gi|167567044|ref|ZP_02359960.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167574121|ref|ZP_02366995.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 215

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +     ++         E +      L          +D  
Sbjct: 11  ARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEAL-----ALAESLEPDLALMDIG 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L                     L   +   +           + Y       
Sbjct: 66  MQGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPA 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +                      A               LT RE + L  +
Sbjct: 118 TEIVRAIGAVLAGQTFFSEG-----------LAARMIHASAEASPLDRLTPRERDILDAL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 167 AQGLSSKQIAQQNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|160897254|ref|YP_001562836.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160362838|gb|ABX34451.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 210

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S  + +  + E   G     LVR        +D  +     
Sbjct: 3   RIGIVDDHAIVRSGLRQFLSEHVDLRVVGEAANGREAIDLVRAHEIDVLLMDLSMPGQSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +           +        P        I       + Y +   D   I   
Sbjct: 63  IDALAMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECDPQEIAEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +       +      + +             +L+ RE +    ++ G+T+
Sbjct: 115 IRTVALGRRYLTPAVADLLAQQLNRKDDAPAHE--------QLSEREFQVFLKLARGETA 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 167 GDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNRLI 209


>gi|322417997|ref|YP_004197220.1| LuxR family two component transcriptional regulator [Geobacter sp.
           M18]
 gi|320124384|gb|ADW11944.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M18]
          Length = 212

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 15/223 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  L    S+      L     G      +R        LD  +     
Sbjct: 4   RLVLADDHPLILNGLTSLFSFEADFEVLASCSNGNDALDEIRRQRPDVAVLDIRMPGLSG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++ R ++                +         + +                   +   
Sbjct: 64  IEVARKVSDERL--------GARLVLLTAALEDEDMLDAVMLGIQGVVLKEMAPQFLVQC 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + + R    +       +    +           LT RE+E +  ++ G  +
Sbjct: 116 IRKVHAGEQWLERRSAKQALEKLLKREAGGREVAGL------LTQREIELVRMVAGGSRN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  ++ +I +K     R   + YA    +V
Sbjct: 170 KEIADRLCISEGTVKVHLHNIYQKINVDGRVALLRYAQEKGLV 212


>gi|86132592|ref|ZP_01051185.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
 gi|85816834|gb|EAQ38019.1| two-component system response regulator, LuxR family [Dokdonia
           donghaensis MED134]
          Length = 212

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                H P     ++ ++  +        +       G +    +         L+  + 
Sbjct: 4   VLIADHHPITRKGISSILQAEGQYDIIGYVKD-----GNNLLNTLTTTEVDILILEIDIP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +      ++ +           ++       P        ++      + Y + T DV R
Sbjct: 59  NLNSITALKAIKREF-----PHIKILVLSCHP---EEMYALSAIKYGASGYVAKTADVER 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +   G  +          L+    N   +      K  +L+ RE+E L  +S 
Sbjct: 111 IINAITQVQKGGIYLNEA-------LSQRLVNDGNATQGLAYKYKKLSSREIEVLNLLSN 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           GK + EIA  L I+  TV+ Y   +++K   +  +  I +A 
Sbjct: 164 GKRNKEIAADLDINEKTVSTYKMRLLKKLEAQNVAELIKHAR 205


>gi|148990003|ref|ZP_01821278.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182684936|ref|YP_001836683.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|225855491|ref|YP_002737003.1| response regulator [Streptococcus pneumoniae JJA]
 gi|303254075|ref|ZP_07340190.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|303260376|ref|ZP_07346346.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262524|ref|ZP_07348466.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265155|ref|ZP_07351068.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303265983|ref|ZP_07351878.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303268085|ref|ZP_07353886.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|147924663|gb|EDK75749.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|182630270|gb|ACB91218.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|225723110|gb|ACO18963.1| response regulator [Streptococcus pneumoniae JJA]
 gi|301802678|emb|CBW35444.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598908|gb|EFL65939.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|302636424|gb|EFL66917.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638542|gb|EFL69007.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302642445|gb|EFL72791.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302644424|gb|EFL74676.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302645372|gb|EFL75606.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
          Length = 199

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 71/222 (31%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +++   + ++ +   G     L+  +      LD  +      
Sbjct: 3   VLVAEDQSMLRDAMCQLLAFQADVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++  +   + +    V+          F              + Y      +A +   L
Sbjct: 63  EVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSIADLMQTL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +    + +                 +V   +   LT +E+  L  I+ G ++ 
Sbjct: 115 HTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGIARGLSNQ 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 158 EIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|120609353|ref|YP_969031.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120587817|gb|ABM31257.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 256

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 67/245 (27%), Gaps = 30/245 (12%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVS 79
           + +  +    D       L   +S    +    E   A     L      Q   LD+ + 
Sbjct: 17  AALLRVFVVDDHTLFRRGLIALLSQYPSLRVAGEAGDAGEALRLAPPLAPQVLLLDNHLP 76

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +R +           +     L   V     +           Y   T +   
Sbjct: 77  GVRGIDAIRGLRE--------AMPDVRVLMLTVSEDGEDLAQALRHGAQGYLLKTIEGDL 128

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---------------------YDV 178
           +   +        ++  + + ++      Q                              
Sbjct: 129 LADAIGRAARGEPVVSMELMGKLVAAFQAQGGPPAREPRADAGAAAVAVTQAPAEGTGPG 188

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G    L+ RE + L  I+ G ++ EIA  L I+  TV  ++  I+RK    +R  A  
Sbjct: 189 AAGSASPLSAREEDVLREIARGASNKEIARALDIAETTVKIHVQHILRKLGLSSRVQAAV 248

Query: 239 YAVRN 243
           YA   
Sbjct: 249 YASER 253


>gi|254428002|ref|ZP_05041709.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
 gi|196194171|gb|EDX89130.1| Sigma-70, region 4 family [Alcanivorax sp. DG881]
          Length = 216

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 29/230 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +     + +      S   A +   D          A  E +G          
Sbjct: 2   TTILIADDHPLFRAALIQAVEASFAGANIHEADSL--------ATLEVLGQQAI------ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +     F  +      +  K   V+   TE    +               
Sbjct: 48  PFDVILLDLHMPGTHGFSGL-VYLREQYRKVPVVVISATEDVDVI-------QRAIHFGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +  V  +   +  +    R +       +             +     +   LT
Sbjct: 100 DGFIPKSASVDTMTDAMRKIMDGERWLPEKARRAMPP-------TLPDHSAMSERITSLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   +  + EG  +  IA  L +S  TV  ++ +I RK   + R+ A+
Sbjct: 153 PQQFRVMGMLMEGMQNKVIAYELDVSEATVKAHMTAIFRKLGVRNRTQAV 202


>gi|325066643|ref|ZP_08125316.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 229

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 75/237 (31%), Gaps = 19/237 (8%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +++  ++++  +       ++ +  ++  L  +            +  L    G      
Sbjct: 7   KLRPTSVMIVDDQRYARLGLALMIRKAPDLHVVAEACDGQEALEILEGLNRSTG------ 60

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L     +D  +         R MA                L    +          
Sbjct: 61  ----LPDVVLMDVRMPGMDGISATRAMARR--------FPTVKVLVLTTYDEDDYAFGAL 108

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +       A++   +  +     ++      E+      +A      +  W + 
Sbjct: 109 EVGASGFLLKDVRAAQLAQAVRAVAQGDAVLTPRVTKELIARGVPRALSGAQREGLWERF 168

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAY 239
             LT RE++ +  I+EG +++EIA  L +   +V   ++ I+ K   + R   A+A+
Sbjct: 169 GALTPRELDVVRLIAEGMSNEEIAERLVLQPASVRRNVSRILAKLHLRDRVQIAVAW 225


>gi|229822369|ref|YP_002883895.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568282|gb|ACQ82133.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 221

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 11/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D           +  +  +  + +   G       R        +D  +   
Sbjct: 1   MTRVLLVDDQAVVRAGYA-VILASEGLDVVGDAASGREAVQRARELRPDVVVMDVRMPGG 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +A         VL   T      F                +     +   + 
Sbjct: 60  DGITATRELAGPGAVDPVPVLVVST------FDLDEYVFGALEAGAGGFLLKDAEPEVLA 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     ++       +       A               L+ RE+E +  +S G 
Sbjct: 114 AAVRRVAAGEGLVDSTLTRRVI---DEFARRRAPRSADPDALGLLSPRELEIVELLSRGS 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +  +TV ++++ IM KTAT+ R   + +A  + +V
Sbjct: 171 SNAEIAAALVLEPSTVKSHLSRIMTKTATRDRVQLVVWAFTHGVV 215


>gi|167840961|ref|ZP_02467645.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 215

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 57/229 (24%), Gaps = 24/229 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R   V   P   D L   +     ++         E +      L          +
Sbjct: 8   PHTARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEAL-----ALAESLAPDLALM 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       L                     L   +   +           + Y    
Sbjct: 63  DIGMQGMNGIALAGVFHAR--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKD 114

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I   +  +                      A               LT RE + L
Sbjct: 115 SPATEIVRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDIL 163

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +++G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 164 DALAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|163842188|ref|YP_001626593.1| two component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162955664|gb|ABY25179.1| two component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 225

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 29/230 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  +       ++ +   +  +  +   +       ++  L               
Sbjct: 16  ISVALADDQALIRDGLATILAFAQDIDVVAIAENGRDVLQQINKLAIDC----------- 64

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +         + +     +           +    +          A   
Sbjct: 65  KPQVTLLDLQMPVLDGVGTTKELLSQYPEM--------AIIILTTYQDDASISAALAAGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +      RI   +                 +                      ELT
Sbjct: 117 RSYLTKDAGRDRILAAIRSTASGQATFDVAVARRL----------ISGLKPSKPSFPELT 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE E L  I+ G+ + EIA    +S  TV  +I +I  K   + R+ AI
Sbjct: 167 ERESEILALIAAGRNNQEIAQESFVSVATVKTHINNIFAKLQLRDRAQAI 216


>gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 209

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L  R+D    ++           +    +             
Sbjct: 1   MKILIVDDHPVLRDGVEALLRRNDAALAVVQAASADDAMQMLDQHAD------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +A +              +         +     A   
Sbjct: 48  -IDAIVLDLKMRGTSGVDAIAALARARPALQ--------IIVLSSSEDPRDVRAAFAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     +   ++++    R +    L +    A                   LT
Sbjct: 99  LGYVPKSASAHTLLSAIVMVLNGERYVPPLLLDDGAAYAIEPTRHAAGAP--------LT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R++E L +++EG  +  IA  LG+S  TV  +I +I R      R+ A A   +  ++
Sbjct: 151 PRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209


>gi|183221890|ref|YP_001839886.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911960|ref|YP_001963515.1| two component response regulator receiver protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776636|gb|ABZ94937.1| Receiver component of a two-component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780312|gb|ABZ98610.1| Putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 212

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 18/182 (9%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD ++S     D+V  M  S              +      +         
Sbjct: 49  AIESLDILFLDIMLSGMTGIDVVGKMNESGSKI--------KVIMLTNMSSDEMIFNSIK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   + D+ RIR  + ++   G  I          +A    + F+       ++ 
Sbjct: 101 NGALGYILKS-DIGRIREIIEVVKGGGATITP-------TIALRVFSSFRKVKT--NEEE 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  + +GK    IA +L +S +TV+ Y+ SI +K     R      A + +
Sbjct: 151 SLTDRETQILQLLVKGKKISSIAELLLLSEHTVHGYVKSIYKKLMVHNRVELTLKAQKLS 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. HTCC2601]
          Length = 204

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 61/217 (28%), Gaps = 21/217 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVG------ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++  D        + A  +         AS F      +  +   D ++       +  
Sbjct: 2   RVLIADDHDLLRDTLIAFLDDEDGIETGSASSFDEALQRMKDDAAYDLVLLDYKMPGMNG 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L +                    +              +   T     +   +  + 
Sbjct: 62  LQGLKQALAIGGARHVALISGE---ASREIAEEALELGAAGFVPKTLPAKSLVNAVRFMA 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              +      +     +  +                 LT RE+E L  ++EGK++ EIA 
Sbjct: 119 MGEQYAPIAFMTAAEEVEEHPLAK------------SLTKREMEVLKGLTEGKSNKEIAR 166

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I+  T+  ++ ++ RK     R+ A   A    I
Sbjct: 167 DLEITEPTIKLHVKTLYRKLDVNNRTQAAIVARDAGI 203


>gi|119775211|ref|YP_927951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767711|gb|ABM00282.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 238

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 66/237 (27%), Gaps = 29/237 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
             +++ +N+++  +     + +    + +    R    D   +    +            
Sbjct: 15  IMKLENLNVIIADDHPLFRNALRQALSSAFADTRWFEADSADALQQLLDK---------- 64

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                    E   D ++             L     +Y  +                   
Sbjct: 65  --------PEVDYDLVLLDLQMPGSHGYSTLIHLRSHYPDIPVVVIS---AHEDAQTISR 113

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   +   +  +  +   +  +      + +D                   D   G
Sbjct: 114 AIHYGSAGFIPKSASMETLTEAMSAVLYGDIWLPQDI--------ELVKIEEDGTDQVAG 165

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K  +LT ++   L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 166 KLADLTPQQYRVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 222


>gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 210

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 16/217 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRC 89
           R+   D  +     + AL +  G              D      +D ++S      L   
Sbjct: 5   RIALADDQILVRAGLRALLQQQGVEVVCEADDGQGVLDALAIHTVDVVLSDIRMPGLDGI 64

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            AL +         R   L    F      +         +         +R  +  +  
Sbjct: 65  QALEQLR---ARGDRTPVLLLTTFDDSDLLLRASEAGAQGFLLKDAAPEDLREAIERVAA 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              ++          ++         +            REV  L  ++ G ++ EIA  
Sbjct: 122 GDTLLQP--------VSTDPVRARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIART 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 174 LFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210


>gi|307128200|ref|YP_003880231.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|306485262|gb|ADM92131.1| response regulator [Streptococcus pneumoniae 670-6B]
          Length = 199

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D + +++ L           A     G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDAMCQLLTL--QPDVESVFQA---KNGQEAIQLLEKESVDIAILDVEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +   + +    V+          F              + Y      +A + 
Sbjct: 60  TGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    +    + +                 +V   +   LT +E+  L  I+ G 
Sbjct: 112 QTLHTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGIARGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 155 SNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|271965007|ref|YP_003339203.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508182|gb|ACZ86460.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 214

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 30/228 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     V+ L      +  +       S   R+ AL               
Sbjct: 2   IRVFLLDDHEVVRRGVAALLESEGDIEVVGEAGTAESAVARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+ R +  +  +           L    F              
Sbjct: 47  RPDVAVLDVRLPDGSGVDVCREVRSAMPELAC--------LMLTSFADDDALFNAVMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       + +   +  +     ++       +           +   V       L+
Sbjct: 99  SGYVLKQIHGSDLVGAVRTVAAGQSLLDPQTTASM-------LARLREQAVRKDPLAALS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +E   L  I EG T+ +I   L ++  TV NY+++++ K + + R+ 
Sbjct: 152 DQERHILELIGEGMTNRQIGERLYLAEKTVKNYVSNLLAKLSMQRRTQ 199


>gi|256823996|ref|YP_003147956.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
 gi|256687389|gb|ACV05191.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Kytococcus sedentarius DSM
           20547]
          Length = 201

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 65/225 (28%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +     +  + +   G +    VR        LD  +   
Sbjct: 1   MTRILVVDDQALVRGALAALLDLEDDLQVVGQVDSGPAAVDFVRDTSVDVVLLDIEMPGG 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +  +              L    F              + +         + 
Sbjct: 61  GGIDALPDLLTAPTPP--------RVLVVTTFGRPGYLRRALDAGASGFVVKDCPPTELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +       R +  D   E  L                     L+ RE + L   ++G+
Sbjct: 113 EAVRRTAAGLRTVDADLAAESALAG----------------PNPLSPRETDVLRLAADGQ 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              EIA  L +S  TV N+++S + KT  +T +GA   A  N  +
Sbjct: 157 GVAEIAGALFLSPGTVRNHLSSAIGKTGARTSAGAATTARDNGWL 201


>gi|239816035|ref|YP_002944945.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802612|gb|ACS19679.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 215

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 60/246 (24%), Gaps = 33/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    Q + ++L  +          +      +      D                    
Sbjct: 1   MTQATQPIRVMLVDDHALVRMG-FRMLLADAQIEVAAEADTGEQACQD------------ 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      + +R +   +         +   L            
Sbjct: 48  ---YPQVRPDVVVMDLSMPGMGGLEALRRLLAHD--------PKARVLALSAHEDTIHPR 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y +       +   +  +    R I  +    +              +   
Sbjct: 97  RVLRAGALGYLAKRSAPDALIAAVKAVARGDRYIDANTAQALAT---------AQIEGEA 147

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE      ++ G T  +IA  L +S +TV +++  + +K     ++     A
Sbjct: 148 NPADLLSEREFSVFIQLARGMTVAQIASTLNLSLSTVGSHLYRVKQKLGATNQAELTWVA 207

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 208 LRWGLI 213


>gi|126456846|ref|YP_001077162.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|126230614|gb|ABN94027.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
          Length = 215

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 57/225 (25%), Gaps = 20/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIV 78
           T   + L    D       L   +     +  + E   A     L          +D  +
Sbjct: 7   TPRTARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGDADEALTLAEALAPDLALMDIGM 66

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L                     L   +   +           + Y        
Sbjct: 67  QGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPAT 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +                      A               LT RE + L  ++
Sbjct: 119 EIVRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDILDALA 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 168 QGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|107023986|ref|YP_622313.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116691073|ref|YP_836696.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|170734407|ref|YP_001766354.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|206558935|ref|YP_002229695.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|254246933|ref|ZP_04940254.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|105894175|gb|ABF77340.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116649162|gb|ABK09803.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|124871709|gb|EAY63425.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|169817649|gb|ACA92232.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
 gi|198034972|emb|CAR50844.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 218

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       +  L     +   +   +                G      V   
Sbjct: 3   LNILLVDDHAIVRQGIRQLLIDRGVARDVTEAEN---------------GGDAMAAVDKQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 48  EFDVILLDISLPDTNGIEVLKRLKRK--------LTRTPVLMFSMYREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 100 AGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 210


>gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali
           symbiont]
          Length = 198

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 38/233 (16%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +  L      L  +   +                              
Sbjct: 1   MIVDDHPLMRRGIRQLLALEPRLEVVAEANNGTEARRL-------------------APD 41

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      D ++ +                 L   V     +         + Y
Sbjct: 42  VILLDLNMKGMSGLDTLKALRHEGV--------AACILVLTVSDARSDIYAMMDAGADGY 93

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +   +   +M       +                A    +         +LT RE
Sbjct: 94  QLKDSEPELLLAQVMRGAQGENVFREV-----------VAEYLATRQPSANPFRQLTERE 142

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ L  ++ G ++ EIA  L IS  TV  +I +++RK   ++R  A    + +
Sbjct: 143 LDVLQEVARGLSNKEIAATLHISEETVKVHIRNLLRKLDVRSRVAATVLWLES 195


>gi|213692504|ref|YP_002323090.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523965|gb|ACJ52712.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458651|dbj|BAJ69272.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 217

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK---------LDSIVSSDWPFD 85
           R+  +D        +  +    G +  L    D     +          D ++       
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTAEVLWTANDGDTAVRRYFETPASRPDVLLIDIQMPG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  +        +     F   F                Y     DVA +   L 
Sbjct: 62  TSGLDAARDILATDPAARIL---FLTTFADQSYIAQAMGLGAKGYLIK-QDVAAVGPALQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  + L ++       A+   S D     +  L  RE E    ++EG  + +
Sbjct: 118 AVMAGQVVLGAEVLGKLTERTPDPADSDDSGDTADSIEGLLGEREREITALVAEGLDNRD 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV N I++I+ K     R+     
Sbjct: 178 IAARLFLSEGTVRNRISAILDKLGLTNRTQLAIL 211


>gi|297199299|ref|ZP_06916696.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197717164|gb|EDY61198.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 210

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 64/229 (27%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ ++  +    ++ A     G      V         LD  
Sbjct: 11  IRVLLAEDQQMMRGALALLLGMEPDIQVVAQVAA-----GDVIVDAVLTHRPDVALLDIE 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +     D           L    F                +      V
Sbjct: 66  LPGMSGLDAAADLRDQAPD--------CRVLILTTFGRPGYLRRAMEAGAAGFLVKDGPV 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     +I                               LTGRE + L   
Sbjct: 118 EELAASIRRVLTGETVIDPALAAAALSAG----------------PSPLTGRECDVLRAS 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T  +IA  L +S +TV NY++S + KT T+ R  A+  A +   +
Sbjct: 162 TDGATVADIADRLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGWL 210


>gi|188579615|ref|YP_001923060.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343113|gb|ACB78525.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 222

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 29/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                +++VL  +       V+ L   S  +  +  ++                GA+ + 
Sbjct: 1   MPRTPIHVVLADDHPVFRHGVTSLIADSGEIVVVASVET---------------GAAAYR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            +         LD  +       ++R +A +          R   +   V+ +       
Sbjct: 46  AIVQHEPDVAILDINMPEMNGVTVLRHLARTG--------ARTQAIMLSVYESRVYIDQA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         I   +  +   G  +         L      +   S  V    
Sbjct: 98  FEAGARGYVLKRSAFQNIASAVRAVHAGGIYLDP------ALPERTAPHRRLSSSVDDAA 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE + L +++ G TS E+A  LG +   +    A    K    +R+  + +A+ 
Sbjct: 152 CSTLSERERDILRFVAFGFTSKEVADRLGATAKAIETQKARACTKLGLASRAQIVQFAIL 211

Query: 243 NNIV 246
              +
Sbjct: 212 QGWL 215


>gi|332199316|gb|EGJ13394.1| response regulator [Streptococcus pneumoniae GA41317]
          Length = 199

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L           A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLML--QPDVESVFQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 200

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G S    V+         D  +      +L   +                 +    F   
Sbjct: 36  GRSALEEVKTHQPDLLITDIEMPHLSGLELAAEVKKLGL--------GTRVVIVTTFGRA 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y       + +   +  ++  GR I         LLAA         
Sbjct: 88  GYLRRALEAGASGYLLKDAPSSELAEAVRRVYLGGRAIDP-------LLAAQA------- 133

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
              W ++  LT RE   L    EG+TS EIA  LG+S  TV NY++  + K   + R  A
Sbjct: 134 ---WSEEDPLTDRERRVLRLAGEGRTSAEIAAELGLSEGTVRNYLSEAISKLGAQNRVEA 190

Query: 237 IAYAVRNNIV 246
              A     +
Sbjct: 191 ARIAREKGWL 200


>gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1]
 gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1]
          Length = 146

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++EG ++ EIA +L +S +T+  +++++  K   K R+ AI  A +  I
Sbjct: 84  LSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKAKQLQI 143

Query: 246 V 246
           +
Sbjct: 144 L 144


>gi|328544840|ref|YP_004304949.1| Two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326414582|gb|ADZ71645.1| Two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 221

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 34/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
             ++  +       +          + +         T R+ +  E              
Sbjct: 7   RFIIADDHPLFRGALRQTLELQYPGSVIEEAGTLEDVTARLESDGE-------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-PAGMD 127
                LD  +     F  +  +           +              P+ I        
Sbjct: 53  VDLVLLDLTMPGMRGFSGLMYLRAQF-----PAVPVVIVSAN----EEPQAIRRCVEFGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +  +  IR  +  +   G     +        +A                  LT
Sbjct: 104 SGFIPKSHGIEVIREAIAAVMNGGVWTPPEVNLAADDGSAELVQRLA----------TLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A R
Sbjct: 154 PQQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAASR 208


>gi|288958203|ref|YP_003448544.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910511|dbj|BAI72000.1| two-component response regulator [Azospirillum sp. B510]
          Length = 254

 Score =   99 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 68/230 (29%), Gaps = 18/230 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   +       + L R++  D           L E +G     +      Q   LD
Sbjct: 27  DSVRAFLIDSNKLFREGLKRLLD-DSPFQIVAEAGNLREALG----SVESGMRPQLVLLD 81

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
                D   D +R +           L     +                   + Y     
Sbjct: 82  LQNGGDEEADGMRRLRAL--------LPETRMVILTSDLCTRRLANALEAGADGYLMKDL 133

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   L L+    ++        +  ++                   L+ REV+ L 
Sbjct: 134 SSDALAQSLKLVMMGEKVFPTHLAALL--ISGRVNGN---GTEMPVSRKGLSQREVQILR 188

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G ++  IA  L I+  TV  ++ S++RK     R+ A  +A+ N I
Sbjct: 189 CLLNGDSNKMIANHLNITEATVKVHLKSLLRKINASNRTQAAIWALNNGI 238


>gi|317476845|ref|ZP_07936088.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907020|gb|EFV28731.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 217

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 80/244 (32%), Gaps = 32/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + + I+L  + +     +  +   S  L  +  +    S    +  +      + FL
Sbjct: 1   MKEKDIRILLVDDHDLVLQGLKRIVECS--LPEIKTVCTASSGREALLLIASQC-FNLFL 57

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L           D  +      +++  +             +   +   +   +      
Sbjct: 58  L-----------DMELPDLSGLEIISRIREK-----DP---QARIIVNTMHEEIWFIRNL 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                +     + D  +I   +  +   G              A    N  +  D   G+
Sbjct: 99  IQCDVDSILFKSVDSNKIVEAIRCVLDGGTY--------YCTYAEQVRNQMRRSDE--GR 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE++ L  ISEGK + EIA  L +S NTV+ +   ++ K   K  +  I  A+ 
Sbjct: 149 REELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVADLIMTAIS 208

Query: 243 NNIV 246
             I+
Sbjct: 209 RGII 212


>gi|300897236|ref|ZP_07115679.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300929101|ref|ZP_07144595.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|301020323|ref|ZP_07184432.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300358978|gb|EFJ74848.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300398802|gb|EFJ82340.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300462974|gb|EFK26467.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
          Length = 215

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 6   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 51  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 103 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTIT 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 154 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|331651498|ref|ZP_08352518.1| fimbriae Z protein [Escherichia coli M718]
 gi|331050771|gb|EGI22828.1| fimbriae Z protein [Escherichia coli M718]
          Length = 231

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 22  MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 66

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 67  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 119 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTIT 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 170 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|157160059|ref|YP_001457377.1| transcriptional regulator FimZ [Escherichia coli HS]
 gi|170021084|ref|YP_001726038.1| transcriptional regulator FimZ [Escherichia coli ATCC 8739]
 gi|188496026|ref|ZP_03003296.1| fimbriae Z protein [Escherichia coli 53638]
 gi|193067761|ref|ZP_03048728.1| fimbriae Z protein [Escherichia coli E110019]
 gi|194437417|ref|ZP_03069514.1| fimbriae Z protein [Escherichia coli 101-1]
 gi|218553099|ref|YP_002386012.1| transcriptional regulator FimZ [Escherichia coli IAI1]
 gi|218703819|ref|YP_002411338.1| transcriptional regulator FimZ [Escherichia coli UMN026]
 gi|253774477|ref|YP_003037308.1| transcriptional regulator FimZ [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160603|ref|YP_003043711.1| transcriptional regulator FimZ [Escherichia coli B str. REL606]
 gi|256023848|ref|ZP_05437713.1| transcriptional regulator FimZ [Escherichia sp. 4_1_40B]
 gi|293403656|ref|ZP_06647747.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1412]
 gi|293413791|ref|ZP_06656440.1| hypothetical protein ECDG_00336 [Escherichia coli B185]
 gi|298379266|ref|ZP_06989147.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1302]
 gi|312970632|ref|ZP_07784813.1| response regulator [Escherichia coli 1827-70]
 gi|157065739|gb|ABV04994.1| fimbriae Z protein [Escherichia coli HS]
 gi|169756012|gb|ACA78711.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|188491225|gb|EDU66328.1| fimbriae Z protein [Escherichia coli 53638]
 gi|192959173|gb|EDV89609.1| fimbriae Z protein [Escherichia coli E110019]
 gi|194423586|gb|EDX39576.1| fimbriae Z protein [Escherichia coli 101-1]
 gi|218359867|emb|CAQ97409.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli IAI1]
 gi|218430916|emb|CAR11790.1| DNA-binding transcriptional regulator, isolated component of a
           two-component regulator system [Escherichia coli UMN026]
 gi|242376314|emb|CAQ31007.1| FimZ transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253325521|gb|ACT30123.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972504|gb|ACT38175.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
           str. REL606]
 gi|253976714|gb|ACT42384.1| predicted DNA-binding transcriptional regulator [Escherichia coli
           BL21(DE3)]
 gi|291429509|gb|EFF02529.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1412]
 gi|291433849|gb|EFF06822.1| hypothetical protein ECDG_00336 [Escherichia coli B185]
 gi|298280379|gb|EFI21883.1| fimbriae expression FimZ transcriptional regulator [Escherichia
           coli FVEC1302]
 gi|309700797|emb|CBJ00094.1| fimbrial transcriptional regulator [Escherichia coli ETEC H10407]
 gi|310337281|gb|EFQ02419.1| response regulator [Escherichia coli 1827-70]
 gi|332341899|gb|AEE55233.1| transcriptional regulator FimZ [Escherichia coli UMNK88]
          Length = 210

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTIT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|154244941|ref|YP_001415899.1| two component LuxR family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154159026|gb|ABS66242.1| two component transcriptional regulator, LuxR family [Xanthobacter
           autotrophicus Py2]
          Length = 210

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 31/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V+ L       + ++           +  + E+      +L    
Sbjct: 1   MKILIVDDHSVVREGVAALLLSGFAGSCVLEA---HDCARGLDIVDEHADLDIVVL---- 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +        +                    +         +     A   
Sbjct: 54  -------DLGLPGMGGMSAIPEFGRRR--------PALPVIVLSSSENAHDVKEALALGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
             Y   +     +   +  +      +     L +   +A        + +        L
Sbjct: 99  LGYVPKSASRQTLLDAMEFVLKGHVYVPPFTLLPDAAPVA--------TSEAAEEPAPHL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T R++E L  +S G ++ EI   L +S  TV  +I SI R      R+ A + A + N++
Sbjct: 151 TTRQLEVLKLLSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLHVINRTQAASAARQGNLI 210


>gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 222

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 71/216 (32%), Gaps = 12/216 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +     M  +    G S  L ++        LD+++     F+
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYM-VMVALDGISALLRIQRRRPDLILLDAMMPGMDGFE 71

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +          VL      F          +         Y +       +   + 
Sbjct: 72  TCRQIKQQPDASNIPVL------FMTALTDSEHVVEGFEAGAIDYVTKPIQCNEMIARVA 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                 R +   R           A             F+LT REV+ L W++ GKT+ +
Sbjct: 126 SHLRTARTLQSARSTSQPPGINDAAAY-----TRLSSSFQLTEREVDVLRWVACGKTNKD 180

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           IA IL +S  TVN ++  I  K   +TR+ A + A+
Sbjct: 181 IADILQLSPRTVNKHLEHIYVKLGVETRTAATSVAL 216


>gi|296130400|ref|YP_003637650.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022215|gb|ADG75451.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 229

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 20/234 (8%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLV 64
               + L+  D  R      +    D     + L   V  +  M  + E   G     +V
Sbjct: 7   SPTAVTLSDRDPDRAPDRVSVVVVDDNAVIRMGLRSIVDASTTMRWVGEAADGVEAVQVV 66

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R  +     LD  +                      V      L                
Sbjct: 67  REKVPDVVLLDVRMP-----------RRDGVQVASEVRAWSRVLMLTYSDAPEVVRAALD 115

Query: 125 GMDNRYCSLT-FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
              N Y     F    +   ++ +     ++           A     +  +       D
Sbjct: 116 AGANGYLVHGQFTGPDLERAVLAVASGAMLLS-------APAAEALRRVPTAAPPGPRSD 168

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             L+ R+ E +  ++ G+T+  IA  L +S  TV N++  I  +    TR+ A+
Sbjct: 169 LGLSERQQEIMELVAAGRTNGAIAQELYLSEKTVKNHVNHIFARLGVATRAEAV 222


>gi|288959031|ref|YP_003449372.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911339|dbj|BAI72828.1| two-component response regulator [Azospirillum sp. B510]
          Length = 244

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 69/252 (27%), Gaps = 23/252 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSH--LPTRSDLLARMI------PLDCTVSWTMRMYAL 52
           M FE+Q      +  +  R   V       R      +        +    S    +   
Sbjct: 2   MEFELQARAGSRSAGNPARIFLVVDEQPMVRHGFALSIGEICPGTRVLEAGSLNEALEIG 61

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
                 +  L        E       +       +R +  +        L     L    
Sbjct: 62  RRTPDLALVLYDPGQPRGETGGTVDDAGGGAIPGLRRLKET--------LGDVPVLILTN 113

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
              + + +         Y   T     +   + L       +         +L    A  
Sbjct: 114 SDEVADIVDSVRMGARGYVLKTSPPEVLEHAISLALSGDIFLPL----PRAVLNGALAEG 169

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +  D    +   LT R+ +    +  G ++ EIA  LG+   TV  ++ +IM+K   + 
Sbjct: 170 PQGGDDILDR---LTDRQRDVFELLLAGHSNKEIARGLGVLEGTVKVHVRAIMQKLGVRN 226

Query: 233 RSGAIAYAVRNN 244
           R+     A RN 
Sbjct: 227 RTQVAVVAARNG 238


>gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
 gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces
           albus J1074]
          Length = 211

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V  L    D       L   +               +        L     +D ++  
Sbjct: 1   MTVIRLLLADDHPIVRAGLRAVLETEPDFEIAG----EAASAEEAVALAGRLAVDVVLMD 56

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                  R                P  L    + +  + +         Y         +
Sbjct: 57  LQFGPGARMNGSEATAAITARPGAPRVLVVTTYDSDADTLPAIEAGATGYLLKDAPPEEL 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +         +       +                       L+ RE E L  ++EG
Sbjct: 117 AEAVRTAAAGRTTLAPAVADRL-------------LRRMRTPGTALSRRETEVLGLVAEG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  I+  L +S+ TV +++  I  K    +R+ A+A A+   ++
Sbjct: 164 MSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGLI 209


>gi|261406784|ref|YP_003243025.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261283247|gb|ACX65218.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 216

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 69/215 (32%), Gaps = 18/215 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L+  ++    M  + T   G +   LV     Q   +D  +      
Sbjct: 6   ILIAEDQTIVREGLETIINMEPEMEVVATTDNGQTACELVEQLRPQLVLMDIEMPVMNGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +  S  D           L    F      I   A   + Y    F   +I   +
Sbjct: 66  AATHQIKQSNPDTI--------VLILTTFTEEDFIIEALAKGASGYLLKDFTSQKIIASI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKT 202
                   ++      ++           ++  V      ++ LT RE++    ++E K 
Sbjct: 118 REAIRGELMLPSKVAAKLA-------ARLRTTGVPQFPVQNYNLTPRELQIAKLMTEYKN 170

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + EIA +L I+  TV NYI+ I  K     R+ AI
Sbjct: 171 NREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|170736604|ref|YP_001777864.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818792|gb|ACA93374.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 241

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ +VL  +       V H  +    +        +      + A               
Sbjct: 5   QIRVVLADDHPATLGGVQHGLSSVPTIRLTGSAGNSTELIALLDA--------------- 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            +      D  +      D +   +  +++     ++        +              
Sbjct: 50  GVCDVLVSDYAMPGGAYGDGIALFSYLQRNY--PAVKLV---VLTMLDNPAVIKGLLGLG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +   S +  V  +   +      G          +  L+A+ +           +   L
Sbjct: 105 ISCIVSKSDAVDHLIPAVHAAATGGTYYSPSFEKIVRTLSAHSSARI------VDQAQNL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +   + G T +EIA  L  S+ T++   A  M+K   +     + YA+ + IV
Sbjct: 159 SSREIEVVRLYASGMTVNEIAEKLSRSKKTISTQKARAMQKLGVEKDIDLLRYAMEHGIV 218


>gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 240

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 23/239 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S       +++ +  LD   +    +  L     +   +  ++           ++ + 
Sbjct: 9   ASRDLLIQQMVSTISELDGQTAIENALEWLRRECNSERAMFYQFKGPVLLTF---ITCNV 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVF-HTLPENI--------------TPPAGMD 127
                +     E      V++                                     + 
Sbjct: 66  DDAWGKAYRQREFITQDPVIR-CYRNQLGFVNWQDAFRQYPVSACYEEIVVTCELLPAIS 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A     +  L   GR I  ++ + +  L     ++ +           LT
Sbjct: 125 YGYMN-HCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFC---SRGLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 181 HRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239


>gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
 gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 260

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCM 90
               D       +++   + +G    +     + ++     +V S     +   D+    
Sbjct: 12  FTAHDTLDGRIDQVFEAMKSIGFEALIYDYTPVPRDLDGTIMVPSLLKLRNISEDMHDYW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPAG-----------------MDNRYCS 132
                 +   V Q       P F    P+  T                     M      
Sbjct: 72  FDRGYFRIDPVQQVALRTSTPFFWNYDPDADTLIRRFMSDDTAPVARYLSERDMSTGVTV 131

Query: 133 LTFDVARIRIGLMLLFPKGRII----LRDRLWEIGLLAAYQANM---FKSYDVHWGKDFE 185
                      +  +   G           + +  LLA                      
Sbjct: 132 PVHMPRGDYATVTGVRFGGNRAFEGHALRYIADFNLLAHVFHEAAYSLFDAQAFNAGTAR 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + +EG ++ EI+ I+  S  TV  ++ +  +K   K R+ A+  A    +
Sbjct: 192 LTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLNAAAKKLGAKNRTQAVVRATHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|296138738|ref|YP_003645981.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296026872|gb|ADG77642.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 214

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 66/229 (28%), Gaps = 28/229 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +VL  + E      + +   +  +  +                    G     ++  
Sbjct: 2   PIRVVLADDQEMVRMGFAMILGGAADIEVVGQAAD---------------GVEAISVIAR 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++ R +A +              +    F          A  
Sbjct: 47  CRPDVALLDIRMPQLEGIEVCRRVAGTG----------VRAVMVTTFGEPDYVDDSLAAG 96

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   +        +I  +   ++        +         G   EL
Sbjct: 97  ASGFLLKDAGPDLLLAAVRAAAEGDALISPELTVDLLARNRRAGSRE---PAAAGAIAEL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           T RE E    ++ G+T+ EIA  L IS  TV  ++++I ++   + R  
Sbjct: 154 TPREREVAACVARGRTNAEIADELVISLGTVKTHLSAIGQRLGARNRVE 202


>gi|320532874|ref|ZP_08033645.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134904|gb|EFW27081.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 152

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 3/145 (2%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +     L   V     + +         Y +       +   +  +              
Sbjct: 11  VHETRFLALSVSDASDDVVGVIRAGARGYVTKAISTEDLAQAVRRVAAGDAAFSPRLAGF 70

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +       A      D    +   L+ RE E +  I+ G T  E A  L IS  TV  ++
Sbjct: 71  VLDAFGAGAGEVAVADTELDR---LSTREREVMRLIARGYTYKECASELFISVKTVETHV 127

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           ++++RK     R+    +AV   IV
Sbjct: 128 SAVLRKLQLSNRNELTRWAVARRIV 152


>gi|224823917|ref|ZP_03697026.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224604372|gb|EEG10546.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 217

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 68/223 (30%), Gaps = 14/223 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E         P   + + R++        +  +    E + A+   + R    +   +D 
Sbjct: 2   EATVLIADDHPLFREAM-RLVVSSALGEGSEIVE--CESLDAALDAVRRNPAIELAMIDI 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +        +  +                 +               +   + +   +F 
Sbjct: 59  NMPGMDGLAGLARLRQQAPT--------LPVIVVSADERHSTVEAAMSVGASGFIPKSFS 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +      +          +     +  +       +   LT +E   L +
Sbjct: 111 RDSMTEAVNAVLGGDIYLPPSLADRDTGV---PGSSPEQLQDLASRLALLTKQERCVLDY 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I  GK++  +A+ L I+ +TV  ++++I+RK    +R+ A+  
Sbjct: 168 IVGGKSNKVVAIELNIAESTVKAHVSAILRKLKVSSRTQAVIK 210


>gi|186471227|ref|YP_001862545.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184197536|gb|ACC75499.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 213

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 59/225 (26%), Gaps = 20/225 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIV 78
           ++  + L    D       L   +        + E   A   L +          +D  +
Sbjct: 4   SAGAARLILVDDHPLVRDGLRARLEAVPGFSVVGEAGNADEALALAAAYEPDLVLMDVGM 63

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L                     L   +   +           + Y       A
Sbjct: 64  RGMNGIALAALFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYVLKDSPGA 115

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   +  +                      +               LT RE + L  ++
Sbjct: 116 EIIRAIGAVLEGKTFFSEG-----------LSARLIHASATRDPIERLTPRERDILDQLA 164

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 QGLSSKQIAQRNGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 209


>gi|320660398|gb|EFX27869.1| transcriptional regulator FimZ [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 210

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D        +               
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRP------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +     F  ++ +   +             LF               
Sbjct: 48  --RPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|291281446|ref|YP_003498264.1| Fimbrial Z protein [Escherichia coli O55:H7 str. CB9615]
 gi|209777794|gb|ACI87209.1| fimbrial Z protein [Escherichia coli]
 gi|290761319|gb|ADD55280.1| Fimbrial Z protein [Escherichia coli O55:H7 str. CB9615]
          Length = 231

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D        +               
Sbjct: 22  MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRP------------- 68

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +     F  ++ +   +             LF               
Sbjct: 69  --RPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 118

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 119 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 170 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 229

Query: 245 IV 246
           ++
Sbjct: 230 LI 231


>gi|254382255|ref|ZP_04997616.1| two component system DNA binding response regulator [Streptomyces
           sp. Mg1]
 gi|194341161|gb|EDX22127.1| two component system DNA binding response regulator [Streptomyces
           sp. Mg1]
          Length = 210

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 19/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +        + E   A        +L   + +D ++      
Sbjct: 5   RLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAER----AVELAASEPVDVVLMDLQFG 60

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +   A +          R        + T  + +       + Y         +   +
Sbjct: 61  SGMHGSAATRLITARPGAPRVLV--LTTYDTDADILAAVEAGASGYLLKDAPPEELAAAV 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +                   +  D        LT RE+E L  +++G ++ 
Sbjct: 119 RTAAAGQSALAPAVA-------------LRLMDRMRTPAEALTKRELEVLQLVADGLSNQ 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 166 QISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAATRRLI 207


>gi|72162216|ref|YP_289873.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71915948|gb|AAZ55850.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 236

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 61/209 (29%), Gaps = 2/209 (0%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-DWPFDLVRCMALSEKDK 97
           +   +   +   A T  VG +  +       ++   D +V+  + P      ++   +  
Sbjct: 14  VRAGLRLIVESDAQTSVVGEAAEVRTALAAVRQLLPDVVVADAELPGGGGAVLSREVRQW 73

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
             +  Q    +                               +   +  +      +   
Sbjct: 74  AADSGQTVQVVVVASSVAEGTAFEVLQAGARGLLLRDSSPEELVRAVREVARGNAALCPQ 133

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
               +    A      ++          LT RE E L  +  G T+ EIA  L +   TV
Sbjct: 134 VTARLLDRLAALPAAPQASGPAAE-VARLTRREREVLRLLGRGLTNAEIARQLVLGETTV 192

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++  ++ K   + R  A+ Y   + +V
Sbjct: 193 KTHVGRVLAKLGLRDRVQAVVYTYEHGLV 221


>gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 203

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
                       A     + + +     +  G+  +     +    R  + G  A + A 
Sbjct: 77  FITDRRAVDEAVAAGARGFLAKSLVGEELVAGIERIAAGETLTAPARDGDTGPHAVWPAG 136

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                      D  L+ RE E L  I++G ++++IA    +S NTV +YI    RK    
Sbjct: 137 -----------DSGLSPREAEMLALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVT 185

Query: 232 TRSGAIAYAVRNN 244
           TR  A+A+A++N 
Sbjct: 186 TRPQAVAWALKNG 198


>gi|190894575|ref|YP_001984868.1| putative LuxR family transcriptional regulator [Rhizobium etli CIAT
           652]
 gi|190700236|gb|ACE94318.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
 gi|327189865|gb|EGE57000.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 265

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 70/241 (29%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCM 90
               +       + +   + +G    +     +  +     ++ S     +   D+    
Sbjct: 12  FTAHETLDGRIDQAFEAMKQIGFEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPAG-----------------MDNRYCS 132
                 +   V Q       P F    P+  T   G                 M      
Sbjct: 72  FDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTAPVTRYLSERDMSTGVTV 131

Query: 133 LTFDVARIRIGLM-LLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDF---E 185
                      +  + F +     R  L    +  LLA        S      +      
Sbjct: 132 PVHMPRGDYATVTGIRFGRNNDFERHALRYIADFNLLAHVFHEAAYSLFDRKARSVGTVR 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K   + R+ A+  A    +
Sbjct: 192 LTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|220921537|ref|YP_002496838.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219946143|gb|ACL56535.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 221

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 72/227 (31%), Gaps = 18/227 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSI 77
            S  + +    D       L   V   +    + E  G      LL R D      LD  
Sbjct: 1   MSSETTIVVADDHPLFRGALRGAVGAMLPEARIVEASGLDALTALLDREDEVDLILLDLT 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F  +  +          V+         V     +           +   + D+
Sbjct: 61  MPGVQGFSGLIYLRAQHPAI--PVVIVSANEDPVVIRRALD------FGAAGFIPKSLDI 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +   G     D            A+  K       +   LT ++V  L  +
Sbjct: 113 DEIGEAIRQVLAGGTWAPPDIA--------LSASEDKETADLMRRLATLTPQQVRVLMML 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  + R  
Sbjct: 165 SEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIASSRIG 211


>gi|153870575|ref|ZP_01999948.1| regulatory protein, LuxR [Beggiatoa sp. PS]
 gi|152072960|gb|EDN70053.1| regulatory protein, LuxR [Beggiatoa sp. PS]
          Length = 210

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E   +    L   +  +  +                    G   + +    
Sbjct: 3   IQVLLVDDHEVVRAGYRRLLENTLDIKIIAEATS---------------GEEAYSIYGKQ 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + +R +     +K   +L           +   E         
Sbjct: 48  KPDVVVMDLSMPGMGGLEAIRKI--RHYNKNAKILIFSVHENEIFLNRALEE------GA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +      I  +       L  Y        D  +    +L+
Sbjct: 100 LGYITKRSAAKVMVEAVRQVAQGKTFIGNE-------LKLYLERKITGEDSLFN---QLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++EGK+ +EIA IL +S  TV ++   I +K    + S     A+R  ++
Sbjct: 150 PREFEVFLLLAEGKSVNEIAEILTLSSKTVGHHYTHIKKKLKISSISELTRLAIRGGVL 208


>gi|13488505|ref|NP_109512.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14028259|dbj|BAB54851.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 230

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 62/232 (26%), Gaps = 28/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +       V+   +       +                          +    
Sbjct: 5   IRIAIVDDHPLFREGVTRSLSEIGGFEIVGEGATAQDAER---------------IASTV 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +A         V      +   V  T  +  T      
Sbjct: 50  QPDILLLDISMPGGGLSAVASILA---------VHPAQKIVMLTVSETNADVTTALNAGV 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +      +       +           +S +    +  +LT
Sbjct: 101 QGYILKGVGSRALAEILRNVAAGESYLSPMLSARL----LSDLQSPQSANGVADRLRQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            R+ E L  ++EG ++ E+A+ L +   TV +++  ++ K   + R+ A   
Sbjct: 157 ERQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTGVLSKLNVRNRTEAALM 208


>gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes]
 gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes]
          Length = 224

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 22/226 (9%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
                      + +     G   F  ++ +      L+    + +P +       S   +
Sbjct: 4   AAHDERMIKSALKSFANSHGFERFAYLQTEA-----LEIRTFNSYPEEWQDIYLGSHYSR 58

Query: 98  YYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              V+                             +     G+ +             + L
Sbjct: 59  IDPVITEAKRRMETFSWTADDWPARGSSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMML 118

Query: 145 MLLF----PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                    +   +L  +     +LA +      +          L+ RE  CL W ++G
Sbjct: 119 TFASSEKKAENGKVLDGQKATRAVLAIHYRLKIIAATTIVAPKRLLSPREAMCLMWAAKG 178

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ E A++ GI+  TV +Y+     K    T    +A A  + +V
Sbjct: 179 KSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGLV 224


>gi|109900326|ref|YP_663581.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109702607|gb|ABG42527.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 212

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 68/206 (33%), Gaps = 10/206 (4%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
           +  V     ++   E + +         L +   +D I+             L    + Y
Sbjct: 15  EALVGALSPLFEDIEILQSDSLDSTLMTLHENPDIDLILLDLHMPGCENFYGLIRVTQDY 74

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             +            ++       +     +   +     I   L  +      +  +  
Sbjct: 75  PEIPVAVVS---ASDSIEVVSYVMSFGAKGFVPKSSPTLMIADALKTIMSGEIWLTEELK 131

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            +I  +   + N+ +          ELT ++ + L  I +G  + +IA  L ++  TV  
Sbjct: 132 AQIAQIDGEELNLAQRI-------AELTPKQFQVLKLIHDGLLNKQIAHELNVTEATVKA 184

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           +I+++ RK    TR+ A+    + N+
Sbjct: 185 HISAVFRKLEVNTRTQAVLLLKKLNL 210


>gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 206

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 74/240 (30%), Gaps = 43/240 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +       V  L  R + +  +  +         +  L              
Sbjct: 8   KIKVLLVDDHALMIEGVKELLGREEDMHVVGTVLHLSQLQESIETL-------------- 53

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +        +    Y        +    ++            
Sbjct: 54  -NPHVIVMDIRLKDGNGLEW-----TKKMKMLYP---DCKVVILSGYNYSEYIRAAKHAG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +      + ++   +   +        D   E                    ++  L
Sbjct: 105 ASAFVVKEESILQLANAIRGAYEGFAFFPNDVDEE--------------------ENISL 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E+  L  I++ KT++ I+  L ISR TV +++++I++K    +R GA+  A++  I+
Sbjct: 145 TKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTIIKKLRVDSRVGAVVKAIKEGII 204


>gi|187919191|ref|YP_001888222.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187717629|gb|ACD18852.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 215

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 58/224 (25%), Gaps = 18/224 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           +  ++ L    D       L   +     +  + E             L    +   ++ 
Sbjct: 5   SPAIARLILVDDHPLVRDGLRARLEAVRHLEVVGEA----GNAQEALALAASAEPHLVLM 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +          + +  ++            L           + Y         
Sbjct: 61  DVGMNGMNGIALAGMFHERFPAIRVLMLSM---HDNLEYVTQAVRAGASGYVLKDSPSTE 117

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +    +                                 LT RE + L  ++E
Sbjct: 118 IIQAIGAVLEGKQFFSAG-----------LGARLIQASAMQSPVERLTPRERDILDALAE 166

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G +S +IA    +S  TV  +  ++ RK   + ++  I +AV N
Sbjct: 167 GLSSKQIAQRNDLSVRTVETHRLNLKRKLDIEGQAELIKFAVEN 210


>gi|56478702|ref|YP_160291.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56314745|emb|CAI09390.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 211

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 63/217 (29%), Gaps = 18/217 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L  T++    +  + E   G      ++        LD  +     
Sbjct: 3   RVLVADDHFLVREGLKMTIAAMQDVEVVAEATNGGEVLAAIKTCNAHVLLLDMSMPGLSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DLVR +        +  L          +              + Y +       +   
Sbjct: 63  VDLVRRVKSE-----WPGLPILVLSM---YGETQLAAKVLQSGASGYVTKGKGREILLSA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I  D   +I           +          +LT RE + L  +  GK+ 
Sbjct: 115 IRKVASGHRYIDPDLAEKILFDVRMPTASVQE---------QLTHRESQILRMLQAGKSV 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  L +S  TV+ +    M+K   +     + YA
Sbjct: 166 TQIANELSVSPKTVSTHKIRAMQKLHCQNNVELLKYA 202


>gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 206

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 25/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L   +  +  +  T            +   +   + +    LD  
Sbjct: 3   MRVLIADDHDLLRDTLIAFLGAEDGIETTP-----ASSFEEACERIRNDEAYNLVLLDYK 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +R     +  +                 T        A     +   T   
Sbjct: 58  MPGMRGLDSLREALAMKGGQ--------RVALISGEATKDVAEQALALGAAGFVPKTLPA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    +             A          +        LT RE+E L  +
Sbjct: 110 KSLVNAVRFMAMGEQY------------APIAFMTAAEEEEKHPLAERLTKRELEVLRGL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           SEGK++ EIA  L ++  T+  ++ ++ RK     R+ A   A    +
Sbjct: 158 SEGKSNKEIARDLDLTEPTIKLHMKTLYRKLEVNNRTQAAIVARDEGL 205


>gi|83954912|ref|ZP_00963590.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
 gi|83840638|gb|EAP79810.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. NAS-14.1]
          Length = 213

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 17/217 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK------LDSIVSSDWPFDLVR 88
           R++ ++  V     +  +          +   +  +         +D  +      D   
Sbjct: 3   RILIVEDIVETLRWLVEIVRSA-YPAATICTANSVRMALSKLDGQIDLALIDLGLPDGSG 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L   +K         ++   V       ++  +   + Y     + A +   L  L 
Sbjct: 62  LEILRGLNKASPS---AIKIVTTVMGDDASIVSSLSAGADGYLLKETEAAVLSRQLTQLS 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                I       I          F+        D  LT RE E LT IS+G  + E+A 
Sbjct: 119 MGLPAISPSVARRI-------MEHFRLTGPVASLDGRLTERETEVLTLISKGLRNAEVAS 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I+  TV  YI  + RK    +R+ A  +A R  +
Sbjct: 172 ALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLGL 208


>gi|118589368|ref|ZP_01546774.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118438068|gb|EAV44703.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 227

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 32/232 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
             ++  +       +          A +         T R+    E              
Sbjct: 7   RFIIADDHPLFRGALRQTLETQYPDAVIEEAGALEDVTARLEQDGE-------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     F  +     ++      V+    E    +               +
Sbjct: 53  VDLILLDLSMPGMRGFSGL-MYLRAQYSGVPVVVVSANEDPQAI-------RRAVEFGAS 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  IR  +  +         D        +                   LT 
Sbjct: 105 GFIPKSHGIDVIREAISEVMSGNMWTPPDVDLAADDGSGDLVQRLA----------TLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++V  L  +SEG  + +IA  L +S  TV  ++++I++K   ++R+ A+  A
Sbjct: 155 QQVRVLMMLSEGLLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAA 206


>gi|315604390|ref|ZP_07879456.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314096|gb|EFU62147.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 218

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 36/233 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  +++  + E     ++ +  R D L  +           R                  
Sbjct: 11  RTRVMIVDDHEIVRRGIAEIVDRDDALEVVAEAGSVADAVRR---------------ADL 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      D++  +  S   +   V+          F             
Sbjct: 56  VRPDVILVDLQLPDGTGIDIMNRLRAS-HPQILPVV-------LTSFDDDEALAESLEAG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   T   A I   +  +     ++    L              +    H     +L
Sbjct: 108 ARAYILKTVRGAEITDVIKAVADGRVLLDERTLT-------------RRRVDHEDPTADL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 155 TPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 207


>gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain-containing protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074862|gb|ADJ64261.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Herbaspirillum
           seropedicae SmR1]
          Length = 217

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L    + +  +        G     L R        LD ++      
Sbjct: 11  VLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRNGI 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+++ +   +             L   +       I         + +     A +   +
Sbjct: 71  DILKQIRKEQ--------PELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAI 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  + +      E+     +                 L+ RE + +  I+ GKT  
Sbjct: 123 RQAASGRKYVSPSLAQELANQIGFDHETPLHE--------TLSDREYQTMVMIASGKTVS 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  T++ Y + ++ K   +  +    YA++N +V
Sbjct: 175 DIAAELTLSVKTISMYRSRVLSKMKMRHNAELTHYALKNALV 216


>gi|229160795|ref|ZP_04288786.1| Response regulator [Bacillus cereus R309803]
 gi|228622643|gb|EEK79478.1| Response regulator [Bacillus cereus R309803]
          Length = 212

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVDYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKI----KCNLMESKEDECKIDKSL-FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI SI+ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSILGKTGLEHRTQIAIY 205


>gi|254449548|ref|ZP_05062985.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
 gi|198263954|gb|EDY88224.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
          Length = 204

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 25/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D+L + +  + +                +   +     +    LD  
Sbjct: 1   MKVLIADDHDLLRDMLVQFLENEGSFQTV-----AVGTFDEAAARIEADAPYDLILLDYN 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D ++                          +              +   +   
Sbjct: 56  MPGMNGLDGLKAAIAFGDGH--------RVALMSGEASKKIAEDALKAGAAGFIPKSLPA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    +    D +  I                      +LT RE++ L  +
Sbjct: 108 KSLINAIKFMAMGEQYAPIDFMTAI------------EKTPANPLADKLTERELQVLKGL 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EGK++ +IA  L I   TV  ++ ++ RK     R+ A   A    +
Sbjct: 156 TEGKSNKQIARDLEIQEPTVKLHMKTLYRKVGAANRTQAAMIAREAGL 203


>gi|300784547|ref|YP_003764838.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794061|gb|ADJ44436.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 186

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 17/188 (9%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           +              LD  +      +LV  +           +        P       
Sbjct: 15  ARARAQATGPCDLAILDLGLPDGSGIELVTELRSHGW----PRVVVLASSDDPYA----- 65

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             +        Y   +     +  G+  +   G          +                
Sbjct: 66  VRSAFQAGAQAYLLKSASPVVVTDGVRRVLEGGVYADPSVAPVLAT--------GTRVAG 117

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 EL+ REVE L  +++G+++ EI   L +S  TV ++++ I RK  T  R+  +A
Sbjct: 118 TDNTPRELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVA 177

Query: 239 YAVRNNIV 246
            A+R  ++
Sbjct: 178 LAMRAGVI 185


>gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
 gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris
           BL2]
          Length = 244

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 18/232 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L ++       +    +  +  + G ++   +          D  ++  +  + V     
Sbjct: 12  LLQLETDLSDETLDGFIEYIRHHYGLANIAYLCPSFRGRSVADPFMALTYREEWVEHYKD 71

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLP----------ENITPPAG-MDNRYCSLTFDVARIR 141
                   V         P+                     AG                 
Sbjct: 72  EGYGLIDPVHNIGARSVLPLDWARLPRAEKKVQRMFGEAADAGVGRQGLTIPVRGPTNGL 131

Query: 142 IGLMLLFPKGRI-----ILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECL 194
             L  +              +   ++  +A Y             +     +T RE+E L
Sbjct: 132 WALFSVTSDEADTEWARRRFELTKDMVHIAHYVHQRAYKLHAKEDEIDLNAITKREIEAL 191

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W +EGK+  +I++++ IS  TV  ++ S   K     R  A+  A+R  ++
Sbjct: 192 EWSAEGKSLADISILMRISVETVKAHLDSARYKLCALNRVHAVTKAIRAGLI 243


>gi|53715903|ref|YP_106580.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           ATCC 23344]
 gi|53723332|ref|YP_112317.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|76817735|ref|YP_336620.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|121598016|ref|YP_990699.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           SAVP1]
 gi|124383003|ref|YP_001025181.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10229]
 gi|126446602|ref|YP_001079535.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10247]
 gi|167725443|ref|ZP_02408679.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167744363|ref|ZP_02417137.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167821567|ref|ZP_02453247.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167829907|ref|ZP_02461378.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167908316|ref|ZP_02495521.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916665|ref|ZP_02503756.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167924513|ref|ZP_02511604.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217424235|ref|ZP_03455734.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|237507511|ref|ZP_04520226.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|254176604|ref|ZP_04883262.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|254186993|ref|ZP_04893508.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254192475|ref|ZP_04898914.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254203600|ref|ZP_04909961.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|254205467|ref|ZP_04911820.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|254264625|ref|ZP_04955490.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|52213746|emb|CAH39801.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52421873|gb|AAU45443.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 23344]
 gi|76582208|gb|ABA51682.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
 gi|121225814|gb|ABM49345.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           SAVP1]
 gi|126239456|gb|ABO02568.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10247]
 gi|147745839|gb|EDK52918.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|147755053|gb|EDK62117.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|157934676|gb|EDO90346.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697646|gb|EDP87616.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|169649233|gb|EDS81926.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|217392700|gb|EEC32723.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|234999716|gb|EEP49140.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|254215627|gb|EET05012.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|261827081|gb|ABM99049.2| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10229]
          Length = 215

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +     ++         E +      L          +D  
Sbjct: 11  ARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEAL-----TLAEALAPDLALMDIG 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L                     L   +   +           + Y       
Sbjct: 66  MQGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPA 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +                      A               LT RE + L  +
Sbjct: 118 TEIVRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDILDAL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 167 AQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|83749846|ref|ZP_00946815.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207744706|ref|YP_002261098.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83723483|gb|EAP70692.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206596113|emb|CAQ63040.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 232

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 68/245 (27%), Gaps = 25/245 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+  +++ +  +D      ++     S  +  +            +              
Sbjct: 9   ELPAIHVAIVEDDPGFLDALTQALACSPDMRLIGVAGSRAEGLRLL-------------- 54

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      D++   A              + +    F      +   
Sbjct: 55  -DGTPADVLLVDLGLPDGSGIDVIEAAARKWS--------ACSIMVSTHFGDETHVMRSI 105

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK--SYDVHWG 181
                 Y       ARI   +  L   G  I      +I                     
Sbjct: 106 EAGAAGYLLKDSSAARILDEIRSLASGGSPISPIIARQILARFRQGGARGAADEAPPASA 165

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I++G T+ EIA ++ +S  TV  ++  I  K    +++ AI  A 
Sbjct: 166 ASPLLSAREKEVLDLITKGFTTQEIAKLMALSHFTVRTFVRRIYSKLKVTSKAEAIYEAR 225

Query: 242 RNNIV 246
              ++
Sbjct: 226 TLGLL 230


>gi|297560982|ref|YP_003679956.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845430|gb|ADH67450.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 220

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 12/224 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
              +    D       L   +     +  + E   G                +D  +   
Sbjct: 7   APRVLIVDDDALVRGGLTMMLDGVHGIAVVGEARDGDEVLAAADAHRPDVVLMDLRMPRV 66

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +                 +    F T    +       + +       ARI 
Sbjct: 67  DGITATRRLRARTPPPE--------VVVLTTFDTDENILYALRAGASGFLLKDTPPARIV 118

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++ +     I+       +    A QA   +       +   L+ RE E    ++ G+
Sbjct: 119 DAVLRVAEGEPILSASVTRRLMDRTAVQAGSHERARTALAR---LSPREHEVALAVARGR 175

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T+ EIA  L +S  TV  ++++++ K     R+     A    +
Sbjct: 176 TNAEIAAQLYMSVATVKAHVSNVLAKLDMDNRTQIALLAHDAGL 219


>gi|311234756|gb|ADP87610.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris RCH1]
          Length = 250

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 27/237 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++          +  L    D ++ +  +                +      L   D 
Sbjct: 29  RILVADAQPLVREGLKALFGVMDGVSVVAEVSSGGGVLTVCDRARPDLLLLDCCLPEKDG 88

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                L  ++ +    + V  +     D     +                     A   +
Sbjct: 89  ---VLLARLIRARGGGERVLILCGHGGDCLDPAV---------------------AAGAD 124

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D   +R  +  +   G  +       +   A      +   D   G    LT 
Sbjct: 125 GLLLKEADHEEVRFAVRSVLAGGFFVSPSVAGRL---ATRCRQGWALEDRRTGGWEALTP 181

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A+A R  +
Sbjct: 182 REREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 238


>gi|313837262|gb|EFS74976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928063|gb|EFS91894.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972033|gb|EFT16131.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907187|gb|EGG26953.1| two-component system response regulator [Propionibacterium sp. P08]
          Length = 223

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 10/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L    S    M  + +   G     LV   L     +D  +     
Sbjct: 4   RLVVADDHPIMRQALAGYFSHVEEMEVVGQATNGREAVELVDQLLPDVVLMDLKMPEMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F      +       + Y     +   +  G
Sbjct: 64  LTATRMIVSRHPSI--------LVVALTTFARRDIVVEAILAGASGYLLKESEPEAVIAG 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +    + + A                  EL+  + + L  ++EG  +
Sbjct: 116 VRAVMAGQVTVSPEIARGV-VAAFSARRSGGGTHQVDMTRVELSDADDDVLKLLAEGLPN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S + V   +  + +K   ++R   +  A    +V
Sbjct: 175 AAIADELCLSESAVKQRLGHLAKKLGVRSRLEVLVRACELGLV 217


>gi|148550964|ref|YP_001260394.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
 gi|148503375|gb|ABQ71627.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 289

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 19/246 (7%)

Query: 18  QRTSFVSHLPTRSD---LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +  S +       D     A              + A+    G   F LV     +    
Sbjct: 36  RTMSSLDDASRLGDITAFEAECRQATTLDQVKSLLDAIVRQFGFRWFALVHNVDLKRTTC 95

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-------------IT 121
            +++ + +P   +  +  S       V     +    +      +               
Sbjct: 96  KALLITTYPVRWIEEIMESRLYLEDPVHAACVKTVSGLSWDQIGDYIAPNARQLSILERG 155

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DV 178
              G+ + +               +       I    L    L+     +  ++    D 
Sbjct: 156 RAHGLASGFTMPIRMRDEPDAMFTVARQGDETISSPDLLCARLIGTVAFDQARTLLGPDE 215

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ R+++C+  +++GK+  EI  ILG+SR+TV+ Y+    R+   + R+  + 
Sbjct: 216 LANVPIALSPRQIDCIDLVAQGKSDWEIGQILGLSRDTVHEYVEGARRRYGVRRRTQLVL 275

Query: 239 YAVRNN 244
            AVR+ 
Sbjct: 276 RAVRDG 281


>gi|326772693|ref|ZP_08231977.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637325|gb|EGE38227.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 230

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 69/240 (28%), Gaps = 18/240 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  +       ++ +  ++  L  +            +  L    G       
Sbjct: 8   LRPTSVMIVDDQRYARLGLALMIRKAPDLHVVAEAGDGQEALEILEGLNRSTG------- 60

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +         R MA                L    +           
Sbjct: 61  ---LPDVVLMDVRMPGMDGISATRVMARR--------FPTVKVLVLTTYDEDDYAFGALE 109

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       A++   +  +     ++      E+      +       +    +  
Sbjct: 110 VGASGFLLKDVRAAQLAQAVRAVAQGDAVLTPRVTKELIARGVPRVLPGAQREGLRERFG 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++    I+EG +++EIA  L +   +V   ++ I+ K   + R        ++ 
Sbjct: 170 VLTPRELDVARLIAEGMSNEEIAERLVLQPASVRRNVSRILAKLHLRDRVQIAVAWYKSG 229


>gi|300087378|ref|YP_003757900.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527111|gb|ADJ25579.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 247

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 74/245 (30%), Gaps = 21/245 (8%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N E + + +++   +      +  +  +  L+  +            + +  +       
Sbjct: 6   NLEQESLKVLMIGFNPVVREGLQAIIAKDPLITLVDDAPDERQALQYIKSARDR------ 59

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                      K   +V ++     +  + ++   K          L           I 
Sbjct: 60  ----------GKPVDVVLTETRNGKIDGVQVTRLIKDK--FPEVAVLVLTENLNDSYVID 107

Query: 122 PPAGMDNRYC-SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                   Y          +   +  +      +    L     +     N  K+     
Sbjct: 108 AIHAGAGGYLFLKDTTPDALTKNIHRVIEGDAQVSTVLLR--AAVENLLQNGRKTLAERT 165

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT REV+ L  +  G ++ EI+  L I+ +TV  +I +++ K   ++R+ A   A
Sbjct: 166 AEAAHLTAREVDVLRLMGNGDSNKEISSSLNITLDTVKKHIRNVIDKLQARSRTHASIIA 225

Query: 241 VRNNI 245
            +  I
Sbjct: 226 AQAGI 230


>gi|256829662|ref|YP_003158390.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578838|gb|ACU89974.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 222

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 61/228 (26%), Gaps = 27/228 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +DE     +  +       A  I  D                G     L   + 
Sbjct: 4   RVLLVEDDELLRLGLKSIIQTKKEYA--IEADT-------------ASGKQAIRLFDSNH 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +++R +           +                         N
Sbjct: 49  PDIVLLDLQLPDISGIEVLRHIKR-----IAPEIPVV---VLTSHEENELLFEALEWGAN 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         + +G+         +      ++  L                   +LT 
Sbjct: 101 CYVLKGAGPEELLLGIHYALLNEMFVSP----KLAKLIVEAYLFVNRQRKSLPPLADLTV 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           RE E +  + +GK S EIA  L IS  TV+ + ++I+ K      +  
Sbjct: 157 REKEIVRLVIDGKKSKEIADTLFISVKTVHKHRSNILEKLGLNNLADL 204


>gi|222432077|gb|ACM50924.1| ExpR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 242

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 60/196 (30%), Gaps = 24/196 (12%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
           + I+ S +P + V     ++      V+        P        I     +        
Sbjct: 43  EMIIISSYPDEWVNLYKANKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFDLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-----IGLLAAYQAN------ 171
                N Y  +  D +     L ++         D   E       +L            
Sbjct: 103 KYNIINGYTFVLHDHSDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKIISLC 162

Query: 172 -MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                           + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 163 REMIENKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|83943530|ref|ZP_00955989.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
 gi|83845762|gb|EAP83640.1| probable two component response regulator transcription regulator
           protein [Sulfitobacter sp. EE-36]
          Length = 213

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 17/217 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK------LDSIVSSDWPFDLVR 88
           R++ ++  V     +  +          +   +  +         +D  +      D   
Sbjct: 3   RILIVEDIVETLRWLVEIVRSA-YPAATICTANSVRTALSKLDGQIDLALIDLGLPDGSG 61

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L   +K      +          ++   ++  +   + Y     + A +   L  L 
Sbjct: 62  LEILRGLNKASPSAIKVVTTVMGDDASI---VSSLSAGADGYLLKETEAAVLSRQLTQLS 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                I       I          F+        D  LT RE E LT IS+G  + E+A 
Sbjct: 119 MGLPAISPSVARRI-------MEHFRLTGPVASLDGRLTERETEVLTLISKGLRNAEVAS 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L I+  TV  YI  + RK    +R+ A  +A R  +
Sbjct: 172 ALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLGL 208


>gi|293408685|ref|ZP_06652524.1| hypothetical protein ECEG_03632 [Escherichia coli B354]
 gi|291471863|gb|EFF14346.1| hypothetical protein ECEG_03632 [Escherichia coli B354]
          Length = 210

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNNSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|223934624|ref|ZP_03626544.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896579|gb|EEF63020.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 226

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 11/171 (6%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      + +R +                 +    +              + Y 
Sbjct: 54  VLMDINLPGQSGIECLRALKAE--------TPGLRVVMLTSYDDNENLFQSLTAGADGYL 105

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYDVHWGKDFELTG 188
                 AR+   L  +   G  I       +               +         ELT 
Sbjct: 106 LKRVARARLLEALRDIVAGGAPISPQMARRMVEYFHNLNMAGTPSPAQSKAADVTAELTA 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE E L  ++ G T  E+A  L IS  TV NYI  I  K    TR+ A+  
Sbjct: 166 REREVLELLARGATPKEVAAELNISWQTVRNYIRFIYDKLHVHTRTDAVLK 216


>gi|16762530|ref|NP_458147.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144019|ref|NP_807361.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213420163|ref|ZP_03353229.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213426302|ref|ZP_03359052.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213584160|ref|ZP_03365986.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213613147|ref|ZP_03370973.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647796|ref|ZP_03377849.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855646|ref|ZP_03383886.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289805447|ref|ZP_06536076.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289826435|ref|ZP_06545547.1| DNA-binding transcriptional activator UhpA [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25298776|pir||AH0963 Two-component system response regulator protein STY3992 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504835|emb|CAD03204.1| Two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139655|gb|AAO71221.1| two-component system response regulator protein [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 196

 Score = 99.6 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              + +          A+++ L+  +       +     G      +     Q    D  
Sbjct: 2   ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGS-----GREALAGLPGRGVQVCICDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+  +            +    +   V  +              + S     
Sbjct: 57  MPDISGLELLSQLP-----------KGMATIMLSVHDSPALVEQALNAGARGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D   ++                  G+   LT RE +    +
Sbjct: 106 DELIAAVHTVATGGCYLTPDIAVKLA----------------AGRQDPLTKRERQVEEKL 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G    EIA  LG+S   V+ + A+++ K            
Sbjct: 150 AQGMAVKEIAAELGLSPKMVHVHRANLLEKLGVSNDVELAHR 191


>gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 287

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 166 AAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           A+         D      F   LT RE++ L  ++EG T+ EI+ +L IS +TV +++  
Sbjct: 205 ASQGNAEPAEADDPVQAPFGETLTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIH 264

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           +  K     R+ A  +A +NN+V
Sbjct: 265 VFNKLGVNDRTQAAVWAAKNNLV 287


>gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281564|gb|ABR89974.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 213

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +++L  +       ++   T++D   ++  +         +   T               
Sbjct: 3   SVLLIDDHAMFREGLTLALTQADPTLQIHCVASGNEALQLLETET--------------S 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +       L++ +                 L         +     A   +
Sbjct: 49  ISTAMMDYYLPDIGGGALLQRLRQLR--------PGLRILALSASEDPDDVRHALASGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D   +   L  +      +                      +        LT 
Sbjct: 101 GFIHKSADSKTLFAALSSVMQGRGYLPPT---------FKLDTHDGGSNDDASLLSRLTP 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  + +G  + EIA  LG++  TV  ++++++       R+ A   A R  ++
Sbjct: 152 RQMEVLRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQATVVARRAGLL 209


>gi|309775442|ref|ZP_07670445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916831|gb|EFP62568.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 209

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 26/219 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGA----------SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           R++ +D        +  + E  G               L +        +D  +      
Sbjct: 2   RILIVDDDRLVCSSLKTILEAQGQTIVGIGCNGQEAVALYKETKPDVLLMDIRMEGMNGV 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +  S  D           LF   F      I         Y     +   I   L
Sbjct: 62  DASEEILHSYPD--------ARILFLTTFSDDEYIIRALKLGVKGYILK-QNFDSIIPAL 112

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    +   + + ++        ++ K         ++L  RE+  +  +++G  + 
Sbjct: 113 EAVYMGQNVFNTEIIAKLP-------DLLKQGVADETGCYDLNERELHFIQLVAKGLNNK 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E+A  L +S  TV NY++S++ K   + R+    +  +N
Sbjct: 166 ELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204


>gi|307546152|ref|YP_003898631.1| LuxR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218176|emb|CBV43446.1| two component transcriptional regulator, LuxR family [Halomonas
           elongata DSM 2581]
          Length = 221

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 29/233 (12%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +     + ++    +    A ++  D   + T               ++ R     
Sbjct: 8   IVADDHPLFRAALTQALRQLAPQAEIVEADTMEATTE--------------VVTRHPDAD 53

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +     F  +  + L  +     V              L           + +
Sbjct: 54  LILLDLHMPGAHGFSGL--IQLRGQTPDIPV------AVVSGSDELHVVRRAIDYGASGF 105

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              +  +A I   +  +      +  +       +A       +           LT ++
Sbjct: 106 IPKSASLALIAEAVGEILDGEVWLPEE-------MAEALGEADEEDTRFAEAIASLTPQQ 158

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              L  ++EG  + +IA  L +S  T+  ++ +I+RK    +R+ A+  A + 
Sbjct: 159 FRVLNMLTEGLLNKQIAFELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKL 211


>gi|312115840|ref|YP_004013436.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311220969|gb|ADP72337.1| two component transcriptional regulator, LuxR family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 68/229 (29%), Gaps = 25/229 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +       +      S     +  +D        + A                  
Sbjct: 6   VIIADDHPLFRDALKQTLGSSLDGVSITEVDSVEKLLDTLSA--------------SPGA 51

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +  +     +  +  +      +   +   +                   + 
Sbjct: 52  DLVLLDLKMPGEKGAASLSGL--TGLMYLRSQHPQIPVVIVSATDNTSMIRRCANLGASG 109

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S +  V RIR  +  +   G     +   E G                  +   LT +
Sbjct: 110 FISKSLPVDRIRQAVKTILDGGIWFTDEMQGEGG---------PDELGEMAARLATLTPQ 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +V  L+ + +G  + +IA  L +S  TV  ++++I++K    +R+ A+ 
Sbjct: 161 QVRVLSMLGKGLLNKQIAYELSVSEATVKAHVSAILQKLGVDSRTQAVI 209


>gi|254559044|ref|YP_003066139.1| LuxR family transcriptional regulator [Methylobacterium extorquens
           DM4]
 gi|254266322|emb|CAX22086.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens DM4]
          Length = 486

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 71/233 (30%), Gaps = 12/233 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    L     LLAR+         T    A T   G     +V     +   
Sbjct: 256 RQSEERFATAFRLTPVPTLLARLDGFT----VTSINDAFTRVFGYGEDSVVGRSPSETGL 311

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
             +  + +   + V          +    +               +       +  +  L
Sbjct: 312 WVADAARERFEEAVGR------TGFVPGQEVCLRHQDGSELDCLASAERVEIGEETFALL 365

Query: 134 TFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  R R    L      ++     +  GL+               G    LT RE 
Sbjct: 366 VLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQPGGHDGDGASPILTVRER 425

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 426 QILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478


>gi|319780553|ref|YP_004140029.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166441|gb|ADV09979.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 60/235 (25%), Gaps = 28/235 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +       V+   +       +                          L    
Sbjct: 5   IRIAIVDDHPLFREGVTRSLSEIGGFEMVGEGATAQDAER---------------LAATM 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +A     K          +   V     +         
Sbjct: 50  RPDILLLDISMPGGGLSAVASILANHPAQKI---------VMLTVSEANADVTKALNAGV 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   L  +      +       +           +  D    +  +LT
Sbjct: 101 NGYVLKGVGSRGLADILRNVAAGESYLSPTLSARL----LSDLQSQQPTDGLAERLRQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            R+ E L  ++EG ++ E+A+ L +   TV +++  ++ K   + R+ A      
Sbjct: 157 DRQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTGVLSKLNVRNRTEAALMMRE 211


>gi|296447677|ref|ZP_06889595.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296254818|gb|EFH01927.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 233

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 66/230 (28%), Gaps = 15/230 (6%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V       + LAR+I              L E        ++          D 
Sbjct: 17  RCRILLVEDERPIRERLARVIGAWPRGELLAACSTLAEA-----AAVIDRRSVDLLITDL 71

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +        +R +  +         +           +    I       + Y     D
Sbjct: 72  KLPDGHGVHAIRLLRAA-----CPEAEAMVISALADDRS---VIEAIEAGASGYLLKDSD 123

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +  L      I       I  +                    LT RE++ L  
Sbjct: 124 PIDILDAIADLLAGRSPISSTIARTI--IRRISGRAPAHEQAAAIAAERLTPREMDILHG 181

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G T  E+A  L ISR TV  +I ++ RK  +  RS A+  A R  ++
Sbjct: 182 IAKGLTYAELATHLQISRQTVPAHIKNVYRKLQSNNRSEAVYEASRRGLI 231


>gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 72/225 (32%), Gaps = 20/225 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +    T  + L R +     V       A  + +      L +    Q   LD  +   
Sbjct: 12  LIEDHKTYGERLMRALNRLDDVRCEKHFTACEDALT----ALGKNAAPQVLLLDVGLPGM 67

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +            ++   +   VF    +           Y   T  +  I 
Sbjct: 68  SGIEGLALLRQQA--------RKTALVILTVFEDDDKIFRAICAGAAGYLLKTSSIEDIA 119

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +      G  I       +  + +              +D+ LT RE E L  + +GK
Sbjct: 120 AAIRTAAAGGSPINPTIARRVLEMFSKA--------NPPARDYGLTPREQEILEVLVQGK 171

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E A  L IS  T + YI S+  K   ++RS A+A AV   +V
Sbjct: 172 TIKEAAAALKISYYTADEYIRSVYDKLQVRSRSSAVAKAVSEGLV 216


>gi|312196401|ref|YP_004016462.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227737|gb|ADP80592.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 251

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    +  + T   G                +D  +     
Sbjct: 43  QVLVVDDHPVVRSGLVGMLASQPDLRVVGTAADGYEAVARAGELRPDVVLMDLRMPRLDG 102

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +  +  D           L    +    + +   A     Y      +  +   
Sbjct: 103 VAAIERITAAGPD--------VAVLVLTTYDGDADIVRAVAAGAAGYLLKDAPLETLAEA 154

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++          +AA  A+  ++ D        LT RE E L  ++ G+T+
Sbjct: 155 VRAVARGETVLAP-------PVAARLASRLRAPDPV-----TLTRRETEVLAAVARGRTN 202

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI   L I   TV  ++  +  K     R+ A+  A+   ++
Sbjct: 203 AEIGRELFIGEATVKTHLLRVFAKLQVDDRTHAVTAALERGLL 245


>gi|302035963|ref|YP_003796285.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604027|emb|CBK40359.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 218

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 13/184 (7%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
               LV         LD  V      +  + +           L     LF     T   
Sbjct: 45  EALPLVLHHTPDIVVLDLRVQDGTGIETAKEILAH--------LPETRVLFLADALTDST 96

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            ++  A   + Y         +   +  L      +               A+       
Sbjct: 97  LLSAVATGAHGYVLQEAGAETLLHAMRSLTKGQSYLDPGVTRHTFAYLRKVADREPERGR 156

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H      L+ +E   L  I++GKT+ EIA  LG+S  TV NY+A++  K     RS A A
Sbjct: 157 HL-----LSPQERRLLPLIAQGKTNKEIAAELGLSDKTVKNYLANVYSKLHLSRRSQAAA 211

Query: 239 YAVR 242
           + ++
Sbjct: 212 FYLK 215


>gi|37522644|ref|NP_926021.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35213645|dbj|BAC91016.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 232

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 78/237 (32%), Gaps = 19/237 (8%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
             D  R + +S  P  +  L ++I     +     ++  T  V    F            
Sbjct: 7   EHDSARVAVISDHPLTAYALKKLIEECTPLDLV--LHVTTGSVSREIFTQTPI------- 57

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            D +V             +     +   L+    L   +   L E         +   + 
Sbjct: 58  -DFVVFEVRSVGPFEHQIVQNLRAWSPQLRLLVVL---LSANLEEAARFIESGADSLWTE 113

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG------KDFELT 187
              V+ +   +       R +         LL + ++    +  V  G      +   L+
Sbjct: 114 QSSVSVLLRAMRKTTLGQRWVDPACEVTSTLLESNRSPQVAAAPVVPGHRAGVTQAVALS 173

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E L  I +G ++ +IA  L +S NTV N+++ I  K +   R+ A+  A+   
Sbjct: 174 RREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMGTG 230


>gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 200

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++ L+  V             G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDALCQLLMLEDDVE-----EVHAASDGQEAIALLEKEEVDVAILDIEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  ++        +    +    F          A   + Y      ++ + 
Sbjct: 60  TGLDVLEWIRANQ--------RETKVVIVTTFKRKGYFKRALAAQVDAYVLKERSISDLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                    +  L+ RE E L  +++G 
Sbjct: 112 ATIHTVLAGQKEYSPELVEGVAF-----------------DNNPLSQREQEVLAMVAQGS 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A   + +
Sbjct: 155 TNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199


>gi|241766529|ref|ZP_04764392.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241363243|gb|EER58807.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 239

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 24/227 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D +   +     +       ++ E +  +H L            D 
Sbjct: 4   PIRILLVDDHPLVRDGVRMRLEATEHICVAGEAASVGESLPLAHAL-----APDIVLTDI 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            + +     L                 R   L   +           +     Y      
Sbjct: 59  RMPAASGIHLAAVFREQ--------FPRVRVLVLSMHDDAEYVRRAVSLGARGYVLKDAP 110

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  +   G                    +          +  LT RE   L W
Sbjct: 111 AQQLIEAIEAVHQGGCYFSPG-----------LEQLLDDAGSVARSNRSLTPREASVLQW 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +SEG+++ EIA ++G S  TV  +   + RK   + ++  + YAV +
Sbjct: 160 VSEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIEGQAALMKYAVDH 206


>gi|116073608|ref|ZP_01470870.1| possible DNA-binding response regulator [Synechococcus sp. RS9916]
 gi|116068913|gb|EAU74665.1| possible DNA-binding response regulator [Synechococcus sp. RS9916]
          Length = 244

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 83/231 (35%), Gaps = 10/231 (4%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           EQR    S L     LL     +    +    M  LT  VGA+               + 
Sbjct: 12  EQRRQGHSLLRRSRTLLGSGDRVL-LTALVSWMEGLTPLVGAATTEAELLGHMHNNTPEL 70

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           ++ +D          L++  ++   L+    +  P+   + + I       +  C+    
Sbjct: 71  LICTDVLEQGTGVSLLNQAKRHRPDLKVLLLVQRPLVRIILQAI---DAGCDGICAAELS 127

Query: 137 VAR-IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  +   L  +   G  I R     +         +  S          L+ RE + L 
Sbjct: 128 GSGSVLAALDAMDSDGHYIDRIASGVLS-----HGQLLGSGGQQSPLLAPLSLREEDVLR 182

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +G T+ +IA    +S  TV ++++S++RK A   R+ A+  A R  +V
Sbjct: 183 GLCKGMTNQQIADAFTVSTETVKSHVSSVLRKLAVTDRTQAVVKAFREGLV 233


>gi|256377313|ref|YP_003100973.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921616|gb|ACU37127.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 208

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  + E   +    +    D +  +  +    +   R   L               
Sbjct: 2   ISVLVADDHEMVRAGFRMILDAQDDITVVADVADGEAAVRRAREL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       +   +A            +   +    F T            
Sbjct: 47  RPDVCLVDIRMPGLDGLRVTELLA-----------PQAKVVVVTTFDTDENLHRALENGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +     A +   +        +I  D    +            +          LT
Sbjct: 96  SGFLTKDAGPALLVESVRAAARGDVLISPDVTLRVL--------RSWTRPSASVDVGLLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  ++ G  + EI   L +S +TV  ++A+   KT  + R    A+A R  +V
Sbjct: 148 PRERDVVREVARGLGNREIGDALHLSLSTVKTHLAAAQGKTGARNRVELAAWAFRARLV 206


>gi|187478442|ref|YP_786466.1| two-component response regulator [Bordetella avium 197N]
 gi|115423028|emb|CAJ49559.1| putative two-component response regulator [Bordetella avium 197N]
          Length = 225

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 22/219 (10%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
               +L R+      + +   +      +      L          +D  +      DL+
Sbjct: 28  RLEQVLLRLGYAPSALRFAGSLAQARTELARQTVALA--------LVDLGLPDGSGVDLI 79

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             M  ++ +    V+   T        +    +         Y     D   + I +  +
Sbjct: 80  AEMRAADSEMAILVISGWT--------SEEAILAALRAGACGYVLKERDDLEVSIAIRSV 131

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  I       +                       L+ RE + L  ++ G  + EIA
Sbjct: 132 LSGGAPIDPFLARRL------LHEFRTPLVGQADNTGPLSPREAQILRLVASGLGNREIA 185

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +SR TV  ++  + RK    +R+ AI  A    ++
Sbjct: 186 EQLHLSRYTVERHVKHVYRKLLVSSRTQAIHAARVRGLL 224


>gi|229155415|ref|ZP_04283525.1| Response regulator [Bacillus cereus ATCC 4342]
 gi|228628130|gb|EEK84847.1| Response regulator [Bacillus cereus ATCC 4342]
          Length = 212

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESREEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|315647520|ref|ZP_07900622.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276959|gb|EFU40300.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 216

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 69/218 (31%), Gaps = 22/218 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       + L  +I L+  +         T   G +   LV     Q   +D  +   
Sbjct: 8   IVEDQTIVREGLETIINLEPDMDVV-----ATTDNGQTACELVEQLRPQLVLMDIEMPVM 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                 R +  S  +           L    F      I   A   + Y    F   +I 
Sbjct: 63  NGIAATRQIKQSHPETI--------VLILTTFTEEDFIIECLANGASGYLLKDFSSNKII 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVECLTWISE 199
             +        ++      ++           ++        + + LT RE++    ++E
Sbjct: 115 TSIQEAVRGEMMLPSKVAAKLA-------ARLRTTGAPQFPAQHYNLTPRELQIAKLMTE 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            K + EIA +L I+  TV NYI+ I  K     R+ AI
Sbjct: 168 YKNNREIADMLYITEGTVRNYISVIYEKIGMNDRTKAI 205


>gi|238752716|ref|ZP_04614186.1| Response regulator uvrY [Yersinia rohdei ATCC 43380]
 gi|238709047|gb|EEQ01295.1| Response regulator uvrY [Yersinia rohdei ATCC 43380]
          Length = 166

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 53/172 (30%), Gaps = 16/172 (9%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      +  R +     D           +   ++   P            Y S 
Sbjct: 1   MDMNMPGIGGLEATRKILRFSPD--------TKVIMLTIYTENPLPAKVMQAGACGYLSK 52

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +  +    R I  D   ++ L                     L+ RE++ 
Sbjct: 53  GAAPQDVVTAIRAVHSGQRYIASDIAQQMALGQLE--------PPTETPFSCLSERELQI 104

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  I++G+  +EI+  L +S  TVN+Y   +  K            A+R+ +
Sbjct: 105 MIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGM 156


>gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv.
           mangiferaeindicae]
          Length = 254

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDLVRCM 90
           +  L    S   R++     +G    +     +              +  + P D+    
Sbjct: 12  LQALRTLDSCLDRVFGDVCALGFQSLVYDYAPVPLSLEGALITPTVFMQRNAPGDMQHVW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------------GMDNRYCS 132
                 ++  V QR T    P   +   +   P                    M      
Sbjct: 72  CEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSDMGTGVTV 131

Query: 133 LTFDVARIRIGLM----LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
                                +   +   +L    LLA    +  +       +      
Sbjct: 132 PLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQERRCHHIA 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL + ++G TS  IA  L  S  TVN ++ S  RK   + R  A+   +   +
Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|254453849|ref|ZP_05067286.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
 gi|198268255|gb|EDY92525.1| two component transcriptional regulator, LuxR family
           [Octadecabacter antarcticus 238]
          Length = 204

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 27/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D+L + +  +                  +   +   D +    LD  +   
Sbjct: 5   IADDHDMLRDILVQFLENEGGFQTVG-----VRTFDEAAVRIKADDPYDLILLDYNMHGM 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D ++      +                                  +   +     + 
Sbjct: 60  NGLDGLKAAIAFGEGH--------RVALMSGEANKQIAEDALEAGAAGFIPKSLPAKSLI 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEG 200
             +  +    +    D +  I              +       + LT RE++ L  ++EG
Sbjct: 112 NAIKFMAMGEQYAPIDFMTAI-------------KETLHNPLVDKLTERELQMLKGLTEG 158

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           K++ +IA  L I   TV  ++ ++ RK   + R+ A   A    +
Sbjct: 159 KSNKQIARDLEIREPTVKLHMKTLYRKMGVENRTQAAMIASEAGL 203


>gi|206562091|ref|YP_002232854.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038131|emb|CAR54079.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       V H  +    +        +      + A                
Sbjct: 6   IRVVLADDHPAMLVGVEHGLSSVPTIQLTGKAVNSTELIRLVEA---------------G 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +      D  +      D +   +  +++     ++        +               
Sbjct: 51  VCDVVVSDYAMPGSAHGDGITLFSYLQRNH--PAVKLV---VLTMLDNPAVIGALTRLGI 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               S +  +  +   +      G          +  L ++ +           +  EL+
Sbjct: 106 ECIVSKSDTIDHLIPAIHAAATGGSYFSPSVEKVVRTLTSHSSARAA------DQKRELS 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +   + G T +EIA  L  S+ T++   A  M K   +     + YA+ + IV
Sbjct: 160 DRELEVVRLYASGLTVNEIADQLSRSKKTISTQKARAMEKLGIEKDIDLLRYAIEHGIV 218


>gi|317472662|ref|ZP_07931977.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899839|gb|EFV21838.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 206

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 79/236 (33%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D+  ++ +  +             + +      + AL    G+    L    
Sbjct: 1   MKIIIVDDDKLVSASLKTIL------------ETSGDV--HVQALGSS-GSEAVSLYESH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  ++     +  R +     D           LF   F      I       
Sbjct: 46  HPDVLLMDIRMNGMNGIEAAREIRRKHPD--------SKILFLTTFSDDEYIIDALNIGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   I   L  +     +   +       + +   ++  +       D+ ++
Sbjct: 98  KGYILK-QDFESILPALHAVENGQNVFGNE-------IISKIPDLLSNKQHFSYSDYGIS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E+  + +I++G ++ EI+  L +S  T+ NY++ I+ K   + R+    +  ++
Sbjct: 150 EKELRLIEYIAKGMSNKEISECLFLSEGTIRNYLSVILEKLELRDRTQLAVFYYQH 205


>gi|229017120|ref|ZP_04174036.1| Response regulator [Bacillus cereus AH1273]
 gi|228744179|gb|EEL94265.1| Response regulator [Bacillus cereus AH1273]
          Length = 195

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 14/183 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       +        LD  + +    +  + +             +   L    F   
Sbjct: 20  GKEAVAYCKKYEVDIALLDVRMPNMNGVEATKIICEET---------KTKPLILTTFDDD 70

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D  RIR  +  ++    ++    L +I           K  
Sbjct: 71  EYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKI----KSNLMESKEE 126

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +    K    T RE+  +  I++G ++ EI+  L IS  T+ NYI S++ KT  + R+  
Sbjct: 127 ESKIDKSL-FTERELSIIALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQI 185

Query: 237 IAY 239
             Y
Sbjct: 186 AIY 188


>gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein
           [Stenotrophomonas maltophilia K279a]
          Length = 234

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 13/224 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMA 91
           L  M       +    +  +   +G    L+       E+    +       F       
Sbjct: 8   LLEMERARSLSAVGAVLRGIAAPLGYDRVLVFATGTGLERGTQRVYWIEGDWFGDGSDTD 67

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPA---------GMDNRYCSLTFDVARIRI 142
           L+       V +   +   P F +  + +                +      F    +  
Sbjct: 68  LAGYLHACPVNRHVLDSDAPFFWSKHQGVRGERYQIVKQPRGEGLHGLQVPVFGTTGLEG 127

Query: 143 GLMLLFP--KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            + +           R +L      A   A               L+ RE E L W++ G
Sbjct: 128 AISVAGTSIDASASARLQLAAAATAAFRAARHLVESPAELSGSA-LSTREREVLRWVAAG 186

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +   EIA  LG+S  TV N++    ++    T + A+  A R  
Sbjct: 187 RRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRG 230


>gi|94497938|ref|ZP_01304503.1| probable two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422666|gb|EAT07702.1| probable two-component response regulator [Sphingomonas sp. SKA58]
          Length = 260

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 78/237 (32%), Gaps = 18/237 (7%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWD 67
           + E +   +        ++ R++ +D        + ++        E + A+        
Sbjct: 31  DHEMQGRGMGQYMGGDAMMERVLIIDDHPLVRDGLRSVIAISFDNIEILEAASLAEAVAL 90

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L ++   D I+      D+ R   L    + + +L             + ++    A   
Sbjct: 91  LAKQDNFDLILLDLNIPDVRRLDGLKLLRQRFPILPVVMVS-GAFDRAIVQD--ALAAGA 147

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   +   + I   L  +      +                      D    +   LT
Sbjct: 148 AGFIPKSLKRSGIVDALQRIVAGEIYLPETM--------GEVPPPSVEEDDIVRRIDSLT 199

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++   L  +  G+ + +IA  LG+S  T+  ++++I++K    +R+ A+  A R  
Sbjct: 200 PQQKTVLGHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQAVIKANRVG 256


>gi|294651876|ref|ZP_06729166.1| LuxR family DNA-binding response regulator [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822199|gb|EFF81112.1| LuxR family DNA-binding response regulator [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 217

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIQETADVDEFYKRLEHGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPAIPIIVVSAHEEVSII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +                        +   LT
Sbjct: 99  MGYIPKSSHPSHIGEAIKHVLEGEIWLPPNLPTHASF-----DPRAADETALAERLQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|315502173|ref|YP_004081060.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315408792|gb|ADU06909.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 223

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 64/243 (26%), Gaps = 26/243 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +++  +D      +S +      LA +                    GA     V  
Sbjct: 4   PVRVLIVDDDPLVRGALSMILGGVPDLAVVGEATD---------------GAEVPAAVAA 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  + +            L    F    + +      
Sbjct: 49  YAPDVVLMDIRMPRVDGLAATEALRATPEPPE--------VLVLTTFDADEQVLRALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184
            + +       A I   +  +      +      ++   +                 +  
Sbjct: 101 ASGFLLKDTPPAEIVAAVRRVAAGEATLSPAVTRKLIAHVTGTAPGASPDPKRERAVRLL 160

Query: 185 E-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L+ RE E    +  G+T+ EI+  L +S  TV  Y++ ++ K     R          
Sbjct: 161 DGLSEREREVAVLLGRGRTNAEISAELFMSVATVKAYVSRLLTKLDLNNRVQVALLVQDA 220

Query: 244 NIV 246
            +V
Sbjct: 221 GLV 223


>gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 191

 Score = 99.6 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 13/190 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G+               LD  +         R ++                L   ++   
Sbjct: 13  GSEAVQRAAMMDIDLAILDIAMPRMTGLQAAREISRRAT--------GLRILMLSMYDNE 64

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y   +     +      +      +    L  +           +S 
Sbjct: 65  QYFFEALKAGAAGYVLKSVADRDLVEACRAVRRGEPFVYAGALTALITEYLR-----RSR 119

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E +  I+EG +S EIA  L IS  TV+ + A+IM+K     R   
Sbjct: 120 NGDRIPTSILTPREEEIVKLIAEGHSSREIADTLVISAKTVDRHRANIMQKLGMHDRLDL 179

Query: 237 IAYAVRNNIV 246
             +A+R  +V
Sbjct: 180 TRFAIRVGLV 189


>gi|289626301|ref|ZP_06459255.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650301|ref|ZP_06481644.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867007|gb|EGH01716.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 195

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 60/199 (30%), Gaps = 16/199 (8%)

Query: 49  MYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           +  + +   G       R        +D  +      +  R M  S        ++    
Sbjct: 8   LQVVGQADSGEESLKKARELKPDVVLMDVKMPGIGGLEATRKMLRSH-----PDIKVVAV 62

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
             C      P            Y +    +A +   + L+F   R I      ++ L + 
Sbjct: 63  TVC---EEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF 119

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                     V+      L+ RE++    I   +    I+  L +S  TVN Y   I  K
Sbjct: 120 -------QPQVNNSPFDLLSEREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEK 172

Query: 228 TATKTRSGAIAYAVRNNIV 246
            +  +       AVR+ +V
Sbjct: 173 LSISSDVELALLAVRHGMV 191


>gi|119896860|ref|YP_932073.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119669273|emb|CAL93186.1| DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 211

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
           HL    D           ++    ++ + E   G      V         LD  +     
Sbjct: 3   HLAIVDDHAIVRAGFREMLATETDLHIVFEAATGEDALARVADTGCDLLLLDLSLPGQSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D++R +                 L    F      +       + Y     +   +   
Sbjct: 63  VDVLRTLRRRG--------DSTRVLVLTGFPEDRYAVAMIRLGADGYLCKNCERDELVQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +         LLA   A      D       +L+ RE++    ++ G++ 
Sbjct: 115 IRTIAQGRRYLS---ARTAELLAGEIA-----GDGSGAAHEQLSERELQVFLRLAHGESV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV+ Y + ++ K    + +    YA+R+ ++
Sbjct: 167 SAIADALHLSIKTVSTYRSRVLEKLDVTSNAELATYAIRHGLI 209


>gi|254472068|ref|ZP_05085469.1| two component transcriptional regulator, LuxR family [Pseudovibrio
           sp. JE062]
 gi|211959270|gb|EEA94469.1| two component transcriptional regulator, LuxR family [Pseudovibrio
           sp. JE062]
          Length = 219

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 30/220 (13%)

Query: 35  RMIPLDCTVSWTMRMYALTE------------YVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           R I  D    +   M    E             +      L R +      LD  +    
Sbjct: 7   RFIIADDHPLFRGAMRQTIEKQFASVKIIEAGSLDEVTAALDREEDVDMILLDLSMPGMR 66

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            F  +     ++      V+   TE    +        +      + Y   +  +  I+ 
Sbjct: 67  GFSGL-MYLRAQYVGVPIVVVSGTEDPTTI-------RSAIEFGASGYIPKSLGIDVIQD 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G+ ++   G  I  D             N          +   LT ++V  L  +S+G  
Sbjct: 119 GVSVVLEGGVWIPPDID----------LNTVDEATKMAQRLASLTPQQVRVLMMLSQGLL 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +IA  L +S  TV  ++++I++K   ++R+ A+  A +
Sbjct: 169 NKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVIAAAK 208


>gi|196229810|ref|ZP_03128674.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226136|gb|EDY20642.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 223

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 60/236 (25%), Gaps = 28/236 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +VL  +      ++  +  R          D        +                 
Sbjct: 9   PIKVVLVEDHLMFREWLGEMLGREPGFTVCGEADNIQQGLRIIQQTA------------- 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +LV+ +                 L   +              
Sbjct: 56  --PDIAIVDITLRGSSGLELVKDIKAHGLS--------VPVLVLSMHDEALYAERVLRAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y S +     +   +  +      +      ++  L   + +  ++      +   L
Sbjct: 106 AKGYISKSEASGTLTEAIRQVLAGKIYLGE----KMTTLMLEKISNPRAIGT-TSRMDLL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             RE+E    I  G    EIA  L +   T++ Y A I  K   +  +   + A +
Sbjct: 161 ADRELEVFQLIGRGYNGREIAEQLHLGETTIDTYRARIKEKLQLRNAAELYSRAAQ 216


>gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 82/221 (37%), Gaps = 19/221 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    +I +   +        + E  G      +  ++ +    D ++     
Sbjct: 11  RRLMLVDDDPNLVILVSDYLELRGYQVTIAEN-GQKALEKLEEEVPELIICDIMMPEMDG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + LV+ +  + +  +  V+    +          + +       + Y    FD   +   
Sbjct: 70  YTLVKLIRENSQFGWIPVIFLSAKGQS------EDRVKGLNTGADVYMVKPFDPEELMAQ 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKT 202
           +              L +   L  Y+ ++  +      +   ELT  E++ +  +++GK 
Sbjct: 124 V-----------ESSLRQTERLTRYRKSVIGTSPKIKVRSGVELTPTELKVVELVAKGKG 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + EI+ I+ +S+ T+ ++I++++ KT    R+    +A+ +
Sbjct: 173 NREISKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALES 213


>gi|160881748|ref|YP_001560716.1| two component LuxR family transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430414|gb|ABX43977.1| two component transcriptional regulator, LuxR family [Clostridium
           phytofermentans ISDg]
          Length = 232

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 57/193 (29%), Gaps = 19/193 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      +   +     +D  + +    +L+R +                 L    F+  
Sbjct: 39  GLEALECINHIVPDLAMIDLNMETIGGLELIRNIRNQYDSM--------KILVLTTFYDE 90

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL----------- 165
                      N Y         I   L+ +     +I +  L  +  L           
Sbjct: 91  RNITLAMQYGANGYLLKDSGRNAILTALLNIRNGQSVIDQKVLETLTKLISDKKSSKKSN 150

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                    S         ELT RE E    I+EG T+ +IA  L IS  TV NYI+SI 
Sbjct: 151 TIASLTNLDSPQNIILPLSELTKREHEICAMIAEGFTNSQIASFLYISEGTVKNYISSIY 210

Query: 226 RKTATKTRSGAIA 238
            K     R+    
Sbjct: 211 DKLQIHDRAALAV 223


>gi|319781056|ref|YP_004140532.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166944|gb|ADV10482.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  +L  +       +  L +  D ++ +       +   ++ +                
Sbjct: 5   LTAILADDHAIVREGLKLLISAMDNISVVAEAADGEALLGQLRST--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +             R   +               +   
Sbjct: 50  RADLLILDLGMPGVTGMQFIATIRTLA--------PRLRIVVLTANVEPRTVRAALSAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +   D   +   +  +   G  + +   + +  +                    LT
Sbjct: 102 NAYLTKDGDPEELGAAIEAVKNGGTYLAKTVRFAVSDIGR---ESEPIAAQEILSPVPLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  +++G  + +IA  LGIS  T   +  ++M K +    +   AYAVR  +
Sbjct: 159 RRERQILQLVAQGMITRDIAERLGISLPTARKHRENLMGKLSLHNTAELTAYAVRLGL 216


>gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 18/224 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                      + +  G   F LV    F     +     ++           +      
Sbjct: 19  DAYFIDEICELIDKISGFRLFSLVLKTRFPVSGREVYFFDNYHESWRALYIEKKYWMIDP 78

Query: 101 VLQ-RPTELFCPVFHTL----------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           VL  RP          L             +T   G  +         +       +   
Sbjct: 79  VLHFRPVPPTFSRVWDLNFFAESNGKELWYMTQEHGFRSGVTFGLPAFSGTYGIFSVAGK 138

Query: 150 KGRII-------LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            G I          + L     +  Y  +  K     +  +   + RE+E L + ++G  
Sbjct: 139 DGPIDNDTMYKCSGEILKVYIRIIRYLISHTKYLQTFYIDEISFSHRELEVLRYTADGMI 198

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EIA  + ++++TV+ ++ +I++K   + +  AIA A     +
Sbjct: 199 SSEIASTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAALLGYI 242


>gi|302535539|ref|ZP_07287881.1| two component system response regulator [Streptomyces sp. C]
 gi|302444434|gb|EFL16250.1| two component system response regulator [Streptomyces sp. C]
          Length = 221

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 63/245 (25%), Gaps = 24/245 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    + + +V+  ++    + +  + T +  +  +                    G   
Sbjct: 1   MRVTAKVIRVVIADDEPLIRAGIRMILTSAPDIEVVAEGAN---------------GREA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          LD  +        +  +                 L    F      +
Sbjct: 46  VELALSHAPDVVLLDIQMPVMDGLSALGELGR--------AAPAVRTLILTTFGEKENVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              +     +         +   +         +       +    A      +  +   
Sbjct: 98  RALSQGGAGFLLKDSAPGELIGAVRAAAAGDAYLSPGATRHVVDQLATGPAAGRGEEARR 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  EL+ RE   L  + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A
Sbjct: 158 -RVAELSERERGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLGCENRVQAALLA 216

Query: 241 VRNNI 245
               +
Sbjct: 217 RDAGL 221


>gi|289625340|ref|ZP_06458294.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647488|ref|ZP_06478831.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867747|gb|EGH02456.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 220

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +         +     L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVAEMPGYAIIGETADGAQLSSLAQRL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    + +  +          V      L   +       +        
Sbjct: 49  PDIILLDIWMKSVDGLEALEQLFK--------VQPHCKVLILSMHTDPDMIMRALDIGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +   A       ++        + LT 
Sbjct: 101 GYLLKDTTATELEQALEALRNNERYLSPAIAHTVIERALRGTRSDRAEAAKER--YHLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIAV LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIAVGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 216


>gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 250

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 63/185 (34%), Gaps = 9/185 (4%)

Query: 64  VRWDLFQEQKLDSIVSSDW--PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
               + ++ + D ++      P   +  +          V+        P +        
Sbjct: 57  AGIQMCEQVRPDIVLIDSALDPLGHLTRLLAEGHPTMVIVVLVGEAQRTPAYLATVRA-- 114

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 +       +  ++  G+   + + R         +   +    +          
Sbjct: 115 ---AGAHGALPRWAEPRQLTDGIRRAYVERRYTDPTLAALVP--SQRTIDATDLTSGPHR 169

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  L+ RE + L  I+EG  +  +A  L +S  TV  ++ SI+RK   + R+ A++ A 
Sbjct: 170 LDMPLSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGARDRTHAVSKAF 229

Query: 242 RNNIV 246
           R+ ++
Sbjct: 230 RSGLL 234


>gi|225857575|ref|YP_002739086.1| response regulator [Streptococcus pneumoniae P1031]
 gi|225725289|gb|ACO21141.1| response regulator [Streptococcus pneumoniae P1031]
          Length = 199

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +     +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRSERLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V       LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 258

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCM 90
               +       + +   + +G    +     +  +     ++ S     +   D+    
Sbjct: 12  FTAHETLDGRIDQAFEAMKQIGFEALIYDYTPVPYDLDGAIMIPSLLKLRNIADDMHDYW 71

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT------------LPENITP------PAGMDNRYCS 132
                 +   V Q       P F              + ++  P         M      
Sbjct: 72  FDRGYFRIDPVQQVALRSTAPFFWNYDTDADTLINRFMSDDTAPVARYLNERDMSTGVTV 131

Query: 133 LTFDVARIRIGLM-LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD------FE 185
                      +  + F       R  L  I           ++    + K         
Sbjct: 132 PVHMPGGDYATVTGIRFGGNSEFERHALRYIADFNLLAHVFHETAYSLFDKKALSVGTVR 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   +EG ++ EI+ I+G S  TV  ++ +  +K   + R+ A+  A    +
Sbjct: 192 LTERERECLRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRL 251

Query: 246 V 246
           +
Sbjct: 252 L 252


>gi|116249629|ref|YP_765467.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254277|emb|CAK03896.1| putative LuxR family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 270

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 70/241 (29%), Gaps = 30/241 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS-----DWPFDLVRCM 90
               +       + +   + +G    +     +  +     ++ S     +   D+    
Sbjct: 17  FTAHETLDGRIDQAFEAMKQIGFEALIYDYTPVPYDLDGAIMIPSLLKLRNISDDMHDYW 76

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT-LPENITP-----------------PAGMDNRYCS 132
                 +   V Q       P F    P+  T                     M      
Sbjct: 77  FNRGYFRIDPVQQVALRTSAPFFWNYDPDADTLINRFMTEDTAPVTRYLSERDMSTGVTV 136

Query: 133 LTFDVARIRIGLM-LLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDF---E 185
                      +  + F + +   R  L    +  LLA        S      K      
Sbjct: 137 PVHMPRGDYATVTGIRFGRNKDFERHALRYIADFNLLAHVFHETAYSLFDTRAKSVGTIR 196

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K   + R+ A+  A    +
Sbjct: 197 LTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQAVVRATHYRL 256

Query: 246 V 246
           +
Sbjct: 257 L 257


>gi|148256507|ref|YP_001241092.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408680|gb|ABQ37186.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1]
          Length = 242

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            R++        +  +         +H +     L + ++ + ++   +  + V+     
Sbjct: 10  ERIVRTTSLSELSNVLSETRHEYELAHLVYNARHLPRTEEPNPLLLLTYDAEWVQRYKTQ 69

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAG-----------MDNRYCSLTFDVARIRI 142
           +  +   V++       P+  +  E+                   N            R 
Sbjct: 70  DYFQIDPVIKHGLASLLPLDWSNLESGEADVRAFFREARSFGVGRNGMTIPIRGPHGERA 129

Query: 143 GLML----LFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLT 195
              L       + +      + +  ++A +  +            G    L+ RE E L 
Sbjct: 130 LFSLTSNLSAGQWQTTRLAMMRDFMIIAYFFHDQAVRLSGMRDLPGMGRPLSRRERETLQ 189

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G    +IA  L +S   V  Y+ +   K    T +  IA A+  +++
Sbjct: 190 LAARGFAPKQIAADLRVSTTAVRLYLQTARTKLECTTLTQGIAKAISLDLI 240


>gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
 gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192]
          Length = 496

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 69/235 (29%), Gaps = 17/235 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    +      +  ++     +       A +E  G     L+         
Sbjct: 263 RKSEERFAKAFRMAP----VPSLVLCGDDLQVLDINQAFSETFGYQAEELLGESTVACGL 318

Query: 74  LDSIVSSDWPFDLVR----CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                +      L +                           V     + +         
Sbjct: 319 WQDGGAERLGELLAQSGSVRNVQLRLQHKDRNGLDCLVSAEAVSLNEQDCV--------- 369

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             +L     R R  + L+     ++     +   L+         +      +  +LT R
Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
 gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis
           SK121]
          Length = 239

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 14/240 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             TS +       D+ A   P                  G ++                 
Sbjct: 1   MMTSVLPDRGAGPDMFAPRSPAAGAYGILGLCAEELRARGLAYSAAAVTYRDPSTGRHRA 60

Query: 78  VSSD-WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH---------TLPENITPPAGMD 127
           ++S  +   ++  +                    PVF           +  ++  P+G  
Sbjct: 61  LASSGYDARVLEFLLEDFVADRNLFGIIREASGVPVFWQDVPRFEQVEMVTDVLRPSGYA 120

Query: 128 NRYCSLT-FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                   F    +   L + F    ++  DR+ E+   ++   +      V   +   L
Sbjct: 121 EGASVALGFSGREVTGLLHMSFADSGVV--DRVREVVAASSAACSRVVGDQVALDR-VHL 177

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ L  ++ G  + EIA  L +SR TV  ++ +I  KT T +R  A   A +  ++
Sbjct: 178 SPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237


>gi|254417726|ref|ZP_05031450.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3]
 gi|196183903|gb|EDX78879.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3]
          Length = 209

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 65/237 (27%), Gaps = 38/237 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L  R   ++ +               L               
Sbjct: 7   IRILVADDHPMMREGIVGLLGRQSDMSVVGEARDGREAIDLFERL--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D  +      +L    A+ +                P        +       
Sbjct: 52  -----RPDLTLMDIQMPELTGLEAIRQIRALDPQAAIVVLTTYP---GDALAVQALQAGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R+I  +   +I                 +     LT
Sbjct: 104 SGYLLKNCIRRDLLTTVRNVVAGRRVIAPEVAQQIA---------------IYSAGDRLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+  L  ISEG+ + EIA  L +S +TV   +  I  K     R+ A+  A++  
Sbjct: 149 EREIAILKAISEGRANKEIARRLHVSVDTVKADMKRIFSKLDVTDRTRAVIVAIQRG 205


>gi|91215054|ref|ZP_01252026.1| two-component response regulator [Psychroflexus torquis ATCC
           700755]
 gi|91186659|gb|EAS73030.1| two-component response regulator [Psychroflexus torquis ATCC
           700755]
          Length = 210

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 75/241 (31%), Gaps = 31/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + +  +D      +         L  ++       +   +              +
Sbjct: 1   MDSIRLAIIEDDTLIQESLKDYFNAQPHLECLLITASVEDFIKVIK-------------L 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +  +   LD  +      D +  +           L   + +    F           
Sbjct: 48  SKNYPEIILLDINLLGMSGIDGIPLILKK--------LPEVSIIMLTTFEDNDSIYKALC 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y S    + +I   ++++   G  +          +A   AN F    +   K  
Sbjct: 100 AGACSYLSKKTPLKKILEAILVVHLGGSYMSPA-------IARKVANHFAQKQI---KST 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+ E +T I  GK+   IA+ L IS +TV  +I +I +     +++  I  +  N 
Sbjct: 150 VLTERQKEIVTGIVAGKSYKMIAIDLFISIDTVRTHIKNIYKTLEINSKAELIRKSYDNE 209

Query: 245 I 245
           +
Sbjct: 210 L 210


>gi|282897990|ref|ZP_06305985.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281197134|gb|EFA72035.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 229

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 81/206 (39%), Gaps = 16/206 (7%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
            LT   G +   +++ +       D I+     ++LVR +  + + +   V+        
Sbjct: 29  VLTADDGENALSIIQQEHLDLMVTDIIMPRMNGYELVRRVRQNIEFRLLPVILLTART-- 86

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                  E I       + Y    F++  +   +  L  + +II  +      +   +  
Sbjct: 87  ----KTQERILGYQSGCDLYLPKPFELEELAAAVRNLLERSQIIQSEYCLSSQITGGFSP 142

Query: 171 NMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           +           +            ++ RE E L  ++ G ++ EI   L +S  TV  Y
Sbjct: 143 DDKTRSLSIPRTETLNHPDSHILMSISTREREVLELLTHGLSNAEIGSKLYLSPRTVEKY 202

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           ++S++RKT++  R+  + +A++++IV
Sbjct: 203 VSSLLRKTSSNNRAELVRFAIKHDIV 228


>gi|325286932|ref|YP_004262722.1| LuxR family two component transcriptional regulator [Cellulophaga
           lytica DSM 7489]
 gi|324322386|gb|ADY29851.1| two component transcriptional regulator, LuxR family [Cellulophaga
           lytica DSM 7489]
          Length = 215

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 79/238 (33%), Gaps = 29/238 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+++  + +     +  +   +     ++           +    +  GA+   L+    
Sbjct: 5   NLIIADDHKMFIDGLMSILNDAPEFNVILTAKNGAQVVKYL----DINGAADIHLL---- 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      +L   +          V+     +   +  TL           +
Sbjct: 57  ----ITDLTMPEVDGIELNNIVKERFTSLKTLVV--SMHIDGTMIDTL------IRNNVD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   +  +    +    + + +    A +             K+  LT 
Sbjct: 105 GYVPKNAEKEELLEAIRSIVKGEKYFSSE-IKKAYTDAMFA--------SKKEKEISLTN 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  I+E  T+ EIA  L +S++T+ +Y  +++ K   K  +G   +A++  ++
Sbjct: 156 REKEVLKLIAEEYTTQEIADELFLSKHTIESYRKNLISKLNVKNLAGLTKHAIKIGLL 213


>gi|325067923|ref|ZP_08126596.1| two component response regulator [Actinomyces oris K20]
 gi|326773871|ref|ZP_08233153.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326636010|gb|EGE36914.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 224

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 17/227 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE------ 71
                V+  P     + R+  +D        + A                          
Sbjct: 1   MTVPNVTDAPAAPSQVLRVAIVDDDPFVLQALRAYLSSDERIEVTSTFSRAADALAFLHK 60

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            ++D +++     ++     L+   + +    R   +    F      +   A   N + 
Sbjct: 61  IRVDVLLTDVRMPEMDGLELLTRVRRQWP---RTAVVVLTSFDDDEAMVAALAQHANGFL 117

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   ++     G  I       +           +S       D   T  E 
Sbjct: 118 LKDASPEEIIRAVIAASAGGTTISPAATSRL------VTRHLRSPQTAQAPDV--TEAEQ 169

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             LT + EG ++ EIA  L ++ +TV  +++ +M+K    +R   + 
Sbjct: 170 AVLTLLCEGYSNAEIAEQLVVAESTVKTHVSHLMKKYDVPSRLKLVV 216


>gi|92115904|ref|YP_575633.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91798798|gb|ABE61173.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 231

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 31/235 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             IV+  +       +      S + A++         T R+    +             
Sbjct: 14  TRIVIADDHPLFRDAL-RQAVASIMPAQIDEAGTFEELTARLEQEAD------------- 59

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      V+   ++    +  ++           
Sbjct: 60  -VDLILLDLSMPGISGFSGL-IYLRAQYSAIPVVVVSASDDVATIRRSMDF-------GA 110

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +      V  +R  ++ +      I  D            A           +   LT
Sbjct: 111 SGFIPKRLGVDALRTAILKVIEGDIWIPPDV--------DLSAAADPEMTRLRDRLVTLT 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++V  L  +SEG  + +IA  LG+S  T+  ++++I++K    +R+ A+  A R
Sbjct: 163 PQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIAAAR 217


>gi|302546840|ref|ZP_07299182.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464458|gb|EFL27551.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 225

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 26/242 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E + V +V+  +++     +  +      L  +                    G + 
Sbjct: 1   MDSEREPVRVVIVDDEQLVRMALRLVIDGEPDLTVVAEAAD---------------GDAA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +V         +D  +         R +                 L    F +    +
Sbjct: 46  LTVVDEQRPDVVLMDVRMPGRDGLSTTRELLTRPAPP--------RVLMLTTFDSDDLVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYD 177
                    +        +I   +  +     ++       +   A           S +
Sbjct: 98  GALRAGALGFVLKDTQPPQILDAVRTVADGNPVLSPAATARVIAAATGPQSSHARSSSRE 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE++    I++G  + EIA  L IS  TV  +  S+  K     R    
Sbjct: 158 AARKQLSTLTERELDTARAIADGLGNPEIAQRLHISIATVKAHTGSLFAKLTVDNRVQIA 217

Query: 238 AY 239
             
Sbjct: 218 LL 219


>gi|302529365|ref|ZP_07281707.1| response regulatory protein [Streptomyces sp. AA4]
 gi|302438260|gb|EFL10076.1| response regulatory protein [Streptomyces sp. AA4]
          Length = 211

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 65/241 (26%), Gaps = 35/241 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + +VL  +     + +  L   +  +  +                    G     L  
Sbjct: 5   QPIRVVLCDDHAMVRAGLRALLAGAGGIEVVGEAST---------------GQEAINLAA 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D V  +                 L    + T  +       
Sbjct: 50  ALRPDVVLMDLQL--GDGMDGVEAIRRLRAAAEPP-----RVLVLTTYDTDADITRSIEA 102

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +         +          +A       ++          
Sbjct: 103 GATGYLLKAESADELYAAIRAAAAGRTALS-------APVADRMMAQLRAPRPA------ 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  +++G  + EIA  L IS  TV  ++  I  K    TR+GA+A A    +
Sbjct: 150 LTDRERDILEQLAQGLGNREIARRLFISEATVKTHLGRIYEKLGVDTRAGAVAVAKEQRL 209

Query: 246 V 246
           +
Sbjct: 210 L 210


>gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 208

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 22/217 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   V     +  + E    A           +   +D  +    
Sbjct: 3   TSVMIVDDHEVVRRGIADMVDAAGDLRVVAEAGSVADAVRRGTLTRPEVALVDLQLPDGT 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++R +A    D    VL          F       +        Y   T   A I  
Sbjct: 63  GIEVIRRLADESSDTRCVVL--------TSFDDDDALASAIEVGARAYVLKTVRGAEIVD 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     ++    L              +    H      LT  E   L  ++EG T
Sbjct: 115 VVRAVAAGRVLLDERSLT-------------RRRAAHEDPTSALTPSERRVLELVAEGLT 161

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +IA  LG++  TV N++ S++ K   + R+ A+A+
Sbjct: 162 NRDIAERLGVAEKTVKNHVTSMLSKMGLQRRTQAVAW 198


>gi|163751244|ref|ZP_02158472.1| DNA-binding response regulator, LuxR family protein [Shewanella
           benthica KT99]
 gi|161328958|gb|EDQ00032.1| DNA-binding response regulator, LuxR family protein [Shewanella
           benthica KT99]
          Length = 219

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 31/237 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    +           D   +    +    +        
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALSGPFPNTNWFEADSADALQSLLENKQQAY------ 54

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +           + L        V+                    
Sbjct: 55  -------DLVMLDLQMPGSHG--YSTLIHLRTHFSDLPVIIISAHEDNMTI------SRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWG 181
                + +   +  +  +   L  +      +     + EI   A+              
Sbjct: 100 VHYGSSGFIPKSSSMETLAAALTSVLDGDIWLPDHAEIQEIKEDASALVAR--------- 150

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 151 KLADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|260063731|ref|YP_003196811.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
 gi|88783176|gb|EAR14349.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
          Length = 226

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 78/246 (31%), Gaps = 35/246 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           ++ + + +N+++          +  +      +  +  +  T +    +   T       
Sbjct: 12  IDKQTKMINVLIADNHPVVRLGIKQVLENDGDIQVLGDVGTTTALFQMLSKAT------- 64

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D ++      ++     L +    Y  +Q                +
Sbjct: 65  -------------PDVLILEMDIPEINGIATLRKMKDEYPEVQVLIYSGQS---EDVYAL 108

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +        Y S + +++ +   +  +   G  I  +    +          F       
Sbjct: 109 STIRAGARGYLSKSAELSYLADAVHKVSDGGMFITNELAQRLA---------FDEGTQKP 159

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-- 237
            + F  L+ REVE L  ++ GK + E+A+ L ++  TV+ Y A +M+K         +  
Sbjct: 160 RRFFRKLSTREVEVLKMLASGKRNKEVALGLNLNEKTVSTYKARLMKKLNVDNMVDLLQQ 219

Query: 238 AYAVRN 243
           A A+  
Sbjct: 220 AKALEL 225


>gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia
           R551-3]
 gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas
           maltophilia R551-3]
          Length = 234

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 60/221 (27%), Gaps = 13/221 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI-VSSDWPFDLVRCMALSE 94
           +   D        + ++   +G    L+       E+    +               L+ 
Sbjct: 11  LERADSLTEVGAILRSVAAPLGYDRVLVFATGTGLERDAQRVYWIEGDWLGDGSDTDLAR 70

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPA---------GMDNRYCSLTFDVARIRIGLM 145
                 V +   +   P F +  +                  +      F    +   + 
Sbjct: 71  YLHACPVNRHVLDSDAPFFWSKRQGARGERYQVVKQPRGDGLHGLQVPVFGTTGLEGAIS 130

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTS 203
                           +  +A       +             L+ RE E L W++ G+  
Sbjct: 131 FAGA-AVDASARARLLLEAVATAAFRTARRLAEAPAELPVGALSAREREVLRWVAAGRRQ 189

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  LG+S  TV N++    ++    T + A+  A R  
Sbjct: 190 AEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRG 230


>gi|309777042|ref|ZP_07672011.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915252|gb|EFP61023.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 224

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 16/224 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV-GASHFLLVR-----WDLFQEQKLDSIVSSDWPFDL 86
           +  ++  +        +  +   + G     L             ++ D I+       +
Sbjct: 1   MINIMIAEDQQLIRESLKIILNSIEGFHVVSLAGNGEDVLRQIAVKQPDIILMDIRMPVM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     + Y  +Q         F      +   A   N Y      +  ++  +  
Sbjct: 61  DGVECTRIVKETYPDIQVL---ILTTFLDDDFVMKALAYGANGYILKGVSLHELKHAIET 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVECLTWISEGK 201
               G +I  D      ++  +        +    K        L  RE + +  I+ G 
Sbjct: 118 TIRGGSVIHPDV--GAKMITMFHQERKLKQENQEHKRVNAYVRRLNAREWDIICQIAHGL 175

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  +  +  T+ NY++ I+ K   + R+    + +++ +
Sbjct: 176 SNKEIAEKMIFTEGTIRNYLSIILEKLQLRDRTQLAIWYLQSGM 219


>gi|311742184|ref|ZP_07715994.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314677|gb|EFQ84584.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 219

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + + L  + E     +  L      +  +           ++  L            
Sbjct: 9   ADPIRVFLLDDHEIVRHGLRGLLESESDIVVVGESGRAADAPDQIIDLG----------- 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD+ +      ++ R +  +  +           +    +       T   
Sbjct: 58  ----PDVAVLDARLPDGSGIEVCREVRSARPEI--------KVVILTSYDDDEALFTAIM 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +     ++                   ++         
Sbjct: 106 AGASGYVLKQIRGNDLVDAVRRVAEGQSLLDPAVT-------LQVLERIRT-GPVTDPLA 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT  E   L  I +G T+ +IA  + ++  TV NY++ ++ K   + R+ A   A +N
Sbjct: 158 RLTPTERRILHLIGDGLTNRQIAEEIDLAEKTVKNYVSHLLNKLGLERRTQAAVLATKN 216


>gi|330985150|gb|EGH83253.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 215

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L       AR++  +       R+    ++             
Sbjct: 5   ILIADDHPLFRSALHQALSIGLGPEARLVEAESIAQLESRLGEKADW------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASIVVRSREFGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +   G                   ++             LT 
Sbjct: 103 GFIPKSSPLEVIQQAVRTVLDGGVWWPPQV--------NEVISVSDEAKAASAGLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 155 QQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 205


>gi|255621530|ref|XP_002540217.1| Transcriptional regulatory protein uhpA, putative [Ricinus
           communis]
 gi|223498115|gb|EEF22167.1| Transcriptional regulatory protein uhpA, putative [Ricinus
           communis]
          Length = 179

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 48/175 (27%), Gaps = 22/175 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +L         +           L   +       +        
Sbjct: 20  IDLTLMDINMRGINGIELTALFHARHPEI--------AVLILSMHDKAEYVMQSIQAGAR 71

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         I   +  +   G         ++                       LT 
Sbjct: 72  GYVLKDAPSQDIVHAIETVRSGGIYYSAALARQL--------------TQPLPPRELLTQ 117

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  I+ G+++ +IA  L +S  TV  +  +I RK     ++  I +AV +
Sbjct: 118 REREVLMHIANGESNKQIARELDLSVRTVETHRLNIKRKLNIDGQAELIKFAVES 172


>gi|150249482|gb|ABR67760.1| CmnR [Saccharothrix mutabilis subsp. capreolus]
          Length = 237

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + E     +  +  R D +  +  +        R+                 D
Sbjct: 14  IAVLLADDHEVILDGLRAVLARDDAITVVGAVHGVPELLDRIGR---------------D 58

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 + + +     F + R +A                +      +    ++  A   
Sbjct: 59  QPDVVLVGASLLRVDDFRVARLLAGQ------------RVVVATQDDSDELLVSAIAAGV 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y  L          +  +   G  +       +         +    D        LT
Sbjct: 107 SGYLPLGSPGEEFPRAIRAVAEGGAYLPAHVTKRV----FESFQIIPLPDPSAPALLSLT 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I +G+++ EIA    +S  TV ++++ ++ K   + R  A   A R  +V
Sbjct: 163 EREGQVLRAIGQGRSNREIAREFEVSETTVKSHVSRVLAKLELRDRVQAALLAWRLGLV 221


>gi|148553617|ref|YP_001261199.1| two component LuxR family transcriptional regulator [Sphingomonas
           wittichii RW1]
 gi|148498807|gb|ABQ67061.1| two component transcriptional regulator, LuxR family [Sphingomonas
           wittichii RW1]
          Length = 252

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 18/236 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV--GASHFLLVRWDLFQE 71
            +   R + +         + R++ +D        + ++      G   F     D    
Sbjct: 20  SDHPLRGNMMQDDMVADATMERILIIDDHPLVRDGLRSVIAVTFDGCEIFEAASMDEALA 79

Query: 72  QK-----LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D I+      D+ R   L      Y +L                        
Sbjct: 80  TLEKQSNFDLILLDLNIPDVKRLDGLRLLRSRYPILPVVMVSG---AFDRAIIQEALGAG 136

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   +   + I   L  +      +    + E   +A+ +A++ +  +        L
Sbjct: 137 AAGFIPKSMKRSLIVDALHRIVSGEIYL-PAAIGEPAEIASEEADILQRIES-------L 188

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T ++   L  +  G+ + +IA  L +S  TV  ++++I++K    +R+ A+  A R
Sbjct: 189 TPQQKTVLVQLVNGRLNKQIAHDLSVSMTTVKAHVSAILQKMGVFSRTQAVIKANR 244


>gi|238062966|ref|ZP_04607675.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237884777|gb|EEP73605.1| LuxR family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 279

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 62/232 (26%), Gaps = 20/232 (8%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
             + R           D +  M+  +   +      +     G     L          L
Sbjct: 58  RSQIRVCLADDHTLLRDGIREMLSTEPEFAVVGEASS-----GPEAVALAVRLRPDVLLL 112

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       ++R +  +  +           +   +                 Y   T
Sbjct: 113 DVEMPGPGAAAVIRQVRRTASE--------TRVIVLTMHDDPDMVHELLEAGAVAYLLKT 164

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +  +           +  ++                   LT RE+E L
Sbjct: 165 ILRDDLVAAVRSVVRRP------TQSVLLAVSRETVERLDRQKPRTNG-TPLTSRELEVL 217

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +E  ++ +IA  L I+  TV  ++ +I  K    +R  AI  A    ++
Sbjct: 218 RLTAEAMSNAQIASRLFITEATVKRHLTNIYAKLQAVSRVDAIRKATAARLI 269


>gi|182412194|ref|YP_001817260.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839408|gb|ACB73660.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 214

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 16/213 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGA-----SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           ++   +    +      +           +       +     +V  DW       +   
Sbjct: 3   VEDQTAIRQMLVTFVAAMPRFTVVGEAGSVEEALRVADATRPQVVVLDWMLLEGLGLEFL 62

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
            + +     Q           T        +     Y   T   +     L  +      
Sbjct: 63  RQVRSDPPPQVLVFSANT---TELAVREALSAGARGYVEKTASFSEFTAALNAVAEGQTY 119

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           I       +  +A +                +++ RE + L +++EG +S EIA  LG+S
Sbjct: 120 IGPAVARAVRRMAGH--------PERIDSKLDISTRERDVLRFVAEGLSSKEIAQRLGLS 171

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV N+ ASI R+T  ++ +    +A R  +V
Sbjct: 172 VRTVENHRASITRRTGLRSVAQLTLHAARLGLV 204


>gi|126457628|ref|YP_001074204.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|167848116|ref|ZP_02473624.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167896673|ref|ZP_02484075.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167921299|ref|ZP_02508390.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|237508999|ref|ZP_04521714.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242311210|ref|ZP_04810227.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|126231396|gb|ABN94809.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|235001204|gb|EEP50628.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei MSHR346]
 gi|242134449|gb|EES20852.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
          Length = 220

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + + H       +  +     +      +                  
Sbjct: 6   IKVVIADDHPAVLTGLLHALAPVSSIEVVSACKNSTELLAALNEY--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +  D   D +   +  ++      L   T +  P            +   
Sbjct: 51  PCDVVISDYNMPDDNFGDGISLFSYIQRRYPSTRLIALTMISNPAIIH-----NLISHGI 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S + ++  I   +   + KG  +      E  + + +              + +L+
Sbjct: 106 STVLSKSDEIGHIIAAIHASYAKGSYLSP--TMETIVNSGH--------GKSPDGEVQLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +   + G + +EIA  L  S+ T+++  A+ MRK    +    + YA++  +V
Sbjct: 156 PREIEVVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGVNSDIDLLKYALKAKLV 214


>gi|76818490|ref|YP_336787.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|167826598|ref|ZP_02458069.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167913356|ref|ZP_02500447.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|254195295|ref|ZP_04901723.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254264100|ref|ZP_04954965.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|76582963|gb|ABA52437.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|169652042|gb|EDS84735.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254215102|gb|EET04487.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 220

 Score = 99.2 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + + H       +  +     +      +                  
Sbjct: 6   IKVVIADDHPAVLTGLLHALAPVSSIEVVSACKNSTELLTALNEY--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +  D   D +   +  ++      L   T +  P            +   
Sbjct: 51  PCDVVISDYNMPDDNFGDGISLFSYIQRRYPSTRLIALTMISNPAIIH-----NLISHGI 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S + ++  I   +   + KG  +      E  + + +              + +L+
Sbjct: 106 STVLSKSDEIGHIIAAIHASYAKGSYLSP--TMETIVNSGH--------GKSPDGEVQLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +   + G + +EIA  L  S+ T+++  A+ MRK    +    + YA++  +V
Sbjct: 156 PREIEVVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGVNSDIDLLKYALKAKLV 214


>gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 201

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I L  + E   + +  +    +    +                    G + F+ +   
Sbjct: 2   VRIYLAEDQELLNTALKMILNLEEDFEVIGSATD---------------GKTAFVDIIRL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD         ++ R + L   D           +    F              
Sbjct: 47  KPDIVLLDIETPEMTGLEIARQIQLMNLDI--------KIVILTTFAQESYFKQAIQSQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   L  +     I   +                 S      K+  LT
Sbjct: 99  NGYMLKDSPSDELIRSLYSILAGDTIFSHE---------------LVSQSFVTCKN-PLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  + +G  + +IA  L +S  TV NYI++I+ KT TK+R  AI  A     +
Sbjct: 143 DREIEILNLLKKGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLANEQGWI 201


>gi|160875718|ref|YP_001555034.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160861240|gb|ABX49774.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315267907|gb|ADT94760.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 220

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    T +   A+    D   +    +             
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSAEALQSVLD------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            VR   +    LD  +           + L        V+             +      
Sbjct: 49  -VRSIDYDLVLLDLQMPGSHG--YSTLIHLRSHYPDLPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      + +    EI  +     +          K
Sbjct: 100 IHYGSSGFIPKSASMETLKEALSAVLFGDIWLPKG--TEIISIDDDAVDKMA------SK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|56478683|ref|YP_160272.1| two-component system response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56314726|emb|CAI09371.1| Two-component system response regulator [Aromatoleum aromaticum
           EbN1]
          Length = 210

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S    M+   E   GAS    +R   F    +D  ++    
Sbjct: 3   ELLIVDDHTIFRSGLRRMLSDEADMHVADEASDGASALAKIRSGKFDVILMDINMAGRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +                 +   ++      +       N Y S   +   +   
Sbjct: 63  LDTLESLRAER--------PELPVIMLSMYPEEQYAVLALRARANAYLSKDVEPQELLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   GR +       + +    Q +  +    H     +LT RE++ +  I  G + 
Sbjct: 115 IRHVVGGGRYVSPRSAANLLM----QMDRAREGAPHE----KLTAREMQVMMKIVRGMSL 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ V + +S  TV+ Y   I+ K +  + +  + YA+RN ++
Sbjct: 167 TDVGVQMCLSVKTVSTYRMRILEKLSLSSNAELVQYAMRNGLL 209


>gi|150018604|ref|YP_001310858.1| two component LuxR family transcriptional regulator [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905069|gb|ABR35902.1| two component transcriptional regulator, LuxR family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 220

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 10/185 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++  +      +D  +      +L+      +    Y  ++         F+  
Sbjct: 38  GKEALDILEKEQVDIALVDLNMEGMSGQELI-----LKVKTTYPKMKIL---VLTTFYDE 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +       + Y         I  G+  +     ++    +  +  + +  +N     
Sbjct: 90  ENIVKAVMHGADGYLLKDAGTKVIVQGIFNVMNGQSMLDSKVMTALANIMSKCSNENTDK 149

Query: 177 DVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + +   D    LT RE+E    +S+G T+ +IA  L IS  TV NYI++I  KT  K R+
Sbjct: 150 NKYHNVDLLKNLTEREIEICQLLSDGYTNSQIAEFLYISEGTVKNYISTIYDKTEIKDRT 209

Query: 235 GAIAY 239
                
Sbjct: 210 MLALK 214


>gi|86608718|ref|YP_477480.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557260|gb|ABD02217.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 198

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 57/222 (25%), Gaps = 29/222 (13%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     + L   +             G+      R        LD  +      
Sbjct: 6   RVLIADDHPLFRLGLKFALQAQGFEVVAEAETGSQAVQYCRSCPIDVAILDVRMPDGDGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +          V+          F                Y S   D A +   +
Sbjct: 66  AACQQITELGL----PVVVVMMTT----FQEPGLIEAARRAGAKGYLSKETDPAELARVI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +             E+                      +LT RE+  L  + EG  + 
Sbjct: 118 RQILSNPERDWLPARQEL---------------------PKLTPRELCVLQLMKEGLANK 156

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  LG+S  TV  Y ++  RK     R  A+  A +  I+
Sbjct: 157 QIARRLGLSIETVKEYASTAYRKLDASDRVTALLKAQQLGIL 198


>gi|126643311|ref|YP_001086295.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 175

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 13/169 (7%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     F  +     ++      ++    E    +           A    
Sbjct: 7   PDLVLLDLNLPGASGFSAL-VYVRAQYPSIPIIVVSAHEEASII-------QRAIAHGAM 58

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +   + I   +  +      +  +    I L                 +   LT 
Sbjct: 59  GYIPKSAHPSHIGEAIRQVLDGEIWLPPNLPSNINL-----DPRAADETALAERIQSLTP 113

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 114 QQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 162


>gi|253690507|ref|YP_003019697.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|34398218|gb|AAQ67211.1| transcriptional regulator [Enterobacteriaceae bacterium A2JM]
 gi|251757085|gb|ACT15161.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 242

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 24/196 (12%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
             I+ S +P + V     ++      V+        P        I     +        
Sbjct: 43  QMIIISSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFDLSK 102

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPKG-----RIILRDRLWEIGLLAAYQAN------ 171
                N Y  +  D       L ++            + ++     +L            
Sbjct: 103 KYNIINGYTFVLHDHGDNLAMLSIIVDSSYPDNVEKFIEEKKDTFQMLLIDAYEKIISLC 162

Query: 172 -MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                           + RE E L W S GKT  E+A+ILGI  +TV  +I ++++K   
Sbjct: 163 REMIESKKQLNNKEMFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGV 222

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 223 LNAKHAIRLGVELQLI 238


>gi|307315516|ref|ZP_07595067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306898770|gb|EFN29428.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 234

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 22/227 (9%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                   +   +  L   +G  ++  +           +   S++  +           
Sbjct: 13  AVARTREMFNGALTELARELGFEYYAYLNLQPVG-----TFAVSNYSPEWQDRYFSKSFS 67

Query: 97  KYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIG 143
           +   V+Q                                  G+ +          R    
Sbjct: 68  EIDPVVQIAKSTMRAFTWSSENTRKVKSRRVRQFYLDAAGFGIRSGITIPVATAFRRIAM 127

Query: 144 LMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           L +   K  ++L            +   +        +        +T ++   L W SE
Sbjct: 128 LTIASHKPSLLLNLDIDPVAAATAVAQLHVRIEQAQIEPTAKPSIRMTAKQALMLKWSSE 187

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK+  EIA I  ++   VN ++ +  RK    T++ A A A +  ++
Sbjct: 188 GKSMSEIATIENMTYANVNFHMNNARRKLGASTQAQATALATKLRLI 234


>gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
 gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116]
          Length = 217

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D  ++  GL  +      + RD L  +        +     D     + ELT 
Sbjct: 103 GLFYFEDDFDKVIRGLKGILSGENWLSRDILNRLVGYLVNLNHTVTELDTKL--EIELTR 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  A+A+A RN
Sbjct: 161 REMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKRN 215


>gi|171060520|ref|YP_001792869.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170777965|gb|ACB36104.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 224

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 32/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I L  +          L      L+ +       S    +               R   
Sbjct: 18  RIALADDHAIVRVGYRRLLELEPDLSVVAEYADADSAAADL------------CQARRTA 65

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      DL+R +           L+           +             
Sbjct: 66  VDLLILDLSMPGRSGLDLLRQLQRDR-----PALKVLMVSM---HDSAALVGQCLGAGAC 117

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + + + D   +   +        +              +  +             +LTG
Sbjct: 118 GFVAKSSDPQALIGAVRQALRGEVV------------DTHGPSAPPRAGRRPLPHEQLTG 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  +  G   +  A  +G+S  TV+NY   I +K         + YA ++ ++
Sbjct: 166 RELEVLQLLLAGLGVEVAAARIGLSEKTVSNYQTQIRQKLGVANSIELVHYARQHGLM 223


>gi|254501452|ref|ZP_05113603.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222437523|gb|EEE44202.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 236

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 7/221 (3%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +   +        + +    +GA+H L+    +      + +    WP      +  
Sbjct: 14  LRAISEANAAHHVLDILESNLRRMGATHILITGLPMPNRPIDNLVQRFRWPDQRNDGIES 73

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPE------NITPPAGMDNRYCSLTFDVARIRIGLML 146
           +      + L            T+        ++   AG  ++   +           + 
Sbjct: 74  TSLSANDSALMLGLGSNRARIWTITAGDMEHSDLMASAGEGSQIVVVPVTELYPFQAFVF 133

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDE 205
                  + +  L  +  L+A   +  +   V  G +   L+ RE + L   + GKT+ E
Sbjct: 134 ASGPALQVSKYDLSNLEALSAAAISRLRELGVVSGQRPGALSTRERKVLELTAYGKTAGE 193

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 194 IADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 234


>gi|104783098|ref|YP_609596.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95112085|emb|CAK16812.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 216

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 68/231 (29%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    +        R++ +         +    ++             
Sbjct: 6   ILIADDHPLFRSALRQAVTLGLGPDVRLVEVASIAELETSLTEKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEAAVVVKSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + ++ +I+  +  +             ++        ++             LT 
Sbjct: 104 GFIPKSSELGKIQEAVRNVLDGDVWWPPQAFEKV--------DVSAEAKAASEGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|326775181|ref|ZP_08234446.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326655514|gb|EGE40360.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 219

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 51/204 (25%), Gaps = 17/204 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +        L E  G      L          +D  + +    
Sbjct: 11  LLIVDDHPVVRDGLRNMLESADGFTVLGEASGGKEAVELTLRTDPDVVLMDLRMPTGSGV 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +  +             R   L    + T  + +         Y         +   +
Sbjct: 71  EAIAELTRRGV--------RARVLVLTTYDTDSDTLPAIEAGATGYLLKDALRDELYGAI 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +                    D  L+ RE++ L  +  G ++ 
Sbjct: 123 RAAAAGRTVLSPAVATRLVT--------AVRNPAAPPADDPLSTRELQILEHVERGASNR 174

Query: 205 EIAVILGISRNTVNNYIASIMRKT 228
           EIA  L IS  TV  ++  I  K 
Sbjct: 175 EIARALFISEATVKKHLTHIYDKL 198


>gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 234

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 10/222 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMAL 92
             +        +   + A  ++    +F L R            +V ++ P   V     
Sbjct: 13  PELSRAINRTDFFRLLKAAAQHYHFDNFALARISEASAPFGERDVVITNVPERRVGLFIA 72

Query: 93  SEKDKYYNVLQRPTE-LFCPVFHTLPENITPPAGM-----DNRYCS--LTFDVARIRIGL 144
           + ++   NV  +  + L  PV     E    P+        +        F     R   
Sbjct: 73  TLREALGNVRAKSAQFLATPVHGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRR-YC 131

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           ++L        +  + ++ L A    +      +       LT RE + + W SEGKTS 
Sbjct: 132 LVLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGRLTQREADIVKWTSEGKTSA 191

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 192 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 233


>gi|240137035|ref|YP_002961504.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens AM1]
 gi|240007001|gb|ACS38227.1| putative transcriptional regulator, LuxR family [Methylobacterium
           extorquens AM1]
          Length = 486

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 71/233 (30%), Gaps = 12/233 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    L     LLAR+         T    A T   G     +V     +   
Sbjct: 256 RQSEERFATAFRLTPVPTLLARLDGFT----VTSINDAFTRVFGYGEDSVVGRSPSETGL 311

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
             +  + +   + V          +    +               +       +  +  L
Sbjct: 312 WVADAARERFEEAVGR------TGFVPGQEVCLRHQDGSELDCLASAERVEIGEETFALL 365

Query: 134 TFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  R R    L      ++     +  GL+               G    LT RE 
Sbjct: 366 VLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQPGGHDGDGASPILTVRER 425

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 426 QILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478


>gi|226361383|ref|YP_002779161.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226239868|dbj|BAH50216.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 211

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 21/225 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V         L  ++     +       ++ E +       +         LD  +
Sbjct: 4   RVFLVDDHEIVRRGLVDLLGSVPDLDVVGEAASVGEAM-----ARIPGSGADVAVLDVRL 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L R +           L     L    +              + +        
Sbjct: 59  PDGNGVELCRDLRA--------ALPELRCLMLTSYSDDEALFDAIMAGASGFVLKQILGT 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +   G ++       +        N  +S         +L+ +E      I 
Sbjct: 111 DLVAAVRTVGEGGSLLDSRATSAL-------MNRIRSAR-RDDPLAQLSEQERAVFDLIG 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EG T+ EIA  L ++  T+ NY++ ++ K   + R+ A   A   
Sbjct: 163 EGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQAAVLATEL 207


>gi|293393060|ref|ZP_06637377.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291424594|gb|EFE97806.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 209

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 74/227 (32%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  ++   +  +  +   A     +  D      LD  + 
Sbjct: 4   VALVDDHVVVRSGFAQLLGLEHDITVAGQYGSAAQAWPA-----LLTDDIDVVVLDVAMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L++ +                 +   ++ T     +      + Y +       
Sbjct: 59  DENGLSLLKRLRQQR--------PAFRAIILSIYDTPAFVQSALDSGASGYLTKRCGPEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +  D +  +           +           LT RE E    + +
Sbjct: 111 LVQAVRSVGLGGHYLCADAVKAL-----------RGGQQDANVLAALTPREREVFYLLVK 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G++   IA  L +S  TV+ + A+++ K    +    + +A+++ ++
Sbjct: 160 GESVKGIAYQLELSHKTVHVHRANVLGKLQCSSTIELVHFALQHQLL 206


>gi|302865626|ref|YP_003834263.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302568485|gb|ADL44687.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 223

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 64/243 (26%), Gaps = 26/243 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +++  +D      +S +      LA +                    GA     V  
Sbjct: 4   PVRVLIVDDDPLVRGALSMILGGVPDLAVVGEATD---------------GAEVPAAVAA 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +  + +            L    F    + +      
Sbjct: 49  YAPDVVLMDIRMPRVDGLAATEALRATPEPPE--------VLVLTTFDADEQVLRALRAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKD 183
            + +       A I   +  +      +      ++          A+     +      
Sbjct: 101 ASGFLLKDTPPAEIVAAVRRVAAGEATLSPAVTRKLIAHVTGTAPVASPDPKRERAVRLL 160

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E    +  G+T+ EI+  L +S  TV  Y++ ++ K     R          
Sbjct: 161 DGLSEREREVAVLLGRGRTNAEISAELFMSVATVKAYVSRLLTKLDLNNRVQVALLVQDA 220

Query: 244 NIV 246
            +V
Sbjct: 221 GLV 223


>gi|260906658|ref|ZP_05914980.1| two component transcriptional regulator, LuxR family protein
           [Brevibacterium linens BL2]
          Length = 201

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 29/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    + LA ++ ++       +        G      VR        LD  +   
Sbjct: 6   IADDQTMVREALAALLGMESDFEVIAQCAR-----GDEVLPAVRHRTPDVALLDVDMPGP 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +    +A                +    +              + +      V R+ 
Sbjct: 61  DGLEAAAMLAEE--------FPEVKVVIVTTYGRPGWVRRALDAGASGFMVKDAPVDRLA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     +I  + + E                 H      LT RE E L   + G 
Sbjct: 113 EGIRRVMAGLEVIDPELVVE----------------SHVHGQSPLTERETEVLHAAAGGG 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  EIA  L IS  TV N +++ + KTA + R+ A+  A  N  +
Sbjct: 157 SVGEIAAQLFISSGTVRNRLSAAIGKTAARNRADAVRIARDNGWL 201


>gi|227505091|ref|ZP_03935140.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198294|gb|EEI78342.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 218

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 10/214 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD------LFQEQKLDSIVSSDWPFDL 86
           + R++  D        +  +    G    +    D            LD  +       +
Sbjct: 1   MIRVLLADDQPLLRSALETILNAAGDIQVVAAVSDGQAAVEAAAAHSLDIAILDIRMPGM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
               A +              +    F+      +      + +     D   +   +  
Sbjct: 61  DGIAAANALLAR---NASLRVIMLTTFNEEELVRSALLAGVHGFLLKDSDPEVLVGAVRA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDE 205
           ++    ++       +                   +   L T RE+E L  I+ G T+ E
Sbjct: 118 VYAGEAVLASGVTGTVLEGYRAAIAGRAELSAAQRQGLALVTRRELEVLRLITSGATNRE 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L ++  TV  +++S+M K   + R   +  
Sbjct: 178 IAQELVLAETTVKTHVSSLMSKLQARDRVALVLL 211


>gi|52143628|ref|YP_083200.1| response regulator [Bacillus cereus E33L]
 gi|51977097|gb|AAU18647.1| response regulator [Bacillus cereus E33L]
          Length = 212

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                KG    +  + ++ L       M    D         T RE+  +  I++G ++ 
Sbjct: 116 -----KGVYNSQTVMQDVVLDKIKCNLMGSKEDECKIDTSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|86138703|ref|ZP_01057276.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
 gi|85824763|gb|EAQ44965.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. MED193]
          Length = 204

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +S               +  VS    +    + +G          
Sbjct: 1   MRILLADDHDMVRETISAYLETKG--------EAEVSLATDLAGALDKIGRE-------G 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +        +     +   K   +L                         
Sbjct: 46  PFDLVLLDFQMPGMHGLAGLSEALNANGGKGVAILSGSAPAQT--------AQEALKLGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +  D + E            +          +L+
Sbjct: 98  IGFIPKTMGAQSLLNAVRFMAAGEIYVPVDLMRE------------EPAAPAHPLAAKLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L+ + +G+++ EIA  L +   T+  ++ ++ RK   K R+ A   A    +
Sbjct: 146 PRENEVLSGLCKGQSTKEIARDLDLQEVTIKLHVRTLCRKLEAKNRTQAAMIAKEAGL 203


>gi|307946119|ref|ZP_07661454.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307769783|gb|EFO29009.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 233

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 74/221 (33%), Gaps = 7/221 (3%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +   +        + +    +GA+H L+    +        +    WP      +  
Sbjct: 11  LRAVSEANAAHHVLDILESNLRRMGATHVLITGLPMPNRPIDSLVHRFRWPDQRNDGIES 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPE------NITPPAGMDNRYCSLTFDVARIRIGLML 146
           +      + L         +  T+        ++   AG  N+   +           + 
Sbjct: 71  TSLSANDSALMLGLASNRAMVWTISAGDMEHSDLLAAAGEGNQVVIVPVTELHPFQAFVY 130

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDE 205
                    +  L  + +L+       +   V  G +   L+ RE + L   + GKT+ E
Sbjct: 131 ASGPSLQANKWELAGLEVLSNAAFARLRDLGVVSGQRPGALSTRERKVLELTAYGKTAGE 190

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 191 IADLLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|326774525|ref|ZP_08233790.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326654858|gb|EGE39704.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 225

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 35/240 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ I++  +     + V  L      +  +   +                G +   L   
Sbjct: 10  KLRILVADDHTVMRAGVVALLADEPTIEIVGEAED---------------GRAAVALTER 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +             R   L    + T  E        
Sbjct: 55  LEPDVVLMDLRMPVLDGTSATARIVAGPS--------RTRVLILTTYETDAEIERAVEAG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y        ++   +        ++       +               +       L
Sbjct: 107 AIGYLLKDATRDQLVEAVHSAARGETVLAPRVAARLV------------ARMRRPAPVTL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T REV+ L  +++G ++ EI   L I+  TV  ++  +  K     R+ A+  A+  N++
Sbjct: 155 TPREVDVLGAVADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214


>gi|261408228|ref|YP_003244469.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261284691|gb|ACX66662.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 202

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 36/238 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +D      +  L +R   +      +   +       +               
Sbjct: 1   MNILIVDDDPLVCQSLRLLLSREADMEVTATANDGAAAIQCCEEVL-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +        +  +Q         F              
Sbjct: 47  -PDIVLMDIRMPGMDGIQAARQIKQK-----WPQVQIMM---LTTFQDEHSIRLALLAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +  V+ +   L  L     ++  + L  + L                    +LT
Sbjct: 98  EGYMLKSTQVSSMAQQLRALASGSSVVDANVLKTLML-------------PEKENRSDLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  ++ G ++ EIA  L IS  TV N ++ I+ K   + R+    Y  R ++
Sbjct: 145 PRENDILELVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQSL 202


>gi|260062316|ref|YP_003195396.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Robiginitalea biformata
           HTCC2501]
 gi|88783878|gb|EAR15049.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Robiginitalea biformata
           HTCC2501]
          Length = 217

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 60/233 (25%), Gaps = 32/233 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +       +  +  R   L     +   V     +                  
Sbjct: 2   IRIALVDDHRLFLEGIRSILDREIGLEVHASVGQGVELLNLLKTT--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L R        +          +   +     +         
Sbjct: 47  RADVVLTDIRMPGMDGLSLTR--------QICRSFPNTRVIALTMLDHEQDVKDLLDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +   +  +      + R                         +   LT
Sbjct: 99  RGYLVKNVEKEELVQAIHTVARGDYYLSR---------KFRPIYKNWKSQEPRQESVRLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE + L  I++G+TS +IA  L +SR T++ +  +I +K   ++  G +  A
Sbjct: 150 RRERQVLELIAQGRTSQQIAESLKLSRFTIDTHRKNIHKKMGIRSNIGLLKAA 202


>gi|328883671|emb|CCA56910.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
          Length = 219

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 60/243 (24%), Gaps = 24/243 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              Q + +V+  ++    + +  +      +  +                    G     
Sbjct: 1   MAGQPIRVVIADDEPLIRAGIRMILNSDPDIQVVAEAAD---------------GRQAVE 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             R        LD  +        +  +                 +    F      +  
Sbjct: 46  EARAHAADVVLLDIQMPVLDGLSALPELRR--------AAPSSRVIVLTTFGERENVLRT 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +       A +   +         +       + +            +   G+
Sbjct: 98  LEHGGAGFLLKDTAPAELIGAVRAAAAGDAYLSPAATRHV-VERLAAGREMTRAEEARGR 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ +E E L  + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A  
Sbjct: 157 VAGLSEKEREVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLDCENRVQAALLARD 216

Query: 243 NNI 245
             +
Sbjct: 217 AGL 219


>gi|255037324|ref|YP_003087945.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
 gi|254950080|gb|ACT94780.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM
           18053]
          Length = 216

 Score = 99.2 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                    + Y     ++      +  +        ++ + ++   A    + +     
Sbjct: 93  VREVVRSGVSGYIVFEAELDEWERAIRAVSEGKVYYGQEVMLKL---AESSMDKYMQEPA 149

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +DF L+ RE+E L  ++   ++++IA  L IS  TV  +  ++ +K   +   G   
Sbjct: 150 PSTRDF-LSKREIEILRLVASEYSTNKIASELCISDKTVETHRRNLFQKLGVRNSVGLTK 208

Query: 239 YAVRNNIV 246
            AVR  +V
Sbjct: 209 IAVRMGVV 216


>gi|320534127|ref|ZP_08034667.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133647|gb|EFW26055.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 230

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 70/240 (29%), Gaps = 18/240 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  +       ++ +  ++  L  +            +  L    G       
Sbjct: 8   LRPTSVMIVDDQRYARLGLALMIRKAPDLRVVAEAGDGQEALEVLEGLNRSTG------- 60

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +         R MA                L    +           
Sbjct: 61  ---LPDVVLMDVRMPGMDGISATRAMARR--------FPTVKVLVLTTYDEDDYAFGALE 109

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       A++   +  +     ++      E+      +A      +    +  
Sbjct: 110 VGASGFLLKDVRAAQLAQAVRAVAQGDAVLTPRVTKELIARGVPRALSGAQREGLRERFG 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++    I+EG +++EIA  L +   +V   ++ I+ K   + R        ++ 
Sbjct: 170 ALTPRELDVARLIAEGMSNEEIAERLVLQPASVRRNVSRILAKLHLRDRVQIAVAWYKSG 229


>gi|291456635|ref|ZP_06596025.1| DNA-binding response regulator [Bifidobacterium breve DSM 20213]
 gi|291381912|gb|EFE89430.1| DNA-binding response regulator [Bifidobacterium breve DSM 20213]
          Length = 217

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 63/214 (29%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK---------LDSIVSSDWPFD 85
           R+  +D        +  +    G +  L    D     +          D ++       
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTAEVLWTANDGDTAVRRYFETPASRPDVLLIDIQMPG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  E        +     F   F                Y     DVA +   L 
Sbjct: 62  TSGLDAAREILATDPAARIL---FLTTFADQSYIAQAMGLGAKGYLIK-QDVATVGPALQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  + L ++       A+   S D     +  L  RE E    ++EG  + +
Sbjct: 118 AVMAGQVVLGAEVLGKLTERTPNPADSDDSRDTADSIEGLLGEREREITALVAEGLDNRD 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV N I++I+ K     R+     
Sbjct: 178 IAARLFLSEGTVRNRISAILDKLGLTNRTQLAIL 211


>gi|229029518|ref|ZP_04185599.1| Response regulator [Bacillus cereus AH1271]
 gi|228731800|gb|EEL82701.1| Response regulator [Bacillus cereus AH1271]
          Length = 212

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVDYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKCNLMESKEEECKIDTSL-----FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|182411868|ref|YP_001816934.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839082|gb|ACB73334.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 234

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 68/236 (28%), Gaps = 28/236 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  + L  +       V+ L  +   L      D        +  L+             
Sbjct: 19  KSRVFLVDDHPITRQGVAVLINQERDLMVCGEADSAPVAIDLIQKLS------------- 65

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +    +L++ +     +    VL         +              
Sbjct: 66  --PDVALVDITLKTTSGIELMKHLKALRPEM--PVL------IMSMHDESLFAERALRAG 115

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       A+I   +  +      +      +  +L     N  +           L
Sbjct: 116 AKGYIMKHEASAKILTAIRRVLSGELYLSDKMKEK--MLHRLVNNRKEEVVFSID---TL 170

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + RE+E    I  G  + +IA  L +S  T+++Y   +  K   ++ +  + +A++
Sbjct: 171 SDREMEVFQLIGNGYGTRQIASKLNLSVKTIDSYREHLKLKLRLESGTELVRHAIQ 226


>gi|149280407|ref|ZP_01886527.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp.
           BAL39]
 gi|149228821|gb|EDM34220.1| DNA-binding response regulator, LuxR family protein [Pedobacter sp.
           BAL39]
          Length = 211

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 24/224 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
              P   + L  ++  +        +   T+  G S    ++        LD  +     
Sbjct: 9   DDHPMMLEGLKNILTAETDFKV---LDCFTD--GKSTLANIKISQPDILLLDINLPDCNS 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +LV         K    ++        V +      +  +   + Y         I  G
Sbjct: 64  IELVSL-----LKKQCPGMKILAIS---VHNEYAVINSMISEGADGYIQKNASGLEIIEG 115

Query: 144 LMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           +  +      +  + RL     L                    LT RE E L   + G T
Sbjct: 116 IRTVLQGKLFLCSQTRLKMSKDLKEEVLQNVPK----------LTRREKEILHEAARGLT 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++A  L IS +TV ++  +++ K   K+ +  I  A+   I+
Sbjct: 166 TAQMAETLFISPHTVESHRKNLIEKFGVKSIASVIKLALEYGII 209


>gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047]
          Length = 224

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 65/215 (30%), Gaps = 13/215 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVS--WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
                 D    +  L   ++  +    ++L         LL R   +    +D  +    
Sbjct: 2   DFLIADDHNVVIAGLKGALADAFEGANFSLAHDPREVFDLLGRKSDYDLALVDLKMPGMD 61

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            F+ +  +            +                    A     +   +     +  
Sbjct: 62  SFEFLERLCQQ--------FKSLKVAVISGLDDPETIKKAIALGAVGFIPKSVSEDTLIN 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGK 201
            + L+      +    L     +            V   + ++ LT R+ E L  + EG+
Sbjct: 114 AVRLVLRGDTYLPPHLLKVA--IEPDPDEGALEIPVDLKRAYDVLTERQKEILLLLGEGR 171

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++ +IA  L +S NT+  +++ ++R      R+ A
Sbjct: 172 SNKDIARRLDLSENTIKVHVSGVLRALNLNNRTQA 206


>gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 248

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 92/254 (36%), Gaps = 34/254 (13%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++  ++ R   V+ + +RSDL  R+I           M  L +  G + F +    +  +
Sbjct: 9   MSSAEQSRMVRVNRISSRSDLFPRLI----------AMQKLADAHGFAIFRVSGSGIPAK 58

Query: 72  QKLDSIVS--------------SDWPFDLVRCMAL----SEKDKYYNVLQRPTELFCPVF 113
           Q+L   +                 +   L+  +             +        F P  
Sbjct: 59  QRLVCELENWGSSNAGFGKAFTDAYGDALLEHIEKSLLPLSWAGGCDRAAPGPADFAPFM 118

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             L + I P +G+          +  +  G ++          D + E+     +     
Sbjct: 119 TRLQDGIVPFSGLA-----FPVRLGAVGNGFIVFTGDEIDPSSDTIVELHGRCCHIMMDL 173

Query: 174 KSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            S D       E L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  
Sbjct: 174 LSLDERRTAAAEALSEREIACLQLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVN 233

Query: 233 RSGAIAYAVRNNIV 246
           R  AIA A+R   +
Sbjct: 234 RIQAIAKAIRLGYI 247


>gi|149203303|ref|ZP_01880273.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
 gi|149143136|gb|EDM31175.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. TM1035]
          Length = 240

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 17/219 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D L+  +     +       +L + +     ++          LD  +   
Sbjct: 26  IVDDHPLFCDALSMTLKSVAGIGRIDTAESLDQAL----AMVAENGPPDIIVLDLNLPDV 81

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +     +    V+   +E             +        +          R
Sbjct: 82  SGLDGLARLRAVAGETPIVVVSSMSESR--------MVCSVIHAGAAGFVPKHSQRPVFR 133

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                +      +    +     L   Q       D    +   LT ++   L  I EG+
Sbjct: 134 AAFEAIAAGEIFLPEGVV-----LTKTQEQPVNDRDEAVERLAHLTRQQARILQLICEGR 188

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            + +IA  L I+  TV  ++ +IMRK   +TR+ A+  A
Sbjct: 189 LNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227


>gi|312130278|ref|YP_003997618.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906824|gb|ADQ17265.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 205

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 34/233 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            ++I++  +D      +  +    D +  +           ++ AL              
Sbjct: 2   PISIIIIEDDPLYNQTLRKIIDHEDGMTCVAQCYSYEDAVDQLKAL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +    +++  +A       Y        + C V       ++     
Sbjct: 48  -NPHVALVDIRLENKSGIEVMEAVAGFGLQTQY--------IICSVSDDDRNIVSALRIG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y      + +I   +  ++  G         ++                      EL
Sbjct: 99  ASGYLVKGESMEKIVASIREVYQGGVPFSSKVARKVL-----------KQFSPKETFHEL 147

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T  E E +  +S+G T  EI+    +S +TV  ++ +I RK     +  AI  
Sbjct: 148 TKTEQEVILLVSQGLTYQEISDKQCVSLDTVRKHLVNIYRKLGVNNKVEAINK 200


>gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 201

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +     +  L    D +  +  +                 G   + ++   
Sbjct: 2   IRIVIAEDQKMLRGALVSLLKLEDDIEVIAEVSN---------------GVDAWNIITKQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++   +                 +    F              
Sbjct: 47  QPDVCLLDIEIPDITGLEIAEKLRTMGHS--------CKIMIVTTFARPGYLQKAMDAKV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +    R++  D    + L                 +D  LT
Sbjct: 99  DAYLLKDQPIEFLIEAIHKVMNGERVVSADLTATLFL----------------KEDNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  +  G T+ EI   L ++  TV NY++S ++K   ++R  AI  A     +
Sbjct: 143 AREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGWI 201


>gi|114707055|ref|ZP_01439954.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
 gi|114537605|gb|EAU40730.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
          Length = 219

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 60/225 (26%), Gaps = 23/225 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   +   R+I             + +E      +   R        +D  +   
Sbjct: 8   LVDDHPIVREGYRRLIESRTPHRIVAEAESASEA-----YRTYRMCEPDLVVMDLSLPGP 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +R +       +    +                +         Y + + D   + 
Sbjct: 63  GGLEALRHIRQ-----WDGTARILVFSM---HQNPAYAVKAFEAGAVGYVTKSSDPTELL 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +       R +  D   E+  +                    L+ RE E L  I+ G 
Sbjct: 115 AAIEEALEGRRAMSSDIARELADVHL----------NGVTPLAGLSPRETEILRMIALGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T + IA  L +S  TV N    I  K    T +     A+   ++
Sbjct: 165 TDEAIADGLSLSLKTVQNNHYRIRAKLDAPTDALLTHIAIEAGLL 209


>gi|226309444|ref|YP_002769406.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226188563|dbj|BAH36667.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 204

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 39/241 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + ++L  ++    S ++ + +  D +  +   +                G    +   
Sbjct: 3   EPIKVLLADDENLIRSALAMMLSLEDDIVVVAEAES---------------GEDAVIAAA 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  ++     +  + +A +        +     +               + 
Sbjct: 48  KHQPHVAVLDLQMAGIDGIETAQQIAQT--------VSGCVSIIVTSHGRPGYLKKALSA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   T   A +   +  +   GR +      E                     D  
Sbjct: 100 GVRGFLPKTTPAATLAEVVRSVHAGGRYVDPSLAAE----------------AIGAGDSP 143

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L + ++G + ++IA    +S  T  NY++S + K     R  A   A R   
Sbjct: 144 LTPREADVLEYAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGW 203

Query: 246 V 246
           +
Sbjct: 204 I 204


>gi|53721155|ref|YP_110140.1| two-component system response regulator [Burkholderia pseudomallei
           K96243]
 gi|167818210|ref|ZP_02449890.1| two-component system response regulator [Burkholderia pseudomallei
           91]
 gi|52211569|emb|CAH37564.1| putative two-component system response regulator [Burkholderia
           pseudomallei K96243]
          Length = 220

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + + H       +  +     +      +                  
Sbjct: 6   IKVVIADDHPAVLTGLLHALAPVSSIEVVSACKNSTELLTALNEY--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +  D   D +   +  ++      L   T +  P            +   
Sbjct: 51  PCDVVISDYNMPDDNFGDGISLFSYIQRRYPSTRLIALTMISNPAIIH-----NLISHGI 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S + ++  I   +   + KG  +      E  + + +              + +L+
Sbjct: 106 STVLSKSDEIGHIIAAIHASYAKGSYLSP--TMETIVNSGH--------GKSSDGEVQLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +   + G + +EIA  L  S+ T+++  A+ MRK    +    + YA++  +V
Sbjct: 156 PREIEVVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGVNSDIDLLKYALKAKLV 214


>gi|75909280|ref|YP_323576.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75703005|gb|ABA22681.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 209

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +               T   + I   +  +     +I  D L    +             
Sbjct: 89  DIEAALRSGVRGILLDTSTESEILTAIEAIALGLIVIHPDVLEFFSV----------REK 138

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE+E L  +  G  +  IA  L IS +TV  +++SI +K A  TR+ A+
Sbjct: 139 AVTNPVQSLTPREIEVLQMLGSGLGNKAIAQSLHISDHTVKFHVSSIFQKLAVSTRTEAV 198

Query: 238 AYAVRNNIV 246
              VR  ++
Sbjct: 199 TVGVRLGLI 207


>gi|120598578|ref|YP_963152.1| two component LuxR family transcriptional regulator [Shewanella sp.
           W3-18-1]
 gi|146293343|ref|YP_001183767.1| two component LuxR family transcriptional regulator [Shewanella
           putrefaciens CN-32]
 gi|120558671|gb|ABM24598.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|145565033|gb|ABP75968.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
 gi|319426643|gb|ADV54717.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens 200]
          Length = 220

 Score = 98.8 bits (245), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 68/236 (28%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + +NI++  +     + +    T +   A+    D   +    +             
Sbjct: 1   MKQENLNIIIADDHPLFRNALRQALTSAFEQAKWYEADSAEALQTVLD------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                 +    LD  +           + L        V+             +      
Sbjct: 49  -THDVSYDLVLLDLQMPGSHG--YSTLIHLRSHYPELPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      +           A          D    K
Sbjct: 100 IHYGSSGFIPKSASMETLKEALSAVLFGDIWLPAG--------AEIIPIEDDDIDKMASK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
 gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f]
          Length = 90

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL+ + A +    D        LT RE+E L  +++G  + +IA  L IS NTV N+I +
Sbjct: 5   LLSEFAAMIKTKDDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRN 64

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K    +R  A+ YAVR  ++
Sbjct: 65  ILEKLQLHSRMEAVVYAVREKLL 87


>gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 201

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 63/223 (28%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +  +   +     +  +     G +   LVR  +      D  +     
Sbjct: 3   RLVIAEDQTLVLGAIAALLELEDDLTIIGRAKDGTAALDLVRTLVPDILLTDIEMPGPSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D+ R +A +              +    F                Y      V ++   
Sbjct: 63  IDVARDIAAASLP--------TRTIIVTTFARPGYLARARTAGVRGYLLKDAPVEQLAAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  I  D +                          LT RE + L    EG ++
Sbjct: 115 IRTVATGGTFIPPDLMAA----------------AWDAGADPLTARERDALRLAEEGLSN 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  LG+S  TV NY+++   K     R  A   A  N  +
Sbjct: 159 KDIARRLGLSPGTVRNYLSTAAGKLNAANRIEAGRIARANGWL 201


>gi|83647746|ref|YP_436181.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635789|gb|ABC31756.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 221

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 29/229 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  +     + +    T++     ++ ++   +                  +V     
Sbjct: 5   IIIADDHPLFRAALKQAVTQAVRFVDVVEVESIATLQD--------------AVVANPDA 50

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +     F  +  + +  +     V+             L           + 
Sbjct: 51  DLVLLDLNMPGAHGFSGL--VFMRGQYPGLPVVIVSGSE------ELQVIRRAIDYGASG 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +  +  I   +  +      +  D        AA   ++   +     +   LT +
Sbjct: 103 FIPKSAPLDEISQAIQAVLNGEVWLPADV-------AAKIDSVKAEHSDFSERLATLTPQ 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +   L  ++EG  + +IA  L +S  TV  +I ++ RK   + R+ A+ 
Sbjct: 156 QFRVLGMLTEGMLNKQIAYDLDVSEATVKAHITALFRKLGVRNRTQAVI 204


>gi|88799009|ref|ZP_01114590.1| putative transcriptional regulator, LuxR family protein [Reinekea
           sp. MED297]
 gi|88778236|gb|EAR09430.1| putative transcriptional regulator, LuxR family protein [Reinekea
           sp. MED297]
          Length = 218

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 31/234 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q+NI++  +       +S    ++     +  +                          
Sbjct: 8   DQLNILIADDHPLFRQALSEALGQTRHTISIQQVQTLAD---------------TLAAAD 52

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +        +  +     +    V+            +        + 
Sbjct: 53  QGDIDLILLDLKMPDCVGLMGLIELREKHPETAIAVV--------TANESSQTMRKVRSA 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   + ++  +   L  L   GR    +                        K   
Sbjct: 105 GAVGYLIKSMELESLVNALNTLLEGGRFFSLE--------GIQDPQDIDDDIDAMKKLAS 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT ++   L+ IS G  + +IA  L I   TV  +++ I RK     R+ A  +
Sbjct: 157 LTPKQQHVLSLISRGYLNKQIAYELDIKETTVKTHVSEIFRKLGIFNRTQAAIF 210


>gi|329944777|ref|ZP_08292856.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529913|gb|EGF56803.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 235

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 72/257 (28%), Gaps = 38/257 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V I+L  +D    + +  L    +    +                    G     +V
Sbjct: 1   MSPVRIILVDDDPLTRAAIKPLLRPREDYRVVAEAGD---------------GRQAIDVV 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +  R        +     + P  +    +      +    
Sbjct: 46  GRVEADIVLMDLGMPVMDGIEATR--------QICQAPRHPHVVALTTWDVDDAVVRVIE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---------------YQ 169
                Y         +  GL  +     ++    L E+                    + 
Sbjct: 98  AGAVGYLLKYSASEELDAGLRRVMAGESVLSPGALAELLRYVRSQPALAAPALAAYDAHA 157

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               ++          L+ RE++ +T  +EG T++EIA  L IS +TV  ++ S   +  
Sbjct: 158 EERQRAVAQARQAAAGLSRRELDVITAAAEGLTTEEIAGRLYISASTVKAHLRSAQERVG 217

Query: 230 TKTRSGAIAYAVRNNIV 246
            + R      A R  ++
Sbjct: 218 ARNRVHLAVLAERAGLL 234


>gi|212709055|ref|ZP_03317183.1| hypothetical protein PROVALCAL_00087 [Providencia alcalifaciens DSM
           30120]
 gi|212687967|gb|EEB47495.1| hypothetical protein PROVALCAL_00087 [Providencia alcalifaciens DSM
           30120]
          Length = 218

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 74/243 (30%), Gaps = 31/243 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N   ++  I+L  +     + V  L +    L  +                    G +  
Sbjct: 5   NIMTEKSTILLIDDHPMLRNGVKQLISLEPSLQVIGEAGD---------------GKTGI 49

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            +          LD  +     F+ +  +   E             +   V +   + I+
Sbjct: 50  QIAEEQDPDLILLDLNMPGMNGFETLDELRKRELS--------GRIILFTVSNYSDDLIS 101

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y     +   + I L        ++       +           +       
Sbjct: 102 ALKRGADGYLLKDMEPEELIIALKEAASGKMVVSPTLTSVLA-------ESLRENQSQNE 154

Query: 182 KDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            D   LT RE + L  I++G ++  IA  L I+ +TV  ++  +++K   K+R  A  + 
Sbjct: 155 SDAIALTPRESDILELIAQGLSNKMIARNLDIAESTVKVHVKHLLKKLNLKSRVEAAVWV 214

Query: 241 VRN 243
           ++ 
Sbjct: 215 LQQ 217


>gi|308049915|ref|YP_003913481.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632105|gb|ADN76407.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 216

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 32/236 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +  +++I++  +     S +        L A     D   S   ++             
Sbjct: 1   MDQDELHILIADDHPLFRSALKQALAGR-LEAVWEEADSADSLEAKLK------------ 47

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +           + L        V+                    
Sbjct: 48  ---LRQPDLVLLDLEMPGSHG--YSTLIHLRSHFPAVPVVVISAHEDPTTVA------KA 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +     +   + D  ++   L ++      +    + E+              +    K
Sbjct: 97  LSYDCQGFIPKSSDPDQLAEALQIVLDGDTYL-PSNMAELA-------EPSFEANDIGAK 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             ELT ++   L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 149 LAELTPQQYRVLQMFAEGMLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 204


>gi|268316683|ref|YP_003290402.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262334217|gb|ACY48014.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 242

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R    R   V   P   + LA  +  +  +          E +     L          
Sbjct: 21  VRRGPIRIFVVDDHPAIQEALAATVSSEADLELVGSARTAAEGMKRIRAL-----RPDVV 75

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      DLV  +           L     +   ++  +             Y  
Sbjct: 76  VVDISLEDAHGLDLVHQIRAE--------LPETQVIVFSMYDEVAYAERAIRAGAMGYVM 127

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +     +   +  +      +       I           +S   H      LT RE+ 
Sbjct: 128 KSESTQSVVEAIRTVMQGEVYLSHRMASRILSKVV----RGRSVQPHVLSLDMLTDREMA 183

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               + +G + +EI   L +SR TV  Y      K    +    + +AV+
Sbjct: 184 VFQLLGQGYSIEEIMQRLNLSRKTVETYRRRAKEKLGFSSVGELLQFAVQ 233


>gi|255599174|ref|XP_002537168.1| Response regulator uvrY, putative [Ricinus communis]
 gi|223517249|gb|EEF25214.1| Response regulator uvrY, putative [Ricinus communis]
          Length = 112

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    + I      ++           +           L+
Sbjct: 1   MGYVTKRSAAEELIKAIRSVAQGKKYIEASVAQQMA---------IQQLSGEQNPVDVLS 51

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++ GK+++EIA  L +S  TV  ++ +I +K   +  +     A+R  ++
Sbjct: 52  EREFEVFMSLARGKSTNEIAETLFLSPRTVGTHLYNIKQKLNAQNSAEIALIAMRCGLL 110


>gi|215410428|ref|ZP_03419236.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444983|ref|ZP_03431735.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T85]
 gi|289756930|ref|ZP_06516308.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T85]
 gi|294996325|ref|ZP_06802016.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis 210]
 gi|298524337|ref|ZP_07011746.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           tuberculosis 94_M4241A]
 gi|289712494|gb|EFD76506.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis T85]
 gi|298494131|gb|EFI29425.1| nitrate/nitrite response regulator protein NarL [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326904936|gb|EGE51869.1| nitrate/nitrite response transcriptional regulator narL
           [Mycobacterium tuberculosis W-148]
          Length = 216

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 70/245 (28%), Gaps = 32/245 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N + ++V +V+  +       V    + S  +  +   D                GA+  
Sbjct: 3   NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADD---------------GAAAL 47

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L++  L     LD  +       +   +   E             L             
Sbjct: 48  ELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELP--------TRVLLISAHDEPAIVYQ 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   +         I   ++       ++    +  +   A               
Sbjct: 100 ALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPVAPV-- 154

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I+  ++   IA  L ++ +TV  ++  +  K     R+ A+A A+
Sbjct: 155 ----LSAREREVLNRIACRQSIPAIAAELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAM 210

Query: 242 RNNIV 246
           R  ++
Sbjct: 211 RQRLL 215


>gi|121596081|ref|YP_987977.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222112237|ref|YP_002554501.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120608161|gb|ABM43901.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221731681|gb|ACM34501.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 209

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +       +    T S  +               +                  
Sbjct: 2   IQVVLCDDHAVLRRGIRDTLTESPDIHVTGEAGSYPELREVLRTAA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  +        ++       P        +       
Sbjct: 48  -CDVLLLDLNLPGRSGLEVMASVKETH-----PDIKVLIVSMYP---EDQYALRCLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D  ++   +  +    + +  +    +            +          L+
Sbjct: 99  HGYANKAGDPVQLIAAVQTIVQGRKYLTPEVAQLLA--------DSLAQPTPELPHESLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +V
Sbjct: 151 ERELQTLVKIASGKRLSDIAEELMLSPKTVSVYRARVLEKLKLANNAELTVYAIRNRLV 209


>gi|290955399|ref|YP_003486581.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644925|emb|CBG68011.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 63/238 (26%), Gaps = 24/238 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +     +  + E   G +   L R        LD  +     
Sbjct: 8   RVLIADDQDMVRTGFRFFLDAQPDITVVAEAADGETAVRLARELRPDVCLLDIRMPRLDG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +A         V      +    F           G    +         +   
Sbjct: 68  LEATRLLAGPG------VADPLRVVVVTTFDLDEYVYGALRGGACGFLLKDSGPTLLAEA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-----------------DFEL 186
           +        ++       +      +           G+                    L
Sbjct: 122 VRAAAAGDALVSPSVTVRLLRHVTAEKAEAPERKEKTGRAEKRRQEGGAGPGAPRSQEAL 181

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T RE++ +  ++ G T+ EIA  + +S +TV  ++ SI  K A + R    A+A R  
Sbjct: 182 TERELDVVRLVALGHTNAEIAASMFVSLSTVKTHLGSIQLKLAARNRVEIAAWAWRTG 239


>gi|46581079|ref|YP_011887.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450500|gb|AAS97147.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 227

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 27/237 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++          +  L    D ++ +  +                +      L   D 
Sbjct: 6   RILVADAQPLVREGLKALFGVMDGVSVVAEVSSGGGVLTVCDRARPDLLLLDCCLPEKDG 65

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                L  ++ +    + V  +     D     +                     A   +
Sbjct: 66  ---VLLARLIRARGGGERVLILCGHGGDCLDPAV---------------------AAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D   +R  +  +   G  +       +   A      +   D   G    LT 
Sbjct: 102 GLLLKEADHEEVRFAVRSVLAGGFFVSPSVAGRL---ATRCRQGWALEDRRTGGWEALTP 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L +++EG  + EIA +L +S  TV  + A+ M K    + +   A+A R  +
Sbjct: 159 REREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEVRAFAQRQGL 215


>gi|330898318|gb|EGH29737.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 220

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L         +               L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADMPGYTILGETADGSQLASLAQRL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S      +  +          V      L     +     +        
Sbjct: 49  PDIILLDICMKSIDGLVALEHLLK--------VQPHCMVLILSAQNDPDMIMRTLDIGAQ 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A +   L  L    R +       +  +                + F LT 
Sbjct: 101 GYLLKDTTAAELEQALEALRGNERYLSPAIAQMV--IECALRGTPSDRAQAAKERFRLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRERII 216


>gi|260427555|ref|ZP_05781534.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260422047|gb|EEX15298.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 233

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 19/239 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +++   +L+   + R   V   P   D L   +              L + +     ++ 
Sbjct: 1   MRERAEILSERGQSRALVVDDHPLFCDALTLTLQSIADFEEIRTAGTLEKALD----IVA 56

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + +      LD  +      D +  +  +              +                
Sbjct: 57  QGEPPDLVILDLNLPDVNGLDGLVRLRNAAPRAA--------IIIASSMADNRMISQALK 108

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       +  R     +           +   G       +          +  
Sbjct: 109 AGADGFVPKHSQRSVFRRAFEAMARGEAFTPDGYIDPQGPGEDGPGDAL-------ERLA 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LTG++   L+ I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A   
Sbjct: 162 TLTGQQARILSLICEGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVHSRTQAVLIAQEA 220


>gi|85703813|ref|ZP_01034916.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
 gi|85671133|gb|EAQ25991.1| two component transcriptional regulator, LuxR family protein
           [Roseovarius sp. 217]
          Length = 240

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 63/230 (27%), Gaps = 27/230 (11%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +S        +AR+   +                     ++       
Sbjct: 25  LIVDDHPLFCDALSMTLKSVAGIARIDTAESLDQALA--------------MVAENGPPD 70

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      D +  +          V+     +            +        +
Sbjct: 71  IIVLDLNLPDVTGLDGLARLKS--------VVGETPIVVVSSMSESRMVCSVIHAGAAGF 122

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                     R     +      +    +     L     +     D    +   LT ++
Sbjct: 123 VPKHSQRPVFRAAFEAIAAGEIFLPEGVV-----LTKTPEHPVNDRDEAVERLAHLTRQQ 177

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              L  I EG+ + +IA  L I+  TV  ++ +IMRK   +TR+ A+  A
Sbjct: 178 ARILQLICEGRLNKQIAYELSIAETTVKTHVTAIMRKLGVQTRTQAVLIA 227


>gi|268592199|ref|ZP_06126420.1| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
 gi|291312602|gb|EFE53055.1| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
          Length = 218

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 76/243 (31%), Gaps = 31/243 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N   ++  I+L  +     + V  L +    L  +                    G +  
Sbjct: 5   NIVNEKSTILLIDDHPMLRNGVKQLISLEPSLQVIGEAGD---------------GKTGI 49

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            +          LD  +     F+ +  +   E             +   V +   + + 
Sbjct: 50  QIAEEQDPDLILLDLNMPGMNGFETLDELRKRELS--------GRIILFTVSNYSDDLVN 101

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y     +   + + L        ++          LA+  A   +       
Sbjct: 102 ALKRGADGYLLKDMEPEELIVALKEAASGKLVVSP-------TLASVLAESLRDNTTQDD 154

Query: 182 KD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE + L  IS+G ++  IA  L I+ +TV  ++  +++K   K+R  A  + 
Sbjct: 155 NNIASLTPREADILELISQGLSNKMIARKLDIAESTVKVHVKHLLKKLNLKSRVEAAVWV 214

Query: 241 VRN 243
           ++ 
Sbjct: 215 LQQ 217


>gi|218528441|ref|YP_002419257.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218520744|gb|ACK81329.1| transcriptional regulator, LuxR family [Methylobacterium
           chloromethanicum CM4]
          Length = 486

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 71/233 (30%), Gaps = 12/233 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    L     LLAR+         T    A T   G     +V     +   
Sbjct: 256 RQSEERFATAFRLTPVPTLLARLDGFT----VTSINDAFTRVFGYGEDSVVGRSPSETGL 311

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
             +  + +   + V          +    +               +       +  +  L
Sbjct: 312 WVADAARERFEETVGR------TGFVPGQEVCLRHQDGSELDCLASAERVEIGEETFALL 365

Query: 134 TFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  R R    L      ++     +  GL+               G    LT RE 
Sbjct: 366 VLQDITERKRGERELFEAIEAVMADTSWFSRGLIEKLANLRQPGGHDGDGASPILTVRER 425

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 426 QILNLICTGLDDDAIAKRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478


>gi|144898192|emb|CAM75056.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 222

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 71/241 (29%), Gaps = 26/241 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ I+L  +       +         L R+      +       AL +   AS+  L 
Sbjct: 1   MTQMEILLADDHAMVRDGLV------PFLQRVTDNASVLEAGSFDEALIKARQASNLGLT 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  M       +  V+   +    P      +      
Sbjct: 55  --------ILDLNMPGMDGLNGLATMRAE--FPHVPVV-ILSGSTHPA-----DAFHSIE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N +   T     I   L L+    + +       +                  G   
Sbjct: 99  SGANGFIPKTMRGETIIGVLRLVLSGEKYVPP----FLFDYHETMNRKEPENTGKSGPLA 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  I +G  +  IA    +   TV  ++ +I RK A   R+ A   A+   
Sbjct: 155 VLSAREMEILGMIVDGAPNKVIARAFELQEVTVKAHLRNIFRKIAVSNRTEAARVAILAG 214

Query: 245 I 245
           +
Sbjct: 215 L 215


>gi|160895826|ref|YP_001561408.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361410|gb|ABX33023.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 245

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 21/244 (8%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + + +  +D      +  +   +  +              ++               
Sbjct: 16  ATPIRVAVVEDDAACRHALVGVINAAKDMVLCWAAASRAEALHQLGRA-----------D 64

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +++  +                 +   +F      +    
Sbjct: 65  GAGAMDVMLVDLGLPDGSGLEVIAAVRTRH--------PGAAVMVSTIFGDEQHVLAAIE 116

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGK 182
                Y         +   +  L   G  I      ++ L       +   +        
Sbjct: 117 AGAMGYLLKDLAADAVLEEVRSLHAGGSPINPMVARKLLLRQQRAGAVAGLQPPAEPQAA 176

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+E L  ++ G T DE+A  LG+SR+TV  ++  I  K    +R+  +  A++
Sbjct: 177 AQALSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQVSSRTQMMHVALQ 236

Query: 243 NNIV 246
              +
Sbjct: 237 RGWL 240


>gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
 gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus
           proteolyticus MRP]
          Length = 233

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 68/230 (29%), Gaps = 30/230 (13%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
               S    L    D     + L   +S            GA    + R        LD 
Sbjct: 33  PAAASVPLTLVIADDHPLFRMGLKYALSHQGFEVVAEAADGAEALEVCRHLRPTAALLDV 92

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      ++ R +                 +    F                Y S   D
Sbjct: 93  KMPGLTGIEVCRQLRSE--------CPEVLSILITTFAEPAIIQAAREAGARGYLSKETD 144

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   L  +        +DRL  + +                     LT RE E L  
Sbjct: 145 PPALATQLRAIIAD---PTQDRLPRVEV-------------------PRLTPRESEVLPL 182

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G ++ EIA  LG+S +TV +++A +  K     R+ A++ A    ++
Sbjct: 183 LAQGLSNKEIARELGVSPDTVKDHLARMYGKLDACDRTEAVSRARTIGLL 232


>gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597]
 gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597]
          Length = 199

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + ++  L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQL--LAFQADVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y      V
Sbjct: 56  MPVKTGLEVLEWVRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSV 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V       LT +E+  L  I
Sbjct: 108 ADLMKTLYTVLEGRKEYSPELM-----------------EVVMTHPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDASNRTDAANIAKESGWL 199


>gi|254741101|ref|ZP_05198789.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Kruger B]
          Length = 212

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKCNLMESKEDECKID-----KCLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|167633195|ref|ZP_02391520.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
 gi|167531233|gb|EDR93911.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0442]
          Length = 233

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 26  ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 85

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 86  EATKLICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 136

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 137 KGVYNGQTVMQDVVLDKIKCNLMESKEDECKID-----KCLFTERELSIIALIAKGFSNK 191

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 192 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|308447116|ref|XP_003087338.1| hypothetical protein CRE_08625 [Caenorhabditis remanei]
 gi|308257188|gb|EFP01141.1| hypothetical protein CRE_08625 [Caenorhabditis remanei]
          Length = 217

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 60/230 (26%), Gaps = 26/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+                  
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQISETAAVNEFYERLE--------------NGP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +  +                 +               A   
Sbjct: 47  EPDLVLLDLNLPGASGFSALVHVRAQ--------YPALPIIVVSAHEDASIIQRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +       +                   +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRQVLDGDIWLPP----NLPAANMNFDPRAADETALAERIQSLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 155 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 204


>gi|269138681|ref|YP_003295382.1| two-component response regulator, hexose phosphate transport system
           regulatory protein [Edwardsiella tarda EIB202]
 gi|267984342|gb|ACY84171.1| two-component response regulator, hexose phosphate transport system
           regulatory protein [Edwardsiella tarda EIB202]
 gi|304558688|gb|ADM41352.1| Transcriptional regulatory protein UhpA [Edwardsiella tarda FL6-60]
          Length = 209

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 24/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V          A+++ L+  ++   +  +  E         +  D      LD  
Sbjct: 2   IRVVLVDDHVVVRSGFAQLLTLEPDLAVAGQFSSAAEAWQP-----LLRDDVSVAVLDIA 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L++ +                 +   ++ T     +      + Y +     
Sbjct: 57  MPDENGLSLLKRLRAKR--------PGFRAIILSIYDTPAFVKSALDAGASGYLTKRCGP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +  D L  +           +  +        LT RE E    +
Sbjct: 109 EELVQAVRSVSMGGHYLCADALRAL-----------RGGEPAAEALKILTPREREIFALL 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +   IA  L +S  TV+ + A+++ K    +    + +A+ + ++
Sbjct: 158 VKGDSVKRIAFALDLSHKTVHVHRANVLGKLQCHSTIDLVHFALDHQLL 206


>gi|296141182|ref|YP_003648425.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029316|gb|ADG80086.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 213

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 10/214 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        +  L       E VG +       D F     D ++        
Sbjct: 1   MIRVLIVDDQRLIRDSLRMLFDGVDDFEVVGEARDGQQAGDEFARTLPDLVLMDLRMPGA 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              + +               +    F                + +       +   +  
Sbjct: 61  DGIVGIERIKAQDP---DAAVVVLTTFDDDDHLYPALRAGAAGFLAKDIAPEDLLDAVRR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                  +    +  +   A   A            ++ LT RE E L  I +G ++ EI
Sbjct: 118 TLAGDVPLSPATVKRLIGQAL-VARTDAPAPAAAPAEYSLTAREREVLALIGQGLSNAEI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           A  L ++  TV +++ +++ KT + TR      A
Sbjct: 177 AAELHLAVTTVKSHVTNLLAKTDSSTRLQLALLA 210


>gi|126442394|ref|YP_001064239.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126221885|gb|ABN85390.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
          Length = 215

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +     ++         E +      L          +D  
Sbjct: 11  ARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEAL-----TLAEALAPDLALMDIG 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L                     L   +   +           + Y       
Sbjct: 66  MQGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPA 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +                      A               LT RE + L  +
Sbjct: 118 TEIVRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDILDAL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 167 AQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|167758853|ref|ZP_02430980.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
 gi|167663593|gb|EDS07723.1| hypothetical protein CLOSCI_01196 [Clostridium scindens ATCC 35704]
          Length = 207

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 31/232 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIV+  +D   +S +  +    + + R+  +                 G     L R  
Sbjct: 1   MNIVIIDDDVLVSSALKTILESKEEI-RVSGM--------------GQDGGEALRLYREH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +       R +                 L    F      +       
Sbjct: 46  KPDVLLMDIRMKNVSGLAASREILKE--------YPEAKILLLTTFSDDEYIVKALKYGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   I   L  +     +   + + +I  L        +       +  E++
Sbjct: 98  KGYLLK-QDYNSILPALQAVKTGQTVFGTEIIAKIPGL-------LQEKKTFDWEAHEIS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G+E+E ++ ++EG ++ EIA  L +S  TV NYI+SI+ K   + R+    Y
Sbjct: 150 GKELEVISLVAEGLSNKEIAKRLFLSEGTVRNYISSILDKLELRDRTQLAVY 201


>gi|113969929|ref|YP_733722.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113884613|gb|ABI38665.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 220

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 70/236 (29%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ + I++  +     + +    + +   A+    D   +    + +           
Sbjct: 1   MKLENLKIIIADDHPLFRNALRQALSSAFEHAQWYEADSADALQSVLDS----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             +   +    LD  +           + L        V+             +      
Sbjct: 50  --QNVSYDLVLLDLQMPGSHG--YSTLIHLRSHYPELPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      +           A          D    K
Sbjct: 100 IHYGGSGFIPKSASMETLKEALTAVLFGDIWLPAG--------AEIIPIEDDDTDKMASK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|302038541|ref|YP_003798863.1| LuxR family response regulator [Candidatus Nitrospira defluvii]
 gi|300606605|emb|CBK42938.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii]
          Length = 214

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 15/222 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             +    D    +            +    E VGA        D     + D I+     
Sbjct: 5   PRVLLADDHTLVLEGFR------RIVEQRCEVVGAVEDGRALLDAATRLRPDLILLDISM 58

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L    A  +  K    ++    +F  +               + Y         +   
Sbjct: 59  PLLNGVDAARQLKKLLPDVKL---IFVTMHADPAYVSEAFKAGASAYLLKRSAARELEQA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +      ++    +            + +  ELT R+ E L  I+EG+T 
Sbjct: 116 IDSVLKGQYFVTSLLTKDLVTTLS------AGQVGLFAQRQELTPRQREVLQLIAEGRTI 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA +L IS  TV  + A I+     +T +    YA+ + +
Sbjct: 170 KEIASLLNISPKTVEFHKAQIIFHLNLRTTAELTKYALAHGL 211


>gi|75812313|ref|YP_319932.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705069|gb|ABA24743.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 220

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 13/190 (6%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     LV+        +D  +      ++++ +  S+ +    V+         +    
Sbjct: 36  GNEGVELVKSLSPDVALVDIGLPDISGIEVIKQIKKSKSNTK-VVVISCNSCQEVIT--- 91

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                  +   + Y     + + I   +   +    +   + +   GLL  +     K  
Sbjct: 92  ----AAISSGADSYILKKNNTSLIVEAIKSTYNNKSLFDSEIIQR-GLLKIFPTQKAKGK 146

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                 D  LT RE+  L  I+ G ++ +I   L I  NTV N+  +I  K    +R  A
Sbjct: 147 IF----DDHLTQREISVLALIAAGFSNKQIGEKLFIGENTVKNHARNIYSKLGVDSRINA 202

Query: 237 IAYAVRNNIV 246
           I        +
Sbjct: 203 ILKGSELGYI 212


>gi|323529168|ref|YP_004231320.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386170|gb|ADX58260.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 202

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 29/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +   P     +A ++  D  +             G     +V  +      +D  +
Sbjct: 3   RIAIIDDHPIMRGTIANVLRADPELDLVGECGD-----GEEGLQMVLREKPDLVIIDLDL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  ++R +          VL    E     +              N Y     +++
Sbjct: 58  PRLDGLSMIRRIREENLKICILVLSAKPEDVMAGYTRT--------AGANGYVGKGRNMS 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +         D                    V       L+ REVE L  ++
Sbjct: 110 ELITALKTILFGYDCFPADAT----------------GSVPENAFSSLSAREVEVLQHLA 153

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ +IA  L +S  TV+ Y + I  K    + +  I +A  + ++
Sbjct: 154 RGASNRDIASRLYLSDKTVSTYKSRIQEKLGVSSLAALIEFAALHKLI 201


>gi|302877360|ref|YP_003845924.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302580149|gb|ADL54160.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 216

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 60/237 (25%), Gaps = 30/237 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  ++L  +       ++ L      +      +        + +             
Sbjct: 1   MLKTQVMLVDDHAMLRHGMAMLINAEADMEVFAEAEDGGEAVALLES------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  + +   F+L++             +                      
Sbjct: 48  -EYHPDIVLVDLSLKTLSGFELIK-----SMHILIPAMPVLVVSM---HDETVYAERALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      +          +     + F + +       
Sbjct: 99  SGARGYVMKQEPGGVLIAAIREVLKGNFYLS-------QPMYTKLMDRFVTGNSQAELLI 151

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             LT  E E L  I  G +S EIA +L  S  T+  + A+I  K   K  +  I YA
Sbjct: 152 NSLTPSEFEVLHLIGAGHSSQEIARLLSRSIKTIETHRANIRAKLQLKDGADLIRYA 208


>gi|332668029|ref|YP_004450817.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336843|gb|AEE53944.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 212

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 67/218 (30%), Gaps = 21/218 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV-S 79
           S V   P   + L   +     +       ++ +++ A               LD  +  
Sbjct: 7   SIVEDEPMVRESLYDFLNAQEEIEIQAVAKSVEDFLQAP-----SEPAPNVLLLDINLSP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                + +  +                 +    +                Y S T  +  
Sbjct: 62  GISGTEGIPLIRKK-YPDLD-------IIMLTSYEDEEHVFEALRRGAVAYLSKTSSLLT 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I+  ++ +   G  +          +A Y  + F+        D +LT R+ E LT + +
Sbjct: 114 IKEAILTVVNGGSFMSPS-------IARYVVDYFRFRQRITNPDLDLTKRQKEILTCLVD 166

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G++   IA    I+  TV ++I  I +K    +R   +
Sbjct: 167 GQSYKMIADTCNITLETVRDHIKKIYKKLQINSRGELV 204


>gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1
           str. 16M]
 gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1
           str. 16M]
          Length = 235

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 64/227 (28%), Gaps = 29/227 (12%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
             +  + + +G  +          +       D  V    P   V   +         V 
Sbjct: 2   ALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAIDPVF 61

Query: 103 QRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-------- 150
           Q            +   L E+      +         +   +    + +  +        
Sbjct: 62  QEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPKGVAGC 119

Query: 151 -----------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                          L      +  LA                   LT REV+CL W + 
Sbjct: 120 TVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAAN 179

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 180 GKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 226


>gi|304409083|ref|ZP_07390704.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307303086|ref|ZP_07582841.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304352904|gb|EFM17301.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306913446|gb|EFN43868.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 220

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    T +   A+    D   +    +             
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQSVLD------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            VR   +    LD  +           + L        V+             +      
Sbjct: 49  -VRSVDYDLVLLDLQMPGSHG--YSTLIHLRSHYPDLPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      + +    EI  +     +          K
Sbjct: 100 IHYGSSGFIPKSASMETLKEALSAVLFGDIWLPKG--TEIISIDDDAVDKMA------SK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|212638396|ref|YP_002314916.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559876|gb|ACJ32931.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 245

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 14/226 (6%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             + H+    D           +              +    +V    +    LD  +  
Sbjct: 28  DGMIHILIVDDHRLVCEGTKNVLEREGDFQVDIVTSASEAEQIVEQRAYDVCLLDWCMPD 87

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L + +   + +    ++        P  +   E           + S T    ++
Sbjct: 88  MSGIELGKRILQKQPNAK--IVIYIGYDVVPFLNYFVE------FGITGFVSKTASSEQL 139

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        +I    L ++           K      G+   L+  E E L  ++ G
Sbjct: 140 VTAIRCALRDEAVIPVHVLRQLCRCG------AKENMDENGQLAVLSSLEQELLMEVANG 193

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + +IA     S+ T+  +++ I  K    +R  A+  A +  ++
Sbjct: 194 LCNKDIAEKHHTSQRTIERHLSRIFTKLHVSSRIEAVEKAKQLGLI 239


>gi|254392355|ref|ZP_05007538.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442209|ref|ZP_08216943.1| LuxR family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706025|gb|EDY51837.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 222

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +V+  ++    + +  + T    +  +                    G     LVR 
Sbjct: 5   PIRVVIADDEPLIRAGIRMILTSDREIQVVAEASN---------------GREAVELVRA 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  +           +     +    F      +      
Sbjct: 50  HGADVVLLDIQMPVMDGLTAMAELRR--------AVPSARVVILTTFGERDNVLRALEAG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +       A +   +         +       +    A      ++      +  +L
Sbjct: 102 GAGFLLKDTAPAELIAAVRAAAAGDAYLSPGATRHVVDQLATGHAASRNERAR-ERVAQL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE + L+ + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 161 SARERDVLSLLGEGLSNADAGRRLHMSEATVKTYVSRILAKLECENRVQAALLARDAGL 219


>gi|42780933|ref|NP_978180.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC
           10987]
 gi|42736854|gb|AAS40788.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC
           10987]
          Length = 218

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 11  ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 71  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 121

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 122 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 177 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 211


>gi|115359691|ref|YP_776829.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|115284979|gb|ABI90495.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
          Length = 214

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 56/230 (24%), Gaps = 25/230 (10%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
                R   V   P   D L   +             A           L          
Sbjct: 7   DRPAARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLAL 60

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  ++      L                     L   +   +           + Y   
Sbjct: 61  MDVGMNGMNGITLAGVFHER--------FPGIRVLMLSMHDNIEYVTQAVRAGASGYLLK 112

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               + I   +  +                      A               LT RE + 
Sbjct: 113 DSPASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASATASPLDRLTPRERDI 161

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 162 LDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|47565520|ref|ZP_00236561.1| two-component response regulator [Bacillus cereus G9241]
 gi|206974929|ref|ZP_03235844.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|217959320|ref|YP_002337868.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|222095459|ref|YP_002529519.1| DNA-binding response regulator, luxr family [Bacillus cereus Q1]
 gi|229138533|ref|ZP_04267120.1| Response regulator [Bacillus cereus BDRD-ST26]
 gi|229196045|ref|ZP_04322797.1| Response regulator [Bacillus cereus m1293]
 gi|47557510|gb|EAL15837.1| two-component response regulator [Bacillus cereus G9241]
 gi|206746948|gb|EDZ58340.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           H3081.97]
 gi|217063687|gb|ACJ77937.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187]
 gi|221239517|gb|ACM12227.1| DNA-binding response regulator, LuxR family [Bacillus cereus Q1]
 gi|228587427|gb|EEK45493.1| Response regulator [Bacillus cereus m1293]
 gi|228644941|gb|EEL01186.1| Response regulator [Bacillus cereus BDRD-ST26]
          Length = 212

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 204

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 63/227 (27%), Gaps = 24/227 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS 79
             V  +    D       L   +     +  + E   G                LD  + 
Sbjct: 1   MGVIRILIAEDQQVVRGALVALLELEPDLTVVAEVGSGDDVVPAALKHGPDVAVLDIDMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D +   A   +      +     L                     +   T  V  
Sbjct: 61  G--GIDGLDAAAELHRQ-----VPGCRTLVLTGQGRPGHLRRAQGAHVTGFLLKTAPVDE 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R++  +       L                 D  LT RE + L   +E
Sbjct: 114 LITAVRAVAAGRRVLDPNLAVTAWDLG----------------DNPLTPRESDVLRLTAE 157

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + EIA  L +S  TV N++ +I+ K   ++R+ A+  A     +
Sbjct: 158 GAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIAGDAGWI 204


>gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 556

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 68/242 (28%), Gaps = 18/242 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPL----DCTVSWTMRMYALTEYVGASHFLLVRWD 67
           L+ + E     +     R  +L  +         T      M      +    F      
Sbjct: 314 LHSKYELAYIKMDRHFMRLSMLIEIGQAMNVVKDTDEIIRMMTDFVAELAYGDFAFTVL- 372

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               ++   +         V             V QR       +   +P+      G  
Sbjct: 373 -ADHKRKVKVHCGAISEQQVTEYYED-------VCQRYFSTEKRLLENIPKLRETKFGTV 424

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-----ANMFKSYDVHWGK 182
                   +     + + L   +        +  +  +             K        
Sbjct: 425 MEISFSVHEHVHGVMAVHLKDIEAAKEAEVYVAALIGIGTMVMKQNTYQTPKQELNIDML 484

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE++ L  + +G ++ EIA  L IS +TV N+I +I +K     RS  IA   +
Sbjct: 485 SERLTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQ 544

Query: 243 NN 244
            N
Sbjct: 545 LN 546


>gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae]
 gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae]
          Length = 230

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 64/217 (29%), Gaps = 18/217 (8%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               + A  E      +     +     ++  I   +   +        +      V+ +
Sbjct: 15  IQNELNAFFEDYKGIIYAYAIMNKKDPSQMRII---NNNPEWFDIYLERKYQFIDPVIIQ 71

Query: 105 PTELFCPVFHTLPENITPPAGMDNRY------------CSLTFDVARIRIGLMLLFPKGR 152
                   F      ++    +   +                 D       L ++  K  
Sbjct: 72  SLRCVEDFFWENNVILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDS 131

Query: 153 IILRDRLW-EIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVI 209
            I  ++   +I            +        K+  L+ RE + L W+  GKT  E+AVI
Sbjct: 132 GIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVI 191

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L I+  TV   + ++M+K      + A+       ++
Sbjct: 192 LSIAERTVKFLMGNVMKKLGVNNATHAVKLGTELRLL 228


>gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 229

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 18/202 (8%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
                  LT Y      + +  +    Q +D ++   +            ++    V   
Sbjct: 29  LAGVARILTPYQDRVRVVEIDTNRPVAQDVDIVLYDSFAQP-----EAGGEELADIVANE 83

Query: 105 PTELFCPVFHTLPE--NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            T           E    +  A   + Y S T     +   L  +     ++        
Sbjct: 84  HTGRVVIYTWNFHETLVESALARGASGYLSKTLAARELVAALEAVHAGEVVVSPP----- 138

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                   +   +     G+   LT RE E L  I++G+++ E+A I  +S NTV +YI 
Sbjct: 139 ------PRSRTVAGLDWPGRGEGLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIR 192

Query: 223 SIMRKTATKTRSGAIAYAVRNN 244
           ++ RK    +RS A+ + V + 
Sbjct: 193 TLYRKIGVTSRSQAVLWGVNHG 214


>gi|326333357|ref|ZP_08199604.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
 gi|325949001|gb|EGD41094.1| DNA-binding response regulator, LuxR family [Nocardioidaceae
           bacterium Broad-1]
          Length = 253

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 67/236 (28%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L    +     V  +  R   +  +            +  L               
Sbjct: 2   ISVLLADGHDVVRVGVRTVLRRESDIEVVGEARTAAEARPLIATL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD+ +       L R     + D    +L                         
Sbjct: 47  RPDVLILDAHLPDSSGVALCREALAMKSDIRCLILA--------TDADDEVMSQAIMAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     +   +  G+ L+     +   +        AA   +  +          ELT
Sbjct: 99  AGYVLKQIEATSLVSGVRLVASGHTLFDPEA-------AAKVVHNVEERRRMHEVVAELT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++   L  ++EG ++ EIA  L ++  TV N+I  ++ K     R+ A   A + 
Sbjct: 152 PQQRRILVLLAEGISNREIADRLVLAEKTVKNHITGLLAKLGVSHRTQAALMASQL 207


>gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia
           coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia
           coli [Photorhabdus asymbiotica]
          Length = 242

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 18/224 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                +     + +  G S F L+    F     +    +++           +      
Sbjct: 19  DAHFVSEVFEIINKISGFSLFSLILKARFPISNREVYFFNNYHESWRNLYIERKYWMIDP 78

Query: 101 VL--QRPTELFCPVFHTLPENIT---------PPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            L  +     F  ++     + +            G  +         +       +   
Sbjct: 79  TLNFRPVPPSFSKIWDLDFFSESNGQELWYVSQKHGFRSGITFGLPAFSGTYGIFSVAGK 138

Query: 150 KGRII-------LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            G I          + L     +  Y  +  K     +  +   + RE+E L + ++G T
Sbjct: 139 DGHIDNETMYKCSGEILGVYIRIIRYLTSHTKYLQFFYVDETSFSNRELEVLRYTADGMT 198

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EIA+ + ++++TV+ ++ +I++K   + +  AIA AV    +
Sbjct: 199 SSEIALTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAVLLGYI 242


>gi|229102432|ref|ZP_04233140.1| Response regulator [Bacillus cereus Rock3-28]
 gi|228681079|gb|EEL35248.1| Response regulator [Bacillus cereus Rock3-28]
          Length = 212

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 27/216 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVDYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I        N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------CNLMESKEDECKIDTSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|78187407|ref|YP_375450.1| two component LuxR family transcriptional regulator [Chlorobium
           luteolum DSM 273]
 gi|78167309|gb|ABB24407.1| two component transcriptional regulator, LuxR family [Chlorobium
           luteolum DSM 273]
          Length = 214

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 28/220 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           ++  D     T  + ++ +  G            +  ++ +       D I+      + 
Sbjct: 7   ILIADTQFLTTEALRSMLDAEGYGMSVVHTRTELYEYLKANEPSLIITDYILFDFRSIND 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R +          +L               +               T D   +   +  
Sbjct: 67  LRELGE--LHDGSPILVLCNS------VNQMQIKELNQAGIRNIALKTDDRTELLQSVTT 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                +      L           ++    D        LT  E+E +  IS G T+ EI
Sbjct: 119 AMKGKKAYSGSVL-----------DILLKEDGPAEDACLLTTSEIEIVRLISTGLTTKEI 167

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           AV   +S +TV  +  +I RK    +    + +A++  ++
Sbjct: 168 AVKKHVSFHTVTTHRKNIFRKLGVSSSPELMMFAIKAGLI 207


>gi|148254518|ref|YP_001239103.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146406691|gb|ABQ35197.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 233

 Score = 98.8 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 55/230 (23%), Gaps = 17/230 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R  F    P   D +  +I  D  +             G +              LD 
Sbjct: 18  RIRVFFADDHPIVLDGIKALIAEDAQLDLVGSA-----LDGPTALRRAIDLRPDVVVLDL 72

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      ++ R +                 L   V                 Y      
Sbjct: 73  SMPGMSGIEVARKLLA--------ACPSSRVLLLTVHEDAAYFRQALEIGIVGYVLKRTA 124

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +  G+  +      +           A                  EL+ RE E    
Sbjct: 125 TEELNRGIHAVAAGAVYLDPAIAERALGTA----ARQIPIRADALSGVELSLREAEVARL 180

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G ++  IA+ L I   +V  Y    M K   ++R   I YA+    +
Sbjct: 181 TAAGYSAKTIALKLQIGVKSVETYKKRCMTKLGFQSRVELIHYAIGKGWL 230


>gi|289679770|ref|ZP_06500660.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
          Length = 188

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 50/192 (26%), Gaps = 14/192 (7%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G     L          LD  +         R +           +     +   +  
Sbjct: 3   ADGQQAIDLCLELQPDIAILDIRMPVLNGLGAARILQQR--------MPGLKVVIFTMDD 54

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +        +     Y         +  GL  +      +       +         M +
Sbjct: 55  STDHLEAAISAGAVGYLLKDASRDEVIDGLQRVARGEEALNSAVSARL------LRRMTE 108

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE + L  ++ G ++ EI   LGI+  T   ++  ++ K     R+
Sbjct: 109 RNTSGAALPETLTPRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRT 168

Query: 235 GAIAYAVRNNIV 246
            A    V   +V
Sbjct: 169 QAAVRGVALGLV 180


>gi|284032256|ref|YP_003382187.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283811549|gb|ADB33388.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 217

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 72/234 (30%), Gaps = 28/234 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +++  ++    +F+  +   S  +  +   +                GA+    V  
Sbjct: 8   PVRVLIVDDEPMVCAFLRTILDGSGHVEVIGTAED---------------GAAAVESVIR 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D      +D  +           +          V+          F T    +      
Sbjct: 53  DRPDVVLMDLRMPGVDGVAATAEVRSL---PEPPVVV-----VMTTFDTDDHLLAALDAG 104

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y   +   + +   ++       ++  + +  +  LA        +      +   L
Sbjct: 105 AAGYLLKSTPTSTLVQLVLAAAAGASVLSPEAVHRLRDLAN-----SSTPTDPDPQLEAL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +GRE E L  + EG ++ +IA  L +S  T+  +++ +M     + R+     A
Sbjct: 160 SGREREILALLGEGLSNADIARRLYLSEGTIKGHVSRLMADLDCQNRTQLALRA 213


>gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 207

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 68/235 (28%), Gaps = 39/235 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ + +  ++    S +  L  R    +         +    +               
Sbjct: 2   AGKIEVTIADQNPVVRSGLEALVQRDGRFSVCGVHATGEALIEALKT------------- 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   +   +      +++  +   +         R   +      +         
Sbjct: 49  --KPVEIAIVGWTLPDMTGGNVLTRLKQEKW--------RTRVVIYTGERSSEVLRQAIK 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G    + S T +   +   ++ +      +    +  +                +     
Sbjct: 99  GGAWGFVSKTEEPQVLLEAVVSVARGRLSLPYVDIDLL----------------NHDPLE 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT RE E L  ++ G T+ +IA   GISRNTV  ++ ++  K     R+ A+A 
Sbjct: 143 GLTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVAL 197


>gi|167741028|ref|ZP_02413802.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|217423036|ref|ZP_03454538.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|217393944|gb|EEC33964.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
          Length = 220

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + + H       +  +     +      +                  
Sbjct: 6   IKVVIADDHPAVLTGLLHALAPVSSIEVVSACKNSTELLTALNEY--------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +  D   D +   +  ++      L   T +  P            +   
Sbjct: 51  PCDVVISDYNMPDDNFGDGISLFSYIQRRYPSTRLIALTMISNPAIIH-----NLISHGI 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S + ++  I   +   + KG  +      E  + + +              + +L+
Sbjct: 106 STVLSKSDEIGHIIAAIHASYAKGSYLSPTI--ETIVNSGH--------GKSPDGEVQLS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +   + G + +EIA  L  S+ T+++  A+ MRK    +    + YA++  +V
Sbjct: 156 PREIEVVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGVNSDIDLLKYALKAKLV 214


>gi|71282148|ref|YP_268761.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147888|gb|AAZ28361.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 208

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 64/226 (28%), Gaps = 22/226 (9%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P     +  ++     V          E        L+   L     LD  +  
Sbjct: 5   VIVDDHPLFRQGIRLLLESSGNVEVIGDASNAIEGE-----RLIMGKLPDVAVLDIGLVG 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L   +          ++         +F                Y         +
Sbjct: 60  ESGLQLAEKLRARGYKN--AIVMVTMHTEVSIF-----KRAAAIAKVEGYVLKLDAAEDL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +       + +      E+  +           D     D  LT RE E L  I++G
Sbjct: 113 ENAVYRACNGQKFVSPSLAQEMAWM----------EDDSQKTDSLLTKREEEVLILIADG 162

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             SD IA+ L +S+ T++++ A+I +K           YA+   ++
Sbjct: 163 LGSDAIALRLDLSKRTIDSHRANIRKKLGLTNSVELTRYAIEQGLI 208


>gi|84502331|ref|ZP_01000479.1| two-component response regulator [Oceanicola batsensis HTCC2597]
 gi|84389691|gb|EAQ02410.1| two-component response regulator [Oceanicola batsensis HTCC2597]
          Length = 213

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 72/228 (31%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +  +      L  ++             +L E  G           F    +D  
Sbjct: 3   MRAFILEDIAETCAWLGDLLREAYGEVDIETAASLREAHG------HTGPGFDLALIDLG 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++R M  +  +           +   V       ++  +   + Y       
Sbjct: 57  LPDGSGLDVLRRMKATAPETLC--------IVTTVMGDDATVVSALSAGADGYLLKEQPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +      +          +A    + F+      G+D  LT RE E L  I
Sbjct: 109 AILIRQLRQIMDGVPALSPA-------IARRIMHHFRLTGPLTGQDAALTDREREVLGLI 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G  + E+A  LGI+ +TV  Y+    RK    +R+ A  +A R  +
Sbjct: 162 GRGLRNAEVAAELGIAVSTVAGYVKDTYRKLGISSRAEAAWHATRLGL 209


>gi|331661923|ref|ZP_08362846.1| fimbriae Z protein [Escherichia coli TA143]
 gi|331666890|ref|ZP_08367764.1| fimbriae Z protein [Escherichia coli TA271]
 gi|331060345|gb|EGI32309.1| fimbriae Z protein [Escherichia coli TA143]
 gi|331066114|gb|EGI37998.1| fimbriae Z protein [Escherichia coli TA271]
          Length = 194

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 17/187 (9%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
               +R        +D  +     F  ++ +   +             LF          
Sbjct: 25  TIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYA 76

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                   N + S   D   I   + ++         + L  I                +
Sbjct: 77  GRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTN 127

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I Y
Sbjct: 128 SSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDY 187

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 188 AKLYELI 194


>gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis]
          Length = 217

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 3/127 (2%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +    G    +        ++   +  L     ++  +      ++         + + 
Sbjct: 88  VLESLRGGACGFLLKDSQPEQLVAAVRALASGVTVLAPEA---SSIMLGAACRGTPAAEN 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  +L+ RE   L  I +G T+ EIA  L IS +TV  Y++ I+RK     R  A  
Sbjct: 145 AVDEVKQLSDREQAVLGLIGQGLTNAEIAGRLFISDSTVKEYVSVILRKLGVANRVQAAV 204

Query: 239 YAVRNNI 245
            A    +
Sbjct: 205 LAYAAGL 211


>gi|241766322|ref|ZP_04764211.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241363555|gb|EER58994.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 210

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +S  + +    E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLRQFLSEHVDLRVEGEAGNGREAIDLVRNHEIDVLLMDLSMPGQSGLDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        I       + Y +   + + I   +  +
Sbjct: 67  AMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECEPSEIVEAIRTI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R +       +                      +L+ RE +    +++G+T+ +IA
Sbjct: 119 ALGRRYLTPAVAELLAQQLNR--------KDDAPPHEQLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K +  + S    YA++N ++
Sbjct: 171 KALSLSVKTVSTYRTRLMEKMSLSSNSDLTYYALKNRLI 209


>gi|148985585|ref|ZP_01818774.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147922305|gb|EDK73426.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800762|emb|CBW33411.1| response regulator protein [Streptococcus pneumoniae OXC141]
          Length = 199

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTL--QPDVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +     +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRSERLETKVVVV--------TTFKRAGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +                 +V   +   LT +E+  L  I
Sbjct: 108 ADLMQTLHTVLEGRKEYSPELM-----------------EVVMTRPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L  S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYFSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|50841778|ref|YP_055005.1| putative two component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289424613|ref|ZP_06426396.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428869|ref|ZP_06430549.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129857|ref|YP_003580520.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|50839380|gb|AAT82047.1| putative two component response regulator [Propionibacterium acnes
           KPA171202]
 gi|289155310|gb|EFD03992.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157870|gb|EFD06093.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377028|gb|ADE00883.1| transcriptional regulator, LuxR family [Propionibacterium acnes
           SK137]
 gi|313765254|gb|EFS36618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772831|gb|EFS38797.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793147|gb|EFS41214.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802765|gb|EFS43983.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313810971|gb|EFS48685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814529|gb|EFS52243.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815274|gb|EFS52988.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817452|gb|EFS55166.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821963|gb|EFS59677.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824141|gb|EFS61855.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826508|gb|EFS64222.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828689|gb|EFS66403.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831737|gb|EFS69451.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313840427|gb|EFS78141.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916093|gb|EFS79924.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917014|gb|EFS80845.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921290|gb|EFS85121.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926624|gb|EFS90455.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931048|gb|EFS94879.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954999|gb|EFS99405.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959039|gb|EFT03141.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961312|gb|EFT05413.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314969658|gb|EFT13756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974723|gb|EFT18818.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977081|gb|EFT21176.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980344|gb|EFT24438.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985519|gb|EFT29611.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987345|gb|EFT31436.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989114|gb|EFT33205.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078425|gb|EFT50456.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082108|gb|EFT54084.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082749|gb|EFT54725.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086107|gb|EFT58083.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087692|gb|EFT59668.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097354|gb|EFT69330.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099459|gb|EFT71435.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102036|gb|EFT74012.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315106352|gb|EFT78328.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|315110138|gb|EFT82114.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331360|gb|EGE73099.1| two-component system response regulator [Propionibacterium acnes
           HL096PA2]
 gi|327333346|gb|EGE75066.1| two-component system response regulator [Propionibacterium acnes
           HL096PA3]
 gi|327334866|gb|EGE76577.1| two-component system response regulator [Propionibacterium acnes
           HL097PA1]
 gi|327445636|gb|EGE92290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447259|gb|EGE93913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449709|gb|EGE96363.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454559|gb|EGF01214.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456630|gb|EGF03285.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457093|gb|EGF03748.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755614|gb|EGF69230.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756694|gb|EGF70310.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758376|gb|EGF71992.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761883|gb|EGF75393.1| two-component system response regulator [Propionibacterium acnes
           HL099PA1]
 gi|332674696|gb|AEE71512.1| putative two component response regulator [Propionibacterium acnes
           266]
          Length = 218

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 61/242 (25%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +D      V  +   +D L  +           +                
Sbjct: 1   MLPVRVLLVDDDTLVRRAVRQILEAADDLEVVGEASDGDGAVRQA--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S              +                
Sbjct: 46  --PQADVVLMDLRMPGMSGVEATSRITHSPSSP--------KVVVLTTVTADAAITDAVH 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         I   +  +      +      ++ L         +          
Sbjct: 96  AGASGFLLKASSPDDIVNAVRAVHAGDAFMSPTSTRQL-LEQLRGDAGRRVRGAARKTLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++EG T+D IA  L +S +TV  ++++I  K    +R        R  
Sbjct: 155 ALTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVDSRVRIAVLVERAG 214

Query: 245 IV 246
            +
Sbjct: 215 YL 216


>gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis
           KT71]
 gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis
           KT71]
          Length = 222

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 71/239 (29%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +V+  +       +  L +    +A +     +      +   T   G      ++  
Sbjct: 10  TTVVIADDHSIIRDAIYDLLS----VATLPGAADSPGNFEIVG--TAENGLEAIAAIKAK 63

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +    +    +      +   T +  P                
Sbjct: 64  RPGLLFLDVSMPLAGGAE---IIHDVRRWSPDTRIVIFTGVTSPSV-----LAGILEAGA 115

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S       +   L L+    R +  +                        +   LT
Sbjct: 116 DAIFSKLSPARDMLAKLPLILMGERYVAPELT---------------DIIRKGQQGETLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE + L  I  GK++ EIA  L IS  TV  +  S+M K    + +  +A A+++ ++
Sbjct: 161 GRERQVLNMIVMGKSNKEIAQELNISPKTVEKHRGSVMLKLEVHSVAQLMARALKDGLI 219


>gi|188509913|gb|ACD56605.1| GacA [Pseudomonas tolaasii]
          Length = 213

 Score = 98.8 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++    +   + ++ +    D L  +   +                G    +  R  
Sbjct: 2   IRVLVVXXXDLVRTGITRMLADIDGLQVVGQAES---------------GEESLIKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +  S  D    V+              P          
Sbjct: 47  KPDVVLMDVKMPGIGGLGATTKLLRSHPDIKVVVVTVC--------EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +A +   + L+F   R I      ++        +   + D  +     L+
Sbjct: 99  AGYLTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLA-----IKSFQPTSDSPFDA---LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    I   +    I+  L +S  TVN Y   I  K A  +       AVR+ +V
Sbjct: 151 EREIQIALMIVGCQKVQTISDKLCLSPKTVNTYRYRIFEKLAISSDVELTLLAVRHGMV 209


>gi|323494771|ref|ZP_08099870.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323310964|gb|EGA64129.1| two component LuxR family transcriptional regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 219

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 16/218 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                  P   D +  ++      S T     +   +  +              +D I+ 
Sbjct: 4   VLIADDHPLFRDAIVHILASQFPNSTTYETEDIASTIEFAK---------DNDDIDLIML 54

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +     L +                     + + I         + + +     
Sbjct: 55  DLNMPGMTGLNGLLDLINECPTTPVVVVSAENKKQVILQTIAY---GAVGFIAKSSSKEV 111

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +      +  D +      A    ++ +   +       LT R++  L  +++
Sbjct: 112 IAEAIENVLEGNIYLPADIIRTQATTA----SVKQESPLTPEMLSSLTRRQLMVLKCMTK 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G+ + +IA  L +S  TV ++++SI++K     R  A+
Sbjct: 168 GEANKQIAYNLNVSETTVKSHVSSILKKLGVTNRVQAV 205


>gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli
           EPECa14]
          Length = 123

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 5   DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 52

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT  E E L  I++GKT+ EIA  L +SR TV  +  +IM+K    +    I
Sbjct: 53  SRYSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELI 112

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 113 KTALRMG 119


>gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 247

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFE--------LTGREVECLTWISEGKTSDEIAVILGIS 213
           + L+  +                         +T RE E L W+  GKT+ EI+ IL IS
Sbjct: 151 LELIMPHLHCALVRITSSRSNVVINTAAIANIMTKRESEILQWLHMGKTNWEISSILDIS 210

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + TV N++ +I+RK   + RS A   A +  ++
Sbjct: 211 QLTVKNHVQNILRKLDVQNRSQAAVKAAKLGLI 243


>gi|256420600|ref|YP_003121253.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035508|gb|ACU59052.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 222

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 70/249 (28%), Gaps = 32/249 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLAR---MIPLDCTVSWTMRMYALTEYVG 57
           M    +++NI L  +       +  L    D   +   +   +       +M        
Sbjct: 1   MKNASKKINIALVDDHNLFRKGLIKLINMGDPQQKYNILFEAENGNDLKDKM-------- 52

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
                 ++        +D  +     ++ V  +  +        ++           +  
Sbjct: 53  ------MQPPFPDIILMDIDMPDMDGYEAVDWLQRTH-----PSVKVLVVSM---VESEN 98

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +         Y S   +V  +   L  +   G          +               
Sbjct: 99  AILRMLRLGVKGYLSKDIEVEDMNRALEAIASNGFYYSEIATEVL-------NQNLMGNI 151

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+  E E L   +   T  +IA  + +S  T++ Y  ++ +K   KTR    
Sbjct: 152 KPNPASLYLSENEREFLKLATTEMTYQQIADKMNLSPKTIDGYREALFQKLNVKTRVTMA 211

Query: 238 AYAVRNNIV 246
            YAV++ IV
Sbjct: 212 LYAVKHGIV 220


>gi|227114179|ref|ZP_03827835.1| two-component response regulator [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 213

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +    D L+ +           ++ ++T              
Sbjct: 5   IRLMIADDHVIMREGLKQIFALDDSLSVVAEAGNGAQVLAQLRSVT-------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L+  +             R   L   ++              
Sbjct: 51  -PDLLLLDMSMPGISGEALISRVVAQ--------YPRLPILVLSMYSEAQIAQHALKSGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I      ++        + +   D        LT
Sbjct: 102 RGYITKDKDPEALLSAIRRVAQGARYIDHTIAEQL------VFSNYTEGDRAAHD--VLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +   ++G   + IA  L IS  TV+ + A +M K    T    + Y V   ++
Sbjct: 154 AREHQIMIMFAQGMGINAIANELAISNKTVSTHKARLMEKMQFSTNVEIVKYVVSKKLI 212


>gi|70730322|ref|YP_260061.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344621|gb|AAY92227.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 208

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 66/221 (29%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       +  T+             G S   ++         LD  +       
Sbjct: 5   VLIVDDHPVVCEAIRKTLESQGYTIVGETADGISALNMILSLRPDIVILDVSLEKMDGLT 64

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +++ +A +  D           L           +       + + S    + ++   + 
Sbjct: 65  VLKRIAQANLD--------VRVLVFTAQSVDTYAMRCLQAGASGFVSKNEPLTKLLKAVD 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +        +  +           +              LT RE+E L  ++EG T+ E
Sbjct: 117 TIVEGYVFFPKKSMP---------FSDGGRGKHSSDVLAALTNRELEVLKLLAEGLTNLE 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV+ +  +I+ K    +    +  A +N +V
Sbjct: 168 IAEKLHLSNKTVSGHKINILSKLGVTSVVDLVNIARQNELV 208


>gi|330976162|gb|EGH76228.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|330982505|gb|EGH80608.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 220

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L         +               L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADMPGYTILGETADGSQLASLAQRL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S      +  +          V      L     +     +        
Sbjct: 49  PDIILLDICMKSIDGLVALEHLLK--------VQPHCKVLILSAQNDPDMIMRTLDIGAQ 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A +   L  L    R +       +  +                + F LT 
Sbjct: 101 GYLLKDTTAAELEQALEALRGNERYLSPAIAQMV--IECALRGTPSDRAQAAKERFRLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRERII 216


>gi|255535463|ref|YP_003095834.1| hypothetical protein FIC_01324 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341659|gb|ACU07772.1| hypothetical protein FIC_01324 [Flavobacteriaceae bacterium
           3519-10]
          Length = 214

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 69/241 (28%), Gaps = 28/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + I +  + +  +  + ++ + +     ++       +  ++               
Sbjct: 1   METIKIAIVDDHKLVSKAIENMISYNPNFDVIMNSANGQDFLDQLR-------------T 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D      +D  +      +    +             +   +   +       I    
Sbjct: 48  AQDFPDVVLMDINMPIKNGIETTAELTKE--------FPQLKVIALTMEDHEGTIIKMLK 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   + ++  KG          +  +                   
Sbjct: 100 AGAKGYLLKDMSPDILFDAIDIVHKKGIFYTDLVTQSLLKI-------KTEEKFMETLSD 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE+E +       T  EIA  + +S  T++ Y  S+  K   K+R G + +A+++N
Sbjct: 153 TLKDRELEFIRLACSELTYREIADQMFVSPRTIDGYRDSVFVKLNVKSRVGIVLFAIKHN 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|209515178|ref|ZP_03264046.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209504432|gb|EEA04420.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 208

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 21/218 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D    +   +  L            +        L ++Q  D ++        
Sbjct: 1   MTRILLVDDHTIFRSGLRRLISDKPEYCVAAEASNSAEALSLVRDQDFDVVILDINLNGR 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                L    +    L+       P                N Y S       +   L  
Sbjct: 61  SGLEVLESIRRTKPNLRVLVMSMYP---EAQFGAEAVRLGANGYLSKDTTPDALFDALRS 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                R             A       +         + L+ RE++ L  I  GK+  EI
Sbjct: 118 AAQGRRP------------ARAALASVEEDSESRPPHYSLSARELQILQLIVSGKSLTEI 165

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             ++ IS  T + Y + I+ K    + +  I YA+RN 
Sbjct: 166 GRLIFISVKTASTYRSRILSKLNLTSNAQLIDYAIRNG 203


>gi|56420621|ref|YP_147939.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261420284|ref|YP_003253966.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529750|ref|YP_003671025.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767094|ref|YP_004132595.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56380463|dbj|BAD76371.1| two component response regulator [Geobacillus kaustophilus HTA426]
 gi|261376741|gb|ACX79484.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|297253002|gb|ADI26448.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
 gi|317111960|gb|ADU94452.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 209

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 62/221 (28%), Gaps = 19/221 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     +  + E   G     L          LD  + +    
Sbjct: 3   VLIVDDHDLIRKGIRLLLEGFPDVEVVGEASNGCDAITLALKHHPDVVLLDLSMPT---- 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +     ++        +        +               + Y         +   L
Sbjct: 59  -GLDGFTTAKTIMDELDTKIV---VLTMHDEEIYVQKALQHNIHGYLLKNSQTNDLYKAL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R        E            +   +       LT RE E +     G T++
Sbjct: 115 KAVCRGERFYRTHIPQE----------KLEKIIMEKEPRSPLTNREREIVRLTFLGYTNN 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L IS  TV ++ A+IM+K   K +   I YA++N I
Sbjct: 165 QIANKLKISPKTVESHKANIMQKLGIKEKHELIQYALKNQI 205


>gi|268316682|ref|YP_003290401.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
 gi|262334216|gb|ACY48013.1| two component transcriptional regulator, LuxR family [Rhodothermus
           marinus DSM 4252]
          Length = 234

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 18/230 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            + D  R   V   P   + L+  I     +    +     E      F L+  +     
Sbjct: 12  AQSDRIRVVIVDDHPAIREALSDTINSAMGMEVVGQASTAAEA-----FRLIEKERPTVA 66

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      DLV+ +                 +   ++              + Y  
Sbjct: 67  VVDISLEDAHGLDLVQNIRAQ--------FPEVLVVIFSMYDESVYAERAIRAGASGYLM 118

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +     +   +  +      + R     I  L+                  ELT RE+ 
Sbjct: 119 KSEPTQSVVEAIRAVVRGEVYLSRRMASRI--LSKVAMGRAPGPGFAID---ELTDREMA 173

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
               + +G T DEI   L +SR TV  Y      K    + +  + +AV+
Sbjct: 174 VFQMLGQGYTIDEITERLNLSRKTVETYRRRAKEKLGFDSVAELLQFAVQ 223


>gi|167748926|ref|ZP_02421053.1| hypothetical protein ANACAC_03707 [Anaerostipes caccae DSM 14662]
 gi|167651548|gb|EDR95677.1| hypothetical protein ANACAC_03707 [Anaerostipes caccae DSM 14662]
          Length = 206

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D+  ++ +  +             + +      + AL    GA    L    
Sbjct: 1   MKIIIVDDDKLVSASLKTIL------------ESSGDV--HVQALGSS-GAEAVSLYELH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +S     +  R +     D           LF   F      I       
Sbjct: 46  HPDVLLMDIRMSGMNGIEAAREIRRKYPD--------SKILFLTTFSDDEYIIDALNIGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   I   L  +     +   +       + +   ++  S       D+ ++
Sbjct: 98  KGYILK-QDFESILPALHAVENGQNVFGNE-------IISKIPDLLSSKQHFSYSDYGIS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E+  + +I++G ++ EI+  L +S  T+ NY++ I+ K   + R+    +  ++
Sbjct: 150 EKELRLIEYIAKGMSNKEISECLFLSEGTIRNYLSVILEKLELRDRTQLAIFYYQH 205


>gi|59713286|ref|YP_206061.1| two component response regulator [Vibrio fischeri ES114]
 gi|59481534|gb|AAW87173.1| two component response regulator [Vibrio fischeri ES114]
          Length = 205

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 32/208 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR----WDLFQEQKLDSIVSSDWPFDLV-RCMALS 93
           +D  +S    +  + E  G S +         D          +      +L  + +   
Sbjct: 16  VDDELSVRESLVFMLEGYGLSVYEFCSGRAFLDSVDVSTPGCAILDSRMPELRGQDVHEL 75

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM--LLFPKG 151
            K +        + +F      +P  +         +     D   + I +   L   + 
Sbjct: 76  LKQQNSP----LSVIFLTGHGDIPMAVDALKAGAADFFQKPVDGEELFIAIKNGLAASEK 131

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R   +D                            LT RE E L  I +G  + ++A  + 
Sbjct: 132 RYKSQDA---------------------HRSYLSLTAREQEVLKLIVQGMKNQQMADAMC 170

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +S  T+  + +++M+K    +    I  
Sbjct: 171 VSLRTIEVHRSNLMKKLGVNSVVDLIMR 198


>gi|71733679|ref|YP_275938.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487038|ref|ZP_05641079.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289625994|ref|ZP_06458948.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289651490|ref|ZP_06482833.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488235|ref|ZP_07006270.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554232|gb|AAZ33443.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157243|gb|EFH98328.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323080|gb|EFW79169.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329648|gb|EFW85637.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330868582|gb|EGH03291.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330878032|gb|EGH12181.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|331009320|gb|EGH89376.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 215

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L       AR++  +       R+    ++             
Sbjct: 5   ILIADDHPLFRSALHQALSIGLGPEARLVEAESIAQLESRLGEKADW------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASIVVRSREFGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +                       ++             LT 
Sbjct: 103 GFIPKSSPLEVIQQAVRTVLDGDVWWPPQV--------NEVISVSDEAKAASAGLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 155 QQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 205


>gi|324997312|ref|ZP_08118424.1| response regulator receiver protein [Pseudonocardia sp. P1]
          Length = 213

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  + E   +    + +    +  +                    G     + R  
Sbjct: 3   IGVVLADDQEMVRTGFRLILSAESDIEVLGEAGT---------------GDDAVAVAREL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +A         V+          F              
Sbjct: 48  RPDVVLMDIRMPGIDGIAATRTLAADPAPPRIVVV--------TTFDLDEYVYGALRSGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +        ++       +         + +           L+
Sbjct: 100 CGFLLKDAGPRLLVEAVRAAAAGDALVSPSVTVRL------LEQLTEPPPPRAEPAVALS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+T+ EIA  L +S +TV  ++ +I  K   + R    A+A  N +V
Sbjct: 154 ARELDVVRAVARGRTNHEIAGDLFVSLSTVKTHLTNIGSKLDARNRVEIAAWAWENRLV 212


>gi|313834382|gb|EFS72096.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
          Length = 218

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 61/242 (25%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +D      V  +   +D L  +           +                
Sbjct: 1   MLPVRVLLVDDDTLVRRAVRQILEAADDLEVVGEASDGDGAVRQA--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S              +                
Sbjct: 46  --PQADVVLMDLRMPGMSGVEATSRITHSPSSP--------KVVVLTTVTADAAITDAVH 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         I   +  +      +      ++ L         +          
Sbjct: 96  AGASGFLLKASSPDDIVNAVRAVHAGDAFMSPTSTRQL-LEQLRGDAGRRIRGAARKTLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++EG T+D IA  L +S +TV  ++++I  K    +R        R  
Sbjct: 155 ALTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVDSRVRIAVLVERAG 214

Query: 245 IV 246
            +
Sbjct: 215 YL 216


>gi|302038025|ref|YP_003798347.1| putative LuxR family response regulator [Candidatus Nitrospira
           defluvii]
 gi|300606089|emb|CBK42422.1| putative Response regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 235

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 73/240 (30%), Gaps = 16/240 (6%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLAR-MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++R  E +T+ V  + T + LL   +  +     W   +            L        
Sbjct: 1   MSRIVEIQTTTVVAIVTNNYLLRLGLQKIVDDAKWIRLVGQTAHAGNLDEILTSEQPHIV 60

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               +         DL++ +          V      +    F          A   +  
Sbjct: 61  ILDTE---IGGAAPDLIQQIKR--------VAPGVKTILLSGFDDTECTRQALASGVDGI 109

Query: 131 CSLTFDVARIRIGLM-LLFPKGRIILRDRLWEIGLLAAY---QANMFKSYDVHWGKDFEL 186
                  A +   +  L    G ++L        L  ++    +               L
Sbjct: 110 VLKVQPSAVLIATITYLADSGGEVVLPIGNRPTPLKLSHTPALSTAPLPPPAPTKWSDGL 169

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E +  ISEG ++ +IA  L IS  TV +++ SI  K     R   +  A +  +V
Sbjct: 170 TEREREVVRLISEGLSNKDIADRLCISSITVRHHLTSIFDKLGVSNRQKLLIRAHQQGLV 229


>gi|254513468|ref|ZP_05125533.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
 gi|221532472|gb|EEE35468.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium KLH11]
          Length = 204

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S         A +        +   M  L+             D
Sbjct: 1   MRILLADDHGLVRDTISSYLETEGRAAVVAV----PDYMAAMKTLS-----------SED 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT--PPAG 125
            F    LD  +      D +             + Q P + F  +  T P  I       
Sbjct: 46  PFDLVLLDFEMPGMNGIDGLS----------DAITQFPEQAFAILSGTAPNKIAQQAVEM 95

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   T     +   +  +      +    L   G +     +             +
Sbjct: 96  GAVGFLPKTMGAKSLVNAVRFMIAGETFVPASVLSMDGDVEESDFSR------------Q 143

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE + L  +  G+++ EIA  L +   T+  ++ ++ +K   K R+ A   A    
Sbjct: 144 LSQREKQVLRGLCRGQSNKEIARALDLQEVTIKLHVRTLCKKLNAKNRTQAALIARDAG 202


>gi|152987185|ref|YP_001347466.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150962343|gb|ABR84368.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 207

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 27/224 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG----------ASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++R++ +D      M M  L E  G               L R        LD  +    
Sbjct: 1   MSRILIVDDHPVIRMAMKMLLEAEGHQIVGDTDNGVDAISLGRELKPDLVILDIGIPRLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  + +               L           +         +      +A +  
Sbjct: 61  GLEVISRLTVLGLP--------VKILVLTGQSASLFALRSMQAGAAGFVCKQGGLAELVT 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           +  +   A         Y         L+ REV  L ++S+G +
Sbjct: 113 AVNAVASGYSYFPSSAMRPVQQGA---------YSDDVELLGRLSDREVSVLQYLSQGYS 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I+  + IS  TV+ Y A ++ K    +    I +A RN ++
Sbjct: 164 NKQISEQMFISNKTVSTYKARLLLKLNAGSLVDLIEFAKRNALI 207


>gi|149925651|ref|ZP_01913915.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149825768|gb|EDM84976.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 218

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 63/222 (28%), Gaps = 18/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D           +        + E   A   +   + +L      D  +     
Sbjct: 7   RILLVDDHAVVRAGYRHLLETQGGFKQVREAENAQEAYSTCQKELPGLIICDISMPEPVG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +LV+          +  ++          +++             Y + +     +   
Sbjct: 67  LNLVQR-----VLGRWPEVKFLMFTM---HNSIELARACMDAGAKGYVTKSSRPEVLLRA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I  D    + L      +  +          EL+ RE E L  +  G+++
Sbjct: 119 IGEVLAGRTFISADLSRLMAL------SRLRDNRGGLD---ELSSREFEVLCLLVAGQSA 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++I  +L +S  T++N    I +K            A+   +
Sbjct: 170 EQIGELLFLSAKTIHNIHYQIKKKLQVSNDIELTKLAIAWGL 211


>gi|119899270|ref|YP_934483.1| LuxR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671683|emb|CAL95596.1| probable transcriptional regulator, LuxR family [Azoarcus sp. BH72]
          Length = 214

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 54/222 (24%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     +     +     +       G +              +D  +      
Sbjct: 8   RILLADDHAVVRMGFRLLIEGAGAVVVGEADSGEAAITAYAEHQPDALVMDVSMPGIGGL 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +                 L                     Y S     + +   +
Sbjct: 68  AALERLRAR--------YPHARVLMLSAHDDTQIPARALQAGATGYLSKRAHPSELLRAI 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R +  +    + L                     LTG+E      ++ G++  
Sbjct: 120 GEVAHGRRYLDPEIAPRLAL---------ARLGGSEHPADALTGKEFNVFLQLARGRSVA 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  L +S +TV  ++  I +K      +     AVR  +V
Sbjct: 171 EVAETLNLSTSTVGTHLYHIKQKLNAGNAAELALIAVRAGLV 212


>gi|77864457|gb|ABB05090.1| LipReg1 [Streptomyces aureofaciens]
          Length = 224

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 61/242 (25%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + +S +   +D +  +            +               
Sbjct: 1   MTAIRLLLVDDDPLVRAGLSLMLGGADDVEIVGEAADGDEVGALVDRT------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +                 +    FH   + +    
Sbjct: 49  ---RPDVVLMDIRMPVVDGLTATERLRGRADAPQ--------VVVLTTFHADEQVLRALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   +  +     ++       + +  A  A           +  
Sbjct: 98  AGAAGFVLKDTPPAEILDAVRRVAAGDPVLSPAVTRRL-MEQAAGAAPDARRTRARARVD 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E    +  G  + +IA  L +S  TV  +++ I+ K     R           
Sbjct: 157 TLNDREREVAVAVGRGMANADIATDLFMSVATVKAHVSRILAKLDLNNRVQIALLVHDAG 216

Query: 245 IV 246
           ++
Sbjct: 217 LL 218


>gi|325276053|ref|ZP_08141866.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324098807|gb|EGB96840.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 209

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  +  +            +                  
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLAKDMQVVGEAGNGEQLLETLR---------------HT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +           +     L   +               
Sbjct: 47  PCEVVLLDISMPGVSGLEAIPRIRALL---DAPAI-----LMLSMHDEAQMAARALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I       +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPALADRMVFEVGLTESRPLH--------TLLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + +V
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKLKVNSLAELVKYAMEHKLV 209


>gi|260842730|ref|YP_003220508.1| putative DNA-binding transcriptional regulator FimZ [Escherichia
           coli O103:H2 str. 12009]
 gi|257757877|dbj|BAI29374.1| predicted DNA-binding transcriptional regulator FimZ [Escherichia
           coli O103:H2 str. 12009]
          Length = 210

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADNLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|167763457|ref|ZP_02435584.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
 gi|167698751|gb|EDS15330.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC
           43183]
          Length = 217

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 81/244 (33%), Gaps = 32/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + + I+L  + +     +  +   S  L  +  +    S    ++ L      + F+
Sbjct: 1   MKERDIRILLVDDHDLVLQGLKRIVECS--LPEIKNVCTASSGQEALH-LIASQRFNLFV 57

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L           D  +      D++  +            +            + + I  
Sbjct: 58  L-----------DMELPDISGMDIIVRIREK-----DPRARIIVNTMHEEIWFIKDLIQS 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                +     + D  +I   +  +   G              A +     +  D   G+
Sbjct: 102 A---VDGILFKSIDSTKIAEAIRRVLDGGTYYCP--------YAEHVRAQMRRSDE--GR 148

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             ELT RE++ L  ISEGK + EIA  L +S NTV+ +   +M K   +  +  I  A+ 
Sbjct: 149 REELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKLDARNVADLIMTAIS 208

Query: 243 NNIV 246
             I+
Sbjct: 209 KGII 212


>gi|170727066|ref|YP_001761092.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169812413|gb|ACA86997.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 219

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    +           D   +    +             
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALSGPFADTHWFEADSAEALQTLLEK----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                   + + D ++             L     +Y  L            T+   +  
Sbjct: 50  -------SDVEYDLVLLDLQMPGSHGYSTLIHLRTHYPELPVVVISAHEDNITISRAV-- 100

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +   +  +  +   L  +      + +D   E+  +      +         K
Sbjct: 101 -HYGSAGFIPKSSSMDSLAEALTSVLYGDIWLPQDV--ELQDIEEDATALIA------SK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 203

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 62/207 (29%), Gaps = 8/207 (3%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +   +         T    A    +V         +D ++      +++R +        
Sbjct: 1   MSRDLDQAGFAVVGTAGSVAQALRVVAATRPDLVVVDLMLPDGSGVEVIRGLRGPGAAGG 60

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                    L         + +       + Y   +     +   +        +     
Sbjct: 61  ----FGGAVLIVSASGEQGDVLAAVQAGASGYVVKSARPEELVDAVRRTAAGVPVFS--- 113

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              +  L   + +              LT RE+E L  I++G ++ + A  LG+S  TV 
Sbjct: 114 -AGLAALVLGEMSRAARDVTATPSTPRLTAREIEVLRLIAKGLSARDAAARLGVSHRTVQ 172

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNI 245
           N++ +++ K   + R     +A+R   
Sbjct: 173 NHVHNVLGKLQLRNRVELTRFALREGY 199


>gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 200

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++ L+  V             G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDALCQLLMLEDDVE-----EVHAASDGQEAIALLEKEEVDVAILDIEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  ++        +    +    F          A   + Y      ++ + 
Sbjct: 60  TGLDVLEWIRANQ--------RETKVVIVTTFKRKGYFKRALAAQVDAYVLKERSISDLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                    +  L+ RE E L  +++G 
Sbjct: 112 ATIHTVLVGHKEYSPELVEGVAF-----------------DNNPLSQREQEVLAMVAQGS 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A   + +
Sbjct: 155 TNQEIAESLFLSNGTVRNYMTAILTKLNAGNRTEAVRIAKEKDWL 199


>gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 550

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 23  VSHLPTRSDLLARMIPL----DCTVSWTMRMYALTEYVGASHFLLVRWDLFQ------EQ 72
           +     R  +L  +                M      +    F+ V W          E 
Sbjct: 323 MDRHLMRLSMLVEIGRAMRVVQNEEEIIRIMAEFAAELAYGDFVFVVWSNDGQTAVVHEG 382

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  ++  +  D+ R      +     V          V            G+   +  
Sbjct: 383 AMDIEMAVRYRDDVCRRYGCHGEKAKSEVPALLDVEGKSVMEVPFFVGDGRYGVLAVHIK 442

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              +     + +  L   G +          +++                  +LT RE++
Sbjct: 443 KEREAKEAEVYMTALAAIGAM----------MISGKSHGGNDGTVNIDMLSEQLTAREMD 492

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 493 VLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLN 544


>gi|217973035|ref|YP_002357786.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217498170|gb|ACK46363.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 220

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 74/236 (31%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    T +   A+    D   +    +             
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQSVLD------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            VR   +    LD  +           + L        V+             +      
Sbjct: 49  -VRSVDYDLVLLDLQMPGSHG--YSTLIHLRSHYPDLPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      + +    E+  +     +          K
Sbjct: 100 IHYGSSGFIPKSASMETLKEALSAVLFGDIWLPKG--TEVISIDDDAVDKMA------SK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|85858068|ref|YP_460270.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85721159|gb|ABC76102.1| response regulator with a HTH DNA-binding domain [Syntrophus
           aciditrophicus SB]
          Length = 216

 Score = 98.4 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 28/238 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  +++  +       +S L  +   L  +   D        + +             
Sbjct: 1   MTKKRVMIVDDHPILRKGLSMLINQEPDLTVVAEADTAQRALEMIDS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L++ + L+         +    L   +            
Sbjct: 48  --HKPDMLIVDISLPGIDGIELIKMVKLNN--------RDLPSLVVSMHDESLFAERALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y      + +I + +  +  +   +         +L    ++  K+     G   
Sbjct: 98  AGARGYIMKQEALDKILVAIRRVLAREIFVSDKIAT--CMLEKLVSSDDKAVSSPIG--- 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L+ RE+     I +G  + +IA  L +S  T+ +Y A I  K      +  + YA++
Sbjct: 153 LLSNRELTVFRMIGQGYKTSQIAEKLHLSIKTIESYRAHIKEKLKLSDGTELLKYAIQ 210


>gi|324999047|ref|ZP_08120159.1| transcriptional regulatory protein DegU [Pseudonocardia sp. P1]
          Length = 220

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 69/241 (28%), Gaps = 26/241 (10%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +   + +V+  + E     +  +   +    R+  +      T  M A            
Sbjct: 3   QATPLRLVVVDDHEMVVQGLKAML--APFRGRVRVVGTAHDVTAAMDAALSL-------- 52

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                      D  ++ D   DL R +      +          +   V+          
Sbjct: 53  ----APDIVLCDVRMAGDSGLDLCRRLHDRLPGQ--------KVVLLSVYDDEQYLFQAL 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y         +   L L      ++           AA             G  
Sbjct: 101 RAGAAGYLLKRIGGEELVRQLELAATGVTVVDATMAGRAAASAARLERNEFWPGARLG-- 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  +  G ++  +A  L I   TV +++ S++RK     R+ A+A A+R 
Sbjct: 159 --LTHRESEVLALLVAGHSNRSVAAELVIGEETVKSHVRSVLRKLDVPDRTAAVAAALRE 216

Query: 244 N 244
            
Sbjct: 217 G 217


>gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 256

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 77/231 (33%), Gaps = 21/231 (9%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPFDLVR---- 88
           +             R   +   + AS F L       +  +L     SD+P   V     
Sbjct: 28  SETHHAVTIPDAVRRCRWIAVDMNASAFGLFFVSPSPERARLVPCFDSDYPGIAVATKFI 87

Query: 89  ------------CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
                        ++   +    + +    ELF     T       P    +        
Sbjct: 88  SGANGEEIVRHTRISTEPRWWTDDGVPATAELFGDFAWTERMAALVP--GTSGIAFPVHA 145

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECLT 195
                  ++ L  +   + +D L+E+                   G+   ++ RE+ECL 
Sbjct: 146 DRGQCGLVVFLGSEMT-LQQDALYEVHARCFSLFAAVARIRPGDAGRMRAISKRELECLK 204

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 205 LTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|302340328|ref|YP_003805534.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301637513|gb|ADK82940.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 217

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 67/217 (30%), Gaps = 13/217 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY-------VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +  ++  D  V +   + ++ E+        G ++       + ++   D  +       
Sbjct: 1   MIELVIADDQVLFVDTLKSVIEHRAKDIHITGVAYDGKTALRIIEQTNPDVALLDVKMPY 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +       +       ++    +    F                Y         +   + 
Sbjct: 61  INGLELSQKLYMIRPGVK---VIILTTFPDDEFVEQALQHGAAGYLLKNMLSDDLINSIR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKT 202
           ++     +I       +           K+      +     +L+ RE E    + +G +
Sbjct: 118 MVHSGNILISEKVGSVLQQRDHNDCTREKNESFTKTRQELLRQLSRREREVYGLMLQGYS 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +DEIA +L I+  TV N+I SI  K+    RS  I  
Sbjct: 178 NDEIAEMLFIATQTVKNHIRSIYSKSGFHNRSDIIHL 214


>gi|146306594|ref|YP_001187059.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145574795|gb|ABP84327.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 214

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +     + V  +    D    +   +           L                
Sbjct: 4   RVLLADDHAVIRAGVRAMIQDIDDYTIVGEAEDGKETVELAREL---------------E 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + ++ +     D           L   +       +       +
Sbjct: 49  PDIILLDISMKRVSGLEALQVLNRHSPD--------CKVLILSMHTGPEVVLEALQKGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +R+ L  +    R +    +  +   A  + N    +         LT 
Sbjct: 101 GYLLKDAAAFELRLALEAVRRGDRYLSSAIVQPVIEQAVSKVNAHAEHG--------LTQ 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I+ G+++  IA  LG+S  TV  + A IM++         + YAVR  I+
Sbjct: 153 RQLEILRLITRGESTRSIANGLGLSVKTVEAHRAQIMKRLQIHDVPSLVLYAVREGII 210


>gi|134292526|ref|YP_001116262.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135683|gb|ABO56797.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 214

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 56/227 (24%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +             A           L          +D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLALMDV 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++      L                     L   +   L           + Y      
Sbjct: 64  GMNGMNGITLAGVFHER--------FPAIRVLMLSMHDNLEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIHASATASPLDRLTPRERDILDA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|330959238|gb|EGH59498.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 215

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L       AR++  +       R+    ++             
Sbjct: 5   ILIADDHPLFRSALHQALTIGLGPAARLVEAESITQLESRLAEKADW------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASIVVRSREFGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +                       ++             LT 
Sbjct: 103 GFIPKSSSLEVIQQAVRTVLDGDVWWPPQV--------NEVISVSDEAKAASAGLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 155 QQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 205


>gi|86140638|ref|ZP_01059197.1| DNA-binding response regulator, LuxR family protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85832580|gb|EAQ51029.1| DNA-binding response regulator, LuxR family protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 212

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 20/220 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
              H P   D L  ++  D        +    +               +EQ  D ++   
Sbjct: 6   VADHHPIIVDGLTHILK-DTPHEIIDVVSDGKD----------LIPSLEEQVPDLVIMEI 54

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L    A+ E  K +  ++       P        ++        Y     +   + 
Sbjct: 55  DMPNLQGLSAIKELRKLFPGIKIMVFSTHP---EGMYALSAIKAGAMGYIGKIAETQTVH 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++ +   G  +         L+           +    +  +L+ RE E L  +S GK
Sbjct: 112 KAVVQVARGGIYL------NNNLVEMLSNTDSAQNNSLAYRYKKLSTRETEVLNMLSSGK 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            + +IA  L I+  TV+ Y   +++K    + +  I  A 
Sbjct: 166 RNKDIAESLDINEKTVSTYKTRLLKKLDAGSLAELIQQAR 205


>gi|298290097|ref|YP_003692036.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926608|gb|ADH87417.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 222

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 73/232 (31%), Gaps = 30/232 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V+  +       +    +R    A +            + AL E  G    +L+   +
Sbjct: 8   RLVIADDHPLFRGALREAVSRQFPQAELFEAGGFED----LQALLEREGDLDLILLDLTM 63

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
              +    ++              ++      V+    E    +               +
Sbjct: 64  PGVRGFSGLM-----------YLRAQYPGIPVVVVSANEEAGVI-------RNCMEFGAS 105

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T  V  +R  +  +         +                K       +   LT 
Sbjct: 106 GFIPKTSAVETMREAVAAVLEGQTWTPPEV--------DLSGTSDKETQALVARLATLTP 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++V  L  +SEG  + +IA  LG+S  TV  ++++I++K   ++R+ A+  A
Sbjct: 158 QQVRVLMMLSEGLLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVIAA 209


>gi|291451544|ref|ZP_06590934.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354493|gb|EFE81395.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 238

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 66/250 (26%), Gaps = 45/250 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +++   + +S L +    +  +                    G       R  
Sbjct: 1   MRVVVADDNQVVRAGLSALLSARPGIRVVAEAGD---------------GHRALAATRHH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +           ++    L                   
Sbjct: 46  RPDVVLLDVRMPGVDGLAALPHL-----------VRLAPVLMLTYSRERDTVQRALGLGA 94

Query: 128 NRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDF 184
             Y     F   ++   +         +       +   L+A    +     +     + 
Sbjct: 95  VGYLVHGEFTADQLARAVRDAHEGHAHLTPSARNALLAHLVAPAAPHRPPVSNPPTSGET 154

Query: 185 E----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            L+ REVE +  I+ G ++ +IA    IS  TV N+I  I  K 
Sbjct: 155 PSRLQSPVGESNRAAHGLSSREVEVMELIASGMSNQQIAATCFISEKTVKNHINRIFAKL 214

Query: 229 ATKTRSGAIA 238
               RS AIA
Sbjct: 215 HAPNRSAAIA 224


>gi|271966072|ref|YP_003340268.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509247|gb|ACZ87525.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 212

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 61/229 (26%), Gaps = 18/229 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     L  ++  +  +             G     +VR        +D  
Sbjct: 2   IRVVIVDDDPMVRTGLRLILGGEPDLDLVGDAG-----DGRQAMTVVRDMRPDVVLMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 L    F      +       + +       
Sbjct: 57  MPVQDGLTTTELLLDRPSPP--------RILVLTTFDADDMVLRALRLGAHGFLLKDTPP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A++   +  +     ++      ++   A       +       +  +LT RE E    +
Sbjct: 109 AKMIEAVRAVARGEPVLSPSVAHQVIAAAT-----SRYKPQAVKELDQLTEREREVAIEV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  TV   I  I  K  T +R           ++
Sbjct: 164 AKGSSNTEIATNLSVSVATVKANITRIFAKLGTGSRVDVANRVRDAGLL 212


>gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281541|gb|ABR89951.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 210

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   ++    M    E   A     LVR   +    LD  +      
Sbjct: 4   ILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKSGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++++ +   +       L        P        +       + Y         +   +
Sbjct: 64  EVLKQIKREK-----PELPVLILSMHPESR---YAVQILRSGASGYVQKEALAEELVNAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    + I       +                       L+ RE E    + +G    
Sbjct: 116 QTILRGHKYISHTVAELLTT--------ELDTSTEKPLHETLSKREYEIFYKLCQGHGVT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S  TV+ Y A +++K   +  +G I YA++ N++
Sbjct: 168 KIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNLI 209


>gi|159044443|ref|YP_001533237.1| putative response regulator receiver protein [Dinoroseobacter
           shibae DFL 12]
 gi|157912203|gb|ABV93636.1| putative response regulator receiver protein [Dinoroseobacter
           shibae DFL 12]
          Length = 204

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 59/230 (25%), Gaps = 29/230 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWT--MRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            R           + LA  +  +          + A  E +G           +    LD
Sbjct: 1   MRVLLADDHDLVLETLASFLKAEGGFEVETCGSLEAACEKIGNDI-------AYDLVLLD 53

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + ++    +   +                 +              +   T 
Sbjct: 54  YTMPGMNGLEGLKKAIAASFGR--------PVAMMSGTASKAIAQEAIDAGAIGFLPKTM 105

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +      I  D L  +                      +L+ RE + L 
Sbjct: 106 AAKSMVNAVRFMAMGETYIPLDFLNAV------------EETPDIPLARQLSEREHQVLG 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  G ++ EIA  L +   T+  ++ ++ RK   K R+ A        +
Sbjct: 154 GLCRGLSNKEIARELDLQEVTIKLHVKTLCRKIDAKNRTHAAMIGKEAGL 203


>gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 274

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 29/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q + +V+          +  +      ++ +  +  T      + +L            
Sbjct: 47  LQTIKVVIANRHRLYRECIKRMLELEMDISVVGEICRTEEMRDVISSL------------ 94

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +        +R ++                     +H   +N+    
Sbjct: 95  ---RPDVIVYDDELLDKDSIGPIRELSKEFTPFRC----VLLTSKENNYHDRLQNLR--K 145

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                    +     +   +  +                             +    + +
Sbjct: 146 SGIYGCILKSSKAEDLLSAIRNVAKADPYNDPRL--------ETYKKTVSLIEEDTAQLY 197

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L W+S+G ++  IA I+ +S  TV N+++ I++K     R+ A  +A +  
Sbjct: 198 HLTPREKEVLYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDRTQAAVFAWKAG 257

Query: 245 I 245
           +
Sbjct: 258 L 258


>gi|49481089|ref|YP_035969.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228914414|ref|ZP_04078027.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|49332645|gb|AAT63291.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228845231|gb|EEM90269.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 212

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKCNLMESKEDECKIDSSL-----FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|300022440|ref|YP_003755051.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524261|gb|ADJ22730.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 218

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 23/217 (10%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-----QEQKLDSIVSSDWPFDL 86
           L + +  +D        +  +    G   +     + F      EQ    +V       +
Sbjct: 3   LASAIAIIDDDEPVRDSLSLMLSNRGYGVYAFSSAEKFLSALQGEQLPSCVVCDIRMPGM 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                  E  K + ++             +   ++      + +    F   R+   +  
Sbjct: 63  TGLELQKELAKKWPMVPLVL---ITGHGDVAMAVSALKAGAHDFIEKPFSPDRLIESISS 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +               A  Q N  +       +  EL+ R+ + +    +G ++ EI
Sbjct: 120 AIGE---------------AESQRNQDQEKMRLAARINELSDRQRQVMDLAVKGHSNKEI 164

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           A+ L IS  TV  Y A +M +T  +  +  +  AVR 
Sbjct: 165 ALALKISPRTVETYRAWVMERTGARNIADLVRIAVRL 201


>gi|167618566|ref|ZP_02387197.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 279

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +  G     +      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQGFDLIAV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCQACAPTPVAALTDDASPEHAQALFNAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
               +     I   L ++   G  +    L     +   +     +      +       
Sbjct: 98  VIPRSTRPHLIVRALEMVLLGGHYVPPSALNLTEPITRARDGRVDAIVSQLPRRKRSPRS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|330817027|ref|YP_004360732.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia gladioli BSR3]
 gi|327369420|gb|AEA60776.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia gladioli BSR3]
          Length = 215

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +          E    A+   LVR    Q   LD  +     
Sbjct: 3   EVLLADDHAMVRDGLRYILQHEAGFEVAGEAWDHATTLALVRGTDAQVLVLDLSMPGGSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+R +                 L   +       +       + Y +       +   
Sbjct: 63  TELLRKIKEER--------PALRVLVLTMHAEQQYAVQVFRAGASGYMTKESAGTELISA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   G  +       +       A               L+ RE++ L  I+ G T 
Sbjct: 115 LARIAAGGVYVSLTMAERLAQSLNEGAESL--------PHERLSSRELQVLRLIAAGDTV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  LG+S  TV+ Y A I+ K      +  + YA ++ +V
Sbjct: 167 GDIAHQLGLSVKTVSTYKARILEKMKLPHEAALVRYASQHRLV 209


>gi|319787310|ref|YP_004146785.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465822|gb|ADV27554.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 217

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 60/239 (25%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  +      +  +   +       ++  +               
Sbjct: 3   IRVYLIDDHALVRTGLRMILAAETDIEIVGESEDGEDALRQLRRM-------------PV 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +          ++    +   P                
Sbjct: 50  PPDVVLCDLHLPGISGLEVTERIVAEGLPSRVLIVSVLEDGPLP--------KRLLDVGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L            +        L+
Sbjct: 102 SGYIGKAGDARELLRAVRDVANGKRYLGSSVAQNMAL---------AGVERGGSPFDVLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    + +G   + IA  L +S  TVN + + +  K   +        A R  ++
Sbjct: 153 PRELEVAMLLVQGLRQEMIARRLKLSAKTVNTHKSRLFEKIGVQDSIALARLAARYGLM 211


>gi|253688587|ref|YP_003017777.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755165|gb|ACT13241.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 213

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 67/240 (27%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +    + L+ +           ++ ++T             
Sbjct: 4   PIRLMIADDHVIMREGLKQIFALDESLSVVAEAGNGAQVLAQLRSVT------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       L+  +             R   L   ++             
Sbjct: 51  --PDLLLLDMSMPGISGEALISRVVAQ--------YPRLPILVLSMYSEAQIAQHALKSG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y +   D   +   +  +    R I      ++        + +            L
Sbjct: 101 ARGYITKDKDPEALLSAIRRVAQGARYIDHTIAEQL------VFSNYTEGGRAEHD--VL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE + +   ++G   + IA  L IS  TV+ + A +M K    T    + Y V   ++
Sbjct: 153 TAREHQIMIMFAQGMGINAIANELAISNKTVSTHKARLMEKMQFSTNVEIVKYVVSKKLI 212


>gi|172064507|ref|YP_001812158.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171997024|gb|ACB67942.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 214

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 56/230 (24%), Gaps = 25/230 (10%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
                R   V   P   D L   +             A           L          
Sbjct: 7   DRPAARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLAL 60

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  ++      L                     L   +   +           + Y   
Sbjct: 61  MDVGMNGMNGITLAGVFHER--------FPGIRVLMLSMHDNIEYVTQAVRAGASGYLLK 112

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               + I   +  +                      A               LT RE + 
Sbjct: 113 DSPASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASAAASPLDRLTPRERDI 161

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 162 LDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|323938486|gb|EGB34737.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|323963302|gb|EGB58866.1| luxR family protein regulatory protein [Escherichia coli H489]
          Length = 194

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 17/187 (9%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
               +R        +D  +     F  ++ +   +             LF          
Sbjct: 25  TIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYA 76

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                   N + S   D   I   + ++         + L  I                +
Sbjct: 77  GRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTN 127

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I Y
Sbjct: 128 SSTITVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDY 187

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 188 AKLYELI 194


>gi|297516794|ref|ZP_06935180.1| transcriptional regulator FimZ [Escherichia coli OP50]
          Length = 192

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 17/187 (9%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
               +R        +D  +     F  ++ +   +             LF          
Sbjct: 23  TIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYA 74

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                   N + S   D   I   + ++         + L  I                +
Sbjct: 75  GRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTN 125

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I Y
Sbjct: 126 SSTITVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDY 185

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 186 AKLYELI 192


>gi|182433997|ref|YP_001821716.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462513|dbj|BAG17033.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 25/232 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
             + R             +  ++  + T+             G +   L          +
Sbjct: 8   RRKLRILVADDHTVMRAGVVALLADEPTIDIVGEAED-----GRAAVALTERLEPDVVLM 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +           +             R   L    + T  E           Y    
Sbjct: 63  DLRMPVLDGTSATARIVAGPS--------RTRVLILTTYETDAEIERAVEAGAIGYLLKD 114

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +        ++       +               +       LT REV+ L
Sbjct: 115 ATRDQLVEAVHSAARGETVLAPRVAARLV------------ARMRRPAPVTLTPREVDVL 162

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +++G ++ EI   L I+  TV  ++  +  K     R+ A+  A+  N++
Sbjct: 163 GAVADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214


>gi|315647681|ref|ZP_07900782.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315276327|gb|EFU39670.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 201

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +      + L    D +  +  +         +                  
Sbjct: 2   IRIIIAEDQKMLRGAFASLLRFEDDIEVVAEVPDGEQAWEAIR---------------HH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L   +  +              +    F              
Sbjct: 47  QPDICLLDIEMPGINGLELAENIRHAGLP--------CKIMIVTTFARPGYLQKAMNAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +    R++  D    + +                  +  L+
Sbjct: 99  EGYLLKDEPIDFLIEAIRRIMKGERVVSTDLAAALFMKG----------------ENPLS 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L    EG T+ EI+  L ++  TV NY++S ++K    +R  A A A     +
Sbjct: 143 EREIEMLRLTKEGMTTGEISKALFLTTGTVRNYLSSAIQKLEADSRQQAAAIAEDKGWL 201


>gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 216

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 26/224 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD----------LFQEQKLDSIVSSDW 82
             R+   D        + AL + +G    L                      D  +    
Sbjct: 9   AIRVALADDQALVRAGLRALLQGLGVEVVLEAEDGQALLDALLTQPVDVVLSDIRMPGVD 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             + +R +                 L    F      +         +       A +R 
Sbjct: 69  GIEALRQLRARG--------DATPLLLLTTFDESDLLLRASEAGAQGFLLKDAAPADLRE 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     +++         ++         +            REV  L  ++ G +
Sbjct: 121 AIERVAAGETLLMP--------VSTEPVRARYRFHDEAPPTDTFGEREVAILRLLAGGYS 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L ++  TV NY+++I+ K  T+ R+ A+  A+   I+
Sbjct: 173 NKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 216


>gi|322390963|ref|ZP_08064469.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321142338|gb|EFX37810.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 199

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 65/229 (28%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L +++ L         + A     G     L+         LD  
Sbjct: 1   MRLLVAEDQSMLRDALCQLLLL--QEDVEDVLQA---GDGQEAIRLLETHPVDIAILDIE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++      +         +   +    F              + Y      +
Sbjct: 56  MPIKTGLEVLEWAKSQQ--------PQLKVVIVTTFKRPGYFERALKAGVDAYVLKERRI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +    +    + +  I                       L+ +E   L  +
Sbjct: 108 TDLMATLHTVLAGQKEYSPELMEGILT-----------------HPNPLSPQEKAVLKEV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  T+ NY+++I+ K   + R+ A   A     +
Sbjct: 151 AKGASNQEIADRLFLSNGTIRNYMSTILTKLDAENRTEAAKIAHEKGWL 199


>gi|163786051|ref|ZP_02180499.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877911|gb|EDP71967.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 206

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 25/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +      +  D +  ++     +             G     LVR         D  
Sbjct: 2   IRLAIAEDHQSLIDGIKLLLQYKEGIEIVGTANN-----GEELLDLVRLKQPNVIITDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         + +           L     +   +F              + Y      +
Sbjct: 57  MPKMDGIRATQLIKKE--------LPHIKIIGFTMFDQSDAIQQMLDAGASGYLLKNSPL 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +         +   E               + +      LT R+VE L  I
Sbjct: 109 EEVLKAIRAVDNGNTYFDSNIRVE------------AKDNTNKKAKGILTKRQVEILGLI 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S+GKTS EIA  L I  +TV+ +  +++R    + +   + YA+    
Sbjct: 157 SQGKTSREIADELFIGVHTVDTHRKNMIRILGLQGKGELMRYALEKKY 204


>gi|13473840|ref|NP_105408.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024591|dbj|BAB51194.1| two-component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 220

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 62/235 (26%), Gaps = 28/235 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +       V+   +       +                          +    
Sbjct: 5   IRIAIVDDHPLFREGVTRSLSEIGGFEIVGEGATAQDAER---------------IASTM 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +A         V      +   V  T  +  T      
Sbjct: 50  QPDILLLDISMPGGGLSAVASILA---------VHPAQRIVMLTVSETNADVTTALNAGV 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +      +       +           +S +    +  +LT
Sbjct: 101 QGYILKGVGSRALAEILRNVAAGESYLSPTLSARL----LSDLQSPQSANGAADRLRQLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            R+ E L  ++EG ++ E+A+ L +   TV +++  ++ K   + R+ A      
Sbjct: 157 ERQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTGVLSKLNVRNRTEAALMMRE 211


>gi|163848683|ref|YP_001636727.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|163669972|gb|ABY36338.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
          Length = 890

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 74/252 (29%), Gaps = 16/252 (6%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWT-MRMYALTEYVGASHFLLVRWDLF 69
           +LN  +         L T +        +D   +     M+ L ++     +        
Sbjct: 638 LLNGNEAAARQAADDLVTLAYRGGVTNAIDWAYAVRAELMFRLKDWAAFDSYARTYQPPQ 697

Query: 70  QEQKLDSIVSSDWPFDLVRCMAL--SEKDKYYNVLQRPTELF-------CPVFHTLPENI 120
           Q       + +      +         +      ++   E           +   L E  
Sbjct: 698 QPLFFPYRLQTLLQVRYLTRQKAWNEGRRLVAEQVRLAREAGYVEYEMELHIVSALLEQK 757

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKS 175
                +         ++ +    + +   +G  +        RL     +A   A   K 
Sbjct: 758 AGNPSVAMNMLGRALEIGKANGYVRIFLEEGEEMRHLLTQIHRLRRDDFVAELLAAFGKP 817

Query: 176 YDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             V      E LT RE+E L  I+EG ++ EIA  L +S  TV  ++  I  K     R 
Sbjct: 818 AQVVQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRV 877

Query: 235 GAIAYAVRNNIV 246
            A   A    ++
Sbjct: 878 KAAGMARELGLL 889


>gi|323965034|gb|EGB60495.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323975971|gb|EGB71064.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|327254883|gb|EGE66499.1| response regulator [Escherichia coli STEC_7v]
          Length = 210

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNNSTAT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  T++ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTISAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|197122484|ref|YP_002134435.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196172333|gb|ACG73306.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. K]
          Length = 210

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  +       A +           R+ A                
Sbjct: 2   LRILLADDHAMFRSGLRRILEAEFPGASVGEAATIAEVQERLGAQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  ++     + +  +             R   +   ++      I       
Sbjct: 47  PWDVLLLDISMAGQNSLNALPPLKERH--------PRLPVVVLSMYGDRQFVIQALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +       LA   A+             +L+
Sbjct: 99  SAYLTKERAPEELIRAIRSVLAGRRYVGDE-------LAEQLADHLAGGGTG-SPHEQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    ++  ++  EIA  L +S  TV+ Y + I+ K A ++ +  + YAVR+ +V
Sbjct: 151 PRELEIFLQLAAARSVSEIAGRLQLSVKTVSTYRSRILEKMALRSNAELMQYAVRHGLV 209


>gi|77404771|ref|YP_345344.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides 2.4.1]
 gi|77390421|gb|ABA81603.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 220

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 80/238 (33%), Gaps = 35/238 (14%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q V++++  + E     +S +  R    +    ++ T S    +  + E  G    LL  
Sbjct: 14  QNVSLLVAGDHELLRDAISEILRREGGFS----VEVTGSREGVLKQIEERGGFDVILL-- 67

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      D +R +A S  +    +L                 ++    
Sbjct: 68  ---------DLQMPGMSGLDSLREVATSNANGAVAILAGELTRDV--------VMSAFKA 110

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T  +  + I L L+      +        G                 G  F+
Sbjct: 111 GARGYIPKTLPLRALPIALRLIASGESYVPAWLTNGGGT------------TQADGPSFD 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L   E++ L  +S+G+T+ +IA  L ++   +   + +I  K   K R+ A+  A ++
Sbjct: 159 LLPEELQILEEVSDGRTNKQIAFTLNVTEGAIKMKMRAICMKLGAKNRTHAVVIARQH 216


>gi|86140863|ref|ZP_01059422.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832805|gb|EAQ51254.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 208

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 33/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + +     ++ L      +  +      +     +                  
Sbjct: 2   IRIAIGEDHQSLIDGIALLIQDIAHIQLVCSATNGLELVEAVRK---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +           +             +   +   +F              
Sbjct: 47  QPDVIITDIRMPKMDGIQATEIIKKE--------FPKIAVIAFTMFDQQDAVQQMLDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  ++  +  +                         F+       K   LT
Sbjct: 99  SGYILKNSSLQTLKNAIETVAEGTPFFDSQID----------LRAFEENHSATSKSGLLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            R++E L  I++GKTS EIA  L I  +TV+ +  ++MR    K +   + YA+    
Sbjct: 149 KRQLEILRLIAQGKTSREIADELFIGVHTVDTHRKNMMRILELKGKGELLRYALDRKY 206


>gi|313897472|ref|ZP_07831015.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312957842|gb|EFR39467.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 210

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 16/219 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +    +  A     G     L R        +D  +      
Sbjct: 2   RILIVDDDKLVCSSLKTILEAQGQTIAGIGCSGREALQLYRETNPDVLLMDIRMEGMNGV 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D    +  S              LF   F      I         Y     +   I   L
Sbjct: 62  DASEAILHS--------FPDARILFLTTFSDDDYIIRALKLGVKGYILK-QNFDSIIPAL 112

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    +   + + ++        ++ K +       ++L  RE+  +  +++G  + 
Sbjct: 113 EAVYMGQNVFNTEIIAKLP-------DLLKQHTKETLCSYDLNERELHFIQLVAKGLNNK 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E+A  L +S  TV NY++S++ K   + R+    +  +N
Sbjct: 166 ELAQTLFLSEGTVRNYLSSLLEKLQLRDRTQLAIFYYQN 204


>gi|301053374|ref|YP_003791585.1| LuxR family response regulator [Bacillus anthracis CI]
 gi|300375543|gb|ADK04447.1| response regulator, LuxR family [Bacillus cereus biovar anthracis
           str. CI]
          Length = 212

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 27/216 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I        N+ +S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------CNLMESKEDECKIDTSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|117620400|ref|YP_858390.1| csgAB operon transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561807|gb|ABK38755.1| probable csgAB operon transcriptional regulatory protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 219

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 84/234 (35%), Gaps = 32/234 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  ++ Q TSF S+L  +  L   +            + AL +             L 
Sbjct: 15  VLVTEDNAQATSFQSYLAEQLALPILL---------VSALEALPQA---DELEPHPLFLV 62

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               L S   + WP ++      +                 P        +  P    + 
Sbjct: 63  DLDYLKSSQQTGWPREISSRFGEANTVLLNA----------PTSTDRELLLMWPH--TSG 110

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TG 188
                  + R+ +G+  +      I R  L ++        N ++    H  ++  L T 
Sbjct: 111 LFFCQDPLDRLVLGIRKVLEGEYWIPRHLLCDL-------VNYYRKGGEHHLRNQTLLTV 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE E + ++  G ++ EIA  L +S +T+ +++ ++ +K   K R  A+++A  
Sbjct: 164 REQEIIRYLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVKNRLQAVSWAKE 217


>gi|124268227|ref|YP_001022231.1| LuxR family DNA binding response regulator [Methylibium
           petroleiphilum PM1]
 gi|124261002|gb|ABM95996.1| DNA binding response regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 209

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 63/239 (26%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +          L   +D +  +   +                G    L V   
Sbjct: 2   IRVMLVDDHALVRMGFRMLLANAD-IEVVAEAET---------------GEEACLAVPKA 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + VR +   +         +   L                   
Sbjct: 46  RPDVVVMDLSMPGMGGLEAVRRLLAQD--------PKLKLLVLSAHEDTAHPQRVLRAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    R +       + +            D        L+
Sbjct: 98  LGYLAKRSAPEALIAAVTAVARGERYVDAQTAQRLAV---------AQIDGETSPADMLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      ++ G T  +IA  L +S +TV  ++  I +K     +S     A+R  ++
Sbjct: 149 EREFSVFIQLARGMTVAQIAETLKLSPSTVGTHLYHIKQKLNASNQSEITLVALRWGLI 207


>gi|327480883|gb|AEA84193.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 219

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +        + L         +   +       ++                  
Sbjct: 1   MKILLVDDHAVVRQGYASLLKALLPEVSVSEAESGEQALQQVQESI-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +          V          +   L           
Sbjct: 47  -PNLVVLDLGLPGISGLETCRRLRQRLPLLPVLVF--------SMHDELALVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      I          LA   A    S     G+  ++T
Sbjct: 98  SGYLTKRCAPDVLVEAVRKVLAGQTFIE-------QPLATDLACQRPSRSPVKGRLADMT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    ++ G  + EIA  L IS  TV+N++A +  K    +++  +  A+   ++
Sbjct: 151 PREMEIFIMLARGIGNREIAERLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209


>gi|254467179|ref|ZP_05080590.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
 gi|206688087|gb|EDZ48569.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
          Length = 231

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 21/222 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +S      AL   +     ++          LD  +   
Sbjct: 18  LVDDHPLFCDALAMTLQAVTAISSMHTAPALQAALD----MIAGGIRIDLVVLDLNLPDV 73

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +          +L                  +      N +          +
Sbjct: 74  NGLDGLLRLRK---VTDCPIL------VVSSMADNRIVSSVIHAGANGFVPKHSQRDVFQ 124

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +      +                +   S D    +  +LT ++   L  I EGK
Sbjct: 125 KAVEAINQGKVFLPDG--------FVLLDDNVGSSDDVLQRLSQLTNQQARILQLICEGK 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            + +IA  L I+  TV  +I +IMRK   ++R+ A+  A + 
Sbjct: 177 LNKQIAYDLSIAETTVKAHITAIMRKLGVQSRTQAVLAAKQA 218


>gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
 gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01]
          Length = 217

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D  ++  GL  +      + RD L  +        +     D     + ELT 
Sbjct: 103 GLFYFEDDFDKVIRGLKGILSGENWLSRDILNRLVGYLVNLNHTVTELDTKL--EIELTR 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  AIA+A RN
Sbjct: 161 REMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKRN 215


>gi|134095692|ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133739595|emb|CAL62646.1| Response regulator receiver, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 210

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 68/241 (28%), Gaps = 35/241 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +     + V +   +   +               + A                
Sbjct: 2   IKILVVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRA---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q  D ++      D      L +  +    L        P        +       
Sbjct: 46  ----QDWDIVLLDINMPDKSGVEVLKQIKREKPELPVLILSMHPESR---YAVQILRSGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FE 185
           + Y         +   +  +    + I       +              D +  K     
Sbjct: 99  SGYVQKEALAEELVTAIQTILRGHKYISHTVAELLT----------AEVDPNADKPLHET 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E    + +G    +IA  L +S  TV+ Y A +++K   +  +G I YA++ N+
Sbjct: 149 LSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|262370891|ref|ZP_06064215.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
 gi|262314253|gb|EEY95296.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
          Length = 216

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 61/230 (26%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+                  
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNEFYERLEK--------------GP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +  +                 +               A   
Sbjct: 47  EPDLVLLDLNLPGASGFSALVHVRAQ--------YPSLPIIVVSAHEETSIIQRSIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    +                   +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIREVLDGEIWLPPNLPANMNF-----DPRAADETALAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|326775711|ref|ZP_08234976.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656044|gb|EGE40890.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 246

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 63/241 (26%), Gaps = 25/241 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + ++ +      +  +            +  L               
Sbjct: 18  VRLLIVDDDPLVRAGLTLMLGGDASIDIVREGTDGDEVEGLVARL--------------- 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 +    FH   + +       
Sbjct: 63  RPDVVLMDIRMPVMDGLTATERLRRRPGAPE--------VIVLTTFHADEQVLRAIRAGA 114

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
             +       A I   +  +     ++      ++   AA   +  ++      +     
Sbjct: 115 AGFVLKDTPPALIVDSVRRVAAGDPVLSPAVTRQLMARAAGAGHDDRAGRADRARRRLGG 174

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE +    +  G ++ EIA  L +S  TV  +++ I+ K     R           +
Sbjct: 175 LAERERDVAVAVGRGASNAEIAGSLYLSVATVKAHVSRILAKLELNNRVQIALLVHDAGL 234

Query: 246 V 246
           +
Sbjct: 235 L 235


>gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 215

 Score = 98.4 bits (244), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 68/236 (28%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  +       V+ L      +  +           R+ AL               
Sbjct: 2   VRVFLVDDHAIVRRGVADLIDAEADMEVVGEAADAAQALARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +   +      +L          F      +       
Sbjct: 47  DPDVAVLDVRLPDGNGIELCRELLSRDGKLRCLIL--------TSFTDEQAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +       A +    +   G    LT
Sbjct: 99  SGYVVKDIGTTDLVDAVRAIGAGKSLLDNRAAAAL------MAKLRAEAEADTGPLAALT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A + 
Sbjct: 153 EQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAAVLAAKL 208


>gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 109

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 148 FPKGRIILRDRLWEIGL-------LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +G  +    +  + L       L+    + F    +       LT RE E L W +EG
Sbjct: 1   GRRGDPLTPAEINMLTLQTNWLANLSHSLMSRFMVPKLSPEARVALTAREREVLCWTAEG 60

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EI  IL IS  TVN ++ +I+ K     +  A+  A+   ++
Sbjct: 61  KTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 106


>gi|325105483|ref|YP_004275137.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
 gi|324974331|gb|ADY53315.1| two component transcriptional regulator, LuxR family [Pedobacter
           saltans DSM 12145]
          Length = 219

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +        Y S T    +I   +  L   G  +      ++       A+  +   +  
Sbjct: 104 SALKAGATGYISKTTSSEKIIQAISELHLGGSPMSSQIARKV------VASFQEHKVIKN 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +LT RE E L ++S G    EI   L IS  TV  +I ++ +K    +   AI
Sbjct: 158 DSCKDLTNREFEILEFLSRGYRYKEIGDKLFISVETVRKHINNVYKKLQVNSAIEAI 214


>gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
 gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium
           NaphS2]
          Length = 294

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 39/64 (60%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE+E L  ++EG +++EI+ +L IS +TV ++I  I  K     R+ A  +A R
Sbjct: 231 PTPLTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDRTQAAVWAAR 290

Query: 243 NNIV 246
           +N++
Sbjct: 291 HNLI 294


>gi|270262679|ref|ZP_06190950.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043363|gb|EFA16456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 950

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 76/257 (29%), Gaps = 33/257 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +QV + L R D         L  + + LAR   +D        +             
Sbjct: 713 LLAEQVRVRLQRAD---RPGAEQLQRQLEQLARHARIDAEHPCQRAIAQ----------- 758

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                     +   ++++       + +A    ++        T        +L      
Sbjct: 759 -----HAALSRSRLLLAAGQMPQACKLLAELVTEQENRR-DWLTAARLRALWSLALWKAG 812

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-------------WEIGLLAAYQ 169
                         +A     +      G  +    L              ++ L     
Sbjct: 813 KNAAACTALQPVLPLAEHPHLMRSFLDAGDTLQPLLLHMHEGPAACNEQGAQLRLADKGA 872

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               +         + L+ RE++ L  I+EG+T+ +IA  L IS  TV  ++ +   K  
Sbjct: 873 LTGERLLQSSHDVYWGLSERELQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLN 932

Query: 230 TKTRSGAIAYAVRNNIV 246
             +R+ A++ A+   ++
Sbjct: 933 VNSRTQAMSRALEMKLL 949


>gi|262273889|ref|ZP_06051702.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP
           101886]
 gi|262222304|gb|EEY73616.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP
           101886]
          Length = 224

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D+  +  G+  +      + R +L E+           ++ +     +  LT 
Sbjct: 106 GVFKKEDDLEHLCHGIEKMLSGEYWLPRQKLAEL------IHYYQQNNNNIDYSEICLTN 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + L  +  G ++ EIA  L +S +TV +++ +I +K   K R  A+ +A +NN+
Sbjct: 160 REQQILRKLVTGASNSEIADSLFVSEHTVKSHLYNIFKKINVKNRVQAVFWA-KNNL 215


>gi|163752995|ref|ZP_02160119.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
 gi|161326727|gb|EDP98052.1| two component transcriptional regulator, LuxR family protein
           [Kordia algicida OT-1]
          Length = 209

 Score = 98.4 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 33/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++          +  L   S  +  +     T                  F  +  +
Sbjct: 2   VKVLIADNHPIVRKGIKALFKNSTEIDVVGKAATTSEL---------------FDFISQE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 L+  +        +R +                 +           ++      
Sbjct: 47  HVDVVLLEMDIPEVNGITALRRLKKD--------FADVKVIMFSSHSEDVYAVSTLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + Y S +     I+  ++ +   G  I  +    +          F        + F  L
Sbjct: 99  SGYLSKSVATNVIKDAIVKVANGGIYISNELAQRLA---------FDESTNKPRRFFRRL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + REVE L  ++ GK +  +A  L ++  TV+ Y A +MRK         +  A    ++
Sbjct: 150 STREVEVLKLLASGKRNKHVAEELNLNEKTVSTYKARLMRKLNVDNLVDLLQQAKALELL 209


>gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653]
 gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653]
          Length = 235

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 64/227 (28%), Gaps = 29/227 (12%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQE----QKLDSIVSSDWPFDLVRCMALSEKDKYYNVL 102
             +  + + +G  +          +       D  V    P   V   +         V 
Sbjct: 2   ALLTRIRDEIGCRYITHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAIDPVF 61

Query: 103 QRP----TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-------- 150
           Q            +   L E+      +         +   +    + +  +        
Sbjct: 62  QEDAPYYRNDTSAIARDLKEDADICPAVAE--LLHDAEKHGLGNLFIAVSARNPKGVAGC 119

Query: 151 -----------GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                          L      +  LA                   LT REV+CL W + 
Sbjct: 120 TVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAAN 179

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT  EIA IL I+R TV  Y+ +   K     R+ A+A A+   I+
Sbjct: 180 GKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGII 226


>gi|284993172|ref|YP_003411727.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066418|gb|ADB77356.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 218

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 69/243 (28%), Gaps = 30/243 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      V + L  + E     V+ +     +++ +           R+ A+        
Sbjct: 1   MGSSDTPVRVFLVDDHEVVRRGVAEVLEEDPVISVVGEAGSVAEALARVPAV-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D  V      D        +  +    L+       P         
Sbjct: 53  ------------RPDVTVVDMRLPDGDGAEVCRKLRERVPGLRCLVLTSFP---DEDAVA 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   + Y       + +   +  +   G +  RD            +   +      
Sbjct: 98  AAVAAGASGYVLKQVRGSALVSAVHTVAGGGTLFDRDT-------GVPASAARRRPAERD 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT +E   L  I EG T+ +I   +G++  TV NY + ++ K   + R+ A   A
Sbjct: 151 RRLAVLTEQERTVLRLIGEGLTNRQIGARMGLAEKTVKNYTSHLLAKLGLERRTQAAILA 210

Query: 241 VRN 243
              
Sbjct: 211 TEL 213


>gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806]
 gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 218

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 4/214 (1%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVR---WDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           ++  D      + +    E  G S              +     ++ SD     +   +L
Sbjct: 5   ILIADDDPGIRLAVKDYLELAGYSVVAASNGLEALNLLDTYHPHLLVSDIKMPRLDGYSL 64

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
             K +     +    +F     +  E I       + Y    F++  ++  +  L  +  
Sbjct: 65  VTKVRQQPEFRLLPVIFLTERGSTEERIRGYQVGCDIYLPKPFEMEELKAVIRNLL-ERS 123

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +++       L                  DF+LT RE E L  ++ G ++ EI   L +
Sbjct: 124 QMVQSERQYQKLKPEESPKTRDVLTSSLQDDFKLTNREREVLEHLARGLSNSEIGQKLHL 183

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  T+  Y++S++RKT T  R+  + +++ + ++
Sbjct: 184 SSRTIEKYVSSLLRKTTTNNRAELVRFSLEHRLI 217


>gi|186474868|ref|YP_001856338.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184191327|gb|ACC69292.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 218

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L     +   +                    GA         
Sbjct: 3   LRILIAEDHAVVRQGVRQLLIDRGVADDVAEAQT---------------GAEVLAEASKH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +F    LD  +      ++++ +           +          +      +       
Sbjct: 48  VFDVILLDISLPDMNGVEVLKRLKRKL-----PRIPVLMFSM---YREDQYAVRALKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T D A++   +  +    + +       +          + S+D       +L+
Sbjct: 100 AGYLSKTVDAAQMIAAIQQVAAGRKYVSPAMAEALA--------DYVSFDGEQLPHEKLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IAV L +S  TV+ Y   ++ K   +  +    Y + N +V
Sbjct: 152 DREYQTLCMLASGKRLTDIAVALSLSVKTVSVYRTRLLEKMKLRNNAELTFYVMSNRLV 210


>gi|227111898|ref|ZP_03825554.1| transcriptional regulator NarL [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227329821|ref|ZP_03833845.1| transcriptional regulator NarL [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253688646|ref|YP_003017836.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755224|gb|ACT13300.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 216

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  ED      +   P   + + ++I +D  +             G     L        
Sbjct: 1   MINEDAATLLLIDDHPMLRNGVKQLISMDPELQVAGEA-----SHGEQGVELAEQLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +       + Y 
Sbjct: 56  ILLDLNMPGMNGLETLNRLREKSLSGRIVVF--------SVSNHEDDVVNALKNGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGRE 190
               +   +   L        ++       +           +       +D + LT RE
Sbjct: 108 LKDMEPEDLLAALHQAASGKMVLSETLTPILA-------ASLRESRHSSDRDIQQLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  +++G ++  IA  L I+ +TV  ++  +++K   K+R  A  + ++  ++
Sbjct: 161 RDILKLLAQGLSNKVIARKLTITESTVKVHVKHLLKKMKLKSRVEAAVWVLQEKVI 216


>gi|134280852|ref|ZP_01767562.1| capsula synthesis response regulator transcription regulator
           protein [Burkholderia pseudomallei 305]
 gi|134247874|gb|EBA47958.1| capsula synthesis response regulator transcription regulator
           protein [Burkholderia pseudomallei 305]
          Length = 265

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 15/231 (6%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+++++  + E   S +++   R   +A +     +      +      +  +  +L+ 
Sbjct: 30  EQLSVIMLDDHEVVLSGITYQLKRERDIAVLGTFSRSRQLFDYLAQHGPALAHTRPVLLL 89

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                 Q  D          L+R + +        +L         +             
Sbjct: 90  DYALAPQDTD-------GIALIRRLCVQ--FPVCPILIVSGHHQPSIVRLALM------A 134

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +  +   +  +    R +         L+      M +           
Sbjct: 135 GARGYIGKNCTLEELVEAIRRVAGGERYVHPSLAERDDLVLPAAIEMRRGEAERATLASL 194

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE+E L    +G    +IA  L  S  T++    S  RK         
Sbjct: 195 LSPRELEVLRLTLQGFEVGQIAEKLSRSNKTISTQKRSAYRKLGISGDREL 245


>gi|50954652|ref|YP_061940.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951134|gb|AAT88835.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 203

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 68/214 (31%), Gaps = 17/214 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +AR++  +  +             G +  +  R        +D  +      +L R +A 
Sbjct: 5   VARILSAEPDIEVVAEC-----ADGLAALVCARELAPDVAIVDIRMPRMDGLELTRQLAG 59

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +              +    F                 CS       +   +       +
Sbjct: 60  ASASV------PVKVVVATTFDLDEYVYGALEAGRPDSCSKDAGPILLVEAVRAAVSGDQ 113

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           +I       +        ++    +V      +LT RE E    +  G T+ EI V L I
Sbjct: 114 LISPSVTVRL------LRHLSPRPEVTTAAGPQLTPRERETAALVGRGLTNAEICVELVI 167

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV ++++S+  K   + R    A+A RN ++
Sbjct: 168 ALGTVKSHLSSLQLKLGVRNRVEIAAWAWRNGLL 201


>gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 239

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 14/240 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             TS +       D+ A   P                  G ++                 
Sbjct: 1   MMTSVLPDRGAGPDMFAPRSPAAGAYGILGLCAEELRARGLAYSAAAVTYRDPSSGRHRA 60

Query: 78  VSSD-WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH---------TLPENITPPAGMD 127
           ++S  +   ++  +                    PVF           +  ++  P+G  
Sbjct: 61  LASSGYDARVLEFLLDDFVADRNLFGIIREASGVPVFWQDVPRFEQVEMVTDVLRPSGYA 120

Query: 128 NRYCSLT-FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                   F    +   L + F    ++  DR+ E+   ++   +      V   +   L
Sbjct: 121 EGASVALGFSGREVTGLLHMSFADSGVV--DRVREVVAASSAACSRVVGDQVALDR-VHL 177

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE++ L  ++ G  + EIA  L +SR TV  ++ +I  KT T +R  A   A +  ++
Sbjct: 178 SPREIQVLQLVARGAGNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237


>gi|167638833|ref|ZP_02397108.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
 gi|167513297|gb|EDR88668.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0193]
          Length = 233

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 26  ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 85

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 86  EATKLICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 136

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 137 KGVYNGQTVMQDVVLDKI----KCNLMESKEDECKIDKSL-FTERELSIIALIAKGFSNK 191

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 192 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|117617775|ref|YP_855754.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559182|gb|ABK36130.1| positive regulator AgmR [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 214

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 32/238 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q  IV+  +             R  L   +                 + + +   LL  
Sbjct: 3   SQFTIVIADDHPLF---------RGALYQAVHMAIDDAQLLE-----ADSIDSLAHLLGE 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +     F  +  +    +     ++         +             
Sbjct: 49  HPEVDLLLLDLKMPGANGFSGLAHL--RGQYPDLPIVVVSASEEPTII------QQVLRL 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +  +  +   L  +      +                           K   
Sbjct: 101 GALGFIPKSAPMKELVNALNTVIGGDNWVPA---------GISLHPEPTDGADFASKLAS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT ++ + L  + +G  + +IA  L +S  T+  +I +I RK   K R+ A+  A++ 
Sbjct: 152 LTPQQYKVLVMLRDGSLNKQIAWELNVSEATIKAHITAIFRKLGVKNRTQAV-IALQQ 208


>gi|29833934|ref|NP_828568.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29611059|dbj|BAC75103.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 223

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 14/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +     +  + E   GA    L R        LD  +    
Sbjct: 11  TRVLLADDHALVRRGVRLILDGEPGLSVVAEAGDGAEAVALARTTDVDLAVLDVAMPRMT 70

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                R +           L     L   ++                Y   +     +  
Sbjct: 71  GLQAAREL--------SRRLPELRILILTMYDNEQYFFEALKAGACGYVLKSVADRDLVE 122

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      +      E  L+  Y   + +   +      E        L  ++EG T
Sbjct: 123 ACRAAMRDEPFLYPGA--ETALVRTYLDRVHRGEGLPERTITEREEEI---LKLVAEGHT 177

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EI  +L IS  TV  + A++++K   + R     YA+R  +V
Sbjct: 178 SKEIGELLFISAKTVERHRANLLQKLGLRDRLELTRYAIRAGLV 221


>gi|30261839|ref|NP_844216.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Ames]
 gi|47527080|ref|YP_018429.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49184673|ref|YP_027925.1| LuxR family DNA-binding response regulator [Bacillus anthracis str.
           Sterne]
 gi|65319116|ref|ZP_00392075.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bacillus anthracis str.
           A2012]
 gi|165869394|ref|ZP_02214053.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|170686283|ref|ZP_02877505.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|170707310|ref|ZP_02897765.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|177650481|ref|ZP_02933448.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190566515|ref|ZP_03019433.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815387|ref|YP_002815396.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228933122|ref|ZP_04095982.1| Response regulator [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229600997|ref|YP_002866221.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
 gi|254683338|ref|ZP_05147199.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254734693|ref|ZP_05192405.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254755345|ref|ZP_05207379.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Vollum]
 gi|254759882|ref|ZP_05211906.1| DNA-binding response regulator, LuxR family protein [Bacillus
           anthracis str. Australia 94]
 gi|30256067|gb|AAP25702.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Ames]
 gi|47502228|gb|AAT30904.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178600|gb|AAT53976.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. Sterne]
 gi|164714834|gb|EDR20352.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0488]
 gi|170127809|gb|EDS96681.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0389]
 gi|170669980|gb|EDT20721.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0465]
 gi|172083625|gb|EDT68685.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0174]
 gi|190562650|gb|EDV16617.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003074|gb|ACP12817.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. CDC 684]
 gi|228826536|gb|EEM72310.1| Response regulator [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229265405|gb|ACQ47042.1| DNA-binding response regulator, LuxR family [Bacillus anthracis
           str. A0248]
          Length = 212

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKI----KCNLMESKEDECKIDKSL-FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|319787105|ref|YP_004146580.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465617|gb|ADV27349.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 213

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 18/226 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L+R++     V          + +      L          LD  
Sbjct: 1   MRVLIVDDHTLVRAGLSRLLQTFDGVDVVAEAANADQAID-----LAAIHRPDLVLLDLS 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  +                 +   +                 +       
Sbjct: 56  LPGRTGLEALSGILGQS--------PETRVVMMSMHDDPMHVRDALDRGAAGFVVKDAAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + L         +         ++A       +S          L  R+ + L  I
Sbjct: 108 LELELALRAAASGEVFLSPRISSR--MIAPLIG---RSRQSRPEGVAALPPRQRQILAQI 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +G +S EIA  LGIS  TV  + A +M     +  S  +  AVR+
Sbjct: 163 GQGLSSKEIASGLGISVKTVETHRARMMEALGCRRASELVLLAVRH 208


>gi|283851842|ref|ZP_06369119.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
 gi|283572758|gb|EFC20741.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           sp. FW1012B]
          Length = 221

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 28/246 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           ++  +  +++++  + E       +  +    +  +            +           
Sbjct: 4   LSVAMNMISLIIVDDHEIVREGTRYFLSGIPTVRVVGMAATPGEALQLVARY-------- 55

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  + S         +     +       R   L            
Sbjct: 56  -------YPDVALVDLGLPSL-------EIGRGLIEDIKAHHPRVKILAFTAHEDALAIH 101

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +  A   + Y   T     +   +M +    + +  D        A              
Sbjct: 102 SSLAAGADGYLLKTASTDELATAIMAVATGKKYLSPDVS------ANVVDGFVNPDGGSH 155

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G    L+ RE E L ++ E + + EI  +L IS  TV  + AS+ +K    T      Y 
Sbjct: 156 GSKVNLSRREREVLRFVMESRGNKEIGELLFISHRTVEKHKASLKKKLLCDTDVELAIYC 215

Query: 241 VRNNIV 246
           ++N+I+
Sbjct: 216 MKNDIL 221


>gi|24374189|ref|NP_718232.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24348702|gb|AAN55676.1|AE015706_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 220

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 71/236 (30%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    + +    +    D   +    + + T         
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALSSAFEHTQWFEADSADALQSVLDSPTVSY------ 54

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +           + L        V+             +      
Sbjct: 55  -------DLVLLDLQMPGSHG--YSTLIHLRSHYPDLPVI------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      + +         A        S D    K
Sbjct: 100 IHYGGSGFIPKSASMETLKEALTAVLYGDIWLPKG--------ADIIPIEDDSTDKMASK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|329954461|ref|ZP_08295552.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328527429|gb|EGF54426.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 217

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 73/232 (31%), Gaps = 22/232 (9%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E E R   V         L R++             A     G    LL+    F    L
Sbjct: 3   EREIRILLVDDHDLVLQGLKRIVEC-SLPEIKNVCTA---SSGQEALLLIASQRFNLFVL 58

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D++  +             +   +   +   +           +     +
Sbjct: 59  DMELPDISGMDIIVRIREK-----DP---QARIIVNTMHEEIWFIKNLIQCSVDGILFKS 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D  +I   +  +                  A +     K  D   G+  ELT RE++ L
Sbjct: 111 IDSTKIAEAIRRVLDGETYYCP--------YAEHVRAQMKRSDE--GRREELTLRELDVL 160

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ISEGK + EIA  L +S NTV+ +   +M K   +  +  I  A+   I+
Sbjct: 161 KRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKLDARNVADLIMTAISKGII 212


>gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus
           suis ST3]
 gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis 89/1591]
 gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus
           suis ST3]
          Length = 200

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L +++     V   ++        G+    L+  +      LD  
Sbjct: 1   MRILVAEDQAMLRDALCQLLGFQDAVEAVLQAEN-----GSQAIALLEKEPVDVVLLDIE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++  +                 +    F              + Y      +
Sbjct: 56  MPEKTGLDVLEWVRGQALP--------VKVVIMTTFKRPGYFERAVKADVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    +    + +                 D+   +   LT  E + L  +
Sbjct: 108 ADLMRTIETVLAGRKEYSPELM-----------------DILLTQRSPLTNLESQLLKLV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG ++ EIA  L +S  TV NY+ SI+ K   + R+ A+  A     +
Sbjct: 151 AEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVRIAQEKGWL 199


>gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 240

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 77/239 (32%), Gaps = 23/239 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S       +++ +  LD   +    +  L     +   +  ++           ++ + 
Sbjct: 9   ASRDLLIQQMVSTISELDGQTAIENALEWLRRECNSERAMFYQFKGPVLLTF---ITCNV 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPV---------------FHTLPENITPPAGMD 127
                +     E      V++                        +  + +       + 
Sbjct: 66  DDAWGKAYRQREFITQDPVIR-CYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLPAIS 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A     +  L   GR I  ++ + +  L     ++ +           LT
Sbjct: 125 YGYMN-HCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFC---SRGLT 180

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+  +  A+   ++
Sbjct: 181 HRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGLI 239


>gi|319940899|ref|ZP_08015237.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805615|gb|EFW02403.1| hypothetical protein HMPREF9464_00456 [Sutterella wadsworthensis
           3_1_45B]
          Length = 249

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 73/253 (28%), Gaps = 31/253 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            T  V  +    + L   I  +             +       ++V         +D+  
Sbjct: 1   MTESVKSITQHHEPLRIFIAAESADETGKMARTFCDASD----IVVTGSATHAADVDAAF 56

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELF-------CPVFHTLPENITPPAGMDNRYC 131
           + + P D++ C  +        +L+R                      I         Y 
Sbjct: 57  ARECPADVLVCDVVLNGADMAPILERAKRTHPKLDILVVTACAQDAVVIRAVLAGATGYI 116

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE------ 185
                   +   + LL   G  +       + L A +   + +                 
Sbjct: 117 LKD-SQENLLTSIRLLRGGGSPVSPTVARSV-LRAIHARTITQPVPPKRDSAPPTSPVGR 174

Query: 186 ------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                       L+ RE E +  +++G +  EI  ILGIS +TV  +I  I +K    +R
Sbjct: 175 PVHQHADDGRVLLSQRESEIIMLLAKGISFSEIGGILGISPHTVTAHIKKIYKKLGVHSR 234

Query: 234 SGAIAYAVRNNIV 246
             A+  A    +V
Sbjct: 235 GEAVYEATCMGLV 247


>gi|51245625|ref|YP_065509.1| Nar family two-component system response regulator [Desulfotalea
           psychrophila LSv54]
 gi|50876662|emb|CAG36502.1| related to two-component system response regulator (Nar family)
           [Desulfotalea psychrophila LSv54]
          Length = 221

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 64/234 (27%), Gaps = 27/234 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       ++ L  + D        +        +                  
Sbjct: 3   TQIMIVDDHPIFRMGMAELLNQEDDFCVCAVAENIAGARRAIAE---------------H 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  ++ D   DLV+ +   +             L   +               
Sbjct: 48  KPDMAIVDITLAGDNGLDLVKEITAEKLC--------SAVLVLSMHDEAVWAERAIRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +      +  + +     L   + ++ K+ +        LT
Sbjct: 100 KGYIMKREASESVISALRNIREGRLHVSPNMMS----LLLDKFHVNKADNQGAPTVDLLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            RE+E    I  G  + EIA  + +   T+  Y   I +K   KT +  I  AV
Sbjct: 156 DREIEVFRLIGSGLPTREIAEQMCLGVKTIGTYRDRIKQKLCIKTGAELIRRAV 209


>gi|319793652|ref|YP_004155292.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596115|gb|ADU37181.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 210

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 61/219 (27%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    S  +    + E   G     +VR        +D  +      D +
Sbjct: 7   VDDHAVVRSGLKAFFSTFVDFRVVGEAATGREAIDMVRTTDMDVLVMDLSMPGQSGIDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           L        P        +       + Y +   +   I   +  +
Sbjct: 67  AMVRAK-----APQLGVLILSGYP---EEHYAVNLIRQGASGYLNKECEPEEIANAIRTV 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I         LLA                   L+ RE +    +++G++   I 
Sbjct: 119 ALGRRYISASVA---ELLAGQL-----ERKDSEPPHKHLSEREFQVFLKLAKGESVGSIG 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  T++ Y   +M K    T S    YA++  ++
Sbjct: 171 EALSLSVKTISTYRTRLMEKMNLSTNSDLTYYAIKTQLI 209


>gi|295699018|ref|YP_003606911.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438231|gb|ADG17400.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 333

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 61/246 (24%), Gaps = 29/246 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
                 + L++ +            +      +G   F           K   +++S   
Sbjct: 83  PAARRSAPLISPLGRFGSAQDRMEFVRQRIRQLGFDSFSYTATRTSSHHKTMFVLTSYES 142

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-----DNRYCSLTFDVA 138
              +         +    +   +    P      +                      + A
Sbjct: 143 QAWLTRYFRERYFELDPRVAHASPTGMPFLWNTADLRADLPRAQLRSERLGALIDMLEAA 202

Query: 139 RIRIGLMLLFP-----------------KGRIILRDRLWEIGLLAAYQANMFKS------ 175
             + G++   P                   R +    + E  + A        +      
Sbjct: 203 GRKSGILTQMPLPEPELSASLCFNSEIGNPRWMTESIVAETLMFAHSIHEFIWTHAKSVI 262

Query: 176 -YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  +   L+  +   L  + +G+   EIA  LG+S + V+ ++  + +    + R 
Sbjct: 263 GIAPAQQQRIALSKLQHAVLKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRV 322

Query: 235 GAIAYA 240
             I  A
Sbjct: 323 QLINVA 328


>gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 461

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++ G +++EIA  L IS NTV  +I +I  K    +R+ A   AVR  
Sbjct: 6   PLSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLEAVRRG 65

Query: 245 IV 246
           ++
Sbjct: 66  LI 67


>gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 210

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 16/219 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLV 87
             R+   D  V     + AL +  G +            D      +D ++S      L 
Sbjct: 3   ALRIALADDQVLVRAALRALLQQQGITVVCEADDGQALLDALATHNVDVVLSDIRMPGLD 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              AL +         R   L    F      +         +         +   +  +
Sbjct: 63  GIAALEQLR---ARGDRTPVLLLTTFDDSELLLRACEAGAQGFLLKDAAPDDLHEAIARV 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++          ++         +            REV  L  ++ G ++ EIA
Sbjct: 120 AAGETLLQP--------VSTDPVRARYQFRDQQAPRETFNEREVAILRLLAGGYSNKEIA 171

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L ++  TV NY+++I+ K  T+ R+ A+  A+   ++
Sbjct: 172 RTLFLAEGTVKNYVSTILDKLGTRDRTRAVLKAITLRVI 210


>gi|146282625|ref|YP_001172778.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri
           A1501]
 gi|145570830|gb|ABP79936.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           A1501]
          Length = 219

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +        + L         +   +       ++                  
Sbjct: 1   MKILLVDDHAVVRQGYASLLKALLPEVSVSEAESGEQALQQVQESI-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +          V          +   L           
Sbjct: 47  -PNLVVLDLGLPGISGLETCRRLRQRLPLLPVLVF--------SMHDELALVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      I          LA   A    S     G+  ++T
Sbjct: 98  SGYLTKRCAPDVLVEAVRKVLAGQTFIE-------QPLATDLACQRPSRSPVRGRLVDMT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    ++ G  + EIA  L IS  TV+N++A +  K    +++  +  A+   ++
Sbjct: 151 PREMEIFIMLARGIGNREIAERLCISSKTVSNHLALLKSKLEVSSQAELVHLAIDQGLL 209


>gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 272

 Score = 98.1 bits (243), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 7/226 (3%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D+ R   V           R++ +D +  +   + A     GA    +           
Sbjct: 40  QDDLRV--VPDDGVGLLRDTRILVVDDSTLYRDYLAAALAAHGAVAPGVAWDGPSLLASF 97

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSL 133
           D+ +      ++    + +   +   +      +   +       I          Y S 
Sbjct: 98  DATMPRVILLNMATRDSATLLKQALALGPHTRVVVIGIAEDDESAIVACAEAGVAGYHSR 157

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +  +  +   +  +     +       ++  +   + +   +       +  LT RE+E 
Sbjct: 158 SESLDELLELIHKVAVGETLCSP----KVSAILLRRLSTLAAQREPAPTELVLTRREIEI 213

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L  +  G+T+ EIA  L I+ +TV +++ +++ K    TR+ A A 
Sbjct: 214 LRMLEAGRTNREIAEQLCIAVHTVKSHVHNLLAKLGVSTRAQAAAL 259


>gi|251795068|ref|YP_003009799.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542694|gb|ACS99712.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. JDR-2]
          Length = 218

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 13/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D  +        +     M              V  D F     D  +      
Sbjct: 3   RILLVDDHPSVGEGTKTMIEQDPEMKVTVVLSAMEALDAVNHDPFDIILCDLNMPGISGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +   + D+   VL          ++ L E         + + S T    ++   +
Sbjct: 63  ELTKRLIQQDPDRR--VLIYTGYEISTHYNLLIEC------GVSGFISKTVSREQLHNNI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I    L ++           K+ +     +  +  R+ + L  ++ G ++ 
Sbjct: 115 RCAMRGEAVIPITLLKQLRRNEVKITRAEKAIE-----EVSINERDQDILQEVASGSSNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S+ TV   +  I  K + ++RS AI  A R  ++
Sbjct: 170 DIAAKLHMSQRTVEYNLTRIFEKLSVRSRSEAIVEAKRLGLI 211


>gi|284993288|ref|YP_003411843.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066534|gb|ADB77472.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 222

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 66/229 (28%), Gaps = 15/229 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L  ++  +  +       +  E +      LV         LD  
Sbjct: 9   IRLVIVDDHAIVRQGLRSILEREPDIEVVGEAASAGEALD-----LVAASRPHIVLLDLK 63

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +S+      +              +     L    F      +         Y     D 
Sbjct: 64  LSAGSDVAGLTLCGQLTATTPAPGV-----LVVTTFLDQQLVLEAIRRGARGYVLKDVDA 118

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +                ++    A    S     G D  LT RE E LT +
Sbjct: 119 VALVAAIRAVRRGESAFDSHSAT---MVVRSLAAPAPSPVAATGPD--LTAREREVLTLL 173

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G +++ I   L IS  T   ++ ++MRK A   R+ A+    +  ++
Sbjct: 174 ARGLSNEAIGRELYISATTAKFHVGNVMRKMAVSRRAEAVYAGSKLGLI 222


>gi|28871170|ref|NP_793789.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213969159|ref|ZP_03397298.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301383947|ref|ZP_07232365.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302064168|ref|ZP_07255709.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302134747|ref|ZP_07260737.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28854420|gb|AAO57484.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926157|gb|EEB59713.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331016409|gb|EGH96465.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 215

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L       AR++  +       R+    ++             
Sbjct: 5   ILIADDHPLFRSALRQALTIGLGPEARLVEAESIAQLESRLGEKADW------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASIVVRSREFGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +                       ++             LT 
Sbjct: 103 GFIPKSSSLEVIQQAVRTVLDGDVWWPPQV--------NEFVSVSDEAKAASAGLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 155 QQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 205


>gi|297162710|gb|ADI12422.1| putative luxR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 233

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 7/228 (3%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D  R      +    D       L   +     +  + E   A    + R    + +  
Sbjct: 5   ADLARPETRIGVFLLDDHEVVRRGLRDLLDAEPDLCVVGEAANARE-AIARAPAVRPRVA 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
              V      +      +    +    L     L    F                Y    
Sbjct: 64  VLDVRLGSSAEGGDHEGIEVCRELRARLPDLACLMLTSFDDDEALFDAIMAGAAGYVLKQ 123

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            + + +   +  +     ++       +       A +         +   L+ RE E L
Sbjct: 124 INGSDLVSAVRTVAGGRSMLDPGATARV------MARLRGPQPSGPVELERLSPREREIL 177

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             I EG T+ +IA  L ++  TV N I++I+ K     R  A   A R
Sbjct: 178 ELIGEGLTNRQIAERLFLAEKTVKNRISTILSKLGVGRRIQAAVIAER 225


>gi|153006198|ref|YP_001380523.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029771|gb|ABS27539.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 232

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 56/216 (25%), Gaps = 5/216 (2%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL---DSIVSSDWPFDLVRCMAL 92
           +  +D        +  L E  G  H +    +      L    S        DL     L
Sbjct: 13  LFLIDDHPVVREGLRMLLEQSGGVHVVGAAGNATGALPLLPERSPDVVLLDLDLGDEDGL 72

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
               +          L          +                    +   +  +   G 
Sbjct: 73  EALPRIRAAAPGARVLILTALRDRARDEDALRAGARGLVLKDAPADVLLEAIRTVASGGL 132

Query: 153 IILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                 L     +           +          LT RE E +  I EG  ++E A  L
Sbjct: 133 WFDPRVLSSTAGVRDRAGGPRAAPTPTAATPALSALTPREREIVALIGEGLRNEEAARRL 192

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GI+  TV N++  I  K     R   + +A  + +V
Sbjct: 193 GITEKTVRNHLTLIFDKVGVSGRLELLVWAYEHGLV 228


>gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 215

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 68/220 (30%), Gaps = 17/220 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             L    D    ++ +   + +       T   G     L+   L      D ++     
Sbjct: 10  KQLMLVDDDPNLVLLVRDYLEFRGY-EVSTAENGLKALELLELQLPDLIICDIMMPEMDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           + LV+ +                 LF        + +       + Y    F+   +   
Sbjct: 69  YSLVKVIRE------DPRTGWIPVLFLSAKGLSQDKVKGLNTGADVYIVKPFEPEELVAQ 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                   L+            +      ELT  EV  +  +++G  +
Sbjct: 123 V----------ESSLRQASRLIKINSRQADGQPSIQARPGVELTPTEVRVVQLVAQGLAN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E+A  + +S+ T+ +++++++ KT    R+    +A+ +
Sbjct: 173 REVAKAMKVSQRTIESHVSNMLNKTGLHNRTELARWALES 212


>gi|237811617|ref|YP_002896068.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|237503468|gb|ACQ95786.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
          Length = 363

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 32/250 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           +   Q +  ++   D +R   +  L  + D   R    +    W  +   L +       
Sbjct: 79  DKRRQNMRFLVLNSDAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLI 134

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           ++                     D      L +                    +      
Sbjct: 135 VV---------------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQA 173

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                     S T     I   L ++   G  +    L      A  +    ++      
Sbjct: 174 LFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLP 233

Query: 182 KDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A
Sbjct: 234 RRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAA 293

Query: 237 IAYAVRNNIV 246
           +  A+ N  +
Sbjct: 294 V--AIYNGWL 301


>gi|330888889|gb|EGH21550.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 197

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 10/192 (5%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             GA    L +        LD  + S    + ++ +          V      L   +  
Sbjct: 12  ADGAQLSSLAQRLKPDIILLDIWMKSVDGLEALQHLLK--------VQPHCKVLILSMHT 63

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                +         Y         +   L  L    R +       +   A       +
Sbjct: 64  DPDMIMRALDIGARGYLLKDTTATELEQALEALRNNERYLSPAIAHTVIERALRGTRSDR 123

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +        + LT R++E L  I  GK++ EIA  LG+S  T+  + + +M++      +
Sbjct: 124 AQAAKER--YHLTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVA 181

Query: 235 GAIAYAVRNNIV 246
           G + + VR  I+
Sbjct: 182 GLVLFCVRERII 193


>gi|196033655|ref|ZP_03101067.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196044984|ref|ZP_03112217.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218902956|ref|YP_002450790.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225863697|ref|YP_002749075.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|228931489|ref|ZP_04094404.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229090808|ref|ZP_04222037.1| Response regulator [Bacillus cereus Rock3-42]
 gi|229121388|ref|ZP_04250618.1| Response regulator [Bacillus cereus 95/8201]
 gi|229184030|ref|ZP_04311244.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|300117584|ref|ZP_07055367.1| response regulator [Bacillus cereus SJ1]
 gi|195994089|gb|EDX58045.1| DNA-binding response regulator, LuxR family [Bacillus cereus W]
 gi|196023986|gb|EDX62660.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB108]
 gi|218536231|gb|ACK88629.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820]
 gi|225789961|gb|ACO30178.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           03BB102]
 gi|228599469|gb|EEK57075.1| Response regulator [Bacillus cereus BGSC 6E1]
 gi|228662077|gb|EEL17687.1| Response regulator [Bacillus cereus 95/8201]
 gi|228692511|gb|EEL46241.1| Response regulator [Bacillus cereus Rock3-42]
 gi|228828170|gb|EEM73890.1| Response regulator [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|298725019|gb|EFI65678.1| response regulator [Bacillus cereus SJ1]
          Length = 212

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 27/216 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I        N+  S +     D  L T RE+  +  I++G ++
Sbjct: 116 KGVYNGQTVMQDVVLDKIK------CNLMGSKEDECKIDTSLFTERELSIIALIAKGFSN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 170 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|118477263|ref|YP_894414.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118416488|gb|ABK84907.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 233

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 27/216 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 26  ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 85

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 86  EATKLICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 136

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTS 203
             ++    ++    L +I        N+  S +     D  L T RE+  +  I++G ++
Sbjct: 137 KGVYNGQTVMQDVVLDKIK------CNLMGSKEDECKIDTSLFTERELSIIALIAKGFSN 190

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 191 KEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 226


>gi|257865603|ref|ZP_05645256.1| LuxR family transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257871940|ref|ZP_05651593.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
 gi|257799537|gb|EEV28589.1| LuxR family transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257806104|gb|EEV34926.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
          Length = 205

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 22/212 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D +     L   ++    +  +     G++     R        +D  +      
Sbjct: 3   LLIVDDDILIRKSLSFALASESDIEVIGTAPDGSTAIEQCRVHQPDIVLMDIRMPGIDGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +  S              +    F     ++   +   + Y   T  +A I   L
Sbjct: 63  SATRLIKKSH--------PLTKVMVLTTFADKKNSLQALSAGADGYLVKTDKIASIAQKL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            LL+    II    L  +                      +L+ RE +    +++G T+ 
Sbjct: 115 RLLYEGTSIIDGPVLPHL-------------TRPETSLLEKLSPRECDIARLVAQGLTNK 161

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           EIA  L +S  T+ N   +IM K A   R+  
Sbjct: 162 EIANQLFLSEGTIRNKTITIMEKLAVSNRTQL 193


>gi|118593225|ref|ZP_01550610.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
 gi|118434116|gb|EAV40772.1| transcriptional regulatory protein [Stappia aggregata IAM 12614]
          Length = 233

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 76/221 (34%), Gaps = 7/221 (3%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  +   +        + +    +GA+H L+    +      + +    WP      +  
Sbjct: 11  LRAISEANAAHHVLDILESNLRRMGATHILITGLPMPNRPIDNLVQRFRWPDQRNDGIES 70

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPE------NITPPAGMDNRYCSLTFDVARIRIGLML 146
           +      + L            T+        ++   AG  ++   +           + 
Sbjct: 71  TSLSANDSALMLGLGSNRARVWTISAGDMEHSDLLASAGEGSQVLVIPVTELYPFQAFVF 130

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDE 205
                  + +  L  +  LAA   +  +   V  G +   L+ RE + L   + GKT+ E
Sbjct: 131 ASGPALQVNKYDLSNLEALAAAAFSRLRELGVISGQRPGALSTRERKVLELTAYGKTAGE 190

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 191 IADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|121607036|ref|YP_994843.1| two component LuxR family transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gi|121551676|gb|ABM55825.1| two component transcriptional regulator, LuxR family
           [Verminephrobacter eiseniae EF01-2]
          Length = 210

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 66/223 (29%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S  + +    E   G     LVR        +D  +     
Sbjct: 3   RIGIVDDHAIVRSGLRQFLSEQVDLRVQGEAANGRQAIDLVRNQEIDVLLMDLSMPGQSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +           +        P        I       + Y +   + A+I   
Sbjct: 63  LDALAMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLNKECEPAQIVQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +       +                      +L+ RE +    ++ G T+
Sbjct: 115 IRTIALGRRYLTPVVAELLA--------RQLGSKDERPAHQQLSEREFQVFLKLARGATT 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 167 GDIAEALSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNRLI 209


>gi|16263826|ref|NP_436618.1| putative response regulator [Sinorhizobium meliloti 1021]
 gi|15139950|emb|CAC48478.1| probable response regulator [Sinorhizobium meliloti 1021]
          Length = 211

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 18/215 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   ++       +     G     L+         LD  +      
Sbjct: 4   VLLVDDHPLLLRGLQDIIAAAPDFDVVGATASGVEAISLISGLQPDIAVLDVAMPGMGGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++R +            +    +F     + P+         +      +    +   +
Sbjct: 64  EILRAIRNPR--------RLTRVIFLTATISGPQIAEALKMGLSGLLLKEYAPEALLDCM 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G+ +  D +     ++          D    +   LT RE E    I  G ++ 
Sbjct: 116 RRVAMGGKWLPADLMANASQVSN---------DAPLERFSLLTPREREISALICGGLSNR 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IA  LG S  TV  ++ +I RK     R+   A 
Sbjct: 167 MIASRLGTSEGTVGIHLHNIFRKLDISNRATLAAL 201


>gi|108803548|ref|YP_643485.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764791|gb|ABG03673.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 220

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 63/241 (26%), Gaps = 33/241 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ +VL  +       +  +      +  +   +   +    +               
Sbjct: 4   QGKIRVVLADDHTMFRQGLKEMLLTGGDIEVVGEAEDGRAALEEIRR------------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   K D  +      ++     +    +          +   VF           
Sbjct: 51  -------HKPDVAILDVEMPEMDAREVMVRLPEASP---HTRAVIVTVFAEARLARELVR 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +    +  +             +        G                  +  
Sbjct: 101 LGARAYVTKNATLQELLA----------AVRSAARAAGGDNVLLAVPRGLIEGSGGPEGC 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  ++ G ++ ++A  L ++  TV  ++A++  K    +R  A+  A+   
Sbjct: 151 ELSERELEILLLVARGLSNRQVASELHLAEATVKRHLANVYAKLNVGSRGEAVRKALSKG 210

Query: 245 I 245
            
Sbjct: 211 W 211


>gi|307308177|ref|ZP_07587892.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307316897|ref|ZP_07596339.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306897519|gb|EFN28263.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306901380|gb|EFN31985.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 211

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 18/215 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   ++       +     G     L+         LD  +      
Sbjct: 4   VLLVDDHPLLLRGLQDIIAAAPDFDVVGATASGVEAISLISRLQPDIAVLDVAMPGMGGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++R +  +         +    +F     + P+         +      +    +   +
Sbjct: 64  EILRAIRGTR--------RLTRVIFLTATISGPQIAEALKMGLSGLLLKEYAPEALLDCM 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G+ +  D +     ++          D    +   LT RE E    I  G ++ 
Sbjct: 116 RQVAMGGKWLPADLMANASQVSN---------DAPLERFSLLTPREREISALICGGLSNR 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IA  LG S  TV  ++ +I RK     R+   A 
Sbjct: 167 MIASRLGTSEGTVGIHLHNIFRKLDISNRATLAAL 201


>gi|297561725|ref|YP_003680699.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846173|gb|ADH68193.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 219

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 56/222 (25%), Gaps = 11/222 (4%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D L     L   +     +  + E   GA    L          LD  +       
Sbjct: 5   LLVDDELLVRSGLRMILDSAPDIEVVGEGGDGAEAVRLAEELAPDVVLLDIRMPGTDGIT 64

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               +            + P  +    F       +        +         +   + 
Sbjct: 65  AAARLTALP--------RPPRVVLLTTFDLDEYVHSALRAGAVGFLLKDTPPRDLIGAVR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH--WGKDFELTGREVECLTWISEGKTS 203
            +     ++       +    A  A    +        +   L+ RE   L  ++ G+++
Sbjct: 117 TVHEGNAMLAPSVTKRMLERFAAPAPADSAAGRAEAVRRLSVLSERERSVLLAVARGRSN 176

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E    LG+   TV  +++ I+ K     R  A   A     
Sbjct: 177 AEAGRDLGMREATVKAHVSRILAKLDMSNRVQAAILAHDAGW 218


>gi|196229708|ref|ZP_03128572.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196226034|gb|EDY20540.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 219

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 64/242 (26%), Gaps = 28/242 (11%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   Q+  +++  + E     ++ L  R          D        +           
Sbjct: 1   MNDTPQKARVLIVEDHEIFREGLAQLINRQPDFMVCGECDDPKGIAAAIEKA-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD ++      DL++ +             +   L   +        
Sbjct: 53  -------EPDVLLLDLMLHGAGGIDLIKQLHTL--------FPKVRILVLSMHDETVFAP 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y        ++   L  +      + R     +   A     +        
Sbjct: 98  RALRAGALGYVMKQEASGQVLAALRAVVVGELHVSRKVGITLMQRAIKMPEL-----SAA 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+ RE+     I  G  + EIA  LGIS  TV  +  +I  K   ++ +  +  A
Sbjct: 153 DGVAKLSDRELHVFELIGAGIPTREIATRLGISIKTVETHRENIKHKLELQSGTELVTRA 212

Query: 241 VR 242
             
Sbjct: 213 KE 214


>gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 272

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 37/60 (61%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L W+  GK++ EIA IL IS  TV N++ +I+RK   + RS A A A R  ++
Sbjct: 211 TPREKEILQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGLI 270


>gi|314964560|gb|EFT08660.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
          Length = 218

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 61/242 (25%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +D      V  +   +D L  +           +                
Sbjct: 1   MLPVRVLLVDDDTLVRRAVRQILEAADDLEVVGEASDGDGAVRQA--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S              +                
Sbjct: 46  --PQADVVLMDLRMPGMSGVEATSRITHSPSSP--------KVVVLTTVTADAAITDAVH 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         I   +  +      +      ++ L         +          
Sbjct: 96  AGASGFLLKASSPDDIVNAVRAVHAGDAFMSPTSARQL-LEQLRGDAGRRVRGAARKTLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++EG T+D IA  L +S +TV  ++++I  K    +R        R  
Sbjct: 155 ALTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVDSRVRIAVLVERAG 214

Query: 245 IV 246
            +
Sbjct: 215 YL 216


>gi|290955569|ref|YP_003486751.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645095|emb|CBG68181.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 15/222 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   +     +  + E   G +   +          +D  +      
Sbjct: 5   VLLADDQDMVRSSMRIMIDVEADLKVVGEASDGEAAIGMAARLRPDVVVMDIRMPRMDGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +  +              L    F                +       A +  G+
Sbjct: 65  AATRSIRSASSPP--------AVLALTTFDLDEYLFGTLRAGAAGFVLKQDSAATLLEGI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      +       +    +   +             E+T RE + L  +    ++ 
Sbjct: 117 RAVARGEGFVSPGPTRRLIERVSVPEDTPYQLPA------EVTRRERDVLALLGRAMSNT 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L I  +TV  ++ +++ K   +TR  A   A R  +V
Sbjct: 171 QIAHRLHIEESTVKYHVQNLLTKLDARTRVQAALIASRAGMV 212


>gi|229488970|ref|ZP_04382836.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
 gi|229324474|gb|EEN90229.1| two component transcriptional regulator, LuxR family [Rhodococcus
           erythropolis SK121]
          Length = 209

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 58/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E   G      V         LD  +     
Sbjct: 11  RLLLADDQALVRGALAALLDLESDLSVVAEVGRGDEVVSAVLEHRPDVALLDVEMPGMDG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  +  D           L    F                +        ++   
Sbjct: 71  IAATAALREAAPD--------TRVLIVTTFGRPGFLRKALHAGAGGFVVKDTPARQLADA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++                      D     +  LT RE + L    +G   
Sbjct: 123 VRRVHAGLRVVDPTLAA----------------DSLVSGESPLTERETQVLRAAHDGAPV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV N+++S M KT   TR+ A+  A  N  +
Sbjct: 167 AAIAGALFLSAGTVRNHLSSAMGKTGASTRAEAVRIAESNGWL 209


>gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115]
 gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti
           VCD115]
          Length = 194

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 46/239 (19%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       + +   +      +      VS       L               
Sbjct: 1   MRLVIADDHPLFRMGLKYALIQQGF-DVVAEAADGVSALEACRRLV-------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++   + L+        +          F          +   
Sbjct: 46  -PDAALLDVKMPGMTGIEVCEKLRLTH-----PEVVGVLITT---FSEPAIVQAARSAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S   D   +   +        ++  +                            LT
Sbjct: 97  RGYVSKETDPESLARQVR-----DIVMHPEIDRL-----------------PHVDVPRLT 134

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ EIA  LG+S +TV +++A +  K     R+ A++ A    ++
Sbjct: 135 PRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHLARLYSKLDAGDRTEAVSRARSIGLL 193


>gi|330960353|gb|EGH60613.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 220

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L       A +               L                
Sbjct: 4   NLMLIDDHALIRAGVRALVANIPGYAIIGETADGAQLASLAQRL---------------Q 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +       ++R +  ++             L   +       +       +
Sbjct: 49  PHIILLDICMKYVDGLGVLRELRRTQ--------PHCKVLILSMLSDPEMILRALEAGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  L    R +       +   +          +      + LT 
Sbjct: 101 GYLLKDATATELERALDALRNDERYLSPAIAHVVIERSNDATPHDGRLESKER--YNLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  TV  + + IM++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIAAGLGLSIKTVETHRSQIMKRLQIYDVAGLVLFCVRERII 216


>gi|311742103|ref|ZP_07715913.1| transcriptional regulatory protein UhpA [Aeromicrobium marinum DSM
           15272]
 gi|311314596|gb|EFQ84503.1| transcriptional regulatory protein UhpA [Aeromicrobium marinum DSM
           15272]
          Length = 202

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 57/223 (25%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E   G                LD  +     
Sbjct: 4   RLLLADDQALVRGALGALLGLESDLEVVAEVGRGDEVVGAAIEHGVHVCLLDIEMPGLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   +           +     L    F              + +         +   
Sbjct: 64  IEVAARLTAE--------VPGCRSLVVTTFGRPGYVRRALEAGASGFVVKDTPARELADA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++      E                   G    LT RE E L     G T 
Sbjct: 116 VRRVHAGLRVVDPALAAE----------------SLAGGANPLTDREAEVLREALGGATV 159

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV NY+++ + KT + TR  A   A     +
Sbjct: 160 ADIAAHLHLSPGTVRNYLSAAIGKTGSSTRVEAARTARSRGWI 202


>gi|54309514|ref|YP_130534.1| LuxR family two component response regulator [Photobacterium
           profundum SS9]
 gi|46913950|emb|CAG20732.1| putative response regulator (repressor) in two-component regulatory
           system with UhpB (LuxR/UhpA family) [Photobacterium
           profundum SS9]
          Length = 231

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 61/234 (26%), Gaps = 37/234 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
            +Q + + L  +     S  + L +    +  +      +     +              
Sbjct: 27  YLQMIKVALVDDHIIVRSGFAQLLSLESDINVVGEFGSALEARKGL-------------- 72

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +  +    L+  +                 +   V  +        
Sbjct: 73  -PGSDADVCILDISMPDESGLSLLADLPSGISC-----------IMLSVHDSAAIVEKAL 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y +       +   +  +   G  +  D   ++            + +      
Sbjct: 121 ESGARGYLTKRCSPDELVQAVRTVASGGCYLTPDLTMKLV-----------TPNRSRQPI 169

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +LT RE +    ++ G     +AV LG+S  TV+ + A+ M K   K      
Sbjct: 170 EQLTKRERQIGEMLALGLDVKAVAVRLGLSHKTVHVHRANAMDKLNVKNNVELA 223


>gi|121603831|ref|YP_981160.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592800|gb|ABM36239.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 210

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L    S  + +  + E   G     LVR        +D  +      D +
Sbjct: 7   VDDHAIVRSGLKQFFSDQVDLRVVGEAASGREAIDLVRNVELDILVMDLSMPGQSGIDAL 66

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +           +        P        +       + Y +   D + I   + ++
Sbjct: 67  AMIRAK-----APDVGILILSGYP---EEHYAVNLIRQGASGYLNKECDPSEIVDAIRVI 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
               R I       +        ++            +L+ RE +    +++G+T+ +IA
Sbjct: 119 SLGKRYITAAVAELLAQQLNRPKDVAAHE--------QLSEREFQVFLKLAKGETAGDIA 170

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +S  TV+ Y   +M K +  + S    YA++N ++
Sbjct: 171 KALSLSVKTVSTYRTRVMEKMSLASNSDLTYYALKNKLI 209


>gi|325289007|ref|YP_004265188.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964408|gb|ADY55187.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 216

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D  +        +     M        +    +++   F     D  +      
Sbjct: 3   HILLVDDHPSVGEGTKSMIE-QEDMKVTIVTSSSEALAILKSQTFDVLMFDLNLPEINGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R +   + +    ++        P F+ L E         + + S T    ++   +
Sbjct: 62  ELTRRVTEIDSNT--PIIIYTGYEITPYFNILVE------AQASGFISKTASREQLVTAI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I    L ++            +       + EL+      L  ++ GK++ 
Sbjct: 114 RCALRGETVIPVSLLRQLRRQDLQIKASGNNEKGVSFDEKELS-----ILKEVARGKSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L IS+  V   +  I  K   ++RS AI  A R  ++
Sbjct: 169 EIADYLLISQRVVEYNLTRIFGKLNVRSRSEAIFEARRLGVI 210


>gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 550

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 69/232 (29%), Gaps = 20/232 (8%)

Query: 23  VSHLPTRSDLLARMIPL----DCTVSWTMRMYALTEYVGASHFLLVRWDLFQ------EQ 72
           +     R  +L  +                M           F+ V W          E 
Sbjct: 323 MDRHLMRLSMLVEIGRAMRVVQNEEEIIRIMAEFAAEFAYGDFVCVVWSNDGQTAVVHEG 382

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  ++  +  D+ R      +     V          V            G+   +  
Sbjct: 383 AMDIEMAVRYRDDVCRRYGCHGEKAKSEVPALLDVEGKSVMEVPFFVGDGRYGVLAVHIK 442

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              +     + +  L   G +          +++                  +LT RE++
Sbjct: 443 KEREAKEAEVYMTALAAIGAM----------MISGKSHGGNDGTVNIDMLSEQLTAREMD 492

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 493 VLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLN 544


>gi|300781785|ref|ZP_07091639.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533492|gb|EFK54553.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 199

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 59/229 (25%), Gaps = 31/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L+ ++ L+  +             G      VR        LD  
Sbjct: 2   IRVLIADDQGLLVGALSALLNLEKDIEVVATCRT-----GDGVVDAVREHNVDVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L   +A S              +    F       T        +       
Sbjct: 57  MPGRTGLELAADLAGS----------PCKVVIVTTFGRPGYLRTALEAGAAGFIVKDTPP 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +       R++      E                  +     LT REVE     
Sbjct: 107 DQLADAVRRAHAGMRVVDPQVAEE----------------SLFTPPSPLTAREVEVAREA 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G    +IA  L +S  TV N+I++IM KT    R  A      N  +
Sbjct: 151 LTGAEIKQIAARLNLSTGTVRNHISAIMTKTGAPNRYAAARTCNDNGWL 199


>gi|220917273|ref|YP_002492577.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955127|gb|ACL65511.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 210

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  +       A +           R+ A                
Sbjct: 2   LRILLADDHAMFRSGLRRILEAEFPGASVGEAATIGELEARLGAQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  ++     + +  +             R   +   ++   P  I       
Sbjct: 47  PCDVLVLDISMAGQNSLNALPGLKERH--------PRLPVVVLSMYGDRPFVIQALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  +       LA   A+              L+
Sbjct: 99  SAYLTKERAPEELIRAIRSVLAGRRYVGDE-------LAEQLADHLAGGGTG-SPHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    ++  ++  EIA  L +S  TV+ Y + I+ K A ++ +  + YAVR+ +
Sbjct: 151 PRELEIFLQLAAARSVSEIAERLQLSVKTVSTYRSRILEKMALRSNAELMQYAVRHGL 208


>gi|329905999|ref|ZP_08274320.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547387|gb|EGF32216.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 223

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D       +   +        + E          V   +      D  + S  
Sbjct: 10  ATILLVDDHALVRAGIRSLIDQLSDFVVIAEASDPVEALAWVAQRVPDIVVTDITMGSHS 69

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             DLVR +                 +   +  +            + Y       A + I
Sbjct: 70  GLDLVRRLREQHPQM--------AIVILSMHASEELVTEALRLGASAYLLKEAAPAELEI 121

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +      +      ++           ++  V       LT R+++ LT I+  K 
Sbjct: 122 ALQAIRRNETYLSPAVSTKM------IERFVRAPVVAVNPLDALTTRQLQILTMIAGRKG 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L +S  TV  + A IM +   +   G +  AVR+ +V
Sbjct: 176 TKEIAFELDLSEKTVAAHRAQIMERLGVRDVVGLVLLAVRHGLV 219


>gi|240139317|ref|YP_002963792.1| putative response regulator; Input and output domains: CheY and HTH
           LuxR family [Methylobacterium extorquens AM1]
 gi|240009289|gb|ACS40515.1| putative response regulator; Input and output domains: CheY and HTH
           LuxR family [Methylobacterium extorquens AM1]
          Length = 218

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V I+L  +          L  R      +   +                    + L 
Sbjct: 1   MSEVTILLVDDHPVVREGYRRLLERQAGFRVVAEAETAA---------------EAYRLF 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +      + +R +   + D    +L                 +    
Sbjct: 46  RETAPSVVVMDLSLGGPSGLEAIRNI--RQWDGQARILVFTMHQGSAF------ALKAFE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y + +   + +   +  +    + +  D   E+           +          
Sbjct: 98  AGAAGYVTKSSAPSELVAAVTAVARGRQAVSADIAQELA---------AERLAGKNSPLD 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  REVE L  ++ G  ++ IA  L +S  TV NY   I  K   +  +  +  A    
Sbjct: 149 DLAPREVEILRLVASGMATEAIAEALHLSPKTVQNYHYGIKAKLGARNDAHLVWLAASAG 208

Query: 245 IV 246
           ++
Sbjct: 209 VL 210


>gi|157375088|ref|YP_001473688.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
 gi|157317462|gb|ABV36560.1| putative nitrate/nitrite response regulator; NarL [Shewanella
           sediminis HAW-EB3]
          Length = 213

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 79/228 (34%), Gaps = 20/228 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +   V   PT    LA++I L+  +    +  +     G     L          LD  
Sbjct: 4   AQILLVDDHPTLRQGLAQLISLEDNLDVVAQAGS-----GDEAISLAIKHSPDLILLDLN 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +  +  +E         +   +   V  +  + +       + Y     + 
Sbjct: 59  MKGLSGIDTLIALKRAEV--------QSKIVIFTVSDSESDVLQAIKFNTDGYLLKDSEP 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   + L      +I          L    A   +           LT RE++ L  I
Sbjct: 111 EELIEKINLAIQGEFVIS-------NPLTQIMARSLRPNSKKVSPLESLTQRELQNLKLI 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + GK++ +IA  LGI+  TV  ++ ++++K   K+R  A  +AV + I
Sbjct: 164 AAGKSNKDIANKLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKI 211


>gi|148257202|ref|YP_001241787.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146409375|gb|ABQ37881.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 206

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 68/237 (28%), Gaps = 33/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S    L +    L  +   D        +                  
Sbjct: 1   MRVLIVDDHPIVASGCRALLSTDPDLELLEASDAESGEASFVAR---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +   F+L R +   E             +   +               
Sbjct: 45  RPDVSVIDINLPTVSGFELARRILAHE--------ASARLIMFSMNDDPVFAARAIDIGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S + D   +   +  +   G  +       I          F    V      +LT
Sbjct: 97  KGYVSKSGDPNDLAEAIREVARGGSYLPPAIARSIA---------FAGATVAQSPLAKLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E L  +S GK+  EIA ++  S  TV N  + I +K   +T    +  A+ N 
Sbjct: 148 PRELEILRLLSAGKSLSEIAWLIHSSYKTVANTSSIIRQKLGVRTSGELVRLAIENG 204


>gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus
           thermophilus LMD-9]
          Length = 200

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++ L+  V             G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDALCQLLMLEDDVE-----EVHAASDGQEAITLLEKEEVDVAILDIEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  ++        +    +    F          A   + Y      ++ + 
Sbjct: 60  TGLDVLEWIRANQ--------RETKVVIVTTFKRKGYFKRALAAHVDAYVLKERSISDLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                    +  L+ RE E L  +++G 
Sbjct: 112 ATIHTVLAGQKEYSPELVEGVAF-----------------DNNPLSQREQEVLAMVAQGS 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A   + +
Sbjct: 155 TNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199


>gi|327537688|gb|EGF24399.1| two component transcriptional regulator, LuxR family
           [Rhodopirellula baltica WH47]
          Length = 210

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 62/221 (28%), Gaps = 19/221 (8%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   D L+  I             A TE  G    +           +D  + 
Sbjct: 1   MVLVDDHPLMRDGLSMRIKAQPCWEVCGM--AATEDEGFDVII---EQCPDLALVDISLG 55

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    +L++ +                 L    F                Y +      +
Sbjct: 56  TGNGIELIKRVRSRNSS--------VKFLAISAFKESLYAERAMRAGALGYLNKQETNEK 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R +         L A   A+   +  V       L+ RE E    I +
Sbjct: 108 LIEAIRTVLKGERFLSET------LQARLIASALGNTSVEQEPTERLSDREKEIFRLIGD 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G T+  IA  L +S +T++ +   + RK    T +     A
Sbjct: 162 GLTTGAIADKLFLSTHTIDTHREHLKRKLNVDTAAELSRMA 202


>gi|296877409|ref|ZP_06901446.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296431570|gb|EFH17380.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 199

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 65/229 (28%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L +++ L         + A     G     L+         LD  
Sbjct: 1   MRLLVAEDQSMLRDALCQLLLL--QEDVEDVLQA---GDGQEAIRLLGTHPVDIAILDIE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++      +         +   +    F              + Y      +
Sbjct: 56  MPIKTGLEVLEWAKSQQ--------PQLKVVIVTTFKRPGYFERALKAGVDAYVLKERRI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +    +    + +  I                       L+ +E   L  +
Sbjct: 108 TDLMATLHAVLAGQKEYSPELMEGILT-----------------HPNPLSPQEKAVLKEV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  T+ NY+++I+ K   + R+ A   A     +
Sbjct: 151 AKGASNQEIADRLFLSNGTIRNYMSAILTKLDAENRTEAAKIAQEKGWL 199


>gi|226308199|ref|YP_002768159.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187316|dbj|BAH35420.1| putative NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 209

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 58/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E   G      V         LD  +     
Sbjct: 11  RLLLADDQALVRGALAALLDLESDLSVVAEVGRGDEVVAAVLEHRPDVALLDVEMPGMDG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +  +  D           L    F                +        ++   
Sbjct: 71  IAATAALREAAPD--------TRVLIVTTFGRPGFLRKALHAGAGGFVVKDTPARQLADA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++                      D     +  LT RE + L    +G   
Sbjct: 123 VRRVHAGLRVVDPTLAA----------------DSLVSGESPLTERETQVLRAAHDGAPV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV N+++S M KT   TR+ A+  A  N  +
Sbjct: 167 AAIAGALFLSAGTVRNHLSSAMGKTGASTRAEAVRIAESNGWL 209


>gi|171317077|ref|ZP_02906281.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171097778|gb|EDT42602.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 204

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       ++ +  R+  L  +               L               
Sbjct: 1   MRVVIVDDHPTVQLALTSILERNVNLKVVGTASDGGEGLRLCREL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      DL++             ++         +      +   A   
Sbjct: 46  KPDLLIVDIDLDGMDGIDLIQR-----VRIKDATVKILVFSG---YSAELFALRCHAAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y + + DV  +      +         D             N   S          L+
Sbjct: 98  NGYVNKSEDVTHVLSAANAVLAGFHCFPLDI------------NAMASGSGPHAAFAMLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L ++++G ++ EI   L +S  T++ + A+I+ K          A+A  ++++
Sbjct: 146 ERELTVLRYLAKGLSNKEIGDSLSLSNKTISTHKANILAKLGFTNVVDLAAFAKAHHLI 204


>gi|167584977|ref|ZP_02377365.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 227

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 56/226 (24%), Gaps = 25/226 (11%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +             A           L          +D  
Sbjct: 24  ARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAESLEPDLALMDVG 77

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           ++      L                     L   +   +           + Y       
Sbjct: 78  MNGMNGIALAGVFHER--------FPGIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPA 129

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + I   +  +                      A               LT RE + L  +
Sbjct: 130 SEIVRAIGAVLAGHTFFSEG-----------LAARMIHASAAASPLDRLTPRERDILDAL 178

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 179 AEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 224


>gi|90417979|ref|ZP_01225891.1| possible response regulator in two-component regulatory system
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337651|gb|EAS51302.1| possible response regulator in two-component regulatory system
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 221

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 16/195 (8%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
           VGA        D+ +    D I+     P  ++  +    K  +         L      
Sbjct: 32  VGAGTCASDIIDIGKSTVPDVILLDTQVPGRVIEAIVSFRKMSH-----LARILVFTASE 86

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           ++   I       + Y      +  +   +  +      +      ++     +      
Sbjct: 87  SVDCAIEALEAGADGYALKESTLDELENAISCVMSGNNYVNPRLATKVIRALHHPVQQTA 146

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE + +  + +G T+  IA  L I   TV +Y+  IM+K     R 
Sbjct: 147 GEMPV------LSIREEQVVALLMKGCTNKNIAAALNIREKTVKHYMTMIMQKLDVSNRL 200

Query: 235 GAIAYA----VRNNI 245
             +  A     R  +
Sbjct: 201 EVVVAAHGYSHREGL 215


>gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2]
 gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
 gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas
           aeruginosa 39016]
          Length = 496

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 69/235 (29%), Gaps = 17/235 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    +      +  ++     +       A +E  G     L+         
Sbjct: 263 RKSEERFAKAFRMAP----VPSLVLYGDDLQALDINQAFSETFGYQAEELLGESTVACGL 318

Query: 74  LDSIVSSDWPFDLVR----CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                +      L +                           V     + +         
Sbjct: 319 WQDGGAERLGELLAQSGSVRNVQLRLQHKDRNGLDCLVSAEAVSLNEQDCV--------- 369

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             +L     R R  + L+     ++     +   L+         +      +  +LT R
Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|86158187|ref|YP_464972.1| two component LuxR family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774698|gb|ABC81535.1| two component transcriptional regulator, LuxR family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 210

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     S +  +       A +           R+ A                
Sbjct: 2   LRILLADDHAMFRSGLRRILEAEFPGASVGEAATIADVQERLGAQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  ++     + +  +             R   +   ++      I       
Sbjct: 47  PWDVLLLDISMAGQNSLNALPPLKERH--------PRLPVVVLSMYGDRQFVIQALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +    R +  D       LA   A+              L+
Sbjct: 99  SAYLTKERAPEELIRAIRSVLAGRRYVGDD-------LAEQLADHLAGGGTG-SPHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    ++  ++  EIA  L +S  TV+ Y   I+ K A ++ +  + YAVR+ +V
Sbjct: 151 PRELEIFLQLAAARSVSEIAERLQLSVKTVSTYRGRILEKMALRSNAELMQYAVRHGLV 209


>gi|28867788|ref|NP_790407.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213967666|ref|ZP_03395813.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301382726|ref|ZP_07231144.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302063479|ref|ZP_07255020.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130731|ref|ZP_07256721.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851023|gb|AAO54102.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927442|gb|EEB60990.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331017621|gb|EGH97677.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 209

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLARDLQVVGEASNGEQLLETLRHVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   + +             
Sbjct: 48  -CEVVLLDISMPGVNGLEAIPRIRALTHPP--------AILVLSMHNEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPDLADRMVFEVGLTDSRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKMKLNSLADLVKYAMEHKLL 209


>gi|124268421|ref|YP_001022425.1| response regulator [Methylibium petroleiphilum PM1]
 gi|124261196|gb|ABM96190.1| response regulator [Methylibium petroleiphilum PM1]
          Length = 219

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  +  +   ++  L  +    A++            + A                 F
Sbjct: 4   ILLLEDLPEIRVWLKALALQVFPQAQITEAARVHDAREHISAQ---------------RF 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      ++V  +  ++ +    V+         +                 
Sbjct: 49  DLALVDLGLPDGSGVEVVAALREAQPEAQSVVV--------TIHDDDDHLFPALQAGAFG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y        ++   L  +      +       +    A Q                LT R
Sbjct: 101 YLLKEQSREQLADQLRRISAGEPPLSPSIARRVIQYFAAQQRSQFREKTPLMPGVTLTER 160

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E L  +++G T  EI V L +SR+T+ +Y+  I RK    +R+     A R  +
Sbjct: 161 ENEVLLRVAKGFTLPEIGVQLNLSRHTIADYVKQIYRKLNVSSRAEVALEAQRLGL 216


>gi|170701000|ref|ZP_02891981.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170134097|gb|EDT02444.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
          Length = 214

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 56/230 (24%), Gaps = 25/230 (10%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
                R   V   P   D L   +             A           L          
Sbjct: 7   DRPAARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLAL 60

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  ++      L                     L   +   +           + Y   
Sbjct: 61  MDVGMNGMNGITLAGVFHER--------FPGIRVLMLSMHDNIEYVTQAVRAGASGYLLK 112

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
               + I   +  +                      A               LT RE + 
Sbjct: 113 DSPASDIVRAIGAVLAGQTFFSEG-----------LAARMIQASATASPLDRLTPRERDI 161

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L  ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 162 LDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|186473154|ref|YP_001860496.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184195486|gb|ACC73450.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 209

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 72/237 (30%), Gaps = 29/237 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++ N    +R   V   P     +  +   D  +             G     +V     
Sbjct: 1   MIRNEPSMKRIVIVDDHPMIRGAIVSVFRSDSELQIVGE-----SGDGEEGLRMVLSLKP 55

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  + S     ++R +         + ++       P       ++       N 
Sbjct: 56  DLAVLDLDLPSLDGLSMIRRIRAQ-----DDSMRILVLSAKP---DHVMSLHTQQAGANG 107

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y S   ++  +      +                LL          +    G    L+ R
Sbjct: 108 YVSKGRELTEMLTAARTV----------------LLGFDCFPANAPHANKAGGLDVLSPR 151

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L +++ G ++ EIA  L +S  TV+ Y   +  K    + +  I +A  + ++
Sbjct: 152 EMEVLQYLARGVSNKEIASRLFLSDKTVSTYKTRLCEKLGLSSLAALIEFATLHKLI 208


>gi|50086430|ref|YP_047940.1| putative two-component response regulator [Acinetobacter sp. ADP1]
 gi|49532406|emb|CAG70118.1| putative two-component response regulator [Acinetobacter sp. ADP1]
          Length = 216

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++           R+ +  E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNELYQRLESGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +  +                 +       +       A   
Sbjct: 48  -PDLVMLDLNLPGASGFSALVHVRAQ--------YPSLPIIVVSAHEEVSVIQRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    +                   +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRHVLEGEIWLPPNLPNNLSF-----DPRASDETELAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|9957557|gb|AAG09418.1|AF180147_10 response regulator TobT [Pseudomonas putida]
 gi|2213650|gb|AAC45439.1| response regulator [Pseudomonas putida]
 gi|298682346|gb|ADI95407.1| TodT [Pseudomonas putida]
          Length = 227

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 32/222 (14%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-----ASHFLLVRWD----LFQEQKLDS 76
           L   SD  + +  LD   +    + +L   +G      S   +   D          LD 
Sbjct: 19  LRHMSDRASVIYILDDDNAVLEALSSLVRSIGLSVECFSSASVFLNDVNRSACGCLILDV 78

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D+ R +            ++   +F      +P  +         + +  F 
Sbjct: 79  RMPEMSGLDVQRQLKELG--------EQIPIIFISGHGDIPMAVKAIKAGAVDFFTKPFR 130

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +                    LA  Q +              L+ RE + L +
Sbjct: 131 EEELLGAIRAALK---------------LAPQQRSNAPRVSELKENYESLSKREQQVLKF 175

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +  G  + + A+ L IS  TV  +  +IMRK    +    + 
Sbjct: 176 VLRGYLNKQTALELDISEATVKVHRHNIMRKMKVSSIQDLVR 217


>gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
 gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius
           sp. 217]
          Length = 202

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 65/224 (29%), Gaps = 28/224 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    +++A  + +            + E + ++  +  +   FQ   LD ++   
Sbjct: 6   LADDHDLVREMIAEYLRVQGGFDVF-----VAESLESALKVQEKNVPFQLVMLDLMMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  M          V          V      +          +   T D   + 
Sbjct: 61  DSLSGLAVMKSRA---GCPVAILSGTGTPEVARRALRSWAA------GFLPKTLDPQSLV 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +                       +  +S D        LT RE + L  + +GK
Sbjct: 112 AAVHHMLLGETY--------------TPLDFLESGDTEAEGKVHLTPRETDVLVGVLDGK 157

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L I   TV  ++ ++ RK   K R+ A   A    +
Sbjct: 158 SNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTQAAMIARDMGL 201


>gi|255036046|ref|YP_003086667.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948802|gb|ACT93502.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 214

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 74/244 (30%), Gaps = 32/244 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V  +L  + E     +       + +  +  +        ++  ++           
Sbjct: 1   MNRVRTILADDHEIFLDGLEKTLCEIEEIDIVAKVSRGNDVIYKLETIS----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +++  +  S          +   L    +           
Sbjct: 50  ----PDLLILDVNMPQKDGVEILSYIQKSSL--------KAKILVLSYYLDYALIKKVLN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--K 182
                Y         +   +  +      +  D + EI              D H     
Sbjct: 98  MGIMGYVPKDAGKEELHAAVRSIMDGKPYL-PDSVKEI------IKTRESRPDPHDDFVS 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + LT REV+ LT ++   ++ EIA  L +S  TV  Y  SI+RK A K  +  + +A +
Sbjct: 151 MYNLTKREVDILTEVAREFSTAEIADKLCLSEYTVETYRKSIIRKLAAKNIASLVNFAHK 210

Query: 243 NNIV 246
             ++
Sbjct: 211 WKLI 214


>gi|330878387|gb|EGH12536.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330963854|gb|EGH64114.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 209

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLARDLQVVGEASNGEQLLETLRHVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +           +     L   + +             
Sbjct: 48  -CEVVLLDISMPGVNGLEAIPRIRAL---TNPPAI-----LVLSMHNEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPDLADRMVFEVGLTDSRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKMKLNSLADLVKYAMEHKLL 209


>gi|329923008|ref|ZP_08278524.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941781|gb|EGG38066.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 202

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 36/238 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +D      +  L +R   +      +  V+       +               
Sbjct: 1   MNILIVDDDPLVCQSLRLLLSREADMEVTATANDGVAAIQCCEEVL-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +        +  +Q         F              
Sbjct: 47  -PDIVLMDIRMPGMDGIQAARHIKQK-----WPQVQIMM---LTTFQDEHSIRLALLAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +  V+ +   L  L     ++  + L  + L                    +LT
Sbjct: 98  EGYMLKSTQVSSMAQQLRALASGSSVVDANVLKTLML-------------PEKENRADLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  ++ G ++ EIA  L IS  TV N ++ I+ K   + R+    Y  R ++
Sbjct: 145 PRENDILGLVALGCSNREIAEQLFISEGTVRNTLSIILDKLELRDRTQLAIYYWRQSL 202


>gi|307153815|ref|YP_003889199.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984043|gb|ADN15924.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 744

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 28/230 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++++ L  ++EQ+   +         +  +                         LL  
Sbjct: 535 SEIHVFLIEDEEQKRVGLRQALRSQTGI-EIYSEATNADT-------------GLVLLTS 580

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +L++     ++    + L+              E +   A 
Sbjct: 581 VAGGDVALVDVSLPDKSGVELIKAFQQVQETSENSSLKLCM---LIETDNDHEVLAAIAA 637

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               YC  T  + ++   + L       +      +I LL             ++  +  
Sbjct: 638 GAQSYCLKTAPIEQLVEAIRLTHAGQFYLHPLIASKILLLVK-----------NYQGETI 686

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           LT  E+E L  I+EG +SDE+A  LGI+ N +  ++A+I+ +        
Sbjct: 687 LTQTELEVLRLIAEGTSSDEMAQQLGITLNMIKTHLANILNRLYISDLIQ 736


>gi|17547880|ref|NP_521282.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430186|emb|CAD16949.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 231

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 14/230 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V       D L + +     +  T    +  E +     LL+         +D  
Sbjct: 13  IRVAIVEDDSGFLDALTQALACAPDMHLTGVAGSRAEGL-----LLLDGAPADVLLVDLG 67

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++   A              + +    F      +         Y       
Sbjct: 68  LPDGSGIDVIEAAARKWS--------ACSIMVSTNFGDEIHVMRSIEVGAAGYLLKDSSA 119

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTW 196
           ARI   +  L   G  I      +I        ++  + +        L + RE E L  
Sbjct: 120 ARILDEIRSLASGGSPISPLIARQILARFRQGGSLSAADEAPASASSPLLSAREKEVLDL 179

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I++G T+ EIA ++ +S  TV  ++  I  K    +++ AI  A    ++
Sbjct: 180 ITKGFTAQEIAKLMALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLL 229


>gi|320533316|ref|ZP_08034012.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134465|gb|EFW26717.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 218

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 17/229 (7%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +S +  R+D L              ++ AL +          R  L  
Sbjct: 1   MIVDDQRATRMGLSLIINRADDLRVTAQATHGQDALDQLAALLQE---------RRPLPD 51

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D    ++                L    +          +   + +
Sbjct: 52  VVLMDVRMPVLNGIDATARISQLYPSI--------RVLVLTTYDQDEFAFGALSAGASGF 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                  A +   L  +     I+      E+                   +  +L+ RE
Sbjct: 104 LLKDTRTADLHQALRAVSSGDAILTPRITRELLNRHMLSPVTSPRQRAARQRLDDLSPRE 163

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E    +++G T+ EIA  L ++ ++V   +  I+ K   + R   +  
Sbjct: 164 REVADLVAQGLTNAEIAQRLVLAPDSVKKNVTRILTKLDLRDRVQLVIL 212


>gi|289642992|ref|ZP_06475125.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289507214|gb|EFD28180.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 216

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ ++L  +       +  +      +  +  +            L             
Sbjct: 4   DRLRVLLCDDHRIVRGGLQRMLAEDSGILVVADVGTAAEAVAAAGRL------------- 50

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +        +  +  +              L   +   +       A 
Sbjct: 51  --QPDIVVLDIGLPDGSGISAIGRILGAS--------PASRVLMLTMHDDVAYLREAFAS 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +    R +         L AA                  
Sbjct: 101 GALGYVLKAAADIELIQAIHDVARGERYVHPT------LGAALLGRDTNVEGRSVSTVAG 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  ++ G T+ E+A +L +S  TV  Y   + +K   ++R+  +  A    +
Sbjct: 155 LSEREAEILRLLALGHTNPEMAEVLDLSVRTVETYRYRLQQKVGLRSRAELVRLAREMGL 214

Query: 246 V 246
           V
Sbjct: 215 V 215


>gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 217

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D  ++  GL  +      + RD L  +        +     D     + ELT 
Sbjct: 103 GLFYFEDDFDKVIRGLKGILSGENWLSRDILNRLLGYLVNLNHTVTELDTKL--EIELTR 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ LT + +G ++ +IA  L +S +TV +++ SI RK   K R  A+A+A RN
Sbjct: 161 REMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKRN 215


>gi|256828839|ref|YP_003157567.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578015|gb|ACU89151.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 215

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 60/213 (28%), Gaps = 23/213 (10%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGA-----------SHFLLVRWDLFQEQKLDSIVSSDWP 83
           R++ ++      M + ++ +  G                  +        LD  +     
Sbjct: 5   RILLVEDDHLLRMGLKSMIDLHGEYVIDDDVANGKDALRSFKMKKQDVILLDLRLPDIPG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++++ +   E             +                   N Y     +   + + 
Sbjct: 65  TEVLQRIRQIE--------PSVKVIVLTASDDNDFIFEALEHGANAYVLKGANPDELFLA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  I       I           K+          LT RE E +  I +G  S
Sbjct: 117 VHYALEGGLFISPHLAKVIVRDYLLVNRQRKALPPMKN----LTAREKEIVRHIIDGWKS 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            EIA  L IS  TV+ + ++I+ K    + +  
Sbjct: 173 KEIAESLFISIKTVDKHRSNILGKLGINSSNQL 205


>gi|288958810|ref|YP_003449151.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911118|dbj|BAI72607.1| two-component response regulator [Azospirillum sp. B510]
          Length = 223

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 31/242 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       +  L  + D                                    
Sbjct: 1   MNVLIADDHLLFRDGLRRLLAQFDADMTFFEASTYDEVRALCD--------------GTR 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +     F  +  +  S       V+    +          + +       
Sbjct: 47  PFDLILLDLGMPGWSGFSALGDIHASLPKALLVVVSGSEKRS--------DLLAALENGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW---------EIGLLAAYQANMFKSYDV 178
             Y   +     +   L L+   G  +    +               +     M  S   
Sbjct: 99  AGYIPKSSSAKVLLGALQLVLAGGIYLPEQAIRGGDRLEQTHGGYGSSGSGDAMEDSAAS 158

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G   +LT R+ + L  + +GK++ +IA  LG++  TV  ++ +I+R    + R+ A  
Sbjct: 159 GGGNGDQLTPRQRDVLVRLRDGKSNKQIAHELGLTEGTVKVHVTAILRHLGVRNRTQAAL 218

Query: 239 YA 240
            A
Sbjct: 219 TA 220


>gi|239927963|ref|ZP_04684916.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 219

 Score = 98.1 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 24/237 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +D    + +S +   ++ +  +                          LV     
Sbjct: 1   MLLVDDDPLVRAGLSFMMGGAEDIEIVGEAADGGEVE---------------ALVDRTRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  + +         +                 +    FH   + +         
Sbjct: 46  DVVLMDIRMPTVDGLAATETLRRRADAPQ--------VVVLTTFHADEQVLRALRAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +       A I   +  +     ++      ++   AA  A   +       +   L  R
Sbjct: 98  FVLKDTPPAEILAAVRRVAAGDPVLSPAVTRQLMAHAAGTAADTRRAHARQ-RIAALNDR 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E    +  G  + EIA  L +S  TV  +++  + K     R      A    ++
Sbjct: 157 EREVAVAVGRGLANAEIAARLFMSVATVKTHVSRTLAKLGLNNRVQIALLAHDAGLL 213


>gi|271965145|ref|YP_003339341.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508320|gb|ACZ86598.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 213

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 53/221 (23%), Gaps = 11/221 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G      V         +D  +     
Sbjct: 3   RVLIVDDEALVRTGLRMILEAADDLEVVAEAASGVEAVTAVARHWPHVVLMDVQMPHMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              ++ +  S              +    F       +        +         +   
Sbjct: 63  VAALKEINRSPNPP--------KVVMLTTFDRDEYVYSALRAKAAGFLLKDTAPRDLIAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +         ++ A+             +   LT RE + +  ++ G  +
Sbjct: 115 VRTVAGGSATLAPTVTKR--MIDAFAGQQAPDARAARARLAALTDRERQVVQVVARGLAN 172

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            EIA  L +S  TV  +++  + K     R           
Sbjct: 173 AEIARELSMSETTVKAHVSRSLAKLGLANRVQIALLVRDAG 213


>gi|228945442|ref|ZP_04107796.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814245|gb|EEM60512.1| Response regulator [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 212

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 66/215 (30%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++ +D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIVDDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKLICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I           K  +    K    T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKI----KCNLMESKEDECKIDKSL-FTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|66044632|ref|YP_234473.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|302187186|ref|ZP_07263859.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|63255339|gb|AAY36435.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|330945540|gb|EGH47068.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330968918|gb|EGH68984.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 215

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L       AR++  +       R+    ++             
Sbjct: 5   ILIADDHPLFRSALHQALSIGLGPDARLVEAESIAQLESRLGEKADW------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASIVVRSREFGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +                       ++             LT 
Sbjct: 103 GFIPKSSSLEVIQQAVRTVLDGDVWWPPQV--------NEVISVSDEAKAASAGLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 155 QQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 205


>gi|206564661|ref|YP_002235424.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198040701|emb|CAR56687.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 214

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 56/227 (24%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +             A           L          +D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLALMDV 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++      L                     L   +   +           + Y      
Sbjct: 64  GMNGMNGITLAGVFHER--------FPGIRVLMLSMHDNIEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASATASPLDRLTPRERDILDA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|196228166|ref|ZP_03127033.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196227569|gb|EDY22072.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 213

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 16/198 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           + A      A   L       +   LD  +        +R            VL     L
Sbjct: 30  VRAFERCEDALEALPTADPKPEVILLDVGLPGMDGLQGIREFKA--------VLPDAAML 81

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              VF    +         + Y   +  + R+   +      G  +       +  + + 
Sbjct: 82  VLTVFEDDDKIFRAICAGASGYLLKSEPMNRVAEAIEQALAGGSPMNPRVARRVLEMFSK 141

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                       GKD+ LT RE   L  + EG    +IA  L ++++T +  +  I +K 
Sbjct: 142 L--------NPQGKDYGLTERETAVLELMVEGLGKKQIADRLDLNQHTTDYVMRCIYKKL 193

Query: 229 ATKTRSGAIAYAVRNNIV 246
                + A++ A++  I+
Sbjct: 194 HVNGMTAAVSMALKEGII 211


>gi|187922381|ref|YP_001894023.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187713575|gb|ACD14799.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 218

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +        +TE   GA          +    LD  +     
Sbjct: 4   RILLADDHAVVRQGVRQLLLDRGVAREVTEAQSGAEALDAAARHAYDVVLLDISLPDMNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++++ M             R   L   ++      +         Y S T D A++   
Sbjct: 64  VEVLKRMKRKA--------PRAAVLMFSMYREDQYAVRALKAGAAGYLSKTVDAAQMISA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + +       +          + S+D       +L+ RE + L  ++ GK  
Sbjct: 116 IKQVAAGRKYVSPAMAEALA--------DYVSFDGEQLPHEKLSDREYQTLCMLASGKRL 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IAV L +S  TV+ Y   ++ K   +  +    Y + N ++
Sbjct: 168 TDIAVALSLSVKTVSVYRTRLLEKMKLRNNAELTFYVMSNRLI 210


>gi|107027523|ref|YP_625034.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116693765|ref|YP_839298.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|170736933|ref|YP_001778193.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|105896897|gb|ABF80061.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116651765|gb|ABK12405.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|169819121|gb|ACA93703.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 214

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 56/227 (24%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +             A           L          +D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAESLEPDLALMDV 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++      L                     L   +   +           + Y      
Sbjct: 64  GMNGMNGITLAGVFHER--------FPGIRVLMLSMHDNIEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASATASPLDRLTPRERDILDA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|295676996|ref|YP_003605520.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
 gi|295436839|gb|ADG16009.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 210

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 16/184 (8%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LVR   F    LD  +      D +R +     ++          L    +      I  
Sbjct: 42  LVREQAFDVVLLDIAMPDKNGIDTLRVIKQVRPEQG--------VLILSGYPESQYAINL 93

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N Y +   +   I   +  +    R +       +                    
Sbjct: 94  LRAGANGYLNKDCEPEEIVRAIRSVARGHRYLSEAVADTLA--------DNLDKPAAGRP 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE +    ++ G+   EIA  L +S  TV+ Y A ++ K      +    YA++
Sbjct: 146 HEALSEREFQIFCKLAAGQLPTEIAEELHLSVKTVSTYRARVLEKMRLANNADLTYYAIK 205

Query: 243 NNIV 246
           N ++
Sbjct: 206 NGLI 209


>gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 211

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 61/231 (26%), Gaps = 30/231 (12%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
              R             LA ++ L+  +         T   GA   + V          D
Sbjct: 11  SPIRVLLAEDQTLVLGALAALLSLEDDLDVVG-----TAADGAEALMQVHTLRPDVLVTD 65

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      DL   +             +   +    F                Y     
Sbjct: 66  IEMPRLSGLDLAERVRQEA--------PQTRVVIVTTFTRAGYLRRALDAGARGYLLKDA 117

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +   GR I      EI                 W     LT RE++ L 
Sbjct: 118 PSHELADAIRRVHAGGRAIDAGLAEEI-----------------WDAQSPLTEREIQVLR 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               G+++  IA  LGI   TV NY++  + K   + R+ A   A     +
Sbjct: 161 AAETGRSTAAIAAELGIGVGTVRNYLSEAIGKLGAENRAEAARKARERGWL 211


>gi|145221325|ref|YP_001132003.1| two component LuxR family transcriptional regulator [Mycobacterium
           gilvum PYR-GCK]
 gi|315441791|ref|YP_004074670.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213811|gb|ABP43215.1| two component transcriptional regulator, LuxR family [Mycobacterium
           gilvum PYR-GCK]
 gi|315260094|gb|ADT96835.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 214

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 32/240 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +V+  +       V      S  +  +   D                G +    +R 
Sbjct: 6   RVRVVVGDDHPMFRDGVVRALQSSGAIDVVAEADD---------------GTAALAAIRE 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++   +                 L               A  
Sbjct: 51  HRPAVALLDYRMPGMDGAEVAAAVQRGALP--------TRVLLISAHDESAIVYRALADG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         +   ++       ++       +   A       +           L
Sbjct: 103 AAGFLPKESTRNELITAVLDCAKGRDVVAPSLAAGL---AGEIRRRAEPEGPA------L 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  I+ G T   +A  L ++ +TV  ++  +  K     R  A+A A+R  ++
Sbjct: 154 SPREREVLVLIAAGSTIPAMARELFLAPSTVKTHVQRLYEKLGVSDRGAAVAEAMRRKLL 213


>gi|222526625|ref|YP_002571096.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|222450504|gb|ACM54770.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus sp. Y-400-fl]
          Length = 878

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 74/252 (29%), Gaps = 16/252 (6%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWT-MRMYALTEYVGASHFLLVRWDLF 69
           +LN  +         L T +        +D   +     M+ L ++     +        
Sbjct: 626 LLNGNEAAARQAADDLVTLAYRGGVTNAIDWAYAVRAELMFRLKDWAAFDSYARTYQPPQ 685

Query: 70  QEQKLDSIVSSDWPFDLVRCMAL--SEKDKYYNVLQRPTELF-------CPVFHTLPENI 120
           Q       + +      +         +      ++   E           +   L E  
Sbjct: 686 QPLFFPYRLQTLLQVRYLTRQKAWNEGRRLVAEQVRLAREAGYVEYEMELHIVSALLEQK 745

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKS 175
                +         ++ +    + +   +G  +        RL     +A   A   K 
Sbjct: 746 AGNPSVAMNMLGRALEIGKANGYVRIFLEEGEEMRHLLTQIHRLRRDDFVAELLAAFGKP 805

Query: 176 YDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             V      E LT RE+E L  I+EG ++ EIA  L +S  TV  ++  I  K     R 
Sbjct: 806 AQVVQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRV 865

Query: 235 GAIAYAVRNNIV 246
            A   A    ++
Sbjct: 866 KAAGMARELGLL 877


>gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
 gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719]
          Length = 496

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 69/235 (29%), Gaps = 17/235 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    +      +  ++     +       A +E  G     L+         
Sbjct: 263 RKSEERFAKAFRMAP----VPSLVLYGDDLQALDINQAFSETFGYQAEELLGESTVACGL 318

Query: 74  LDSIVSSDWPFDLVR----CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                +      L +                           V     + +         
Sbjct: 319 WQDGGAERLGELLAQSGSVRNVQLRLQHKDRNGLDCLVSAEAVSLNEQDCV--------- 369

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
             +L     R R  + L+     ++     +   L+         +      +  +LT R
Sbjct: 370 LVALLDISDRRRTEMELVHAIETVMQDASWFSRTLIEKLANVRRANAPGTGAELADLTAR 429

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E    I +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 430 EREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|332665835|ref|YP_004448623.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334649|gb|AEE51750.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 213

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 14/218 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPF 84
           +    D +     L+   S    +  L     A  F  ++  +      LD  +      
Sbjct: 4   VTIVDDHVIFAEGLESIFSDAHDIQILARCHNAESFWEVMDHNSIDVVLLDISLPDVSGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L   +     +           +   +                 Y       A +   +
Sbjct: 64  NLCEQIVRKYPN--------TRVIALTMHDEPSLVKKMIKKGAMAYLLKNTTKAELLAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++   +    + +  +       +      +   G    LT RE E L  I+ G T+ 
Sbjct: 116 RTVYSGKKYYNENLMQLLLE-----SEDKPKKNPAMGGRPHLTRREKEVLELIAVGLTTQ 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +IA  L +S   V  + +S++ K  T+     I  A+ 
Sbjct: 171 QIAEKLFVSIKAVEFHRSSLLTKFGTQNTPSMIKEAIE 208


>gi|171912184|ref|ZP_02927654.1| hypothetical protein VspiD_13430 [Verrucomicrobium spinosum DSM
           4136]
          Length = 257

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 63/235 (26%), Gaps = 26/235 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +       V  +    D          + +       L               
Sbjct: 28  TRVLVVDDHPGFRLGVVEMLHDIDGFEVCGEAGDSTTAIASFRDL--------------- 72

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++ + M               T L   +   L   +       
Sbjct: 73  EPDLVVMDISLPGRDGIEVTKMMLAER--------PHTTVLVLTMHDELFYGLRALKAGA 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      + ++   +     +   +    L ++    A+   + +           L+
Sbjct: 125 YGYLRKDDTLTQLADAVRHTANRTHYVSPRLLAQLINKLAHTPTVDEEGKPAIQ---GLS 181

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE+E   W+++G  + +IA  L +S  T+  + A I  K    T    +  A  
Sbjct: 182 DREMEVFHWLAKGLGTRQIATQLCLSIKTIETHRAHIKSKLRMPTAQSIVKLARE 236


>gi|118591588|ref|ZP_01548985.1| probable transcriptional regulator protein, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118435916|gb|EAV42560.1| probable transcriptional regulator protein, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 239

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G+      +   +      + L+   G  +  D +  +G      A          G+ 
Sbjct: 107 EGLIKSVLPMNLRIDLWLGAIRLMLNGGHYLPADAIKYMGFERPAGAAPALQLRKPHGRT 166

Query: 184 ----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE E L  ISEG  +  IA  L +S +T+  +I  I+ K     R+ A A 
Sbjct: 167 KNQFSKLTKRETEVLCLISEGYQNKNIANKLSLSEHTIKLHIHHIISKLGVSNRTEAAAI 226

Query: 240 AVR 242
            ++
Sbjct: 227 FIQ 229


>gi|329848370|ref|ZP_08263398.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843433|gb|EGF93002.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 221

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 29/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +   +++  +DE  + ++    +R+  +              ++                
Sbjct: 3   EPARVLIVEDDEVFSRYMVEALSRAPDIVVAATAASLADGLTKLAV-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       ++  +             +   L   VF      +     
Sbjct: 49  --QPDLVLLDLGLPDGSALPIIEALRAQN--------PKARVLVITVFEDRASVLKTLRA 98

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y        ++   +         +       +  L                    
Sbjct: 99  GADGYVLKDTGPDKLIEWVRATLGGETPVSPRAAGHLLSLL-----REDEPPAEASPPSP 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  I++G +  E A ++GIS  TV  YI  I RK + ++R  A+   + + +
Sbjct: 154 LSAREQQLLELIAQGLSRKEAARVMGISPYTVAEYIQGIYRKLSVRSRGAAVREGIHSGL 213

Query: 246 V 246
           +
Sbjct: 214 I 214


>gi|319941037|ref|ZP_08015373.1| hypothetical protein HMPREF9464_00592 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805394|gb|EFW02196.1| hypothetical protein HMPREF9464_00592 [Sutterella wadsworthensis
           3_1_45B]
          Length = 219

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       ++ L    D  A +       +    +    +                
Sbjct: 4   LIVDDHALVAGALTLLLEDRDPEADVHTAATADAALELVDREGDA--------------D 49

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      +L+  +   +      +L+                +         +
Sbjct: 50  LLILDLSLPGVTGTELMEEIVRRQ-----PMLKILVVSGL---ADQESIMRVLQLGAAGF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              + D   +   +  +   G  I    L E      +                 LT R+
Sbjct: 102 VPKSLDTELLSSAIDFVLKGGVYIPSKLLTESQ-KDGFFTRTAARLKAPESAPPHLTDRQ 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ L  +++G     I   L +S  TV  ++A+I R      R+ A+  A R  
Sbjct: 161 LDVLAQLAKGAPIKRICRELDLSEGTVKTHVAAIYRSFGASNRTEALIAARRAG 214


>gi|311278134|ref|YP_003940365.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
 gi|308747329|gb|ADO47081.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1]
          Length = 217

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D +R+  G+  +    +      +        + A           ++  LT 
Sbjct: 108 GVFRHDDDGSRLIEGVKAVLNGEQTAELSVM--------HPAMYAAEQSSGEAENIPLTE 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  +  G T+ +IA  L IS NTV  ++ ++ RK + K R+ A+++A  N
Sbjct: 160 RECEILNELRCGATNMDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEN 214


>gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 213

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 19/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           V  L    D       L   +               +        L      D ++    
Sbjct: 7   VIRLLLADDHPVVRAGLRAVLDTEPDFRVAG----EAATAEEAVALAAAGGFDVVLMDLQ 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               +     +          R        + +  + +       + Y         +  
Sbjct: 63  FGAGLHGSEATATITAAPDGPRVL--ILTTYDSDADILAAVEAGASGYLLKDAPPQELAA 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +       +              D        LT RE+E L  + EG +
Sbjct: 121 AVRTAAAGRSALAPSVAHRL-------------MDRMRTPAEALTRRELEVLQLVGEGLS 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 168 NLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211


>gi|83717007|ref|YP_438345.1| transcription regulator [Burkholderia thailandensis E264]
 gi|83650832|gb|ABC34896.1| capsula synthesis response regulator transcription regulator
           protein [Burkholderia thailandensis E264]
          Length = 265

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+++++  + E   S +++   R   +A +     +      +      +  +  +L+ 
Sbjct: 30  EQLSVIMLDDHEVVLSGITYQLKRERDIAVLGTFSRSRQLFDYLAQHGPALAHTRPVLLI 89

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                 Q  D          L+R + +        +L     L   +             
Sbjct: 90  DYALGPQDTD-------GIALIRRLCVQ--FPVCPILVVSGHLQPSIVRLALM------A 134

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +  +   +  +    + +         L+      M +           
Sbjct: 135 GARGYIGKDCTLEELVDAIRRVASGEKYVHPSLAERDDLVPPAAIEMRRGDTGRATLASL 194

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE+E L    +G    +IA  L  S  T++    S  RK         
Sbjct: 195 LSPRELEVLRLTLQGFEVGQIAEKLSRSNKTISTQKRSAYRKLGISGDREL 245


>gi|126174706|ref|YP_001050855.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|153001005|ref|YP_001366686.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|125997911|gb|ABN61986.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151365623|gb|ABS08623.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 220

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    T +   A+    D   +    +             
Sbjct: 1   MKLENLNIIIADDHPLFRNALRQALTTAFEHAQWFEADSADALQAVLD------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            VR   +    LD  +           + L        V+             +      
Sbjct: 49  -VRSVDYDLVLLDLQMPGSHG--YSTLIHLRSHYPDLPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      + +    EI  +     +          K
Sbjct: 100 IHYGSSGFIPKSASMETLKEALSAVLFGDIWLPKG--TEIISIDDDAVDKMA------SK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|313806422|gb|EFS44929.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
          Length = 218

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 61/242 (25%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +D      V  +   +D L  +           +                
Sbjct: 1   MLPVRVLLVDDDTLVRRAVRQILEAADDLEVVGEASDGDGAVRQA--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S              +                
Sbjct: 46  --PQADVVLMDLRMPGMSGVEATSRITHSPSSP--------KVVVLTTVTADAAITDAVH 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         I   +  +      +      ++ L         +          
Sbjct: 96  AGASGFLLKASSPDDIVNAVRAVHAGDAFMSPTSTRQL-LEQLRGDAGRRVRGAARKTLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++EG T+D IA  L +S +TV  ++++I  K    +R        R  
Sbjct: 155 ALTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVVSRVRIAVLVERAG 214

Query: 245 IV 246
            +
Sbjct: 215 YL 216


>gi|171320406|ref|ZP_02909442.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171094356|gb|EDT39427.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 214

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 56/227 (24%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +             A           L          +D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLALMDV 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++      L                     L   +   +           + Y      
Sbjct: 64  GMNGMNGITLAGVFHER--------FPGIRVLMLSMHDNIEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASATASPLDRLTPRERDILGA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|50120956|ref|YP_050123.1| transcriptional regulator NarL [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611482|emb|CAG74930.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 216

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  ED      +   P   + + ++I +D  +             G     L        
Sbjct: 1   MINEDAATLLLIDDHPMLRNGVKQLISMDPELQVAGEA-----SHGEQGVELAEQLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +       + Y 
Sbjct: 56  ILLDLNMPGMNGLETLNRLREKSLSGRIVVF--------SVSNHEDDVVNALKNGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGRE 190
               +   +   L        ++       +           +       +D +L T RE
Sbjct: 108 LKDMEPEDLLAALHQAASGKMVLSETLTPILA-------ASLRESRHSSDRDIQLLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  +++G ++  IA  L I+ +TV  ++  +++K   K+R  A  + ++  ++
Sbjct: 161 RDILKLLAQGLSNKVIARKLTITESTVKVHVKHLLKKMKLKSRVEAAVWVLQEKVI 216


>gi|296453988|ref|YP_003661131.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183419|gb|ADH00301.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 217

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 63/214 (29%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFD 85
           R+  +D        +  +    G +  L    D              + D ++       
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTAEVLWTANDGDAAVRRYFETPASRPDVLLIDIQMPC 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  E        +     F   F                Y     DVA +   L 
Sbjct: 62  TSGLDAAREVLATDPAARIL---FLTTFTDQSYIAQAMGLGAKGYLIK-QDVAAVGPALQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  + L ++       A+   S D     +  L  RE E    ++EG  + +
Sbjct: 118 AVMAGQVVLGAEVLGKLTERTPNPADSDDSGDTADSIEGLLGEREREITALVAEGLDNRD 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV N I++I+ K     R+     
Sbjct: 178 IAARLFLSEGTVRNRISAILDKLGLTNRTQLAIL 211


>gi|114047165|ref|YP_737715.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113888607|gb|ABI42658.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 220

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ + I++  +     + +    + +    +    D   +    + +           
Sbjct: 1   MKLENLKIIIADDHPLFRNALRQALSSAFEHTQWYEADSADALQSVLDS----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             +   +    LD  +           + L        V+             +      
Sbjct: 50  --QNVSYDLVLLDLQMPGSHG--YSTLIHLRSHYPELPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  ++  L  +      +           A          D    K
Sbjct: 100 IHYGGSGFIPKSASMETLKEALTAVLFGDIWLPAG--------AEIIPIEDDDTDKMASK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|94500443|ref|ZP_01306975.1| regulatory protein CsgD [Oceanobacter sp. RED65]
 gi|94427478|gb|EAT12456.1| regulatory protein CsgD [Oceanobacter sp. RED65]
          Length = 216

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +  G+  +        R       +L+ + AN  +           L
Sbjct: 99  VSGFFYKGASQNHVSKGIRSILRGELWFSRR------ILSQFMANNRRPPAPEQKPAHNL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T RE + L+  + G  + +IA  L +S +TV  ++ ++ +K     R  A+ +A  
Sbjct: 153 TRRESQILSLSASGAKNADIAAALNVSTHTVKTHMYNLFKKLDVSNRIQAVNWAKE 208


>gi|15839197|ref|NP_299885.1| LuxR/UhpA family transcriptional regulator [Xylella fastidiosa
           9a5c]
 gi|28199850|ref|NP_780164.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182682601|ref|YP_001830761.1| two component LuxR family transcriptional regulator [Xylella
           fastidiosa M23]
 gi|9107833|gb|AAF85405.1|AE004068_1 transcriptional regulator (LuxR/UhpA family) [Xylella fastidiosa
           9a5c]
 gi|28057971|gb|AAO29813.1| transcriptional regulator [Xylella fastidiosa Temecula1]
 gi|182632711|gb|ACB93487.1| two component transcriptional regulator, LuxR family [Xylella
           fastidiosa M23]
 gi|307578884|gb|ADN62853.1| two component LuxR family transcriptional regulator [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 220

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 60/237 (25%), Gaps = 32/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +       +  + +    L  +   +   +   ++  L               
Sbjct: 3   IKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIREL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +          ++    +   P                
Sbjct: 48  RPNVVLCDMHLPGVSGLEITEKLVKGNYGSRVIIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L          S +        L+
Sbjct: 100 SGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVL---------SSLEGGCSPFDVLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E    + +G +   IA  L +S  T+N +   +  K   +        A++  
Sbjct: 151 PRELEIALLLIQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYG 207


>gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
 gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
          Length = 214

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  ++ ++  G+  +      + R  + ++    +Y      +       D ELT 
Sbjct: 102 GVFGAKDNIEKLCRGIEAIARGDNWLPRRLMMQLI---SYYEEKGGAKKEEPQLDIELTR 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L ++  G ++ EIA  L IS +T+ +++ +I RK   K R+ A A+A RN
Sbjct: 159 REIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 213


>gi|297194264|ref|ZP_06911662.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720556|gb|EDY64464.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 218

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 66/220 (30%), Gaps = 11/220 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     +       GA      R        LD  +   +  
Sbjct: 2   RVLVVDDEELVRTALQRLLDSADAVTVAATCDGADALEATRRLAPDVVLLDIDMPGAFGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++R +          V+                         + +   T +       +
Sbjct: 62  DVLRTLRAL---PAPPVVA-----MLTALDRADHVERALRDGASGFLLKTTEPRLFVDAV 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTS 203
            LL   G I          +LA   A +          D   LT RE E LT I+ G ++
Sbjct: 114 RLLAAGGVICTP--PGSAAVLARCTAGVPAPTPPRSSDDLAALTPREHEVLTLIAAGLSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  LG+   TV  +I ++ RK A  +R G  A   R 
Sbjct: 172 TDIATHLGMGVTTVKTHIGALKRKLAVTSRVGLAAVVHRA 211


>gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4]
 gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4]
          Length = 205

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 14/178 (7%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +   +   L +   L    +    +                         
Sbjct: 38  SSGSATVDVALYDSFASSLGKDDRLENLLQ-DPTI--AAVAVYSFTSDPAAVRDSLDAGA 94

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + S +     +  G+  +    R+                       D    K+  L+
Sbjct: 95  HGFLSKSLTAPELVSGIEQIAAGKRV-----------TLTGAGLPIMGPDKWPAKEAGLS 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E ++ I +G ++++IA    +S NTV  Y+ S  RK    TR+ A+A+ + N +
Sbjct: 144 HREAEVVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVATRAQAVAWGIGNGL 201


>gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 216

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 18/201 (8%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
           T    A+          ++          D ++        +  +  +  D     L   
Sbjct: 31  TSGFNAIGAANAGEALRMLDTTTPDIIICDILMPGTNGLQFLEQIRGARSD-----LAGT 85

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             LF          +T      + Y +   D   + + +              +  +  +
Sbjct: 86  PFLFLTALADRSHELTGREAGADDYLTKPIDFDVLILTIRARLN--------LVARVKAI 137

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           +A+ A M    +        L+ RE E L  I +G  + EIA  LG+S +TV++Y+ +I 
Sbjct: 138 SAHPAAMELEGEFIH-----LSRRETEVLKEIGDGHKNGEIARKLGLSEHTVSDYVKAIY 192

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K +  +R+ A   A+R  +V
Sbjct: 193 QKLSVSSRAEATREAIRRGLV 213


>gi|332296491|ref|YP_004438414.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179594|gb|AEE15283.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
          Length = 231

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 66/223 (29%), Gaps = 23/223 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +              + +E +      LV+        LD  +S    
Sbjct: 15  DHALLREGLKFLISQSKEDFEVVGETPSASEAL-----KLVKKLKPDIVILDLSLSDGSG 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D++  +          + Q    L   ++      +       + +   +         
Sbjct: 70  LDIIEPIKK--------ISQNTKILVLSMYQDESVIVQTLKEGASGFIPKSEVSEECIQA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L ++     + +      I L                     L+ RE + L  ++ G ++
Sbjct: 122 LKIISESDDLYVPASYSRIVLKGLL----------SDNASKTLSSREDQVLRLLALGYSA 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  TV  Y   I  K   + RS  + YA+   ++
Sbjct: 172 KEIAQTLQISPKTVQTYRQRITTKLDLRRRSDIVRYAISKGLL 214


>gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 44/241 (18%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  IV+  +       V+    R   +  +                    GA    +  
Sbjct: 5   ERTRIVIVDDHPVVHDGVAAQLQRYPDMVVVGHAGT---------------GAEAVTVCA 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +      LD  +      D+V         +     +       P            A 
Sbjct: 50  AEHPDVVLLDLRLPDCLAADVVPA-----LHRVSPDSRILLFTAFP---EHVAVAPTLAA 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                         IR  +  +   G                                  
Sbjct: 102 GACGILVKHAGAIAIRDAIRSVVRTGAF---------------------RTGTPASSTAP 140

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T RE + L  ++ G T+ EI   L +S NTV  Y+ ++M+K A + R+  IA A    +
Sbjct: 141 VTAREYDVLRLVAAGHTNPEIGTELNLSINTVKTYLWTVMQKLAARNRAQLIANARGQGL 200

Query: 246 V 246
           +
Sbjct: 201 L 201


>gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 203

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 81/217 (37%), Gaps = 19/217 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              D    +I +   +        + E  G      +  ++ +    D ++     + LV
Sbjct: 2   LVDDDPNLVILVSDYLELRGYQVTIAEN-GQKALEKLEEEVPELIICDIMMPEMDGYTLV 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +  + +  +  V+    +          + +       + Y    FD   +   +   
Sbjct: 61  KLIRENSQFGWIPVIFLSAKGQS------EDRVKGLNTGADVYMVKPFDPEELMAQV--- 111

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEI 206
                      L +   L  Y+ ++  +      +   ELT  E++ +  +++GK + EI
Sbjct: 112 --------ESSLRQTERLTRYRKSVIGTSPKIKVRSGVELTPTELKVVELVAKGKGNREI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + I+ +S+ T+ ++I++++ KT    R+    +A+ +
Sbjct: 164 SKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALES 200


>gi|284047095|ref|YP_003397435.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951316|gb|ADB54060.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 222

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 23/239 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+    ++ ++L  +D    S +  +   S+ +  +   D                G + 
Sbjct: 1   MSAAGGRIRVLLVDDDALVRSGLRMMLAGSERIEVVGEADD---------------GRAV 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
              V         +D  +           +                 L    F      +
Sbjct: 46  LAAVDRHRPDVVLMDIRMPQLDGIAATALLRAQPSPPE--------VLVLTTFDADELVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +         I   + L+     ++      ++  L A  ++         
Sbjct: 98  RALRAGAAGFLLKDTPPPEIVRAVELVAAGEAMLSPVVTRKLIALVAGDSDAVAHQQQAR 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +   L+ RE E    +  G  + +IA  L +S  TV  +++ ++ K     R      
Sbjct: 158 ERLATLSAREHEVALAVGRGCANADIAAELHMSVATVKAHVSRLLAKLEVDNRVQIALL 216


>gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 217

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 58/222 (26%), Gaps = 19/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +          E             L      D ++      
Sbjct: 13  RLLLADDHPVVRAGLRAVLDTEPGFRVAGEA----ATAEEAVALAVAGGFDVVLMDLQFG 68

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +     +          R        + +  + +       + Y         +   +
Sbjct: 69  AGMHGAEATATITAAPDGPRVL--ILTTYDSDADILAAVEAGASGYLLKDAPPQELAAAV 126

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +       +              D        LT RE+E L  + EG ++ 
Sbjct: 127 RTAAAGRSALAPSVAHRL-------------MDRMRTPAEALTRRELEVLQLVGEGLSNL 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 174 QISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 215


>gi|326384977|ref|ZP_08206650.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326196268|gb|EGD53469.1| two component transcriptional regulator, LuxR family protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 203

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 58/222 (26%), Gaps = 25/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +     +  + +   G       R    Q   LD  +      
Sbjct: 6   LLLADDQALVRGALAALLDLEPDLSVVAQVGRGDEVVDAARASGAQVCLLDIEMPGADGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +           L     L    F              + +       A +   +
Sbjct: 66  EAAARITGE--------LPGVRSLIVTTFGRPGYLRRAVDAGASGFVVKDTPAAELADAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R+I      E                     D  LT RE E L     G T  
Sbjct: 118 RRVHAGLRVIDPTLATE----------------SLTSGDNPLTPRETEVLAAALSGATVA 161

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  + +S  TV N+++S + KT   TR+ A   A     +
Sbjct: 162 TIAAQVHLSAGTVRNHLSSAIGKTGASTRAEAARIARDRGWI 203


>gi|296104643|ref|YP_003614789.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059102|gb|ADF63840.1| two component LuxR family transcriptional regulator [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 210

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 59/233 (25%), Gaps = 34/233 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q   ++  +     S +++         +   +        ++               
Sbjct: 1   MGQNYALVVDDHPLVASGIANFLITHCRFKQASVVTNEDDCYRQIR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                       +V   W         L E  + Y  ++                    A
Sbjct: 47  -----DNGPPRLLVIDFWLSSGTALKLLKEVKQLYPQVRLLVVSGD---DNNDIWQKVHA 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   +         +  L                             +      F
Sbjct: 99  AGGHGFVLKSEPPEMFSRAVFALTDNLTWFPEGN------------EFSVESNNEKLSKF 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT R+++ L  I  G  +  IA  L IS  TV  +I++I++K    +R  AI
Sbjct: 147 NLTPRQIDVLNMIMRGLPNKRIAAQLSISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|157371140|ref|YP_001479129.1| transcriptional regulator NarL [Serratia proteamaculans 568]
 gi|157322904|gb|ABV42001.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 216

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 31/235 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +     + V  L      L  +                    G     L     
Sbjct: 8   TILLIDDHPMLRNGVKQLIGMDSRLQVIAEAGN---------------GEQGVALAEEHD 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + +  + ++       V          V +   + ++      +
Sbjct: 53  PDLILLDLNMPGINGLETLDRLRMTALSGRIVVF--------SVSNHEDDVVSALKRGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LT 187
            Y     +   +   L        ++       +           +       +D + LT
Sbjct: 105 GYLLKDMEPEELLKALHQAAAGQMVLSEALTPILA-------ASLRENRPSAERDIQQLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  + ++
Sbjct: 158 PRERDILKLIAQGLPNKMIARKLTITESTVKVHVKHLLKKMKLKSRVEAAVWVLQ 212


>gi|333023482|ref|ZP_08451546.1| putative two-component response regulator [Streptomyces sp. Tu6071]
 gi|332743334|gb|EGJ73775.1| putative two-component response regulator [Streptomyces sp. Tu6071]
          Length = 227

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  ++       + +    + +  +       +       L+              
Sbjct: 17  LTVVVADDERLVRESFAAILDAEEGIQVLTTAGDGAACVEAARRLS-------------- 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++ R +A +                   F              
Sbjct: 63  -PDVVLADVRMPLLDGVEVARALANTPIGVV----------LITAFDEDTVLRAALRLGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   +        ++       +           +       +   L+
Sbjct: 112 SGFLLKDASPALLVEAVRAAARGDALVSPSLTLRL----------LRGLAPQDPEPTVLS 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +++G+T+ EI   LG+S ++V  Y+  +  K   + R    A+A    +V
Sbjct: 162 AREQEITEHVAQGRTNQEIGTALGLSLSSVKTYLDRVRTKLGLRNRVEIAAWAWERGLV 220


>gi|294665170|ref|ZP_06730471.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605083|gb|EFF48433.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 236

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 16/223 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +   +D    +  +   +     +  +     G +   +   +      +D ++    
Sbjct: 3   TRIVVAADRTILVEGMVALLQKVPGIEVVGHAEDGLACLQIAARERPDIVLVDVLLPGLN 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             DL R +     +           +         +           Y + T   A +  
Sbjct: 63  GIDLTRRLMQRSPN--------SRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLR 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      I       +           +           LT RE E +   SEG +
Sbjct: 115 AIQCVIQDQTYISPQMSRSLI-------AGLRRAAKADSAYTRLTSREREIVQLYSEGLS 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 168 TRQIANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 210

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 66/244 (27%), Gaps = 34/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              + + +V+  +    T  V  L      +  +                     A+   
Sbjct: 1   MVSEDIRLVVVDDHPVVTDGVRLLLRDDPAIRVVGSAADA---------------ATAVR 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LV         LD  +      ++V  +                 L    +         
Sbjct: 46  LVGRAQPHVVLLDLRLPDAMASEIVAPLRE--------AAPAARILVFTAYRDHAALQAT 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                +           +   +        I                             
Sbjct: 98  LDAGVDGCLLKDAGATDLVSAVHQAAHGIPIFDPR-----------VGERAAPRMRSRLH 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT RE + L   + G+T+ EIA  LG++R+TV  Y+ + MRK   + R   IA A +
Sbjct: 147 DTGLTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQ 206

Query: 243 NNIV 246
           + ++
Sbjct: 207 SGLL 210


>gi|317492828|ref|ZP_07951252.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918950|gb|EFV40285.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 73/246 (29%), Gaps = 34/246 (13%)

Query: 1   MNFEI---QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG 57
           MN E+    Q  I+L  +     S V  L +    L  +                    G
Sbjct: 1   MNSELAPEDQYTIILIDDHPMLRSGVKQLISLEPQLKVIGEASS---------------G 45

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
                L          LD  +      + +  +                 +   V +   
Sbjct: 46  QQGIELAEKLDPDLILLDLNMPGMNGLETLDQLRTRTLS--------GRVVVFSVSNHED 97

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + I+      + Y     +   +   L        ++       +           +   
Sbjct: 98  DVISALKRGADGYLLKDMEPEDLLRSLHQAAAGQVVLSEALTPVLA-------ASLRESR 150

Query: 178 VHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               +D + LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A
Sbjct: 151 PSSERDVQQLTPRECDILKLIAQGLPNKMIARKLMITESTVKVHVKHLLKKMKLKSRVEA 210

Query: 237 IAYAVR 242
             + ++
Sbjct: 211 AVWVLQ 216


>gi|300903191|ref|ZP_07121123.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301301692|ref|ZP_07207827.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300404806|gb|EFJ88344.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300843189|gb|EFK70949.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256366|gb|EFU36334.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 215

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 6   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 51  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++           L  I                +     
Sbjct: 103 AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSKTLNYI---------KSNKCSTNSSTIT 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 154 VLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 213

Query: 245 IV 246
           ++
Sbjct: 214 LI 215


>gi|255320308|ref|ZP_05361493.1| two component transcriptional regulator, LuxR family [Acinetobacter
           radioresistens SK82]
 gi|262380505|ref|ZP_06073659.1| response regulator [Acinetobacter radioresistens SH164]
 gi|255302747|gb|EET81979.1| two component transcriptional regulator, LuxR family [Acinetobacter
           radioresistens SK82]
 gi|262297951|gb|EEY85866.1| response regulator [Acinetobacter radioresistens SH164]
          Length = 216

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 68/236 (28%), Gaps = 28/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+   +E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQISETAAVNEFYERLEKGSE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +  +        Y  +             L       A   
Sbjct: 48  -PDLVLLDLNLPGASGFSALVHVRAQ-----YPSIPIIVVS---AHEELSIIQRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    +                   +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRQVLEGEIWLPPNLPTNVSF-----DPRATDETELAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+  A++ 
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV-LAIKA 208


>gi|182416057|ref|YP_001821123.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177843271|gb|ACB77523.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 246

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 59/220 (26%), Gaps = 9/220 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D  A    L   +     +  + E         L          LD  +     +
Sbjct: 7   VLVIDDHPATREGLRAAIDAQRDLRVVGEAATWQEARRLAAELRPDVMVLDLNLPDGNGW 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            LV  +  ++      VL                           Y      +  I   +
Sbjct: 67  TLVEQLKAADALPPTLVLSVC--------DEQLYARRLLRAGAGGYLMKDEPMETILRAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     I        +   A          + H G   EL+ RE++    +  G  + 
Sbjct: 119 REVREGRIIASATITNSLLSEALGMREDEPPAEAHDGNLAELSDRELQIFALLGRGLRNK 178

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EIA  L +S  TV  Y   +M K   +T    I +  R N
Sbjct: 179 EIAARLRLSEKTVATYKVRLMSKLGVRTTPALIEHYRRWN 218


>gi|146305124|ref|YP_001185589.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145573325|gb|ABP82857.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 210

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 23/229 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSI 77
            T+    +    D       +   +        + E   GA  F L++        +D  
Sbjct: 1   MTAATIRIALIDDHALVREGIRALLEVLPHFQVVGEAGSGAEAFDLLQRTPVDILLMDVG 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L R +        Y  ++         +       +  A   + Y       
Sbjct: 61  LRDINGLELTRQLRE-----RYPAIKVLMLSM---YDNQEYVSSSLAVGASGYVLKEAPS 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +   G     D   ++                    + ELT RE E L  +
Sbjct: 113 REIVAAIEAIAAGGSFYSGDIARKLV--------------KPAPSEDELTPREREVLLML 158

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G  +  +A  L IS  TV  +  SI RK A    +  + +A+ +  V
Sbjct: 159 AQGLNNKVMARTLQISVRTVETHRLSIRRKLAIDKPADLLKHALAHGWV 207


>gi|300722891|ref|YP_003712186.1| response regulator (activator) in two-component regulatory system
           wtih UhpB [Xenorhabdus nematophila ATCC 19061]
 gi|297629403|emb|CBJ90004.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 205

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 27/220 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ L+  +       +  E         +         LD  + 
Sbjct: 4   VALVDDHVVVRSGFAQLLNLESDIEVVGEFSSCAEARQG-----LPGSGATVCILDISMK 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L++ +                 +   V  +              Y S       
Sbjct: 59  DESGLSLLQDLPSGITC-----------IMLSVHDSATMVENALKAGARGYLSKRCSPDE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +      G  +  D + ++            S   +      LT RE +    ++ 
Sbjct: 108 LLQAVRTTANNGCYLTPDIVHKLT-----------SSKNNPTALDHLTKRERQVGEMLAR 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G     +A  LG+S  TV+ + A+ M K       G   Y
Sbjct: 157 GMDVKAVAAELGLSHKTVHVHRANAMSKLGVVNNVGLANY 196


>gi|228984929|ref|ZP_04145099.1| Response regulator [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228774879|gb|EEM23275.1| Response regulator [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 212

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICGET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|148546374|ref|YP_001266476.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148510432|gb|ABQ77292.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
          Length = 236

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 19/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D      + +  L E  G          +    L ++   D +V       L    
Sbjct: 33  VLIVDDHPVIRLAVRMLMERHGYDVVAETDNGVAALQLTRQHLPDIVVLDIGIPKLDGLE 92

Query: 91  ALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            ++    +    +        P   +    +         Y     ++  +   +  +  
Sbjct: 93  VIARMATFSPGSKVLVLTSQAPGNFS----MRCMQAGAAGYVCKQQELTELLSAIKAVLS 148

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                    L          A+  +           L+ RE+  L  ++ G+++ EIA  
Sbjct: 149 GYSYFPNQALH---------ASRGRGAGSETDMVNRLSAREMTVLQQLARGRSNKEIADS 199

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV+ Y + ++ K   ++    I  A R  +
Sbjct: 200 MYLSNKTVSTYKSRLLLKLNARSLVDLIELAQRQGL 235


>gi|269795973|ref|YP_003315428.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098158|gb|ACZ22594.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 247

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/256 (8%), Positives = 62/256 (24%), Gaps = 35/256 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  ++  +D    + +  +   +  +  +  +         + A                
Sbjct: 5   IRTLIVDDDALVRAGLRLMLAGAPDIEVVGEVADGSLVAEAVAA---------------H 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT-----------ELFCPVFHTL 116
                 +D  +         + +         +                  +    F   
Sbjct: 50  HPDIVLMDIRMPVMDGIAATQALRQGAAAAGGSSGADGGDDESAQDSAPQVIVLTTFGGD 109

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-------- 168
              +       + Y         I   +        ++    +  +   A          
Sbjct: 110 DTILGALQAGASGYLLKHTPPEEIVDAVRRTAHGDPVLSPAVMKVLIDRAMAGAPLAPSD 169

Query: 169 -QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                         +   L+ RE +  + +++G ++ EIA  + +S  TV ++I+S + K
Sbjct: 170 TAPAAPSRSAQAVERLSVLSNRERDVASAVAQGLSNTEIAEQMYLSMGTVKSHISSALTK 229

Query: 228 TATKTRSGAIAYAVRN 243
                R      A   
Sbjct: 230 LDFSNRIQLALLAYEA 245


>gi|26987826|ref|NP_743251.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24982525|gb|AAN66715.1|AE016299_11 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
 gi|313497456|gb|ADR58822.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 207

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 19/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D      + +  L E  G          +    L ++   D +V       L    
Sbjct: 4   VLIVDDHPVIRLAVRMLMERHGYDVVAETDNGVAALQLTRQHLPDIVVLDIGIPKLDGLE 63

Query: 91  ALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            ++    +    +        P   +    +         Y     ++  +   +  +  
Sbjct: 64  VIARMATFSPGSKVLVLTSQAPGNFS----MRCMQAGAAGYVCKQQELTELLSAIKAVLS 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                    L          A+  +           L+ RE+  L  ++ G+++ EIA  
Sbjct: 120 GYSYFPNQALH---------ASRGRGAGSETDMVNRLSAREMTVLQQLARGRSNKEIADS 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV+ Y + ++ K   ++    I  A R  +
Sbjct: 171 MYLSNKTVSTYKSRLLLKLNARSLVDLIELAQRQGL 206


>gi|255323699|ref|ZP_05364827.1| two component transcriptional regulator, LuxR family
           [Corynebacterium tuberculostearicum SK141]
 gi|255299189|gb|EET78478.1| two component transcriptional regulator, LuxR family
           [Corynebacterium tuberculostearicum SK141]
          Length = 221

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 70/243 (28%), Gaps = 26/243 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + +VL  ++E   S +  L + +  +  +                    G     
Sbjct: 1   MMADALRVVLVDDEELVRSGLRLLLSNAPDIEVVAEASN---------------GRDAVA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            V         +D  +        V  +           +     +    F T    +  
Sbjct: 46  TVLDAQPDVVLMDIRMPVMDGIAAVEKILS---------VHAVPIIMLTAFDTDSFILRA 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHW 180
                  +   +     +   +        ++    + ++  + +   +  +S       
Sbjct: 97  LRAGAAGFLLKSTPPESLMAAVRAAAAGQPLLSPQVVDKLVGMQSPALSDAQSHHTRTAR 156

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L+ RE E    +++G  + +IA  L +S  TV +++  I++K    +R      A
Sbjct: 157 TRLATLSSREREIAGLVAQGLNNQDIADQLVVSLATVKSHMQHILKKIGGTSRVHIAIMA 216

Query: 241 VRN 243
           +  
Sbjct: 217 LEA 219


>gi|237846560|gb|ACR22888.1| SpsR [Serratia plymuthica]
          Length = 248

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 32/191 (16%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT------------LPENITPPAGMDNRYCS 132
           +  +    +       VL   +    P                   ++     + N Y  
Sbjct: 52  EWFKFYTENNYQFIDPVLITASRRITPFSWDENLMIDPGLKLPRIFDMARNYNIVNGYTF 111

Query: 133 LTFDVARIRIGLMLLFP--------KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           +  D     + L ++                +D   ++ +L     +             
Sbjct: 112 VLHDHNHNLVVLSIMIDKHCDDNIEGEIAANQD---KLQMLLITTHDKTTELYKEINSPN 168

Query: 185 ---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                      + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        
Sbjct: 169 YFDKMNNKEIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKH 228

Query: 236 AIAYAVRNNIV 246
           AI   V   ++
Sbjct: 229 AIRLGVELQLI 239


>gi|168492022|ref|ZP_02716165.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183573661|gb|EDT94189.1| response regulator [Streptococcus pneumoniae CDC0288-04]
          Length = 199

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D + +++ L         + A     G     L+  +      LD  
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTLQS--DVESVLQA---KNGQEAIQLLEKESVDIAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++  +   + +    V+          F              + Y      +
Sbjct: 56  MPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   L  +    +    + +  +                       LT +E+  L  I
Sbjct: 108 ADLMQTLYTVLEGRKEYSPELMEVMMT-----------------HPNPLTEQEIAVLKGI 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  T+ NY+ +I+ K     R+ A   A  +  +
Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|66047845|ref|YP_237686.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|289676179|ref|ZP_06497069.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
 gi|302185934|ref|ZP_07262607.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|63258552|gb|AAY39648.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|330938450|gb|EGH42060.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330955086|gb|EGH55346.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
 gi|330970833|gb|EGH70899.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 209

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLARDLQVVGEASNGEQLLETLRHVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +           +     L   + +             
Sbjct: 48  -CEVVLLDISMPGVNGLEAIPRILAL---TNPPAI-----LVLSMHNEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPDLADRMVFEVGLTDSRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKMKLNSLADLVKYAMEHKLL 209


>gi|300087394|ref|YP_003757916.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527127|gb|ADJ25595.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 270

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/251 (9%), Positives = 71/251 (28%), Gaps = 30/251 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + L  + E     +  L      +  +                 +          
Sbjct: 41  LKEIRVFLVDDHEVTRRGIKTLFVNEPDILVV-GESDGKDLQSLHDDFIKT--------- 90

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F++   +     +           +F   + +         
Sbjct: 91  ---KPDLVLLDIRLDGKDGFEISLELKNLHYE--------TKIIFLTGYESELYASEALH 139

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN---------MFKS 175
              + + +       I   + ++   G +   D L +   + ++  +           + 
Sbjct: 140 YHADGFITKESSKEFICTSIRMVALGGSVWRSDILHKALRMISHANSGSNDSEPSKHPRG 199

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                    +LT RE+  L  + +G ++ +I  +L  +       + ++  K     R+ 
Sbjct: 200 LTPADEIKAQLTSRELRVLIALGQGASNKDIGKLLDETEMVAKKTVHNVFNKIGVSNRTQ 259

Query: 236 AIAYAVRNNIV 246
           A  +A +  +V
Sbjct: 260 AALFAKQVGLV 270


>gi|302337080|ref|YP_003802286.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634265|gb|ADK79692.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 223

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 59/229 (25%), Gaps = 18/229 (7%)

Query: 16  DEQRTSFVSHLPTRSDLL-ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           D  R   V       + L   +  L   +       +     G     L          +
Sbjct: 4   DTVRVLLVDDQLLFLESLKIVLENLSEEIEVCGLASS-----GHEAISLAATCRPDVILM 58

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +    +     D           +    F    +         N Y    
Sbjct: 59  DVSMPEMDGIEASARIKAERPD--------VNIIMLTTFEEKGKVQEAIKLGINGYLLKN 110

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ----ANMFKSYDVHWGKDFELTGRE 190
                +   ++L    G  +  +    +      +        +  D        LT RE
Sbjct: 111 LKPELLIQYILLSAEGGVFLSTEVADRLCRQGGDEKAGDEQAERCLDEEDSSYKFLTRRE 170

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E L +++   T+ EIA  + +   T+ NYI+ I  K     R   I  
Sbjct: 171 KEVLKYLAMDMTNMEIAEKIHVGYQTIRNYISVIYSKLNVSNRMEVIKK 219


>gi|254383319|ref|ZP_04998671.1| AbsA2 [Streptomyces sp. Mg1]
 gi|194342216|gb|EDX23182.1| AbsA2 [Streptomyces sp. Mg1]
          Length = 219

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 59/238 (24%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  ++    + +  + T +  +  +                    G     L R  
Sbjct: 6   VRVVIADDEPLIRAGIRMILTSAPDIEVVAEAAN---------------GREAVELARAH 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +                 L    F      +       
Sbjct: 51  APDVMLLDIQMPVMDGLTALGELGR--------AAPEVRALILTTFGEKENVLRALGQGG 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +         +       +              +    +  EL+
Sbjct: 103 AGFLLKDSAPGELIGAVRAAAAGDAYLSPAATRHVVD-QLASGQAAGRGEAARRRVAELS 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   L  + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 162 ERERGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLGCENRVQAALLARDAGL 219


>gi|317482242|ref|ZP_07941263.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916258|gb|EFV37659.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 217

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 62/214 (28%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFD 85
           R+  +D        +  +    G +  L    D              + D ++       
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTAEVLWTANDGDAAVRRYFETPASRPDVLLIDIQMPG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  E        +     F   F                Y     DVA     L 
Sbjct: 62  TSGLDAAREILATDPAARIL---FLTTFADQSYIAQAMGLGAKGYLIK-QDVAAAGPALQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  + L ++       A+   S D     +  L  RE E    ++EG  + +
Sbjct: 118 AVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTADSIEGLLGEREREITALVAEGLDNRD 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV N I++I+ K     R+     
Sbjct: 178 IAARLFLSEGTVRNRISAILDKLGLTNRTQLAIL 211


>gi|190404427|ref|YP_001961058.1| rcorf83 [Agrobacterium rhizogenes]
 gi|158322223|gb|ABW33640.1| rcorf83 [Agrobacterium rhizogenes]
          Length = 224

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 22/226 (9%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
                      + +     G   F  +     Q + L+    + +P          +  +
Sbjct: 4   AAHDERMIKGALKSFVNSHGFERFAYL-----QTEGLEIRTFNSYPEGWQDIYLGGQYSR 58

Query: 98  YYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              V+          +                  +     G+ +             + L
Sbjct: 59  IDPVITEAKRRMEMFYWTADDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMML 118

Query: 145 MLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
                + ++    +L  +     +LA +      +          L+ RE  CL W ++G
Sbjct: 119 TFASSEKKVEKAKLLDAQKAVRTVLAIHYRLKIIASTTIIAPKRLLSPREAMCLMWAAKG 178

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           K++ E A++ GI+  TV +Y+     K    T    +A A  + +V
Sbjct: 179 KSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAKDHGLV 224


>gi|76811819|ref|YP_332880.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|76581272|gb|ABA50747.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 363

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 32/250 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           +   Q +  ++   D +R   +  L  + D   R    +    W  +   L +       
Sbjct: 79  DKRRQNMRFLVLNSDAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLI 134

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           ++                     D      L +                    +      
Sbjct: 135 VV---------------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQA 173

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                     S T     I   L ++   G  +    L      A  +    ++      
Sbjct: 174 LFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLP 233

Query: 182 KDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A
Sbjct: 234 RRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAA 293

Query: 237 IAYAVRNNIV 246
           +  A+ N  +
Sbjct: 294 V--AIYNGWL 301


>gi|330505256|ref|YP_004382125.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328919542|gb|AEB60373.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 209

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +    E   G     ++R        LD  +     
Sbjct: 3   RVLVAEDHTIVREGIKQLIGMARDLEVAGEACNGEQLIEVLRRTPCDVVLLDISMPGVNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +           +     L   +                 Y +   D A +   
Sbjct: 63  LEAIPRIRAL---TEAPAI-----LVLSMHDEAQMAARALKAGAAGYATKDSDPALLITA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   GR I       +        +             +L+ RE      +  G+  
Sbjct: 115 IRKVAGGGRYIDPALADRMVFEVGLTDSR--------PPHAQLSEREFSVFERLVRGEGV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA+ L +S  TV+ + A +M+K    + +  + YA+ + +V
Sbjct: 167 NDIALHLAVSNKTVSTHKARLMQKLGAHSVADLVRYAMEHRLV 209


>gi|257484713|ref|ZP_05638754.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 214

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 66/235 (28%), Gaps = 25/235 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +     + V  L       A +         +     L                   
Sbjct: 1   MVDDHSLIRAGVRALVAEMPGYAIIGETADGAQLSSLAQRL---------------KPDI 45

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  + S    + +  +          V      L   +       +         Y 
Sbjct: 46  ILLDIWMKSVDGLEALEHLLK--------VQPHCKVLILSMHTDPDMIMRALDIGARGYL 97

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   +   L  L    R +       +   A       ++        + LT R++
Sbjct: 98  LKDTTATELEQALEALRNNERYLSPAIAHTVIERALRGTRSDRAQAAKER--YHLTARQL 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  I  GK++ EIA  LG+S  T+  + + +M++      +G + + VR  I+
Sbjct: 156 EILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRLQIFDVAGLVLFCVRERII 210


>gi|220920881|ref|YP_002496182.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945487|gb|ACL55879.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 223

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +       V  L   +  +  +                    G+    L+   
Sbjct: 9   VRVLLADDHPVFLGGVRALLEDAADVTIVGEATS---------------GSRALRLITET 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       + + +A          +     +   V               
Sbjct: 54  RPDVAVLDVAMPEMHGIAVAQHLAAE--------VSPTRVVILSVHEDRTYVREALIAGV 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +   G  I             + +               LT
Sbjct: 106 RGYVLKRSAGENLVQAVRAVSGSGLYIDPAIADR------FVSTSDIMPRTGARTVPMLT 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +  I+ G T+ E+A  LG++  +V  Y      K   +TR+  + YA+    
Sbjct: 160 DREREVVRLIALGFTNKEVASKLGVTAKSVETYKMRATEKLDIRTRAKIVQYAMLQGW 217


>gi|32441931|gb|AAO38761.1| SwrR [Serratia liquefaciens]
          Length = 248

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 26/188 (13%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP------------ENITPPAGMDNRYCS 132
           +       +       VL   +    P                   ++     + N Y  
Sbjct: 52  EWFEFYIKNNYQFIDPVLITASHRITPFTWDKDLEIGAGLKLPKIFDMAKNYNIINGYTF 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           +  D     + L ++  K      ++       EI +L         +         +  
Sbjct: 112 VLHDHHHNLVVLSIMLDKHCDADVEQQIDNNKAEIQMLLITMHGKMTTLYQEMSTPADFE 171

Query: 187 --------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   + RE E + W S GK+  EIA+ILGI   TV  +I + ++K        AI 
Sbjct: 172 KMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIR 231

Query: 239 YAVRNNIV 246
             V   ++
Sbjct: 232 LGVELQLI 239


>gi|226304720|ref|YP_002764678.1| NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183835|dbj|BAH31939.1| probable NarL family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 243

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  + E     ++ L  +      +    C    +  +                  
Sbjct: 3   IGIYLVDDHEIVRRGLADLLNQVSGFNVVGEASCVREASDGI---------------PEC 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L R +A +              L    +      +       
Sbjct: 48  RPDVVVMDVRLPDGNGVELCRELAST--------CPEAATLMLTSYSDDDALLDALIAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +     ++    +  +           +S          LT
Sbjct: 100 RGFVLKNIRGHDLVSAIRTVATGKSLLNTQAVVGL-------VRRIRSEQESGTAAALLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E+     I +G ++ EI+    +S  TV NY++ I+ K   + R+ A   A + 
Sbjct: 153 DQELLIFELIGKGLSNREISTHAELSEKTVKNYVSRILEKLGLERRTQAAVLATKL 208


>gi|254476578|ref|ZP_05089964.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
 gi|214030821|gb|EEB71656.1| DNA-binding response regulator, LuxR family [Ruegeria sp. R11]
          Length = 244

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 59/221 (26%), Gaps = 22/221 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +       +L + +      L    +     LD  +   
Sbjct: 35  IVEDHPLFCDALAMTLRATIGIGSIATAASLEDAMDF----LALGPVPDVIVLDLHLPDV 90

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +  +       +              +    T        +           
Sbjct: 91  QGLDGLVRLRNA---TDAPI---LVVSSMADNRVIS---TAIHAGAAGFVPKHSQRDVYN 141

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                +      +                      +    +   LT ++   L  I  GK
Sbjct: 142 NAFDAMRRGIAFVPP---------GYDLLPHDSEANDAADRLATLTNQQARILQLICAGK 192

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A  
Sbjct: 193 LNKQIAFDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKE 233


>gi|53718880|ref|YP_107866.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
 gi|52209294|emb|CAH35239.1| putative transcriptional regulator [Burkholderia pseudomallei
           K96243]
          Length = 302

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 72/250 (28%), Gaps = 32/250 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           +   Q +  ++   D +R   +  L  + D   R    +    W  +   L +       
Sbjct: 18  DKRRQNMRFLVLNSDAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLI 73

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           ++                     D      L +                    +      
Sbjct: 74  VV---------------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQA 112

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                     S T     I   L ++   G  +    L      A  +    ++      
Sbjct: 113 LFEAGVLGVISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLP 172

Query: 182 KDFE-----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A
Sbjct: 173 RRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAA 232

Query: 237 IAYAVRNNIV 246
           +  A+ N  +
Sbjct: 233 V--AIYNGWL 240


>gi|300787344|ref|YP_003767635.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796858|gb|ADJ47233.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 196

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 18/207 (8%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPFDLVRCMALSEKD 96
           +   +     +  + +  G+    L R          LD  +      +L R +      
Sbjct: 1   MADLLDEDEHLTVIGQA-GSVSQALARIPALNPDVAVLDVRLPDGNGIELARELRSKL-- 57

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                L+            + + +       + +         +   +  +     +   
Sbjct: 58  ---PELKCLMLTSYTDEQAMLDAVM---AGASGFVIKDIKGMDLVSAVREVGAGKSL--- 108

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                    AA      +      G   +L+ +E + L  I EG T+ +I+  + ++  T
Sbjct: 109 ----LDAHAAAALMAKLRDSQAKKGPLADLSDQEKKLLELIGEGLTNRQISERMFLAEKT 164

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRN 243
           V NY++ ++ K   + R+ A   A   
Sbjct: 165 VKNYVSRLLTKLGMERRTQAAVLATEL 191


>gi|317127262|ref|YP_004093544.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472210|gb|ADU28813.1| two component transcriptional regulator, LuxR family [Bacillus
           cellulosilyticus DSM 2522]
          Length = 222

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 15/226 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D+ +       P   D    ++    ++             G     LV         LD
Sbjct: 3   DKLKVVIADDHPIVRDGFKVLLSTTDSIEVVGTAQN-----GVEVVELVTQLHPDVVLLD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             + +    + +  + +          +            + + ++      N      +
Sbjct: 58  MYMPNKNGLEALADIKIKH-----PETKVLMISSMINDDVVIDCLSL---GANGVLLKDW 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              +I   +        II      ++        +      ++V       L  RE E 
Sbjct: 110 PTDKIIHAMKESVAGQMIIPECYSTKLIGAWKKQNKPQHKDWHEVINKLPISLYEREKEI 169

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L  I +GK + EIA  L +S  T+ NY +SI +K     R   + Y
Sbjct: 170 LAKIMDGKKNSEIARELYLSIGTIKNYTSSIYKKIGVSKRKELVEY 215


>gi|157368315|ref|YP_001476304.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157320079|gb|ABV39176.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 248

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 26/190 (13%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT------------LPENITPPAGMDNRY 130
             +       +       VL   +    P                   ++     + N Y
Sbjct: 50  GTEWFEFYTENNYQFIDPVLITASRRITPFSWDENIMIDPGLKLPRIFDMAKNYNVVNGY 109

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGKDF- 184
             +  D     + L ++  K      +        ++ +L     +   ++         
Sbjct: 110 TFVLHDHNHNLVVLSIMIDKNCDYNIEERIIANQDKLQMLLITTHDKLTAFYKEINSPTY 169

Query: 185 --------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                     + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        A
Sbjct: 170 FDKMNNKGIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKHA 229

Query: 237 IAYAVRNNIV 246
           I   V   ++
Sbjct: 230 IRLGVELQLI 239


>gi|296162419|ref|ZP_06845211.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
 gi|295887338|gb|EFG67164.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1]
          Length = 333

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 61/246 (24%), Gaps = 29/246 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
                 + +++ ++           +      +G   F           K   +++S   
Sbjct: 83  PAARRAAPVISPLVRFGSAQDRIEFVRQRIRQLGFDSFSYSATRTSAHHKTMFVLTSYES 142

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRY--- 130
              +         +    +   +    P      +                G+ +     
Sbjct: 143 QSWLTRYFRERYFELDPRVALASPTGMPFLWNTADMRADLPRAQMRSERLGGLIDMLEAT 202

Query: 131 -------CSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS------ 175
                    +      +   L         R +    + E  + A        +      
Sbjct: 203 GRKSGILTQMPLPEPELSASLCFNSETGNPRWMTESIVAETLMFAHMIHEFIWTHAKSVI 262

Query: 176 -YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  +   L+  +   L  + +G+   EIA  LG+S + V+ ++  + +    + R 
Sbjct: 263 GIAPAQQQRVTLSELQHAVLRAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRV 322

Query: 235 GAIAYA 240
             I  A
Sbjct: 323 QLINVA 328


>gi|225155200|ref|ZP_03723695.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224804147|gb|EEG22375.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 240

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 59/240 (24%), Gaps = 37/240 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V + +  +       +  L      +  +            ++                
Sbjct: 20  PVTVAIADDHHVVRQGIEALLRMCPDMEYVGGASTVDEARQLVHRT-------------- 65

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +        +R        +     +        +  T           
Sbjct: 66  -RPDVLVSDLSMPGGSGVGFLR-----NLRRECPDTRIV---VLTMHATALAMQDAFDSG 116

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + + +       +   +  +      +    +              K       +   L
Sbjct: 117 AHAFVAKDDAFDTLVSIIRRVHSGEEFLFSRTM--------------KEVTGGSQETPRL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             RE E L  I++G ++ EI   L +S  TV  Y   +M+K      +  I +AV + IV
Sbjct: 163 APREREVLQGITKGLSTKEIGAQLFLSPKTVEVYRGRLMKKFNVTKGTELIHHAVASGIV 222


>gi|21311398|gb|AAM46692.1|AF448202_3 HrpY [Erwinia chrysanthemi]
          Length = 213

 Score = 97.3 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +    D L  +           ++                  
Sbjct: 5   IKLMIADDHVIMREGLKQIFALDDNLEVVAEAGTGSQVLSQLRE---------------S 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+  +             R   L   ++              
Sbjct: 50  QVDLLLLDMSMPGICGEELIIRIVAQ--------YPRLPILVLSMYSEPQIARRVLKSGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I      +I                  G+   LT
Sbjct: 102 LGYITKDKDPEALLSAIRRVAQGARYIDHSIAEQIV--------FADCQTRGDGRHELLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  +++G   + IA +L IS  TV+ + + +M K    T +  + YA+   ++
Sbjct: 154 SREHQIMVMLAQGLGVNAIAEMLAISNKTVSTHKSRLMEKMQFTTNADIVKYALSQRLI 212


>gi|320201466|gb|EFW76046.1| transcriptional regulator FimZ [Escherichia coli EC4100B]
          Length = 210

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EI+  L +S  TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEISDKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
 gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6]
          Length = 464

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  ++ G ++ +IA  L IS NTV  ++ +I  KT   +R+ A  YA+ +  V
Sbjct: 8   SEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIYAINHGFV 67


>gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 243

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 16/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLV 87
           D +AR+     T +    M      +G    ++          E   +         +  
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGR 69

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTF 135
                     +  V +   EL  P F +   +  P              G  N      F
Sbjct: 70  SAQQRDAYLLHCPVTRHILELDEPFFWSKSPSEDPERMTYRIVRGVRDLGQVNGMQVPVF 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
               +   +     +  +    +L            + +        D + L+ RE E L
Sbjct: 130 GRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 190 QWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 232

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 7/229 (3%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           S   +  ++   ++      S   ++  L+  +G S    +       +     VS+   
Sbjct: 4   SRTLSVLEICEAVLNCPDVPSLEAQLTNLSATIGFSALKALHVRRENSKTSYRFVSAHRD 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-----PAGMDNRYCSLTFDVA 138
                 +  S       +++                             +     TFD  
Sbjct: 64  AGWQLQVGRSSPIFSDELIENAARQKTAFTKHDCAAGRTNNPTDDQTSASTVFVPTFDRC 123

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDFELTGREVECLTWI 197
            +   +  +      +    +  + L   Y ++ F +          +LT REVECL W 
Sbjct: 124 GLSGLIAFIGI-PSDLSGVIINLLHLAGLYTSSRFAALLFEEATNPTDLTPREVECLKWS 182

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S G TS EIA  LGISR+T + Y+    +K   + R+ A+  A R  ++
Sbjct: 183 SNGLTSSEIAEKLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKGLI 231


>gi|291455071|ref|ZP_06594461.1| LipReg1 [Streptomyces albus J1074]
 gi|291358020|gb|EFE84922.1| LipReg1 [Streptomyces albus J1074]
          Length = 234

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 59/238 (24%), Gaps = 24/238 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +D    + +S +   +  L  +            +  L              
Sbjct: 6   EITVLLVDDDPLLRAGLSFMLGGAGDLRVVGEAGDGREVPALVERL-------------- 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +           +   T      FH   + +      
Sbjct: 52  -RPDVVLMDIRMPHVDGLTATERLRAL---PDAPEVVLLTT-----FHADEQVLRALRAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         I   +  +     ++      ++    A      +           L
Sbjct: 103 AAGFVLKDTPPGEIVAAVRRVAAGDPVLSPAVTRQLIGQVAEDGAHTRRARARER-LATL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             RE E    +  G ++ EIA  L +S  TV  +++ ++ +     R           
Sbjct: 162 APREREVALAVGRGASNAEIAAELYLSVATVKAHVSRVLARLGLNNRVQIALLTHDAG 219


>gi|23336597|ref|ZP_00121806.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
 gi|189439505|ref|YP_001954586.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227545958|ref|ZP_03976007.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621993|ref|ZP_04665024.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132910|ref|YP_004000249.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688936|ref|YP_004208670.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690905|ref|YP_004220475.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427940|gb|ACD98088.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213592|gb|EEI81441.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239515184|gb|EEQ55051.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311773885|gb|ADQ03373.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320455761|dbj|BAJ66383.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460272|dbj|BAJ70892.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 217

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 64/214 (29%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFD 85
           R+  +D        +  +    G +  L +  D              + D ++       
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTAEVLWMANDGDAAVRRYFETPASRPDVLLIDIQMPG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  E        +     F   F                Y     DVA +   L 
Sbjct: 62  TSGLDAAREILATDPAARIL---FLTTFADQSYIAQAMGLGAKGYLIK-QDVAAVGPALQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  + L ++       A+   S D     +  L  RE E    ++EG  + +
Sbjct: 118 AVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTADSIEGLLGEREREITALVAEGLDNRD 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV N I++I+ K     R+     
Sbjct: 178 IAARLFLSEGTVRNRISAILDKLGLTNRTQLAIL 211


>gi|167623632|ref|YP_001673926.1| two component LuxR family transcriptional regulator [Shewanella
           halifaxensis HAW-EB4]
 gi|167353654|gb|ABZ76267.1| two component transcriptional regulator, LuxR family [Shewanella
           halifaxensis HAW-EB4]
          Length = 219

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + +NI++  +     + +    +      +    D   +    + +           
Sbjct: 1   MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQALLES----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                 +    LD  +           + L    +   V+                    
Sbjct: 50  --SDIEYDVVLLDLQMPGSHG--YSTLIHLRTHFQELPVV------VISAHEDNLTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  +   L  +      + +    E+  +           +    K
Sbjct: 100 IHYGSSGFIPKSSSMETLAEALEAVLFGDIWLPQGV--ELQEI------NEDETNQMASK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|90023460|ref|YP_529287.1| two component LuxR family transcriptional regulator [Saccharophagus
           degradans 2-40]
 gi|89953060|gb|ABD83075.1| two component transcriptional regulator, LuxR family
           [Saccharophagus degradans 2-40]
          Length = 205

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  +       ++ L    + +  +  ++   +    +                 D
Sbjct: 2   INVLLAEDQSMVRGALAALLNMEENIRVVAQVEDGKAALEYLNR----------THSETD 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + +    +L   +A                +    F          A   
Sbjct: 52  AIDIVLTDIEMPNITGIELAEVLAEK--------FPELRTVIVTTFGRAGYIRRALAAGV 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   L       + I  +                            L+
Sbjct: 104 YGFILKDAPSEILAEVLYKAMAGKKTIDPELA-----------------IAALDDKDPLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E + L     GK + EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 147 DKERKALRLAGSGKKTAEIANDLCLSEGTVRNYLSEAISKLNATNRIDAARIARQKGWL 205


>gi|288962862|ref|YP_003453156.1| two-component response regulator [Azospirillum sp. B510]
 gi|288915128|dbj|BAI76612.1| two-component response regulator [Azospirillum sp. B510]
          Length = 227

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 76/235 (32%), Gaps = 15/235 (6%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +     S ++HL    D  A ++          ++ A+ +       +      F
Sbjct: 3   VLIADDHSIVRSGLTHLVGELDERATVVAATS----FGQLNAILDASLNDGAMQDGGAAF 58

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      D V  +           +         +  +  E     +     
Sbjct: 59  DLIVMDLRMPGLGGLDDVEALVKR--------VAPVPVAIFSMIESPDEMRAVLSRGVRA 110

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   + D   +   L L+   G  +               A    +    +     LT R
Sbjct: 111 FIPKSTDDVLVVNILRLVMAGGSYVPPVLGMPGTPAPVATAAARNAAPGIFD---GLTRR 167

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++E L  +++G ++ EI   LG++ +TV  ++  +++     +R+ A+     + 
Sbjct: 168 QLEVLDLLAQGLSNQEIGERLGLNLSTVKTHVTGVLKALGVGSRTQAVLLVKESG 222


>gi|262377214|ref|ZP_06070439.1| two-component system response regulator protein [Acinetobacter
           lwoffii SH145]
 gi|262307952|gb|EEY89090.1| two-component system response regulator protein [Acinetobacter
           lwoffii SH145]
          Length = 216

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+                  
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNEFYERLE--------------NGP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +  +          ++         +           A   
Sbjct: 47  EPDLVLLDLNLPGASGFSALVHVRAQ--YPSLPIIVVSAHEEVSII------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    +                   +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIREVLEGEIWLPPNLPANMNF-----DPRAADETALAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|227015848|gb|ACP17945.1| putative two-component response regulator [Pseudomonas
           nitroreducens]
          Length = 208

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 71/224 (31%), Gaps = 26/224 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALTE----------YVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +++++ +D      M M  L E            G     LV+  +     LD  +    
Sbjct: 1   MSKVLIVDDHPVIRMAMRVLLEKEGHVVMGETDNGVDALSLVKDLVPDLVVLDIGIPRLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  ++  +             L           +       + +      +A +  
Sbjct: 61  GLEVISRISAFDLP--------LKILVLTGQSASLFAMRCMQAGASGFVCKQGGLAELIS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           + +    +    +              L+ RE+  L +++ G +
Sbjct: 113 AVSAVVAGYNYFPSTAIRQTRRNSGQLDDQELIQR--------LSDREMAVLQYLANGYS 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI+  + IS  TV+ Y   ++ K    +    I +A RN +V
Sbjct: 165 NKEISEQMFISNKTVSTYKTRLLLKLNAHSLVDLIEFAKRNALV 208


>gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 210

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 69/225 (30%), Gaps = 24/225 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           V  + T  D       L   +     +  + E   G       R        +D  +   
Sbjct: 6   VITILTADDHALLRAGLAAVIGSQPDLRLVGEAANGEEAVEAYRLHQPDLMLMDLRMPVM 65

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  +                 +    +    +     +     Y         + 
Sbjct: 66  DGVSAIGAIRDE--------FPDARIIALTTYEGDEDIHRALSAGARGYLLKDTLRTELL 117

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  ++   R I       +                 +     LT RE+E L  +++G 
Sbjct: 118 QVIRNVYRGLRGIPAPVAARLA---------------EYTPRVALTARELEVLELMAQGL 162

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ +IA+ LG + +T+  ++ +I++K  T  R+ A+  A+R  I+
Sbjct: 163 SNPDIAIRLGRAESTMKVHVRNILQKLGTDDRTAAVTTALRRGII 207


>gi|37223196|gb|AAQ90192.1| LuxR [Vibrio cholerae]
          Length = 214

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 17/197 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  + P         +  
Sbjct: 18  IKACRNNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNSPKKWREYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNTDLTKREKECLAWPC 197

Query: 199 EGKTSDEIAVILGISRN 215
           EGKTS +I  ILG S  
Sbjct: 198 EGKTSWDIPKILGCSER 214


>gi|83814124|ref|YP_446881.1| LuxR family DNA-binding response regulator [Salinibacter ruber DSM
           13855]
 gi|83755518|gb|ABC43631.1| DNA-binding response regulator, LuxR family [Salinibacter ruber DSM
           13855]
          Length = 253

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 22/227 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT  V   P   + +     +D T+          E  G +      +   ++ + D+ 
Sbjct: 9   IRTFLVDDHPAILEAI--RNRIDDTLDV--------EVCGMATSSDEAFRKIEDMEPDTA 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V      D      +         +Q         +  +           + Y       
Sbjct: 59  VVDISLEDAHGLDLVQNLQSQCPEVQVVVYSM---YDEMVYAERAIQAGASGYLMKDQPT 115

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLT 195
             +   + ++      + R+       +A+   N     +         E T RE+    
Sbjct: 116 EDLIEAIRVVDGGEVFLSRE-------MASQILNKVARGESSEPSFPIEEFTDRELAVFQ 168

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + EG + +EI   L ++R TV  Y      K    + S  + +AV+
Sbjct: 169 MLGEGCSIEEIQDRLNLARKTVETYRRRAKEKLGFDSVSKLLQFAVQ 215


>gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans]
          Length = 202

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 25/198 (12%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT--------LPENITPPAG 125
              +   + P D           +   V         P   +        L + I P   
Sbjct: 3   PSVLQLRNTPPDWHALWCSEGFYQIDPVQHLALSRVSPFVWSYDVKADTPLQKIIDPCHA 62

Query: 126 ----------MDNRYCSLTFDVARIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQAN 171
                     +                 L  L            +  L + GL++     
Sbjct: 63  PVSSYLHDQQLTCGVSVPIHLPRGGFASLTGLRTGNARNVLQDAQQTLSDFGLISHALQE 122

Query: 172 MFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                     + +    LT RE ECL W ++G T+ EIA  L  S   V  ++AS M K 
Sbjct: 123 AAYPLFSKELRTYPHIHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKL 182

Query: 229 ATKTRSGAIAYAVRNNIV 246
             K R  A+  A    ++
Sbjct: 183 GAKNRVQAVVRATHYRLL 200


>gi|291517024|emb|CBK70640.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bifidobacterium longum subsp.
           longum F8]
          Length = 217

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 64/214 (29%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFD 85
           R+  +D        +  +    G +  L +  D              + D ++       
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTAEVLWMANDGDAAVRRYFETPASRPDVLLIDIQMPG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  E        +     F   F                Y     DVA +   L 
Sbjct: 62  TSGLDAAREILATDPAARIL---FLTTFADQSYIAQALGLGAKGYLIK-QDVAAVGPALQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  + L ++       A+   S D     +  L  RE E    ++EG  + +
Sbjct: 118 AVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTADSIEGLLGEREREITALVAEGLDNRD 177

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV N I++I+ K     R+     
Sbjct: 178 IAARLFLSEGTVRNRISAILDKLGLTNRTQLAIL 211


>gi|302561339|ref|ZP_07313681.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302478957|gb|EFL42050.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + +  + T +D +  +              +                
Sbjct: 2   IRVLVADDEPLIRAGIRMILTSADDIDVVAEARDGREAVETARSTA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       L    AL+E  +    ++         F      +       
Sbjct: 48  ------VDVALLDIQMPVLDGLTALAELGRVAPGVRVL---ILTTFGERDNVLRALGHGS 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +         +       +    A  A   +  +    +   LT
Sbjct: 99  AGFLLKDSAPQELIHAVRAAAAGNAYLSPAATRHVVDTLASPAATVRGEEARR-RLAGLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E L  + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 158 ARESEVLALLGEGLSNADAGARLHMSEATVKTYVSRILTKLDCENRVQAALLARDAGL 215


>gi|256786676|ref|ZP_05525107.1| two-component system response transcriptional regulator
           [Streptomyces lividans TK24]
          Length = 202

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 11/195 (5%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
            A  E VG +             + D  V      D        +       ++      
Sbjct: 13  EADIEVVGEAGTAAEAQARVTATRPDVAVLDVRLPDGSGVEVCRDIRSRDESVRCLM--- 69

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
              F              + Y       A +   +  +     ++               
Sbjct: 70  LTSFADDEALFDAIMAGASGYVLKDIRGAELLGAVREVAAGKSLLDPAATAR-------V 122

Query: 170 ANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
               +        +   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K 
Sbjct: 123 LERLRGGGTRPDDRLARLTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKL 182

Query: 229 ATKTRSGAIAYAVRN 243
             + RS A A+  R 
Sbjct: 183 GMQRRSQAAAFVARL 197


>gi|82701861|ref|YP_411427.1| two component LuxR family transcriptional regulator [Nitrosospira
           multiformis ATCC 25196]
 gi|82409926|gb|ABB74035.1| two component transcriptional regulator, LuxR family [Nitrosospira
           multiformis ATCC 25196]
          Length = 217

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 59/239 (24%), Gaps = 30/239 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
               +  ++L  +       ++ L      +               + A           
Sbjct: 1   MAASKAQVMLVDDHAMLRHGMAMLINLEPDMEVFAEAGDGDEALATLKA----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  + +   F++++ +           L     L   +          
Sbjct: 50  ---GHHADIVLMDVSLKTLSGFEVIKSIHTL--------LPALPVLVVSMHDEGVYAERA 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +      +          + A   N     +     
Sbjct: 99  LRAGARGYVMKQEPGEVLVTAIHEVLKGNIYLS-------KPMHAKLLNRVAGGNSEPEP 151

Query: 183 DF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               LT  E E L  I  G +S EIA +L  S  T+  +  +I  K   K  +  I YA
Sbjct: 152 LINSLTPSEFEVLHLIGSGHSSQEIAKLLSRSIKTIETHRFNIRTKLNLKDGADLIRYA 210


>gi|318057750|ref|ZP_07976473.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 229

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 58/232 (25%), Gaps = 23/232 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +D      +  +   +  L  +               L               
Sbjct: 6   VTVLLADDDALVRLGLRLMLGGAPELEIVGEAADGEEAVRLAEELG-------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +            + P  L    FH   + +       
Sbjct: 52  -PAVVLMDLRMPGTDGLTATARIRERP--------EAPEVLVLTTFHADEQVLRALRAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A I   +  +     ++       +    A   +     D    +   L 
Sbjct: 103 AGFLLKDTPPAEIAAAVREVARGRPVLSPLVTRRLIAQVAGGESPHARRDRARARLASLA 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    +  G ++ EIA  L +S  TV  +++ ++ K     R      
Sbjct: 163 EREREVALAVGRGASNAEIAAELYLSVPTVKAHVSRVLAKLHLNNRVQIALL 214


>gi|260777855|ref|ZP_05886748.1| transcriptional regulatory protein UhpA [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605868|gb|EEX32153.1| transcriptional regulatory protein UhpA [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 203

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 55/232 (23%), Gaps = 37/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+ L  +     S  + L +    +  +   +        +                  
Sbjct: 2   INVALVDDHVIVRSGFAQLLSLESDINVVGEFNSVSDAKQGL---------------PGS 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +  +    L+  +                     V  +            
Sbjct: 47  GANVCITDISMPDESGLTLLESL---------PSGIACV--MLSVHDSPAMVEKALEAGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +      G  +  +            A    S         +LT
Sbjct: 96  LGYLTKRCSPEELVQAVRTASTGGCYLTPE-----------IALKLASPKKSTASLSQLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE +    ++ G     +A  LG+S  TV+ + A+ M K A K        
Sbjct: 145 KREKQVCELLATGMDVKLVASQLGLSHKTVHVHRANAMDKLAVKNNVELAKL 196


>gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 212

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 17/199 (8%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           +G   F L        + + +   + WP +       +       +L        P+   
Sbjct: 8   LGFQTFSLAYQRPHALEAVTAPYLTTWPCEKDGACDPASARIRDPLLDYAVTGVKPLIWR 67

Query: 116 LPENITPPA----------GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                +                        D       + +L  +      D      ++
Sbjct: 68  SGSWKSLNRKVRFPCLRGSEARAGLIVPLPDQRGRIGAITMLSAQREDYPEDIAEAGRIV 127

Query: 166 AAYQANMFKSYDVHWG-------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           A        S     G          +L+ R++E L WI+ GK++ EIA+ILG+SR  V 
Sbjct: 128 ALAVLVRAGSLAPAVGAVSPALASLAQLSPRQIEILDWIAHGKSNSEIALILGLSRRNVT 187

Query: 219 NYIASIMRKTATKTRSGAI 237
            +++ I++K    +R+ A+
Sbjct: 188 YHVSEILKKLDVTSRTQAV 206


>gi|167725881|ref|ZP_02409117.1| capsula synthesis response regulator transcription regulator
           protein [Burkholderia pseudomallei DM98]
 gi|254299732|ref|ZP_04967181.1| CblR [Burkholderia pseudomallei 406e]
 gi|125657174|gb|ABN48662.1| capsular synthesis response regulator/transcription regulator
           protein [Burkholderia pseudomallei]
 gi|157809573|gb|EDO86743.1| CblR [Burkholderia pseudomallei 406e]
          Length = 248

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 15/231 (6%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+++++  + E   S +++   R   +A +     +      +      +  +  +L+ 
Sbjct: 13  EQLSVIMLDDHEVVLSGITYQLKRERDIAVLGTFSRSRQLFDYLAQHGPALAHTRPVLLL 72

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                 Q  D          L+R + +        +L         +             
Sbjct: 73  DYALAPQDTD-------GIALIRRLCVQ--FPVCPILIVSGHHQPSIVRLALM------A 117

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +  +   +  +    R +         L+      M +           
Sbjct: 118 GARGYIGKNCTLEELVEAIRRVAGGERYVHPSLAERDDLVLPAAIEMRRGEAERATLASL 177

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE+E L    +G    +IA  L  S  T++    S  RK         
Sbjct: 178 LSPRELEVLRLTLQGFEVGQIAEKLSRSNKTISTQKRSAYRKLGISGDREL 228


>gi|269102895|ref|ZP_06155592.1| transcriptional regulatory protein UhpA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162793|gb|EEZ41289.1| transcriptional regulatory protein UhpA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 202

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 60/232 (25%), Gaps = 37/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     S  S L +  + +  +          + +                  
Sbjct: 2   IKVVLIDDHMIVRSGFSQLLSLEEDIEVVGEFGSAAEARVGL---------------PGT 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +    L++ +                 +   V  ++       +   
Sbjct: 47  EANVCILDISMPDESGLSLLKDI---------PSGIAC--IMLSVHDSVAVIEQALSCGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S       +   +  +    +    D                   +        LT
Sbjct: 96  VGYLSKRCSPDELIDAVRSVATGKQYFSPD-----------IEINLVQQEDDEQASVHLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    +++G     +A  LG+S  TV+ + A+ M K   K       Y
Sbjct: 145 KREREIGLLLAKGLDVKTVAAELGLSHKTVHVHRANAMEKLGVKNNVELAQY 196


>gi|330465576|ref|YP_004403319.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
 gi|328808547|gb|AEB42719.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
          Length = 216

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 29/240 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q  +++  +       +  +      +A ++           +                
Sbjct: 3   EQARVLIVDDHPVVRRGLRTMLEGESWVAEVLEAASCAEAIAAV---------------A 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +      +D  +        V  +                 +   +             
Sbjct: 48  HEQVTVVAMDIALPDGDGVQAVGQILRHR--------PETAVVMLTMADEDELVARALRV 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     D   +   L  +   G ++           AA       +          
Sbjct: 100 GARGYLLKDTDPDLVVDALRTVAGGGVVLGPGIT------AAALGRAQPATVSLPPPFDR 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G+ + +IA   G+S  T+ N +++I+ K     R  A   A    I
Sbjct: 154 LTPRERDILAHLAAGEDNAQIARRFGLSTKTIRNQVSAILGKLGVADRVQAALLARDVGI 213


>gi|320093927|ref|ZP_08025762.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979139|gb|EFW10647.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 215

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 68/238 (28%), Gaps = 36/238 (15%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           +    +  +++  + E     ++ +  R+D L  +           R             
Sbjct: 3   DISATRTRVMIVDDHEIVRRGIAEIVDRADGLEVVAEAGSVQDALRRAE----------- 51

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                       +D  +      D++  +  +              +    F        
Sbjct: 52  ----LVRPDVILVDLQLPDGTGIDIMDSLGRTH--------PEVLPIVLTSFDDDEALAE 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y   T   A I   +  +     ++    L              +    H  
Sbjct: 100 SLDKGARAYVLKTVRGAEITDVIKAVADGRVLLDERTLT-------------RRRTDHED 146

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 147 PTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 204


>gi|319942475|ref|ZP_08016786.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803948|gb|EFW00864.1| hypothetical protein HMPREF9464_02005 [Sutterella wadsworthensis
           3_1_45B]
          Length = 243

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 27/242 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E +Q+ +++  E       ++ +         +       +    +             
Sbjct: 1   MENRQIRVLVVDEYPLFRKGITDVLASHPDFQVIGATADDKTALSLL------------- 47

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD       P DL+      E        +    L      +    +  
Sbjct: 48  ---SLKPDLLVLDLDAQGFSPTDLLS-----EVKYRLPSCRTLMLLNK--AESSQVLMQA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                N +   T         L L+   G          +   A +     +        
Sbjct: 98  IRLDANGFILRTVSTDEFIDQLKLVHSGGMAASDKITAAL---ADHLRTRVQKKPAKDPS 154

Query: 183 DFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             +L T RE E L  ++ G  + EIA +L I+  TV  ++  +++K   ++R  A  +A 
Sbjct: 155 ITQLLTNREYEVLCCVASGLANREIAQVLKITDGTVKVHVKHLLKKLKFRSRVEAAVWAS 214

Query: 242 RN 243
            +
Sbjct: 215 EH 216


>gi|239813574|ref|YP_002942484.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239800151|gb|ACS17218.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 227

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 64/224 (28%), Gaps = 17/224 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  +   +S           +     L    D      +D  +       
Sbjct: 3   ILIADDHRLVIEAVKAKLSELGPGIEFVLAMSVDELLAGATDELDLALIDLNMPGADGQA 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +                 +    +       +        +    +    +   + 
Sbjct: 63  HIDEIRRRH--------PAVPVIVLSGYEDPAIMRSALERGVLGFIPKAYSPEVMLSAVR 114

Query: 146 LLFPKGRIILRDRLWEI-----GLLAAYQANMFKSYDVHWGK----DFELTGREVECLTW 196
           L+   G  +    L  +       +A  Q    +S              LT R+VE L  
Sbjct: 115 LVLAGGVYVPPMMLTALPPGIVAGVAPTQNGDARSAGASSQTLEHLRSVLTERQVEVLQL 174

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +S+GK +  I   LGIS  TV  ++A+I R    + R+ A+  A
Sbjct: 175 LSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 218


>gi|253998444|ref|YP_003050507.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200519|ref|YP_004039177.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985123|gb|ACT49980.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439835|gb|ADQ83941.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 211

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 73/239 (30%), Gaps = 34/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +         HL  +S  +  +  +D                G   + +    
Sbjct: 5   VRVMLVDDHAVVRQGYRHLLEKS-GIKVIAEVDS---------------GEDAYRVYSEH 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      + ++ +   +        +    L   +               
Sbjct: 49  QPEVVVMDLSMRGMGGLEALKRIVSRD--------RNAKVLVFSMHDDAIFPTRALQAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y + +     +   +  +    + +  D   EI +                     L+
Sbjct: 101 SGYVTKSSAPDVLVEAVFAIANNRKYVSHDIAQEIAM----------HNINGGDILNSLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +++G++ ++IA  L +   T+ N    + +K   +  +  +  A++ NI+
Sbjct: 151 SREFEVFNLLAQGRSIEDIAAALCLDYKTIANVQTRLRQKLNVENAAQLMLLAIKLNII 209


>gi|23465477|ref|NP_696080.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23326132|gb|AAN24716.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 218

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 64/214 (29%), Gaps = 13/214 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFD 85
           R+  +D        +  +    G +  L +  D              + D ++       
Sbjct: 3   RIAIVDDDPIVCQSLETILTATGTAEVLWMANDGDAAVRRYFETPASRPDVLLIDIQMPG 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  E        +     F   F                Y     DVA +   L 
Sbjct: 63  TSGLDAAREILATDPAARIL---FLTTFADQSYIAQAMGLGAKGYLIK-QDVAAVGPALQ 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++  + L ++       A+   S D     +  L  RE E    ++EG  + +
Sbjct: 119 AVMAGQVVLGAEVLGKLTERTPDPADSDDSRDTADSIEGLLGEREREITALVAEGLDNRD 178

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L +S  TV N I++I+ K     R+     
Sbjct: 179 IAARLFLSEGTVRNRISAILDKLGLTNRTQLAIL 212


>gi|67640400|ref|ZP_00439208.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|134281909|ref|ZP_01768616.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167900009|ref|ZP_02487410.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|226199200|ref|ZP_03794760.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|251768095|ref|ZP_02269470.2| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|134246971|gb|EBA47058.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|225928607|gb|EEH24634.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|238521110|gb|EEP84564.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           GB8 horse 4]
 gi|243060824|gb|EES43010.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
          Length = 202

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 56/223 (25%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P   D L   +     ++         E +      L          +D  +  
Sbjct: 1   MLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEAL-----TLAEALAPDLALMDIGMQG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                L                     L   +   +           + Y         I
Sbjct: 56  MNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPATEI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +                      A               LT RE + L  +++G
Sbjct: 108 VRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDILDALAQG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 157 LSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 199


>gi|311900038|dbj|BAJ32446.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 214

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 59/210 (28%), Gaps = 15/210 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   V     + A+ E    +  L +  +L  +++ D ++      
Sbjct: 3   RVLVVDDHPVVRRGLRALVEDLPDVTAVGEAADGAAALALLAELPADRRPDVVLMDLQMG 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +  + +                 + T  + +         Y         +   +
Sbjct: 63  TGMHGVEATRRITALPDPPAVLV--LTTYSTDADILAAVEAGATGYLLKDAPPEDLAAAI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++       +                       L+ RE E L  ++EG  + 
Sbjct: 121 HATARGETVLAPPVAARL-------------LGRVRAGRPSLSPREAEILQLLAEGLPNR 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +I+  L IS  TV  ++  I  K    +R+
Sbjct: 168 QISKRLFISEATVKTHLVHIYDKLGVDSRT 197


>gi|302338339|ref|YP_003803545.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301635524|gb|ADK80951.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 216

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 18/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P        +I  +  +    +    +  +      ++         +D  +
Sbjct: 4   RIVVVDDHPIVRQGFVLLINQESDLEVVGQAEDPSAAL-----TIISATKPDLVLVDLSL 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            +    ++++ ++                L   +                 Y   +    
Sbjct: 59  KNGDGLEMIKDLSRL--------YPELLMLAVSLHDENVYAERALRAGARGYIMKSEATD 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            + I +  +   G  +       +                       L+ RE E    I 
Sbjct: 111 SVMIAIRQVLSGGFFLSAKMNERLLTRLTAAGKQ-----DTIDPMARLSDREFEVFQLIG 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +G  +  IA  L +S  T+  Y + +  K   K  +  +  AV 
Sbjct: 166 QGYDTRLIAESLCLSIKTIETYKSHLKTKLDLKNSTELMQRAVE 209


>gi|239983240|ref|ZP_04705764.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 237

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 59/238 (24%), Gaps = 24/238 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L  +D    + +S +   +  L  +            +  L              
Sbjct: 9   EITVLLVDDDPLLRAGLSFMLGGAGDLRVVGEAGDGREVPALVERL-------------- 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +           +           +   T      FH   + +      
Sbjct: 55  -RPDVVLMDIRMPHVDGLTATERLRAL---PDAPEVVLLTT-----FHADEQVLRALRAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         I   +  +     ++      ++    A      +           L
Sbjct: 106 AAGFVLKDTPPGEIVAAVRRVAAGDPVLSPAVTRQLIGQVAEDGAHTRRARARER-LATL 164

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             RE E    +  G ++ EIA  L +S  TV  +++ ++ +     R           
Sbjct: 165 APREREVALAVGRGASNAEIAAELYLSVATVKAHVSRVLARLGLNNRVQIALLTHDAG 222


>gi|292488978|ref|YP_003531865.1| Nitrate/nitrite response regulator protein [Erwinia amylovora
           CFBP1430]
 gi|292900115|ref|YP_003539484.1| nitrate/nitrite responsive two-component response regulator
           [Erwinia amylovora ATCC 49946]
 gi|291199963|emb|CBJ47087.1| putative nitrate/nitrite responsive two-component response
           regulator [Erwinia amylovora ATCC 49946]
 gi|291554412|emb|CBA21869.1| Nitrate/nitrite response regulator protein homolog [Erwinia
           amylovora CFBP1430]
          Length = 209

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 65/240 (27%), Gaps = 34/240 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E Q+ ++++  +       +  L         +                    G     
Sbjct: 1   MEAQKYSVLIVDDHPLLRRGLHQLLAMEPRFEVIAEAGD---------------GEEALF 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             R  L     LD  +      + ++ +  S              +         +    
Sbjct: 46  KARQLLPHLILLDLKMQGMSGLETLKALRSSGIS--------SRVVVLTASALSRDFTAL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     +   +   ++ +                L A+     +K        
Sbjct: 98  QQAGAEGYLLKDSEPEDLLAQIIEVAEGRVARSP------CLQASGPVESWKC-----DP 146

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E L  ++ G  + ++A  L IS  TV  +I +++RK   ++R  A    + 
Sbjct: 147 LAILTAREQEVLKEVASGLPNKQVAENLAISEQTVKVHIRNVLRKLNVRSRVAATVLWLE 206


>gi|146309018|ref|YP_001189483.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145577219|gb|ABP86751.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 209

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +    E   G     ++R        LD  +     
Sbjct: 3   RVLVAEDHTIVREGIKQLIGMARDLEVAGEACNGEQLLEVLRRTPCDVVLLDISMPGVNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +           +     L   +                 Y +   D A +   
Sbjct: 63  LEAIPRIRAL---TEAPAI-----LVLSMHDEAQMAARALKAGAAGYATKDSDPALLITA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   GR I       +        +             +L+ RE      +  G+  
Sbjct: 115 IRKVASGGRYIDPALADRMVFEVGLTDSR--------PPHAQLSEREFSVFERLVRGEGV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA+ L IS  TV+ + A +M+K    + +  + YA+ + +V
Sbjct: 167 NDIALHLAISNKTVSTHKARLMQKLGAHSMADLVRYAMEHRLV 209


>gi|330898904|gb|EGH30323.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 209

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  +  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLARDMQVVGEASNGEQLLETLRHVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +           +     L   + +             
Sbjct: 48  -CEVVLLDISMPGVNGLEAIPRILAL---TNPPAI-----LVLSMHNEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPDLADRMVFEVGLTDSRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKMKLNSLADLVKYAMEHKLL 209


>gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126]
 gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126]
          Length = 200

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++ L+  V             G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDALCQLLMLEDDVE-----EVHAASDGQEAITLLEKEEVDVAILDIEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  + +++        +    +    F          A   + Y      ++ + 
Sbjct: 60  TGLDVLEWIRVNQ--------RETKVVIVTTFKRKGYFKRALAAHVDAYVLKERSISDLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                    +  L+ RE E L  +++G 
Sbjct: 112 ATIHTVLAGQKEYSPELVEGVAF-----------------DNNPLSQREQEVLAMVAQGS 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A   + +
Sbjct: 155 TNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199


>gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 301

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 25/234 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL-----VRWDLFQEQKLDSIV---SSDWPFDLV 87
           +            ++     +G    +                    V      W  D  
Sbjct: 67  LEASRSMDEAMDVLHGAILELGFPRVVYGCVSIAHLPSGTWVPAPLQVRGFPDRWDRDWP 126

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA----------GMDNRYCSLTFDV 137
           R  A            +       V     + + P            G++       F  
Sbjct: 127 RHRAHDPYAHTA--FLKMESTNWTVVQNNADLLDPAQVDCISYINDLGLNPGLTVPLFIP 184

Query: 138 ARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVE 192
                 +  +   G              + ++A Y  N   + +     +   L+ RE+E
Sbjct: 185 GHHYGFITAVGDGGLDGWDAAADRAGPTLAMIANYFDNFAIRRFGGPPKESQSLSKRELE 244

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CLTW + GKT ++IAVIL +S +TV  Y+  + +K     RS A+A A+   ++
Sbjct: 245 CLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAMCLGMI 298


>gi|254254914|ref|ZP_04948231.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
 gi|124899559|gb|EAY71402.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158]
          Length = 510

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 80/251 (31%), Gaps = 18/251 (7%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E ++   +  R+ E+R +    +      +A  I             A  E +G + 
Sbjct: 254 MDLEPRKQAELALRQSEERFAKAFRMSP----VATAIVTADRFELLDVNDAFVEMIGHAR 309

Query: 61  FLLVRWDLFQEQKL-----DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
             L+     +            +      D     A          ++       PV   
Sbjct: 310 DDLLGKSADEISLWAERDARQRIDEQLARDGSVRSADVRIRTLDGDVRDCVVSAEPV--- 366

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                    G D    +L     R R  + L++     +     +   L+         +
Sbjct: 367 ------AIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANARRAN 420

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +  +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  
Sbjct: 421 APDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGE 480

Query: 236 AIAYAVRNNIV 246
           AI +A    IV
Sbjct: 481 AIVWARERGIV 491


>gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 207

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 67/236 (28%), Gaps = 33/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ L  + E     +  L      L  +       +    + A                
Sbjct: 2   LSVFLVDDHEIVRRGLIDLLDSDPDLRVIGEAGDVANAMAGIRAT--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +       +  +L          +      +       
Sbjct: 47  RPDVAVLDVRLPDGNGIELCRDLLAELDGLHCLIL--------TSYTDEHAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++       +                  G   +LT
Sbjct: 99  SGYVVKDIKGMELAEAIKAVGAGRSLLDNRAAETLE----------ARLRGAEGPLADLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E + L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A R 
Sbjct: 149 EQERKLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVLATRL 204


>gi|332142670|ref|YP_004428408.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552692|gb|AEA99410.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 218

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 36/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  + E     +  L  +      +  +D   +                     +D
Sbjct: 1   MNILIIDDHEIVRDGIKALIEQEYGWHVVYAVDSIGALPS---------------YASFD 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + ++  FD +  +           ++         +  +           
Sbjct: 46  EVDVAILDISLVNESGFDTLVKIKQQ-----APFVKCLMLSM---YEHVGYISKALELGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   L  L      +  D   ++        ++             LT
Sbjct: 98  DGYVTKNAATKELMNSLESLERDENYLSSDISKKLAFGDKCLTSL-------------LT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +++G    +IA  +  +  TV  +  +I +K    ++ G +  A+    +
Sbjct: 145 DREKEIFLLLAKGFQPKQIAYHIDTAPKTVMVHRTNIYKKLNVTSQFGLLRIALEIGYL 203


>gi|94314633|ref|YP_587842.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358485|gb|ABF12573.1| two component transcriptional regulator, LuxR family (receiver
           domain) (bvgA-like) [Cupriavidus metallidurans CH34]
          Length = 210

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 74/221 (33%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D  A  + +   +S  + + ++ E   G +   +VR        LD  +      
Sbjct: 4   VLIVDDHPAVRLVIKTQLSQVLGVSSVLEADNGQAAIDVVRQCKPDLVILDLDIPKINGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++  +   + +    VL    +                      + S   D+  I   +
Sbjct: 64  EVIPRLKAIQPNIR--VLVISGQDPMTF------APRAMQVGAKGFVSKMQDMTDIMRCV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +   + +      +       +          +LT +E++ +  +S+G ++ 
Sbjct: 116 ESVLAGYTLFPAEVVE-----SGAVPGKAREDSELLQ---QLTDKEIQIMQMLSKGMSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I   L IS  TV+++   IM K    T    I +A R NI
Sbjct: 168 AIGDSLFISNKTVSSHKTRIMEKLHVTTLLELIDFARRCNI 208


>gi|300718082|ref|YP_003742885.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299063918|emb|CAX61038.1| transcriptional regulator [Erwinia billingiae Eb661]
          Length = 215

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 31/243 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + +   I+L  +     + V  L    + L  +                    G     
Sbjct: 1   MKEEAATILLIDDHPMLRNGVKQLIALDERLQVVAEAGN---------------GTLGVE 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          LD  +      D +  +   E      V          V     + +  
Sbjct: 46  LAGELDPDLILLDLNMPGMNGLDTLVQLRTIELSGRIVVF--------SVSDHEDDVVNA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   L        ++       +           +       +
Sbjct: 98  LKRGADGYLLKDMEPEELLKSLHQAAAGQMVLSETLTNVL-------VASLRENRPSDER 150

Query: 183 DFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D E LT RE + L  IS+G T+  IA  L I+ +TV  ++  +++K   K+R  A  +A+
Sbjct: 151 DIEQLTRRERDILKLISQGMTNKAIARKLSITESTVKVHVKHLLKKMKLKSRVEAAVWAL 210

Query: 242 RNN 244
           ++ 
Sbjct: 211 QSG 213


>gi|121592985|ref|YP_984881.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|120605065|gb|ABM40805.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
          Length = 232

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 26/232 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  +       +  + +RS+LLA  +      S   ++    +             
Sbjct: 8   VKILIVDDHGLVREGLQAILSRSELLAECVQAWDAASLWQQLEQHAD------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       L+  +           L +   +     H     +       
Sbjct: 55  -IDLVLMDIQLPDVSGLSLLEELTQR--------LPQLPVIMLSADHDAGIVLHSLEQGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   +     +   + L+   G  +  + L +     A                   T
Sbjct: 106 RGFLPKSSLNQVLVSAIRLVAAGGVYVPPEALQKPAARPA----AAGPQAPVSIASLGFT 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            R+ +    + +G ++ +I   L ++  TV  ++  I+R     +R+  IA 
Sbjct: 162 ARQTDVFRLLLQGLSNKQICRELDLAEPTVKIHVRGILRTLGVSSRAEVIAK 213


>gi|223939915|ref|ZP_03631783.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223891406|gb|EEF57899.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 223

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  +++  +       +  +  R   L         V     +  L             
Sbjct: 7   EKSRVLIVDDHPLFREGLQQMIDRDPSLVVCGEAADAVQAMEAINTL------------- 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  + +    DL++ +    +     VL                       
Sbjct: 54  --KPNLVLVDISLGNASGIDLIKNI--KNQHDDLPVLVVSM------HDESLYAERALRA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +R  +  +      +           +     M    D        
Sbjct: 104 GAMGYVMKHEPAKTVRGAIYKVLGGDIYLSERMAS-----SMLVKFMKGKTDEPLSPLEI 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE+E    + +GK + +IA  + ++  T+N++ A I  K   K+ +  + +A+++
Sbjct: 159 LSDRELEVFRMLGQGKGTRQIAEEMNLTIATINSFRARIKDKLHLKSSTEVMLHAIQS 216


>gi|297155229|gb|ADI04941.1| two-component regulator [Streptomyces bingchenggensis BCW-1]
          Length = 181

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A   +G+  +     +I      ++  + A+  +          +   LT RE E LT
Sbjct: 70  GAAARVVGIRAVAVGDSVISPGLTRKL--IDAFTKSRPGHTPEQDRQLARLTEREREVLT 127

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ G T+ EIA  L ++ +TV ++++ I+ K   + R   + +A    +V
Sbjct: 128 GVATGWTNTEIAERLCLAESTVKSHVSRILTKIGARDRVQVVIFAYDVGLV 178


>gi|29829791|ref|NP_824425.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606900|dbj|BAC70960.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 69/249 (27%), Gaps = 42/249 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + +++  ++    + +S L +    +  +                    G     L  
Sbjct: 9   PPLRVLVADDNPVVRAGLSALLSAHPDIEVVAEASN---------------GEEAKALAG 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +        +  +           ++  T +                 
Sbjct: 54  EHRPDVVLLDVRMPGTDGLTALPEL-----------VRLTTVMMLTYSREPKVVAEALRR 102

Query: 126 MDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA--AYQANMFKSYDVHWGK 182
             + Y     F V  +   +  +      +              ++  ++       W  
Sbjct: 103 GASGYLVHGEFTVPELITAVRDVRRGRLTVSSSLSVSYEPNGNPSHLQSVVAQSSKAWPT 162

Query: 183 -------------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                        DF L+ REVE +  I+ G  + +IA    IS  TV N+I  I  K  
Sbjct: 163 RVTGLPRRTVNRLDFGLSSREVEVMDLIAAGMNNRQIAATCFISEKTVKNHINRIFAKLH 222

Query: 230 TKTRSGAIA 238
           + TRS AIA
Sbjct: 223 SATRSEAIA 231


>gi|251789503|ref|YP_003004224.1| LuxR family two component transcriptional regulator [Dickeya zeae
           Ech1591]
 gi|247538124|gb|ACT06745.1| two component transcriptional regulator, LuxR family [Dickeya zeae
           Ech1591]
          Length = 213

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +    + L  +           ++                 +
Sbjct: 5   IKLMIADDHVIMREGLKQIFALDENLEVVAEAGTGSQVLSQLRE---------------N 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+  +             R   L   ++              
Sbjct: 50  QVDLLLLDMSMPGICGEELIIRIVAQ--------YPRLPILVLSMYSEPQIARRVLKSGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I      +I                  G+   LT
Sbjct: 102 LGYITKDKDPEALLSAIRRVAQGARYIDHSIAEQIV--------FADCQTRGDGRHELLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  +++G   + IA +L IS  TV+ + + +M K    T +  + YA+   ++
Sbjct: 154 SREHQIMVMLAQGLGVNAIAEMLAISNKTVSTHKSRLMEKMQFTTNADIVKYALSQRLI 212


>gi|239978812|ref|ZP_04701336.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 213

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 27/237 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +VL  ++    + +  +      L  +                    GA    +VR   
Sbjct: 1   RLVLADDERMVRTALRAILGAEPDLEVVGEAAT---------------GAEAVSVVRATA 45

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +           +  +  +      + P  L    F      +        
Sbjct: 46  PDVVLMDVRMPEVDGIRATERVLAAGGE------RAPRVLVLTTFENDDHVLAALRAGAA 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     +   +   + ++     ++    +  + L                     LT 
Sbjct: 100 GFLLKRAEAETLLHAVRVVARSDTLLFPSSVRALAL------AHDPRRAAEPPWAARLTD 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  ++ G T+ EIA  L +   TV +++A+++ KT T+ R+ A+  A    +
Sbjct: 154 REREVLHLMATGLTNAEIAARLTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGL 210


>gi|117928181|ref|YP_872732.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648644|gb|ABK52746.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 216

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 25/235 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  E       V         L R        +      ++ E +               
Sbjct: 1   MAAEQPTTVLLVDDHDLIRQGLRRAFERAGDFTVVGEAGSVAEAL-----ACATRHQPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      D+ R +     D           +   ++    +         + + 
Sbjct: 56  VVIDVRLPDGSGLDVARELRRQRPD--------VGIVVLTMYAGDEQLFGALEAGASAFV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +       +         +  ++     +    LA                  +LT RE 
Sbjct: 108 AKDAPAEDVVSA-----ARHALVSPRS-FSAADLAGAMRRRMNPSGP------QLTPRER 155

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G     IA  L IS +T   +++ +  K     R+ A+  A+R  ++
Sbjct: 156 EVLQLMADGLGVSAIARQLFISESTTKTHVSKLYEKLGAANRAQALMAAIRLGLL 210


>gi|307131220|ref|YP_003883236.1| DNA-binding response regulator, LuxR family, near polyamine
           transporter [Dickeya dadantii 3937]
 gi|306528749|gb|ADM98679.1| DNA-binding response regulator, LuxR family, near polyamine
           transporter [Dickeya dadantii 3937]
          Length = 213

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +    D L  +           ++                  
Sbjct: 5   IKLMIADDHVIMREGLKQIFALDDNLEVVAEAGTGSQVLAQLRE---------------S 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+  +             R   L   ++              
Sbjct: 50  QVDLLLLDMSMPGICGEELIIRIVAQ--------YPRLPILVLSMYSEPQIARRVLKSGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I      +I                  G++  LT
Sbjct: 102 LGYITKDKDPEALLSAIRRVAQGARYIDHSIAEQIV--------FADCQTRGDGRNELLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + +  +++G   + IA +L IS  TV+ + + +M K    T +  + YA+   ++
Sbjct: 154 SREHQIMVMLAQGLGVNAIAEMLAISNKTVSTHKSRLMEKMQFTTNADIVKYALSQRLI 212


>gi|300776299|ref|ZP_07086157.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300501809|gb|EFK32949.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 225

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 81/240 (33%), Gaps = 23/240 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q+ + L  +++     V  L +    ++  +  D    +   +  L++           
Sbjct: 3   SQIKVALIDDEQLILEGVKMLLSNEKNISVSLTADNGPDFIEDLGKLSKD---------- 52

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D      +D  +     F+LV  +        Y  L+            L   +     
Sbjct: 53  -DFPDIALIDVQMKPMNGFELVEILKEK-----YPDLKIIILSSHYKTSILGYMVKL--- 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +     +       + ++   G     +   +  +L  Y  N        +  + E
Sbjct: 104 GVSAFLPKNSNKKTFIEAITMVDKNGVFFTAE---DHQMLFTY-MNSSAKKKSLFETEDE 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  I +  T++EI   L IS  TV ++   I+ K   K   G + YA+ NNI
Sbjct: 160 LSEREKDVVKLICQELTNNEIGEKLFISPRTVESHRQRILEKIGAKNTVGIVIYAIVNNI 219


>gi|227495872|ref|ZP_03926183.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834549|gb|EEH66932.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 217

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 36/234 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +QV +++  + E     ++ +  R+D L  +           R                 
Sbjct: 8   EQVRVMIVDDHEIVRRGIAEIIDRADDLDVVAEAGSRAEAVRRAE--------------- 52

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +++  +  +        ++    +    F            
Sbjct: 53  LVRPDVVLVDLQLPDGTGIEVMNDLRET--------VREALPIVLTSFDDDEALAEALEA 104

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y   T   A I   +  +     ++    +              +    H     +
Sbjct: 105 GARAYLLKTVHGAEISDVVRAVAAGRVLLDERTVT-------------RRRADHDDPTAD 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT  E + L  I +G ++ EI   LG++  TV N+I +++ K   + R+   A+
Sbjct: 152 LTNAERKVLELIGDGLSNREIGERLGVAEKTVKNHITALLAKMGLQRRTQVAAW 205


>gi|167574470|ref|ZP_02367344.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 228

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 21/239 (8%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           ++Q  N+V+NR+ E+     SH  TR  +   +      +               +  + 
Sbjct: 3   KLQDFNMVVNRKCERALIVDSHPITRDGIEIVLRNAFANIDVLG-----------TSDMA 51

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +  +  K D ++           + +         ++           +        
Sbjct: 52  KAGNSCRLAKPDLVLMDLMLPGAAPLIEMRRILGELPDVKFVVFTAL---KSEARAADAI 108

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y         +   +         I          L   + +         G  
Sbjct: 109 RHGASGYVLKWCQPDDMVRAVERALSGSIYIDPS-------LDEAKISSILDSRAPSGFA 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ELT RE + L  I +G    EIA +L IS  TV+ Y   +M+K      +  I ++ +
Sbjct: 162 DELTRREKQVLELIIDGARRREIASLLNISPRTVDCYRQRLMQKLGAHNVADVIHWSYK 220


>gi|332142526|ref|YP_004428264.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552548|gb|AEA99266.1| DNA-binding response regulator, LuxR family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 205

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 68/246 (27%), Gaps = 41/246 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN ++    I++  +       ++ L +  D L  +            +           
Sbjct: 1   MNSKV--TTILIVEDQSLVRDAIAMLLSLEDDLTVVDKYSNGQEAINYLNE--------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      DL   +A                +    F       
Sbjct: 50  -----HPAPDIILSDIEMPLVSGLDLAAHIANGSLS--------TKMVLMTTFSKPGYIK 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              +     +     D   +   +  +    ++I      E+ ++A              
Sbjct: 97  RALSLGVKGFILKESDSDYLIKAIHDVSAGKKVIS----TELAIMAL------------- 139

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  L+ +E+  L   SEG  + +IA  L +S  TV NY++  + K     R  A   A
Sbjct: 140 DDNNPLSKKEMSALKLASEGLKTQDIARSLFLSEGTVRNYLSEAISKLDATNRVDAARIA 199

Query: 241 VRNNIV 246
            +   +
Sbjct: 200 KQKGWL 205


>gi|196041201|ref|ZP_03108496.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
 gi|196027909|gb|EDX66521.1| DNA-binding response regulator, LuxR family [Bacillus cereus
           NVH0597-99]
          Length = 212

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +                 L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------ETKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++       +  + ++ L       M    D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNG-----QTVMQDVVLDKIKCNLMGSKEDECKIDKSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTGLEHRTQIAIY 205


>gi|113955465|ref|YP_731403.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882816|gb|ABI47774.1| possible DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 243

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIP----LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           Q  S   H   R    A        L   + W   +  L          L R    +   
Sbjct: 11  QTRSRQGHSLLRGSRTAIASGDRVLLASWIGWFQELGHLVAAATTEEDCLQRLQKDEVNL 70

Query: 74  LDSI--VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           L     +       LVR             L+    +  P+  T+ + I  P    +  C
Sbjct: 71  LICTDQLEGGNGPSLVRRAKQDH-----PTLKALLLVQRPILRTILQAIDAP---CDGLC 122

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S            +       +     + +            +          ELT +E 
Sbjct: 123 SHQNVGMGGVSAALTAMESDGMYHDSVIAD-------VLRHGRLGRALGSIPPELTLKEE 175

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  +  G ++ EIA  L +S +TV ++IAS++RK     R+ A+  A +  ++
Sbjct: 176 DVLRGLCRGMSNQEIADSLVVSIDTVKSHIASLLRKLQANNRTHAVVVAFQQGLI 230


>gi|119026058|ref|YP_909903.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765642|dbj|BAF39821.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 234

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +     P     L+ ++    T        A T   G         D      +D  
Sbjct: 1   MRVAIADDDPIVCSSLSTILEATGTADV-----AWTANTGTDAVTQYEMDAPDVLLVDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +  +           L    F                Y     DV
Sbjct: 56  MPGMDGLQASEAILDAHPN--------ARILILTTFADESYIAKALEIGTKGYLIK-QDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL---------------------LAAYQANMFKSY 176
           + +   +  +     ++  + L ++ +                       A Q +     
Sbjct: 107 SSVIPAVQAVMAGQVVMGAEVLSKLRVSPQSTTSDESSSVDRVVSHDDAQAVQGSRNPDS 166

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   LT RE++ L  ++EG  + EIA  L +S  TV N I+ I+ KT    R+  
Sbjct: 167 SGPSERFAGLTERELDVLELVAEGLDNREIASRLFLSEGTVRNRISDILAKTNISNRTKL 226

Query: 237 IA 238
             
Sbjct: 227 AV 228


>gi|84684327|ref|ZP_01012229.1| DNA-binding response regulator, LuxR family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668080|gb|EAQ14548.1| DNA-binding response regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 225

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +       +LT  +      +          LD  +   
Sbjct: 8   IVDDHPLFCDALAMTLQAVGGIRSVTTAGSLTAAM----AEVEGGASVDLIVLDLNLPDV 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +           +             +           + +          R
Sbjct: 64  DGLDGLIRLRK------AAGVPVLVVSSMADNRMISAVTES---GASGFVPKHSPRDVFR 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G+ +    +           +  +  D    +   LT ++   L  I EGK
Sbjct: 115 AAIDTIRADGQYLPDGYVTPQKTE----ESGPRRGDDAATRIATLTNQQARILQLICEGK 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A  
Sbjct: 171 LNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKE 211


>gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 209

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 65/223 (29%), Gaps = 20/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L  +++    +  + E   G     ++R        +D  +     
Sbjct: 6   RILIVEDHAFTRDGLRASLNLEADLRVVAEARSGEEALEVLRGQAADVAIVDIGLPGMDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +         E     A   + YC  +     + + 
Sbjct: 66  IQAARELKRRW--------PELRIVMLTAHDLREEVFASLASGADAYCLKSARPDLLLLA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +               A+              LT RE++ L  I++G  +
Sbjct: 118 VRAAAAGSAYLDP-----------QVAHHVLGGVRAPDAGAPLTPRELDVLRLIADGLAN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS +TV  ++  I+ K     R+ A   A+R  ++
Sbjct: 167 KEIAAALEISVSTVKLHVQEILVKLQAADRTQAAVKALRAGLL 209


>gi|307726626|ref|YP_003909839.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587151|gb|ADN60548.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 202

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 66/228 (28%), Gaps = 29/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +   P     +A ++  D  +             G     +V  +      +D  +
Sbjct: 3   RIVIIDDHPIIRGTIANVLRADPELDLVGECG-----DGEDGLQMVLREKPDLVIVDLDL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  ++R +          VL    E     +              N Y     +++
Sbjct: 58  PRLDGLSMIRRIREENLKICILVLSAKPEDVMAGYTRT--------AGANGYVGKGRNMS 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +         D                            L+ REVE L  ++
Sbjct: 110 ELITALKTVLFGYDCFPADAT----------------GSAPENALSALSAREVEVLQHLA 153

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ +IA  L +S  TV+ Y + I  K    + +  I +A  + ++
Sbjct: 154 RGASNRDIASRLFLSDKTVSTYKSRIQEKLGLSSLAALIEFASLHKLI 201


>gi|325286907|ref|YP_004262697.1| LuxR family two component transcriptional regulator [Cellulophaga
           lytica DSM 7489]
 gi|324322361|gb|ADY29826.1| two component transcriptional regulator, LuxR family [Cellulophaga
           lytica DSM 7489]
          Length = 209

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 33/233 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +          ++ + +       +     +     ++                   
Sbjct: 3   TVFIADSHPVVQVGITQMLSIETGFKVIGTARTSSELFEKLE------------------ 44

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
              +  D ++      ++     L +  K +  ++                I+       
Sbjct: 45  --NETPDILMLEMDFPEINGIACLRKMKKNHPDVKVLMYSGQS---EDVYAISSIRAGAQ 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LT 187
            Y S   D+  I   L  +      I  +    +          F        + F  L+
Sbjct: 100 GYLSKNADLDYIVAALEKISDGKMFITNELAQRLA---------FDEGTQKPRRLFRKLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE+E L  ++ GK + ++A+ LG++  T++ Y A +M+K         +  A
Sbjct: 151 TREIEVLKMLASGKRNKDVALGLGLNEKTISTYKARLMKKLNVDNMVDLLQQA 203


>gi|126347584|emb|CAJ89296.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 225

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 64/242 (26%), Gaps = 26/242 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E + V +V+  +++     +  +      L  +                    G + 
Sbjct: 1   MDSERKPVRVVIVDDEQLVRMALRLVIDGEPDLTVVGEAAD---------------GDAA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +V         +D  +         R +                 L    F +    +
Sbjct: 46  ITVVDEQRPDVVLMDVRMPGRDGLSAARELLTRPAPP--------RVLMLTTFDSDDLVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYD 177
                    +       A+I   +  +      +       +   A           S +
Sbjct: 98  GALRAGALGFVLKDTRPAQILDAVRAVADGVPALSPAATARVIAAATGPQSAHARGSSRE 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE E    I++G  + EIA  L IS  TV  +  S+  K   + R    
Sbjct: 158 AARKRLSALTERERETARAIADGLGNPEIAQRLRISVATVKAHTGSLFAKLEVENRVQIA 217

Query: 238 AY 239
             
Sbjct: 218 LL 219


>gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 243

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 16/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLV 87
           D +AR+     T +    M      +G    ++          E   +         +  
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAVRLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGR 69

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHT-----LPENIT-------PPAGMDNRYCSLTF 135
                     +  V +   EL  P F +      P  +           G  N      F
Sbjct: 70  SAQERDAYLLHCPVTRHILELDEPFFWSKSPSEDPARMAYRIVRGVRDLGQVNGMQVPVF 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
               +   +     +  +    +L            + +        D + L+ RE E L
Sbjct: 130 GRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSSGDAQALSEREREVL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 190 QWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426]
 gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 549

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 23  VSHLPTRSDLLARMIPL----DCTVSWTMRMYALTEYVGASHFLLVRWDLFQ------EQ 72
           +     R  +L  +                M      +    F+ V W          E 
Sbjct: 322 MDRHLMRLSMLMEIGRAMRMVQNEEEIIRMMAEFAAELAYGDFVCVVWSSDGQTAVVHEG 381

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  ++  +  D+ R      +     V          V            G+   +  
Sbjct: 382 AMDVEMAVRYRDDVCRRYGCHGEKAKSEVPALLDVEGKSVMEVPFFVGDGRYGVLAVHIK 441

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              +     + +  L   G +          +++                  +LT RE++
Sbjct: 442 KGREAKEAEVYMTALAAIGAM----------MISGKAHGGNDGTVNIDMLSEQLTAREMD 491

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  + +G ++ EI+  L IS +TV N+I +I +K     RS  IA   + N
Sbjct: 492 VLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLN 543


>gi|220932886|ref|YP_002509794.1| regulatory protein LuxR [Halothermothrix orenii H 168]
 gi|219994196|gb|ACL70799.1| regulatory protein LuxR [Halothermothrix orenii H 168]
          Length = 887

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                      Y     D   +   +  L  + + +    +  I        +  KS   
Sbjct: 758 VEAVKLARPEGYTRAFLDEGEV---IYKLLSEVKDVSPAFITGI----LEAFDFKKSTFN 810

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +      L+ RE+E L  I  G ++ EIA  L I+  T   +I++I  K     R+ AI 
Sbjct: 811 NQNLIEPLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIK 870

Query: 239 YAVRNNIV 246
            A++  ++
Sbjct: 871 KALQLELI 878


>gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 243

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 16/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLV 87
           D +AR+     T +    M      +G    ++          E   +         +  
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGR 69

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTF 135
                     +  V +   EL  P F +   +  P              G  N      F
Sbjct: 70  SAQERDAYLLHCPVTRHILELDEPFFWSKSPSEDPERMTYRIVRGVRDLGQVNGMQVPVF 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
               +   +     +  +    +L            + +        D + L+ RE E L
Sbjct: 130 GRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 190 QWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 202

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 68/230 (29%), Gaps = 30/230 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + LA ++ L+  +     + +     G +     R        LD  
Sbjct: 2   IRVLLAEDQHIIREALAALLGLEEDIEVVATVDS-----GTAAVDAARVYEPDIAVLDID 56

Query: 78  VSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +       +    +           +     L    +              + +   T  
Sbjct: 57  MPGTMDGLEAAAVVREK--------VPGCRVLMLTAYGKPGHLRRALGARVDGFVLKTAP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +    R++          LA                D  LT REVE L  
Sbjct: 109 PDDLVSAIRKVAVGERVLDASLAVTAWDLA----------------DNPLTPREVEVLRL 152

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  + EIA  + ++  TV NY+ +I+ K   + R+ A+  A     +
Sbjct: 153 VAQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIATEAGWI 202


>gi|311739386|ref|ZP_07713221.1| DNA-binding response regulator [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305202|gb|EFQ81270.1| DNA-binding response regulator [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 202

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 61/231 (26%), Gaps = 31/231 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R             L  ++  +  +S         E  G     LV         LD
Sbjct: 3   DPIRVLIAEDQSLVRGALVALLDTEPDISVVAECATGAEVAG-----LVAKHGVDVALLD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      D    +  +              L    F                +     
Sbjct: 58  IEMPVKNGLDAAAELEGTG----------CRSLIVTTFGRSGYVKRALETGVAGFVVKDT 107

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++   +  +    ++I      E                  +  D  LT RE E   
Sbjct: 108 PPEQLAEAIRRVHAGLKVIDPALAQE----------------TIFTPDNPLTTREKEVTR 151

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EG  + +IA  L +S  TV N ++S++ KT T  R  A   A     +
Sbjct: 152 HVLEGSDTRQIAGHLHLSTGTVRNIVSSLIAKTGTGNRYEAATTAHARGWI 202


>gi|139439378|ref|ZP_01772819.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
 gi|133775157|gb|EBA38977.1| Hypothetical protein COLAER_01838 [Collinsella aerofaciens ATCC
           25986]
          Length = 209

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 58/192 (30%), Gaps = 13/192 (6%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           T   G     L          LD  +         R +   +             +F   
Sbjct: 31  TGANGDDAVTLYAEHAPDIALLDIQMPGRDGLSAAREILERD--------PSARVVFLTT 82

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F      ++        Y   T DVA I   L  +    RI+    + +I          
Sbjct: 83  FSDDEYIVSALKLGARGYLIKT-DVAAIPPALAQVMDGKRILEGKAIEDIDFDGTGVEAG 141

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                  +     LT RE E    I+ G  + EIA    +   TV N+I+SI+ K   + 
Sbjct: 142 TPRRPAAFAS---LTDREFEVAELIARGLDNKEIAATAYMGEGTVRNHISSILAKMGLRN 198

Query: 233 RSGAIAYAVRNN 244
           R+  IA A    
Sbjct: 199 RTQ-IAIAYLRG 209


>gi|56697226|ref|YP_167591.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56678963|gb|AAV95629.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 220

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 11/222 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D                  ++     GA         L  +  +D I+    
Sbjct: 1   MTVVLIVDDHHLIRAGAKN---LLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVN 57

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D      L    ++                             + +   + D   +  
Sbjct: 58  LPDAEAIDGLVRLKRFDPSNAVALISGET---DHELIRAALEAGADGFIPKSADPQVLIH 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + L+      + R  L          A +    D     +  LT R+ +    + +G  
Sbjct: 115 AVSLILEGEIFLPRSYLQ-----GGRMAEVATPLDSSERPEQNLTPRQRDVFELMCKGLA 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA +L +S +TV +++++I ++  T +RS  IA   +  
Sbjct: 170 NKEIARLLDLSESTVKSHVSAIFKQIGTTSRSKTIAIFRQEG 211


>gi|331002765|ref|ZP_08326280.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330407178|gb|EGG86682.1| hypothetical protein HMPREF0491_01142 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 215

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 24/225 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               +   P     L  +I L      T++   + E +      +          +D  +
Sbjct: 1   MVLVLDDHPIARQGLESIIKLHKPEEETLQAGTVREAID-----ITENRPIDTVFVDLNL 55

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
            ++  FD +  +            +           +  + +       + Y      + 
Sbjct: 56  HNESGFDFLEWIQKQN--------KSVKTFVITSSSSESDFVKAKKLGIDAYVLKDAFID 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   + ++   G+    D L  +G           +      K   LT RE+E +  + 
Sbjct: 108 DIMYSIKVVDRGGKFYSADLLENLG-----------NTSEEEKKIETLTKRELEVVLLLK 156

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EG ++ +IA  L +S  TV  ++++I  K    +R+  + +  RN
Sbjct: 157 EGYSNAKIAEELFVSEGTVKKHLSNIFGKLQLYSRTEVLVFVERN 201


>gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 201

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +        L +  + +  +   +   +    +  L               
Sbjct: 2   IRIVIAEDQQMLRGAFKSLLSFEEDMEVVAEAEDGEAAWEAIVRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++   +  S              +    F              
Sbjct: 47  EPDVCLLDIEIPVLTGLEVAERLKRSGNP--------GKVIIVTTFARPGYLQKAMDLKL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +    R+I +D    + L                 +D  LT
Sbjct: 99  EGYLLKDEPIEFLIDAIRRVMAGERVISKDLAEVLFL----------------KEDNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L     G+++ EIA  L ++  TV NY++  ++K   +TR  A   A     +
Sbjct: 143 ERETEVLRLSHAGRSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERAKERGWI 201


>gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           thermophilus ND03]
          Length = 200

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 73/239 (30%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    D +  +                    G     L+  +
Sbjct: 1   MKLLVAEDQSMLRDALCQLLMLEDDVEEVHVASD---------------GQEAIALLEKE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +  ++        +    +    F          A   
Sbjct: 46  EVDVAILDIEMPVKTGLDVLEWIRANQ--------RETKVVIVTTFKRKGYFKRALAAQV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      ++ +   +  +    +    + +  +                    +  L+
Sbjct: 98  DAYVLKERSISDLMATIHTVLAGQKEYSPELVEGVAF-----------------DNNPLS 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +++G T+ EIA  L +S  T+ NY+ +I+ K     R+ A+  A   + +
Sbjct: 141 QREQEVLAMVAQGSTNQEIAESLFLSNGTIRNYMTAILTKLDAGNRTDAVRIAKEKDWL 199


>gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 557

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE++ L  + +G ++ EIA  L IS +TV N+I +I +K     RS  IA   +
Sbjct: 486 SERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQ 545

Query: 243 NN 244
            N
Sbjct: 546 LN 547


>gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 557

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE++ L  + +G ++ EIA  L IS +TV N+I +I +K     RS  IA   +
Sbjct: 486 SERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIALVYQ 545

Query: 243 NN 244
            N
Sbjct: 546 LN 547


>gi|254254816|ref|ZP_04948133.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
 gi|124899461|gb|EAY71304.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
          Length = 214

 Score = 97.3 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 56/227 (24%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +             A           L          +D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLALMDV 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++      L                     L   +   +           + Y      
Sbjct: 64  GMNGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASAAASPLDRLTPRERDILDA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|302548874|ref|ZP_07301216.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466492|gb|EFL29585.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 225

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 65/242 (26%), Gaps = 26/242 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E + V +V+  +++     +  +      L  +                    G + 
Sbjct: 1   MDGEREPVRVVIVDDEQLVRMALRLVIDGEQDLTVVAEAAD---------------GDAA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +V         +D  +         R +                 L    F +    +
Sbjct: 46  ITVVDEQRPDVVLMDVRMPGRDGLSATRELLTRPAPP--------RVLMLTTFDSDDLVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYD 177
                    +        +I   +  +     ++       +   A           S +
Sbjct: 98  GALRAGALGFVLKDTQPPQILDAVRTVADGNPVLSPAATARVIAAATGPQSAHARSSSRE 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE+E    I++G  + EIA  L IS  TV  +  S+  K   + R    
Sbjct: 158 AAREQLSALTERELETARAIADGLGNPEIAQRLRISIATVKAHTGSLFAKLTVENRVQIA 217

Query: 238 AY 239
             
Sbjct: 218 LL 219


>gi|241763642|ref|ZP_04761692.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241367117|gb|EER61483.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 209

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
           H+    D       +  T++    +    E  G +    ++R        LD  +     
Sbjct: 3   HVVLCDDHAMLRRGIRDTLAEAPDIQVTAEAGGYAELREVLRTAPCDVLLLDLNMPGRSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +++  +  +        ++       P        +         Y +   D   +   
Sbjct: 63  LEVLASVRETH-----AAIKVLVVSMYP---EDQYALRCLRAGAQGYANKASDPVELIAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L    + + ++    +            +          L+ RE++ L  I+ G+  
Sbjct: 115 VRTLVQGRKYLTQEVAQMLA--------ESLAQPEPEAPHAALSERELQTLIKIASGRKL 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV+ Y + ++ K      +    YA+RN +V
Sbjct: 167 SDIAEELMLSPKTVSVYRSRVLEKLKLSNNAELTVYAIRNELV 209


>gi|119468892|ref|ZP_01611917.1| DNA-binding response regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
 gi|119447544|gb|EAW28811.1| DNA-binding response regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
          Length = 219

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 33/232 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       +S + T S   + ++           +              +   
Sbjct: 5   TKIIIADDHPLFRQALSLMLTSSFTDSSLLEAQTIAELEQAL--------------IDTP 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F+ +  + L        V+    E    +               
Sbjct: 51  EIDLILLDLDIPGAEGFNTLNSIRLK-YPHIAVVVISGFEESETIN-------KAIEFGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   +  V  +   L  +      +             Y        D    K   LT
Sbjct: 103 AGFIPKSTPVNDMVAALNSIINGELWVPS-----------YALKQGAQQDKEESKISTLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++ + L  +++G  + +IA  L +S +T+ +++++I  K   K R+ A+  
Sbjct: 152 NQQRKILFMLADGLLNKQIAYDLNLSESTIKSHVSTIFLKLGVKNRTQAVIL 203


>gi|116695031|ref|YP_840607.1| response regulator [Ralstonia eutropha H16]
 gi|113529530|emb|CAJ95877.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 208

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 72/224 (32%), Gaps = 20/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D     + L    S  + +  + E   G +   +VR        LD  +   
Sbjct: 1   MTTILIVDDHPPVRVVLKTHFSQVLGITHVLEADNGQAAIEIVRQYTPDVVILDLDIPKI 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +           ++             P          + + S T ++A I 
Sbjct: 61  NGLDVIPRLKACH-----PAVRILVISGQDQNTFAPRAR---QAGAHGFVSKTQELAEIV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                +     ++           A +     +           L+ +E+  +  +++G 
Sbjct: 113 RCTESVLAGYTVMPETDRGN---NAGHADEAARLAS--------LSDKELVVMQMLAKGM 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EI   L IS  TV+ +    M K   K+    I +A R++I
Sbjct: 162 SNKEIGETLFISNKTVSTHKTRAMEKLGAKSIVDVIDFARRHHI 205


>gi|226945892|ref|YP_002800965.1| Response regulator, LuxR family [Azotobacter vinelandii DJ]
 gi|226720819|gb|ACO79990.1| Response regulator, LuxR family [Azotobacter vinelandii DJ]
          Length = 215

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 13/215 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D    +       + T+ +  +   V A     +   L ++   D ++      
Sbjct: 5   EILIADDHP--LFRSALQQALTLGLGPVVRLVEADSIAALEVRLEEKADWDLVLLDLNMP 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                  L      Y  +                         + +   +  +  ++  +
Sbjct: 63  GAHGFSGLVLLRGQYPQIPVVMISAQ---EDAAVVARAREFGASGFIPKSSPLETLQQAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +                      A++             LT ++   L+ + +G  + 
Sbjct: 120 RAVLDGDEWWPPQI--------QETASVSAEAKAASAGLASLTPQQFRVLSMVCDGLLNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +IA  L +S  TV  ++ +I RK   +TR+ A   
Sbjct: 172 QIAYELNVSEATVKAHVTAIFRKLGVRTRTQAALL 206


>gi|332296384|ref|YP_004438307.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179487|gb|AEE15176.1| two component transcriptional regulator, LuxR family
           [Thermodesulfobium narugense DSM 14796]
          Length = 232

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 72/249 (28%), Gaps = 36/249 (14%)

Query: 1   MNFEIQQV--NIVLNREDEQRTSFVSHLPTRS-DLLARMIPLDCTVSWTMRMYALTEYVG 57
           M+    Q    ++L  +     + +  L     +    +           ++  +     
Sbjct: 1   MSKSPSQSPKTMILVDDHAILRAGLKALIQEHQEEFNVVEEASNGAEAIDKIKKI----- 55

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
                           LD  +      DL+  +     +           L   +F    
Sbjct: 56  ----------KPDIVLLDISLPDISGLDLIDSIKKWSSN--------TKILILSMFEDET 97

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +       N +         +   L  +     + +   L +  L             
Sbjct: 98  LIVKALKMGANGFIPKRLAYEELIEALKTVSKAEDVYIPSCLAKTVL----------RGM 147

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++  K  +L+ RE + L + + G  + E+A  L +S  T+  Y   I  K   + +S  +
Sbjct: 148 LNKDKKTKLSTRESQVLRYTALGYGNKEMAKKLNLSVKTIETYKLRISEKINAQKKSDLV 207

Query: 238 AYAVRNNIV 246
            YA++  ++
Sbjct: 208 KYAIKEGLL 216


>gi|322386825|ref|ZP_08060449.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321269107|gb|EFX52043.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 199

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S L      +A +                    G     L++ +
Sbjct: 1   MKILLAEDQSMLRDALSQLLQLQPDVASVSQAAD---------------GREAIELLKTN 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +   +             +    F              
Sbjct: 46  PVDVAILDVEMPYQTGLDVLEWVKEHQ--------PAVKVIIVTTFKRPGYFERAVKADV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +A +   +  +    +    + +  +                       L+
Sbjct: 98  DAYVLKERSIADLMKTIHTVLAGQKEYSPELMEVLMT-----------------HKNPLS 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+  L   + G ++ EIA  L +S  T+ NY+++I+ K A   R+ A+  A     +
Sbjct: 141 HQELLVLEAAATGLSNKEIAEKLYLSNGTIRNYMSTILTKLAADNRTEAVRIAQEQGWI 199


>gi|260459364|ref|ZP_05807619.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034918|gb|EEW36174.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 219

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 21/221 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR----WDLFQEQKLDSIVSSDWPF 84
            SD  + +  +D  VS    +  L    G             D  Q   + S +  D   
Sbjct: 14  MSDEASVVFIVDDDVSVRESLELLICSSGWRPQTFGSAKDFLDRPQMALVSSCLILDVNL 73

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  + L               +F   +  +P  +         + +  FD   +   +
Sbjct: 74  PDLSGLDLQSLMANERT--PMPIIFITGYGDVPMTVKAMKAGAIEFLTKPFDDEELLSAI 131

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L   +               +     +   +     +   L+ RE E +T +  G  + 
Sbjct: 132 KLALER---------------SKSALALDSEFQALKDRHTSLSRREQEVMTLVVSGLLNK 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +I   LGIS  TV  +    MRK   ++ +  +  A R  I
Sbjct: 177 QIGFELGISEITVKAHRGQAMRKMQARSLAQLVHMAARLGI 217


>gi|312112563|ref|YP_003990879.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217664|gb|ADP76268.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y4.1MC1]
          Length = 185

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 28/180 (15%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +D   +  + +  +              +    +             
Sbjct: 33  HNPDVIVMDIRMKNDNGIEWTKKITETYPT--------CKVVILSGYDYDEYIHAAYEAG 84

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              + +       +   +                    + ++ A+              L
Sbjct: 85  AYAFVTKENSAFELANAIRQSHLG--------------IKSFPADRLS------NYHPPL 124

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK    +R GA+  A++  I+
Sbjct: 125 TKVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVGAVVKAMKLGIL 184


>gi|255038541|ref|YP_003089162.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254951297|gb|ACT95997.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 206

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 60/230 (26%), Gaps = 29/230 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  +         HL       + +  +D        +                   +
Sbjct: 4   ILIAEDHAVVRIGTKHLLKSLIPDSTISDVDDFDKILQELET---------------KAY 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +       +V  +           ++         +      +       + 
Sbjct: 49  DLLILDINIPGGNTTKMVETIRTK-----SPGIRILMFSS---YDEQLYGLMYLQAGADG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y S        +  +M +    + +  D      +       +    +        L+ R
Sbjct: 101 YLSKDAPEEEFKTAVMSVLNNKKYMSED------MQQMNINRLINPKEYMPDPIVSLSPR 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E + +  + EG  + +IA  L +  +TV+ Y A I  K   K     I  
Sbjct: 155 ETDVMNLLKEGLGTAKIAEKLNLQLSTVSTYKARIFEKLGVKNIVELITK 204


>gi|167902027|ref|ZP_02489232.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 279

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +       ++      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLIVV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
             S T     I   L ++   G  +    L      A  + +  ++      +       
Sbjct: 98  VISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDSRVEAIVSQLPRRKRSPCS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|166031115|ref|ZP_02233944.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
 gi|166028962|gb|EDR47719.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC
           27755]
          Length = 207

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 31/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +D   +  +  +  +   +  +  +                 G     L R  
Sbjct: 1   MRIVIADDDMLVSGALRTILEKDQDI-EVQGIASN--------------GKEAIELYRKY 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +S     +    +   +             L    F      +       
Sbjct: 46  EPDVLLMDIRMSPMSGLEASEEILKEK--------PEAKILLLTTFSDDEYIVKALKCGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D A I   +  +     +     +  +  L        +         +E+T
Sbjct: 98  KGYLLK-QDYASILPAIRAVCTGQTVFGTQIISRLPEL-------LERKSAFDYATYEIT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   +  +++GK++ EIA  + +S  T+ NYI+ I+ K   + R+    + +RN
Sbjct: 150 EKERAVMKLVADGKSNKEIAGEMFLSEGTIRNYISGILDKLNLRDRTQLAVFYLRN 205


>gi|256850848|ref|ZP_05556237.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260661059|ref|ZP_05861973.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|282934481|ref|ZP_06339736.1| two-component response regulator [Lactobacillus jensenii 208-1]
 gi|297205722|ref|ZP_06923117.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii
           JV-V16]
 gi|256615910|gb|EEU21098.1| two-component system response regulator [Lactobacillus jensenii
           27-2-CHN]
 gi|260547996|gb|EEX23972.1| two-component system response regulator [Lactobacillus jensenii
           115-3-CHN]
 gi|281301428|gb|EFA93717.1| two-component response regulator [Lactobacillus jensenii 208-1]
 gi|297148848|gb|EFH29146.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii
           JV-V16]
          Length = 201

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             + L  + E   S +  L    D    +           ++  L               
Sbjct: 2   TRLFLAEDQELLNSALKMLLDLEDDFEVVGTSLTGEDVANKIITL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +  +   ++ + +                 +    F          A   
Sbjct: 47  KVEVALLDIEMPKESGLEIAKELREQNYP--------GKIIILTTFARANYFKEALAQKV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     +     +                  V    D  LT
Sbjct: 99  DGYLLKDSPSDSLVKAIRAILDGNTVFDPKLV----------------SGVLNEVDNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  + +  T+ E+A  L +S  TV NYI+SI+ KT T +R  A+  A     +
Sbjct: 143 NREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSILSKTGTSSRLEALNLARNKGWI 201


>gi|154509006|ref|ZP_02044648.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798640|gb|EDN81060.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC
           17982]
          Length = 204

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 36/229 (15%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  + E     ++ +  R D L  +  +        R                      
Sbjct: 1   MIIDDHEIVRRGIAEIVDRDDALEVVAEVGSVADAVRR---------------ADLVRPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D++  +  S   +   V+          F                Y
Sbjct: 46  VILVDLQLPDGTGIDIMNRLRSS-HPQILPVV-------LTSFDDDEALAESLEAGARAY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T   A I   +  +     ++    L              +    H     +LT  E
Sbjct: 98  ILKTVRGAEITDVIKAVADGRVLLDERTLT-------------RRRVDHEDPTADLTPSE 144

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 145 RKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 193


>gi|149278558|ref|ZP_01884694.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149230553|gb|EDM35936.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 214

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  L T    L  +                         LL    
Sbjct: 2   IRLILADDHLLVRNGIKLLLTEDTELDVVAEALNGQEVLD--------------LLDDGL 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L+  +                 +F  +               
Sbjct: 48  SADILLLDMNMPVMDGIALLPIVREK--------YPLLKVIFLSMLDNPEVVFNTIKKGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   +   +  +   GR +  +  ++  +L    +        H   DF  T
Sbjct: 100 SAYLFKNVNAMELLFAVKYVHDGGRYLCSEIQFK--MLEQKSSERVNPASNHNADDF--T 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G T+ EIA  L +S+ TV  +   ++ KT ++  +  I  A    +V
Sbjct: 156 QREMEILQLIALGHTNSEIADKLFLSKRTVEGHRQLLLNKTQSRNSAHLIKTATVMGLV 214


>gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 201

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 67/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++      ++ L +  D +  +                    G       R  
Sbjct: 2   IKVLLADDENLIRGALAVLLSMEDDITVVAQAAS---------------GPEALATARLH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       + + +           L     +               A   
Sbjct: 47  RPDVALLDLQMPGLDGIAVAQALHAD--------LPACANVIVTSHGRPGYLRRALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T  V  +   + ++   GR +  +   E                     D  LT
Sbjct: 99  RGFLPKTVSVQVLADVVRVVHGGGRYVDPELAAE----------------AIAAGDSPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   + G   +EIA  L +SR TV NY++S + K     R  A+  A     +
Sbjct: 143 PREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRHEAVQLARVRGWI 201


>gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 202

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 66/223 (29%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D+      L   ++    +  + E   G +    V         +D  +     
Sbjct: 3   RILLAEDMHMVRGALVALLALESDLEVVAEVERGDTIVSKVLECRPDIAIIDVDLPGMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A                L               A     +       AR+   
Sbjct: 63  LSAASLLAEQ--------TPWCRTLILTSLGRPGTLRKALAARVGGFLLKEAPPARLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I          LA    +           +  LT REVE L   ++G  +
Sbjct: 115 VREVSAGKRVIDP-------QLALAAFD---------NGENPLTPREVEVLRMAADGAEA 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIAV L +S  TV NY+ +I+ K   + R  AI  A  +  +
Sbjct: 159 AEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESGWL 201


>gi|283778980|ref|YP_003369735.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283437433|gb|ADB15875.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 223

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 60/224 (26%), Gaps = 17/224 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   + LA  I     +        L E +      LV         +D 
Sbjct: 9   RARVLIVDDHPAVREALALRIGRQTDLEVCGEAADLGEAL-----RLVAETQPDVAVIDI 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            + +    DL++ +   +             L                     Y +    
Sbjct: 64  SLKTGCGIDLIKRIKDRQ--------DTVRMLVWSTHSESLYAERALLAGALGYITKDQA 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I  G+  +      +    +    +L        K           L  RE+E    
Sbjct: 116 TDTIVEGIRRVLEGKVYLSDAMVE--TMLRRTVGGEQKHLTR--SPLDTLANRELEVFRL 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           I +G+ +  IA  L +S  TV  Y   I +K    + +    YA
Sbjct: 172 IGQGEKTTGIAKRLHLSVKTVETYRDRIRQKLDLTSGTELAHYA 215


>gi|271965668|ref|YP_003339864.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508843|gb|ACZ87121.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 12/222 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G                +D  +     
Sbjct: 6   RVLVVDDDALVRAGLSMMLDGIHGIAVVGEAADGDEVPAAADAYAPDVVLMDLRMPRVDG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +    F      +         +       A+I   
Sbjct: 66  ITATRRLRSRRHPPE--------VVVLTTFDADENILHALRAGAAGFLLKDTPPAQIVEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     ++       +   AA QA  ++           L+ RE E +  ++ G+T+
Sbjct: 118 VRRVAAGDPVLSPRITRRLMDRAATQAGAYQRARAAL---ATLSPRENEVVLAVARGRTN 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIAV L +   TV  +++ I+ K     R+     A    +
Sbjct: 175 AEIAVELYMKVTTVKAHVSHILSKLELDNRTQIALLAHDAGL 216


>gi|89891291|ref|ZP_01202798.1| putative response regulator, luxR family [Flavobacteria bacterium
           BBFL7]
 gi|89516603|gb|EAS19263.1| putative response regulator, luxR family [Flavobacteria bacterium
           BBFL7]
          Length = 218

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 82/239 (34%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI L  ++      +S +  R      +           ++              V+  
Sbjct: 2   INIALADDESLFLDTLSFMLQRIPDFNVVFTATNGQDLVDQLT-------------VQNP 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L      D  +      +  + +         +V+   +         +           
Sbjct: 49  LPDVVVTDLKMPELNGVEATKKIKE--LYPKLSVIALSSYNTDVFISNMLGV------GA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A++ + +  +  KG    ++ L  +   +        + D +      L+
Sbjct: 101 ASYLVKNTTPAQVELTIREVASKGFYYDKNVLRILQDNSQDGNYKRSTLDHNL-----LS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I E  T+ EIA  L +S+ TV+ +  +++ KT  +  +G +AYA++N I+
Sbjct: 156 PRELDVLQLICEQFTTAEIADKLCVSKRTVDGHRNNLLIKTKMRNVAGLVAYAIQNAII 214


>gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
 gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719]
          Length = 243

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 73/230 (31%), Gaps = 16/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLV 87
           D +AR+     T +    M   +  +G    ++          E   +         +  
Sbjct: 10  DSVARLRKAATTEAVCREMVEFSARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAEGR 69

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTF 135
                     +  V +   EL  P F +   +  P              G  N      F
Sbjct: 70  SAQQRDAYLLHCPVTRHILELDEPFFWSKSPSEDPERMTYRIVRGVRDLGQVNGMQVPVF 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
               +   +     +  +    +L            + +        D + L+ RE E L
Sbjct: 130 GRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 190 QWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|154488827|ref|ZP_02029676.1| hypothetical protein BIFADO_02135 [Bifidobacterium adolescentis
           L2-32]
 gi|154082964|gb|EDN82009.1| hypothetical protein BIFADO_02135 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 67/242 (27%), Gaps = 35/242 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +     P     L+ ++    T        A T   G         D      +D  
Sbjct: 1   MRVAIADDDPIVCSSLSAILEATGTADV-----AWTANTGTDAVTQYEMDAPDVLLVDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +  +           L    F                Y     DV
Sbjct: 56  MPGMDGLQASEAILDAHPN--------ARILILTTFADESYIAKALEIGTKGYLIK-QDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGL---------------------LAAYQANMFKSY 176
           + +   +  +     ++  + L ++ +                       A Q +     
Sbjct: 107 SSVIPAVQAVMAGQVVMGAEVLSKLRVSPQSTTSDESSSVDRVVSHDDAQAVQGSRNPDS 166

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   LT RE++ L  ++EG  + EIA  L +S  TV N I+ I+ KT    R+  
Sbjct: 167 SGPSERFAGLTERELDVLELVAEGLDNREIASRLFLSEGTVRNRISDILAKTNISNRTKL 226

Query: 237 IA 238
             
Sbjct: 227 AV 228


>gi|294054526|ref|YP_003548184.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613859|gb|ADE54014.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 210

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 64/240 (26%), Gaps = 39/240 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++E     +      +D +  +   +  +        L               
Sbjct: 5   IGVLVVDDNEMMRRGLCEAINLADGMEAVGAAESAMEALQLFREL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +        +            +        VF    +         
Sbjct: 50  KPDVVTMDYQMPGENGLKCTERILAE-----DPEAKVVLIS---VFDLEEDVWNAVQCGV 101

Query: 128 NRYCSLTFDVAR-IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
             Y +     A  +   +  +                ++A       ++ D        L
Sbjct: 102 VGYLTKKAGNAEILIDAIREVAAGEEFFP-------AVIAKKLNRRKEAKD--------L 146

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE++ L  ++ G ++ EI   + ++   V  +I     K     R+ A+  A    I+
Sbjct: 147 TDRELKVLELLARGCSNKEIMDEMNLTLTMVKYHIVQTREKLGALDRTQAVVKAFERGIL 206


>gi|294626355|ref|ZP_06704957.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599356|gb|EFF43491.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 236

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 16/223 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +   +D    +  +   +     +  +     G +   +   +      +D ++    
Sbjct: 3   TRIVVAADRTILVEGMVALLQKVPGIEVVGHAEDGLACLQIAARERPDIVLVDVLLPGLN 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             DL R +     +           +         +           Y + T   A +  
Sbjct: 63  GIDLTRRLMQRSPN--------SRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLR 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      I       +           +           LT RE E +   SEG +
Sbjct: 115 AIQCVIQDQTYISPQMSRSLI-------AGLRRAAKADSAYTRLTSREREIVQLYSEGLS 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 168 TRQIANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|170726983|ref|YP_001761009.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169812330|gb|ACA86914.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 213

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 20/229 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             +   V   PT    LA++I L+  +    +  +     G     L          LD 
Sbjct: 3   RAQILLVDDHPTLRQGLAQLISLEDNLDVIAQAGS-----GDEAISLAIKHAPDLILLDL 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D +  +AL   +    ++         V  +  + +       + Y     +
Sbjct: 58  NMKGLSGIDTL--IALKRAEIDSKIV------IFTVSDSESDVLQAIKFNTDGYLLKDSE 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + L      +I          L    A   +           LT RE++ L  
Sbjct: 110 PEELIEKINLAIQGEFVIS-------APLTKILARSLRPESKASSPLENLTQRELQNLKL 162

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+ GK++ +IA  LGI+  TV  ++ ++++K   K+R  A  +AV + I
Sbjct: 163 IASGKSNKDIANTLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKI 211


>gi|300114081|ref|YP_003760656.1| LuxR family two component transcriptional regulator [Nitrosococcus
           watsonii C-113]
 gi|299540018|gb|ADJ28335.1| two component transcriptional regulator, LuxR family [Nitrosococcus
           watsonii C-113]
          Length = 209

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 60/212 (28%), Gaps = 29/212 (13%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR---------WDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  L    G                         LD  +     F+L   
Sbjct: 10  VDDDGAMRKSLALLLRGEGFDVKTYSSAQVFIESSPLSSTGCLLLDVRMPGIDGFELQNI 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           + L             + +       +P  +         +    F    +   +  +  
Sbjct: 70  LQLRGI--------HLSTIMITGHADVPMAVRAMKSGAKDFIEKPFRAQTLLDRIRKI-- 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               +  D   E            +    +  +   LT RE +    +++GK +  IA  
Sbjct: 120 ----LSVDETQETH------KEQSRLQPGNLSQFEFLTRRERQVFKLLAQGKMNKHIAAE 169

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L IS  TV  + A++M K   K+ +  +  A+
Sbjct: 170 LCISIRTVETHRANVMEKLKAKSLADIVRLAI 201


>gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 339

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 16/222 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V       ++L R+         T +     +  G    +L       + +      
Sbjct: 124 VDYVVKPLRIPEVLVRLATHVRNARATRQAQEAVDVAGLGVVVL-------DGQGRVAWR 176

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           S      +      +                P  H   +                   A 
Sbjct: 177 SPQASRWLEEAFADQPFPLEAAGDWLAGARQPDQHGKADQPGQADQEGQ--------PAP 228

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             + L L   +  +        +G  +        ++      +   LT RE E L+W+S
Sbjct: 229 QDLALALADGRQLLARHMGASGLGESMVLLSHEAPQTPAARRLQQVALTPRETEVLSWLS 288

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +GKT+ +IA ILG+S  TVN ++  I  K   +TR+ A A A
Sbjct: 289 KGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAAVA 330


>gi|78047210|ref|YP_363385.1| two-component LuxR family response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78035640|emb|CAJ23331.1| putative two-component response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 236

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 64/223 (28%), Gaps = 16/223 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +   +D    +  +   +     +  +     G +   +   +      +D ++    
Sbjct: 3   TRIVVAADRTILVEGMVALLQKVPGIEVVGHAEDGLACLQIAARERPDIVLVDVLLPGLN 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             DL R +     +           +         +           Y + T   A +  
Sbjct: 63  GIDLTRRLMQRSPN--------SRAICIAPSDACTQASAVFEAGAKAYLARTSRFAELLR 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      I       +           +           LT RE E +   SEG +
Sbjct: 115 AIQCVIQDQTYISPQMSRSLI-------AGLRRAAKADSAYTRLTSREREIVQLYSEGLS 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 168 TRQIANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 210


>gi|71275232|ref|ZP_00651519.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Dixon]
 gi|71899547|ref|ZP_00681703.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
 gi|170731227|ref|YP_001776660.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|71164041|gb|EAO13756.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Dixon]
 gi|71730676|gb|EAO32751.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
 gi|167966020|gb|ACA13030.1| response regulator receiver protein [Xylella fastidiosa M12]
          Length = 220

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 60/237 (25%), Gaps = 32/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +       +  + +    L  +   +   +   ++  L               
Sbjct: 3   IKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIREL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +          ++    +   P                
Sbjct: 48  RPNVVLCDMHLPGVSGLEITEKLVKGNYGSRVIIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L          S +        L+
Sbjct: 100 SGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVL---------SSLEGGCSPFDVLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E    + +G +   IA  L +S  T+N +   +  K   +        A++  
Sbjct: 151 PRELEIALLLIQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYG 207


>gi|332877914|ref|ZP_08445652.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684209|gb|EGJ57068.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 205

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDE 205
              +  +  L  +     +    +  + +           L+ RE+E LT I  G T+ E
Sbjct: 100 DSMVRALLQLQQHAHAHGRHLPQNMPRPYMTNTSPGDPNGLSTREIEVLTLIVRGLTNKE 159

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV ++  +IM K   ++ SG   YAV N  +
Sbjct: 160 IADRLCISTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 200


>gi|257141375|ref|ZP_05589637.1| transcription regulator [Burkholderia thailandensis E264]
          Length = 248

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 15/231 (6%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q+++++  + E   S +++   R   +A +     +      +      +  +  +L+ 
Sbjct: 13  EQLSVIMLDDHEVVLSGITYQLKRERDIAVLGTFSRSRQLFDYLAQHGPALAHTRPVLLI 72

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                 Q  D          L+R + +        +L     L   +             
Sbjct: 73  DYALGPQDTD-------GIALIRRLCVQ--FPVCPILVVSGHLQPSIVRLALM------A 117

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y      +  +   +  +    + +         L+      M +           
Sbjct: 118 GARGYIGKDCTLEELVDAIRRVASGEKYVHPSLAERDDLVPPAAIEMRRGDTGRATLASL 177

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE+E L    +G    +IA  L  S  T++    S  RK         
Sbjct: 178 LSPRELEVLRLTLQGFEVGQIAEKLSRSNKTISTQKRSAYRKLGISGDREL 228


>gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
 gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
          Length = 200

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 62/239 (25%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S L      +  +       +    +  L               
Sbjct: 2   IRILLAEDQAMVRGALSALLGLEPDIEVLGSAADGEAAWRMLQQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +A  E             +    F              
Sbjct: 47  KPDILVTDIEMPGLSGLELAQRIARHELPI--------KVVIVTTFARAGFLRRALEAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +    R I      +                  W +   LT
Sbjct: 99  LGYLLKDAPAENLADALRKVNQGIRAIDPQLALDA-----------------WSQADPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R  A   A +   +
Sbjct: 142 DRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 219

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  ++ ++  G+  +      + R  + ++    +Y      +       D ELT 
Sbjct: 107 GVFGAKDNIEKLCRGIEAIARGDNWLPRRLMMQLI---SYYEEKGGAKKEEPQLDIELTR 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L ++  G ++ EIA  L IS +T+ +++ +I RK   K R+ A A+A RN
Sbjct: 164 REIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 218


>gi|238792473|ref|ZP_04636106.1| Nitrate/nitrite response regulator protein narL [Yersinia
           intermedia ATCC 29909]
 gi|238728108|gb|EEQ19629.1| Nitrate/nitrite response regulator protein narL [Yersinia
           intermedia ATCC 29909]
          Length = 216

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 21/236 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ +D      +   P     + ++I +   +S            GA   +L        
Sbjct: 1   MSEQDAATILLIDDHPMLRHGIKQLISMAPGLSIAGEASN-----GAQGIILATNLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V     + I+      + Y 
Sbjct: 56  IMLDLNMPGMNGLETLDRLRQQPLSGRIVVF--------TVSDHQDDVISALKRGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
               D   + + L        ++    +  + +         +       +D   LT RE
Sbjct: 108 LKDMDPEDLLVSLYNAAAGQMVLSDALMSILAI-------NLRENRSDNERDINTLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  + ++  I+
Sbjct: 161 RDILKLIAKGLPNKTIARKLLIAESTVKVHVKHLLKKMKLKSRVEAAVWVLQEKIL 216


>gi|310830322|ref|YP_003965422.1| two component LuxR family transcriptional regulator
           [Ketogulonicigenium vulgare Y25]
 gi|308753228|gb|ADO44371.1| two component LuxR family transcriptional regulator
           [Ketogulonicigenium vulgare Y25]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 56/222 (25%), Gaps = 18/222 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P     L+  +     +            +      L R        LD  
Sbjct: 2   IRVLIVDDHPIFRSGLSLSLGESPDLQICGEADTAAAAL-----TLARDLRPDVVLLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L   +AL   +                     + +         Y       
Sbjct: 57  LPGGGLNVLPDLVALDGVN----------VAVLTASEACDDVMAAINTGARGYILKGIGG 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +      I          +        +           LT RE E L  +
Sbjct: 107 APLIDAVRSIAAGEGYITPTLAAR---ILTEIRVEERLSPQRSASLDLLTPREAEVLNMV 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + G ++ EIA +  +   TV +++  I+ K   + R+ A   
Sbjct: 164 AAGHSNKEIARLGDMQEKTVKHHMTRILHKLGARNRTEAALL 205


>gi|260778656|ref|ZP_05887548.1| two component transcriptional regulator LuxR family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604820|gb|EEX31115.1| two component transcriptional regulator LuxR family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 131

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 9/140 (6%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +         +         N Y       + +   +  +      +           
Sbjct: 1   MIIVLTASEEERKAREALDAGSNGYVLKNGSKSTLLAAIKSVTRGKSFLDP--------- 51

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A    ++     V  G    LT RE + L  I EGK + +IA  L I   TV  +  +IM
Sbjct: 52  ALDAKHIEALSGVEEGDIPVLTPREKQVLKLIFEGKRNRDIAEALLIGLKTVETHRMNIM 111

Query: 226 RKTATKTRSGAIAYAVRNNI 245
           RK      +  + +A R  I
Sbjct: 112 RKLDAHNVADLMKWAHRMGI 131


>gi|300788286|ref|YP_003768577.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
 gi|299797800|gb|ADJ48175.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei
           U32]
          Length = 195

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 10/189 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR-CMALSEKDKYYNVLQRPTELFCPVFHT 115
           G    LL           D +V+     + V   +A         V+    E   P    
Sbjct: 4   GFDA-LLGGDVEIVAVNPDVVVADSALAETVESLLAGLNSPPVDRVVLLVPEC--PSSSL 60

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           L E +         +      +      +  +              +  L    A+  + 
Sbjct: 61  LQEAVE---AGVRGFVVRDGPIDETLRAIRAVHAGLPWFDSSVAHRLLRL---IADRRQG 114

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 KD   T RE E +  ++EG ++ EIA  + +++ TV  +++ ++ K   + R+ 
Sbjct: 115 GGWSAFKDDPFTPREREVVECLAEGMSNTEIAARMSMAQRTVKYHVSHVLAKLGARDRAH 174

Query: 236 AIAYAVRNN 244
           A+A A  + 
Sbjct: 175 AVALAYGSG 183


>gi|293192365|ref|ZP_06609476.1| DNA-binding response regulator VraR [Actinomyces odontolyticus
           F0309]
 gi|292820280|gb|EFF79274.1| DNA-binding response regulator VraR [Actinomyces odontolyticus
           F0309]
          Length = 204

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 36/229 (15%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  + E     ++ +  R D L  +           R                      
Sbjct: 1   MIIDDHEIVRRGIAEIVDRDDALEVVAEAGSVADAVRR---------------ADLVRPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D++  +  S   +   V+          F                Y
Sbjct: 46  VILVDLQLPDGTGIDIMNRLRSS-HPQILPVV-------LTSFDDDEALAESLEAGARAY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T   A I   +  +     ++    L              +    H     +LT  E
Sbjct: 98  ILKTVRGAEITDVIKAVADGRVLLDERTLT-------------RRRVDHEDPTADLTPSE 144

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 145 RKVLDLIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 193


>gi|229588732|ref|YP_002870851.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229360598|emb|CAY47455.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 216

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    +        R++ +        R+   +++             
Sbjct: 6   ILIADDHPLFRSALHQAVTLGLGPDVRLVEVASIAELEARLTEKSDW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEADVVVRSKEFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +             EI        N+             LT 
Sbjct: 104 GFIPKSSAMEEIQKAVRAVLDGDVSWPPQAFEEI--------NVSDEAKAARDGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|258653176|ref|YP_003202332.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556401|gb|ACV79343.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 204

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +  R              A +I L+  ++   ++       G                LD
Sbjct: 3   EPIRVLVADDQALIRGAFASLINLEPDMTVVAQVGR-----GDEVLPAALAHRPDVALLD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +A          +     +    F                +     
Sbjct: 58  VQMPGMDGLAAAAVLAEQ--------VPACRVVILTTFGRPGYLRRAMEAHAAGFMVKDA 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +  +    R++  D   E   L                 +  LTGRE + L 
Sbjct: 110 PPETLLDAIRRVHQGLRVVDPDLAAESLALG----------------ESPLTGRERDVLL 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++G T  +IA  L +S  TV N+++S++ KT   TR+ A+  A     +
Sbjct: 154 ATADGGTVSQIAGRLFLSEGTVRNHLSSVIGKTGAATRADALRIATDRGWI 204


>gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp.
           WH 7803]
          Length = 227

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVE 192
                G+M +   G+ I  D +  +  +A       K      G +      EL+ RE+E
Sbjct: 115 DAFAEGVMFVSSLGKGIDGDFIRSLSAIAEGGNYYPKDVQTAAGYEDIEILPELSDREME 174

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  +S G T+ EIAV L +S  TV  +++SI+ K   K R+ A+  A++  I
Sbjct: 175 VLKVLSCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227


>gi|299768423|ref|YP_003730449.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp.
           DR1]
 gi|298698511|gb|ADI89076.1| Glycerol metabolism activator (Protein agmR) [Acinetobacter sp.
           DR1]
          Length = 216

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 27/230 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI++  +       +      S   A++        +  R+    E             
Sbjct: 1   MNILIVDDHPLFRHALIQAVRYSLPQAQIHETASVDEFYERLENGAE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F  +     ++      ++    E    +           A   
Sbjct: 48  -PDLVLLDLNLPGASGFSAL-VYVRAQYPAIPIIVVSAHEETSII-------QRAIAHGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +   + I   +  +      +  +    +                   +   LT
Sbjct: 99  MGYIPKSAHPSHIGEAIRQVLEGEIWLPPNLPPNLN-----LDPRAADETALAERIQSLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++   L  ++EG  + +IA  L +S  T+  ++ +I RK   + R+ A+
Sbjct: 154 PQQFRVLMMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAV 203


>gi|71734894|ref|YP_272941.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257483117|ref|ZP_05637158.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289627679|ref|ZP_06460633.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289648998|ref|ZP_06480341.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71555447|gb|AAZ34658.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326018|gb|EFW82076.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320332047|gb|EFW87983.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330868501|gb|EGH03210.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330881728|gb|EGH15877.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330891207|gb|EGH23868.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330985787|gb|EGH83890.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011651|gb|EGH91707.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 209

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLARDLQVVGEASNGEQLLETLRHVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   + +             
Sbjct: 48  -CEVVLLDISMPGVNGLEAIPRIRALASPP--------AILVLSMHNEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPDLADRMVFEVGLTDSRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKMKLNSLADLVKYAMEHKLL 209


>gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
 gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
          Length = 210

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  ++ ++  G+  +      + R  + ++    +Y      +       D ELT 
Sbjct: 98  GVFGAKDNIEKLCRGIEAIARGDNWLPRRLMMQLI---SYYEEKGGAKKEEPQLDIELTR 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE++ L ++  G ++ EIA  L IS +T+ +++ +I RK   K R+ A A+A RN
Sbjct: 155 REIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKRN 209


>gi|126440864|ref|YP_001058373.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
 gi|126220357|gb|ABN83863.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           668]
          Length = 279

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +       ++      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLIVV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
             S T     I   L ++   G  +    L      A  +    ++      +       
Sbjct: 98  VISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|94984291|ref|YP_603655.1| two component LuxR family transcriptional regulator [Deinococcus
           geothermalis DSM 11300]
 gi|94554572|gb|ABF44486.1| two component transcriptional regulator, LuxR family [Deinococcus
           geothermalis DSM 11300]
          Length = 200

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 54/194 (27%), Gaps = 20/194 (10%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +        L  E + D +V+      L               ++         
Sbjct: 27  LEVVGTATDGEAALALACELRPDVLVTDIEMPRLSGLDLAERLRTRCPEVRVVIVTT--- 83

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F                Y       + +   +  +   GR I      E           
Sbjct: 84  FARAGYLRRALEVGARGYLLKDAPASDLAGAIRQVHAGGRAIDPGLAAEA---------- 133

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                  WG+   LT RE + L     G ++  IA  L +S  TV NY++  + K   + 
Sbjct: 134 -------WGERDPLTERERQVLRAAEGGASTAVIAARLNLSEGTVRNYLSEAISKLGCEN 186

Query: 233 RSGAIAYAVRNNIV 246
           R  A   A     +
Sbjct: 187 RIEAARKAREQGWL 200


>gi|298485309|ref|ZP_07003401.1| DNA-binding response regulator, LuxR family, near polyamine
           transporter [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160159|gb|EFI01188.1| DNA-binding response regulator, LuxR family, near polyamine
           transporter [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 209

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L   +  L  +            +  +               
Sbjct: 2   IRVLVAEDHTIVREGIKQLIGLARDLQVVGEASNGEQLLETLRHVA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      + +  +                 L   + +             
Sbjct: 48  -CEVVLLDISMPGVNGLEAIPRIRALASPP--------AILVLSMHNEAQMAARALKVGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   GR I  D    +        +              L+
Sbjct: 99  AGYATKDSDPALLLTAIRRVAAGGRYIDPDLADRMVFEVGLTDSRPLHS--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE      +++G   ++IA  L +S  T++ + A +M+K    + +  + YA+ + ++
Sbjct: 151 EREFSVFERLAQGANVNDIAQQLALSSKTISTHKARLMQKMKLSSLADLVKYAMEHKLL 209


>gi|302526808|ref|ZP_07279150.1| LuxR family transcriptional regulator [Streptomyces sp. AA4]
 gi|302435703|gb|EFL07519.1| LuxR family transcriptional regulator [Streptomyces sp. AA4]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 66/236 (27%), Gaps = 29/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  + E     V+ L      +A +           R+ AL               
Sbjct: 2   LRVFLVDDHEVVRRGVADLLEEDPDIAVVGQAGDVAQALARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    +      +       
Sbjct: 47  RPDVAVLDVRLPDGNGIELARELRSLSPDLKC--------LMLTSYTDEQAMLDAVLAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     ++       +       A   +      G    L+
Sbjct: 99  AGYVIKDIKGLDLISAVRDVGAGKSLLDAHAAAALMTKLRDSAEKQR------GPLAHLS 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E   L  I EG T+ +I+  + ++  TV NY++ ++ K   + R+ A   A   
Sbjct: 153 DQERTLLALIGEGLTNRQISERMFLAEKTVKNYVSRLLTKLGLERRTQAAVLATEL 208


>gi|311741321|ref|ZP_07715145.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303491|gb|EFQ79570.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 221

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 66/243 (27%), Gaps = 26/243 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                + +VL  ++E   S +  L + +  +  +                    G     
Sbjct: 1   MMADALRVVLVDDEELVRSGLRLLLSNAPDIEVVAEASN---------------GRDAVA 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            V         +D  +        V  +           +     +    F T    +  
Sbjct: 46  TVLDAQPDVVLMDIRMPVMDGIAAVEKILS---------VHAVPIIMLTAFDTDSFILRA 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN--MFKSYDVHW 180
                  +   +     +   +        ++    + ++  +     +           
Sbjct: 97  LRAGAAGFLLKSTPPESLMAAVRAAAAGQPLLSPQVVDKLVSMQGPALDDAHSHHTRTAR 156

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L+ RE E    +++G  + EIA  L +S  TV +++  I++K    +R       
Sbjct: 157 NRLGALSSREREIAELVAQGLNNQEIADRLVVSMATVKSHMQHILKKIGGTSRVHIAIMV 216

Query: 241 VRN 243
           +  
Sbjct: 217 LEA 219


>gi|170723185|ref|YP_001750873.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169761188|gb|ACA74504.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 216

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    +        R++ +        R+    ++             
Sbjct: 6   ILIADDHPLFRSALRQAVTLGLGADVRLVEVASIAELESRLSEKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEAAVVVKSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +              +        ++             LT 
Sbjct: 104 GFIPKSSGLEVIQDAVRKVLDGDVWWPPQAFERV--------DVSAEAKAASEGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|119899039|ref|YP_934252.1| LuxR family transcriptional regulator [Azoarcus sp. BH72]
 gi|119671452|emb|CAL95365.1| probable transcriptional regulator, LuxR family [Azoarcus sp. BH72]
          Length = 209

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +S T     + E   G +   LVR        LD  +      
Sbjct: 4   VLIADDHAVVRGGLRQFLSSTEEFDIVAEAANGQTALELVRTSGCDVVLLDITLPDLNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++++ +  S+       L          F      +       + Y +     A+I   L
Sbjct: 64  EVLKRIKRSK-----PDLPVLIFSM---FSEDEFALPALNAGASGYLNKDSPPAQILAAL 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R +       +                       L+ RE+  L  +S+G    
Sbjct: 116 HTVVAGARYVSPSLAERLLAGTMSPGKRL--------PHENLSPREMAVLLLLSKGVPLT 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I     +S  T++ Y A I+ K    + +    Y +++ +
Sbjct: 168 RIGEQFHLSVKTISTYRARILEKLDLASNAEITRYVLQHKL 208


>gi|186683493|ref|YP_001866689.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465945|gb|ACC81746.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 206

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +  T            T     I   +  +     ++  D +  + +             
Sbjct: 86  DLETALRSGIRGILPSTSTELEIVAAVEAIAFGLVVLHPDAIELLSI----------REK 135

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           V       LT RE+E L  +  G  +  +A  L IS +TV  +++SI +K +  +R+ A+
Sbjct: 136 VVANPVQTLTPREIEVLGMLGSGLGNKAMAKRLQISEHTVKFHLSSIFQKLSVSSRTEAV 195

Query: 238 AYAVRNNIV 246
           A  VR  ++
Sbjct: 196 AVGVRLGLI 204


>gi|239980938|ref|ZP_04703462.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291452801|ref|ZP_06592191.1| luxR family two component system response regulator [Streptomyces
           albus J1074]
 gi|291355750|gb|EFE82652.1| luxR family two component system response regulator [Streptomyces
           albus J1074]
          Length = 221

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 61/240 (25%), Gaps = 39/240 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++      V+ L    D L  +              A               
Sbjct: 21  PVRVLLADDEHLIRGAVAALLALEDDLVVVAEAATGPEALAMARA--------------- 65

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 + D  V              +         +            L + +      
Sbjct: 66  -----HRPDVAVLDLQMPGADGVAVATSLRDELPSCRVMIVTGHGRPGNLKQALA---AG 117

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   T    R+   +  +    R I  +                   D     D  L
Sbjct: 118 VRGFVPKTVSAQRLAELVRSVHAGNRYIDPELAA----------------DAIAAGDSPL 161

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L   ++G    EIA    +S  TV NY++S + K   + R  A+  A     V
Sbjct: 162 TAREAEVLELAADGAPVAEIAERAALSPGTVRNYLSSAVTKLGAENRHSAVRLARERGWV 221


>gi|222098587|ref|YP_002532645.1| two-component response regulator [Bacillus cereus Q1]
 gi|221242646|gb|ACM15356.1| two-component response regulator [Bacillus cereus Q1]
          Length = 217

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 11/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D           +     + A                 F    LD  + +    
Sbjct: 3   HVLIVDDHQIVGEGTKNMIELEADIQATYILNEQEAISQSSKTPFDIYLLDMNMPNYSGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+ + +          ++      +   F+ L ++        +   S +     + + +
Sbjct: 63  DVAQKL--LHIQPDAKIILYTGFEYLSQFNLLIDS------GISGIVSKSASQQELLMAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +I    L ++ +      N+             +T +E+E L  I++GK++ 
Sbjct: 115 RAVLNGYTLIPISLLRQLRVEDMTVDNL---DTKRASSHVTITQKELEILESIAKGKSNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S   V   +  + +K    +RS A+A AVR  I+
Sbjct: 172 QIADELYMSSRAVEYNLTKLFKKFKVSSRSEALAEAVRKGII 213


>gi|302186676|ref|ZP_07263349.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
          Length = 220

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L         +               L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADMPGYTILGETADGTQLASLAQQL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S    D +  +   +         R   L   + +     +       +
Sbjct: 49  PDIILLDICMKSIDGLDALEHLLKMQ--------PRCKVLILSMQNDPDMIMRALDIGTH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A +   L  L    R +       +  +                + + LT 
Sbjct: 101 GYLLKDTTAAELEQALGALRNNERYLSPAIAEMV--IECALRGTPSDRAWAAKERYRLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFCVRERII 216


>gi|294632175|ref|ZP_06710735.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292835508|gb|EFF93857.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 223

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 24/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + ++L  +D    + +S +   +D +  +       +   ++  +            
Sbjct: 1   MTPIRLLLVDDDPLVRAGLSFMLGGADDIEIVGEAADGAAAEDQVERV------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +         + +    +     VL          FH   + +    
Sbjct: 49  ---RPDVVLMDVRMPGVDGLTARQRLRARPEPPQIVVL--------TTFHADEQVLRALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +       A+I   +  +     ++      ++   AA  A   +       +  
Sbjct: 98  AGASGFLLKDTPPAQIVEAVRRVAAGDPVLSPAVTRQLMRHAAGGAAGDRRTRAR-ERVA 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L  RE E    +  G  + +IA  L +S  TV  +++ I+ K +   R           
Sbjct: 157 ALAEREREVALRVGRGLANAQIAADLFMSVPTVKTHVSRILAKLSLDNRVQIALLVHDAG 216

Query: 245 IV 246
           ++
Sbjct: 217 LL 218


>gi|84687744|ref|ZP_01015616.1| two component transcriptional regulator, LuxR family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664245|gb|EAQ10737.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 215

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 66/224 (29%), Gaps = 17/224 (7%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P   D L+  +     +   +    L   +      L R        LD  +  
Sbjct: 1   MIVDDHPLFCDALSMTLRASMGIEHVVTAGTLEAALDH----LARDTAPDVILLDLNLPD 56

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +  +  S  +    V+   +    P         +        Y          
Sbjct: 57  VHGLEGLVRLVKSSAET--PVI-IVSSETEPRV-----VRSAIRVGAAGYVPKHSSRDTF 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R+ L  +           L      A   A           +   LT ++   L  I  G
Sbjct: 109 RLALTQIMRGEVYAPEVALSHQSANAPLTAREDALV-----RISHLTRQQARILQLICAG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A   N
Sbjct: 164 QMNKQIAYELSIAETTVKAHVTAIMRKLGVQSRTQAVLIAQEAN 207


>gi|305664552|ref|YP_003860839.1| two component transcriptional regulator, LuxR family protein
           [Maribacter sp. HTCC2170]
 gi|88708569|gb|EAR00805.1| two component transcriptional regulator, LuxR family protein
           [Maribacter sp. HTCC2170]
          Length = 209

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++          V  +   +  +  +  +  T     ++ A +              
Sbjct: 2   IKVLIADNHPIIRMGVKQVLNNASGIEVVEDVSTTSELFNKLEATS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      ++     L    K Y  ++                ++      
Sbjct: 48  ------PDVVMLEMDIPEINGIATLRRMKKEYPDVKVLMYSGQS---EDVYALSTIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S   D+  I   +  +      I  +    +          F        + F  L
Sbjct: 99  FGYLSKASDIDYIISAVKKVAEGNMFITNELAQRLA---------FDEGTQKPRRFFRKL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AYAVRN 243
           + REVE L  ++ GK + ++A+ L ++  TV+ Y A +M+K         +  A A+  
Sbjct: 150 STREVEVLKLLASGKRNKDVALGLNLNEKTVSTYKARLMKKLNVDNMVDLLQQAKALEL 208


>gi|239926639|ref|ZP_04683592.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291434955|ref|ZP_06574345.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291337850|gb|EFE64806.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 236

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 58/227 (25%), Gaps = 10/227 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R        T    L+ ++  D  +             G     L          L+  
Sbjct: 3   IRVVIAESRATPRAALSLLLATDPGIEVVGSA-----AGGEEAVTLAGETSPHITLLEVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    D V  +          VL        P                + + ++  + 
Sbjct: 58  LPAAASLDAVSRITSRPGPHRTRVLAY---STHPEHEDELLLP-VLTAGASGFLTMDTEP 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHWGKDFELTGREVECLTW 196
             +   +  +      +       +                       +L+ RE E    
Sbjct: 114 RAVLAAIRAVARGDSWLEPQHTRRLINEYVAGTGAAPAGVGPRVPLPPQLSIREREVTAL 173

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I  G T+ EIA  L +S  T   Y++ +M K   + R      A R+
Sbjct: 174 IGRGCTNTEIAEHLCLSPLTAKKYVSRLMAKLGARDRVQLALIAARS 220


>gi|188026508|ref|ZP_02962377.2| hypothetical protein PROSTU_04491 [Providencia stuartii ATCC 25827]
 gi|188019210|gb|EDU57250.1| hypothetical protein PROSTU_04491 [Providencia stuartii ATCC 25827]
          Length = 218

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 76/242 (31%), Gaps = 29/242 (11%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N   ++  I+L  +     + V  L +    L  +                    GA+  
Sbjct: 5   NIMSEKSTILLIDDHPMLRNGVKQLISLEPSLLVIGEAGD---------------GATGI 49

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            +          LD  +     F+ +  +   E             +   V +   + ++
Sbjct: 50  KIAEEQDPDLILLDLNMPGMNGFETLDELRKRELS--------GRIILFTVSNYGEDLVS 101

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y     +   + + L        ++         L +    ++  +      
Sbjct: 102 ALKRGADGYLLKDMEPEELIVALKEAASGKMVVSP------ALTSVLAESLRDNRPQTEN 155

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE   L  I++G ++  IA  L I+ +TV  ++  +++K   K+R  A  + +
Sbjct: 156 NLLSLTPRETNILELIAQGLSNKMIARKLDIAESTVKVHVKHLLKKLNLKSRVEAAVWVL 215

Query: 242 RN 243
           + 
Sbjct: 216 QQ 217


>gi|291453521|ref|ZP_06592911.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356470|gb|EFE83372.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 215

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 58/214 (27%), Gaps = 13/214 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D L R+  L   +     +  + E   G +              +D  +      D  R
Sbjct: 5   DDQLVRLA-LRLVIDGEPDLTVVAEATDGDTALTEAELHRPDVVLMDVRMPGRDGLDATR 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +                 L    F      +         +       ARI   +  + 
Sbjct: 64  ELLTRPSPP--------AVLMLTTFDADDLVLGALRAGALGFVLKDTPPARIAEAVRTVA 115

Query: 149 PKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               ++       +   A    +      + +    +   LT RE +    I+ G ++ E
Sbjct: 116 AGEPVLSPSVTARVIAAATGPHSSDARTAAREAARRRLATLTDRERDTAHAIAGGLSNPE 175

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L IS  TV  +  ++  K +   R      
Sbjct: 176 IAARLHISVATVKAHTTALFTKLSAANRVQLALL 209


>gi|242312015|ref|ZP_04811032.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|242135254|gb|EES21657.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
          Length = 202

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 56/223 (25%), Gaps = 24/223 (10%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V   P   D L   +     ++         E +      L          +D  +  
Sbjct: 1   MLVDDHPLVRDGLKMRLEAAPGLAVVGEAGDADEAL-----TLAEALAPDLALMDIGMQG 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                L                     L   +   +           + Y         I
Sbjct: 56  MNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPATEI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +                      A               LT RE + L  +++G
Sbjct: 108 VRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDILDALAQG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 157 LSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 199


>gi|163737546|ref|ZP_02144963.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
 gi|163740818|ref|ZP_02148211.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161385809|gb|EDQ10185.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161389072|gb|EDQ13424.1| DNA-binding response regulator, LuxR family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 238

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 22/221 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +S       L + +      +          LD  +   
Sbjct: 29  IVEDHPLFCDALAMTLRATVGISTIATAPTLEQAI----AEIADTATPDAVVLDLNLPDV 84

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D +  +                         +             +           
Sbjct: 85  HGLDGLIRLR------NATSAPILVVSSMADNRVIS---AAIHAGAAGFVPKHSQREIYI 135

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                +      +    +                     G+   LT ++   L  I  GK
Sbjct: 136 SAFDAIARGTPFVPPGYV---------LLPRDSETQDATGRLATLTNQQARILQLICAGK 186

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A  
Sbjct: 187 LNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAKE 227


>gi|71899932|ref|ZP_00682079.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
 gi|71730295|gb|EAO32379.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
          Length = 220

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 60/237 (25%), Gaps = 32/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +       +  + +    L  +   +   +   ++  L               
Sbjct: 3   IKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIREL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +          ++    +   P                
Sbjct: 48  RPNVVLRDMHLPGVSGLEITEKLVKGNYGSRVIIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L          S +        L+
Sbjct: 100 SGYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVL---------SSLEGGCSPFDVLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E    + +G +   IA  L +S  T+N +   +  K   +        A++  
Sbjct: 151 PRELEIALLLIQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALARLAIQYG 207


>gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
 gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC
           49242]
          Length = 261

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 21/243 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI---V 78
             S +    +++ R+  +         +  +T  +G    +           +D      
Sbjct: 21  LASRVDATLEIIRRLDSVATADELGDSLLEITSPLGVEAIVAGVLPSSANHHMDHGDEKT 80

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP---------------ENITPP 123
              WP  L R      K +   ++    +                         +    P
Sbjct: 81  PGHWPALLTREALAQNKLQSELLIDLEKQTTHIFTRDAATGEASHLRFVYARDNDAEAWP 140

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G           VA ++ G   L  +        +  +  +A Y        D      
Sbjct: 141 DGER--IVFPIVTVADMQCGFAFLG-ENLSRDETAMEILSFIANYAFARMVKVDRMCKSK 197

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT R+ E L W + GKT  EIA IL +S++TV+ Y+           R+ AI  A+R 
Sbjct: 198 PKLTDRQSEVLKWAALGKTDWEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAIVLAMRY 257

Query: 244 NIV 246
            ++
Sbjct: 258 GLI 260


>gi|219117733|ref|XP_002179656.1| diatom response regulator 2 [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408709|gb|EEC48642.1| diatom response regulator 2 [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 222

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 52/176 (29%), Gaps = 9/176 (5%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +       L+R +          V+               + I       +
Sbjct: 52  PDAIVSDIRMPGMSGLQLLREIREDVHIMGVPVIL------LTAKGLTQDRIVGYDAGAD 105

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y    FD   +   L  +  + R +  D   +I  +   +             D  LT 
Sbjct: 106 AYIPKPFDPEELVTILDNVIDRHRTLSED---KIKYMLLEKGGGGVGNGFVEATDVFLTP 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E E L  + +G  + EI     +S   V   ++ + RK   K R+  + +A+   
Sbjct: 163 DEREILELLCQGLINKEIGERTFLSTRRVEQLLSGMFRKANVKNRTELVRWAISTG 218


>gi|120609812|ref|YP_969490.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120588276|gb|ABM31716.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 222

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 20/218 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWP 83
            +    D       +   +  T  +    E  G    L +   +       D  +     
Sbjct: 11  RVLLVDDHPLVRDGVRMRLDATPHIRVAAEAGGVQEALALAEAVAPDIVLTDIRMPDGSG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L                     +   +                 Y        ++   
Sbjct: 71  IQLAALFRER--------FPLVRVMVLSMHQDAEYVRRAVGLGVRGYVLKDAPAGQLVQA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G          +                   +   LT RE   L  ++EG+++
Sbjct: 123 IETVRAGGSHFSEAVRALVD-----------GGQPAPPQGRSLTPREAVVLRLLAEGRSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +IA  +G S  TV  +   + RK     ++  + YAV
Sbjct: 172 KDIAERMGTSVRTVETHRLHLRRKLRIDGQAALVKYAV 209


>gi|188993492|ref|YP_001905502.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735252|emb|CAP53466.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 200

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +  +       S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDITVIGSAADGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + +    +L + +                 +    F              
Sbjct: 47  QPDVLVTDIEMPALTGLELAQRIQRQALP--------VRVIIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AGYLLKDAPAEQLVSALRTVQRGGRVIDPQLAMDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 142 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|311745433|ref|ZP_07719218.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
 gi|126577983|gb|EAZ82203.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1]
          Length = 208

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 73/220 (33%), Gaps = 19/220 (8%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD-------SIVSSDWPFD 85
           + R+   D    +   + +L +       L+       ++ +D        ++ +D    
Sbjct: 1   MIRIALADDHKLFAKGIESLLD--EYDDLLITGIYPNGKELIDSLKMDLPDVILTDLNMP 58

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++    + +  K      +   +   ++              + +     D   +   + 
Sbjct: 59  VLDGFGVLKSSKKA--FPKIKVIVLSMYDDEKIYKKCMKEGADAFILKDADPDELVYTIH 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++    I    R+ +     +   + F+         F+L+ REV+ +  I +G  + E
Sbjct: 117 EVYDGRHIANFQRVIQ-QANQSSFYDAFRE-------KFKLSRREVQIIKLIKDGMQNKE 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L +S  T+  +  +I  K    +R   +      N+
Sbjct: 169 IADDLSLSVQTIETHRKNIHSKLHVSSRIELVNKVQDMNL 208


>gi|254788344|ref|YP_003075773.1| regulator in two-component regulatory system [Teredinibacter
           turnerae T7901]
 gi|237686243|gb|ACR13507.1| regulator in two-component regulatory system [Teredinibacter
           turnerae T7901]
          Length = 208

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   +    +I+  +  +      +  +    +  +A  + ++        
Sbjct: 93  RAMGHGACGYIPKSCSPQKIQSAIQSMLEGNHWVPDEFTHTLTPVANEERDLAAKI---- 148

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT ++   L  + EG  + +I   +G++  TV  +I +I RK     R+ A+  
Sbjct: 149 ---ATLTPQQYRVLCLLREGWLNKQIGFEMGVTEATVKAHITAIFRKLGISNRTQAVIM 204


>gi|218289394|ref|ZP_03493628.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240500|gb|EED07681.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 200

 Score = 96.9 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 61/229 (26%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R          SD LA ++ L+            T   G                LD  
Sbjct: 2   IRVLLAEDQGLVSDALATLLVLEGDFDVV-----ATAGDGEEAVAKAVAAQPDLALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +           +     +    F              + Y      V
Sbjct: 57  MPKMSGLDAAARILRD--------VPGVRVVLLTTFARPGYLRRALQVGVHGYLLKDGKV 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   L  +    R+   + +                       D  L+ RE++ L   
Sbjct: 109 EQLAAHLRSIMAGHRVFDPELMV-----------------AAMETDSPLSAREIDVLRLA 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G T+ ++A  L +S  TV NY++  + K    TR  AI  A     +
Sbjct: 152 KRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKADEMGWL 200


>gi|311696057|gb|ADP98930.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 218

 Score = 96.9 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +++L         +  ++                G          
Sbjct: 1   MKLMIVDDHQVVRQGIANLLRSMLPAVAITEVEN---------------GQDAVARYGEL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +            +    LF  +   LP          
Sbjct: 46  RPDVVLLDMGLPDISGLEVGRRLRQRW--------RGAAILFFTMHDELPMVRQALDVGG 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S +     +   +  +      I       + +      +          +  ++T
Sbjct: 98  LGFVSKSCAPEELAEAVKRVAAGQPYIEHPIATRLAMNQERPVDH---------RLRDMT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L   + G++   IA  L +S  TV+N++A +  K    +    I  AV   ++
Sbjct: 149 QREMEVLLMYARGESLGGIAERLCVSSKTVSNHLAGLKSKLQVSSSVELIHLAVDAGLI 207


>gi|190349640|gb|ACE75883.1| quorum sensing response regulator [Serratia plymuthica]
          Length = 248

 Score = 96.9 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 32/191 (16%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHT------------LPENITPPAGMDNRYCS 132
           +  +    +       VL   +    P                   ++     + N Y  
Sbjct: 52  EWFKFYTENNYQFIDPVLITASRRITPFSWDENLMIDPGLKLPRIFDMAKNYNIVNGYTF 111

Query: 133 LTFDVARIRIGLMLLFP--------KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           +  D     + L ++                +D   ++ +L     +             
Sbjct: 112 VPHDHNHNLVVLSIMIDKHCDDNIEGEIAANQD---KLQMLLITTHDKTTELYKEINSPN 168

Query: 185 ---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                      + RE E + W S GK+  EIA+ILGI   T+  +I + ++K        
Sbjct: 169 YFDKMNNKEIFSKRENEIIYWASMGKSYQEIALILGIKLTTIKYHIGNAVKKLGVTNAKH 228

Query: 236 AIAYAVRNNIV 246
           AI   V   ++
Sbjct: 229 AIRLGVELQLI 239


>gi|49079490|gb|AAT49898.1| PA3045 [synthetic construct]
          Length = 208

 Score = 96.9 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 27/224 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG----------ASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++R++ +D      M M  L E  G               L R        LD  +    
Sbjct: 1   MSRILIVDDHPVIRMAMKMLLEAEGHQIVGDTDNGVDAISLGRELKPDLVILDIGIPRLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  + +               L           +         +      +A +  
Sbjct: 61  GLEVISRLMVLALP--------LKILVLTGQSASLFALRSMQAGAAGFVCKQGGLAELVT 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           +  +   A         Y         L+ REV  L ++S+G +
Sbjct: 113 AVNAVASGYSYFPSSAMRPVQQGA---------YSDDVELLGRLSDREVSVLQYLSQGYS 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I+  + IS  TV+ Y A ++ K    +    I +A RN ++
Sbjct: 164 NKQISEQMFISNKTVSTYKARLLLKLNAGSLVDLIEFAKRNTLI 207


>gi|25010373|ref|NP_734768.1| hypothetical protein gbs0299 [Streptococcus agalactiae NEM316]
 gi|76788230|ref|YP_329033.1| LuxR family transcriptional regulator [Streptococcus agalactiae
           A909]
 gi|77404997|ref|ZP_00782098.1| response regulator [Streptococcus agalactiae H36B]
 gi|23094725|emb|CAD45944.1| unknown [Streptococcus agalactiae NEM316]
 gi|76563287|gb|ABA45871.1| DNA-binding response regulator, LuxR family [Streptococcus
           agalactiae A909]
 gi|77176436|gb|EAO79204.1| response regulator [Streptococcus agalactiae H36B]
          Length = 196

 Score = 96.9 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 49/242 (20%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    + ++ +                    G     ++   
Sbjct: 1   MKLLVAEDQSMLRDAMCQLLLMEESVSTIDQAGN---------------GGEAIAILSNK 45

Query: 68  LFQEQKLDSIVSSDWPFD---LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 LD  +      D    VR                   +    F           
Sbjct: 46  AIDVAILDVEMPILSGLDVLEWVRKYQN------------VKVIIVTTFKRSGYFQRAIR 93

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      VA +   +  +   G+    + +  +                      
Sbjct: 94  SNVDAYVLKDRSVADLMKTIQKVLSGGKEYSPELMENVI-------------------SN 134

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A   +
Sbjct: 135 PLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIAREKD 194

Query: 245 IV 246
            +
Sbjct: 195 WL 196


>gi|332715746|ref|YP_004443212.1| LuxR family two component transcriptional regulator [Agrobacterium
           sp. H13-3]
 gi|325062431|gb|ADY66121.1| two component transcriptional regulator, LuxR family [Agrobacterium
           sp. H13-3]
          Length = 242

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 11/221 (4%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-----HFLLVRWDLFQEQKLDS 76
            V+H       + ++  +D        +       G          L  W      +   
Sbjct: 19  VVAHSKPMETSVRKLAIIDDRALDRECLAQSLIAYGLDMEVELFSSLDDWRHAPNGQHSG 78

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           I+ +    D    ++L E  ++         +       L + +         Y S +  
Sbjct: 79  ILVNVGRSDFCDDVSLHELREFIADFPYLPVVILAENRDLRQVMRAFDAGVRGYISSSIG 138

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           +A     + L    G  +  + L ++  L     +  +       +    T REV+ +  
Sbjct: 139 LAVCVGAISLALAGGAFVSAENLSDLRQLLVVAEDKERQ------RTAMFTQREVDVINA 192

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +++GK +  IA  L +  +TV  +I +IM+K   K R+  I
Sbjct: 193 LTQGKPNKIIAYELNLRESTVKVHIRNIMKKVDAKNRTEVI 233


>gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150]
 gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150]
          Length = 200

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++ L+  V             G     L+  +      LD  +   
Sbjct: 5   VAEDQSMLRDALCQLLMLEDDVE-----EVHAASDGQEAITLLEKEEVDVAILDIEMPVK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  ++        +    +    F          A   + Y      ++ + 
Sbjct: 60  TDLDVLEWIRANQ--------RETKVVIVTTFKRKGYFKRALAAHVDAYVLKERSISDLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                    +  L+ RE E L  +++G 
Sbjct: 112 ATIHTVLAGQKEYSPELVEGVAF-----------------DNNPLSQREQEVLAMVAQGS 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA  L +S  TV NY+ +I+ K     R+ A+  A   + +
Sbjct: 155 TNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199


>gi|297572136|ref|YP_003697910.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932483|gb|ADH93291.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 201

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       ++ L    + L  +  +    +    +   +              
Sbjct: 2   IRILVADDQALVRGALTALLNLEEDLEVVAEVGRGDAIMPAIREFS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D    +  ++   +  ++          F          A   
Sbjct: 48  -PDVAVIDIEMPGCSGIDAAEAIQAADLPTHVLIV--------TTFGRPGYVNRALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +   GR++                         +     LT
Sbjct: 99  RGFVVKDTPAHELARAIRTVHNGGRVVDPALA----------------TQSLFDGVNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L    EG    +IA  + +S  TV N+++S + KT   TR+ A   A     +
Sbjct: 143 DRERDILRIAEEGIPIADIAQRVFLSEGTVRNHLSSAISKTHASTRAQAAHIARERGWL 201


>gi|218886702|ref|YP_002436023.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757656|gb|ACL08555.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 236

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 68/243 (27%), Gaps = 24/243 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +  +   D        +         +        L   Q+ D I
Sbjct: 1   MRFLIVDDHAVVRKGIIEI-VHDFVPDIAPDL-----TFDEATTAAEALRLAARQRHDLI 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D      L+   +              V       +       + Y + +   
Sbjct: 55  LLDISLPDDSGLATLARLKEEDPERPVL---ILSVHREDEYVVHAFRNGADGYITKSSAP 111

Query: 138 ARIRIGLMLLFPKGRIILRDR--------LWEIGLLAAY-------QANMFKSYDVHWGK 182
             +R  +  +      I               +   A +        +      +   G 
Sbjct: 112 EELREAVTRILEGDVYISPTVAAALANAATGRLRGSAGHGGPDGGMASYGGGLPNGLGGL 171

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +  +++G T  EIA ++ +S  TV+ Y    MRK     ++  + +A+R
Sbjct: 172 AALLSAREYEVIARLAQGATVAEIARVMNLSGKTVSTYKTRAMRKLNITNQAELLRFAMR 231

Query: 243 NNI 245
           + +
Sbjct: 232 HGL 234


>gi|298247821|ref|ZP_06971626.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297550480|gb|EFH84346.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 55/229 (24%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ L+  +       +     G                LD  
Sbjct: 2   IRVLLAEDQAMVRGALAALLTLEGDIEIVAEAGS-----GDEVLPKALESKPDVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +           L     L    F                +       
Sbjct: 57  MPGCDGLTAAASLHAQ--------LPSCRILILTTFGRPGYLRQAMQSGVVGFLLKDAPS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A++   +       R++                               LT RE   L   
Sbjct: 109 AQLATAVRRAMAGERVVDPTLA----------------LSALSEGSNPLTERERTVLAAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG +  +IA  L +S  TV NY++  ++K   + R  A   A +   +
Sbjct: 153 TEGASIAQIAAKLFLSEGTVRNYLSVAIQKLGVRNRIEAARKAEQKGWL 201


>gi|241518460|ref|YP_002979088.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862873|gb|ACS60537.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 212

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 32/219 (14%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSD 81
           +  A +I +D        + +L   VG +  LL                   LD  +   
Sbjct: 3   EAPATIIVIDDDPEIREALGSLLRSVGFAVNLLASVGDFLRSGRPSGPTCLVLDVRLPGQ 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D    ++         ++      F      +P ++    G    + +  F    + 
Sbjct: 63  SGLDFQLELSRENIQL--PIV------FITGHGDIPMSVKAMKGGAVEFLTKPFREQDLL 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + +   +                       K+      +   LT RE E +  +  G+
Sbjct: 115 DAVHVGLARD---------------RAWLENEKALATVRARFDSLTPREREVMALVVTGR 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            + +IA  LG+S  TV  + + +M+K  T++       A
Sbjct: 160 PNKQIAGDLGVSEITVKVHRSQVMQKMGTRSLPELARMA 198


>gi|119471825|ref|ZP_01614158.1| response regulator receiver domain protein (CheY-like)
           [Alteromonadales bacterium TW-7]
 gi|119445315|gb|EAW26604.1| response regulator receiver domain protein (CheY-like)
           [Alteromonadales bacterium TW-7]
          Length = 201

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  +       VS L +    +  +      +     + AL              D
Sbjct: 2   IKIFLVEDQALVRDAVSALLSLDFNIDVIGQASNGLDALNAINAL--------------D 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +      D  +      +L   +A+               +    F          +   
Sbjct: 48  MPDIILTDIEMPKMNGIELSEKIAMQ--------FPAIKMVIMTTFSRAGYIRRSLSAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   L  +    ++I  +                            LT
Sbjct: 100 KGFILKEAPSDELINALKKVMQGQKVIDPELA-----------------INALDDADPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E + L   S+G  + EIA  L IS  T  NY++  + K     R  A   A +   +
Sbjct: 143 DKERKALKLASDGLKTSEIATQLFISEGTTRNYLSDAIAKLNATNRIDAARIAKQKGWL 201


>gi|78060879|ref|YP_370787.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77968764|gb|ABB10143.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 214

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 56/226 (24%), Gaps = 25/226 (11%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +             A           L          +D  
Sbjct: 11  ARLLLVDDHPLVRDGLRMRLEAADLSVVGEAGNA------DEALALAASLEPDLALMDVG 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           ++      L                     L   +   +           + Y       
Sbjct: 65  MNGMNGITLAGVFHER--------FPGIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPA 116

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + I   +  +                      A               LT RE + L  +
Sbjct: 117 SEIVRAIGAVLAGQTFFSEG-----------LAARMIHASATASPLDRLTPRERDILDAL 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 166 AEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|54310461|ref|YP_131481.1| LuxR family transcriptional regulator [Photobacterium profundum
           SS9]
 gi|46914904|emb|CAG21679.1| putative transcriptional regulator, LuxR family [Photobacterium
           profundum SS9]
          Length = 268

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  IV+  +     + +      +   A ++  +   +    +                 
Sbjct: 61  QYTIVIADDHPLFRNALFQSVHMAISGANLLEAESLDTLLSLLEK--------------E 106

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      LD  +        +  + L  +     ++         V           +  
Sbjct: 107 NDVDLLLLDLKMPGANGMSGL--IQLRNQYPDLPIVVISASEEITVV------KQVRSHG 158

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D+  +   L  +                       +     +    K   L
Sbjct: 159 AFGFIPKSSDMRALISALHQVLEGEPFFPEG-----------LGDEDDEINDLAQKIASL 207

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K+R+ A+    + ++
Sbjct: 208 TPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKSRTQAVILLQQMDL 266


>gi|313898163|ref|ZP_07831702.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312957191|gb|EFR38820.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 225

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-GASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  +        +  + + + G +   +V          + +++D I+       +   
Sbjct: 4   IMIAEDQQLIRESLKIILDSIEGFAVTTVVGNGEEVLQHLEIKRVDMILMDIRMPVMDGV 63

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
                  + Y  ++         F      +   A   N Y      +  ++  +     
Sbjct: 64  ECTRIVKEKYPNVRVL---ILTTFVDDEYVMKALAYGANGYILKGVSLGELKYAIETTME 120

Query: 150 KGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEI 206
            G ++        I ++   +    ++ D          L+ RE + +  I++G ++ EI
Sbjct: 121 GGSVLNPYVGAKMIHMMHTEKGLKMENQDHKRVNQCVRKLSAREWDIINAIAKGMSNREI 180

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  +  +  T+ NY++ I+ K   + R+    + +++ 
Sbjct: 181 AEKMIFTEGTIRNYLSIILEKLQLRDRTQLAIWYLQSG 218


>gi|311744130|ref|ZP_07717936.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
 gi|311313260|gb|EFQ83171.1| two component system response regulator [Aeromicrobium marinum DSM
           15272]
          Length = 217

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 25/234 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + ++ +   +  L  +                    G      VR  
Sbjct: 3   VRVLVVDDDALVRAGLTLILGGAADLEVVGECPD---------------GREAVAAVRSG 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +       +         +    F      +   A   
Sbjct: 48  GVDLVLMDIRMPVLDGISATGQIRGLTDPPH--------VIVLTTFDADDLVVRALAAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A I   +  +      +      ++       A   +       +   LT
Sbjct: 100 SGFLLKDTPPAEIISAIHRVVDGEPALSPTVTAQLIRQVTDAA-PTEDSTAARARIDLLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            RE+E    I  G+++ EIA  L +S  T   +I+ I  K     R   +A A+
Sbjct: 159 EREIEVAVAIGRGRSNAEIAADLHMSLATAKAHISHIFSKLDVTNRVQ-VAIAM 211


>gi|146342304|ref|YP_001207352.1| two-component LuxR family response regulator [Bradyrhizobium sp.
           ORS278]
 gi|146195110|emb|CAL79135.1| putative two-component response regulator, with HTH luxR family
           [Bradyrhizobium sp. ORS278]
          Length = 206

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 33/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +     S    L +    L  +   D        +                  
Sbjct: 1   MRILIVDDHPIVASGCRALLSGDADLELIEAADAESGEASFIAR---------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +   F+L R +   + +           +   +               
Sbjct: 45  RPDVCVVDINLPTVSGFELARRILAHDAN--------ARLIMFSMNDDPVFAARAIDIGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S + D   +   +  +F  G  +       I    A  A              +LT
Sbjct: 97  KGYVSKSGDPNDLAEAIREVFSGGSYLPPAIARSIAFAGAAVAQ---------SPLAKLT 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE+E L  +S GK+  EIA ++  S  TV N  + I +K   +T    +  A+ N 
Sbjct: 148 SRELEILRLLSAGKSLTEIAWLIHSSYKTVANTSSIIRQKLGVRTSGELVRLAIENG 204


>gi|315644697|ref|ZP_07897828.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
 gi|315279956|gb|EFU43255.1| two component transcriptional regulator, LuxR family protein
           [Paenibacillus vortex V453]
          Length = 217

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 68/235 (28%), Gaps = 23/235 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ IV+  +       +  +    D +  +            +  L            
Sbjct: 1   MEKITIVVADDQLLTREGLRAILDLEDDMEVVGAAKNGEEACEMVETL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +        ++ +  S  D Y         L    F      +   A
Sbjct: 49  ---RPRLVLLDIQMPVMDGIQALKHIKQSHPDIY--------ILILTTFIETDYIVEGMA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y     D  ++   +        I+      ++    +           +     
Sbjct: 98  HGANGYMLKDMDADKMIASIRDTVAGQFILPAPVAAKLAARMSKMTEGHPVMRRNRLDRI 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT RE      + +G  + EIA +L I+  T  NYI+++  K     R+ AI  
Sbjct: 158 RLTEREEGLARLMVQGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 212


>gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 210

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 61/222 (27%), Gaps = 19/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +        + E   A   + +          D ++      
Sbjct: 6   RLLLADDHPVVRAGLRAVLDAEPDFEIVAEAATAERAVALAATGA----CDVVLMDLQFG 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +                 P  L    + +  + +         Y         +   +
Sbjct: 62  EGMHG--SEATAAITAAADAPRVLILTTYESDADILAAVEAGAGGYLLKDAPPEELAAAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +       +              D        LT RE+E L  + EG ++ 
Sbjct: 120 RTAAAGRSALAPAVAHRL-------------MDRMRTPAQALTRRELEVLQLVGEGLSNQ 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 167 QISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208


>gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707]
 gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus
           equi 103S]
 gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707]
          Length = 212

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 65/221 (29%), Gaps = 15/221 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     + +   +S    +  + E   A+  L V         +D  +      
Sbjct: 5   AVAVVDDHPVFRLGMVALLSTLDGIEVVAEASSAAEALDVVTADVDVVLMDLELGDGSGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +                 L   +       +         Y     D A +   +
Sbjct: 65  DATRAL--------CARYPHLRVLVVTMHEDEDSLLASLRAGARGYLVKGADPAEVERAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     I+      +     A        +        ELT RE E L  I+ G  + 
Sbjct: 117 RAVANGDMIVGAAVAAKAMTAVAAPRARSSVFR-------ELTEREHEVLDLIARGHDNA 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I+  L +S  TV N++++++ K     RS AI  A    +
Sbjct: 170 TISRRLVLSPKTVRNHVSNVLTKLGVPDRSTAIVRAREAGM 210


>gi|294140574|ref|YP_003556552.1| LuxR family DNA-binding response regulator [Shewanella violacea
           DSS12]
 gi|293327043|dbj|BAJ01774.1| DNA-binding response regulator, LuxR family [Shewanella violacea
           DSS12]
          Length = 219

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 31/237 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++++NI++  +     + +    +           D   +    +    +        
Sbjct: 1   MKLEKLNIIIADDHPLFRNALRQALSGPFPDTNWFEADSADALQSLLENKQQAY------ 54

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +           + L        V+                    
Sbjct: 55  -------DLVMLDLQMPGSHG--YSTLIHLRTHFADLPVIVISAHEDNMTI------SRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRII-LRDRLWEIGLLAAYQANMFKSYDVHWG 181
                + +   +  +  +   L  +      +     + EI   A               
Sbjct: 100 VHYGSSGFIPKSSSMETLAAALASVLYGDIWLPDHAEIQEIQEDATALVAR--------- 150

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 151 KLADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|290955461|ref|YP_003486643.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644987|emb|CBG68073.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 221

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 64/233 (27%), Gaps = 19/233 (8%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            +   R   V         L  ++  +                G     L          
Sbjct: 5   DDTPLRVLIVDDHRVVRAGLRALLTGEPGFDVVGE-----TGDGEEAVRLAARLGPDVVL 59

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  ++ D      R   L    +          +      T  + +         Y   
Sbjct: 60  MDLRLTDDT-APGHRLGGLDATRRITAEAPGSRVVVLTGAGTRNDVVRAMEAGARGYILK 118

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 +   +      G  +  +    +                       L+ RE+E 
Sbjct: 119 AGPPEELFRAVRAAAAGGMGLAPEAAGHLA-------------GHLADPGAALSEREIEV 165

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  ++ G+++  IA  L ++  T+  ++  + RK  T+ R+  ++ AVR  ++
Sbjct: 166 VRLLALGRSNRAIAAALHLTEATIKTHLVRVYRKLGTENRASTVSEAVRRGLL 218


>gi|21233332|ref|NP_639249.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770294|ref|YP_245056.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115164|gb|AAM43131.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575626|gb|AAY51036.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 200

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +  +  +    S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDITVVGSVADGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 47  QPDVLVTDIEMPVLTGLELAQRIQRQALP--------VRVIIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AGYLLKDAPAEQLVSALRTVQRGGRVIDPQLAMDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 142 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|21244711|ref|NP_644293.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21110402|gb|AAM38829.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 200

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +A +       S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 47  QPDVLVTDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AGYLLKDAPAEQLVDALRQVHRGGRVIDPQLAIDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 142 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|327403986|ref|YP_004344824.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327319494|gb|AEA43986.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 224

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 83/242 (34%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ + +  +D      +       +L   +   D  +    R+  L            
Sbjct: 1   MNKIRVAMVDDDLLLLKLMHSFFDAQELFEVLFSCDKGLEAFERLKEL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 ++  D ++      +L       +    Y  ++    +     +          
Sbjct: 49  ------DKLPDVLLVDLKMAELTGIDITEKMRSDYPSVK---VIILSSHYKSSHIGFMFK 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +        R+   +  +  +G     +   ++  +    ++       +  +  
Sbjct: 100 IGASAFFPKGVSPVRLLEIVEKVVGQGYYFDEE---QLATMRNQISSKL--VPPNLDEKE 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E +  I E KT+ EIA  L I++ TV  +  ++  KT  K  +G I YA++NN
Sbjct: 155 LLSERELEIIQLICEQKTAKEIADKLFINQRTVEGHKNNMFAKTGAKNIAGLIIYAIQNN 214

Query: 245 IV 246
           I+
Sbjct: 215 II 216


>gi|77413329|ref|ZP_00789524.1| response regulator [Streptococcus agalactiae 515]
 gi|77160643|gb|EAO71759.1| response regulator [Streptococcus agalactiae 515]
 gi|319744307|gb|EFV96671.1| LuxR family DNA-binding response regulator [Streptococcus
           agalactiae ATCC 13813]
          Length = 196

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 49/242 (20%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    + ++ +                    G     ++   
Sbjct: 1   MKLLVAEDQSMLRDAMCQLLLMEESVSTIDQAGN---------------GEEAIAILSNK 45

Query: 68  LFQEQKLDSIVSSDWPFD---LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 LD  +      D    VR                   +    F           
Sbjct: 46  AIDVAILDVEMPILSGLDVLEWVRKYQN------------VKVIIVTTFKRSGYFQRAIR 93

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      VA +   +  +   G+    + +  +                      
Sbjct: 94  SNVDAYVLKDRSVADLMKTIQKVLSGGKEYSPELMENVI-------------------SN 134

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A   +
Sbjct: 135 PLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIAREKD 194

Query: 245 IV 246
            +
Sbjct: 195 WL 196


>gi|284045835|ref|YP_003396175.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950056|gb|ADB52800.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 214

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 62/230 (26%), Gaps = 21/230 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
                     P   + + R+I  D        +       G      +R        LD 
Sbjct: 5   PALVVVAEDHPVYREGIVRLIEADPRFELVAAVG-----DGREALAEIRGRAPAVAVLDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +++  +          V     E    V           +     +      
Sbjct: 60  GLPGIGGIEIMEAITREHLPTR-AVCLSALEDSVTVHR-------AISAGARAFLPKGSS 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   + ++   G ++ R     + +                     L+ RE+E L  
Sbjct: 112 GDEIVEAVSVVADGGSLLPRAVHDTLTM--------ALRQRSEVPAGPVLSTRELEVLRL 163

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S+G T   IA  L I   TV  ++  I  K     R+ A+A+  R   +
Sbjct: 164 ASDGLTVSAIAQALIIGDATVKTHLQHIYDKFGVSDRAAAVAHGFRLGFL 213


>gi|258510658|ref|YP_003184092.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477384|gb|ACV57703.1| two component transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 200

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 61/229 (26%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R          SD LA ++ L+            T   G    +           LD  
Sbjct: 2   IRVLLAEDQGLVSDALATLLALEGDFDVV-----ATAGDGEEAVVKAVALRPDLALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +           +     +    F              + Y      V
Sbjct: 57  MPKMSGLDAAARILRD--------VPGVRVVLLTTFARPGYLRRALQAGVHGYLLKDGKV 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   L  +    R+     +                       D  L+ RE++ L   
Sbjct: 109 EQLAAHLRSIMTGQRVFDPALMM-----------------AAMETDNPLSAREIDVLRLA 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G T+ ++A  L +S  TV NY++  + K    TR  AI  A     +
Sbjct: 152 KRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKADDMGWL 200


>gi|70732177|ref|YP_261933.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346476|gb|AAY94082.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 208

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 69/225 (30%), Gaps = 18/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D     + +   +     +  + E   G     L    +     LD  +   
Sbjct: 1   MKRVLIVDDHPVVRLAVRMLME-RHGLEVVAEADNGTDALKLALEYVPDILILDIGIPQL 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +++  +          +L    ++  P        +         Y     D+  + 
Sbjct: 60  DGLEVINRLMSRGMSIK--ILVLTLQVPGPFS------MRCMQAGAAGYVCKQQDITELL 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +         + L        +     +           L+GRE+  L  ++ G 
Sbjct: 112 SAVRAVLAGYSYFPNEAL--------HTFRSSQGISSEQQMIELLSGRELIVLKQLTNGM 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  T++ Y   ++ K   ++    I +A R+ ++
Sbjct: 164 SNKEIAEGLCLSNKTISTYKRRLLAKLNARSLVDLIEFAQRHRLI 208


>gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 243

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 16/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLV 87
           D +AR+     T +    M      +G    ++          E   +         +  
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGR 69

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTF 135
                     +  V +   EL  P F +   +  P              G  N      F
Sbjct: 70  SAQERDAYLLHCPVTRHILELDEPFFWSKNPSEDPARMTYRIVRGVRDLGQVNGMQVPVF 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
               +   +     +  +    +L            + +        D + L+ RE E L
Sbjct: 130 GRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 190 QWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|332666292|ref|YP_004449080.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335106|gb|AEE52207.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 213

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +++  I +  +++     VS      +            S+   +             + 
Sbjct: 1   MKKTKISIIEDNKVVRENVSKFVGFHEEFELCQVHGSVESFLHALN------------IN 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +      +          +    +      +    
Sbjct: 49  PSIQSDILILDIGLPGLSGLEAIPLILEKLPHQD--------IIMLTTYEEEDVILKALC 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y S    +  I   L ++   G  +      E   +  +             K  
Sbjct: 101 SGACSYISKKASLDEIVEALRIVANGGSYMSPSVARE---IVNHLM------GGRVSKAS 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ E L  + +GK+   I+  L IS  TV +++  + +      ++ AI       
Sbjct: 152 ILSDRQKEILEKLVDGKSYATISTELFISVETVRSHVKKLYKVLQVNNKTEAITQ-YMKG 210

Query: 245 IV 246
            +
Sbjct: 211 YI 212


>gi|330872684|gb|EGH06833.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 215

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L       AR++  +       R+    ++             
Sbjct: 5   ILIADDHPLFRSALRQALTIGLGPEARLVEAESIAQLESRLGEKADW------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASIVVRSREFGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +                       ++             LT 
Sbjct: 103 GFIPKSSSLEVIQQAVRTVLDGDVWWPSQV--------NEFVSVSDEAKAASAGLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 155 QQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 205


>gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 256

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 19/232 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           L +             R   ++  + AS F L       +  +L     SD+P   V   
Sbjct: 26  LSSETHHAVTIPDAVRRCRWISVDINASAFGLYFVSPSPERARLVPCFDSDYPGIAVATK 85

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTL--PENITPPAG-------------MDNRYCSLTF 135
            ++  +    +++       P + T      +    G               +       
Sbjct: 86  FIAGANGEE-IVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVH 144

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-WGKDFELTGREVECL 194
                   ++ L  K   + +D L+EI                   G+   ++ RE+ECL
Sbjct: 145 ADRGQCGLVVFLGSKMA-LPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECL 203

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G TS+EIA +L +S +T N Y+    +K     R+ A+A A+R  ++
Sbjct: 204 KLTANGNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255


>gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2]
 gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
 gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192]
          Length = 243

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 16/230 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---DLFQEQKLDSIVSSDWPFDLV 87
           D +AR+     T +    M      +G    ++          E   +         +  
Sbjct: 10  DSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAEGR 69

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTF 135
                     +  V +   EL  P F +   +  P              G  N      F
Sbjct: 70  SAQERDAYLLHCPVTRHILELDEPFFWSKSPSEDPERMTYRIVRGVRDLGQVNGMQVPVF 129

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECL 194
               +   +     +  +    +L            + +        D + L+ RE E L
Sbjct: 130 GRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVL 189

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            WI+ GK   E+A IL IS  TV N++ +  R+    + + A+A A+R  
Sbjct: 190 QWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239


>gi|260461884|ref|ZP_05810129.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259032131|gb|EEW33397.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 219

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 21/216 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +    +             ++  L+V  +      LD  +     
Sbjct: 12  DHPLFRGALREALAGIGNVAAIHE-----AGDFESAKALVVANEDVDLVLLDLSMPGASG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +           +                         + + S +  +  IR  
Sbjct: 67  LSGLVSLRGVH-----PSVPLVVVS---AHDDPATIRRALDLGASGFISKSASMEEIRNA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                                  +   LT ++   L  ++EG  +
Sbjct: 119 VQSVLAGDIAAPVGI--------DLGVERDPEISDLIKRLQALTPQQTRVLGMLAEGLLN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  LG+S  T+  ++++I++K    +R+ A+  
Sbjct: 171 KQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIL 206


>gi|302525406|ref|ZP_07277748.1| predicted protein [Streptomyces sp. AA4]
 gi|302434301|gb|EFL06117.1| predicted protein [Streptomyces sp. AA4]
          Length = 237

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + +   P     + R++     V     + ++        F + R        LD  + 
Sbjct: 29  VAVIEDHPLYRRSVERVLLEAPDVELGAVVDSVAR------FHVARQPAGSVVLLDLGLP 82

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  V  +A                L           +   A     + S   DV  
Sbjct: 83  GVAGAAAVLEVAELGHH----------VLVVSAQAEPETVLAAIAAGAKGFLSKDVDVDE 132

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + I +  +   G  +       I            +       + EL+ REV+ L  ++ 
Sbjct: 133 LLIAIRAVAGGGAYVSAVVAGMII--------KDNTDRPVTRPEMELSPREVQVLRLVAA 184

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+   +IA IL I   TV  Y+  I  KT  + R G +  A+R  +V
Sbjct: 185 GERDVDIARILDIGVRTVRGYLDRIRDKTGERRRPGLVKEAIRRGLV 231


>gi|256377406|ref|YP_003101066.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921709|gb|ACU37220.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 222

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 26/232 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++V +++  +D      +  +      L  +       +    +                
Sbjct: 3   ERVRVLVVDDDRLVRMALRLVVDGEPDLVVVAEAADGDAAVEAVAR-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +      +D+ +           +                 L    F +    +     
Sbjct: 49  -ERPDVVLMDARMPGRDGVSATAEIRTRPDPP--------AVLVLTTFDSDELVLGALRA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD---VHWGK 182
               +       ARI   +        ++    +  +   A    +             +
Sbjct: 100 GALGFVLKDTPPARIAEAVRTAAAGEPVLSPQAVVRLIAAATGPGSGEARRGVREAARER 159

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              LT RE+E    I+EG  + EIA  LGI   TV  +  ++  K     R 
Sbjct: 160 LAGLTERELEVARGIAEGLGNPEIAARLGIGVATVKAHTGNLFGKLGVDNRV 211


>gi|317495606|ref|ZP_07953974.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914420|gb|EFV35898.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 199

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ L    + +  +   +                G     L+   
Sbjct: 1   MKLLIAEDQSMLRDAMAKLLLMEEKVDEVFQAEN---------------GKVAMDLILKH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +     D           +    F  +           
Sbjct: 46  NIDVAILDIEMPEATGLDTLEFIREKNID--------TKVVIVTTFKRIGYFERAIKSNV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +    +    + +  I +                     L+
Sbjct: 98  DAYVLKDRSIEELMNTIENILAGHKEYSPELMENIFM-----------------NHNPLS 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  +  G ++ EIA  L +S  T  NYI++I+ K   K R+ A+  A     +
Sbjct: 141 KQETLLLKKVKHGLSNKEIAAELFLSEGTTRNYISNILTKLDCKNRTEAVKKATEKGWI 199


>gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum magneticum
           AMB-1]
          Length = 225

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 73/242 (30%), Gaps = 26/242 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++       RT  V         + R +     +            VG +   +    
Sbjct: 6   VAVMSGDRGAVRTVLVDDHGIVRTAIRRALEGMAWIDV----------VGEADDGVAALH 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI---TPPA 124
           L  + K D I+       L         D    V +R       V     +        A
Sbjct: 56  LIDDAKPDLIILDLSMPGL------DGMDIIPLVKRRNPASRIVVLTGTQDGTTMKRAFA 109

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   T     +   +       R I                   +          
Sbjct: 110 LGVDAYTLKTGGWQDLETAIGEAMAGRRYISPSA-------GLVVDGGEEGGLAAGSAVA 162

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE + L  ++EG T+ ++A ILGIS  TV+ +  +IM K   +T     A A+R  
Sbjct: 163 PLSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNKLGVRTPVALAAIALREG 222

Query: 245 IV 246
           +V
Sbjct: 223 LV 224


>gi|295400759|ref|ZP_06810736.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977340|gb|EFG52941.1| two component transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 185

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 28/180 (15%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +D   +  + +  +              +    +             
Sbjct: 33  HNPDVIVMDIRMKNDNGIEWTKKITETYPT--------CKVVILSGYDYDEYIHAAYEAG 84

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              + +       +   +                    + ++ A+              L
Sbjct: 85  AYAFVTKENSAFELANAIRQSHLG--------------IKSFPADRLS------NYHPPL 124

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E++ L +ISE +T+ EI+ +L IS+ TV ++++SI+RK    +R GA+  A++  I+
Sbjct: 125 TNVELKILQFISEDRTNAEISELLNISKRTVEHHVSSILRKLDVDSRVGAVVKAMKLGIL 184


>gi|209883776|ref|YP_002287633.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
 gi|209871972|gb|ACI91768.1| two component transcriptional regulator, LuxR family [Oligotropha
           carboxidovorans OM5]
          Length = 210

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 62/238 (26%), Gaps = 30/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       +  +   ++    +          +R+                  
Sbjct: 2   TRIIIADDHTIFREGLRQILAEANDFTLVGEATNGDDLLVRLREA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       LVR                   +   +       +       
Sbjct: 47  PCDIVLLDLSMPGISGITLVRAAREIAGAH--------RIIVLSMHEEHQYVVEALKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +      ++   +  +      +      E  L                     LT
Sbjct: 99  DGYVTKNSASDQLIAAIRKVSQGELFVSAAASQEAIL-------REMRTSPTELPHTRLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +  G     IA  L +S  TV+ +  +++ K   +T +  + YA+R+++
Sbjct: 152 RREREVFDMLVAGHKISRIARDLDLSIKTVSTHKTNLLAKMDAETTADLVRYALRHDL 209


>gi|221195335|ref|ZP_03568391.1| transcriptional regulator, LuxR family protein [Atopobium rimae
           ATCC 49626]
 gi|221185238|gb|EEE17629.1| transcriptional regulator, LuxR family protein [Atopobium rimae
           ATCC 49626]
          Length = 240

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 163 GLLAAYQAN--MFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            LL  +  +     + +    +    +LT RE E  + +  G ++ +IA  L +S  T+ 
Sbjct: 144 HLLDIHLDSTPRLSAVEPASDQTISSQLTRRENEVASLVCCGMSNAQIASKLYVSEKTIK 203

Query: 219 NYIASIMRKTATKTRSGAI 237
            ++++I  K   + R   I
Sbjct: 204 THLSNIFSKLGVRNRVQLI 222


>gi|330502238|ref|YP_004379107.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328916524|gb|AEB57355.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 216

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L        R++           + A +++             
Sbjct: 6   ILIADDHPLFRSALQQALTLGLGPEVRLVEAASIAELEGHLAAKSDW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +    +     V+    +                    +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLL--RGQYPQIPVVMISAQE------EAAVVNRSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  ++  +  +                 LA   A +             LT 
Sbjct: 104 GFIPKSSPLETLQQAVRQVLDGDTWWPP--------LAEESAPVSDEAKAASAGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAIFRKLGVRTRTQAALL 206


>gi|134099918|ref|YP_001105579.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008689|ref|ZP_06566662.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912541|emb|CAM02654.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 222

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 57/223 (25%), Gaps = 9/223 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       +   +     +  + E  G      L R        +D  +     
Sbjct: 3   RVLVADDEPLARAGVRTALEADPGIEVVAEAAGGHEALELARTHRPDVALIDIAMPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   +  +        +     L                   + +   + +      G
Sbjct: 63  IAVADELGRT--------MAGTRVLLLTELREESHIPCSLTAGASGFLLKSAENGEPAEG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  +  +    I        +   +          LT RE E L  +  G T 
Sbjct: 115 VRSAAGGGVALTPEIARWIVEQLGAAGSPAANTTRARELIVGLTPREREILALLGRGLTD 174

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  + +   TV  ++ +I+R      R  A   A    +V
Sbjct: 175 AQIARRMHVVEGTVEVFVDTILRSVQVHNRVQAALIAHEAGLV 217


>gi|13474731|ref|NP_106300.1| two-component system, response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14025486|dbj|BAB52086.1| two-component system, response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 219

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 21/216 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +    +             ++  L+V  +      LD  +     
Sbjct: 12  DHPLFRGALREALAGIGNVAAIHE-----AGDFESAKALVVANEDVDLVLLDLSMPGASG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                    S       +      +                   + + S +  +  IR  
Sbjct: 67  L--------SGLISLRGIHPAVPLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L+                                  +   LT ++   L  ++EG  +
Sbjct: 119 VQLVLAGDIAAPVGV--------DLGVERDPEISDLIKRLQALTPQQTRVLGMLAEGLLN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  LG+S  T+  ++++I++K    +R+ A+  
Sbjct: 171 KQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIL 206


>gi|226310877|ref|YP_002770771.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093825|dbj|BAH42267.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 216

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 13/221 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D  +                      G     LV+   F     D  +      +
Sbjct: 4   LLLVDDHPSVREGTKVMFEEERDFAVSAVSSGMEALELVKIIDFDVMLFDLHMPVINGLE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L + +   + +           +    F   P          + + S T    ++   + 
Sbjct: 64  LTKRIMSIKPNP--------LIIIYTGFEIEPYFNKLVEAGVSGFVSKTATREQMIEAIR 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                  +I      ++   +          +     +  +  RE + L  I++G+++ E
Sbjct: 116 CTVRNETVIPIPLFKQLRRNSVRLCTREDQLE-----EVSINEREQQILLEIAKGRSNKE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ IL +S+  V   +  I  K   ++R+ AI+ A++  I+
Sbjct: 171 LSEILLMSQRNVEYQLTRIFGKLQVRSRAEAISEAIKRGII 211


>gi|118464868|ref|YP_880140.1| LuxR family transcriptional regulator [Mycobacterium avium 104]
 gi|118166155|gb|ABK67052.1| DNA-binding response regulator, LuxR family protein [Mycobacterium
           avium 104]
          Length = 183

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 17/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G++   L++        LD  +       +   +                 L        
Sbjct: 10  GSAALELIKSHQPDVALLDYRMPGMDGAQVAAAVRADGL--------ATRVLLISAHDES 61

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +       + I   ++       ++    +  +   AA      +  
Sbjct: 62  AIVYQALQQGAAGFVLKDSTRSEIVKAVLDCAQGRDVVAPALVGGL---AAEIRQRAEPT 118

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A
Sbjct: 119 GPV------LSAREREVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAA 172

Query: 237 IAYAVRNNIV 246
           +A A+R  ++
Sbjct: 173 VAEAMRQGLL 182


>gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM
           13941]
 gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii
           DSM 13941]
          Length = 454

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+ RE E L  ++ G T+ +IA  L IS NTV  ++ +I  K    +R+ A  YA
Sbjct: 4   DTLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYA 63

Query: 241 VRNNIV 246
           VR+ IV
Sbjct: 64  VRSGIV 69


>gi|126732485|ref|ZP_01748284.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126707124|gb|EBA06191.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 235

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 61/229 (26%), Gaps = 19/229 (8%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D ++   V   P   D L   +              L + +     ++ +        L
Sbjct: 8   RDPEKALVVDDHPLFCDALTLTLQSIADFQEIRTAGTLEQALE----VMAQDSAIGLIVL 63

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D +                                        + +    
Sbjct: 64  DLNLPDVNGLDGLVR-----LRNAAPRAAILVASSM---ADNGMISHALKAGADGFVPKH 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              +  R     +      +    +   G  ++   +              LT ++   L
Sbjct: 116 SQRSVFRRAFEAVTSGRSFVPDGFIDPTGGQSSEPDDALARLAS-------LTNQQARIL 168

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A   
Sbjct: 169 HLICEGKLNKQIAFDLSIAETTVKAHVTAIMRKLGVHSRTQAVLVAQEA 217


>gi|114571288|ref|YP_757968.1| two component LuxR family transcriptional regulator [Maricaulis
           maris MCS10]
 gi|114341750|gb|ABI67030.1| two component transcriptional regulator, LuxR family [Maricaulis
           maris MCS10]
          Length = 201

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 64/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     V  L       A +  +         +                 +
Sbjct: 1   MKILIADDHDLVLDAVRALLENDIPDAEVELVRSGNEVERSL--------------SDGN 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +        VR +     D+                 +  E         
Sbjct: 47  RYDLVLLDLRMPGIAGVQDVRDLMKRHADQ--------PVAILSGMASPMEVQMLLENGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   + L+                 LA    +          +   LT
Sbjct: 99  RGFIPKTMPADGLVAAVRLI-----------------LAGQVFSPIHHTTDPENEPASLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G+ + EIA  L I   TV  ++ S+  K   + R+  +  A++   +
Sbjct: 142 PREREVLFCLQRGEANKEIARSLEIQETTVKLHLRSLSLKLDARNRTEVVVKAIQAGFL 200


>gi|332525533|ref|ZP_08401688.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332109098|gb|EGJ10021.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 211

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 17/226 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSS 80
            +  +    D       L   +S  + +    E   GA    LVR        +D  +  
Sbjct: 1   MIIRVGIVDDHAIVRTGLRQFLSEQVDLRVTGEAANGAEALELVRRGDVDVLLMDLSMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D +  +     +           L    F       T      + Y +   D   I
Sbjct: 61  QSGVDALAAIRARAAE--------LPILILSGFPETHYATTLLRQGASGYLNKECDPDEI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +    R I       +    A   +              L+ RE++    +++G
Sbjct: 113 VKAIRTVARGRRYITSQVAELLADTMAGGLDKL--------PHEALSERELQVFLRLAKG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +T   IA  + +S  TV+ Y   ++ K    + S    YA++N ++
Sbjct: 165 ETVGHIAESMFLSVKTVSTYRTRVLEKLKLASNSDLTYYALKNGLI 210


>gi|258623282|ref|ZP_05718288.1| Glycerol metabolism activator [Vibrio mimicus VM573]
 gi|262171536|ref|ZP_06039214.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus
           MB-451]
 gi|258584414|gb|EEW09157.1| Glycerol metabolism activator [Vibrio mimicus VM573]
 gi|261892612|gb|EEY38598.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus
           MB-451]
          Length = 222

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 65/227 (28%), Gaps = 23/227 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +  +         +   D   S    +   TE                
Sbjct: 5   IVADDHPLFRDAIVSVLENQFPGCHVEQADDMPSTLALVGQTTEC--------------- 49

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               D ++       +     L E                         +   A     Y
Sbjct: 50  ----DLLLLDLNMPGMAGLSGLLELRNVAPTTPVAVISAES---DKQTVLQTLAYGAVGY 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            + +    ++      +      +  D L E    +    ++             LT ++
Sbjct: 103 VAKSCARQQMGEAFAQILRGDVYLPADILRENVKTSPN-HSLRNQAGFSAETLQTLTRKQ 161

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           ++ L ++S+G  + +IA  L IS  TV +++++I++K     R  A+
Sbjct: 162 LQVLQFMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAV 208


>gi|159900604|ref|YP_001546851.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893643|gb|ABX06723.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 191

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 147 LFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +P+        L   + +L+        S       D +L+ RE E L  ++EG T+ +
Sbjct: 89  AYPQEIWASLQALQLGLCVLSPSILAQIHSPPQPEPLDNQLSEREHEVLQLLAEGLTNRQ 148

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS +TV  ++++++ K    +R+ AI    +  ++
Sbjct: 149 IAQRLIISEHTVKFHVSALLGKLDVSSRTEAIRVGAQRGLI 189


>gi|89899374|ref|YP_521845.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89344111|gb|ABD68314.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 209

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  +       +      +  +               M   T              
Sbjct: 2   IHVILCDDHAMTRRGIRDTLAEAVDIQVTAEAGSYAEVREAMRNAT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  +        ++       P        I       
Sbjct: 48  -CDVLVLDLNLPGRGGMEVLSSLKEAHSP-----IKVLIVSMFP---EDQYAIRCLRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D A +   +  +   G+ +       +            S   +      L+
Sbjct: 99  QGYLNKAGDPADLISAVRTVAQGGKYVTPAVAHMLV--------ESLSIPENQTLHAALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ GK   +IA  L +S  TV+ Y A ++ K      +    YA+RN +V
Sbjct: 151 ERELQTLLKIASGKRLADIAEELMLSPKTVSVYRARVLEKLKLSNNAELTVYAIRNELV 209


>gi|294508820|ref|YP_003572879.1| regulatory protein, LuxR:Response regulator receiver [Salinibacter
           ruber M8]
 gi|294345149|emb|CBH25927.1| regulatory protein, LuxR:Response regulator receiver [Salinibacter
           ruber M8]
          Length = 277

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 22/227 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            RT  V   P   + +     +D T+          E  G +      +   ++ + D+ 
Sbjct: 33  IRTFLVDDHPAILEAI--RNRIDDTLDV--------EVCGMATSSDEAFRKIEDMEPDTA 82

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           V      D      +         +Q         +  +           + Y       
Sbjct: 83  VVDISLEDAHGLDLVQNLQSQCPEVQVVVYSM---YDEMVYAERAIQAGASGYLMKDQPT 139

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLT 195
             +   + ++      + R+       +A+   N     +         E T RE+    
Sbjct: 140 EDLIEAIRVVDGGEVFLSRE-------MASQILNKVARGESSEPSFPIEEFTDRELAVFQ 192

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + EG + +EI   L ++R TV  Y      K    + S  + +AV+
Sbjct: 193 MLGEGCSIEEIQDRLNLARKTVETYRRRAKEKLGFDSVSKLLQFAVQ 239


>gi|209520820|ref|ZP_03269564.1| cyclic nucleotide-binding protein [Burkholderia sp. H160]
 gi|209498735|gb|EDZ98846.1| cyclic nucleotide-binding protein [Burkholderia sp. H160]
          Length = 344

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 11/180 (6%)

Query: 69  FQEQKLDSIVSSDWPFDLV--RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             ++K D +V       L      A     +   V+   +                 A  
Sbjct: 40  PNDRKPDCVVMDGDCLRLASDELEAARRHSRTTPVIVLLSNAQ------RQHVDELIAAG 93

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKD 183
            +     +     +   L L F  G  + R  +       L AA           H    
Sbjct: 94  VSGCVEKSASSELLFSALRLAFAGGVYLPRSLVAASLHEPLAAAGAEADALRGPPHPDPH 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R++E L  ++ G+++  IA  L +S  T+  ++ +I +     +R  A   A R 
Sbjct: 154 LHLTPRQIEVLALLARGRSNKMIARQLDVSEATIKTHLTTIFKALNVSSRGEASIVAARM 213


>gi|150024808|ref|YP_001295634.1| two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771349|emb|CAL42818.1| Probable two-component system response regulatory protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 222

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 23/240 (9%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ I L  + +     +  +   +     +           ++                 
Sbjct: 4   KIKIHLADDHQVLIDGLLAVLKTNSDFEVVGFSLNGEGLVNKIAR--------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +      +D  +       ++R M                 +    +             
Sbjct: 49  NKADILIMDINMPEKDGIQVLREMNELGFT--------CKVIILSSYDDSKLIKEVIKLG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y +       I   +  +    +        +I  +     N              +
Sbjct: 101 ASGYLTKQCAGESIIDAIKTVAYGNQYFSDAIKDKIFNIYTGNNNDHNQSLNPQDLISSI 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I + ++   I+ +L IS NTV  +  ++M+K   K+  G + +AV+++++
Sbjct: 161 TARELEILNLIGQERSGKYISNLLNISVNTVETHRKNLMKKLNVKSSIGLVIFAVKHDLI 220


>gi|325927296|ref|ZP_08188550.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542297|gb|EGD13785.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 200

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +A +       S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 47  QPDVLVTDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AGYLLKDAPAEQLVDALRQVHRGGRVIDPQLALDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 142 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|224552993|gb|ACN54748.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 61/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           +     +     ++  I   +   +        +      V+ R               +
Sbjct: 11  YAYAIMNKKDPSQMRII---NNNPEWFDVYLERKYQFIDPVIIRGLRCVEDYSWEDKVIL 67

Query: 121 TPPAGMDN------------RYCSLTFDVARIRIGLMLLFPKGRIILRDR-LWEIGLLAA 167
           +    +                     D     + L ++  K   I  +    +     A
Sbjct: 68  SEGYNLTRIFNESIQYNIYQGRTFPLHDYLNNLVLLSVISHKDCDINIENYRPKFITFLA 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+S GKT  E+++IL I+  TV  ++ ++M
Sbjct: 128 NLHQKTLNLYSQHHQKKNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K        A+   V   ++
Sbjct: 188 KKLGVNNARHAVKLGVELQLL 208


>gi|91777853|ref|YP_553061.1| LuxR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91690513|gb|ABE33711.1| transcriptional regulator, LuxR family [Burkholderia xenovorans
           LB400]
          Length = 333

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 61/246 (24%), Gaps = 29/246 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
                 + +++ ++           +      +G   F           K   +++S   
Sbjct: 83  PAARRAAPVISPLVRFGSAQDRIEFVRQRIRQLGFDSFSYSATRTSAHHKTMFVLTSYES 142

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRY--- 130
              +         +    +   +    P      +                G+ +     
Sbjct: 143 RSWLTRYFRERYFELDPRVALASPTGLPFLWNTADMRADLPRAQMRSERLGGLIDMLEAT 202

Query: 131 -------CSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS------ 175
                    +      +   L         R +    + E  + A        +      
Sbjct: 203 GRKSGILTQMPLPEPELSASLCFNSETGNPRWMTESIVAETLMFAHMIHEFIWTHAKSVI 262

Query: 176 -YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  +   L+  +   L  + +G+   EIA  LG+S + V+ ++  + +    + R 
Sbjct: 263 GIAPAQQQRVTLSELQHAVLRAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRV 322

Query: 235 GAIAYA 240
             I  A
Sbjct: 323 QLINVA 328


>gi|295395189|ref|ZP_06805397.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971951|gb|EFG47818.1| two component system response regulator [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 234

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 68/238 (28%), Gaps = 17/238 (7%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     +  S +  ++  +  +            +               R  
Sbjct: 14  LKVMIVDDQRLARTGFSLMLAKTGAVNVIAEASDGQQAIQVL---------DSRYRSRDP 64

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      +  R + +               L    F          A   
Sbjct: 65  LPNVILMDVRMPVMDGIEATRRITID--------YPSVKVLVLTTFDEDDYAFGALAAGA 116

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        ++   L  +     I+      ++      +A+          +  +L+
Sbjct: 117 SGFLLKDVRATQLATALQAVAQGDAILTPRITRQVLERGIVRASSAGEKRARQAQFAQLS 176

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE +    I++G ++ EIA  L +   ++   ++ I+ K   + R        ++ +
Sbjct: 177 PREFDIARLIADGLSNAEIAQKLVLQPASIRRNVSRILAKLELRDRVQIAVEWYKSGM 234


>gi|228938954|ref|ZP_04101554.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971836|ref|ZP_04132457.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228978444|ref|ZP_04138821.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228781461|gb|EEM29662.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228787926|gb|EEM35884.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228820803|gb|EEM66828.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326939456|gb|AEA15352.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 212

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++  D        M  +               G       + +      LD  + +    
Sbjct: 5   ILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGV 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  + +             +   L    F      +         Y     D  RIR  +
Sbjct: 65  EATKFICEET---------KTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             ++    ++    L +I              D         T RE+  +  I++G ++ 
Sbjct: 116 KGVYNGQTVMQDVVLDKIKSNLMESKEEECKID-----KSLFTERELSIIALIAKGFSNK 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EI+  L IS  T+ NYI S++ KT  + R+    Y
Sbjct: 171 EISKQLFISEGTIANYITSVLGKTELEHRTQIAIY 205


>gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 211

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 17/210 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  L       +   A T   G     L+         +D  ++     D +  +     
Sbjct: 18  LAQLLTGTPLEVVAEAATIDQG---LRLLDNPGIALALVDVRLAG--GEDGLAGLG--RL 70

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                 L          F          A     +         +   L     K  +  
Sbjct: 71  KHAKPSLPVVMFS---AFENPTYIARAFALGAAGFIPKGMPREDLIAALETAGNKQTLWK 127

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           RD+L          ++   +  +    +  LT RE E L  +  G+T+ +IA +LGIS  
Sbjct: 128 RDQLRR-------VSSALAAARIDQQIEAPLTQREGEVLKHVCSGRTNQQIAELLGISYE 180

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           TV  ++  ++ K     R+ A  +AVR  +
Sbjct: 181 TVKEHVQHLLEKIGVADRTQAAIWAVRAGL 210


>gi|46201160|ref|ZP_00055614.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 190

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 17/182 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L   +      LD  +     F  +  +           L     +              
Sbjct: 24  LDADEPLDLILLDLNMPGMDGFTGLLRLRED--------LPDTPIIVVSASEEEDVIEQA 75

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A     +   +    R+   + L+         +             +          K
Sbjct: 76  LACGAAGFIPKSSSKERMCEAVGLVMSGEIFRPEEIFGTKA----KVIDPLLE-----EK 126

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT R+   L+ ++ GK++ +IA  L ++  TV  ++ +I+RK    +R+ A+  A +
Sbjct: 127 LGSLTHRQRMVLSLLARGKSNKQIAYELDVTNTTVKAHMTAILRKLKVTSRTQAVIVARQ 186

Query: 243 NN 244
             
Sbjct: 187 IG 188


>gi|262165666|ref|ZP_06033403.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223]
 gi|262025382|gb|EEY44050.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223]
          Length = 222

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 4/163 (2%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++       +     L E                         +   A     Y + +
Sbjct: 50  DLLLLDLNMPGMTGLSGLLELRNVAPTTPVAVISAES---DKQTVLQTLAYGAVGYVAKS 106

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++      +      +  D L E    +                   LT ++++ L
Sbjct: 107 CARQQMGEAFAQILRGDVYLPADILRENVKTSPNHFLR-NQTGFSAETLQTLTRKQLQVL 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++S+G  + +IA  L IS  TV +++++I++K     R  A+
Sbjct: 166 QFMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAV 208


>gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 201

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +     +  L    + +  +  +                 G   + ++   
Sbjct: 2   IRIVIAEDQKMLRGALVSLLKLEEDIEVVAEVSN---------------GLDAWNIITKQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++   +                 +    F              
Sbjct: 47  QPDVCLLDIEIPDITGLEIAEKLRTMGHP--------CKIMIVTTFARPGYLQKAMDAKV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +    R++  D    + L                 +D  LT
Sbjct: 99  EAYLLKDEPIEFLIDAIHKVMNGERVVSTDLAATLFL----------------KEDNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L     G T+ EI   L ++  TV NY++S ++K   ++R  AI  A     +
Sbjct: 143 AREMEILRMAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGWI 201


>gi|15598241|ref|NP_251735.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102595|ref|ZP_01366513.1| hypothetical protein PaerPA_01003659 [Pseudomonas aeruginosa PACS2]
 gi|116051046|ref|YP_790127.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890755|ref|YP_002439619.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236018|ref|ZP_04929341.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719]
 gi|254241748|ref|ZP_04935070.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192]
 gi|296388460|ref|ZP_06877935.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313108339|ref|ZP_07794371.1| LOW QUALITY PROTEIN: putative two-component response regulator
           [Pseudomonas aeruginosa 39016]
 gi|9949150|gb|AAG06433.1|AE004729_7 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115586267|gb|ABJ12282.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167949|gb|EAZ53460.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719]
 gi|126195126|gb|EAZ59189.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192]
 gi|218770978|emb|CAW26743.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310880873|gb|EFQ39467.1| LOW QUALITY PROTEIN: putative two-component response regulator
           [Pseudomonas aeruginosa 39016]
          Length = 207

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 27/224 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVG----------ASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++R++ +D      M M  L E  G               L R        LD  +    
Sbjct: 1   MSRILIVDDHPVIRMAMKMLLEAEGHQIVGDTDNGVDAISLGRELKPDLVILDIGIPRLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  + +               L           +         +      +A +  
Sbjct: 61  GLEVISRLMVLALP--------LKILVLTGQSASLFALRSMQAGAAGFVCKQGGLAELVT 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           +  +   A         Y         L+ REV  L ++S+G +
Sbjct: 113 AVNAVASGYSYFPSSAMRPVQQGA---------YSDDVELLGRLSDREVSVLQYLSQGYS 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I+  + IS  TV+ Y A ++ K    +    I +A RN ++
Sbjct: 164 NKQISEQMFISNKTVSTYKARLLLKLNAGSLVDLIEFAKRNTLI 207


>gi|37223245|gb|AAQ90224.1| LuxR [Photobacterium leiognathi]
          Length = 197

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 17/191 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   D        +  + + +   ++L          + D  +  ++P    +    +  
Sbjct: 7   IKTCDNNKDINQCLSEMAKIIHCDYYLFAIIYPHSIIRPDISIIDNYPEKWRKYYDEAGL 66

Query: 96  DKYYNVLQRPTELFCPVFHTLPE------------NITPPAGMDNRYCSLTFDVARIRIG 143
            +Y  V+        P+   + E                 +G+   +             
Sbjct: 67  LEYDPVVNYSKSHHSPINWNVFEKKSIKKESPNVIKEAQASGLITGFSFPIHTANNGFGM 126

Query: 144 LMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           L             + L        +L +   +  K    H   D  LT RE ECL W S
Sbjct: 127 LSFAHSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTAHKKSDSILTKRETECLAWAS 186

Query: 199 EGKTSDEIAVI 209
           EGK++ +I+ I
Sbjct: 187 EGKSTWDISKI 197


>gi|326388178|ref|ZP_08209781.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207344|gb|EGD58158.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 208

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 59/219 (26%), Gaps = 16/219 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ L    D       ++  +  +          G      ++    +   LD  +    
Sbjct: 1   MTTLLVADDHCFIRSGIEAILRGSRFRIVANTASGEETLSAIKTHDPEIVLLDVNMPGMN 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D++  +      +   ++    EL         + +                   +  
Sbjct: 61  GIDVLDAVRKRGDHR--PIILLTAELT------DRQLMAAMRAGIEGIVLKDGSEDELLD 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +    + I    L     L+ +            G    L+ RE      ++ G  
Sbjct: 113 ALAQVSRGKKAIAPALLQRALDLSLH--------PETEGPLDRLSTRERRIARLVARGMR 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + +I   + I   TV  Y+  I +K     R+     A+
Sbjct: 165 NRDIGAEMNIGEGTVKVYLHGIYQKLNIDNRTELALLAI 203


>gi|118471080|ref|YP_885478.1| response regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118172367|gb|ABK73263.1| putative response regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 243

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 13/224 (5%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           + A M   D +V     +  L        FLL       +    ++++S    + V    
Sbjct: 13  IAADMASTDTSVRVRGAIDFLRLEARCDTFLLAYKTPGAKGF--NLITSVGYSEPVARYL 70

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLP---------ENITPPAGMDNRYCSLTFDVARIRI 142
            S+        ++  +                     +  P G  N +  +  D A   +
Sbjct: 71  TSDIQAKPEFTKQFADQTRVWDWDDVPEFYDSYSGAEVLRPEGFTNGFLMVLHDGAGDMV 130

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G+     +           +  +                    LT RE E L  +  G +
Sbjct: 131 GMCQGNMERPDFTPRNRSTVEAVRPLFTKYVTKLRTRAR--ARLTPREQEILALLRSGLS 188

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EI+  L +S  TV+ ++  ++RK     R  A   A    ++
Sbjct: 189 NAEISDRLYLSPRTVSTHVERVLRKLGVANRVAAAVQATELELL 232


>gi|134299717|ref|YP_001113213.1| two component LuxR family transcriptional regulator
           [Desulfotomaculum reducens MI-1]
 gi|134052417|gb|ABO50388.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum reducens MI-1]
          Length = 205

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 68/242 (28%), Gaps = 39/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ I+L  +       +  L                      M  + E       +  
Sbjct: 2   MEKIKIMLIEDHNVFREGLKKLL----------------ELEENMKVVAEAGSCQEAMTK 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      +D  +      DLV  +        Y  ++         +           
Sbjct: 46  ISNQVDVILMDIGLPDGDGLDLVTVIKKQ-----YPHIRHV---ALTTYDDPIFIKKAME 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         I+  +++ F  G  +      +  L  +               D 
Sbjct: 98  CGVRGFVPKYAFFDEIKSAVLMTFRGGSYLYPGLNADTLLNLS---------------DS 142

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E++ L  ++ GK   EIA  L IS +T    +  I  K    +   A+  A +  
Sbjct: 143 GLSEKEIQLLQLLTSGKNQKEIASDLFISLSTFRRRLKDIFSKLNVHSVQEALTIAAKKG 202

Query: 245 IV 246
           I+
Sbjct: 203 II 204


>gi|326317523|ref|YP_004235195.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374359|gb|ADX46628.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 229

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 55/213 (25%), Gaps = 8/213 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D       +   +     +      + A++       +         +   W  + 
Sbjct: 16  LVVDDHPIVAQGMADFLGLHAAIAETRHALDATN---ALRIVAAHGPPMLALVDFWLAEG 72

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                ++         +       P        +   A   + +             +  
Sbjct: 73  ASTSFVASLLAMSPGTRVLVTSADP---HPAIALKARASGAHGFVHKRESPDTYHAAVTS 129

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +         D             +M          D  LT R+ E L  + +G  +  I
Sbjct: 130 VLSGQAWFDADATALPS--RPAAGSMAPREIRLAPADIGLTPRQGEILALVLDGMPNKPI 187

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           A  L +S +TV  ++ +I++K   + R   IA 
Sbjct: 188 ASALHLSEHTVKEHLTAILQKLEARNRVELIAK 220


>gi|91976037|ref|YP_568696.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91682493|gb|ABE38795.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 221

 Score = 96.5 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 29/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V++ L  +       V  L +R D    +                          + 
Sbjct: 1   MSRVSVALVDDHPLMIEAVFSLLSRIDSFEVVATGTSAKDV---------------VDIG 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   +D  +  D    +    + S   K                      I    
Sbjct: 46  TLLRPEIMIVDLGLPGDVYAAIASVASNSCGTKLVAFTASTGVDT---------AIRALD 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +      I R+   ++       A    +         
Sbjct: 97  SGASGYVLKGSSPDELLDAIASVRSGETYITRNFATQVI-----SALRDATIRRRAAMAV 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+ RE + +  + +GKT+ EIA  + IS  TV +Y+  +M+K   + R   +  A R 
Sbjct: 152 KLSIREEQIVRLLLKGKTNKEIAHAISISEKTVKHYMTILMQKLQVRNRLEVVIAAQRL 210


>gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 886

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 92/279 (32%), Gaps = 41/279 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
           F++ Q  ++    +E +T     +   +D    +  L  +      + ++          
Sbjct: 612 FQVTQAALLKGELEEAQT-LAEQVRDLADKTNNLNGLVWSTDILAFLLSIKNEAYTEAAD 670

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L++    + QK      SD      + +    + +Y        +L+  +F    ++  P
Sbjct: 671 LIQASQARFQKPFFGNPSDLGRRWGQAIVHCGQGQYAP----ARQLYASLFWERHDDPGP 726

Query: 123 P---AGMDNRYCSLTFDVARIRIGLMLLFP----------KGRIILRDRLWEIGLLAAYQ 169
                 ++    +   +  +    L L F           +  ++ R  +     L    
Sbjct: 727 ATICLALEAVALAYEGEPEKAVELLSLAFHQPAWVNGWLHRWPLLTRLSINLQLQLGDQA 786

Query: 170 ANMFKSYDVHWGKDFE-----------------------LTGREVECLTWISEGKTSDEI 206
                        +                         L+GRE+E L  I+EG ++ EI
Sbjct: 787 YQAAWERGALLDLETTIQSILGKEDDTPHEIANQSLLEPLSGRELEVLGLIAEGLSNSEI 846

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  L +S  TV  +  +I  K +  +R+ A+A A R N+
Sbjct: 847 ARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRLNL 885


>gi|313679321|ref|YP_004057060.1| LuxR family transcriptional regulator [Oceanithermus profundus DSM
           14977]
 gi|313152036|gb|ADR35887.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 213

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + V ++  RS  +  +           ++                  
Sbjct: 2   IRVFLVDDHPVVRAGVRYILERSGEVTVVGEAISGEEALDKLTK-------------ADS 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +          V      L   +           A   
Sbjct: 49  EADIAILDLSLPGIDGIACARRLKE--------VRPNLKLLALSMHEEAEYAERFLAAGG 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   +     +   +  L      + +D L    ++           +        LT
Sbjct: 101 SGYLGKSSIEYELMDAVKALARGEHYVPQDLL--YAMIQH-------RQEKPEPTPEVLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   +  I+ G T  +IA  L +S  TV  Y      K    +R+    +A+   ++
Sbjct: 152 ERERSVVRGIAMGMTYKQIAADLELSEKTVATYRERAASKLGLSSRAALTRWALEVGLL 210


>gi|146306323|ref|YP_001186788.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145574524|gb|ABP84056.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 215

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 71/231 (30%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L        R++                         L   + 
Sbjct: 6   ILIADDHPLFRSALQQALTLGLGPEVRLVEAASIAELEA--------------CLAAKND 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           +    LD  +   + F  +  +   +  +   V+    E    V  +            +
Sbjct: 52  WDLVLLDLNMPGAYGFSGLVLLRG-QYPQIPVVMISAQEEASVVNRSREF-------GAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I++ +  +                 +A   A + +           LT 
Sbjct: 104 GFIPKSSPLETIQLAVRQVLDGDTWWPP--------MAEESAPVSEEAKAAGAGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELSVSEATVKAHVTAIFRKLGVRTRTQAALL 206


>gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
 gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135]
          Length = 215

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + E     +  +   SD L               +            +L    
Sbjct: 2   IKIFIVDDSEIHLEGMKSILKHSDNLTVTATAQTAGEAKQLLRKEK----YDLAILDISL 57

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD        F  +  + LS     + ++Q                        
Sbjct: 58  EEETDGLDLAHFIKTTFPDMPIIILSHYKDIHYIIQSLKMQL------------------ 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y +       +   +  +         + +    ++ A+        +V   K +ELT
Sbjct: 100 NGYLAKDTQAEELICAIQTVVQGKGFYFGNTISYNDIIKAFGGEE----NVKKRKPYELT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  ++ G TS EIA  L I RNTV  Y   I  K   K+    + +A +N ++
Sbjct: 156 DRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAIEIVVFAYKNKLI 214


>gi|167918297|ref|ZP_02505388.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 279

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +        +      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLIAV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
             S T     I   L ++   G  +    L      A  +    ++      +       
Sbjct: 98  VISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|70728620|ref|YP_258369.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342919|gb|AAY90525.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 216

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    +        R++ +                       L     
Sbjct: 6   ILIADDHPLFRSALHQAVTLGLGPDVRLVEVASIAELE--------------VRLTEKSD 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           +    LD  +   + F  +  +   +  +   V+    E    +  +            +
Sbjct: 52  WDLVLLDLNMPGAYGFSGLVLLRG-QYPQIPVVMVSAQEEASVMVRSREF-------GAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +             E+        ++             LT 
Sbjct: 104 GFIPKSSSLEVIQQAVRSVLDGDVWWPPQAFEEV--------SVSAEAKAASEGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|87309030|ref|ZP_01091168.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
 gi|87288373|gb|EAQ80269.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
          Length = 221

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 28/233 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +SH  +    +      D  +                 + L+R   
Sbjct: 10  KILIVEDHPLIRVGLSHRISTQSDMLVCGEADNQIE---------------GYRLIRETN 54

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      +L++ +A            R   L    +               
Sbjct: 55  PDLVIADISLKCGNGIELIKQIAGP--------CPRVKTLVLSCYSETLYAERALRAGAM 106

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +       +   +  +   GR +       +  +  +QA +             L+ 
Sbjct: 107 GYINKQEANDLVVTAIRTILNGGRFLSP----GLTQILLHQA-VAAQTTAAVDALQRLSN 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE+E    I  G TS  IA  L +S +T+ ++   I RK   K R   +  A+
Sbjct: 162 RELEIFQLIGRGMTSGVIAKQLHLSVHTIESHREKIRRKLRVKGRVQLMQEAL 214


>gi|330943805|gb|EGH46060.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 220

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 25/238 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  +     + V  L         +               L                
Sbjct: 4   NLLLVDDHSLIRAGVRALVADMPGYTILGETADGSQLASLAQRL---------------K 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S      +  +          V      L     +     +        
Sbjct: 49  PDIILLDICMKSIDGLVALEHLLK--------VQPHCKVLILSAQNDPDMIMRTLDIGAQ 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y       A +   L  L    R +       +  +                + F LT 
Sbjct: 101 GYLLKDTTAAELEQALEALRGNERYLSPAIAQMV--IECALRGTPSDRAQAAKERFRLTA 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E L  I  GK++ EIA  LG+S  T+  + A +M++      +G + + VR  I+
Sbjct: 159 RQLEILRLIVRGKSTREIADGLGLSVKTIETHRAQVMKRLQIFDVAGLVLFFVRERII 216


>gi|271500431|ref|YP_003333456.1| LuxR family two component transcriptional regulator [Dickeya
           dadantii Ech586]
 gi|270343986|gb|ACZ76751.1| two component transcriptional regulator, LuxR family [Dickeya
           dadantii Ech586]
          Length = 213

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D +     L    +    +  + E   G+     +R        LD  +      
Sbjct: 7   LMIADDHVIMREGLKQIFALDESLEVVAEAGTGSQVLSQLRECQVDLLLLDMCMPGICGE 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L+  +             R   L   ++                Y +   D   +   +
Sbjct: 67  ELIIRIVAQ--------YPRLPILVLSMYSEPQIARRVLKSGALGYITKDKDPEALLSAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I      +I                  G+   LT RE + +  +++G   +
Sbjct: 119 RRVAQGARYIDHSIAEQIVFADCQA--------QGDGRHDLLTTREHQIMVMLAQGLGVN 170

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA +L IS  TV+ + + +M K    T +  + YA+   ++
Sbjct: 171 AIADMLAISNKTVSTHKSRLMEKMQFTTNADIVKYALSQRLI 212


>gi|15896845|ref|NP_350194.1| regulatory protein [Clostridium acetobutylicum ATCC 824]
 gi|15026710|gb|AAK81534.1|AE007857_7 Regulatory protein related to malT, positive regulator of mal
           regulon (ATPase and HTH-type DNA-binding domain)
           [Clostridium acetobutylicum ATCC 824]
 gi|325511019|gb|ADZ22655.1| Positive regulator of mal regulon (ATPase and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 862

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L  + +G ++ EI  IL IS +TV  ++ +I  K     R  A+  A 
Sbjct: 796 KECILSERELEVLEVLCDGNSNKEIGSILNISLSTVKTHMINIYSKLHVSNRLQAVEKAK 855

Query: 242 RNNIV 246
             N++
Sbjct: 856 ELNLL 860


>gi|291302519|ref|YP_003513797.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571739|gb|ADD44704.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 220

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 64/240 (26%), Gaps = 22/240 (9%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             V ++L  +D    + +  +   +  +  +  +         +  L             
Sbjct: 3   SPVKVLLVDDDALVRTGLRLMFGGASGIEIVGEIGDGRDVLDTVARL------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +         R ++  +        + P  +    F      +     
Sbjct: 50  --RPDVVLMDIRMPHVDGIAATRALSARD-------TETPRVIVLTTFDADGTVVEALRA 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +        +I   +        ++  +    +    A              +   
Sbjct: 101 GAAGFLLKHSKPEQIVAAVHAAAAGEPVLSAEVTRTLIARVAGDGADRNRRGRARERLAV 160

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ +E +    +++G ++ EI   L +S  TV  Y++S + K     R      A    +
Sbjct: 161 LSDKERDVARAVAKGLSNSEIGQSLYLSSGTVKAYVSSALSKLDLTNRIQLALLAHDAEL 220


>gi|145300854|ref|YP_001143695.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853626|gb|ABO91947.1| transcriptional regulator, LuxR family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 200

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVEC 193
           F   R+ +G+  +      I R  L ++        N ++    H  ++  L T RE E 
Sbjct: 97  FRQDRLVLGIRKVLQGEYWIPRHLLCDL-------VNYYRKGGEHHLRNQTLLTAREQEI 149

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ++  G ++ EIA  L +S +T+ +++ ++ +K   + R  A+++A  
Sbjct: 150 IRYLMTGASNTEIADSLFVSEHTIKSHLYNVFKKLNVRNRLQAVSWAKE 198


>gi|269138242|ref|YP_003294942.1| two-component response regulator EsrB, LuxR family [Edwardsiella
           tarda EIB202]
 gi|61743009|gb|AAX55229.1| EsrB [Edwardsiella tarda]
 gi|237861358|gb|ACR24241.1| EsrB [Edwardsiella tarda]
 gi|267983902|gb|ACY83731.1| two-component response regulator EsrB, LuxR family [Edwardsiella
           tarda EIB202]
 gi|304558285|gb|ADM40949.1| EsrB [Edwardsiella tarda FL6-60]
          Length = 214

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 34/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   I  +NI++  +       + +L         +  +   ++       L+       
Sbjct: 1   MTISILPLNILIVEDHALLADGIRNLLDSQPRYRVVGAVSNGLAVYEACQRLS------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      D++R +     D    V+                  
Sbjct: 54  --------PDLVLLDLGLPGMDGVDVIRQLRRRWSDMRIVVV--------TASSEARRGS 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A     Y         +   +         +      +  +                
Sbjct: 98  EALAAGALAYVLKQSPQQTLLAAMQHASLGKTFVDPALRLDSLV-----------ASSDM 146

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  LT RE + L  ++EGK + +IA +L IS  TV  +  ++MRK      +    +A
Sbjct: 147 AQEPPLTLRERQILKLVAEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWA 206

Query: 241 VRNNIV 246
            R  ++
Sbjct: 207 RRLGVL 212


>gi|332528686|ref|ZP_08404663.1| two-component response regulator [Hylemonella gracilis ATCC 19624]
 gi|332041752|gb|EGI78101.1| two-component response regulator [Hylemonella gracilis ATCC 19624]
          Length = 221

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 69/246 (28%), Gaps = 32/246 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
                +++  +       +  L       A +  +         +       GA   +LV
Sbjct: 2   QTPQRVLVIDDHPLFREGLFPLLRTLLPEANITGV---GDVESALVMAKNTDGAVRLILV 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +        +  +   + D    V+    +          +     A
Sbjct: 59  ----------DLQLPRMSGLAAIGLLRQLQPDAPIAVVSGSEQQS--------DARAALA 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                +   +     +   L  +   G                 +A              
Sbjct: 101 AGAQGFVPKSMRPPDMLHALRQVLEGGLEGGFYAPPS-------MAGAILGTAPRAGGGG 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT R+ + L  + +G ++ EIA  + ++ NTV  +I++I +     +R+ AI  A
Sbjct: 154 TDEHGLTKRQHQVLARLCQGLSNKEIARDMNLTHNTVKTHISAIFKALNVMSRTQAIVEA 213

Query: 241 VRNNIV 246
               IV
Sbjct: 214 RLRGIV 219


>gi|330466013|ref|YP_004403756.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328808984|gb|AEB43156.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 232

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 59/242 (24%), Gaps = 23/242 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V I++  +D    + +S +   +  L  +                    G+      
Sbjct: 14  LRPVRILIVDDDALVRAGLSMILGGTPDLTVVGEAAD---------------GSEVMAAT 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +    K            L    F      +    
Sbjct: 59  AACRPDVVLMDIRMPRLDGLAATELLRALPKPPE--------VLVLTTFDADEHVLRALR 110

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   +  +      +       +              D       
Sbjct: 111 AGAGGFLLKDTPPAEIVRAVRRVAAGEATLSPTVTRTLIAHVTAGTAADPRRDRAAHLLA 170

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE      +  G+T+ EIA  L +S  TV  Y++ ++ +     R           
Sbjct: 171 GLTERERAVAVALGRGRTNAEIAAELFMSVATVKAYVSRLLTRLDLNNRVQVALLVHDAG 230

Query: 245 IV 246
           +V
Sbjct: 231 LV 232


>gi|329962632|ref|ZP_08300580.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
 gi|328529663|gb|EGF56561.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
          Length = 217

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           + +  +     V       + + R++     V+    + +  E  G     L+    +  
Sbjct: 1   MEKGGKAEMLVVDDHSLILEGICRLVSKMPEVAVVDAVTSGVEAAG-----LIAKRDYDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +     FDL+  +            +    +   +   +           N   
Sbjct: 56  YILDVRMPDISGFDLIARIREVN--------EHARIIVNTMHEEVWIINRLAQSGVNAVI 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +   + +   +  +                          +            T RE 
Sbjct: 108 LKSSTASELVNAIHAVLRGEPYACPR--------FTSIYQKLRRSSSELQPRDVPTRRER 159

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + L  +++G  + EIA +L IS NTV  +   ++ K   K     +  A+    V
Sbjct: 160 DVLQAVAKGMNTHEIADLLKISENTVETFRRRLISKFGAKNAIDMVLKAISQGWV 214


>gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis]
 gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis]
          Length = 277

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 28/265 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMI-------PLDCTVSWTMRMYALTEYVGA 58
            Q  + LN E       V     R    + +                 +      E    
Sbjct: 13  DQWTLALNEEQRALFMEVIEESLRLQHRSHLFNWLQRGFQCLLAHEVVIIGVRSLERASY 72

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPF--DLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
            +  L     F + + D +++ +     +     +         V            H  
Sbjct: 73  DYEYLTSSRYFGDTQFDQVLNDEDGLVSEAFARWSKLGM----PVFYHTELTAQQYNHYA 128

Query: 117 PENITPPAGMDN---RYCSLTFDVARIRIG-LMLLFPKGRIILRDRLWEIGLLAAYQA-- 170
            E++     + +   R+    F     RI  +++       +       + LL  +    
Sbjct: 129 VEHVDAERMLASELKRFVVHGFGNEHSRIATMVMFGRLSSPVNAQTAHLLELLMPHLHCA 188

Query: 171 ---------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                        S     G+   L+ RE+E L W+  GKT+ EI  I+ +S  T+ N++
Sbjct: 189 IVKVTANKCPSVLSTTARNGRIKPLSKRELEVLEWLQAGKTNWEIGNIMQVSPLTIKNHV 248

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I+RK   + RS A + A++  ++
Sbjct: 249 QNILRKLDVENRSQAASKALKLGLI 273


>gi|209965864|ref|YP_002298779.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
 gi|209959330|gb|ACI99966.1| glycerol metabolism activator AgmR [Rhodospirillum centenum SW]
          Length = 205

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 60/222 (27%), Gaps = 26/222 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L + +                   V A+   L R    +   LD  +     
Sbjct: 8   DHDLLRDALRSHIERASPGTEVLG-----VGSVDAAVTALARHRGIELVLLDLRMPGMNG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +  S        ++           +  +     A     +   T     +   
Sbjct: 63  LEGLVRLRTSH-----PGVKVALMSGE---ASPEDVRAALAFGAVGFLPKTLPGTALVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  L      +                      D         T RE E L ++ +G ++
Sbjct: 115 ISRLVAGQTFVPEGAAA-------------PEPDSQLAGGASFTRREREVLDFLLKGCSN 161

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +   TV  ++  + RK   K R+ A   AV   +
Sbjct: 162 KEIARALSLEEVTVKLHVRGLCRKLGAKNRTQAAMRAVEMGL 203


>gi|168484073|ref|ZP_02709025.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042589|gb|EDT50635.1| DNA-binding response regulator [Streptococcus pneumoniae
           CDC1873-00]
 gi|332199429|gb|EGJ13506.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 199

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L T    +  +           ++                 +
Sbjct: 1   MKVLVAEDQSMLRDAMCQLLTLQPDIESVFQAKNGQEAIQQLEK---------------E 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +   + +    V+          F              
Sbjct: 46  SVDIAILDVEMPVKTGLEVLEWIRAEKLETKVVVV--------TTFKRPGYFERAVKAGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +A +   L  +    +    + +                 +V       LT
Sbjct: 98  DAYVLKERSIADLMQTLHTVLEGRKEYSPELM-----------------EVVMTHPNPLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E+  L  I +G ++ EI   L +S  TV NY+ +I+ K     R+ A   A  +  +
Sbjct: 141 EQEIAVLKGIVQGFSNQEIVDKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199


>gi|126453676|ref|YP_001065612.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134283901|ref|ZP_01770597.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|167718883|ref|ZP_02402119.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737890|ref|ZP_02410664.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167815073|ref|ZP_02446753.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167823489|ref|ZP_02454960.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167845041|ref|ZP_02470549.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893583|ref|ZP_02480985.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167910266|ref|ZP_02497357.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|217419942|ref|ZP_03451448.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242316523|ref|ZP_04815539.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254181152|ref|ZP_04887749.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|254190516|ref|ZP_04897023.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195131|ref|ZP_04901560.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|254257993|ref|ZP_04949047.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
 gi|126227318|gb|ABN90858.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106a]
 gi|134244690|gb|EBA44788.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           305]
 gi|157938191|gb|EDO93861.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651879|gb|EDS84572.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           S13]
 gi|184211690|gb|EDU08733.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1655]
 gi|217397246|gb|EEC37262.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           576]
 gi|242139762|gb|EES26164.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1106b]
 gi|254216682|gb|EET06066.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           1710a]
          Length = 279

 Score = 96.1 bits (238), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +       ++      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLIVV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
             S T     I   L ++   G  +    L      A  +    ++      +       
Sbjct: 98  VISRTTRPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|227494681|ref|ZP_03924997.1| response regulator DegU family protein [Actinomyces coleocanis DSM
           15436]
 gi|226831863|gb|EEH64246.1| response regulator DegU family protein [Actinomyces coleocanis DSM
           15436]
          Length = 216

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 38/241 (15%)

Query: 1   MNFE--IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA 58
           MN E   +Q  +++  + E     ++ +  R+D L  +           R   +      
Sbjct: 1   MNVETKREQTRVMIIDDHEIVRRGIAEIVDRADGLEVVAEAGSVTDAIRRAELVV----- 55

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
                          +D  +      D++R +  ++      ++          F     
Sbjct: 56  ----------PDVMLVDLQLPDGTGIDIMRRLRETK-PSIKPIV-------LTSFDDDSA 97

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                      Y   T   A I   +  +     ++    +              +    
Sbjct: 98  LAEALEAGALAYVLKTVHGAEITEVIRAIADGRVLLDERTVT-------------RRKAD 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H     +LT  E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A
Sbjct: 145 HGDPTADLTPAERKVLNLIGDGLSNREIGEKLGVAEKTVKNHITSLLAKMGLQRRTQVAA 204

Query: 239 Y 239
           +
Sbjct: 205 W 205


>gi|77165178|ref|YP_343703.1| two component LuxR family transcriptional regulator [Nitrosococcus
           oceani ATCC 19707]
 gi|254433476|ref|ZP_05046984.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|76883492|gb|ABA58173.1| two component transcriptional regulator, LuxR family [Nitrosococcus
           oceani ATCC 19707]
 gi|207089809|gb|EDZ67080.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 201

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 60/212 (28%), Gaps = 33/212 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  L +  G                   L     LD  +     F+L   
Sbjct: 10  VDDDGAMRKSLALLLQGEGFDVKTYSSAQTFIERESPPLTGCLLLDVRMPGIDGFELQNI 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           + L             + +       +P  +         +    F    +   L  +  
Sbjct: 70  LQLRGI--------HLSIIMITGHADVPMAVRAMKLGAKDFIEKPFRAQTLLDRLHKILS 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +                      F S      +   LT RE +    +++GK +  IA  
Sbjct: 122 EET----------------PKKQFHSQPEKLAQLESLTRRERQVFKLLAQGKMNKHIAAE 165

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L IS  TV  + A+IM K   ++ +  +  A+
Sbjct: 166 LCISIRTVETHRANIMEKLKVRSLADIVRLAI 197


>gi|99080669|ref|YP_612823.1| two component LuxR family transcriptional regulator [Ruegeria sp.
           TM1040]
 gi|99036949|gb|ABF63561.1| two component transcriptional regulator, LuxR family [Ruegeria sp.
           TM1040]
          Length = 204

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     ++   T    +      D   ++        + +           
Sbjct: 1   MRVLLADDHDMVREAIAAYLTADGEIDVKAVCDAHAAF--------DAMQTDV------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++   ++   K    +   +    P                
Sbjct: 46  SFDLVILDYQMPGMNSIEVLKRALVANGGK---GVAILSGSGSPGL-----AKEVLDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      I  D L E             +          L+
Sbjct: 98  VGFVPKTISGLTLLNAVKFMCAGEIFIPHDLLRE------------STVAPTHPLLDGLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            R+++ L  +   KT+ EIA  L +   T+  ++ ++ RK   + R+ A   A    +
Sbjct: 146 PRQIQVLEGVCNAKTNKEIARELELEEVTIKFHVRTLCRKLEVQNRTQAALAAKSAGL 203


>gi|239993792|ref|ZP_04714316.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii ATCC 27126]
          Length = 222

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 28/233 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  +     + + H     + +  ++           +                 D
Sbjct: 3   VKILIADDHPLFRAAMCHALASVEHI-ELVETSTFPDTLTSLEE--------------ND 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-M 126
                 LD  +  +   + +      E    Y  +              P+ +       
Sbjct: 48  DIDLLFLDLTMPGNEGLNGLA-----EVHALYPDVLVVVITAQ----EEPDVMAKSFALG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF---KSYDVHWGKD 183
            + +   +  V  I   +  +      I          +    A+        D    + 
Sbjct: 99  ASGFIPKSASVDCIIDAVNTVLDGETWIPPSVHNASATMPNATASNANGHSGQDDFTNRL 158

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +LT  +++ L  +S+G  + +IA  L IS +TV  ++++++RK     R+ A
Sbjct: 159 KQLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLRKLGVINRTKA 211


>gi|332140807|ref|YP_004426545.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550829|gb|AEA97547.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 222

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 26/232 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  +     + + H  T  + L  ++           +    +             
Sbjct: 3   VKILIADDHPLFRAAMCHALTSVEHL-ELVETSTFPDTLSYLEDFQD------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +  +   + +  +A                +               A   
Sbjct: 49  -IDLLFLDLTMPGN---EGLNGLAQVHALYPD-----VLVIVITAQEEADVMAKSFALGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW---EIGLLAAYQANMFKSYDVHWGKDF 184
           + +   +  V  I   +  +      I              AA  A+          +  
Sbjct: 100 SGFIPKSASVECIIDAVNTVLDGETWIPPTVQVPSDSQQNSAASNASSVSDQGDFTARLK 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT  +++ L  +S+G  + +IA  L IS +TV  ++++++RK     R+ A
Sbjct: 160 QLTPHQLKVLRMVSDGLLNKQIAYELAISESTVKQHVSAVLRKLGVINRTKA 211


>gi|331005230|ref|ZP_08328623.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC1989]
 gi|330420973|gb|EGG95246.1| Transcriptional regulator, LuxR family [gamma proteobacterium
           IMCC1989]
          Length = 219

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 20/215 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   RS LL  +       + +      +  +G++   L          LD  +     
Sbjct: 9   DHPLFRSALLDVIHQHFSQSTISE-----SSDLGSTLQALNNDTDIDLLLLDLQMPGSQ- 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL   +A+ EK     V+                         + Y   +     +   
Sbjct: 63  -DLYGLIAIREKYPTVPVVIVS------ASDDKETINRAMGHGASGYIPKSLSADTLHKA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    + I          +      + +       +   LT ++   L ++ EG  +
Sbjct: 116 IQAVAEGEQWIP-------AFMENQLTEINQDEKSLAARISTLTPQQYRVLCYVREGWLN 168

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +I   +GI+  TV  +I +I RK     R+ A+ 
Sbjct: 169 KQIGFEIGITEATVKAHITAIFRKLGVTNRTQAVI 203


>gi|322378102|ref|ZP_08052588.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
 gi|321280939|gb|EFX57953.1| transcriptional regulatory protein DegU [Streptococcus sp. M334]
          Length = 198

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 81/238 (34%), Gaps = 44/238 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +  +  +  +   S+++ R+  +D                  S  L   +D
Sbjct: 1   MKILLVDDHKLFSQSIKLILELSEVIERVDLMDD----------------FSSVLDFSYD 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    +D  ++S +  D +       ++     +          +              
Sbjct: 45  DYDIVLIDINLTSLYQEDGLSLAQTIIENGCSAKIVIL-----TGYSKRMYEYRAKIMGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   +     +   L+ ++  G+I   + + ++                       LT
Sbjct: 100 WGFLDKSIGPEELLQNLLRIYQGGKIFSDEVVVDV-----------------------LT 136

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +  G T D+I   + +S+ TV+N++A+I  K    +R  AI  A +   
Sbjct: 137 SREIEMLELVRNGLTIDDICEKVYVSKRTVSNHLANIFSKLGVSSRQEAIHVAEQLGY 194


>gi|237653517|ref|YP_002889831.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|237624764|gb|ACR01454.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 217

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 50/222 (22%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     +     +             G +              +D  +      
Sbjct: 11  RILLADDHAVVRMGFRLLLEGAGAEVVGEADCGEAAVQAFGQLHPDVLLMDVSMPGIGGL 70

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +                 L                     Y S       +   +
Sbjct: 71  GALERVLAHH--------PAARVLMLSAHDDAQIPARALRAGAGGYLSKRAHPDELLHAV 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R I           A   A     +         LT +E      ++ G++  
Sbjct: 123 ATVARGQRYIDP---------AIAPALALAQFAGGGDPVAALTEKEFAVFLQLARGRSVA 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA    +S +TV  ++  I +K      +     AVR  ++
Sbjct: 174 EIAETHSLSPSTVGTHLYHIKQKLEVSNAAELALVAVRCGLI 215


>gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7]
          Length = 496

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 68/226 (30%), Gaps = 15/226 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + V  L    D L  +                 E +G S      W     ++L  ++
Sbjct: 274 RMAPVPSLVLGGDDLQALDVNQAFGETFGY--PAEELLGESTIAGGLWLDGGGERLRELL 331

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   V+                       V     + +           +L     
Sbjct: 332 GHSGSVRNVQL----RLQHKDRNGLDCLVSAEAVSLNEQDCV---------LVALLDISD 378

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R R  + L+     ++     +   L+         +      +  +LT RE E    I 
Sbjct: 379 RRRTEMELVHAIETVMQDTSWFSRTLIEKLANVRRANAPGTGAELADLTAREREVFDLIC 438

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +G    EIA  LG++ NTV N++A+I  K    +R  AI +A    
Sbjct: 439 QGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484


>gi|124022269|ref|YP_001016576.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962555|gb|ABM77311.1| possible DNA-binding response regulator [Prochlorococcus marinus
           str. MIT 9303]
          Length = 241

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 14/232 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTV--SWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           Q+TS  SH   R      +   D  +  SW      L   VGA+          +    D
Sbjct: 11  QKTSQQSHPLLRRSRT-VVATADRVLITSWVGWFDCLGPLVGAATGEDETLSCLKSSNAD 69

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++ +D          + +  +    L+    +  PV  TL + I       +  C+   
Sbjct: 70  LLICTDLLESGNGPSLVRKAKQLKPDLKALMLIQRPVLRTLLDAIEAH---CDGLCAHEL 126

Query: 136 -DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   L  +   G  +         ++A    +          +   L+ RE + L
Sbjct: 127 VGSGTLLAALSAIESDGTYLDS-------VVAGVLRHGRLGNGKTSSQIDNLSLREGDVL 179

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I +G ++  IA  L +S +TV +++ ++++K   + R+ A+  A R+ +V
Sbjct: 180 RGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAVVVAFRDGLV 231


>gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 196

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 44/238 (18%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  + +     ++    +   L  + P++   +    + A               + 
Sbjct: 3   KVLLADDHDLVRETIAAYLRQ-TGLHEVHPVEGLNAAQDALRA---------------ES 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F    LD  +     FD +R +                        +            +
Sbjct: 47  FDLVLLDYRMPGMEAFDGLRLIRR--------AFPDVPVALISGAASPEVARQAMGFGAS 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T     +   +  L   G  +  + +  +                     F LT 
Sbjct: 99  GFLPKTLAPDELIRAVDRLVAGGTFLPDEAVARM--------------------SFSLTP 138

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE +  I+ G ++ EIA  LG+   TV  ++ ++ RK   + R+ A   A    +V
Sbjct: 139 REVEVVRGIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEARNRTHAAMRARDLGLV 196


>gi|312959315|ref|ZP_07773832.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311286032|gb|EFQ64596.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 216

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    +        R++ +        R+   +++             
Sbjct: 6   ILIADDHPLFRSALHQAVTLGLGSDVRLVEVASIAELEARLTEKSDW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEADVVVRSKEFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +             EI        N+             LT 
Sbjct: 104 GFIPKSSAMEDIQSAVRKVLDGDVSWPPQAFEEI--------NVSDEAKAARDGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|218886230|ref|YP_002435551.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757184|gb|ACL08083.1| two component transcriptional regulator, LuxR family [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 231

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 25/236 (10%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+ +          +  L    D +          +       L   +     +     L
Sbjct: 6   NVFIAAHQPLMREGLKVLLRGLDGVRVCGEASDGRAALEGCERLGADL---AVIECGLPL 62

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +  ++    P   V  +  ++                                 +
Sbjct: 63  LDGVCVMRLLKRRHPSRRVLAIGGNDPAMLRP---------------------ALEAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +R+ +  L   G  +      E+ L     A   +  +        LT 
Sbjct: 102 GYLLPEASADEVRMAVRALLAGGGWLSPWAAREV-LRERRSAAEAEPAERERDALALLTP 160

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L  ++EG  + EIA +L +S  TV  + A++ RK +  +++ A A+A    
Sbjct: 161 REREVLHLVAEGYRNREIAGLLVVSDRTVEKHRANLFRKLSLHSQADARAWAEERG 216


>gi|194365665|ref|YP_002028275.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348469|gb|ACF51592.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 212

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 21/227 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V         LAR++     V          + +      L          +D 
Sbjct: 2   PVRVLIVDDHTLVRAGLARLLQGFADVQLVAEASNAEQALQ-----LALQHAPDVILMDL 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      + +  + L               +   +                 +      
Sbjct: 57  SLPGRTGLEALSDIRLRA--------PGTRVVMMTMHDDAAHVRDALDRGAVGFLVKDAA 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + + L         +      +  +LA        +          L+ R+ E L  
Sbjct: 109 PQELELALRAAHAGQVFLSPQISAK--MLAPMLGREKPTGIAA------LSPRQREILRR 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I +G+++ EIA  LGIS  TV  + A +M     +  +  +  A R+
Sbjct: 161 IGKGESNKEIAADLGISVKTVETHRARMMESLGCRRANDLLLLAARH 207


>gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. SIP3-4]
 gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus
           sp. MP688]
 gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. SIP3-4]
 gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus
           sp. MP688]
          Length = 314

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 76/225 (33%), Gaps = 27/225 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T +V+     +++LAR+     T     +   + +  G +   +             +  
Sbjct: 109 TDYVTKPIRTAEVLARISAHLKTSRLVHQTRGVLDAFGQAAIAVT------PGTGKIVWQ 162

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCP---VFHTLPENITPPAGMDNRYCSLTFD 136
           +      +      E                P   V           AG++    ++   
Sbjct: 163 TPLARQWMERYFGEETMPE-------YSATMPPELVRWLKELFEGGIAGLNKPTLTIPQG 215

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   L+ +    + +          +  ++ +     D      F+LT RE E L W
Sbjct: 216 SGRLIFTLVEIDNDDQWV----------ILLHEESDAAKIDALM-TTFKLTRRESEVLYW 264

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             +GKT+ +I  ILG S  T+N ++  +  K   +TR+ A A A 
Sbjct: 265 AMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALAR 309


>gi|148548301|ref|YP_001268403.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148512359|gb|ABQ79219.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|298682199|gb|ADI95266.1| PedR2 [Pseudomonas putida]
 gi|313499249|gb|ADR60615.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 212

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIVL  +        + L      L ++           R+                  
Sbjct: 1   MNIVLVDDHAVVRQGYASLLRAVLPLVQVREAASGEEALARVQEQV-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L +   LF  +   LP          
Sbjct: 47  -PNLVIMDFGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      I +    ++                   +   +T
Sbjct: 98  SGYLTKNSAPEVLIEAVQRVLAGHAYIEQPLATQLA--------CLSQQSTSDPRLQRMT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E  T +++G  +  IA  L IS  TV+N++  +  K    + +  +   +   +V
Sbjct: 150 QRELEIFTMLAKGTPARVIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVHLGIDLGVV 208


>gi|77408114|ref|ZP_00784861.1| response regulator [Streptococcus agalactiae COH1]
 gi|77173298|gb|EAO76420.1| response regulator [Streptococcus agalactiae COH1]
          Length = 196

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 49/242 (20%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    + ++ +                    G     ++   
Sbjct: 1   MKLLVAEDQSMLRDAMCQLLLMEESVSTIDQAGN---------------GEEAIAILSNK 45

Query: 68  LFQEQKLDSIVSSDWPFD---LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 LD  +      D    VR                   +    F           
Sbjct: 46  AIDVAILDVEMPILSGLDVLEWVRKYQN------------VKVIIVTTFKRSGYFQRAIR 93

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      VA +   +  +   G+    + +  +                      
Sbjct: 94  SNVDAYVLKDRSVADLMKTIQKVLSGGKEYSPELMENVI-------------------SN 134

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A   +
Sbjct: 135 PLSKQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIAREKD 194

Query: 245 IV 246
            +
Sbjct: 195 WL 196


>gi|158318162|ref|YP_001510670.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158113567|gb|ABW15764.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 238

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 76/245 (31%), Gaps = 26/245 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+     + ++L  + +   + ++ + +    +  +            + A+        
Sbjct: 1   MSAAGPALRVLLVDDQQLVRAGIALVLSGEPGIEIVAERSDGDEVVAAVRAV-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  ++     D +R +A           + P  L    F       
Sbjct: 53  -------RPDVILLDIRMARMDGVDALRALARLG--------EHPPALVLTTFSDDDVVW 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A     +         I   + L+   G  I       +            +     
Sbjct: 98  GAMAAGAAGFILKDRPAEDIVRAIRLVAEGGSWIDPSASGRL---LGALRTGAVADLAVR 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   L+ RE++ L  ++ G ++ EIA+ L +S  TV  ++ SI  K   + R+GAI  A
Sbjct: 155 RRFERLSERELQVLRAMARGASNREIAIELRVSERTVKAHVGSIFGKLEVRDRAGAIVLA 214

Query: 241 VRNNI 245
               +
Sbjct: 215 HDVGL 219


>gi|302337733|ref|YP_003802939.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634918|gb|ADK80345.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 217

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 19/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P     L  ++  +       +   + E +      + R  L     +D  +
Sbjct: 6   RFLVVDDHPVFRQGLVVLLSSNPRYEICGQAGTIEEALD-----ICRDKLPDIALVDISL 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           S     DL+              +             L           + Y       A
Sbjct: 61  SHQNGLDLIHRFKSL-----DPDMPILIISM---HDELVYAERALKSGASGYVMKQEAAA 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      +       +       A +F   +        L+ RE E L +I 
Sbjct: 113 VMLDAVKTVLAGKIYVSPVMNERL------LATVFGQREERDDLVNLLSDREFEVLEYIG 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +G  + EI+ IL +S  TVN Y   I  K    T +    YAV+
Sbjct: 167 QGYGASEISRILNLSVKTVNTYRDHIKEKMNFDTAAAIRRYAVK 210


>gi|300773710|ref|ZP_07083579.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300759881|gb|EFK56708.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 215

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +     +   I   +  +      +  D    I    +Y +N         
Sbjct: 91  ELFRQGISGFIDKHNNCQEILHAIACIQKGEVYMGEDLRRRILERFSYSSND-AEPKDVA 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE++ +  I +G  S  I+  L IS NTV  +  +I +K   K   G +  A
Sbjct: 150 TILGRLTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKNIFQKLNIKNSLGLLRLA 209

Query: 241 VRNNIV 246
           ++ +++
Sbjct: 210 IQYDLI 215


>gi|118581123|ref|YP_902373.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118503833|gb|ABL00316.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 208

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 20/221 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +  +  + A     G                +D  +      
Sbjct: 4   RILIADDHAIVREGLTMILESSGMIVAGEARDGRDALSQTEVLRPDVVVMDIAMPELNGI 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D  R +           L     +   + +T              Y       + +   +
Sbjct: 64  DATRMIHGR--------LPEVKVIVLSMHNTREHVFRAMQAGARAYLLKESAGSGLVDAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +                       +  ++          L+ RE E +  + EG+TS 
Sbjct: 116 RAVIRGECYFGEGV------------DAPQAVAGFKSPLDSLSLREREVIQLVVEGRTSA 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA +L +S  ++  Y + +M K         + +A+++ I
Sbjct: 164 EIAELLSLSPKSIETYRSRLMVKLGVGNIPALVKFALQHGI 204


>gi|113866565|ref|YP_725054.1| response regulator [Ralstonia eutropha H16]
 gi|113525341|emb|CAJ91686.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 208

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 19/221 (8%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               +       L   +   +    + E  G    F LVR        +D     +   D
Sbjct: 5   LIVDEPSRFRTTLSAEIRAELGAGEVLEMDGMQEAFRLVREQRPGLVLVDIECFGNPGID 64

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            VRC++ ++       +                ++       + +      +A +   + 
Sbjct: 65  FVRCVSATQ-----PTVPLL---VLSDSDATLASVRALRAGAHGFVVKQRGLAEVMQAVR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     +     L  +  +   + + F            L+ RE+  L +++ G ++  
Sbjct: 117 GVLSGYLVFPMHTLETVRQIGEQRESGFAR----------LSNREITILQYLARGHSNKS 166

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV+ + A+IM K    +    + YA R+ +V
Sbjct: 167 IAAQLLISSKTVSTHKANIMAKLNVGSLVEMVDYARRHQLV 207


>gi|225021681|ref|ZP_03710873.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681258|ref|ZP_07404065.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945672|gb|EEG26881.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659463|gb|EFM48963.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 200

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +  L      +  +  L   V     +                  
Sbjct: 3   IRVLIADDQDLVRGALKVLLNLEPDIKVVAELGSGVGVADAVKKY--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  + +  ++             +    F              
Sbjct: 48  RVDVALLDIEMPDVSGIEAAKTLKGTD----------CAVIIVTTFDRPGYFQRAVDAGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +              + +   +     +        +  LT
Sbjct: 98  SGYVVKDTPPDELAAAVRRVHHG-----------LRVFDNHLVEAARRAG-----NNPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E      +  +  +IA  + +S  TV N+++++M KT  +    AI  A+    +
Sbjct: 142 PREIEICNAAKDHASVAQIANRIFLSEGTVRNHLSNVMAKTGARNYHEAIHAAITKGWL 200


>gi|331087369|gb|AEC53455.1| two-component system response regulator [Actinosynnema pretiosum
           subsp. auranticum]
          Length = 205

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 67/237 (28%), Gaps = 34/237 (14%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  + E   +    +    D +  +  +    +   R   L                 
Sbjct: 1   MLVADDHEMVRAGFRMILDAQDDITVVADVADGEAAVRRAREL---------------RP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +       +   +A            +   +    F T            + 
Sbjct: 46  DVCLVDIRMPELDGLRVTELLA-----------PQAKVVVVTTFDTDENLHRALENGASG 94

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +     A +   +        +I  D    +            +          LT R
Sbjct: 95  FLTKDAGPALLVESVRAAARGDVLISPDVTLRVL--------RSWTRPSASADVGLLTPR 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + +  ++ G  + EI   L +S +TV  ++A+   KT  + R    A+A R  +V
Sbjct: 147 ERDVVREVARGLGNREIGDALHLSLSTVKTHLAAAQGKTGARNRVELAAWAFRARLV 203


>gi|330445737|ref|ZP_08309389.1| uhpA transcriptional activator [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489928|dbj|GAA03886.1| uhpA transcriptional activator [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 202

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 61/222 (27%), Gaps = 31/222 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSI 77
            + V          A+++ L+  +    +  +  E                     LD  
Sbjct: 4   VALVDDHIIVRSGFAQLLALEPDMDVVGQFSSAAEAR-------AGLPGLDATVCILDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + ++    L+  +                 +   V  +        +     + S     
Sbjct: 57  MPNESGLSLLEDL---------PSGIAC--IMLSVHDSATVVEKALSLGAKGFLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +      G  +  D    +            S + +     +LT RE +    +
Sbjct: 106 DELVQAVRTAAQGGCYLTPDIAINLV-----------SPNQNKQALSKLTKREHQISELL 154

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + G     +AV LG+S  T++ + A+ M K   K       +
Sbjct: 155 ATGLDVKAVAVKLGLSHKTIHVHRANAMDKLGVKNNVELAKF 196


>gi|261821829|ref|YP_003259935.1| transcriptional regulator NarL [Pectobacterium wasabiae WPP163]
 gi|261605842|gb|ACX88328.1| two component transcriptional regulator, LuxR family
           [Pectobacterium wasabiae WPP163]
          Length = 216

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  ED      +   P   + + ++I +D  +             G     L        
Sbjct: 1   MINEDAATLLLIDDHPMLRNGVKQLISMDPELQVAGEA-----SHGEQGVELAEQLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +       + Y 
Sbjct: 56  ILLDLNMPGMNGLETLNRLREKSLSGRIVVF--------SVSNHEDDVVNALKNGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGRE 190
               +   +   L        ++       +           +       +D +L T RE
Sbjct: 108 LKDMEPEDLLAALHQAASGKMVLSETLTPILA-------ASLRESRHSSDRDIQLLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + L  +++G ++  IA  L I+ +TV  ++  +++K   K+R  A  + ++
Sbjct: 161 RDILKLLAQGLSNKVIARKLTITESTVKVHVKHLLKKMKLKSRVEAAVWVLQ 212


>gi|159186329|ref|NP_355860.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159141463|gb|AAK88645.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 242

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 7/201 (3%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                      + A    +    F  L  W          I+ +    D    ++L E  
Sbjct: 39  RALDRECLAQSLIAYGLDMEVELFSSLDDWRHAPNGHHSGILVNVGRSDFCDDVSLHELR 98

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
           ++         +       L + +         Y S +  +A     + L    G  +  
Sbjct: 99  EFIADYPYLPVVILAENRDLRQVMRAFDAGVRGYISSSIGLAVCVGAISLALAGGAFVSA 158

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           + L ++  L     +  +       +    T REV+ +  +++GK +  IA  L +  +T
Sbjct: 159 ENLSDLRQLLVVAEDKERQ------RTAMFTQREVDVINALTQGKPNKIIAYELNLREST 212

Query: 217 VNNYIASIMRKTATKTRSGAI 237
           V  +I +IM+K   K R+  I
Sbjct: 213 VKVHIRNIMKKVDAKNRTEVI 233


>gi|72163434|ref|YP_291091.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71917166|gb|AAZ57068.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 223

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 60/235 (25%), Gaps = 30/235 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + + L  + +     ++        +                    E VG + 
Sbjct: 1   MAETADPIRVFLVDDHDVVRRGITAFLESEGDI--------------------EVVGEAA 40

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       + D  V      D        E       L          +       
Sbjct: 41  TAADAIARIPAVRPDVAVLDVRLPDGSGVEVCREVRSRLPELACLM---LTSYSDDEALY 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y       + +   +  +   G ++       I           +  +   
Sbjct: 98  QAVMAGASGYVLKQIHGSDLVGAVRTVAGGGSLLDPQSTARI-------MERLRERERRE 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +LT +E      I EG T+ EI   + ++  TV NY++SI+ K   + R+ 
Sbjct: 151 DPLAKLTEQERRIFELIGEGLTNREIGERVFLAEKTVKNYVSSILAKLDMQRRTQ 205


>gi|167562212|ref|ZP_02355128.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167569457|ref|ZP_02362331.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 279

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +        +      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLIAV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCRACAPTPVAALTDDASPEHAQALFDAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
               +     I   L ++   G  I    L      A  +     +      +       
Sbjct: 98  VIPRSTRPHLIVRALEMVLLGGHYIPPSALNLTEPAARARDGRVDAIVSQLPRRKRSACS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|88860328|ref|ZP_01134966.1| two-component system regulatory protein [Pseudoalteromonas tunicata
           D2]
 gi|88817526|gb|EAR27343.1| two-component system regulatory protein [Pseudoalteromonas tunicata
           D2]
          Length = 204

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 21/190 (11%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      +    F    LD  + +     ++  M             +   L    F   
Sbjct: 36  GIDALQKLSEADFDIVLLDMRMPNLDGLGVLEAMQQRG--------DKTPVLIITTFEDC 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     ++      +  +     ++       +              
Sbjct: 88  DVLVKAINLGAKGYVLKNIELEEFISAINTVISGQLVLQDALTHYL-------------L 134

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +      + LT +E+  L  +S G  +  IA+ L  S  T+ N+++ I+ K A   R+ A
Sbjct: 135 NQQSPPSYHLTAKELSVLRCMSLGMANKAIALYLDNSEGTIRNHVSQIIAKLAVHDRTQA 194

Query: 237 IAYAVRNNIV 246
           +  A++N +V
Sbjct: 195 VIKAIQNQLV 204


>gi|298247238|ref|ZP_06971043.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549897|gb|EFH83763.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 939

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 85/253 (33%), Gaps = 28/253 (11%)

Query: 5   IQQVNIVLNRED-EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + Q+   L   D EQ   +   +     L + +      V++   + A ++   A + L+
Sbjct: 698 VDQMRFWLAGGDLEQARRWAREVKLGDPLDSPLARERQNVAFARLLLAESQADQALNLLI 757

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
              +     +  + V   W    ++   + ++ +                          
Sbjct: 758 PLVERATVTQRWNHVLEMWLLQ-IQAYHMLQRQRE---------------ALSLLAQAVH 801

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
            G    Y     D      GL+    +      D L  +G L         +   H   +
Sbjct: 802 LGASEGYIRHFVDGGAAIAGLLSQLREQEHQEEDHL-YLGTLVRAFNQQPAAPPAHLESE 860

Query: 184 F----------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                       L+ RE E L  ++ G ++ +IA  L ++ +TV ++I++I+ K     R
Sbjct: 861 PSSRLPQPLLDPLSAREQEVLRLLARGASNQDIAEALVVATSTVKHHISNILSKLEATNR 920

Query: 234 SGAIAYAVRNNIV 246
           + A+A A    ++
Sbjct: 921 TQAVARARALGLL 933


>gi|160900754|ref|YP_001566336.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160366338|gb|ABX37951.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 220

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 61/224 (27%), Gaps = 24/224 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D ++  +     +       ++ + +      L R         D  
Sbjct: 5   IRILLVDDHPLVRDGVSMRLQATDHIRVVGEAASVDQALP-----LARQLSPDLVVTDIR 59

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL                     L   +           A     Y       
Sbjct: 60  MPGASGIDLAALFRDQ--------FPLVRVLVLSMHEDPEYVRRAVALGARGYVLKDAPA 111

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  ++  G                      +      G    LT RE   L WI
Sbjct: 112 QQLIEAIDRVYAGGLYFSPGLQPVA-----------EEDGSASGPRRALTPREASVLQWI 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           SEG+++ EIA ++G S  TV  +   + RK      +  I YAV
Sbjct: 161 SEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIDGHAAFIKYAV 204


>gi|307135373|gb|ADN33401.1| HanR [Halomonas anticariensis]
          Length = 252

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 69/223 (30%), Gaps = 17/223 (7%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                      + E  G   F LV             +  ++  +        +      
Sbjct: 30  DYFDKQKLAMEVRENTGFEFFSLVLRPCIPFTNNYLYIIDNYGCEWEGLYQDKKFWTIDP 89

Query: 101 VLQR---------PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           VLQ            E                 G+ +    L         G+  +  K 
Sbjct: 90  VLQHKNYVNKSGILWENSLFDKSNELWRSAEDFGLCSGMSFLVSFSDMPVRGVFSISSKD 149

Query: 152 RIIL--RDRLWE---IGLLAAYQANMFK---SYDVHWGKDFELTGREVECLTWISEGKTS 203
                 +D   +   +  L+    +  K              L+ RE + L + ++G TS
Sbjct: 150 YYYANNQDVKMQRYNVCPLSIKVMDCIKGKVDVGKSVANPVFLSVREADILRYSADGLTS 209

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EI+  L ++++T++ +I + + K   K +  A++ A+  +I+
Sbjct: 210 SEISKKLYVTKSTIDFHIKNAIDKLGCKNKVQAVSKALLLDIL 252


>gi|294815845|ref|ZP_06774488.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328444|gb|EFG10087.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 66/242 (27%), Gaps = 26/242 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + ++ +   ++ L  +            +  L               
Sbjct: 3   VRLLVVDDDPLVRAGLALMLGGAEDLEIVGEGADGAEVQELVDRLA-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +         +                 +    FH   + +       
Sbjct: 49  -PDVVLMDIRMPAVDGLTATERLRARPGAPE--------VVVLTTFHADEQVLRALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDF 184
             +       A I   +  +     ++      ++    +  A  A           +  
Sbjct: 100 AGFVLKDTPPAEIVDAVRRVAAGDPVLSPAVTRQLMSHVVGTARDAAGDPRRRSALARLE 159

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L GRE E    +  G+++ EI+  L IS  TV  +++ ++ K     R           
Sbjct: 160 TLAGREREVALAVGRGQSNAEISASLYISVPTVKTHVSRVLAKLGLNNRVQIALLVHDAE 219

Query: 245 IV 246
           ++
Sbjct: 220 LL 221


>gi|110681357|ref|YP_684364.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109457473|gb|ABG33678.1| nitrate/nitrite response regulator protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 210

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 73/247 (29%), Gaps = 44/247 (17%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +  +V+I+L   +    S +S +  R    + +        +   +  +   V    
Sbjct: 1   MNDKRGKVSIMLGDGNPLVLSALSEVFERDPRFSLVATSATAEGFLGMVMRVPVDV---C 57

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            L         +KL  ++        +              + R                
Sbjct: 58  VLDWNIPALGGEKLMEVLREQENAPRIVAYGNDG----DPGVPR---------------- 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                M +   +     A     +                                ++  
Sbjct: 98  ---RAMASGAAACVARSAPTESIVQTCLDVAD-------------GKMVFPYLDIREIKT 141

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA-- 238
                L+ +E E L  ++EG T+ +++  L IS NTV  ++++I  K + + R+ AIA  
Sbjct: 142 DPIETLSRKEREILDALAEGLTNKQLSARLEISTNTVKFHLSNIFDKLSVRNRTQAIAHY 201

Query: 239 ---YAVR 242
               A R
Sbjct: 202 YASKARR 208


>gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426]
 gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 391

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 123 PAGMDNRYCSLTFDVARIR---IGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------ 173
             G+ +      +     R     ++   P     +  RL+   +     A         
Sbjct: 258 LFGLASLVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIK 317

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G+   L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R
Sbjct: 318 APKKEWEGRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNR 377

Query: 234 SGAIAYAVRNNIV 246
           + A+A A+R  ++
Sbjct: 378 TEAVAKALRLGLI 390


>gi|294147003|ref|YP_003559669.1| putative response regulator [Sphingobium japonicum UT26S]
 gi|292677420|dbj|BAI98937.1| putative response regulator [Sphingobium japonicum UT26S]
          Length = 258

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 20/234 (8%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRW 66
            +D  R   V        ++ R++ +D        + ++        E   A+       
Sbjct: 30  SDDPGR--GVGRYMGGEAIMERVLIVDDHPLVRDGLRSVIAISFDNIEIFEAATLDEAVS 87

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L ++   D I+      D+ R   L      + +L                     A  
Sbjct: 88  LLEKQDNFDLILLDLNIPDVRRLDGLKLLRDRFPILPVVMVSG---AFDRAIVQEALAAG 144

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   +   + I   L  +      +       +   A          D    +   L
Sbjct: 145 AAGFIPKSLKRSAIVDALHRVVSGEIYLPEAMGESVAPTA--------EEDEIARRIDSL 196

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T ++   L  +  G+ + +IA  LG+S  T+  ++++I++K    +R+ A+  A
Sbjct: 197 TPQQKTVLAHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQAVIKA 250


>gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli
           1180]
          Length = 123

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                              
Sbjct: 5   DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCGKIS 52

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR T+  +  +IM+K    +    I
Sbjct: 53  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKKLDVYSGIELI 112

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 113 KTALRMG 119


>gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM
           9485]
 gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM
           9485]
          Length = 508

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  ++ RE E L  ++ G T+ +IAV L IS NTV  ++ +I  K   ++R+ A  YA+R
Sbjct: 4   ESPISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYAIR 63

Query: 243 NNIV 246
             IV
Sbjct: 64  TGIV 67


>gi|111022468|ref|YP_705440.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821998|gb|ABG97282.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 211

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 66/242 (27%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V +V+  +       V      S  +  +   D   +    +  L            
Sbjct: 1   MSAVRVVVGDDHPIFRDGVVRALLASGDIEVVGEADDGAAALALIRELA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +       +   +  +E             L                
Sbjct: 50  ----PDVALLDYRMPELDGSQVAAAVRRAEL--------ATRVLLLSAHDESAIVYHALQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +       A I   ++       ++       +   A       +          
Sbjct: 98  EGAAGFLPKESTRAEIVKAVLDCAQGRDVLPASLAVGL---AGEVRRRSEPVGPA----- 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+GRE E L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  
Sbjct: 150 -LSGREKEVLALIARGQSIPTIAGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRG 208

Query: 245 IV 246
           ++
Sbjct: 209 LL 210


>gi|87199258|ref|YP_496515.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134939|gb|ABD25681.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 208

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 59/216 (27%), Gaps = 16/216 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       ++  +  T      T   G      ++        LD  +       
Sbjct: 4   VLVADDHGFIRAGVEAVLRGTRFSVVATTASGEETLDAIKTHDPAVVLLDINMPGMNGVQ 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +      +   V+               + I+      +   S       +   L 
Sbjct: 64  ALEALRERGDKR--PVVL------LTAEINDRQLISVMRAGVDGIVSKDGAEEGLVEVLE 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    + I  + L     L+              G   +L  RE +    ++ G  + +
Sbjct: 116 KVHAGQKAIEPNFLQRALDLSLR--------PDSQGPLAKLNPRERKIAALVARGMRNRD 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           I   LGI   TV  Y+ ++ +K     R+     AV
Sbjct: 168 IGAELGIGEGTVKVYLHTMYQKLGIDNRTELALLAV 203


>gi|78063367|ref|YP_373275.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77971252|gb|ABB12631.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 214

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   G++   LV         LD  + +   
Sbjct: 3   RVILADDHAVMRDGLRYILETAGGFEIVGEASDGSATLALVERGAADVLLLDLSMPAPTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+R +                 L   +                 Y +     A +   
Sbjct: 63  IELIRLVKRQA--------PSLRTLVLTMHAEAQYAARAFKAGATGYLTKDSATAELVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +       + L                     L+ RE++ +  I  G+T 
Sbjct: 115 VGKVAAGGVYVSPSAAESLALTL--------RTPAATLPHERLSARELDVMRRIVAGQTV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L +S  TV+ Y   I+ K      +  + YAVR+++
Sbjct: 167 TQIATELALSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 208


>gi|327334996|gb|EGE76707.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1]
          Length = 179

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 54/208 (25%), Gaps = 29/208 (13%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++  +          E VG          L Q+   D  +       L      +E    
Sbjct: 1   MEDDLEIVGTCGRGDEVVG----------LVQDTYADVCLLDIEMPGLDGITVAAELRDQ 50

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                    L    F                +         +   +  +   GR I    
Sbjct: 51  AP---WCRILIVTTFGRPGYLRRAMDAGVAGFLVKDTPAEDLAQVVRKVHAGGRAIDPAL 107

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             E                        L+GRE E L     G +   IA  L +S  TV 
Sbjct: 108 AAE----------------SLIEGHNPLSGREREILRLAESGASISLIASELCLSVGTVR 151

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N+++S + KT    R+ A   A R   +
Sbjct: 152 NHVSSAIGKTGAANRTEAAVTARRRGWL 179


>gi|331698232|ref|YP_004334471.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952921|gb|AEA26618.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 204

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 63/231 (27%), Gaps = 29/231 (12%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R             LA M+ L+  +    ++       G                LD
Sbjct: 3   DPIRVLLADDQALVRGALAAMLGLEPDIEIVAQVGT-----GDEVGPAAARTKPDVALLD 57

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +           L     +    F                +     
Sbjct: 58  VQMPGIDGLAAAALLHEQ--------LPSCRVVVLTTFGRPGYLARAMRAGAAGFVVKDS 109

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++   +  +    R++      E                        LT RE + L 
Sbjct: 110 PPEQLVDAVRRVHAGLRVVDPALAAE----------------SLSQGTSPLTERERDVLV 153

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++G T  +IA  L +S  TV N+++S + KT  +TR+ A+  A  N  +
Sbjct: 154 AAADGATVADIARRLHLSEGTVRNHLSSAIGKTDARTRAEAVRIADGNGWL 204


>gi|86604925|ref|YP_473688.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553467|gb|ABC98425.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 198

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 58/222 (26%), Gaps = 29/222 (13%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     + L   +             G+      R    +   LD  +      
Sbjct: 6   RVLIADDHPLFRLGLKFALQAQGFEVVAEAETGSQAVEYCRRCPVEVALLDVRMPDGDGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +          V+          F                Y S   D A +   +
Sbjct: 66  LACQQIVELGL----PVVVVMMTT----FQEPGLIEAARRAGAKGYLSKETDPAELARVI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +             E+                      +LT RE+  L  + EG  + 
Sbjct: 118 RQILSNPERDWLPARQEL---------------------PKLTPRELCVLQLMKEGLANK 156

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  LG+S  TV  Y ++  RK     R  A+  A +  I+
Sbjct: 157 QIARRLGLSIETVKEYASAAYRKLDASDRVTALLKAQQLGIL 198


>gi|226195323|ref|ZP_03790912.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
 gi|254298568|ref|ZP_04966020.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|157808332|gb|EDO85502.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           406e]
 gi|225932525|gb|EEH28523.1| putative DNA-binding response regulator [Burkholderia pseudomallei
           Pakistan 9]
          Length = 275

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 32/236 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D +R   +  L  + D   R    +    W  +   L +       ++            
Sbjct: 5   DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLIVV------------ 48

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
                    D      L +                    +                S T 
Sbjct: 49  ---------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLGVISRTT 99

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGRE 190
               I   L ++   G  +    L      A  +    ++      +        L+ R+
Sbjct: 100 RPHLIVRALEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCSLLSPRQ 159

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N  +
Sbjct: 160 AQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 213


>gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 190

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 24/190 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA      +        LD  +           +           +     +        
Sbjct: 25  GAEILPRAKELRPDVAVLDIDLPGVDGLTAAGELHT--------AVPECRTMMLTSLGRP 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                  A   + +        ++   +  +    R+I    +                 
Sbjct: 77  GNLRRALAAHVSGFLLKDSTPDKLCDAIRAVAKGERVIDPQLV----------------L 120

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K   LT RE+E L   S+G+ S +IA  L +S  TV NY+ S++ K   + R  A
Sbjct: 121 AALDDKPQPLTPRELEVLLLASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDA 180

Query: 237 IAYAVRNNIV 246
           I  A     +
Sbjct: 181 IRIAREAGWL 190


>gi|57233544|ref|YP_180843.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57223992|gb|AAW39049.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 236

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  + E     +  +  R D L  +            +             L+   
Sbjct: 19  ISVVIIDDHEIVRQGLMAMLRREDGLCLVG---DASDAVTGLK------------LIDAT 63

Query: 68  LFQEQKLDSIV--SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                 LD  +  S    F L + +     DK          +    F +    I     
Sbjct: 64  NPDVVLLDIQLNNSDMDGFSLAKQIKSKSPDKI--------VIMLTGFDSALYLIESLRT 115

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +       A I   + + +          L    +            ++    D +
Sbjct: 116 RLDGFVLKEQSGAIIAGAIRMAYAGVGAWDTRILHRALVNRLKAHTGDTIDNLGIKADID 175

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  +E      ++ G ++ +I   L  + +TV  Y+ + M+K     R+     A    
Sbjct: 176 LNDKERMVFNLLARGYSNKDIESTLKYTASTVKKYVYTCMKKFGVSNRTQLALIANSTG 234


>gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 228

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 23/246 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN   + + +++          +  +   S  +  +            +  L        
Sbjct: 1   MNDASKPLRLLIASAHPIVCEGLRAMLAGSPDIQLLAIATSLPETIRLVGEL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                       +   ++   +        ALS     +  L         +    PE +
Sbjct: 53  ------------QPQVLLIDTYIHQGATLKALSMIHGEWPALAIV---GLAMHADDPEFL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                     C             +        +L+  L    L     A   +      
Sbjct: 98  LACLQTGMVTCLPLHASRTTLHQALTASVHKETLLQHALVRSLLERIEGATPVEERSSAQ 157

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +LT RE+E LT ++ G+ + EIA  L IS  TV  ++A+I  K    +R+ A+A A
Sbjct: 158 AQRVDLTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVDSRASAVAVA 217

Query: 241 VRNNIV 246
           ++  ++
Sbjct: 218 MKRGLL 223


>gi|220927003|ref|YP_002502305.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219951610|gb|ACL62002.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 219

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 65/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I+L  +          L  R   L+ +   D                    + L +  
Sbjct: 3   TTILLVDDHPVVREGYRRLLERQPGLSVIAEADTAAE---------------AYRLYKAH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +R +   +        ++   L   +               
Sbjct: 48  APALVILDLSLPGPSGIEAIRHIRQWD--------RQARILVFTMRQGAALAAKAFEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    R +  D    +                       L+
Sbjct: 100 AGYVTKASPPRELVEAVGTVMRGARAMSADIARALA---------EAEVARGRSALDGLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L   + G TS  IA  L +S  TV+N ++ I  K   +T +  +  A    +V
Sbjct: 151 PREVEILALAAAGATSKAIAEALCLSLKTVHNNLSLIKAKLGARTDAHLVWIAAGAGLV 209


>gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp.
           BH72]
          Length = 208

 Score = 96.1 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 71/237 (29%), Gaps = 33/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       ++   +R +     +          ++    ++            
Sbjct: 2   TKILIVEDHALVREAMAQTLSRLEPGIDCVEAKGADDALAKLEGAADW------------ 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++     F L+  +A    D    V+                      G  
Sbjct: 50  --DLAIIDLMLPDMNGFSLLAVLAKRFPDIPAIVV--------SAMDDEASVRRAIKGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + S       +   + ++   G                      +       + F LT
Sbjct: 100 SGFVSKASSGDTLLQAVRVVLDGGVCTPEAAT-----------QSGRRSAAPVSERFGLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             +   L  +++GKT+ EIA +LG+S  TV  ++++I R      R+ A+    R+ 
Sbjct: 149 AAQTRVLELLAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNRAQALVVIARHG 205


>gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 200

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 62/239 (25%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S L      +  +       +    +  L               
Sbjct: 2   IRILLAEDQAMVRGALSALLGLEPDIEVLGSAADGEAAWRMLQQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +A  E             +    F              
Sbjct: 47  QPDILVTDIEMPGLSGLELAQRIARHELPI--------KVVIVTTFARAGFLRRALEAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +    R I      +                  W +   LT
Sbjct: 99  LGYLLKDAPAENLADALRKVKQGIRAIDPQLALDA-----------------WSQADPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R  A   A +   +
Sbjct: 142 DRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRMARQKGWL 200


>gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 200

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 62/239 (25%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S L      +  +       +    +  L               
Sbjct: 2   IRILLAEDQAMVRGALSALLGLEPDIEVLGSAADGEAAWRMLQQL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +A  E             +    F              
Sbjct: 47  QPDILVTDIEMPGLSGLELAQRIARHELPI--------KVVIVTTFARAGFLRRALEAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   L  +    R I      +                  W +   LT
Sbjct: 99  LGYLLKDAPAENLADALRKVKQGIRAIDPQLALDA-----------------WSQADPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+T+ EIA  LG+S  TV NY++  + K     R  A   A +   +
Sbjct: 142 DRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|300716380|ref|YP_003741183.1| two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
 gi|299062216|emb|CAX59333.1| Two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
          Length = 205

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 37/238 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       V  L  +S  L  +   D  V    +   L                
Sbjct: 3   KVIIVDDHPVIRFAVKMLLEKS-GLEVVAETDNGVDALTKAREL---------------E 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     F ++  +   +             L      +    +       +
Sbjct: 47  PDLVLLDIGLPKIDGFQVIERLRALDMP--------LKILVLTSQASAHFALRCQQTGAD 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + + T D++ +   + L+        +              N F +      +  +L+ 
Sbjct: 99  GFVTKTDDLSELVDAIKLVMRGISYFPQ-------------YNRFIAPTTQSEQLEQLSD 145

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  +++G  + +IA  L +S  T++ Y   +  K    T    I +A  NN++
Sbjct: 146 RELSVLMMLAKGMGNKQIADQLVLSEKTISTYKHRLKIKLNAATLIELIDFARNNNLI 203


>gi|289669289|ref|ZP_06490364.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 200

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +  +       S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDIEVVGSAGDGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 47  QPDVLVTDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AGYLLKDAPAEQLVDALRQVQRGGRVIDPQLAIDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 142 ERERTILRLAGEGRSTSEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|77410614|ref|ZP_00786974.1| response regulator [Streptococcus agalactiae CJB111]
 gi|77163329|gb|EAO74280.1| response regulator [Streptococcus agalactiae CJB111]
          Length = 196

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 49/242 (20%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L    + ++ +                    G     ++   
Sbjct: 1   MKLLVAEDQSTLRDAMCQLLLMEESVSTIDQAGN---------------GGEAIAILSNK 45

Query: 68  LFQEQKLDSIVSSDWPFD---LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 LD  +      D    VR                   +    F           
Sbjct: 46  AIDVAILDVEMPILSGLDVLEWVRKYQN------------VKVIIVTTFKRSGYFQRAIR 93

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y      VA +   +  +   G+    + +  +                      
Sbjct: 94  SNVDAYVLKDRSVADLMKTIQKVLSGGKEYSPELMENVI-------------------SN 134

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R  A+  A   +
Sbjct: 135 PLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNRLEALKIAREKD 194

Query: 245 IV 246
            +
Sbjct: 195 WL 196


>gi|262283291|ref|ZP_06061057.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262260782|gb|EEY79482.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 199

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 67/225 (29%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V    +        G      ++ +      LD  + + 
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVEEVYQAE-----DGQKAIDCLKSETLDVAILDVEMPNK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKENRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIHTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199


>gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 204

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 72/227 (31%), Gaps = 29/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + LA ++ L+  +   +++       G       R        LD  + 
Sbjct: 7   VLLAEDQSMVREALAALLGLEDDIEVVVQVAR-----GDEVLAAARAHAVDVALLDIEMP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +     A +E  +   V++         F       +      + +       A+
Sbjct: 62  GATGIE-----AAAELHRALPVVKLV---VLTTFGRPGYLRSAMEAGADAFLVKDAPAAQ 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R+I            A                  LT RE E L   ++
Sbjct: 114 LADAVRRVLAGERVIDPTLAAAALAGGA----------------NPLTDREREVLRAAAD 157

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ E+A  L +S  TV NY+++ ++K A + R+ A+  A     +
Sbjct: 158 GSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAVRTAREKGWL 204


>gi|258653777|ref|YP_003202933.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258557002|gb|ACV79944.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 209

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +       V       + +               +  +               
Sbjct: 3   TRVLLVDDHPVVRRGVRATIEVDETITVAGEAGSGEQALALLAEV--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              E  +D ++        +     + + +     + P  L    + T  + +       
Sbjct: 48  ---ELAVDVVLLDLQLGAGIDGAETTRRIQRLP--RPPRVLVLTTYDTDADILPAIEAGA 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D A +   +        ++       +                       LT
Sbjct: 103 TGYLLKDTDPAELIAAIHAAAAGDTVLAPSVATRL-------------VSRVRAPGIMLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +++G ++  IA  L I+  TV +++  +  K    +R+ A A A +  ++
Sbjct: 150 PRETQVLQMVADGLSNQGIAKELFITEATVKSHLVQVFTKLGVDSRTAATAAARQRGLI 208


>gi|218295514|ref|ZP_03496327.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
 gi|218244146|gb|EED10672.1| two component transcriptional regulator, LuxR family [Thermus
           aquaticus Y51MC23]
          Length = 192

 Score = 95.7 bits (237), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 56/222 (25%), Gaps = 32/222 (14%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     + L   +             G                LD  +      
Sbjct: 2   RVLIADDHPLFRLGLKAGLEAQGLAVVAEAENGQEALDKALALKPDAVLLDLRMPGMDGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +             R    F   +              + Y S       ++  L
Sbjct: 62  TCARKLRERGY--------RGLIAFLTTYQEPALLKEAALAGADAYFSKELSAPELKRRL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +      +                               LT RE E L  +++G +  
Sbjct: 114 LRVMQGEERLTP------------------------PDLPSLTPREGEVLALLAQGLSVK 149

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  LG+S +TV +++ ++  K   + R  A+  A     +
Sbjct: 150 EMAKALGLSPDTVKDHLENLYAKLEARNRVEALEKARSLGFL 191


>gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 208

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 67/235 (28%), Gaps = 35/235 (14%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ E   R   V            ++     V   +     TE +      L +      
Sbjct: 8   IDSERRLRVLVVDDHDVVHWGFRLLLGEQSWVERCVAARNATEALE-----LTKRYRPHV 62

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  V  +   D                 +                    A   + + 
Sbjct: 63  ALVDLFVGDESGAD-----ICESVRSTSPETRVLLISGAGRISPH----AAKAAGASGFV 113

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S  +    + + + ++     +                                L+ RE 
Sbjct: 114 SKDWGAHDVAMAVRMVGLGMTMFPPQA---------------------DQPSTLLSEREQ 152

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT I+ G T+ EIA  L +S +TV  + +++ RK   + R+ A+  A R  ++
Sbjct: 153 EVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQRIGLL 207


>gi|282853345|ref|ZP_06262682.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582798|gb|EFB88178.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922375|gb|EFS86206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965323|gb|EFT09422.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982600|gb|EFT26692.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091123|gb|EFT63099.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094209|gb|EFT66185.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104865|gb|EFT76841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329268|gb|EGE71028.1| two-component system response regulator [Propionibacterium acnes
           HL103PA1]
          Length = 218

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 61/242 (25%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +D      V  +   +D L  +           +                
Sbjct: 1   MLPVRVLLVDDDTLVRRAVRQILEAADDLEVVGEASDGDGAVRQA--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S              +      T         
Sbjct: 46  --PQADVVLMDLRIPGMSGVEATSRITHSPSSP--------KVVVLTTVTTDAAITDAIH 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T     I   +         +      ++           + +        
Sbjct: 96  AGALGFLLKTSSPEDIVSAVRAAHTGDAFMSPTSTRQLLEQLRSDTGR-RGHRAARKTLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++EG T+D IA  L IS +TV  ++++I  K    +R        R  
Sbjct: 155 ALTDREREVAIAVAEGLTNDAIAARLNISASTVKAHLSTIQTKLNVDSRVRIAVLVERAG 214

Query: 245 IV 246
            +
Sbjct: 215 YL 216


>gi|88859041|ref|ZP_01133682.1| putative regulator in two-component regulatory system; LuxR family
           protein [Pseudoalteromonas tunicata D2]
 gi|88819267|gb|EAR29081.1| putative regulator in two-component regulatory system; LuxR family
           protein [Pseudoalteromonas tunicata D2]
          Length = 217

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 68/220 (30%), Gaps = 17/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +++ +  D    +   +           E + + +F      L Q  +LD ++       
Sbjct: 1   MSQFLIADDHPLFREALKGALQSAFSDLEVLESDNFEATLELLKQYDELDILLLDLHMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                 L    + Y  L             +             +   +     I   + 
Sbjct: 61  NDDLYGLIRIREDYPDLPIVVVSG---SEEIQVVSKVMGYGAMGFIPKSSSSTEIADAIS 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      +          L    A++         +   LT ++ + L+++ EG  + +
Sbjct: 118 QILEGDTWLPTK-------LKDQVADLTGDEVGIATQIASLTPQQYKVLSYLHEGLLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 171 IAYELHISEATVKAHITAIFRKLGVYNRTQAVLIASKLQL 210


>gi|227540768|ref|ZP_03970817.1| LuxR family response regulator [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183444|gb|EEI64416.1| LuxR family response regulator [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 224

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 69/237 (29%), Gaps = 26/237 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I+ + +++  ++    S +    +  D +  +       +    +  +            
Sbjct: 7   IEPIKVLIVDDEAVVLSSLRKYFSMVDDIEVVAEATNGNAALATLKNM------------ 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +       L+  ++                +      T    +   +
Sbjct: 55  ---PVDVVLADIHMEGMDGIALLDHISSFPHPP--------AFVALTGIDTDDNMLRVLS 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   +   A+I   +         +       +  +  +      +     G++ 
Sbjct: 104 MGAAGYVVKSARPAQIIESIYSAAADNIALSS---MCLARILEHIPQHSNALPTVAGENI 160

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT  E + L  + +G ++ EIA     + +TV  ++++++      +R      A+
Sbjct: 161 QLTPAEQKVLALLCQGLSNAEIAKQANYAESTVKRHVSNLISYFGASSRLSLALVAL 217


>gi|110224491|emb|CAJ86500.1| quorum-sensing transcriptional regulator [Serratia marcescens]
          Length = 248

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 26/188 (13%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP------------ENITPPAGMDNRYCS 132
           +       +       VL   +    P                   ++     + N Y  
Sbjct: 52  EWFEFYIKNNYQFIDPVLITASHRITPFTWDKDLEIGSGLKLPKIFDMAKNYNIINGYTF 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSYDVHWGKDFEL- 186
           +  D     + L ++  K      ++       EI +L         +         +  
Sbjct: 112 VLHDHHHNLVVLSIMLDKHCDTDVEQQIDNNKAEIQMLLITMHGKMTALYQEMSTPADFE 171

Query: 187 --------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                   + RE E + W S GK+  EIA+ILGI   TV  +I + ++K        AI 
Sbjct: 172 KMNQREFFSKRENEIIYWASLGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIR 231

Query: 239 YAVRNNIV 246
             V   ++
Sbjct: 232 LGVELQLI 239


>gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 204

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++    + V+ L    D L  +                    G     +    
Sbjct: 5   IRVLLADDENLIRTAVATLLGLEDDLDVVAQAAT---------------GDEALAVALRT 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++   +A         ++                     A   
Sbjct: 50  TPDVAVLDLQMPGLDGIEVAERLATQLPGCRCIIV--------TSHGRPGYLKRALAVGV 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +   GR +  +   E                     D  LT
Sbjct: 102 RGFLPKTASALVVADVVRSVHAGGRYVDPELAAE----------------AIASGDSPLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L   ++G   DEIA  + +S  TV NY+++ + K     R  A A A R+  +
Sbjct: 146 AREADVLALAADGSPVDEIAQRVSLSAGTVRNYLSTAVMKLGVSNRHEAAATARRHGWI 204


>gi|213691387|ref|YP_002321973.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522848|gb|ACJ51595.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457459|dbj|BAJ68080.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 235

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 65/233 (27%), Gaps = 10/233 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R+D  +   V  +         M+  D  +  + +     + +           L    
Sbjct: 4   ARDDIIKVMLVDDMRGARTGFMMMLNNDPNIIVSSQAADGAQAIEF--LRQSPQQLPDVI 61

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      +    +           +Q         +          A   + +  
Sbjct: 62  LMDVRMPVMDGIEATGIIKEQF-----PQIQIL---ILTTYDEDDYAFDGLARGASGFLL 113

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 ++R  +  ++    ++      E+        +      +       L+ RE E
Sbjct: 114 KDATPKQLRDAVHAVYNGDAVLTPRITGEVLNRGVRPISDNTRIKLLRSLFDGLSKREYE 173

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               ++ G ++ EIA  L I   +V   ++ I+ +   + R        ++ +
Sbjct: 174 VAELVAAGLSNQEIAEHLFIETTSVRRTVSRILARMHMRDRVQIAIAWYQSGL 226


>gi|291299394|ref|YP_003510672.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290568614|gb|ADD41579.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 215

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 58/232 (25%), Gaps = 25/232 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + +  +    D +  +            +                 D
Sbjct: 2   ITVLIVDDEALVRAGIRMILAPVDDIEVVAEAADGAEALAAIDR---------------D 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +        +R                   +    F              
Sbjct: 47  RPDVVLMDVRMPGMDGLTALRETLRRPAPPQ--------VIMLTTFDMDEYVHGALHAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +     ++       +  + AY             +   LT
Sbjct: 99  AGFLLKDTPPRDLAAAVRTVAEGHAMLAPSVTRRL--IDAYSGQPPVVGREARQRLAALT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE + +  ++ G ++ +IA  LG++  TV  +++  + K     R      
Sbjct: 157 PRERDVIAAVALGLSNSQIAGRLGMTETTVKAHVSRSLTKLGLSNRVQLALL 208


>gi|219849451|ref|YP_002463884.1| LuxR family two component transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543710|gb|ACL25448.1| two component transcriptional regulator, LuxR family [Chloroflexus
           aggregans DSM 9485]
          Length = 352

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 18/224 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             ++ +    D       L   ++       ++E   G     ++         +D  + 
Sbjct: 1   MGITRVVLADDHAVVRAGLRTALAALPDCEVVSEAATGPQLLAVLAQHHPDLLVVDVAMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
              P   +R +        Y  ++         +      +   A   N Y      ++ 
Sbjct: 61  DFDPIATIRQIHAD-----YPAMKILVVS---AYDDQSYVVGLLAAGVNGYHLKDQPLSD 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +++ +  +   G  I    L  +   A   A               LT R+ + L  I++
Sbjct: 113 LQLAVQRIMAGGNWISSPLLSRLIQAAPQIA---------HSSPITLTKRQRDLLRLIAQ 163

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G  +  +A  + +S  T+ N++ ++ R     +R  A  +A+R+
Sbjct: 164 GYDNRRMAQEMDLSIKTIENHLTALYRTIRVSSRLEAYQFALRH 207


>gi|217968637|ref|YP_002353871.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217505964|gb|ACK52975.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 213

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 68/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V  L T+    A +    C      ++ A                
Sbjct: 1   MKLLIVDDHPVMRFGVRQLVTQRWPDAVIGEASCLAQALEQVRAA--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            ++   LD  +      + +  +                 L   +               
Sbjct: 46  EWELAVLDLSMPDTSGLEGLVRLHR--------AAPLTRLLVLSMHDEAAYAARALQLGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +    R I  D       LAA  A++             L+
Sbjct: 98  AGYLTKEHATTELVAAIERVRSGQRYISSD-------LAARLADLLSGEAPARAPHETLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  I+ G  + EIA I+ +S  TV  Y + I+ KT     +    Y   + +V
Sbjct: 151 AQEYRVLLLIAAGHGASEIAEIMHLSVKTVGTYRSRIIDKTGLANTAEMARYCSEHGLV 209


>gi|50954488|ref|YP_061776.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950970|gb|AAT88671.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 212

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 33/225 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  +     + +  L      +  +               LT              
Sbjct: 5   IRLVLADDHPVVRAGLRALFATEPDIEVLAEAGTPDEAVSLGERLT-------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++                  +   + Q P  L    + T  + +       
Sbjct: 51  ------PDVVLMDLQFGAGANGDGTIATRRLRGLPQPPRVLVLTNYDTDADILGAVEAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y       A +   +         +       +G                      L+
Sbjct: 105 SGYLLKDAPPAELIAAVRAAATGESALAPAVSARLG-------------SRREKHSSRLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           GRE+E L  ++ G+T+  I   L +S  TV +++  I  K    +
Sbjct: 152 GREIEVLGLVAGGQTNAGIGRELFLSEATVKSHLVHIFAKLGVSS 196


>gi|323163987|gb|EFZ49795.1| response regulator [Shigella sonnei 53G]
          Length = 194

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 17/187 (9%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
               +R        +D  +     F  ++ +   +             LF          
Sbjct: 25  TIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYA 76

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                   N + S   D   I   + ++         + L  I                +
Sbjct: 77  GRAIQAGANGFVSKCNDQNDIFHPVQMILSGYTFFPSETLNYI---------KSNKCSTN 127

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ REV  L ++  G ++ EIA  L +S  TV+ + ++I  K    +    I Y
Sbjct: 128 SSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDY 187

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 188 AKLYELI 194


>gi|300311730|ref|YP_003775822.1| LuxR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074515|gb|ADJ63914.1| LuxR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 71/255 (27%), Gaps = 30/255 (11%)

Query: 18  QRTSFVSH--LPTRSDLLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKL 74
            R  ++S   L     ++  +   + +V     +   L + + A +F    WD     + 
Sbjct: 1   MRRVYISDEKLKLLEQIMWGLNTCNSSVEVRDFVSTRLLKLLDADYFASYTWD-DDNHRF 59

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT------------P 122
            + VS +     +             +      L  P   T    +              
Sbjct: 60  GNTVSVNMDPANLANY-ERYYQYCDPITFELQRLSVPTLVTQVMPMEQLRRTEFFNDFLA 118

Query: 123 PAGMDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             G+        +D  R    + +    +     RD L  + L+        +    H  
Sbjct: 119 RDGLCFGVNMFAYDGDRNIGDIRIWRSARRENFDRDALKLLALIRPAFTLALQRARAHCS 178

Query: 182 ------------KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                           L+ RE      I  G +  EIA  L I  +TV  +I  I +K  
Sbjct: 179 AAAASPDAGALLTPTPLSERESHLAQCICRGLSDKEIARELHIEFSTVRTHITRIFKKLN 238

Query: 230 TKTRSGAIAYAVRNN 244
              R+  +   +   
Sbjct: 239 VGNRTQLVKRLIDGG 253


>gi|72160692|ref|YP_288349.1| LuxR response regulator receiver [Thermobifida fusca YX]
 gi|71914424|gb|AAZ54326.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida
           fusca YX]
          Length = 201

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +VL  ++      ++ L    D +  +  +                 G      V   
Sbjct: 2   IRVVLADDERLVRGAIATLLNLEDDVEVVAEVGR---------------GDEVVATVVKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +    +           +     L    F          A   
Sbjct: 47  RADIAVLDVEMPGMTGLEAAAALHQE--------VPSCGILILTSFGRPGYLRRALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +    V ++   +  ++  GR I  +   +  +                  +  LT
Sbjct: 99  RGFLAKDAPVDQLAGAIRTVYRGGRFIDSELAADAMMAG----------------ENPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   S G +   IA  L +S  TV NY++S + K     R  AI  A     +
Sbjct: 143 AREIDVLRAASTGASVAAIARTLHLSEGTVRNYLSSAISKLGEANRIAAIRKANAMGWL 201


>gi|16264198|ref|NP_436990.1| putative sensory transduction DNA-binding response regulator
           protein [Sinorhizobium meliloti 1021]
 gi|15140323|emb|CAC48850.1| putative sensory transduction DNA-binding response regulator
           protein [Sinorhizobium meliloti 1021]
          Length = 214

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 21/226 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V       D L R++  +             + + A     +         +D  +
Sbjct: 4   RILVVDDHRIVLDGLRRLLGAESGWEVVATCRTAADAIEA-----LASKPVDLAVVDLRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 DL+R +   +      +L            +  E         +         +
Sbjct: 59  PEMGGSDLIRRLRSDQPRLACVIL--------TADISDEELAEAIENGVSGIVLKEQAPS 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWI 197
            +   +  +           L           +  +  D       + LT RE+E     
Sbjct: 111 ALIECIRAVLEGRTYFTDRSLNA-------AIDRIRESDTERRSVMQKLTPRELEISCLA 163

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + G  S EIA  LGI+  TV  ++ S+  K    TR      + R 
Sbjct: 164 AAGLRSREIAARLGIAPGTVKLHLHSVYSKLNIATRVELANISQRL 209


>gi|297581538|ref|ZP_06943461.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297534376|gb|EFH73214.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLEALLTLLNKESE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +                LL  +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHL-----LLDGFVGNDLAE------KVAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|320532105|ref|ZP_08032984.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135680|gb|EFW27749.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 226

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 34/246 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +S + +  D +  +         T R   LT              
Sbjct: 1   MRVLIVDDDALVAQSLSTILSVEDDVEVVGLGCSGPEATERYRELT-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +   +             +F   F      +       
Sbjct: 47  -PDILLMDIQMPGGDGLSAAEQILAEDG--------GARIVFLTTFSDDEYIVRALKMGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---- 183
             Y     DVA++   L  +     ++  + L     +        +             
Sbjct: 98  RGYLIK-QDVAQVAPALRSVMAGVCVLEGEVLERSTTMGLSGGTAGREQSEGSRGPSAKD 156

Query: 184 ------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+   
Sbjct: 157 LRSTAFAALTDREYEVVEAVAEGLDNAEAAARLFVSEGTVRNHISAILAKLGLRNRTQVA 216

Query: 238 AYAVRN 243
               R+
Sbjct: 217 VMYYRS 222


>gi|302035957|ref|YP_003796279.1| LuxR family transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300604021|emb|CBK40353.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira
           defluvii]
          Length = 226

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 68/234 (29%), Gaps = 29/234 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            IVL  +       +     R+     +            +  L                
Sbjct: 8   RIVLIDDSRMARLGLREQLNRTAEFRLVGEAASMTEGLELIEKL---------------N 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +           +     D           L   V+          A    
Sbjct: 53  PDLVLLDISLPDGSGVHACSRLVAGRPD--------TRVLILSVYDDPAVIREAIAAGAQ 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y      VA  R  +      G ++    +  + +     AN   +  +      +L+ 
Sbjct: 105 GYVLKDTPVAMWRNAMRRAAGSGVVLGPQLIGLVLMEVREMANGLTTACMG-----DLSP 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAV 241
           +E   L  ++EG+T+ EIAV L +S  TV NYI+++  K     RS  A  YA 
Sbjct: 160 QERRLLPLVAEGRTNKEIAVALSLSDKTVKNYISNMYSKLGVTRRSQVATLYAR 213


>gi|260060932|ref|YP_003194012.1| LuxR family transcriptional regulator [Robiginitalea biformata
           HTCC2501]
 gi|88785064|gb|EAR16233.1| transcriptional regulator, LuxR family protein [Robiginitalea
           biformata HTCC2501]
          Length = 139

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 16/144 (11%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
                                  Y S T D   I   L              L+ +  + 
Sbjct: 3   RTIWIFSALALAVWILLRIGRLGYYSGTTDPEWIFGSL------------AVLFLLIGMG 50

Query: 167 AYQANMF----KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +        +  D    +   LT RE E L  + +G ++ EIA  L IS +TV  +++
Sbjct: 51  LQRHARPKPPSREADQRKIRQLGLTPRECEVLLPLCKGLSNREIADELHISESTVKTHVS 110

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +++ K   + R+  I  A   N++
Sbjct: 111 NLLVKLDVRRRTQVIRKARALNLL 134


>gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis
           SP1PR4]
 gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis
           SP1PR4]
          Length = 236

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 12/184 (6%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L   +  ++  +D ++  +   D +  +  S +            +       +      
Sbjct: 56  LTPTEALRDSAIDLVLVDNPILDDLLAIITSFRRGR----PALRVVTLGPVVGMDVIERI 111

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A     Y + T     +R+ + ++        R  L  +           +S +     
Sbjct: 112 IAAGAKGYLTYTSGPGDLRMAIEVVRDGSVWAPRKVLSRL--------MDLRSPEEKERP 163

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   T RE + L  ++ G T+ +IA  L I   T   ++  ++RK     R G   YAV 
Sbjct: 164 ELRFTPREKQVLELLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPNRVGLALYAVE 223

Query: 243 NNIV 246
             IV
Sbjct: 224 KQIV 227


>gi|270264144|ref|ZP_06192411.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041793|gb|EFA14890.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 247

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 29/190 (15%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITPPAGMDNRYC 131
            D       S       VL   +    P                   +      + N Y 
Sbjct: 51  MDWFELYTKSNFQFIDPVLITASNRITPFLWDENLIIESGVKFSKLFDAAKYYNIVNGYT 110

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDR------LWEIGLLAAYQANMF---------KSY 176
            +  D     + L         +  +R        +I +L                   Y
Sbjct: 111 FVLHDHHHNLVVLSFFL--DAPLSENRGKLEKNKNKIQMLLINTHEKLITDYQSVSSARY 168

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                     + RE + L   S GK+  EIA+ILG+   T+  +I + ++K        A
Sbjct: 169 FERINDKEIFSDRENDVLYLASMGKSYPEIALILGVKLTTIKYHIGNAVKKLGVTNAKHA 228

Query: 237 IAYAVRNNIV 246
           I   V   ++
Sbjct: 229 IRLGVELQLI 238


>gi|254443862|ref|ZP_05057338.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198258170|gb|EDY82478.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 220

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 63/227 (27%), Gaps = 22/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      D L R+I           +       G   + L          LD  + 
Sbjct: 14  VVVAEDETLFRDFLVRIIRQRFGFEIIGEV-----ATGEEAYQLCDDHRPDLVILDLRLP 68

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L   +   +        +                 +        + +   + + 
Sbjct: 69  GITGQELAERLINEQ-----PEAKILIISS---VEDPKRIGSLLQMGVTGFLNKKEEFSV 120

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
               +  +      +      +         +              L+ RE + + +++ 
Sbjct: 121 FEQAIEAVANGNIFVKASAQTQ---------SDSPDVLDQKELLETLSDREKQIVVFVAS 171

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ EIA  LG+S  TV ++ ++I +K      +G   +AVR  +V
Sbjct: 172 GMTNKEIAQNLGLSIKTVESHRSNISKKLKIFDIAGVTLFAVRTGLV 218


>gi|332672165|ref|YP_004455173.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332341203|gb|AEE47786.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 224

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 16/231 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D  A    L   +             G +     R        +D  +    
Sbjct: 1   MTRVLLADDHAAIRAGLRLLLEQGGIEVVGEAADGQAAITNARALRPDVVLMDVRMPGVD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +                 +    F      +         +   T   A +  
Sbjct: 61  GIEATRVITREGLAD---------VVALTTFDLDEYVLGMLRAGAVGFLLKTTGAAALVD 111

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLT 195
            +  +     ++  +    +       A    +     G           LT RE + L 
Sbjct: 112 AVQRVAAGDGVLAPEVTRRLLADLVAAAPAADTPTAAPGAGGVHAAAVASLTARERDVLA 171

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++ E+A  L I+  T   +++ ++ K    +R  A   AV   +V
Sbjct: 172 CLGAGMSNAELADALVITEATAKTHVSRVLAKLGCASRVQAAIVAVEAGVV 222


>gi|87124675|ref|ZP_01080523.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9917]
 gi|86167554|gb|EAQ68813.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9917]
          Length = 188

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 17/126 (13%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRI----GLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
            +       +    ++     +       L  +   G  I  D   +I ++         
Sbjct: 66  VMEAMDSGADGVVFISSIGGGVDGDFYKALERVVSGGTYIPSDVQDKISMI--------- 116

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     +L+ +E+E +  +++G ++ EI+  L +S  TV +++ SI  K A ++R+
Sbjct: 117 ----RPPGWDDLSKKELEVIYILADGLSNKEISEQLFVSIETVKSHLNSIYSKLAVRSRA 172

Query: 235 GAIAYA 240
            A   A
Sbjct: 173 QAAILA 178


>gi|7579039|gb|AAF64235.1|AF249735_3 putative response regulator [Pseudomonas putida]
          Length = 216

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R +    +        R++ +        R+                 D 
Sbjct: 6   ILIADDHPLFRGALRQAVTLGLGPDVRLVEVASIAELETRLSE--------------KDN 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           +    LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  WDLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEAAVVVKSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +              +        ++             LT 
Sbjct: 104 GFIPKSSTLEVIQDAVRKVLDGEVWWPPQAFERV--------DVSAEAKAASEGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|21242362|ref|NP_641944.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107798|gb|AAM36480.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 237

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 16/223 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +   +D    +  +   +     +  +     G +   +   +      +D ++    
Sbjct: 4   TRIVVAADRTILVEGMVALLQKVPGIEVVGHAEDGLACLQIAARERPDIVLVDVLLPGLN 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             DL R +     +           +         ++          Y + T   A +  
Sbjct: 64  GIDLTRRLMQRSPN--------SRAICIAPSDACTQSSAVFEAGAKAYLARTSRFAELLR 115

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      I       +           +           LT RE E +   SEG +
Sbjct: 116 AIQCVIQDQTYISPQMSRSLI-------AGLRRAAKADSAYTRLTSREREIVQLYSEGLS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L +S  TV  +  + M K   ++ +    YA+   +
Sbjct: 169 TRQIANRLHLSVKTVGTHRENCMLKLNIQSIAQLTRYAIAQGL 211


>gi|315654297|ref|ZP_07907205.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491332|gb|EFU80949.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
          Length = 201

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       ++ L      +  +            +                  
Sbjct: 2   ISVVLADDQALVRGAIAALLELEGDIEVIAQASNGRELLDAVQ---------------NH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +         + +  +  +           L    F              
Sbjct: 47  HPQVAVVDIEMPDLDGISATQAITETAAN--------TKTLILTTFGRPGYLKRALNAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +   G  + +    E                  +  D  LT
Sbjct: 99  KGFMVKETPAEELAAAVRTIAAGGTAVDQKLATE----------------SLFEGDNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L    +G    EIA  + +S  TV NY++S + KT   T +GA   A     +
Sbjct: 143 EREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAIGKTHADTSAGAARKARELGWL 201


>gi|254249561|ref|ZP_04942881.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124876062|gb|EAY66052.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 214

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +                  VG +        L +  + D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAAD-----------LSVVGEAGNADEALALAEALEPDL 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       +          + +  ++            +           + Y      
Sbjct: 59  ALMDVGMNGMNGITLAGVFHERFPGIRVLMLSM---HDNIEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASATASPLDRLTPRERDILDA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIKFAVEH 211


>gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28]
 gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90]
          Length = 171

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 15/170 (8%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIG 143
                +   +L+R      P+  +                 G+        +    +   
Sbjct: 2   AQNYAEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGL 61

Query: 144 LMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTW 196
           L  +     +   +      ++ ++                     D  LT RE E L W
Sbjct: 62  LSFVRSGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRW 121

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 122 TSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171


>gi|323170673|gb|EFZ56323.1| response regulator [Escherichia coli LT-68]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 32/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++          +  L  ++  L  ++  D                       +
Sbjct: 1   MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDY---------------RITIDYL 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        +D  +     F  ++ +   +             LF               
Sbjct: 46  RTRPVDLIIMDIDLPGTDGFTFLKRIKQIQST--------VKVLFLSSKSECFYAGRAIQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D   I   + ++         + L  I                +     
Sbjct: 98  AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI---------KSNKCSTNSSTVT 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ REV  L ++  G ++ EIA  L +   TV+ + ++I  K    +    I YA    
Sbjct: 149 VLSNREVTILRYLVSGLSNKEIADKLLLRNKTVSAHKSNIYGKLGLHSIVELIDYAKLYE 208

Query: 245 IV 246
           ++
Sbjct: 209 LI 210


>gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
 gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2]
          Length = 171

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 15/170 (8%)

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIG 143
                +   +L+R      P+  +                 G+        +    +   
Sbjct: 2   AQNYAEIDPLLRRGVNSIDPLIWSQNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGL 61

Query: 144 LMLLFPKGRIILRD---RLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTW 196
           L  +     +   +      ++ ++                     D  LT RE E L W
Sbjct: 62  LSFVRAGPALTPGEISMLRRQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRW 121

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            SEGKT++ I  IL IS  TVN +I++++ K     +  A+A A    ++
Sbjct: 122 TSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171


>gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 201

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 70/239 (29%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +     +  L    + +  +  +                 G   + ++   
Sbjct: 2   IRIVIAEDQKMLRGALVSLLKLEEDIEVVAEVSN---------------GLDAWNIITKQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++   +                 +    F              
Sbjct: 47  QPDVCLLDIEIPDITGLEIAEKLRTMGHP--------CKIMIVTTFARPGYLQKAMDAKV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +    R++  D    + L                 +D  LT
Sbjct: 99  EAYLLKDEPIEFLIEAIHKVMNGERVVSVDLTATLFL----------------KEDNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            REVE L  +  G T+ EI   L ++  TV NY++S ++K   ++R  AI  A     +
Sbjct: 143 AREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGWI 201


>gi|190574248|ref|YP_001972093.1| putative response regulator protein LuxR family [Stenotrophomonas
           maltophilia K279a]
 gi|254523173|ref|ZP_05135228.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
 gi|190012170|emb|CAQ45793.1| putative response regulator protein LuxR family [Stenotrophomonas
           maltophilia K279a]
 gi|219720764|gb|EED39289.1| two-component system response regulator, LuxR family
           [Stenotrophomonas sp. SKA14]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 61/226 (26%), Gaps = 21/226 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         LAR++     V          + +      L          +D  
Sbjct: 1   MRVLIVDDHTLVRAGLARLLQGFADVQLVAEASNAEQALQ-----LALQHAPDVVLMDLS 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  + L               +   +                 +       
Sbjct: 56  LPGRTGLEALSDIRLRA--------PGTRVVMMTMHDDAAHVRDALDRGAVGFVVKDAAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + L         +      +  +LA        +          L+ R+ E L  I
Sbjct: 108 QELELALRAAHAGQVFLSPQISAK--MLAPMLGREKPTGIAA------LSPRQREILRRI 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +G+++ EIA  LGIS  TV  + A +M     +  +  +  A R+
Sbjct: 160 GKGESNKEIAADLGISVKTVETHRARMMESLGCRRANDLLLLAARH 205


>gi|113954826|ref|YP_730328.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882177|gb|ABI47135.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 234

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 13/129 (10%)

Query: 121 TPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                  +    ++            L      G       + E                
Sbjct: 112 EAMEAGADGVMFISSIGTGDGDFINALSTTNSGGIYY-PRSVREAAT---------AKVK 161

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE++ +  I  G  + EIA  L IS  TV ++++++++K   + R+ A 
Sbjct: 162 SAPVLVDPLSERELDVIRCIIRGMRNIEIADALFISSETVKSHVSTVIQKLGVRDRTQAA 221

Query: 238 AYAVRNNIV 246
            +A+ + ++
Sbjct: 222 VFAMTHGLI 230


>gi|25028898|ref|NP_738952.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|23494185|dbj|BAC19152.1| putative transcription regulator [Corynebacterium efficiens YS-314]
          Length = 267

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 17  EQRTSFVS---HLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQ 72
           E  T  V     +    D    +  L    S    +  + T   G      +        
Sbjct: 44  EPTTPLVPMTYRILIVDDDPTILRNLPVFFSMAEDLTVVGTAAGGRDALAFMEHTPCDVI 103

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D  +      +L+  +   +             +    F T    +   A     Y +
Sbjct: 104 LSDLSMPGMSGIELLSAVRELDNPPI--------FIAMTGFDTDQAMLGVLAAGSAGYLA 155

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGRE 190
            +     +   +      G  +       +           +  +    +    EL+  E
Sbjct: 156 KSDPPESVIWSVREAIKGGTALSSSCTSRL------VDATIRRGEPPQPRALGVELSSGE 209

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E L  + +G T+ +IA  L  S   V   +++++RK    +R      A+   
Sbjct: 210 RETLDLVCQGLTNAQIARQLHYSEAAVKKQVSAMLRKFQVGSRVALAVKALGMG 263


>gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
 gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           WH 7805]
          Length = 227

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 22/186 (11%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D  +++  D +  ++               ++    +    L      T         
Sbjct: 59  AADACRKRSPDLLFVTENLGQGYGLSLARHVKEFSPETRTLVFLHR---ETQAVVREALD 115

Query: 125 GMDNRYCS-----LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                           D       L  +   G    +D     G                
Sbjct: 116 AFAEGVIFISSLGKGIDGD-FIRSLSAIAEGGNYYPQDVQTAAGYERIEVL--------- 165

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                EL+ RE+E L  +S G T+ EIA  L +S  TV  +++SI+ K   K R+ A+  
Sbjct: 166 ----PELSEREIEVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVKDRTQAVIK 221

Query: 240 AVRNNI 245
           A++  I
Sbjct: 222 AIKAGI 227


>gi|319440533|ref|ZP_07989689.1| putative transcription regulator [Corynebacterium variabile DSM
           44702]
          Length = 146

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 16/144 (11%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + I    G    Y +   D+A +   +  +     +        +    A       +  
Sbjct: 2   DVIALIRGGARGYVTKNIDIAELAEAVRRMGEGDAVFSPRLAGYVLDAFAAGGASAGTGT 61

Query: 178 VHWGKDFE----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
              G                    LT REVE +  ++ G T  E+A  L IS  TV  ++
Sbjct: 62  PGHGAGTTSGDNHDEDAGSPLIDDLTPREVEVMRLLARGYTYREMAKRLFISVKTVETHV 121

Query: 222 ASIMRKTATKTRSGAIAYAVRNNI 245
           + ++RKT    R     +   N +
Sbjct: 122 SHVLRKTQQTNRHQLSRWVSDNRL 145


>gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
 gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli
           TA271]
          Length = 148

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           ++I             T   A++   +  +                          +   
Sbjct: 30  DSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDS------------VHMDCEKIS 77

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +  D +LT RE E L  I++GKT+ EIA  L +SR  V  +  +IM+K    +    I
Sbjct: 78  SRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSGIELI 137

Query: 238 AYAVRNN 244
             A+R  
Sbjct: 138 KTALRMG 144


>gi|312959247|ref|ZP_07773765.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311286507|gb|EFQ65070.1| two component transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 210

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 66/224 (29%), Gaps = 14/224 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     L R  +     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVVAETDNGVDALQLAREHMPDIVILDIGIPQLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  ++ +   +             P   +    +         Y     D+  +  
Sbjct: 61  GLEVICRLSST--KQPAPFKVLVLTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLS 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L  +                       L+GRE+  L  ++ GKT
Sbjct: 115 AIKAVLSGYSYFPNQALNSVRSTMGNA--------SEADMVERLSGREMMVLQQLARGKT 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K   ++    I  A RN +V
Sbjct: 167 NKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGLV 210


>gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 205

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 29/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + LA ++ L+  +    ++       G       R        +D  + 
Sbjct: 8   VLLAEDQSMVREALAALLGLEDDIEVVAQVAR-----GDEVLAAARAHDIDVALMDIEMP 62

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +     A ++  K    ++         F       +      + +       A+
Sbjct: 63  GATGIE-----AAAQLHKELPAVKLV---ILTTFGRPGYLRSAMESGADAFLVKDAPAAQ 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R+I                               LT RE E L   ++
Sbjct: 115 LAEAVRKVLAGERVIDPTLAAA----------------ALAEGANPLTDREREVLRAAAD 158

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A     +
Sbjct: 159 GSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL 205


>gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 506

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 84/240 (35%), Gaps = 17/240 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +  L    D+LA    +      T  +  +    G     L  ++   +       
Sbjct: 271 RAELLEVLLEFDDVLASAGDM--NELLTCVVEHVCRRGGFKRSALFLYNPITQTVEGVHG 328

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-----PAGMDNRYCSL 133
            +    +++R             L +  ++  PVF     NI P        + +     
Sbjct: 329 YNVNVEEIMRIRQTDR---DIPSLTQFVQIAKPVFLKDVGNILPQPYVNKFHLSSLLVCP 385

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAY----QANMFKSYDVHW-GKDFEL 186
             D  R+   ++L          +    +   +LA         M++            L
Sbjct: 386 VIDQRRLLGIMLLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTL 445

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I++G  + EI   L IS  TV  +++SI+RK   K R+ A+A A+R  I+
Sbjct: 446 TKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505


>gi|298251534|ref|ZP_06975337.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297546126|gb|EFH79994.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 61/229 (26%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++  +  +     +       G +              LD  
Sbjct: 2   IRVLLAEDQAMVRGALAALLSRETDIEVVAEVAR-----GDTVVEAALTSRPDVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +           L     +    F                +       
Sbjct: 57  MPGGGGLEASHALRT--------ALPSCRAVILTTFGRSGYLRRAMESGAVGFLLKDAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + +   L  +    R++      E+ LLA                +  LT RE E L   
Sbjct: 109 SELASALRRVMHGERVVDP----ELALLAL------------SEGNNPLTHREREVLVAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G +  EIA  L +S  TV N++++ M+K     R  A   A +   +
Sbjct: 153 LPGLSHAEIATRLALSEGTVRNHLSAAMQKLGAHNRMEAARLAEQKGWL 201


>gi|197335823|ref|YP_002157200.1| regulatory protein CsgD [Vibrio fischeri MJ11]
 gi|197317313|gb|ACH66760.1| regulatory protein CsgD [Vibrio fischeri MJ11]
          Length = 214

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               + R  + E+           +           LT RE E L  ++ G ++ +IA  
Sbjct: 120 GEMWLSRKIINEL------IFAYREKQSAILSTSISLTTRESEILRLLASGASNVDIANS 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 174 LFVSENTVKTHLYNVFKKLNVKNRLQAMMWA 204


>gi|26247546|ref|NP_753586.1| transcriptional regulator NarL [Escherichia coli CFT073]
 gi|91210444|ref|YP_540430.1| transcriptional regulator NarL [Escherichia coli UTI89]
 gi|26107948|gb|AAN80148.1|AE016760_7 Nitrate/nitrite response regulator protein narL [Escherichia coli
           CFT073]
 gi|91072018|gb|ABE06899.1| NarL transcriptional dual regulator [Escherichia coli UTI89]
          Length = 238

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 26  QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 70

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 71  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 122

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 123 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 175

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 176 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 235

Query: 244 NI 245
            I
Sbjct: 236 RI 237


>gi|330967898|gb|EGH68158.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 215

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L       AR++  +       R+    ++             
Sbjct: 5   ILIADDHPLFRSALRQALAIGLGPEARLVEAESIAQLESRLGEKADW------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 52  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASIVVRSREFGAS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +                       ++             LT 
Sbjct: 103 GFIPKSSSLEVIQQAVRTVLDGDVWWPSQV--------NEFVSVSDEAKAASAGLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 155 QQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 205


>gi|319953725|ref|YP_004164992.1| two component transcriptional regulator, luxr family [Cellulophaga
           algicola DSM 14237]
 gi|319422385|gb|ADV49494.1| two component transcriptional regulator, LuxR family [Cellulophaga
           algicola DSM 14237]
          Length = 209

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++        + +  +   +     +  +  T     ++  ++              
Sbjct: 2   IKVLIADNHPVVRAGIKFVLDTASDFEVIADVATTTELFEKLETIS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      ++     L      Y  ++                ++      
Sbjct: 48  ------PDVVMLEMDIPEINGIATLRRIKAEYPDIKVLIYSGQS---EDVYALSTIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
             Y S   D+  I   +  +      I  +    +          F        + F  L
Sbjct: 99  YGYLSKAADLDYIISAVRKVSKGDMFITNELAQRLA---------FDEGTKKPRRFFRKL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AYAVRN 243
           + REVE L  ++ GK + ++A+ L ++  TV+ Y A +MRK         +  A A+  
Sbjct: 150 STREVEVLKMLASGKRNKDVAIGLNLNEKTVSTYKARLMRKLNVDNLVDLLQQAKALEL 208


>gi|304415493|ref|ZP_07396132.1| putative two-component response regulator [Candidatus Regiella
           insecticola LSR1]
 gi|304282652|gb|EFL91176.1| putative two-component response regulator [Candidatus Regiella
           insecticola LSR1]
          Length = 189

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 18/188 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     + +        LD  +      D        +  + +  L+             
Sbjct: 17  GLDVRCMCQKTEPDMVILDLGLPGMDGQD-----VSVDLLRRWPRLRIL---ALTARQEE 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y         +   +  +    R I                +     
Sbjct: 69  YYVSQILNIGALGYVLKKSPQEVLLAAIQTIMAGKRYIDPALD----------HDQVLQL 118

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + L  I+EG  +  IA  L IS+ TV  +  ++MRK      +  
Sbjct: 119 MKTCHNPSSLTPRERQVLKLITEGACNRVIAEKLTISKKTVETHRLNMMRKLDVHKVADL 178

Query: 237 IAYAVRNN 244
           I ++ R  
Sbjct: 179 IDWSHRLG 186


>gi|76797806|ref|ZP_00780071.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|76586820|gb|EAO63313.1| response regulator [Streptococcus agalactiae 18RS21]
          Length = 186

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 34/193 (17%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFD---LVRCMALSEKDKYYNVLQRPTELFCPVF 113
           G     ++         LD  +      D    VR                   +    F
Sbjct: 25  GGEAIAILSNKAIDVAILDVEMPILSGLDVLEWVRKYQN------------VKVIIVTTF 72

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                         + Y      VA +   +  +   G+    + +  +           
Sbjct: 73  KRSGYFQRAIRSNVDAYVLKDRSVADLMKTIQKVLSGGKEYSPELMENVI---------- 122

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                       L+ +E++ L+ I++GKTS EIA  L +S  TV NY ++I  K     R
Sbjct: 123 ---------SNPLSEQEIKILSLIAQGKTSKEIACTLFLSNGTVRNYTSNIFDKLGVNNR 173

Query: 234 SGAIAYAVRNNIV 246
             A+  A   + +
Sbjct: 174 LEALKIAREKDWL 186


>gi|302529868|ref|ZP_07282210.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302438763|gb|EFL10579.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 221

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 60/236 (25%), Gaps = 26/236 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V +VL  +D+     +  +      L          +    +  L            
Sbjct: 1   MDRVRVVLVDDDQLVRMSLRLMLDGEADLEVAGEAADGDAAIAEVRRL------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +           +              P  L    F +    +    
Sbjct: 49  ---RPDVVLMDVRMPGRDGISATEAI----LSWPDP----PRILVLTTFDSDEMVLGALR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWG 181
                +         I   +  +      +       +   A    +      + +    
Sbjct: 98  AGALGFVLKDTPPPDILAAVRAVADGNPALSPAATSRLITAAMGPRSSETRRAAREAARA 157

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +   LT RE +    I+EG ++ E+A  L IS  TV  + +++  K     R    
Sbjct: 158 RLAALTERERDTARAIAEGLSNAEVAERLHISVATVKAHTSNLFAKLGVVNRVQIA 213


>gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 74

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|229490111|ref|ZP_04383959.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
 gi|229322987|gb|EEN88760.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis
           SK121]
          Length = 243

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  + E     ++ L  +      +    C    +  +                  
Sbjct: 3   IGIYLVDDHEIVRRGLADLLNQVSEFDVVGEASCVREASAGI---------------PEC 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L R +A +              L    +      +       
Sbjct: 48  RPDVVVMDVRLPDGNGVELCRELAST--------YPSAATLMLTSYSDDDALLDALIAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +     ++    +  +           +S          LT
Sbjct: 100 RGFVLKNIRGHDLVSAIRTVATGKSLLNTQAVIGL-------VRRIRSEQESGTAAALLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +E+     I +G ++ EI+    +S  TV NY++ I+ K   + R+ A   A + 
Sbjct: 153 DQELLIFELIGKGLSNREISSHAELSEKTVKNYVSRILEKLGLERRTQAAVLATKL 208


>gi|153207364|ref|ZP_01946101.1| transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|154707552|ref|YP_001424123.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|165918493|ref|ZP_02218579.1| transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212219060|ref|YP_002305847.1| response regulator [Coxiella burnetii CbuK_Q154]
 gi|120576673|gb|EAX33297.1| transcriptional regulator [Coxiella burnetii 'MSU Goat Q177']
 gi|154356838|gb|ABS78300.1| response regulator [Coxiella burnetii Dugway 5J108-111]
 gi|165917861|gb|EDR36465.1| transcriptional regulator [Coxiella burnetii RSA 334]
 gi|212013322|gb|ACJ20702.1| response regulator [Coxiella burnetii CbuK_Q154]
          Length = 211

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 37/242 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +++     +  L   +  +  +   +                           
Sbjct: 2   ISVLIVDDEQLVREALKLLLKDASGVKVIGEAETGEMALASARE---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPA 124
               ++ + I+      D        +  + Y    V+   +E        L E      
Sbjct: 46  ----KRPNVILLDVHLPDFSGLYISQKLLRQYPETKVIILTSEKNKTFSRRLLEV----- 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y +   +   +   +  +    RII      ++ +         K      G   
Sbjct: 97  -GVHGYLTKEAEQEELIQAIKEVQKGKRIISPKIASQLAI--------SKMTSQVSGVLD 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ RE+E L  +  G  ++ IA  L +S  TV+ Y  +I +K   K  +  I   +R  
Sbjct: 148 SISDREMEILLMMVRGVPTETIAQKLHLSPKTVSTYRVAIFKKLNVKNDAELILLGMRQG 207

Query: 245 IV 246
           ++
Sbjct: 208 LL 209


>gi|327480133|gb|AEA83443.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 216

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 69/236 (29%), Gaps = 31/236 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L        R++           +       GA          
Sbjct: 6   IIIADDHPLFRSALQQALTMGLGENVRLVEAASIAELEGFLNQ-----GADW-------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +          V+    +    V               +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQYPHM--PVVMISAQEDAAVVAR------SREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +         +   E        AN+ +           LT 
Sbjct: 104 GFIPKSSSLETIQEAVRAVLEGDVWWPSNIQDE--------ANVSEEAKAASAGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++   LT + +G  + +IA  L +S  T+  ++ +I RK   +TR+ A     +  
Sbjct: 156 QQFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQMG 211


>gi|325914503|ref|ZP_08176847.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539273|gb|EGD10925.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 200

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +A +       S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 47  QPDVLVTDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AGYLLKDAPAEQLVDALRQVQRGGRVIDPQLAIDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 142 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|256421396|ref|YP_003122049.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256036304|gb|ACU59848.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 234

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +  +     ++ +          +      +           I       + Y  
Sbjct: 53  LLDISLPGESGIQGMQELKR--------IYPDAKLIVLSGHDGKHYVIESIRQGASGYII 104

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            T  +  I   +M    +G  +         LL  Y A      D       +LT RE E
Sbjct: 105 KTSRLMEIYHSIMDAVSEGGTLSPKAA---HLLINYIA-----KDPLEDIKHKLTKREYE 156

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L  + EG +  E+A  L ++  TVN ++  I +K    T+S  I+ 
Sbjct: 157 LLALLKEGYSYKEMAEKLFVTVFTVNQHLKKIYQKLNVATKSELISK 203


>gi|332669983|ref|YP_004452991.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339021|gb|AEE45604.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 215

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 18/227 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P     +A ++     +  T +  +       +  L           +D  +
Sbjct: 4   RVVLVDDHPVFRIGMAALLESLPGLRVTGQAASAA----EARALFAGAVEADVVLMDLDL 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 DL R +  +              L   +       +         Y   +    
Sbjct: 60  GDGSGVDLTRELLAAR--------PGLAVLVVTMHEDDDAVVASVRAGARGYLVKSAPPD 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     I+               A +            +LT RE E L  ++
Sbjct: 112 AVERAVRAVAAGEMILSPAVAQRA------MAYVLGGRTATRVPFPQLTDREREVLDLVA 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G+ +  I+  L +S  TV N++A+++ K +   RS AI  A    +
Sbjct: 166 AGRDNAVISRRLSLSPKTVRNHVANVLTKLSLPDRSAAILRAREEGL 212


>gi|261410000|ref|YP_003246241.1| LuxR family two component transcriptional regulator [Paenibacillus
           sp. Y412MC10]
 gi|261286463|gb|ACX68434.1| two component transcriptional regulator, LuxR family [Paenibacillus
           sp. Y412MC10]
          Length = 201

 Score = 95.7 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +      + L    D +  +  +                 G   +  +R  
Sbjct: 2   IRIVIAEDQQMLRGAFASLLNFEDDIEVVAEVPD---------------GQLAWDAIRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L   +  +              +    F              
Sbjct: 47  QPDVCLLDIEMPHINGLELAESIRQAGLS--------CKIVIVTTFARPGYLQKAMEAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +    R++  D    + +                 ++  L+
Sbjct: 99  EGYLLKDEPIDFLIEAIRRVMKGERVVSTDLAAALFM----------------KEENPLS 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L    EG T+ +I+  L ++R TV NY++S ++K    +R  A+  A     +
Sbjct: 143 EREIEMLRLTKEGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIAEDKGWL 201


>gi|319785539|ref|YP_004145015.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171427|gb|ADV14965.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 219

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 21/216 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +    +             ++  L+V  +      LD  +     
Sbjct: 12  DHPLFRGALREALAGIGNVAAIHE-----AGDFESAKALVVANEDVDLVLLDLSMPGASG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +           +  +                         + + S +  +  IR  
Sbjct: 67  LSGL-----ISLRGIHPAVPLVVVS---AHDDPATIRRALDLGASGFISKSASMEEIRSA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                                  +   LT ++   L  ++EG  +
Sbjct: 119 VQSVLAGDIAAPVGV--------DLGTERDPEISDLIKRLQALTPQQTRVLGMLAEGLLN 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  LG+S  T+  ++++I++K    +R+ A+  
Sbjct: 171 KQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIL 206


>gi|188496895|dbj|BAG32345.1| putative response regulator [Streptomyces kasugaensis]
          Length = 217

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 58/228 (25%), Gaps = 14/228 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     +  ++     +             G     L R        LD  
Sbjct: 2   IRVLVTDDEPLIRAGIRMILSSADDIDVVAEA-----ANGREAVELARSRHVDVVLLDIQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +  +  +        +     L    F      +    G    +       
Sbjct: 57  MPVMDGLTALTELHRT--------VPDTRVLILTTFGEQQNVLRALTGGSAGFLLKDSAP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +         +       +   +          +    +   LT RE+E L  +
Sbjct: 109 AELMRAVRAAAAGDAYLSPGATRHVVD-SLASGRSAHRAEQARRRLETLTDRELEVLALL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ +    + +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 168 GEGLSNADAGQRIHMSEATVKTYVSRILAKLECENRVQAALLARDAGL 215


>gi|295676073|ref|YP_003604597.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
 gi|295435916|gb|ADG15086.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002]
          Length = 293

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 35/237 (14%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           + +R   +  L  + D LAR    D                                + D
Sbjct: 9   NAERRDGLKALLRQIDRLARFTEADEWRLLERPFKRY--------------------RPD 48

Query: 76  SIVSS--DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
            +V    +W    V  +           +   T+   P       +              
Sbjct: 49  LVVIDWENWMS--VAQVRALLSHFPDLRISVLTDGTLPALVRALMDE-----GVLGVVPR 101

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGR 189
             D   I   L ++   G  +    L     L    A    +              L+ R
Sbjct: 102 DTDPCLIVRALEMVLLGGHYVPPGALAIDPPLPTDTAIRTFDEESPPPRRNKLSSGLSPR 161

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + + +  +  G T+  IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 162 QEQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|87309032|ref|ZP_01091170.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
 gi|87288375|gb|EAQ80271.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
          Length = 229

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 28/233 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++          +++        +              +   T               
Sbjct: 8   KILIVDGQPLFRDGMAYHLRDQSGFSVCGEASGVNQALELLEKQT--------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +L+R +        Y  +Q         +              +
Sbjct: 53  PDIALIDICLDDGNGLELIRNIKS-----RYPHIQMMVVSG---YDDDLYAERALRSGAS 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +    +  +  GL  +      +       +  + A                  LT 
Sbjct: 105 GYVNKREPIGVLLEGLRSVSDGKIYVSAKVTERMLRITAQGGAQ-----NLSSTLGALTD 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE+E    I  G  S EIA  L +S NT++ Y   I +K    + +  + +AV
Sbjct: 160 RELEIFELIGLGMASREIAERLHLSGNTIDTYRERIKKKLGFHSGAELLRHAV 212


>gi|325524307|gb|EGD02416.1| signal transduction response regulator [Burkholderia sp. TJI49]
          Length = 173

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 62/179 (34%), Gaps = 16/179 (8%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      ++++ +           L R   L   ++      +       
Sbjct: 3   AFDVILLDISLPDTNGIEVLKRLKRK--------LPRTPVLMFSMYREDQYAVRALKAGA 54

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T + A++   +  +    + +       +          + S++       +L+
Sbjct: 55  AGYLSKTVNAAQMIGAIQQVAAGRKYVSPAMAEALA--------EYVSFENEPLPHEKLS 106

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ GK   +IA  L +S  TV+ Y + ++ K      +    Y + N +V
Sbjct: 107 DREYQTLCMLASGKRLTDIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTFYVMSNRLV 165


>gi|311900673|dbj|BAJ33081.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 194

 Score = 95.7 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + +      +  I   + ++     ++       +  +  + A    +      
Sbjct: 67  ALRAGASGFLVKDMALDDITTAVRVVADGDALLAPKVTRRL--IEEFTARPRPAAARPPQ 124

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               +T RE E LT I  G ++ EIA  L I+  TV  Y+  ++ K   + R   +  A 
Sbjct: 125 DLRGITDREREVLTLIGRGLSNAEIAEALFITAATVKAYVTRLLAKLDARDRVHLVITAY 184

Query: 242 RNNIV 246
            + +V
Sbjct: 185 EHGLV 189


>gi|326388485|ref|ZP_08210080.1| response regulator receiver domain protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207033|gb|EGD57855.1| response regulator receiver domain protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 209

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 40/231 (17%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +DE     +  L     +  R+        +   + AL E         V    
Sbjct: 12  TVIVIDDDEMMRDSIDGLLRSVGIATRV--------FPSAVAALAE---------VWPTG 54

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +L   +  +         +    +F      +P  +        
Sbjct: 55  PSCMVVDIRMPHLGGLELQERLNETG--------KTVPVIFITGHGDIPMTVKAMKAGAV 106

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +  F    +   + +   +               A               K   LT 
Sbjct: 107 DFLTKPFREQDLLEAVHIALDR---------------ARRLHAQQHDLQRTRDKLSLLTP 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE E ++ ++ G  + +IA  LG+S  TV  + +S+M+K   +  +  +  
Sbjct: 152 REKEVMSGVARGLLNKQIAGELGLSEITVKLHRSSLMKKLGIRGVAELVRM 202


>gi|299536834|ref|ZP_07050141.1| two component transcriptional regulator, LuxR family protein
           [Lysinibacillus fusiformis ZC1]
 gi|298727658|gb|EFI68226.1| two component transcriptional regulator, LuxR family protein
           [Lysinibacillus fusiformis ZC1]
          Length = 201

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 75/239 (31%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     ++ L      +  +  +                 G   + L++ +
Sbjct: 2   IRVLLAEDQQMLRGALTSLLAFEPDIEVIAEVAD---------------GQQAWELIQQE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L   +  +              +    F              
Sbjct: 47  PPDICLVDIEMPHLSGLELAEKIKQANLP--------CKVMIVTTFARPGYLQKAMDCEV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +    +++ +D    + +                 +   L 
Sbjct: 99  HGYLLKDEPIDYLIATIRKIMQGEKVVSKDLAASLFM----------------KEQNPLN 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  + +G T++EI+  L +++ T+ NY+++ ++K   ++R  A   A     +
Sbjct: 143 EREIAVLQLVKKGLTTNEISKQLFLTKGTIRNYLSTSIQKLQVESRQQAAQVAGEKGWL 201


>gi|119718601|ref|YP_925566.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119539262|gb|ABL83879.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 1006

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 11/219 (5%)

Query: 33   LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
            +A+ +P          +  +       H +L R+                    ++ +  
Sbjct: 793  VAQAMPALSAAERASYVGRVDRIHADGHVVLQRYSDPSGHW------GPEGRAWMKRLDA 846

Query: 93   SEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                  +   +  P              +    G       +   +A I      L    
Sbjct: 847  ETLRVRWLAGIDAPPLDALVDTWRDAAVLFEDFGHAYELARVRTALAGILRATGDLAGGR 906

Query: 152  RIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTWISEGKTSDEIA 207
             +    R     L A    +  +S      +       LT RE E L  +++G+++ EIA
Sbjct: 907  ELGDLARASAHQLGARPLLDELRSIGSAPARTESVPDALTPRESEVLQLVAQGRSNGEIA 966

Query: 208  VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L IS  TV+ ++++I+ K     R+ A A A R  ++
Sbjct: 967  KQLFISAKTVSVHVSNILGKLDASGRTEAAAIARRRGLI 1005


>gi|119715592|ref|YP_922557.1| regulatory protein, LuxR [Nocardioides sp. JS614]
 gi|119536253|gb|ABL80870.1| regulatory protein, LuxR [Nocardioides sp. JS614]
          Length = 217

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 17/195 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV-----LQRPTELFCP 111
           G +  L    D     +LDS +      D++       + +   V     L         
Sbjct: 20  GVAAMLAPHHDRVAVVELDSGLPVISDVDVI-LYDTFGQVQGDAVDLEDLLAGDAVPVAI 78

Query: 112 VFHTLP--ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
               L               Y S   +   I   +  +     +                
Sbjct: 79  FSWNLQPDLVQRALERGAAGYLSKALNAGEIVAAIEAIHRGETVAPPPSAETADREVT-- 136

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                      G+D  LT RE E L  I++G ++ EIA    +S N+V  YI +  RK  
Sbjct: 137 -------GEWPGRDVGLTAREAEVLALITQGLSNQEIAEHTYLSINSVKTYIRTAYRKIE 189

Query: 230 TKTRSGAIAYAVRNN 244
              R+ A+A+ + + 
Sbjct: 190 VTRRAQAVAWGMTHG 204


>gi|319791283|ref|YP_004152923.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315593746|gb|ADU34812.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 230

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 60/227 (26%), Gaps = 20/227 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  +   +S           +     L    D      +D  +       
Sbjct: 3   ILIADDHRLVIEAVKAKLSELEPGIEFVLAMSVDELLAGANDDLDLAVIDLNMPGADGQA 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +                 +    +       +        +    +    +   + 
Sbjct: 63  HIDEIRRRH--------PAVPVIVLSGYEDPAIMRSALERGVLGFIPKAYSPEVMLSAVR 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK------------DFELTGREVEC 193
           L+   G  +    L  +                   +               LT R+VE 
Sbjct: 115 LVLAGGVYVPPMMLTALPPGIVAGVAPQGGGGEVLTRGGGGAGQTLEHLRSVLTERQVEV 174

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  +S+GK +  I   LGIS  TV  ++A+I R    + R+ A+  A
Sbjct: 175 LQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 221


>gi|62199613|gb|AAX76904.1| EsrB [Edwardsiella tarda]
          Length = 214

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 34/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   I  +NI++  +       + +L         +  +   ++       L+       
Sbjct: 1   MTISILPLNILIVEDHALLADGIRNLLDSQPRYRVVGAVSNGLAVYEACQRLS------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      D++R +     D    V+                  
Sbjct: 54  --------PDLVLLDLGLPGMDGVDVIRQLRRRWSDMRIVVV--------TASSEARRGS 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A     Y         +   +         +           A    ++  S D+  
Sbjct: 98  EAVAAGALAYVLKQSPQQTLLAAMQHASLGKTFVDP---------APRLDSLVASSDMAQ 148

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  ++EGK + +IA +L IS  TV  +  ++MRK      +    +A
Sbjct: 149 EP--PLTLRERQILKLVAEGKRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWA 206

Query: 241 VRNNIV 246
            R  ++
Sbjct: 207 RRLGVL 212


>gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain
          Length = 91

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  I++G ++ EIA    I+  TV  ++++I+ K   + R+ A+ YA ++N+
Sbjct: 30  LTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 89

Query: 246 V 246
           +
Sbjct: 90  I 90


>gi|134094678|ref|YP_001099753.1| putative two-component response regulator protein [Herminiimonas
           arsenicoxydans]
 gi|133738581|emb|CAL61626.1| Two-component response regulator, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 315

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 20/195 (10%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
             +  L  ++G +       D      L  ++ +                      ++  
Sbjct: 123 EVLARLHTHLGNARVARFALDAIDMSGLGVVMLNQQGA----------ISWCSPCARQLL 172

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             F      L    +      N        + A   + +  +   G       + EI LL
Sbjct: 173 MQFGIKQDALALPQSWWDDGSNMVLVASIAEPAGDSLLVRNMGSAG-------MDEIMLL 225

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               +N              LT RE E L+W+++GKT+ +I  IL +S  TV+ ++  I 
Sbjct: 226 LELSSNRMLPTGRLA--SAALTPRETEVLSWLAKGKTNRDIGDILQLSPRTVSKHLEHIF 283

Query: 226 RKTATKTRSGAIAYA 240
            K   +TRS A+A A
Sbjct: 284 EKLGVETRSAAVAMA 298


>gi|26989391|ref|NP_744816.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24984253|gb|AAN68280.1|AE016462_6 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 212

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIVL  +        + L      L ++          +R+                  
Sbjct: 1   MNIVLVDDHAVVRQGYASLLRAVLPLVQVREAASGEEALVRVQEQV-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L +   LF  +   LP          
Sbjct: 47  -PNLVIMDFGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      I +    ++                   +   +T
Sbjct: 98  SGYLTKNSAPEVLIEAVQRVLAGHAYIEQPLATQLA--------CLSQQSTSDPRLQRMT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E  T +++G  +  IA  L IS  TV+N++  +  K    + +  +   +   +V
Sbjct: 150 QRELEIFTMLAKGTPARVIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVHLGIDLGVV 208


>gi|17987890|ref|NP_540524.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23501222|ref|NP_697349.1| LuxR family DNA-binding response regulator [Brucella suis 1330]
 gi|62289309|ref|YP_221102.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|82699239|ref|YP_413813.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|161618298|ref|YP_001592185.1| two component LuxR family transcriptional regulator [Brucella canis
           ATCC 23365]
 gi|163842602|ref|YP_001627006.1| two component LuxR family transcriptional regulator [Brucella suis
           ATCC 23445]
 gi|189023562|ref|YP_001934330.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225626842|ref|ZP_03784881.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225851861|ref|YP_002732094.1| LuxR family two component transcriptional regulator [Brucella
           melitensis ATCC 23457]
 gi|237814800|ref|ZP_04593798.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|254688629|ref|ZP_05151883.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 6 str. 870]
 gi|254696752|ref|ZP_05158580.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701135|ref|ZP_05162963.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 5 str. 513]
 gi|254707944|ref|ZP_05169772.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M163/99/10]
 gi|254709478|ref|ZP_05171289.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis B2/94]
 gi|254718509|ref|ZP_05180320.1| two component transcriptional regulator, LuxR family protein
           [Brucella sp. 83/13]
 gi|254729661|ref|ZP_05188239.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 4 str. 292]
 gi|256030972|ref|ZP_05444586.1| two component transcriptional regulator, LuxR family protein
           [Brucella pinnipedialis M292/94/1]
 gi|256044043|ref|ZP_05446954.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256060463|ref|ZP_05450634.1| two component transcriptional regulator, LuxR family protein
           [Brucella neotomae 5K33]
 gi|256112839|ref|ZP_05453760.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|256159018|ref|ZP_05456855.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti M490/95/1]
 gi|256254376|ref|ZP_05459912.1| two component transcriptional regulator, LuxR family protein
           [Brucella ceti B1/94]
 gi|256256876|ref|ZP_05462412.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 9 str. C68]
 gi|256264624|ref|ZP_05467156.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|256368775|ref|YP_003106281.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260168107|ref|ZP_05754918.1| DNA-binding response regulator, LuxR family protein [Brucella sp.
           F5/99]
 gi|260545936|ref|ZP_05821677.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563402|ref|ZP_05833888.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260567065|ref|ZP_05837535.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754100|ref|ZP_05866448.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757320|ref|ZP_05869668.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761144|ref|ZP_05873487.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883126|ref|ZP_05894740.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261221537|ref|ZP_05935818.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315435|ref|ZP_05954632.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317000|ref|ZP_05956197.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261324454|ref|ZP_05963651.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751668|ref|ZP_05995377.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757557|ref|ZP_06001266.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|265983478|ref|ZP_06096213.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988037|ref|ZP_06100594.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265990454|ref|ZP_06103011.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994282|ref|ZP_06106839.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265997500|ref|ZP_06110057.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851704|ref|ZP_06792377.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297247726|ref|ZP_06931444.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838316|ref|ZP_07471162.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|306842417|ref|ZP_07475069.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306844955|ref|ZP_07477536.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|17983624|gb|AAL52788.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M]
 gi|23347103|gb|AAN29264.1| DNA-binding response regulator, LuxR family [Brucella suis 1330]
 gi|62195441|gb|AAX73741.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1
           str. 9-941]
 gi|82615340|emb|CAJ10301.1| Bacterial regulatory protein, LuxR family:Response regulator
           receiver [Brucella melitensis biovar Abortus 2308]
 gi|161335109|gb|ABX61414.1| two component transcriptional regulator, LuxR family [Brucella
           canis ATCC 23365]
 gi|163673325|gb|ABY37436.1| two component transcriptional regulator, LuxR family [Brucella suis
           ATCC 23445]
 gi|189019134|gb|ACD71856.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225618499|gb|EEH15542.1| glycerol metabolism activator [Brucella ceti str. Cudo]
 gi|225640226|gb|ACO00140.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis ATCC 23457]
 gi|237789637|gb|EEP63847.1| glycerol metabolism activator [Brucella abortus str. 2308 A]
 gi|255998933|gb|ACU47332.1| DNA-binding response regulator, LuxR family [Brucella microti CCM
           4915]
 gi|260097343|gb|EEW81218.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153418|gb|EEW88510.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156583|gb|EEW91663.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667638|gb|EEX54578.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671576|gb|EEX58397.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674208|gb|EEX61029.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872654|gb|EEX79723.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260920121|gb|EEX86774.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261296223|gb|EEX99719.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300434|gb|EEY03931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304461|gb|EEY07958.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737541|gb|EEY25537.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|261741421|gb|EEY29347.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262551968|gb|EEZ07958.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|262765395|gb|EEZ11184.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001238|gb|EEZ13813.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094991|gb|EEZ18699.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|264660234|gb|EEZ30495.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662070|gb|EEZ32331.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820293|gb|EFG37292.1| two component LuxR family transcriptional regulator [Brucella sp.
           NVSL 07-0026]
 gi|297174895|gb|EFH34242.1| two component LuxR family transcriptional regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274587|gb|EFM56376.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO1]
 gi|306287439|gb|EFM58916.1| two component LuxR family transcriptional regulator [Brucella sp.
           BO2]
 gi|306406607|gb|EFM62840.1| two component LuxR family transcriptional regulator [Brucella sp.
           NF 2653]
 gi|326408357|gb|ADZ65422.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326538072|gb|ADZ86287.1| two component transcriptional regulator, LuxR family protein
           [Brucella melitensis M5-90]
          Length = 213

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 14/220 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H     D       L   +S       + E         +  +      L   ++     
Sbjct: 2   HFIIADDHPLFRGALRQVLSGQSENVEIIEAGDFDTVRKLVGEKDDTDLLLLDLTMPGGT 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L   +AL        ++           H   E         + + S +  +  I   +
Sbjct: 62  GLSGLVALKALQPALPIIIVSATDDPATIHHALEL------GASGFISKSASMETIGEAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         D   +               +    +   LT ++   LT ++EG  + 
Sbjct: 116 GAVLAGDIWTPDDIDLD--------HPKDPEIESLIARLRTLTPQQTRVLTMLAEGLLNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 168 QIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|282881294|ref|ZP_06289978.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
 gi|281304839|gb|EFA96915.1| transcriptional regulator, LuxR family [Prevotella timonensis CRIS
           5C-B1]
          Length = 221

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210
           +   + +  + +L  +     +         K   L+ RE+E L+ I +G  + EIA  L
Sbjct: 121 VPEDELVRSVLMLEQHAHGTGQHLPPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRL 180

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 181 NIGMTTVITHRKNIMEKLGVKSVSALTIYAVTHGYV 216


>gi|206562092|ref|YP_002232855.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038132|emb|CAR54080.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 230

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 68/240 (28%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IV+  +         +  + ++ +A +     +      +                 
Sbjct: 6   PIRIVIADDHPAVVIGARYELSATNTVAVVATAHNSTELMDAL---------------SH 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +      D +    +  K            +   +              
Sbjct: 51  HPCDVLVSDYAMPGTEYGDGLAMFTILLK-----RFPGLKIVVMTMMENAVALRALMDIG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                S +     + + +   +  GR +       +           ++     GK   L
Sbjct: 106 IACIVSKSDMPNHLTMAIHAAYTNGRYLSPSMDRIL-----------RNTGSVGGKAPAL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + REVE +   + G + +EIA  L  S+ T++   +S M+K   +     + YA+   +V
Sbjct: 155 SVREVEVIRLFASGLSVNEIAEKLNRSKKTISTQKSSAMQKLGIERDVDLVRYAIACGLV 214


>gi|158422196|ref|YP_001523488.1| regulatory protein [Azorhizobium caulinodans ORS 571]
 gi|158329085|dbj|BAF86570.1| regulatory protein [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 30/230 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V+  +       +          A ++ +                    H LL R D 
Sbjct: 9   RLVIADDHPLFRGALREAVAGEFPSAEIVEVGTFDDL--------------HALLEREDD 54

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F    LD  +     F  +     ++      V+         V     +         +
Sbjct: 55  FDLILLDLTMPGARGFSGL-IYLRAQYAGV-PVVVVSGNEEPAVIRRCIDL------GAS 106

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   T  +A +R  +  +   G  +  D                   D    +   LT 
Sbjct: 107 GFIPKTMGIAGMRQSVATVLAGGTSVPPDLGP--------PTAQDGEADAIISRLATLTP 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++V  L  ++EG+ + +IA  LG+S  TV  ++++I++K   ++R+ A+ 
Sbjct: 159 QQVRVLMMLAEGRLNKQIAYELGVSEATVKAHVSAILQKLGVESRTQAVI 208


>gi|325275199|ref|ZP_08141166.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51]
 gi|324099686|gb|EGB97565.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51]
          Length = 207

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 65/216 (30%), Gaps = 19/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D      + +  L E  G          +    L ++   D +V       L    
Sbjct: 4   VLIVDDHPVIRLAVRMLMERHGYDVVGETDNGVAALQLTRQHLPDIVVLDIGIPKLDGLE 63

Query: 91  ALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            ++    +    +        P   +    +         Y     ++  +   +  +  
Sbjct: 64  VIARMASFSPGSKVLVLTSQAPGNFS----MRCMQAGAAGYVCKQQELTELLSAIKAVLS 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                    L          A   +           L+ RE+  L  ++ G+++ EIA  
Sbjct: 120 GYSYFPNQALH---------AARGRGTGSEVDMVNRLSAREMTVLQQLARGRSNKEIADS 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV+ Y + ++ K   ++    I  A R  +
Sbjct: 171 MYLSNKTVSTYKSRLLLKLNARSLVDLIELAQRQGL 206


>gi|320095298|ref|ZP_08026990.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977771|gb|EFW09422.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 222

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 19/239 (7%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ L      +  +            +       G          
Sbjct: 3   IRVLVADDQAMIRGALASLLDLEPDIEVVAQASNGREAVEALAPAARGTGKGGAGEDGGG 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  V       +    A     + +   +         F              
Sbjct: 63  HDGSGAVDVAVLDIEMPIMDGITATETIRRRFPATRVLMVTT---FGRPGYLQRALDAGA 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +      V ++   +  +    R++      E                        LT
Sbjct: 120 TGFMVKDAPVDQLADAVRRVAKGLRVVDPTLAVE----------------TLSRGTSPLT 163

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +S G T  +IA  + +S+ TV N+++S M KT  +TR+ A+  A  +  +
Sbjct: 164 ERESDVLRAVSTGGTIADIAREMRLSQGTVRNHVSSAMLKTEARTRAEAVRIATESGWL 222


>gi|312961827|ref|ZP_07776325.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284086|gb|EFQ62669.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 208

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +        + L         +           R+                  
Sbjct: 1   MNILLVDDHAVVRQGYASLLRALLPAIEVREAASGEEALSRVQEAV-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L +   LF  +   LP          
Sbjct: 47  -PNLVIMDFGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y + +     +   +  +      I +    E+                   +   +T
Sbjct: 98  SGYLTKSSAPEVLIEAVRRILDGHAYIEQALATELAY------------TPSDQRLQGMT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    ++ G  +  IA  L IS  TV+N++  +  K    + +  +   +   +V
Sbjct: 146 PRELEIFLMLARGTPTRAIADRLNISSKTVSNHLTLLKSKLQVSSHAELVHLGIDMGVV 204


>gi|307296354|ref|ZP_07576181.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878156|gb|EFN09379.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 250

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y        R+   L L+    R++      E+    +  +           
Sbjct: 97  AFRLGALAYIVKEISCDRLVATLRLVAMGERVLPPQLADELQ---SRPSLTDALEVERPV 153

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L W+  G  +  I+  + IS  TV  ++ +++RK   K R+ A  +A 
Sbjct: 154 DAACLSDRELEILRWLIMGCPNKVISKRMNISEATVKVHVKAVLRKLRVKNRTQAAIWAA 213

Query: 242 RNNI 245
            + +
Sbjct: 214 NHGM 217


>gi|268591023|ref|ZP_06125244.1| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
 gi|291313829|gb|EFE54282.1| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
          Length = 218

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 31/243 (12%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N    Q  I+L  +     + V  L +    L  +   D                G +  
Sbjct: 5   NKLTGQSTILLIDDHPMLRNGVKQLISLEPTLKVIGEADD---------------GITGI 49

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            +          LD  + S   F+++  +   E             +   V +   + I 
Sbjct: 50  KIAEEQDPDLILLDLNMPSMNGFEVLDNLRNRELS--------GRIILFTVSNYGEDLIN 101

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y     +  ++ I L        ++          LA+  A   +       
Sbjct: 102 ALKRGADGYLLKDMEPEKLIIALKEAASGKMVVSP-------TLASILAESLRDNRAPTE 154

Query: 182 KD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE   L  IS+G ++  IA  L I+ +TV  ++  +++K   K+R  A  + 
Sbjct: 155 HNLSALTPRETHILDLISQGLSNKMIANKLQITESTVKVHVKHLLKKLNLKSRVEAAIWV 214

Query: 241 VRN 243
           ++ 
Sbjct: 215 LQQ 217


>gi|327472321|gb|EGF17752.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 199

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G      +  +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIHTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199


>gi|94970529|ref|YP_592577.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552579|gb|ABF42503.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 228

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P   D+L  ++      S            G     LVR        LD +
Sbjct: 13  ARILIADDDPIVRDILRNVLSARTEFSVVGEAKN-----GDESVRLVRELKPDLLLLDLL 67

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    D ++ M  ++             +      T  + +                +
Sbjct: 68  MPNLPGLDALKEMTTTDS--------LVRTIVLTASITKQQVLQALQLGARGVVRKDA-L 118

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +    +  +  L    A   ++       DF LT RE+E +  +
Sbjct: 119 NELVAAIRAVLDGQYWLDGKIVPNVVQLLNELAASSRTEAPRN--DFGLTPRELEIVALV 176

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +EG  + EIA  L IS  TV  ++  I  K    TR     +A+ +N+
Sbjct: 177 TEGCGNREIATRLTISEETVKRHLTHIFDKVGMSTRLELALFALDHNL 224


>gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 506

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 17/240 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +  L    D+LA    +      T  +  +    G     L  ++   +       
Sbjct: 271 RAELLEVLLEFDDVLASAGDM--NELLTCVVEHVCRRGGFKRSALFLYNPITQTVEGVHG 328

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-----TLPENITPPAGMDNRYCSL 133
            +    +++R             L +  ++  PVF       LP++      + +     
Sbjct: 329 YNVNVEEIMRIRQTDR---DIPSLTQFVQIAKPVFLKDVGNILPQSYVNKFHLSSLLVCP 385

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLAAY----QANMFKSYDVHW-GKDFEL 186
             D  R+   ++L          +    +   +LA         M++            L
Sbjct: 386 VIDNRRMLGIMLLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAGAAPITPLTTL 445

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L  I++G  + EI   L IS  TV  +++SI+RK   K R+ A+A A+R  I+
Sbjct: 446 TKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMRERII 505


>gi|209518905|ref|ZP_03267716.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
 gi|209500628|gb|EEA00673.1| transcriptional regulator, LuxR family [Burkholderia sp. H160]
          Length = 333

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 58/238 (24%), Gaps = 29/238 (12%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L++ +            +      +G   F           K   +++S      +    
Sbjct: 91  LISPLGRFGSAQDRMEFVRQRIRQLGFDSFSYAATRTSSHHKTIFVLTSYESPAWLTRYF 150

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENIT------------------PPAGMDNRYCSL 133
                +    +   +    P      +                       A         
Sbjct: 151 RERYFELDPRVGLASPTGMPFMWNTADMRADLPRAQLRSERLGELIDMLEAAGRKSGILT 210

Query: 134 TFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFKS-------YDVHWGK 182
              +    +   L F         +    + E  + A        +        +    +
Sbjct: 211 RMPLPEPDLSASLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGIEPEQQQ 270

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
              L+  +   L  + EG+   EIA  LG+S + V+ ++  + +    + R   I  A
Sbjct: 271 RVALSKLQYAVLKAVVEGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLINVA 328


>gi|291450698|ref|ZP_06590088.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291353647|gb|EFE80549.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 204

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 17/213 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L  ++  +  +             GA    +VR        +D  +           +  
Sbjct: 6   LRAILGAEPDLEVVGEA-----ATGAEAVSVVRATAPDVVLMDVRMPEVDGIRATERVLA 60

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +  +      + P  L    F      +         +     +   +   + ++     
Sbjct: 61  AGGE------RAPRVLVLTTFENDDHVLAALRAGAAGFLLKRAEAETLLHAVRVVARSDT 114

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++    +  + L                     LT RE E L  ++ G T+ EIA  L +
Sbjct: 115 LLFPSSVRALAL------AHDPRRAAEPPWAARLTDREREVLHLMATGLTNAEIAARLTV 168

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
              TV +++A+++ KT T+ R+ A+  A    +
Sbjct: 169 GPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGL 201


>gi|28901302|ref|NP_800957.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836071|ref|ZP_01988738.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ3810]
 gi|260362859|ref|ZP_05775728.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           K5030]
 gi|260880147|ref|ZP_05892502.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AN-5034]
 gi|260895264|ref|ZP_05903760.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           Peru-466]
 gi|260900616|ref|ZP_05909011.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ4037]
 gi|28809815|dbj|BAC62790.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750825|gb|EDM61570.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ3810]
 gi|308085647|gb|EFO35342.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           Peru-466]
 gi|308091763|gb|EFO41458.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AN-5034]
 gi|308107093|gb|EFO44633.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           AQ4037]
 gi|308112345|gb|EFO49885.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus
           K5030]
          Length = 223

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            A       + +     K+    LT RE + +T++S G ++ +IA  L +S NTV  ++ 
Sbjct: 134 FAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLH 193

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           +I +K   K R  A+ +A  N
Sbjct: 194 NIFKKIDVKNRVQALIWAKEN 214


>gi|215402638|ref|ZP_03414819.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 02_1987]
 gi|289744570|ref|ZP_06503948.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 02_1987]
 gi|289685098|gb|EFD52586.1| nitrate/nitrite response transcriptional regulatory protein narL
           [Mycobacterium tuberculosis 02_1987]
          Length = 216

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N + ++V +V+  +       V    + S  +  +   D                GA+  
Sbjct: 3   NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADD---------------GAAAL 47

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L++  L     LD  +       +   +   E             L             
Sbjct: 48  ELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELP--------TRVLLISAHDEPAIVYQ 99

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   +         I   ++       ++    +  +   A               
Sbjct: 100 ALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGL---AGEIRQRAAPVAPV-- 154

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E L  I+  ++   IA    ++ +TV  ++  +  K     R+ A+A A+
Sbjct: 155 ----LSAREREVLNRIACRQSIPAIAAERYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAM 210

Query: 242 RNNIV 246
           R  ++
Sbjct: 211 RQRLL 215


>gi|237786267|ref|YP_002906972.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759179|gb|ACR18429.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 209

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 61/234 (26%), Gaps = 30/234 (12%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
              +  R   V         L  ++ L+  +         T+    +H +          
Sbjct: 6   ADGNAIRVFIVDDQSLIVSALESLLTLERDIDVVGTA---TDAHDLTHRIADSH--ADVA 60

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +           +                 +    F                +  
Sbjct: 61  LIDIEMPGIDGIQATADLTEHG---------HCRVIIVTTFGRPGYLQRALNAGARGFVV 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               V  +   +  ++    II                +  ++       D  LT RE +
Sbjct: 112 KDSPVETLTSAIRDVYAGETIIP-----------LQLHDKVRATG-----DNPLTARERD 155

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L     G T   IA  L +S  TV N+I+  + KT T TR+ A   A     +
Sbjct: 156 VLRKALTGATIASIASTLFLSPGTVRNHISRAIAKTNTTTRAEAATVARDAGWL 209


>gi|225009965|ref|ZP_03700437.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-3C]
 gi|225005444|gb|EEG43394.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-3C]
          Length = 209

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 71/238 (29%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++          +S +   ++       +  T      +   T              
Sbjct: 2   IKILIADAHPIVMMGLSMVVNSAEEFQLQDAVATTTQLFTAVEKQT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++      ++     + +  +    ++                ++      
Sbjct: 48  ------PDIVILEMDIPEINGIATVRKLKEINPNIKVLIFSSQS---ETVYALSAIRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S T  + +I   L  L      +      ++           KS D       +L+
Sbjct: 99  CGYLSKTARIDQILTALTQLKEGKIYLTHSLSEQL--------KKEKSGDKEKSAFRKLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  ++ GK + E+A  L I+  TV+ Y + +M+K         + +A    +
Sbjct: 151 SREIEVLKLLASGKKNKEVAGGLDINEKTVSTYKSRLMKKLNVTNIVDMLQHAKALQL 208


>gi|149371877|ref|ZP_01891196.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355017|gb|EDM43578.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 223

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI +  ++      +  + ++ D +  +            +                  
Sbjct: 3   INIAIADDELLFRQGLRAILSKHDDINILFDASDGKELVDELN-------------TAKV 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +    D  +         + +  +     Y  ++    +    + T P  +   A   
Sbjct: 50  KPEIIITDLKMPEMDGVQATKIILDT-----YPDIK---VIALTSYFTKPFIVNMIAIGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   +  +   G          I   A  +         +      L+
Sbjct: 102 VAYLAKNSTPALMVKTIREVHTNGFYYDEKVFGYIKNGANKRNTSINLSGFNQN---MLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I +  T+ EI   L ISR TV  +  +++ KT  K  +G + YA+++N+V
Sbjct: 159 KRELEVLELICQQFTTVEIGEKLYISRRTVEVHRNNLLLKTDVKNVAGLVIYAIQHNLV 217


>gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33]
 gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33]
 gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84]
 gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7]
 gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407]
 gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33]
 gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33]
 gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84]
 gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407]
 gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7]
 gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14]
          Length = 200

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L +++     V   ++        G+    L+  +      LD  
Sbjct: 1   MRILVAEDQAMLRDALCQLLCFQDAVEAVLQAEN-----GSQAIALLEKEPVDVVLLDIE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++  +                 +    F              + Y      +
Sbjct: 56  MPEKTGLDVLEWVRGQALP--------VKVVIMTTFKRPGYFERAVKADVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    +    + +                 D+   +   LT  E + L  +
Sbjct: 108 ADLMRTIETVLAGRKEYSPELM-----------------DILLTQRSPLTNLESQLLKLV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG ++ EIA  L +S  TV NY+ SI+ K   + R+ A+  A     +
Sbjct: 151 AEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVKVAQEKGWL 199


>gi|325697545|gb|EGD39431.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|328944949|gb|EGG39107.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 199

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D LA+++ L   V             G      +  +      LD  
Sbjct: 1   MKVLLAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++  +  +  +           +    F              + Y      +
Sbjct: 56  MPHQTGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    +    + +  +                       L+ +E   L   
Sbjct: 108 ADLMKTIHTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAA 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199


>gi|261345944|ref|ZP_05973588.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
 gi|282566031|gb|EFB71566.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
          Length = 206

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 11/119 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +  +        Y     ++  +   +        +                     +  
Sbjct: 91  DIYSAIDAGAQGYLLKNSELDMLINSMKKAIEGHHVFSE-----------KVYQHLITRH 139

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   LT RE E L  ++ G  + EI+ +L IS  TV  +I ++++K   ++R  A
Sbjct: 140 QSKDPLSTLTRRECEILHEMAAGLKNREISQLLFISEETVKVHIRNVLKKLRVRSRLEA 198


>gi|117617726|ref|YP_855569.1| LuxR family DNA-binding response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559133|gb|ABK36081.1| DNA-binding response regulator, LuxR family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 212

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 68/238 (28%), Gaps = 29/238 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +     + +  L         +             + ++E      F  ++   
Sbjct: 4   KIILADDHPLILTGIRSL---------IAQHQAGCEIVAEAHQVSEL-----FKTLQQHH 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +  D   D +  +   +++       + + +                   +
Sbjct: 50  CDLLITDFSMPGDSRSDGLAMIQSLKRNY-----PQLSIIVLTQIQNAGILRALLQLGVS 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   ++ +   +  +      +       +           +S   +  +  +LT 
Sbjct: 105 GILLKKAVISELSDAIHHVLSGQEYLGHSVKMLLA----------ESGMTNPDEPLQLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E E +  ++ G +  ++A  L  S  T++    S M++    + S    YA    +V
Sbjct: 155 KENEVVRLLASGMSVSQVAEYLNRSIKTISTQKKSAMQRLGLHSDSALFQYAKEKGLV 212


>gi|325928170|ref|ZP_08189379.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541466|gb|EGD12999.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 236

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 15/189 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G +   +   +      +D ++      DL R +     +           +        
Sbjct: 37  GLACLQIAARERPDIVLVDVLLPGLNGIDLTRRLMQRSPN--------SRAICIAPSDAC 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +           Y + T   A +   +  +      I       +           +  
Sbjct: 89  TQASAVFEAGAKAYLARTSRFAELLRAIQCVIQDQTYISPQMSRSLI-------AGLRRA 141

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E +   SEG ++ +IA  L +S  TV  +  + M K   ++ +  
Sbjct: 142 AKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGTHRENCMLKLNIQSIAQL 201

Query: 237 IAYAVRNNI 245
             YA+   +
Sbjct: 202 TRYAIAQGL 210


>gi|197337614|ref|YP_002157683.1| transcriptional regulatory protein FixJ [Vibrio fischeri MJ11]
 gi|197314866|gb|ACH64315.1| transcriptional regulatory protein FixJ [Vibrio fischeri MJ11]
          Length = 205

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 60/208 (28%), Gaps = 32/208 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR----WDLFQEQKLDSIVSSDWPFDLV-RCMALS 93
           +D  +S    +  + E  G S           D          +      +L  + +   
Sbjct: 16  VDDELSVRESLVFMLEGYGLSVSEFCSGRAFLDSVDVSTPGCAILDSRMPELRGQDVHEL 75

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM--LLFPKG 151
            K +        + +F      +P  +         +     D   +   +   L   + 
Sbjct: 76  LKQQNSP----LSVIFLTGHGDIPMAVDALKAGAADFFQKPVDGEVLFTAIQNGLTASEK 131

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           R   +D                          F LT RE E L  I +G  + ++A  + 
Sbjct: 132 RYKSQDVHRAY---------------------FTLTAREQEVLKLIVQGMKNQQMADSMC 170

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +S  T+  + +++M+K    +    I  
Sbjct: 171 VSLRTIEVHRSNLMKKLGVNSVVDLIMR 198


>gi|149378247|ref|ZP_01895960.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149357474|gb|EDM45983.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 220

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 60/238 (25%), Gaps = 41/238 (17%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       ++ +  + +L   +  +         + +                 
Sbjct: 24  RVLIVDDHPFFLFGITAILEQENLAREVATVASVADAVDDLRS--------------RPE 69

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +  +    L   +          V                      +    
Sbjct: 70  TSLVLLDLTLQGEAGLSLFSELEQIGL----PVSVVVISSRE----DEASVRAARSAGAV 121

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   +  +                         + S          LT 
Sbjct: 122 GFLPKSAGRRSLVRMVQRVSNG-------------------LLFYPSLPFPSLSPEHLTP 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E LT +++G  +  I   L ++ +TV  ++ +I        R+  +A A    ++
Sbjct: 163 RQLEVLTLLADGLPNKRICQALDLTEHTVKTHLKAIFTHLDVHNRTECVAQARALGLL 220


>gi|332531975|ref|ZP_08407859.1| Two-component system regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038602|gb|EGI75045.1| Two-component system regulatory protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 204

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 59/239 (24%), Gaps = 36/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       V+ L      +  +            + AL   +           
Sbjct: 2   IRVYLVEDQALVRDAVAALLGLDFNIEIIGQASNGQDALNAIEALDSDL----------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + +    +L   +A          ++         F              
Sbjct: 51  HPDIILTDIEMPTMNGIELSEKIAAKF-----PTIKMVIMTT---FSRAGYIRRALTTGV 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   L  +    ++I  +                            LT
Sbjct: 103 KGFILKEAPSEELINALKKVMQGQKVIDPELA-----------------INALDDADPLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E + L   S+G  + +IA  L IS  T  NY++  + K     R  A   A +   +
Sbjct: 146 DKERKALKLASDGLKTSDIAKQLFISEGTTRNYLSDAIAKLNATNRIDAARIAKQKGWL 204


>gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 227

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 24/191 (12%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
            G                +D  +           +           L     +      T
Sbjct: 35  HGDDVVPSCLVHRPDLALVDIGLPGTDGLSATAELRRR--------LPSCKAVILTGLAT 86

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                         +        ++   +  +    R+I  +                  
Sbjct: 87  PAALRRALDAGARGFVVKDTPAGQLAECVRRVVAGERVIDPELA---------------- 130

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +   LT RE+E L   +EG    EIA  L +S  TV NY++ I+ K   +TR  
Sbjct: 131 VAALNARQNPLTTRELEVLKAAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVE 190

Query: 236 AIAYAVRNNIV 246
           A+  A     +
Sbjct: 191 AVTIAREAGWL 201


>gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 201

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 64/225 (28%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D+      L   + +   +  + ++  GA      R        LD  +   
Sbjct: 1   MVRVLIAEDMHMLRKALVALLEFEPDIEVVADFSNGADILPRARELRPDVAVLDIDLPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   ++          +     +               A   + +        ++ 
Sbjct: 61  DGLTAAAELST--------AVPECRTMMLTSLGRPGNLRRALAAHVSGFLLKDSSPEKLS 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R+I                               LT RE+E L + ++G+
Sbjct: 113 DAIRAVAQGERVIDPQLA----------------LAALDDGPQPLTPRELEVLRFAAKGE 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S +IA  L +S  TV NY+ S + K   + R  AI  A     +
Sbjct: 157 ESAQIAAKLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201


>gi|294626735|ref|ZP_06705330.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294667185|ref|ZP_06732408.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292598983|gb|EFF43125.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292603084|gb|EFF46512.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 205

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +A +       S    +  L               
Sbjct: 7   IRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRL--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 52  QPDVLVTDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 104 AGYLLKDAPAEQLVDALRQVHRGGRVIDPQLAIDAWVEA-----------------DPLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 147 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 205


>gi|259507962|ref|ZP_05750862.1| transcription regulator [Corynebacterium efficiens YS-314]
 gi|259164457|gb|EEW49011.1| transcription regulator [Corynebacterium efficiens YS-314]
          Length = 216

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L    S    +  + T   G      +          D  +     
Sbjct: 4   RILIVDDDPTILRNLPVFFSMAEDLTVVGTAAGGRDALAFMEHTPCDVILSDLSMPGMSG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+  +   +             +    F T    +   A     Y + +     +   
Sbjct: 64  IELLSAVRELDNPPI--------FIAMTGFDTDQAMLGVLAAGSAGYLAKSDPPESVIWS 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGK 201
           +      G  +       +           +  +    +    EL+  E E L  + +G 
Sbjct: 116 VREAIKGGTALSSSCTSRL------VDATIRRGEPPQPRALGVELSSGERETLDLVCQGL 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T+ +IA  L  S   V   +++++RK    +R      A+   
Sbjct: 170 TNAQIARQLHYSEAAVKKQVSAMLRKFQVGSRVALAVKALGMG 212


>gi|157377199|ref|YP_001475799.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157319573|gb|ABV38671.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 209

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 60/205 (29%), Gaps = 26/205 (12%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           +D  ++    +  +    G +           +    ++   ++      ++       +
Sbjct: 10  VDDDIAILDSLSFMLGQFGYNITAFNNGDDFLNTVPLERPACVILDSRMPEVSGQEVQQK 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
             +  +       +F      +P  +         +         +   +          
Sbjct: 70  LLEIDS---PLGIIFLTGHGDMPMAVDAFRKGACDFFQKPVSGKALSCAI---------- 116

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                 +  +L ++             K   L+ RE E L  +++G T+ +I+  L +S 
Sbjct: 117 ------DKAMLYSH---RTFEAQSLKRKLSTLSEREQEVLNLLTKGMTNKQISEALFLSL 167

Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239
            T+  + A +M+K      +    Y
Sbjct: 168 RTIEVHRAKVMKKLEVHNMAELAKY 192


>gi|150376203|ref|YP_001312799.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150030750|gb|ABR62866.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 212

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 66/215 (30%), Gaps = 18/215 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +  L   ++       +     G     L+         LD  +      
Sbjct: 5   VLLVDDHPLLLRGLQDIIAAAPDFTIVGATASGVEAISLISRLQPDIAVLDVAMPGMGGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++R +  +         +    +F     + P+         +      +    +   +
Sbjct: 65  EILRALRGTH--------RFTRVIFLTATISGPQVAEALKMGLSGLLLKEYAPEALLDCM 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G+ +  D + +   ++          DV   +   LT RE E    I  G ++ 
Sbjct: 117 RQVAMGGKWLPADLMEKASQVSE---------DVTLERFSLLTPREREIAALICGGLSNR 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            IA  LG S  T+  ++ +I RK     R+   A 
Sbjct: 168 MIASRLGTSEGTIGIHLHNIFRKLDISNRATLAAL 202


>gi|325520232|gb|EGC99400.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 215

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +        + E   GA+   L    +     LD  + +   
Sbjct: 3   RVILADDHAVMRDGLRYILETAGGFEIVGEASDGAATLALAERGVADVLLLDLSMPAPTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+R +                 L   +                 Y +     A +   
Sbjct: 63  IELIRLVKTHA--------PSLRTLVLTMHAEAQYAARAFKAGATGYLTKDSATAELVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   G  +       +                       L+ RE++ +  I  G+T 
Sbjct: 115 VGKVAAGGVYVSPSAAESLA--------RTLRTPAETLPHEHLSTRELDVMRRIVAGQTV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  L +S  TV+ Y   I+ K      +  I YAVR+++
Sbjct: 167 TQIASALDLSAKTVSTYKMRILEKMELPHEAALIRYAVRHDL 208


>gi|303240659|ref|ZP_07327173.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591727|gb|EFL61461.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 223

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 73/239 (30%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+V+  +     + +  +  + + ++    +                            
Sbjct: 9   INVVIADDIALFRNAMKTIIEQDNGISVTACVSNGKEAVEACQK---------------H 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +                 L    FH             
Sbjct: 54  DPDVILMDIKMPIMNGIEATKIIKKKNS--------LVKVLILTTFHENENICDAFEFGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     +   +   +  +     +  +  ++E            +         F LT
Sbjct: 106 DGYVLKDIEQTELVSAIKNVSKGLNVF-QSNIFENVRKQYNSKKYLEDTGEKEQNSFGLT 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E++ +  I+EGK + EIA  + ++  ++ N  + I++K     R+    +AV++N+V
Sbjct: 165 QKELQLIRLITEGKKNKEIAEQIFVTEGSIKNMSSKILKKLNLADRTQLAIFAVKSNLV 223


>gi|300691205|ref|YP_003752200.1| two component transcriptional regulator, LuxR family [Ralstonia
           solanacearum PSI07]
 gi|299078265|emb|CBJ50913.1| two component transcriptional regulator, LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 215

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V H+  R+     +                          LVR  
Sbjct: 2   IRVMIADDHAVMRDGVRHILERAGNFEVVCEASDGTQVLQ---------------LVREH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      DLVR +                 L   +               
Sbjct: 47  APQVIVLDLSMPGRSGLDLVRQLHTDH--------PAVRVLVLTMHAEEQYVARAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +   G  +      ++              D        L+
Sbjct: 99  AAYLTKESAATELVCALTKVAQGGTYVSPAMAEKLA--------HSLHEDSQIAAHTRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +  G+   EIA  L +S  TV+ Y   +M K    + +  + YA+RN +
Sbjct: 151 DREMEVYRRLVRGEPLTEIAASLCVSAKTVSTYKMRLMAKLQLPSEAALVRYAIRNQL 208


>gi|157151124|ref|YP_001451003.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075918|gb|ABV10601.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 199

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V    +        G      ++ +      LD  + + 
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVEEVYQAE-----DGQKAIDCLKSENLDVAVLDVEMPNK 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKENRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   ++G 
Sbjct: 112 KTIHTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAADGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199


>gi|90420412|ref|ZP_01228319.1| two-component response regulator, possible glycerol metabolism
           activator [Aurantimonas manganoxydans SI85-9A1]
 gi|90335140|gb|EAS48893.1| two-component response regulator, possible glycerol metabolism
           activator [Aurantimonas manganoxydans SI85-9A1]
          Length = 227

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 60/222 (27%), Gaps = 21/222 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  L  T                    L          LD  +     
Sbjct: 19  DHPLFRGALREILTSLPDTAEIVEAADFDQAAA-----ALAANPEADLMLLDLNMPGTSG 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +           +              P          + +   +   A IR  
Sbjct: 74  LSGMALLRADH-----PSVPIAIVSG---SEDAPIVARALDLGASGFIPKSSGFAEIREA 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           ++ L      +  D   E        +           +   LT ++   LT +  G  +
Sbjct: 126 ILALLAGEVFLPPDISLE--------SERDPEVTELIQRIRTLTPQQTRVLTMLGRGLLN 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +IA  LGIS  T+  ++++++ K    +R+ A+    R  +
Sbjct: 178 KQIAYELGISEATIKAHVSAVLLKLGVDSRTQAVIRLSRLGL 219


>gi|332703486|ref|ZP_08423574.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553635|gb|EGJ50679.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 213

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 4/130 (3%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
           H L   +       +           +  G+  +        R+ L              
Sbjct: 87  HELTLELQALRNGADGLFRECDPPDLLIKGIASILHGDLWYSREVLSRF----VRDERKV 142

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +           LT RE E L  I+ G +++EIA  L IS +TV  +  +I  K     R
Sbjct: 143 RPQATQSADTSTLTPREREVLERIAAGASNEEIAKNLFISPSTVKTHAYNIYAKIRVPNR 202

Query: 234 SGAIAYAVRN 243
             A  +AV+N
Sbjct: 203 IQAALWAVQN 212


>gi|256425770|ref|YP_003126423.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256040678|gb|ACU64222.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 225

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 71/221 (32%), Gaps = 21/221 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV----------RWDLFQEQKLDSIVSSDWPFD 85
           +   D  V     +  L       +F+L             +  + Q  D ++       
Sbjct: 11  VAIADDHVLVRKALGRLINTF-TDYFILFEASNGEEVIKIINNRELQLPDILILDVNMPG 69

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +      +  + ++  ++          +     I         Y     +   ++    
Sbjct: 70  MNGYETAAWINNHFPQIKVLALSML---NDESVIIKMLKSGAKGYIMKNVEPDDLKEAFD 126

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  K   +          ++    +  +   +   +  ELT +E   L ++    +  E
Sbjct: 127 SIIKKDFYLPD-------YISGKVISGLQKDVLSLSEKIELTPKEKTFLQFLCTELSYKE 179

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  + +S  T+++Y +S+  K   KTR G + + +R  ++
Sbjct: 180 IAQKMFVSPRTIDDYKSSLCDKLKVKTRVGLVIFGIRYGLI 220


>gi|304392975|ref|ZP_07374906.1| glycerol metabolism activator [Ahrensia sp. R2A130]
 gi|303294973|gb|EFL89342.1| glycerol metabolism activator [Ahrensia sp. R2A130]
          Length = 279

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 13/227 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P      A    L   +   M        + A +F  ++  L +E  +D +
Sbjct: 59  ARIVIVDDHPLFRG--AMRQALSSGLDLGMGTAGPVAILEAGNFRELQKLLSEETDIDLV 116

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       +     L      Y  +                         + +   +  +
Sbjct: 117 LLDLAMPGVSGFSGLMTLRSEYAAIPVVIVS---ASDDSVTVARALDLGASGFVPKSAPM 173

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             IR  +  +         D            A           +   LT ++   L+ I
Sbjct: 174 ETIREAITAVMEGDVWKPADL--------DLAAEGDPEIADLMTRLQTLTPQQSRVLSMI 225

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           S+G  + +IA  L +S  TV  ++++++ K    +R+ A+    +  
Sbjct: 226 SQGLLNKQIAYELSVSEATVKAHVSAVLSKLNVDSRTQAVIQISKLG 272


>gi|293607035|ref|ZP_06689378.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814525|gb|EFF73663.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 218

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 58/225 (25%), Gaps = 18/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVS--WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           +  L    D       L   +       +    + + A + L+          LD  +  
Sbjct: 1   MPVLLIADDHPLFREALRGVIGRVLPGSVIHEADQISALYDLVDACPDADLLLLDLDMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +  +           L                           +   +FD   +
Sbjct: 61  SSGLEPLGHLRARH-----PQLPIVIVS---AHEDPLLIRRSMDYGAMGFIPKSFDAETL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  +   G                                 +LT ++   L  +  G
Sbjct: 113 GTALRHVLNGGTWWPDPVRA--------ITAAPARAPTLAATVRDLTPQQFRVLQMVGAG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + +IA  L IS  T+  ++ +IMRK     R+ A+  A R  +
Sbjct: 165 LLNKQIAHELQISEATIKAHMTAIMRKLRVTNRTQAVLIAGRLGL 209


>gi|330981978|gb|EGH80081.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 229

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 21/233 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
             T   +       +++ +  LD   +    +  L     +   +  ++           
Sbjct: 4   AMTKSATRDLLIQQMVSTITELDGQAAIENALEWLRRECNSERAMFFQFKGPVLLTF--- 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--------------FCPVFHTLPENITPP 123
           ++S+            +      V++                       +  L +     
Sbjct: 61  ITSNVDDAWGDAYRQHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVTAFYDALVDTCELL 120

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +   Y +     A     +  L    R I  ++ + +  L     ++ +         
Sbjct: 121 PAISYGYTN-HCRGADSVTSVCTLGEVARPISAEQKYLMSSLMPVLHSVARGLKFC---S 176

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K     R+ A
Sbjct: 177 RGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQA 229


>gi|260774411|ref|ZP_05883325.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP
           69.14]
 gi|260610538|gb|EEX35743.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP
           69.14]
          Length = 117

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 12/128 (9%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                       Y S       +   +      G  +  D            A+   +  
Sbjct: 1   MVEKALELGAKGYLSKRCSPDELIQAVKTCASGGCYLTAD-----------IASRLVTPK 49

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE E    +++G     IA  LG+S  TV+ + A+ M K          
Sbjct: 50  HPISPLASLTPREREVCQLLADGIDVKTIAQQLGLSPKTVHVHRANGMEKLGVSNTVALA 109

Query: 238 AYAVRNNI 245
              + +N+
Sbjct: 110 NL-IHHNL 116


>gi|269127167|ref|YP_003300537.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268312125|gb|ACY98499.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 25/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   ++    +  + E   G      VR        LD  +      
Sbjct: 4   ILLADDEHLIRGAVAALLNLQPDLEVVAEIGRGDQVLAAVREHDPDVAVLDIDMPGADGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            +   +  +          R                   A     + +       +   +
Sbjct: 64  TVAEQLRETG--------ARCAVCILTSLGRPGYLRRAMAAGVRGFIAKDAPAEDLAAAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   GR +                +   +       D  LT RE + L  I  G  + 
Sbjct: 116 RKVHAGGRYL----------------DAELAASAMAAGDNPLTERERQILRLIGRGMEAP 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L +S+ TV NY++S M K     R  A+  A     +
Sbjct: 160 GIAEALHLSQGTVRNYLSSAMTKLDAPNRLAAVRTAEEMGWI 201


>gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 199

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + E     +     +      +                        F L    
Sbjct: 2   IKIAIIDDHELVLQGLYDRLKKETHFEVVGAFTSYQDLL--------------FCLKYK- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++     FDL+  +      +          +    F+    +        
Sbjct: 47  SVDVLIIDLMLKDIHGFDLIAQIQQK--YQIVP-----KMILISGFYEPLLHKRALDLGI 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    ++I  D L +                    ++  LT
Sbjct: 100 KAFLPKECSYDELISTVYNVAKGNQVIPDDLLQK-------------------QENHLLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A+R  ++
Sbjct: 141 ESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKLI 199


>gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 234

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 22/223 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPF 84
           P        +  +D        +  + +       L+   D       ++D ++   +  
Sbjct: 14  PAARTRPVTIALVDDYDVVLKGLAHMFDDY-RDRVLVAEIDANAALSDEIDIVLYDSFAQ 72

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSLTFDVARIR 141
                   S+  +   +++ P      V+    +            + Y S       + 
Sbjct: 73  P------ESDHHEIAELVRNPRARRVVVYTWNFQPELIADARRQGVHGYLSKALPARELV 126

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +     +  +  L                     GK   +T RE E L  I++GK
Sbjct: 127 EALERIHAGEELFNQAPLRAAS----------APSLDWPGKREGITDRESEILALITQGK 176

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ E+A +  +S NTV +YI SI RK   ++R+ A+ + V + 
Sbjct: 177 SNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHG 219


>gi|326315935|ref|YP_004233607.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372771|gb|ADX45040.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 216

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 59/227 (25%), Gaps = 26/227 (11%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL-FQEQKL 74
           D  R   V   P   D       +   +  T  +    E  G    L +   +       
Sbjct: 8   DPIRVLLVDDHPLVRD------GVRMRLEATPHIRVAAEAGGVQEALELAAAVAPDIVLT 61

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      +L                     +   +                 Y    
Sbjct: 62  DIRMPDGSGIELAAAFRER--------FPLVRVMVLSMHQDAEYVRRAVGLGVRGYVLKD 113

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++   +  +   GR         +                   +   LT RE   L
Sbjct: 114 APAGQLVQAIEAVRAGGRHFSEGVRALVD-----------GGQPVPPQARSLTPREAAVL 162

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             ++EG+++ +IA  +G S  TV  +   + RK     ++  + YAV
Sbjct: 163 RLLAEGRSNKDIAERMGTSVRTVETHRLHLRRKLRIDGQAALVKYAV 209


>gi|212634670|ref|YP_002311195.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212556154|gb|ACJ28608.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 219

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 32/242 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + +NI++  +             R+ L   +        W        +   A   L
Sbjct: 1   MKPENLNIIIADDHPLF---------RNALRQALATAFTNTQWFE-----ADSADALQNL 46

Query: 63  LVRWDLF-QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           L   D+      LD  +           + L    +   V+                   
Sbjct: 47  LDNSDIEYDVVLLDLQMPGSHG--YSTLIHLRTHYQELPVVVISAHEDNTTI------SR 98

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + +   +  +  +   L  +      +      E+  ++    +          
Sbjct: 99  AIHYGSSGFIPKSSSMETLATALEAVLFGDVWLPEGV--ELQEVSDDGTDQMA------S 150

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+  A+
Sbjct: 151 KLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV-IAL 209

Query: 242 RN 243
           + 
Sbjct: 210 QQ 211


>gi|197285381|ref|YP_002151253.1| response regulator [Proteus mirabilis HI4320]
 gi|227355815|ref|ZP_03840208.1| response regulator [Proteus mirabilis ATCC 29906]
 gi|194682868|emb|CAR43196.1| response regulator [Proteus mirabilis HI4320]
 gi|227164134|gb|EEI49031.1| response regulator [Proteus mirabilis ATCC 29906]
          Length = 219

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 18/188 (9%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
             F   R            + +    D+++ +       +  +++       P   ++  
Sbjct: 38  EAFRYCRQYSVNLIIF-YSLPTVSLIDVIKRIKR-----FSPIIKIVVIS--PKIDSIL- 88

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           ++T        +  +    A +   +  +    R I  +   +I L              
Sbjct: 89  SVTLLQLGIEGFIVIDSSAANVLQAIRQVCIGQRYISPEIAMDIALT---------KVQA 139

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE++ ++ I  GK   +IA  L IS  TVN+Y   +  K           
Sbjct: 140 DLNPLHHLSERELQIMSMIIRGKKIAQIAQELNISTKTVNSYRYRMFSKLKISGDVELTH 199

Query: 239 YAVRNNIV 246
            AVR  ++
Sbjct: 200 IAVRYGLI 207


>gi|260777127|ref|ZP_05886021.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606793|gb|EEX33067.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 206

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I++D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 98  ISLLLKGMEKIMQDEMWLSRKVAQDYIEHFRCANSVTTSQAYANLTKREKEIMRLLGHGA 157

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 158 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 196


>gi|144898190|emb|CAM75054.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 213

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 16/222 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + L   +      +      + TE +      +          LD  
Sbjct: 1   MRIILADDHVMLREGLRPFVERIAPGTIIQEAGSFTEAL----AQIEADPSVDLLILDIK 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F  +  +           ++            + E +       + +       
Sbjct: 57  MPGMNGFQGLSTIKTRF-----PAIRCVILSSMADRDHVLEAMRL---GADGFIPKHLSG 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L L+    R I    L +        A+         G+   LT RE + L  +
Sbjct: 109 GAMVSALQLVLSGERFI-PSMLMDSANNQISGASDRSPSGDLLGR---LTPRERDILHLL 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EG  +  IA  L +   TV +++ ++ RK   + R  A+  
Sbjct: 165 REGLPNKVIAARLDVREVTVKSHLGNMFRKLGVQNRLQAMRM 206


>gi|118468506|ref|YP_888233.1| two component transcriptional regulatory protein devr
           [Mycobacterium smegmatis str. MC2 155]
 gi|118169793|gb|ABK70689.1| two component transcriptional regulatory protein devr
           [Mycobacterium smegmatis str. MC2 155]
          Length = 217

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L      L  +           R+ AL               
Sbjct: 2   VTVFLVDDHELVRRGLIDLVRSDPDLDVIGEAGSVSEAMARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      +L R +     D           L    F +    +       
Sbjct: 47  RPEVAVLDVRLPDGNGIELCRDLLSRLPDLRC--------LMLTSFTSDEATLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +     ++       +           +    H      L+
Sbjct: 99  SGFVIKDIKGMDLTHAIKEVAAGHSLLDNRAAAAL-------MKRLRETASHSDPLTGLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +
Sbjct: 152 DQERMLLELLGEGLTNKQIAERMFLAERTVKNYVSRLLAKLGMERRTQAAVF 203


>gi|111024836|ref|YP_707256.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|29647414|dbj|BAC75412.1| response regulator [Rhodococcus sp. RHA1]
 gi|110823815|gb|ABG99098.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  +     S +  +   +     +            +                  
Sbjct: 2   ISVVVCDDHGIIRSGIRRILETTTDFHLVASAPTGELLLQAVRDFA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +S     DL+         +   +      +   ++              
Sbjct: 48  -PELVVLDIRLSDCNGLDLLE--------QISAISPETRVVMLSMYGAKGYVDKAKTRGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +      +           +                   L+
Sbjct: 99  RGYITKECLDEELVSVLYTVMKDEGFVSFRADTTEPGGSESLLEANIDS---------LS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    ++
Sbjct: 150 SRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGLL 208


>gi|282866789|ref|ZP_06275826.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282558335|gb|EFB63900.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 225

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 65/242 (26%), Gaps = 26/242 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      V +V+  +++     +  +      L  +                    G + 
Sbjct: 1   MEARHGPVRVVVVDDEQLVRMALRLVIDGEPDLTVVAEAAD---------------GEAA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             +V         +D  +      D  R +                 L    F +    +
Sbjct: 46  LAVVDEQRPDVVLMDVRMPGRDGLDTTRELLTRPAPP--------RVLMLTTFDSGDLVL 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA---YQANMFKSYD 177
                    +       +RI   +  +     ++       +   A          +S +
Sbjct: 98  GALRAGALGFVLKDTPPSRILDAVRTVADGNPVLSPTATARLIAAATGPDSSHARDRSRE 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE E    I++G  + +IA  L I+  TV  +  S+  K A + R    
Sbjct: 158 AARERLSVLTERERETAQAIADGLGNPQIAERLRITVATVKAHTGSLFAKLAVENRVQIA 217

Query: 238 AY 239
             
Sbjct: 218 LL 219


>gi|167035315|ref|YP_001670546.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166861803|gb|ABZ00211.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 207

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 19/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D      + +  L E  G          +    L ++   D +V       L    
Sbjct: 4   VLIVDDHPVIRLAVRMLMERHGYDVVAETDNGVAALQLTRQHLPDIVVLDIGIPKLDGLE 63

Query: 91  ALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            ++    +    +        P   +    +         Y     ++  +   +  +  
Sbjct: 64  VIARMATFSPGSKVLVLTSQAPGNFS----MRCMQAGAAGYVCKQQELTELLSAIKAVLS 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                    L          A+  +           L+ RE+  L  ++ G+++ EIA  
Sbjct: 120 GYSYFPNQALH---------ASRGRGAASEADMVNRLSAREMTVLQQLARGRSNKEIADS 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV+ Y + ++ K   ++    I  A R  +
Sbjct: 171 MYLSNKTVSTYKSRLLLKLNARSLVDLIELAQRQGL 206


>gi|73540995|ref|YP_295515.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72118408|gb|AAZ60671.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 210

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 40/236 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R                      A          
Sbjct: 14  TVFIVDDDEAMRDSLTWLLEGNGYQVR---------AFSSAEQFLAAYDAGQV------- 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   M     D    ++      F      +P  ++       
Sbjct: 58  -SCVILDVRMPGMSGPELQERMIAENIDI--PIV------FITGHGDVPMAVSTMKRGAI 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +                 +   A    +  +          +LT 
Sbjct: 109 DFIEKPFDESELRSLV---------------ERMLQKARTDHSAAREQRAAKDLLGKLTT 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  N
Sbjct: 154 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSRN 209


>gi|326385636|ref|ZP_08207270.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209970|gb|EGD60753.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 213

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 60/222 (27%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  +           ++         LD  + +   
Sbjct: 3   RLMIADDHPIFRSGLKWALEQFPEVGEVRVASSFEELTAILPEWAPDIVILDLNMPTLTA 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +                 L         + I       + Y +   +V+ +   
Sbjct: 63  PESLRYLRQRHG--------GLPVLILSASGEPDDVIGTLRAGASGYITKASEVSELLAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + ++   G  +    +      A                   LT R+ E LT   +G  +
Sbjct: 115 VKVILDGGVFLPDGIIA-----ARCDPIGPARPAEPSPSVPRLTRRQYEVLTLTLQGHAN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IA  L +S  TV  +++++MR      R   +    R   
Sbjct: 170 KVIAHNLSMSEGTVKTHLSAVMRLYGVNNRVQLLREVERVGY 211


>gi|153007753|ref|YP_001368968.1| two component LuxR family transcriptional regulator [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559641|gb|ABS13139.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           anthropi ATCC 49188]
          Length = 214

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 14/220 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H     D       L   +S   +   + E         +  +      L   ++     
Sbjct: 2   HFIIADDHPLFRGALRQVLSGQSQSVEIIEVGDFDAVKKLVGEREDIDLLLLDLTMPGGT 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L   + L        V+               E         + + S +  +  I   +
Sbjct: 62  GLSGLVTLKALQPALPVIIVSATDDAATIRHAVEL------GASGFISKSASMETIGEAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         D   +               +    +   LT ++   LT ++EG  + 
Sbjct: 116 RAVLAGDIWTPADIELD--------HPHDPEIEALIARLRTLTPQQTRVLTMLAEGLLNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 168 QIAYELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|325686801|gb|EGD28826.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 199

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +           D LA+++ L   V             G      +  +      LD  
Sbjct: 1   MKVLLAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++  +  +  +           +    F              + Y      +
Sbjct: 56  MPHQTGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    +    + +  +                       L+ +E   L   
Sbjct: 108 ADLMKTIQTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAA 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199


>gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus
           nasoniae]
          Length = 243

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 20/191 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM-------- 126
           D I+ SD   +LV      +      V+ +      P        I     +        
Sbjct: 43  DMIIISDLSDELVNNYLNQKTQNIDPVIIKALNQLAPFSWDENIKINSIWPVKKVFEPMK 102

Query: 127 ---DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW------EIGLLAAYQANMFKSYD 177
               + Y  +  D     + L+ L+    +I     +      E+  L  +   M  S  
Sbjct: 103 MLNISGYAFVLHD-HLNNLALLSLYMDKFLIKDIEFFIKSNKGELQGLLIHTHEMLLSLY 161

Query: 178 VHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +         + RE E L W S GKT  EI  IL IS  TV  +I ++++K        
Sbjct: 162 QNENTTEKIIFSPRESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAKH 221

Query: 236 AIAYAVRNNIV 246
           AI+ +V+ N++
Sbjct: 222 AISLSVKLNLI 232


>gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 211

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 21/224 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDW 82
            S L  R++  D        + A+ E       V  +       +L      D ++    
Sbjct: 1   MSGLPIRILIADDHPVVRAGLRAVLETEPDFAIVAEAATAEEAVELAAAGGSDVVLMDLQ 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               +     +          R        + T  + +         Y         +  
Sbjct: 61  FGRGMNGSQATAAITARPGAPRVLV--VTTYDTDADTLPAIEAGATGYLLKDAPPEELAA 118

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +           A    N  ++          LT RE E L+ ++EG +
Sbjct: 119 AVRTAAAGRTTLAPAV-------ADRLMNRLRA------PHAALTRRETEVLSLVAEGLS 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  I+  L ++R TV +++A +  K    +R+ A+A A+   ++
Sbjct: 166 NQGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGVI 209


>gi|306822493|ref|ZP_07455871.1| DNA-binding response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801387|ref|ZP_07695514.1| putative oxygen regulatory protein NreC [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554038|gb|EFM41947.1| DNA-binding response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221902|gb|EFO78187.1| putative oxygen regulatory protein NreC [Bifidobacterium dentium
           JCVIHMP022]
          Length = 220

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 63/228 (27%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            + +     P     LA ++               T   G +       +      +D  
Sbjct: 1   MKVAIADDDPIVCSSLATILAATGAAEV-----PWTANSGEAAMSKYDENAPDMLLIDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +  D           L    F                Y     DV
Sbjct: 56  MPGMDGLTASERILHAHPD--------ARILVLTTFADEAYIAKAMEIGTKGYLIK-QDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-------HWGKDFELTGRE 190
           + +   +  +     ++  + L ++           +  +           +   LT RE
Sbjct: 107 SSVIPAVQAVMAGQIVMGAEVLAKLRFANGTAPTAARPNEPQDSGCMDAPDRFAHLTDRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +  ++EG  + EIA  L +S  TV N I+ I+ KT    R+    
Sbjct: 167 RDVVELVAEGLDNREIAAKLFLSEGTVRNRISDILAKTNISNRTKLAV 214


>gi|270262334|ref|ZP_06190606.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044210|gb|EFA17302.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 220

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 31/234 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  +     + V  L      L  +                    G     L      
Sbjct: 13  ILLIDDHPMLRNGVKQLIAMDPRLQVIAEAGN---------------GEQGVALAEEHDP 57

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      + +  + ++       V          V +   + ++      + 
Sbjct: 58  DLILLDLNMPGINGLETLDRLRMTALSGRIVVF--------SVSNHEDDVVSALKRGADG 109

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTG 188
           Y     +   +   +        ++       +           +       +D + LT 
Sbjct: 110 YLLKDMEPEDLLKAMHQAAAGQMVLSEALTPVLA-------ASLRENRPSAERDIQQLTP 162

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  + ++
Sbjct: 163 RERDILKLIAQGLPNKMIARRLTITESTVKVHVKHLLKKMKLKSRVEAAVWVLQ 216


>gi|302537766|ref|ZP_07290108.1| two component system DNA binding response regulator [Streptomyces
           sp. C]
 gi|302446661|gb|EFL18477.1| two component system DNA binding response regulator [Streptomyces
           sp. C]
          Length = 209

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 65/222 (29%), Gaps = 19/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +        + E   A        +L   + +D ++      
Sbjct: 4   RLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAER----AVELAASEPVDVVLMDLQFG 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +   A +          R        + T  + +       + Y         +   +
Sbjct: 60  AGMHGSAATAAITARPGAPRVLV--LTTYDTDADILAAVEAGASGYLLKDAPPEELAAAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +                   +  D        LT RE+E L  +++G ++ 
Sbjct: 118 RTAAAGQSALAPAVA-------------LRLMDRMRTPAEALTKRELEVLQLVADGLSNQ 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+  L +S+ TV +++  +  K    +R+ A+A A    ++
Sbjct: 165 QISKRLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLI 206


>gi|291326201|ref|ZP_06123556.2| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
 gi|291315361|gb|EFE55814.1| nitrate/nitrite response regulator protein NarL [Providencia
           rettgeri DSM 1131]
          Length = 212

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 34/232 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  +++  E       +  L              C          L            
Sbjct: 7   MSKYTVMIVDEHPLIRLGLRQLINTDTHFIVTAESSCCYEALSIARQL------------ 54

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D+ +     F+ +R +     + Y  VL   T           +      
Sbjct: 55  ---QPNLIIIDTNIQGIKTFETIRLLRKHCNNSYLLVLSASTIKT--------DIYGAID 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   + ++  +   +        +                     S   +     
Sbjct: 104 AGAQGYLLKSSELDMLFYSMKKASRGQLVFSE-----------KIYQHLISRHNYNDPLS 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            LT RE E L  ++ G  + EI+ +L IS  TV  +I +I++K   ++R  A
Sbjct: 153 SLTRRESEILHEMAVGLKNREISNLLFISEETVKVHIRNILKKLRVRSRLEA 204


>gi|229817720|ref|ZP_04448002.1| hypothetical protein BIFANG_02992 [Bifidobacterium angulatum DSM
           20098]
 gi|229785509|gb|EEP21623.1| hypothetical protein BIFANG_02992 [Bifidobacterium angulatum DSM
           20098]
          Length = 225

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +D    S +  + T S     +   +       +            ++     
Sbjct: 1   MKIAIADDDPIVCSSLQTILTASGTADVLWTANDGEETCRQ------------YMAGPAQ 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +   +        +    LF   F          A   
Sbjct: 49  HPDVLLVDVQMPGLNGIEAARRILEFD--------KAARILFLTTFADQQYISQAMALGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY--------DVH 179
             Y     DVA +   +  +     ++  + L ++    + + +  ++            
Sbjct: 101 RGYLIK-QDVASVCPAVQAVMAGQIVLGAEVLGKLTGSPSNRNDHAENRHTENGYGDGEL 159

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 L+ RE +    +++G  + +IA  L +S  TV N I+ I+ K A   R+    
Sbjct: 160 ANALATLSERERDVARLVAQGLDNRQIAAQLFLSEGTVRNRISDILDKLALTNRTQLAI 218


>gi|170698172|ref|ZP_02889251.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170136937|gb|EDT05186.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
          Length = 204

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 23/219 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D    +I L   +        +     G S + L + +      +D  + +    
Sbjct: 4   ILLVDDHPIYLIALSTLLQQERIAENVAVAKDGESAWELYKTEQPDLMIVDLNLPTLSGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D V+ + +S      + ++           T        A   N Y   T D++++   +
Sbjct: 64  DFVKRVRVS-----DSHVRILVFSS---ARTEVMAGKIRAIGANGYVQKTEDISQMLNAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                                     +              L+ RE+  L+++ +G ++ 
Sbjct: 116 RATLSGFDCFPSAA-----------GDPLSGSGRIA---AALSPREITVLSYLVKGHSNQ 161

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EIA +L +S  TV+ + A I +KT          +A  N
Sbjct: 162 EIADLLHVSHKTVSTHKAHIFQKTGITNIVDLAEFAREN 200


>gi|330957744|gb|EGH58004.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 208

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     L R  L     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVIAETDNGVDALQLAREHLPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  +A                   P   +    +         Y     D+  +  
Sbjct: 61  GLEVIARLAA----MTLPFKVLILTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L        +                 L+GRE+  L  ++ GKT
Sbjct: 113 AIKAVLSGYSYFPNQAL--------HTVRSSMGNASESDMVDRLSGREMMVLQQLARGKT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K    +    I  A RN +V
Sbjct: 165 NKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGLV 208


>gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 217

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAV 208
                     E  +   Y      +      +D    L+ RE+E L+ ++ G T+ EIA 
Sbjct: 119 RAYYPAAETLENRVKPQYLPEAPPAAGQTQNQDLLEPLSERELEILSLMASGHTNSEIAR 178

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L ++  TV +++ +I RK   K R  A++ A    ++
Sbjct: 179 ELYVAVGTVKSHVNNIYRKLGAKNRVEALSRARELGLI 216


>gi|83310354|ref|YP_420618.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945195|dbj|BAE50059.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 209

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 67/243 (27%), Gaps = 42/243 (17%)

Query: 3   FEIQQVN---IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS 59
             +QQ     IV+  ++    S +  L +  D             +   +          
Sbjct: 1   MAVQQSRPIVIVIAEKNPLLQSSLIKLFSGDDRFTVAAVTSDGERFIEAVEKT------- 53

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
                    F    +   +      D    +           L   T    P        
Sbjct: 54  --------PFDVGIIGWEMP---YLDGRGVLQTLRTRVDAPRLIVYTGSPNPDV-----P 97

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     +CS      ++   ++ +     +     +  +                 
Sbjct: 98  RQAMTLGAAGFCSKREPPEQLLDTIIAVAAGRMVFPFIDVSSLA---------------- 141

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE E L  ++ G T+ ++A  L IS NTV  ++ ++  K     R+ A+A+
Sbjct: 142 SDPLAGLTPRERELLAALAGGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGNRAQAVAF 201

Query: 240 AVR 242
            ++
Sbjct: 202 YLK 204


>gi|307941454|ref|ZP_07656809.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4]
 gi|307775062|gb|EFO34268.1| transcriptional regulatory protein FixJ [Roseibium sp. TrichSKD4]
          Length = 198

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 34/210 (16%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  + E  G +       D               LD  +      +++R 
Sbjct: 10  VDDDPAVRDALSVVFETEGFTVEAFSDGDKFIESASSKNPACILLDVHMPGRSGIEILRA 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +   +      +     +   P        +       + +    F        ++    
Sbjct: 70  LNAEDYP--APIFIISGQGDIP------MAVEAIRNGAHDFIEKPFSAE----AVVKRIE 117

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +G             +AA            +     LT RE E L  I+EG ++ E    
Sbjct: 118 EG-------------IAARAGRADAQAKQGFQGADLLTRRETEVLQEITEGASNKEAGRK 164

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LGIS  TV  + A IM K   +  +  +  
Sbjct: 165 LGISPRTVEVHRARIMEKLGARNAADLVRI 194


>gi|169825087|ref|YP_001692698.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831892|dbj|BAG08808.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 208

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 19/173 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSE-KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           D ++      D    +  +E   K    ++       P    +           + +   
Sbjct: 50  DLVIMDILMKDGSNGLDAAEKIKKLKPEIKIIAVTSMP---EVSWMNRAKEIGIDSFWYK 106

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 I   +        I   +                    +   K  ELT RE+E 
Sbjct: 107 EISKEEILEIIQRTLAGESIYPLET---------------PEVKLGMAKSTELTPREIEV 151

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G  +D+IA  LGIS NTV  +I  ++ KT   +R+     A     V
Sbjct: 152 LRLLTTGAGNDQIAEELGISLNTVKTHIKHMLDKTEFTSRTQLAIQARITGFV 204


>gi|33867217|ref|NP_898775.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
 gi|33669051|gb|AAP74045.1| putative response regulator (IpbT) [Rhodococcus erythropolis]
          Length = 209

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  +     S +  +   +     +            +                  
Sbjct: 2   ISVVVCDDHGIIRSGIQRILETTTDFHLVASAPTGELLLQAVRDFA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +S     DL+         +   +      +   ++              
Sbjct: 48  -PELVVLDIRLSDCNGLDLLE--------QISAISPETRVVMLSMYGARGYVEKAKTRGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +      +                    S  +       L+
Sbjct: 99  RGYITKECLDEELVSVLYAVMKDEGFVSFRADTT---------EPGGSEGLLEANIDSLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    ++
Sbjct: 150 SRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGLL 208


>gi|118581881|ref|YP_903131.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118504591|gb|ABL01074.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 212

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 67/228 (29%), Gaps = 21/228 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSI 77
           R   V         + R++          +     E   G     +     +    LD  
Sbjct: 3   RILIVDDHTIVRQGVIRVLQ-----DILEQPVEFHEACTGRQTLDMACSCEYNLVLLDIS 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++++ +           L        P        +       + Y +     
Sbjct: 58  LPDQNGLNVLKALQQKH-----PRLPVIMVSTHP---EEHYAVRALRAGASGYVNKGDAA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             ++  +  +    R +   +       A   A+              L+ RE +    +
Sbjct: 110 VVLKEAIEKVLAGRRYVTPSQ-------AELLADALCDGAEPAVLHHALSDREYQLACMM 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + GKT  EIA  L +S  TV+ Y   ++ K   ++ +  I Y ++N +
Sbjct: 163 AAGKTLTEIARELSLSVKTVSTYRTRVLEKLHLRSTADIINYCIQNGL 210


>gi|297564113|ref|YP_003683086.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296848562|gb|ADH70580.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 223

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  ++      ++ L    D L  +  +         +                  
Sbjct: 24  IKIVLADDEHLVRGAIAALLGLEDDLEVVAEVGRGDEVVDAVLR---------------H 68

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +      ++   +     D           +    F          +   
Sbjct: 69  GAEIAVLDIEMPGATGLEVAARLRTDAPD--------CGVVILTSFGRPGYLRRALSSGA 120

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +    V ++   +  +   GR I  D                       G +  LT
Sbjct: 121 RGFLAKDAPVDQLAGAIRRVHEGGRYIDTDLAAA----------------AMVGGESPLT 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   S+G T   IA  L ++  TV NY+++ + KT    R  AI  A     +
Sbjct: 165 DRETEVLRAASDGATVARIAAALHLTEGTVRNYLSNAIGKTGADNRMSAIRTAQDMGWL 223


>gi|157059879|dbj|BAF79686.1| putative LuxR family two-component system response regulator
           [Streptomyces kasugaensis]
          Length = 217

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 58/228 (25%), Gaps = 14/228 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R       P     +  ++     +             G     L R        LD  
Sbjct: 2   IRVLVTDDEPLIRAGIRMILSSADDIDVVAEA-----ANGREAIELARSRHVDVVLLDIQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +  +  +        +     L    F      +    G    +       
Sbjct: 57  MPVMDGLTALTELHRT--------VPDTRVLILTTFGEQQNVLRALTGGSAGFLLKDSAP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +         +       +   +          +    +   LT RE+E L  +
Sbjct: 109 AELMRAVRAAAAGDAYLSPGATRHVVD-SLASGRSAHRAEQARRRLETLTDRELEVLALL 167

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG ++ +    + +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 168 GEGLSNADAGQRIHMSEATVKTYVSRILAKLECENRVQAALLARDAGL 215


>gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 215

 Score = 95.0 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 12/179 (6%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                +   D + ++ + FDL+     +        L R  +    +    P++      
Sbjct: 39  IHNINKDLNDPVDNTLYLFDLMEADRRTTVLWQS-ELSRCRQRNRILLLNTPDDYQNQDI 97

Query: 126 MD----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 +     + D   +  G+  +        +         A+Y  +    Y  H  
Sbjct: 98  ESWPNISAVFYPSMDERTLTEGIKSVIKGECFFSQGV-------ASYLISQSSHYRYHSP 150

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +   LT RE E L  +  G ++ EIA +L IS NTV  ++ ++ +K + K R+ A+++A
Sbjct: 151 EATGLTQREKEILNKLRAGASNTEIAKLLFISENTVKTHLYNLFKKISVKNRTQAVSWA 209


>gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 248

 Score = 95.0 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  + +   + ++        L  +            M +                
Sbjct: 39  VRILVIDDHQMFAASLAQALQSEPDLLVVGQGTSIAEARNLMASAA-------------- 84

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +          +      +      +    +       
Sbjct: 85  -PDVVLLDHRLPDGDGVGAIAWLHA--------IRPSAKIVVLTATTSDRVLVAAMEAGA 135

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + + T  +  +  G+        ++    L  +           + +    G    LT
Sbjct: 136 AGFIAKTQRLDDVIEGVRAAAQGESVVNVKLLTRLL---------PRLHRQSGGGGAVLT 186

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  ++ G ++ +IA  L IS +TV N++A++  K    ++   ++ AVR+ +V
Sbjct: 187 EREREILDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSKLEVLSIAVRDGLV 245


>gi|294813824|ref|ZP_06772467.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442243|ref|ZP_08216977.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326423|gb|EFG08066.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 205

 Score = 95.0 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 53/191 (27%), Gaps = 8/191 (4%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +             + D  V      D        E       ++         
Sbjct: 16  IEVVGEAGTAEDAMVRIPATRPDVAVLDVRLPDGSGVEVCREIRSRDENIKCLM---LTS 72

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
           F              + Y         +   +  +     ++       +        N 
Sbjct: 73  FADDEALFDAIMAGASGYVLKAIRGNELLTAVREVAAGKSLLDPVATARVLARLRDGNN- 131

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    K   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K   + 
Sbjct: 132 ----PKGDDKLAALTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMER 187

Query: 233 RSGAIAYAVRN 243
           RS A A+  R 
Sbjct: 188 RSQAAAFVARM 198


>gi|329945858|ref|ZP_08293545.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328528306|gb|EGF55284.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 223

 Score = 95.0 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 66/233 (28%), Gaps = 21/233 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V      +  L+ ++ ++  V             G       R        +D  
Sbjct: 1   MRVLIVDDDALVAQSLSTILSVEDDVDVVG-----LGSSGPEAIERYRELAPDILLMDIQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +   +             +F   F      +         Y     DV
Sbjct: 56  MPGGDGLSAAEQILAED--------AGARIVFLTTFSDDEYIVRALKMGSRGYLIK-QDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK-------SYDVHWGKDFELTGRE 190
           A++   L  +     ++  + L     +                  D        LT RE
Sbjct: 107 AQVAPALRSVMAGVCVLEGEVLERSATMGLSARPQASGTDRGREHQDPRSTAFAALTDRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E +  ++EG  + E+A  L +S  TV N+I++I+ K   + R+       R 
Sbjct: 167 YEVVEAVAEGLDNGEVAARLFMSEGTVRNHISAILAKLGLRNRTQVAVMYYRA 219


>gi|295098454|emb|CBK87544.1| Response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 205

 Score = 95.0 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 29/205 (14%)

Query: 44  SWTMRMYAL-TEYVGASHFLLVRWDL----FQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           S    + +     +G S                  LD  + +   FD+   +  S     
Sbjct: 17  SVVRLLESADIHALGFSSAEAFLSHPFEDLPSCVILDMQLPTITGFDVADALKDSG---- 72

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
               +    +F     T+P ++    G    + +   + + +   +              
Sbjct: 73  ----REIPIIFLTGHGTIPMSVRAIKGGAYEFLTKPVESSALIGSIESALR--------- 119

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                 LA + A   K +     +   LT RE E L     GK + +IA  LG+S  TV 
Sbjct: 120 ------LAQHNAARVKEHYALKQRHLSLTPREHEVLELAVSGKLNKQIAAELGVSEITVK 173

Query: 219 NYIASIMRKTATKTRSGAIAYAVRN 243
            +   +M K   ++ +  +  AV  
Sbjct: 174 VHRRRVMEKMQVRSVAELVR-AVER 197


>gi|229818787|ref|YP_002880313.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564700|gb|ACQ78551.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 203

 Score = 95.0 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 62/223 (27%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + +   G       R        LD  +  +  
Sbjct: 5   RLLLADDQALVRGALAALLDLEPDLDVVAQVGRGDEVLAAARAARCDVALLDVEMPGEDG 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A            R   L    F              + +        ++   
Sbjct: 65  IAAAASLAA--------GYPRCRSLIVTTFGRPGYLRRALDAGASGFVVKDTPADQLADA 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I  D       +                 D  LT RE + L   + G T 
Sbjct: 117 VRRVHAGLRVIDPDLAVASLTVG----------------DSPLTERERDVLLAAASGGTV 160

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A    +S  TV NY++S + KT  +TR+ A   A  +  +
Sbjct: 161 ADVARATHLSEGTVRNYLSSAIGKTGARTRAEAARLAQEHGWL 203


>gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score = 95.0 bits (235), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 21/217 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL---------LVRWDLFQEQKLDSIVSSDWPFDL 86
           ++ ++        +    E  G    L         L           D ++       L
Sbjct: 4   ILVIEDQPEMRRSLETTLEMEGFEVLLAEDGRMGLELALAARPDLILCDVMMPGMDGHGL 63

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ +    +  +   +      F        +  T      + Y +     + +   +  
Sbjct: 64  LQVLRADNRTAHLPFI------FLTARADKQDARTGMNLGADDYLTKPVAKSDLLAAIS- 116

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                  + R  + +  L                  +  L+ RE E L W+++GK++ +I
Sbjct: 117 -----SRLQRAEVQKRRLDGKRGEFKPDFSSPAIFANLGLSRREAEVLLWVAQGKSNGDI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           A ILG+S  TV  ++A I      ++R+ A+  A+ +
Sbjct: 172 ADILGLSEFTVKRHMAGIFDTLGVQSRNAAMLRALES 208


>gi|78049642|ref|YP_365817.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038072|emb|CAJ25817.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 205

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +A +       S    +  L               
Sbjct: 7   IRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRL--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 52  QPDVLVTDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 104 AGYLLKDAPAEQLVDALRQVHRGGRVIDPQLALDAWVEA-----------------DPLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 147 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 205


>gi|332716915|ref|YP_004444381.1| nodulation protein W [Agrobacterium sp. H13-3]
 gi|325063600|gb|ADY67290.1| nodulation protein W [Agrobacterium sp. H13-3]
          Length = 213

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 25/208 (12%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLL--VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
           +  V   + +    +   ++  LL     D      LD  +      D    +       
Sbjct: 29  EALVDLFLSIRTEAKSFESAQDLLENADLDRPGCILLDVRLPGANGLDFQLHLEKLGN-- 86

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
                 R   +F      +P  +         + +  F    I   + + F K R + + 
Sbjct: 87  ------RMPIIFMTGHGDIPMTVRAMKAGAIDFLTKPFRDQDILDAVSVAFQKDREMRQQ 140

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                                       LT RE E +T + +G  + +IA  LGIS  TV
Sbjct: 141 SAAN---------------GAVVELAKTLTRREHEVMTAVVQGLMNKQIAFNLGISEITV 185

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             +  ++MRK   ++ +  +  A    +
Sbjct: 186 KLHRGNVMRKMEARSVAELVRKAELLGL 213


>gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1]
          Length = 190

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 26/202 (12%)

Query: 46  TMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
              + A+ +   G+    L+  +      LD  +      D++  +              
Sbjct: 13  QDAVEAVLQAENGSQAIALLEKEPVDVVLLDIEMPEKTGLDVLEWVRGQALP-------- 64

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +    F              + Y      +A +   +  +    +    + +     
Sbjct: 65  VKVVIMTTFKRPGYFERAVKADVDAYVLKERSIADLMRTIETVLAGRKEYSPELM----- 119

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                       D+   +   LT  E + L  ++EG ++ EIA  L +S  TV NY+ SI
Sbjct: 120 ------------DILLTQRSPLTNLESQLLKLVAEGLSNKEIACQLHLSDGTVRNYMTSI 167

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
           + K   + R+ A+  A     +
Sbjct: 168 LSKLGAENRTAAVKVAQEKGWL 189


>gi|312867968|ref|ZP_07728172.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096372|gb|EFQ54612.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
          Length = 199

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 64/229 (27%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L +++ L         + A     G     L+         LD  
Sbjct: 1   MRLLVAEDQSMLRDALCQLLLL--QEDVEDVLQA---GDGQEAIHLLETHPVDIAILDIE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++                +   +    F              + Y      +
Sbjct: 56  MPIKTGLEVLEWAKRQR--------PQLKVVIVTTFKRPGYFERALKAGVDAYVLKERRI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +    +    + +  I                       L+ +E   L  +
Sbjct: 108 TDLMATLHAVLAGQKEYSPELMEGILT-----------------HPNPLSPQEQAVLKEV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  T+ NY+++I+ K   + R+ A   A     +
Sbjct: 151 AKGASNQEIADRLFLSNGTIRNYMSAILTKLNAENRTEAARIAQEKGWL 199


>gi|307294436|ref|ZP_07574280.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306880587|gb|EFN11804.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 219

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 14/213 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDL 86
           ++A++  +D    +   M       G       R      +  ++ + D ++        
Sbjct: 1   MMAQIAIVDDHPIFLDGMAQFLNSHGHDILFCARSVEEALERMEKAEPDLLILDVSMKSG 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                LS      + +     +F  V     + +       +       D   +   +  
Sbjct: 61  GGLAILSALRNGGSTVP---VIFMTVHIRPEQTLEAIKLGVDGVVLKDSDPNELLSCIQQ 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    + I    + +         +   +          LT RE+E    I  G  + EI
Sbjct: 118 VMGGNKSIAPFVMEQA------LVHSISAPANEANVLAALTDRELEIAGLIRAGLRNREI 171

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           A   G++  TV  ++ SI +K   K+RS  I  
Sbjct: 172 AGRCGLTEGTVKVHLHSIFQKLNIKSRSELIIM 204


>gi|261346515|ref|ZP_05974159.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
 gi|282565508|gb|EFB71043.1| nitrate/nitrite response regulator protein NarL [Providencia
           rustigianii DSM 4541]
          Length = 212

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 75/238 (31%), Gaps = 29/238 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           ++  I+L  +     + V  L +    L  +                    G +   +  
Sbjct: 3   EKSTILLIDDHPMLRNGVKQLISLEPSLQVIGEAGD---------------GKTGIQIAE 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +     F+ +  +   E             +   V +   + ++    
Sbjct: 48  EQDPDLILLDLNMPGMNGFETLDELRKRELS--------GRIILFTVSNYSDDLVSALKR 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y     +   + I L        ++         +LA    +     +        
Sbjct: 100 GADGYLLKDMEPEELIIALKEAASGKMVVSPTLT---SVLAESLRDHQTQSESDA---VA 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + L  I++G ++  IA  L I+ +TV  ++  +++K   K+R  A  + ++ 
Sbjct: 154 LTPRESDILELIAQGLSNKMIARNLDIAESTVKVHVKHLLKKLNLKSRVEAAVWVLQQ 211


>gi|188584046|ref|YP_001927491.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347544|gb|ACB82956.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 236

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 26/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     ++ + L  +     S V  L   +  +  +                    G   
Sbjct: 1   MGTAKTRIRVALIDDHPIFRSGVRGLLGETAGIEVVGEASD---------------GRHA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV         +D  ++      + R +  +              +F  V   L    
Sbjct: 46  LDLVHRTRPDVVVMDITMTGLSGLAVARALREAGS--------AAHIIFLTVNEDLAFVD 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              +     Y         +   +  +   GR I  +        A              
Sbjct: 98  EALSAGAQGYVLKRSAGTSLLEAIEAVVSGGRYIDAEMR---APPAPASRTEAGPPVPQP 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G++  LT RE E L  I+ G T  E+++ + IS  +V+ Y     +K   ++R+  + YA
Sbjct: 155 GEEGGLTAREREVLRLIALGLTMKEVSLAISISVASVDTYKIRGCKKLGLRSRASIVRYA 214

Query: 241 VRNNIV 246
           +    +
Sbjct: 215 LGQGWL 220


>gi|302525407|ref|ZP_07277749.1| predicted protein [Streptomyces sp. AA4]
 gi|302434302|gb|EFL06118.1| predicted protein [Streptomyces sp. AA4]
          Length = 217

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 25/233 (10%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R    +   +   P   D +AR++     +       ++        F +          
Sbjct: 9   RSGPIQVGVIEDHPLYRDAVARVLNEAPDIELGAVADSVAR------FAVQDQPKGSVVV 62

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +        V  +                 L        PE +         + S 
Sbjct: 63  LDLKLRGVQDAAAVLEVGQMGH----------KVLVVSAHAEQPEVLGAMQAGAKGFLSK 112

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             D   +   +  +      +       I            S + H G    L+ RE + 
Sbjct: 113 DVDGDELLRAIRTIAEDNAYVSPTLAGMIIQ---------DSDERHAGPKIVLSEREKQV 163

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G+   ++A IL IS  TV +Y+  I  KT  + R+G +  A+R  ++
Sbjct: 164 LRLVAAGERDVDVAEILDISVRTVRSYLDRIRDKTGERRRAGFVRVAIREGLL 216


>gi|58450217|gb|AAW78422.1| transcriptional regulator luxR/uhpA family [Xanthomonas oryzae pv.
           oryzicola]
          Length = 215

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 67/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + ++   +  +   +   +   ++  L               
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDVCVVGEAESGEAALPQIRQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +   +      ++    +   P           P    
Sbjct: 48  KPDIVLCDLHLPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLPEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L      +  +     +     L+
Sbjct: 100 SGYVGKGGDAHELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E     ++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 151 PRELEVALLWTQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 208


>gi|28871293|ref|NP_793912.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|66047117|ref|YP_236958.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|213970871|ref|ZP_03398994.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|257486630|ref|ZP_05640671.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289650462|ref|ZP_06481805.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|289676759|ref|ZP_06497649.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
 gi|298488740|ref|ZP_07006769.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302059914|ref|ZP_07251455.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           K40]
 gi|302130513|ref|ZP_07256503.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|302184715|ref|ZP_07261388.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
 gi|28854543|gb|AAO57607.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|63257824|gb|AAY38920.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
 gi|213924394|gb|EEB57966.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|298156813|gb|EFH97904.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330877330|gb|EGH11479.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330889570|gb|EGH22231.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330898580|gb|EGH29999.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330937554|gb|EGH41495.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330949995|gb|EGH50255.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
 gi|330966557|gb|EGH66817.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|330973098|gb|EGH73164.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330981561|gb|EGH79664.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
 gi|331015675|gb|EGH95731.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 208

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     L R  L     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVIAETDNGVDALQLAREHLPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  ++                   P   +    +         Y     D+  +  
Sbjct: 61  GLEVIARLSA----MTLPFKVLILTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L        +                 L+GRE+  L  ++ GKT
Sbjct: 113 AIKAVLSGYSYFPNQAL--------HTVRSSMGNASESDMVDRLSGREMMVLQQLARGKT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K    +    I  A RN +V
Sbjct: 165 NKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGLV 208


>gi|213966524|ref|ZP_03394689.1| two-component system response regulator TcsR2 [Corynebacterium
           amycolatum SK46]
 gi|213950834|gb|EEB62251.1| two-component system response regulator TcsR2 [Corynebacterium
           amycolatum SK46]
          Length = 198

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 67/220 (30%), Gaps = 28/220 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ------EQKLDSIVSSDWPFDL 86
           + R++  D        + AL E       +    D  +      EQ +D  +       L
Sbjct: 1   MIRVLIADDQHLVRGALKALLETEPDLDIVAEAADGIETTQKVTEQDVDVALIDIEMPRL 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                 +  D    +      L    F              + + +      ++   +  
Sbjct: 61  ------NGIDTIAKISDHCRCLVVTTFARPGYLKRALQAGASGFLAKDTPPEQLAEAIRR 114

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R+I           A                D  LT REVE    I +G  +  I
Sbjct: 115 IHSDLRVIDPALAEASLFTA----------------DSPLTDREVEIARLILQGADTGTI 158

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L I++ TV N ++SI+ KT T  R  A   A  N  +
Sbjct: 159 AGQLFIAKGTVRNQVSSIITKTNTSNRVEAAKTARDNGWL 198


>gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
 gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           RS9916]
          Length = 227

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-----ELTGREVE 192
                G+M +    + +  D +  +  +A       K      G +      +LT RE+E
Sbjct: 115 EAFVEGVMFVSSLAKGVDGDFIRSLAAIADGGNYYPKEVKAVAGYEAFEVLPDLTDREME 174

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  +S G ++ EI+  L IS  TV +++++I+ K   K R+ A+  A+R  I
Sbjct: 175 VLKVLSSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAGI 227


>gi|88807455|ref|ZP_01122967.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88788669|gb|EAR19824.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 261

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 10/182 (5%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q      ++ +D          +         L+    L  P+  T+ + I     
Sbjct: 79  LGNIQSHAASLLLCTDLLESGSGISLVRRALAVQPELKALILLRRPIARTILDAIE---A 135

Query: 126 MDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             +  C++ +     +   L  +   G+ +       +        +   S         
Sbjct: 136 GCHGICAVQSAGTGAVATALTAIDSDGQYLDPVISGVLH------HSRLSSSGGQQLPLQ 189

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  +  G T+ EIA  L +S  TV ++++S++RK   K R+ A+  A R  
Sbjct: 190 DLTMREEDVLRGLCRGMTNLEIAEDLLVSIETVKSHVSSLLRKLPAKDRTAAVVTAFREG 249

Query: 245 IV 246
           +V
Sbjct: 250 LV 251


>gi|53726081|ref|YP_103403.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121601196|ref|YP_992504.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124385129|ref|YP_001026695.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126450323|ref|YP_001080022.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|167000332|ref|ZP_02266150.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254175606|ref|ZP_04882266.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254202076|ref|ZP_04908439.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254207407|ref|ZP_04913757.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254359829|ref|ZP_04976099.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52429504|gb|AAU50097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121230006|gb|ABM52524.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124293149|gb|ABN02418.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126243193|gb|ABO06286.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147746323|gb|EDK53400.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147751301|gb|EDK58368.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029069|gb|EDK86974.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|160696650|gb|EDP86620.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|243063667|gb|EES45853.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 279

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 33/242 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D   R    +    W  +   L +       ++      
Sbjct: 4   LVLNS-DAERRDGLKTLLRQID---RHAGYNDAKDW-RQAQRLIKQQSFDLIVV------ 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                          D      L +                    +              
Sbjct: 53  ---------------DWQDIKRLGDLHALCQACAPTPVAALVDDASPVHAQALFEAGVLG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---- 185
             S T     I   L ++   G  +    L      A  +    ++      +       
Sbjct: 98  VISRTTRPHLIVRTLEMVLLGGHYVPPSALNLTEPAARARDGRVEAIVSQLPRRKRSPCS 157

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 158 LLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 215

Query: 245 IV 246
            +
Sbjct: 216 WL 217


>gi|331677003|ref|ZP_08377699.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           H591]
 gi|331075692|gb|EGI46990.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           H591]
          Length = 254

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 42  QEPATILLIDDHPMLRTGVKQLISMAPAITVVGEASN---------------GEQGIELA 86

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 87  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 138

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 139 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 191

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 192 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 251

Query: 244 NI 245
            I
Sbjct: 252 RI 253


>gi|330807848|ref|YP_004352310.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375956|gb|AEA67306.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 217

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 68/231 (29%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    +        R+  +       +++ A  ++             
Sbjct: 6   ILIADDHPLFRSALHQAVTLGLGPAVRLTEVASIAELEVQLTAKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEASVMVKAREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +              +        ++ +           LT 
Sbjct: 104 GFIPKSSSLEMIQKAVKAVLDGDVCWPPQAFEAV--------SVSEEAKAASEGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELNVSEATIKAHVTAIFRKLNVRTRTQAALL 206


>gi|258591000|emb|CBE67295.1| Two component transcriptional regulator, LuxR family [NC10
           bacterium 'Dutch sediment']
          Length = 216

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 26/233 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  +++++  +       +  L    +    ++    +        AL            
Sbjct: 1   MDLISVIIADDHTLSREGL-RLLLAQEPTISVVGAADSDQAISMAEAL------------ 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D ++ +    +L    ALS   K            CP             
Sbjct: 48  --------QPDIVLLAVNIQELSALNALSLIRKKSPRTDVLILSGCP---DDELMSAALQ 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y S       +   + ++        R  L   G+L + +    ++         
Sbjct: 97  LGAKGYVSKMLSHKDLVKAIRVVHAGEIWAGRKVLA--GVLESLRHKTHETNRSFSETQE 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT RE E + W+ +G T+ EIA  L IS  TV  ++++I  K     R    
Sbjct: 155 ALTDREQEIVGWVIQGMTNKEIAARLEISDKTVKAHLSNIFSKLKISRRLELA 207


>gi|325679856|ref|ZP_08159425.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108294|gb|EGC02541.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 208

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 15/210 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ-----EQKLDSIVSSDWPFDLVRC 89
           R+I  D      + +  + E  G      +     +     EQ    ++  D   + +  
Sbjct: 2   RIIVTDDDKLVALSLKTILESTGRITVEAMAGGGEEAIGLYEQLKPDVMLMDIRMEGMTG 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +   E  K          L+   F+     +   +     Y     D   I   L  +  
Sbjct: 62  LEAGE--KILAAHPDAKILYLTTFNDDEYIVKALSMGAKGYMLK-QDFEGIAAALEAVAN 118

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              +     +  +  L   +     +      K       E + +  ++ G ++ EIA  
Sbjct: 119 GQSVFGEKIVSRLPELMTRREEFDFAAHGISDK-------ERDIMEAVASGLSNKEIAAE 171

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L +   TV NYI++++ K   + R+    Y
Sbjct: 172 LFLGEGTVRNYISNLLDKLGLRDRTQLAVY 201


>gi|296128681|ref|YP_003635931.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296020496|gb|ADG73732.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 229

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 62/244 (25%), Gaps = 24/244 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E   V +VL  ++      +  +      +  +                    G   
Sbjct: 8   MQAERTTVRVVLVDDETLVRVGLRLILGADPAIEVVGEAAD---------------GVEA 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             ++         +D  +           +  ++ D           +    F T    +
Sbjct: 53  LDVIAATSPDVVLMDIRMPRLDGLGATERLLAAQPD--------ARVVILTTFDTDEMVL 104

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +       A I   ++        +       +      +    +      
Sbjct: 105 GALRLGAAGFLLKDTPPAEIVRHVLDAGAGRTTLSPSVTDRLVASVTQRPRDERRTAARR 164

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  ELT RE +    I  G ++ EIA  L I+  TV  +I+ I+ +     R+      
Sbjct: 165 -RLDELTERERDVARAIGRGLSNAEIASELFITVATVKTHISRILEQMPADNRTHIAICV 223

Query: 241 VRNN 244
               
Sbjct: 224 HEAG 227


>gi|239820229|ref|YP_002947414.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
 gi|239805082|gb|ACS22148.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 255

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 62/264 (23%), Gaps = 48/264 (18%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ +++  +       ++ L   +  +  +      V        L            
Sbjct: 15  APKIRVLIADDQALIRRGMAMLLDAAPDIEVLGQAADGVEAVELARRL------------ 62

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D ++           +A  E       L     +    F           
Sbjct: 63  --------LPDVVLMDLHMPRKGGVLATRE---ISAALPHTRVMVLTTFDRDDLVFDAVR 111

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +      +      ++       A+             
Sbjct: 112 AGAQAYLLKDASEEEVLDTVRAVHRGESRLTPQIARKVMDQFRLLADRVAQEPPSPPAPD 171

Query: 185 -------------------------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                                     LT RE   L  I++G  + +IA  L ++  T  N
Sbjct: 172 PRAAAQAAAPGEPSPSDSMMTMATKPLTEREAAVLELIAKGYGNRQIATALNLAEGTAKN 231

Query: 220 YIASIMRKTATKTRSGAIAYAVRN 243
           +++ IM+K    TR+      ++ 
Sbjct: 232 HVSRIMQKLHANTRTELAVLVLKK 255


>gi|256389903|ref|YP_003111467.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356129|gb|ACU69626.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 190

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 56/212 (26%), Gaps = 26/212 (12%)

Query: 37  IPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSD-WPFDLVRCMALSE 94
             L   +     +  + +   G                LD  +       +    +    
Sbjct: 3   GALAALLELEPDLRVVAQTATGDEVVPQALVFAPDVALLDIDMPGTIDGLEAAARLKEQ- 61

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
                  L     L                   + +   T     +   +  +   GR++
Sbjct: 62  -------LPTCRTLMLTSNGRPGMLRRALEAKVDGFLLKTAPPEELTAAIRTVAAGGRVL 114

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                     LA                +  LT RE + L  ++ G    EIA  L +S 
Sbjct: 115 DPTLAVTAWDLA----------------ENPLTPRERDVLRELAGGAEPPEIAATLHLST 158

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            TV N + +I+ K   + R+ A+  A     V
Sbjct: 159 GTVRNVLTAIVGKLNARNRTDAVRIARDAGWV 190


>gi|1825466|gb|AAD12185.1| utilizing regulatory protein tutB [Thauera aromatica]
          Length = 218

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 72/249 (28%), Gaps = 43/249 (17%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   I    + L  +D      +S L       +  + ++   S +  +           
Sbjct: 1   MCPTIDASTVYLVDDDRSMRDAISSLVR-----SVGLNVETFASASEFLEH--------- 46

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
               R +      LD  +     FDL   ++ +  D    ++      F      +P  +
Sbjct: 47  ---ARSEACACLVLDVRMPRMSGFDLQHALSKNGVDI--PII------FITGHGDIPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F    +   +                    +           D   
Sbjct: 96  RAIKSGALEFLPKPFRAEELLEAINRALN---------------IDQEAREYKAELDKIL 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   LT RE E    I++G  + +IA  LGI+  T+  +  +I RK   +T +  +   
Sbjct: 141 KKYEGLTDREKEVFPLIAQGLLNKQIAGYLGITEVTIKVHRHNITRKMGVRTLANLVRLY 200

Query: 241 VRN---NIV 246
            +     ++
Sbjct: 201 EKLKNAGLI 209


>gi|270313641|gb|ACZ73896.1| FixJ [Azospirillum brasilense]
          Length = 230

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--------HFLLVRWD-LFQ 70
           +  +  +P        +  LD   +    +  L E  G           FL         
Sbjct: 5   SPLLPDIPPSD---MTVFVLDDDEAVRDSVVILLECEGFRVESFASPLAFLDSDAPSRPG 61

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D+   +            +    +       +P  +         +
Sbjct: 62  CLLVDVRMPQMSGLDVQERLVQEG--------RGLPVIVMTGHADVPLAVRAMKAGAIDF 113

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
               FD   +   +     +          +    A     +         +   LT RE
Sbjct: 114 VEKPFDEQALIGSVKAALARAVPPTAAPAAQAPAPAPAAPAVSPE---VMERLSSLTPRE 170

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L W+ EGK++  IA  L IS  TV  + A +M K    +    +  A+   I
Sbjct: 171 RDVLQWLVEGKSNKVIAFELSISPRTVEIHRARVMEKMRADSLPSLVRMALAAGI 225


>gi|146306979|ref|YP_001187444.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145575180|gb|ABP84712.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 216

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +        + L        ++           R+                 +
Sbjct: 1   MKILLVDDHAVVRQGYASLLRALLPEVQLREACDGEQALQRVQE---------------E 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +      +  R +           L +   LF  +   LP          
Sbjct: 46  IPNLVIMDIGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +         I          LA   A      D    +  ELT
Sbjct: 98  IGYLTKNSSPEVLVEAVKRTAAGHAYIE-------QPLATQLACNPAGSDGLDPRLRELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++ G    +IA  L IS  T++NY   +  K    +++  +  A+ + +V
Sbjct: 151 QREFEIFVMLARGLPPRQIAEKLCISAKTLSNYQTLVKSKLQIASQAELVHLAIDSGVV 209


>gi|28975412|gb|AAO61802.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus]
 gi|328469240|gb|EGF40186.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 223

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 165 LAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            A       + +     K+    LT RE + +T++S G ++ +IA  L +S NTV  ++ 
Sbjct: 134 FAQQYITHLRRHSRPINKNVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLH 193

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           +I +K   K R  A+ +A  N
Sbjct: 194 NIFKKIDVKNRVQALIWAKEN 214


>gi|15967032|ref|NP_387385.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15076305|emb|CAC47858.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
          Length = 184

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 24/175 (13%)

Query: 95  KDKYYNVLQRPTELFCPVFHTL----------------PENITPPAGMDNRYCSLTFDVA 138
                  ++                                     G+ + Y        
Sbjct: 10  YVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPVHGRR 69

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH-------WGKDFELTGREV 191
            +   L  +  +   +    L     +A                       + ++T RE+
Sbjct: 70  GLMGNL-TVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREM 128

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L ++++G TS++I  +L IS +TV+ Y+  I  K   K R   +A A R  ++
Sbjct: 129 EALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLI 183


>gi|94310139|ref|YP_583349.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93353991|gb|ABF08080.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 210

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 69/236 (29%), Gaps = 40/236 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R                      AS         
Sbjct: 14  TVFIVDDDEAMRDSLTWLLEGNGYQVR---------SFNSAEQFLSAYDASQV------- 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   M     D    ++      F      +P  ++       
Sbjct: 58  -SCLILDVRMPGMSGPELQERMIAENIDI--PIV------FITGHGDVPMAVSTMKRGAI 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +                 +   A    +  +          +LT 
Sbjct: 109 DFIEKPFDESELRSLV---------------ERMLQKARTDHSAAREQRAAKDLLSKLTT 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  N
Sbjct: 154 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSRN 209


>gi|295837248|ref|ZP_06824181.1| two component system response regulator [Streptomyces sp. SPB74]
 gi|295826422|gb|EFG64839.1| two component system response regulator [Streptomyces sp. SPB74]
          Length = 236

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 62/239 (25%), Gaps = 25/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++      V+ +   +  +                       G         
Sbjct: 17  PVRVLLADDERLVREGVAAILASAPGIEVAGQAGD---------------GREAVAEGLR 61

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +            A          L          F          AG 
Sbjct: 62  LRPDVALLDVRMPVLDGLGAAGEFARL--------LPATAVGMLTTFSEGEYVERALAGG 113

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D   +  G+  L   G  +         +L        +           L
Sbjct: 114 AAGFLLKSGDPYELIAGVRALAAGGAFLAPRVTR--HVLDGLGGRRLERAAGARRAVARL 171

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  ++ G ++  IA  LG+S  TV  Y++ ++ + A   R  A   A    +
Sbjct: 172 TPREREVLAGLAAGLSNAGIARRLGLSEATVKAYVSVVLDRLAVPNRVRAAVLAHEAGL 230


>gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 213

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 19/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           V  L    D       L   +               +        L      D ++    
Sbjct: 7   VIRLLLADDHPVVRAGLRAVLDTEPDFRVAG----EAATAEEAVALAAAGGFDVVLMDLQ 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
               +     +          R        + +  + +       + Y         +  
Sbjct: 63  FGAGLHGSEATATITAAPDGPRVL--ILTTYDSDADILAAVEAGASGYLLKDAPPQELAA 120

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +         +       +              D        LT RE+E L  + EG +
Sbjct: 121 AVRTAAAGRSALAPSVAHRL-------------MDRMRTPAEALTRRELEVLQLVGEGLS 167

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  I+  L +S+ TV +++  I  K    +R+ A+A A    ++
Sbjct: 168 NLRISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211


>gi|319783151|ref|YP_004142627.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169039|gb|ADV12577.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 18/223 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   +   P   + L   + +      T+   ++TE +     LL     F    LD
Sbjct: 9   DRARFLIIDDHPLFREALHSAVQMAYPEVDTVEARSITEALD----LLADAKPFDLALLD 64

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +     FD +      +    Y  L          +          +     +   + 
Sbjct: 65  LSMPDVHGFDGL-----LQLRTRYPRLPVVIVSG---YEEPKIISEALSYGAAGFIPKSA 116

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             + +   +  +      +                           +   LT +++  L 
Sbjct: 117 RKSDLAAAIRSVMEGAIYVPETYEGRP------PDADSADRADMVQRLSTLTPQQLRVLQ 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +G  + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 171 MLRQGLLNKQIAYELQVGETTVKAHVSEILRKLNVYSRTQAVI 213


>gi|331641755|ref|ZP_08342890.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           H736]
 gi|331646541|ref|ZP_08347644.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           M605]
 gi|331652262|ref|ZP_08353281.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           M718]
 gi|332279588|ref|ZP_08392001.1| two-component system response regulatory system [Shigella sp. D9]
 gi|581138|emb|CAA33023.1| narL [Escherichia coli]
 gi|331038553|gb|EGI10773.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           H736]
 gi|331045293|gb|EGI17420.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           M605]
 gi|331050540|gb|EGI22598.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           M718]
 gi|332101940|gb|EGJ05286.1| two-component system response regulatory system [Shigella sp. D9]
          Length = 254

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 42  QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 86

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 87  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 138

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 139 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 191

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 192 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 251

Query: 244 NI 245
            I
Sbjct: 252 RI 253


>gi|315655500|ref|ZP_07908399.1| LuxR family DNA-binding response regulator [Mobiluncus curtisii
           ATCC 51333]
 gi|315490155|gb|EFU79781.1| LuxR family DNA-binding response regulator [Mobiluncus curtisii
           ATCC 51333]
          Length = 220

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 36/236 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+ ++ +++  + E     ++ +  R+  L  +           R               
Sbjct: 3   ELSEIRVMIVDDHEIVRRGIAEIVDRAADLQVVAEAGSVAEALSRAE------------- 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      DL+R + +        +      +    F          
Sbjct: 50  --LANPNVVLVDLQLPDGTGIDLIRQLRV--------MTPNARMIVLTSFDDDEALAESL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   T     I   +  +     ++    +              ++     G  
Sbjct: 100 EVGAAAYLLKTVAGVEITNVIKAVAAGRTLLDERTVT-------------RTSANRSGPT 146

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT  E + L  I +G ++ EI   LG++  TV N+I +++ K   + R+   A+
Sbjct: 147 EHLTPTEKKILGLIGDGLSNREIGDTLGVAEKTVKNHITALLSKMGLQRRTQVAAW 202


>gi|59713015|ref|YP_205791.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio
           fischeri ES114]
 gi|59481116|gb|AAW86903.1| DNA-binding transcriptional activator VpsT (CsgD-like) [Vibrio
           fischeri ES114]
          Length = 214

 Score = 95.0 bits (235), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           ++       +  +        LT RE E L  ++ G ++ +IA  L +S NTV  ++ ++
Sbjct: 129 ISELIFTYREKQNAILSTSISLTTRESEILRLLASGASNLDIANSLFVSENTVKTHLYNV 188

Query: 225 MRKTATKTRSGAIAYA 240
            +K   K R  A+ +A
Sbjct: 189 FKKLNVKNRLQAMMWA 204


>gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri
           DSM 4166]
          Length = 222

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 17/222 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           + + +     V  +P   D LA +        +      L    G+S    ++       
Sbjct: 6   HPQSQGVVMIVDDVP---DNLALLSGALDQAGYM----VLVALDGSSALERMQRLKPDIV 58

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD+++     F+  R +      +   VL      F          +         Y +
Sbjct: 59  LLDAMMPGLDGFETCRRIKAQPMLEDVPVL------FMTALTESEHVLEGFEAGGIDYVT 112

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 ++     +                   A       K       + F+LTGREVE
Sbjct: 113 KPIHTEQVLA--RVAAHLRTARALQNARRNATQAPPVDE--KQIQAMLSQRFQLTGREVE 168

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            L W+S GKT+ +I  ILG+S  TVN ++  +  K   +TR+
Sbjct: 169 VLHWVSCGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRT 210


>gi|304406993|ref|ZP_07388647.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304343980|gb|EFM09820.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 200

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +S L    D +  +   +                G     LV   
Sbjct: 1   MKVVIAEDQGMLRGALSALLDLEDDIEVIGQAEN---------------GEQALALVLSL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +   +             +    F              
Sbjct: 46  SPDICLLDIEMPLLSGLDVAERLFSLKHP--------CKVVILTTFSRAGYFQRAMRSGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +      +  +   L  +   GR +  +    +                 W     LT
Sbjct: 98  CGFLLKDSPIDELGAALRKVNAGGRAVSAELAVSL-----------------WEAGNPLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L + SEG ++ EIA  + ++  TV NY++  +RK   K R  AI+ A     +
Sbjct: 141 EREQEVLRYASEGLSAREIAARVHLTAGTVRNYMSESIRKLEAKNRIDAISIATHKGWL 199


>gi|290960916|ref|YP_003492098.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650442|emb|CBG73558.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 210

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ ++  +    ++       G +              LD  
Sbjct: 11  LRVLLAEDQGMMRGALALLLGMEPDILVVAQVGT-----GDAIVDAALIHRPHVALLDIE 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +           +     L    F                +      V
Sbjct: 66  LPGMSGLDAAAALRDQ--------VPDCRVLILTTFGRPGYLRRAMDAGAAGFLVKDGPV 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++                               LT RE + L   
Sbjct: 118 EELAQAIRRVLTGETVVDPALAAAALSAG----------------PNPLTDRERDTLNAS 161

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T  +IA  L +S +TV N+++S + KT T+ R  A+  A +   +
Sbjct: 162 ADGATVADIAARLHLSESTVRNHLSSAIGKTGTRNRMEAMREARQQGWL 210


>gi|229524681|ref|ZP_04414086.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
 gi|229338262|gb|EEO03279.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis
           VL426]
          Length = 209

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S      +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPSANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L +      +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHLLVD-----GFVGNDLAE------KVAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|161519735|ref|YP_001583162.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189354086|ref|YP_001949713.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|221197639|ref|ZP_03570686.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
 gi|221204312|ref|ZP_03577330.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|160343785|gb|ABX16870.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189338108|dbj|BAG47177.1| two-component system nitrate/nitrite response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|221176478|gb|EEE08907.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2]
 gi|221184193|gb|EEE16593.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD2M]
          Length = 214

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 60/227 (26%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +                  VG +        L  E + D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAAD-----------LSVVGEAGNADEALALAAELEPDL 58

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       +          + +  ++            +           + Y      
Sbjct: 59  ALMDVGMNGMNGIALAGVFHERFPAIRVLMLSM---HDNVEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASAAASPLDRLTPRERDILDA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|77163811|ref|YP_342336.1| two component transcription LuxR family regulatory protein
           [Nitrosococcus oceani ATCC 19707]
 gi|76882125|gb|ABA56806.1| two component transcription regulatory protein, LuxR family
           [Nitrosococcus oceani ATCC 19707]
          Length = 224

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR----WD 67
           +NR ++   S   H  ++ +  AR+  ++        +  +    G             D
Sbjct: 1   MNRMNQCFPSAHDHSGSQHNFEARVFIVNSDEKTHSSLCRMIASAGWRTKSYFSAESFLD 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F       ++  +   ++       E     ++               PE +    G  
Sbjct: 61  KFDPAHPGCLLLDNHVSEMGGLSLQQELRDRNSLTPVLFTSSQGTV---PEAVEAIHGGA 117

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +                   + +L   + E    + Y     K  +    +   LT
Sbjct: 118 VNFFTRPL---------------EKPLLMKCIRESIEKSQYLREEQKEREEIIIRMMRLT 162

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            RE E +  + +G+ +  IA  L IS  TV  +   +M+K   +T++  I  A+
Sbjct: 163 PREREVMALVLKGQPNKLIASDLDISIKTVEIHRGQVMKKLQVRTQADLIHLAL 216


>gi|329947033|ref|ZP_08294445.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526844|gb|EGF53857.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 219

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 36/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  + E     ++ +  R+D L  +           R                   
Sbjct: 12  VRVMIVDDHEIVRRGIAEIIDRADGLDVVAEAGSRAEAVRRAE---------------LV 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L++ +  S        + +   +    F          A   
Sbjct: 57  RPDVILVDLQLPDGTGIELMQELRES--------VPQALPIVLTSFDDDEALAEALAAGA 108

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +  +     ++    +              +    H     +LT
Sbjct: 109 RAYLLKTVHGAEISDVVRAVASGRVLLDERTVT-------------RRRADHDDPTADLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 156 NAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 207


>gi|91775169|ref|YP_544925.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91709156|gb|ABE49084.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 212

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 58/224 (25%), Gaps = 17/224 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V  +    D       L   +             G     L +        LD  +   
Sbjct: 1   MVQRILLADDHAVVRSGLRILLENAGYQVIAEAESGERACTLWQEHHPDLGILDLDMPGI 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +   +        +    +   + +               Y   T     + 
Sbjct: 61  GGLETLHRIIARD--------RNARLIIFSMHNDNIYAARSMQAGARGYVVKTDAPEILL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   GR I  +    + +           +        +L+ RE E    I+EG 
Sbjct: 113 EAVKQVLRGGRYIGHELAQHLAM---------DRFSPSENPLEKLSPREFEVFRRIAEGI 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +   IA  L I   T  N    + +K   +T    +  A+R  I
Sbjct: 164 SLSGIAEELHIGYKTAANIQTQVRQKLNVQTTGQLVHIAIRFGI 207


>gi|325277013|ref|ZP_08142678.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
 gi|324097849|gb|EGB96030.1| two component LuxR family transcriptional regulator [Pseudomonas
           sp. TJI-51]
          Length = 216

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 59/213 (27%), Gaps = 19/213 (8%)

Query: 35  RMIPLDCTVSWTMRMYALT--------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
            ++  D    +   +              V  +    +   L ++   D ++        
Sbjct: 5   EILIADDHPLFRGALRQAVTLGLGPDVRLVEVASIAELEVRLSEKADWDLVLLDLNMPGA 64

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                L      Y  +                 +       + +   +  +  I+  +  
Sbjct: 65  YGFSGLVLLRGQYPQIPVVMVSAQ---EEAAVVVKSREFGASGFIPKSSPLEVIQDAVRK 121

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +             ++        ++             LT ++   LT + EG  + +I
Sbjct: 122 VLDGEVWWPPQAFEKV--------DVSAEAKAASEGLASLTPQQFRVLTMVCEGLLNKQI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           A  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 174 AYELNVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|300715237|ref|YP_003740040.1| two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
 gi|299061073|emb|CAX58180.1| Two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
          Length = 206

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ---------KLDSIVSSDWPFDLVRC 89
           +D   S T  +  L              D F             +D  +     F +   
Sbjct: 8   VDDDESVTTALTNLLSSQNYDVAAFSSPDAFLAHPFYPSPCCLIVDINMPGTDGFGVASA 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +                 +F   F T+P  +         + +   D  R+   +     
Sbjct: 68  LMERGYSI--------PTIFLTSFGTIPVTVRAMKAGAFEFLTKPVDPERLLQAVEEALR 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                +     ++ L A +                 LT RE E +     G  + +IA  
Sbjct: 120 ISEDGMASSQQKLELTARH---------------HSLTPREGEVMLLAIGGLQNKQIAAE 164

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +GIS  T   +   +M K   ++ S  +  A R NI
Sbjct: 165 MGISEITAKVHKRRVMEKMQVRSLSDLVRAAERLNI 200


>gi|224552987|gb|ACN54744.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH------ 114
           +     +     ++  I   +   +        +      V+ R                
Sbjct: 11  YAYAIMNKKDPSQMQII---NNNPEWFDVYLERKYQFIDPVIIRGLRCVEDYSWENKVIL 67

Query: 115 TLPENITPPAGMDNRY------CSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAA 167
           +   N+T       +Y           D     + L ++  K      ++  E       
Sbjct: 68  SEGYNLTRIFNESIQYNIYQGRTFPLHDYLNNLVLLSVISQKDSDFNIEKYREKFISFLT 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE + L W+S GKT  E+++IL I+  TV  ++ ++M
Sbjct: 128 NLHQKTLNLYSQHNQKKNVFLSPRERQILKWVSAGKTYAEVSIILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K        A+       ++
Sbjct: 188 KKLGVNNARHAVKLGAELQLL 208


>gi|222082949|ref|YP_002542314.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727628|gb|ACM30717.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 219

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 64/220 (29%), Gaps = 12/220 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D       L   +S    +  + E   G +   LVR        LD  +       
Sbjct: 8   IIADDHAIVREGLKLLISAMTNVSIVAEAANGDTLLDLVRSTRADLLILDLGMPGVAGIQ 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +             R   L                   N Y +   D   +   + 
Sbjct: 68  FISDIRALA--------PRMKILVLTANIEPRTVRAALDAGANGYLTKDGDPEELDTAID 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      + +   + +                       LT RE + L   ++G+TS +
Sbjct: 120 AVKSGKTYLAKSIRFAVADPERLG---KMPVTGEIVSPIPLTLRERQVLLLSAQGQTSRQ 176

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +A  LGIS  T   +  ++MRK    + +   AYAVR  +
Sbjct: 177 MAERLGISPLTARKHRENLMRKLNLHSTAEVTAYAVRLGL 216


>gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 391

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 123 PAGMDNRYCSLTFDVARIR---IGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------ 173
           P G+ +      +     R     ++   P     +  RL+   +     A         
Sbjct: 258 PFGLASLVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIK 317

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G    L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R
Sbjct: 318 APKKEWEGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNR 377

Query: 234 SGAIAYAVRNNIV 246
           + A+A A+R  ++
Sbjct: 378 TEAVAKALRLGLI 390


>gi|330984843|gb|EGH82946.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 208

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 26/221 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSSDWPFD 85
           ++ +D      + +  L E  G               L R  L     LD  +      +
Sbjct: 4   VLIVDDHPVIRLAVRMLMERHGYDVIAETDNGVDALQLAREHLPDIVILDIGIPKLDGLE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  ++                   P   +    +         Y     D+  +   + 
Sbjct: 64  VIARLSA----MTLPFKVLILTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLSAIK 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +           L        +                 L+GRE+  L  ++ GKT+ E
Sbjct: 116 AVLSGYSYFPNQAL--------HTVRSSMGNASESDMVDRLSGREMMVLQQLARGKTNKE 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  + +S  TV+ Y   ++ K    +    I  A RN +V
Sbjct: 168 IADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGLV 208


>gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047]
 gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047]
          Length = 199

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + E     +     +      +                        F L    
Sbjct: 2   IKIAIIDDHELVLQGLYDRLKKETHFEVVGAFTSYQDLL--------------FCLKYK- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++     FDL+  +           +     +    F+    +        
Sbjct: 47  SVDVLIIDLMLKDIHGFDLIAQIQQK-----CQTVP--KMILISGFYEPLLHKRALDLGI 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    ++I  D L                      +   LT
Sbjct: 100 KAFLPKECSYDELISTVYNVAKGNQVIPDDLLQR-------------------EESHLLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A+R  ++
Sbjct: 141 ESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIRLKLI 199


>gi|157962375|ref|YP_001502409.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157847375|gb|ABV87874.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 219

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 72/241 (29%), Gaps = 30/241 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + +NI++  +     + +    +      +    D   +  + +             
Sbjct: 1   MKPENLNIIIADDHPLFRNALRQALSSEFKNTQWFEADSADALQVLLEN----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                 +    LD  +           + L    +   V+                    
Sbjct: 50  --SDIEYDVVLLDLQMPGSHG--YSTLIHLRTHFQDLPVV------VISAHEDSLTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  +   L  +      + +    E+  +     N          K
Sbjct: 100 IHYGSSGFIPKSSSMETLAEALEAVLFGDVWLPQGV--ELQEIDEDDTNQMA------SK 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+  A++
Sbjct: 152 LADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV-IALQ 210

Query: 243 N 243
            
Sbjct: 211 Q 211


>gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl]
          Length = 487

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +++ RE E L  ++ G T+ +IA+ L IS NTV  ++ +I  K   ++R+ A  YA+R
Sbjct: 4   ESQISEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYAIR 63

Query: 243 NNIV 246
           N IV
Sbjct: 64  NGIV 67


>gi|297157233|gb|ADI06945.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 259

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 55/219 (25%), Gaps = 25/219 (11%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V         +  ++  + T+             G +   LV   +     +D
Sbjct: 11  DRIRVVVVDDHTVMRAGVVALLTAEPTIEIVGEADN-----GRAGVDLVERLVPDMALVD 65

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +           +                 L    + T  E           Y     
Sbjct: 66  LRMPVLDGVAATAEIVALPVP--------TRVLILTTYDTDAEIERAVEAGAVGYLLKDT 117

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
              ++   +        ++           A       +  +        LT RE + L 
Sbjct: 118 TRQQLADAIRSAARGETVLAPKV-------AERLVARMRRPEPVA-----LTARERDVLH 165

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            +++G ++ EI   L I   TV  ++  +  K     R+
Sbjct: 166 AVADGLSNAEIGRRLVIGEATVKTHLLRVFAKLDVSDRA 204


>gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
 gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Pantoea sp. At-9b]
          Length = 241

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-------------PENIT 121
           + +V S             +  +   V+        P+                    + 
Sbjct: 41  EIVVISSISKYFDEVYLAKKHQRIDPVIINALNRVSPIIWDENLMINSQWTINKIFNAVK 100

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQANMFK-- 174
           P   + +    +  D     + L L   K  ++  +        ++  L      M    
Sbjct: 101 PFYNIVSGQTFVLHDYNNNLVLLSLYINKYLMVDVNEKATKDRHDLQGLLIDTHEMMLHL 160

Query: 175 ---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                + H  ++  L+ RE E L W S GKT  EIA +L I+ +TV  ++  I++K    
Sbjct: 161 YRDESERHKSEENMLSSRENEILYWSSTGKTYPEIAHMLNITVSTVKFHMGKIVKKMGVN 220

Query: 232 TRSGAIAYAVRNNIV 246
               AI+ A+  NI+
Sbjct: 221 NAKHAISLAIELNII 235


>gi|171742616|ref|ZP_02918423.1| hypothetical protein BIFDEN_01729 [Bifidobacterium dentium ATCC
           27678]
 gi|283456303|ref|YP_003360867.1| response regulatorof two-component system [Bifidobacterium dentium
           Bd1]
 gi|171278230|gb|EDT45891.1| hypothetical protein BIFDEN_01729 [Bifidobacterium dentium ATCC
           27678]
 gi|283102937|gb|ADB10043.1| Response regulatorof two-component system [Bifidobacterium dentium
           Bd1]
          Length = 220

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            + +     P     LA ++               T   G +       ++     +D  
Sbjct: 1   MKVAIADDDPIVCSSLATILAATGAAEV-----PWTANSGEAAMSKYDENVPDMLLIDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +  D           L    F                Y     DV
Sbjct: 56  MPGMDGLTASERILHAHPD--------ARILVLTTFADEAYIAKAMEIGTKGYLIK-QDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-------HWGKDFELTGRE 190
           + +   +  +     ++  + L ++           +  +           +   LT RE
Sbjct: 107 SSVIPAVQAVMAGQIVMGAEVLAKLRFANGAAPTAARPNEPQDSGWMDAPDRFAHLTDRE 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +  ++EG  + EIA  L +S  TV N I+ I+ KT    R+    
Sbjct: 167 RDVVELVAEGLDNREIAAKLFLSEGTVRNRISDILAKTNISNRTKLAV 214


>gi|154520214|gb|ABS82781.1| putative two component transcriptional regulator [uncultured
           Methylophaga sp.]
          Length = 217

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 27/221 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASH----------FLLVRWDLFQEQKLDSIVSSDWPFD 85
           ++ +D           L E  G             +        +   +D  +      +
Sbjct: 8   ILLIDDHAILREGYQQLLESAGFEVIGQSGNAEEGYQAFIALQPKVCIIDLTMPGTGGLE 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            VR +   +        +    L C +       +         Y + +     +   + 
Sbjct: 68  CVRRICNRD--------KDARILVCSMHEETTLAMRALELGAIGYITKSCSSDVLIEAVK 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  K   +  +    I +            D        L+ +E      ++EG + +E
Sbjct: 120 SVAEKRHYLGAEVARSIAM------EKLIKTDQKIDS---LSHQEFAVFRMVAEGMSIEE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+  L ++  TV+NY  ++MRK  T   +  I  A +  ++
Sbjct: 171 ISKSLTLAPKTVSNYKTNMMRKLGTTKLADIIFLAQKIGLI 211


>gi|167032249|ref|YP_001667480.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166858737|gb|ABY97144.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 216

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R +    +        R++ +        R+    ++             
Sbjct: 6   ILIADDHPLFRGALRQAVTLGLGPDVRLVEVASIAELETRLSEKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEAAVVVKSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +             ++        ++             LT 
Sbjct: 104 GFIPKSSPLEVIQDAVRKVLDGEVWWPPQAFEKV--------DVSAEAKAASEGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|327468268|gb|EGF13753.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 199

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G      +  +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIHTVLAGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199


>gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans]
          Length = 210

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 18/201 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH------ 114
           +     +     ++  I   +   +        +      V+ R                
Sbjct: 11  YAYAIMNKKDPSQMQII---NNNPEWFDVYLERKYQFIDPVIIRGLRSVEDYSWENKVIL 67

Query: 115 TLPENITPPAGMDNRY------CSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAA 167
           +   N+T       +Y           D     + L ++  K      +   +       
Sbjct: 68  SEGYNLTRIFNESIQYNIYQGRTFPLHDYLNNLVLLSVIGLKDSEHDIENHRQKFISFLT 127

Query: 168 YQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                  +        K+  L+ RE E L W+S GKT  E+++IL I+  TV  ++ ++M
Sbjct: 128 NLHQKTLNLYSQHQQKKNVFLSPREREILKWVSAGKTYAEVSIILSIAERTVKFHMGNVM 187

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           +K        A+       ++
Sbjct: 188 KKLGVNNARHAVKLGAELQLL 208


>gi|113867387|ref|YP_725876.1| response regulator [Ralstonia eutropha H16]
 gi|113526163|emb|CAJ92508.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 210

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 40/236 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +                 ++ + T               
Sbjct: 14  TVFIVDDDEAMRDSLTWLLEGNGY---------------QVRSFTSAEQF--LAAYDASQ 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   M   + D    ++      F      +P  ++       
Sbjct: 57  VSCLILDVRMPGMSGPELQERMLAEQIDI--PIV------FITGHGDVPMAVSTMKRGAI 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +                 +   A    +  +          +LT 
Sbjct: 109 DFIEKPFDESELRALV---------------ERMLTKARTDHSAAREQRAAKDLLGKLTT 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  N
Sbjct: 154 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSRN 209


>gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 200

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 61/229 (26%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++  +                G +   L    L      D  
Sbjct: 2   IRVLIAEDQAMVRGALAALLTTEGDFEIAGDA-----PNGRAALDLAIKLLPDVLLTDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L   +                 +    F              + Y       
Sbjct: 57  MPELTGLELAAEIRRLHLPI--------KVVILTTFARAGYLRRALDAGVSGYLLKDAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + +   +  +    R+I  +   E                  W +   LT RE + L   
Sbjct: 109 STLANAIRRIRAGARVIDPELAAEA-----------------WTEADPLTDRERQVLRHA 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EG++  EIA +L +S  TV NY++  + K     R+ A   A +   +
Sbjct: 152 GEGRSGAEIAGLLNLSEGTVRNYLSEAISKLGAANRTEAARIAHQRGWL 200


>gi|260770808|ref|ZP_05879737.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972]
 gi|260614045|gb|EEX39235.1| transcriptional regulator LuxR family [Vibrio furnissii CIP 102972]
 gi|315178850|gb|ADT85764.1| transcriptional regulator, LuxR family protein [Vibrio furnissii
           NCTC 11218]
          Length = 209

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAVSGANLLEADSLEALLALLDKGSE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +           L                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGLIHLRAEH-----PDLPIVVVS---ASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   +  +           +   G           + +    K   LT 
Sbjct: 104 GFIPKSSDMRSLISAINQVLNGEPYFPEGLIANAG-----------ACNDLAEKIAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|313675451|ref|YP_004053447.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312942149|gb|ADR21339.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 213

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 81/243 (33%), Gaps = 30/243 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  Q++ ++  + +     +S++  +SD +     +    +    +             
Sbjct: 1   MENMQISTIIADDHKLFAQGLSNILGQSDEIEIKAIVHNGKALVKELK------------ 48

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      +D  +        ++ +             +   +    +         
Sbjct: 49  ---NEATDLALIDLNMPELDGIGAIKQIQALSL--------KTKLIILSTYADEKLVEEA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y     +   +   +  +  K      + +         Q    +++   + K
Sbjct: 98  KNLKVDAYLLKDAEPEELLYTIKEVMEKRYEFNINHI-------LKQTEPLENFSDDFLK 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            ++L+ RE+E +  + +G T+ EIA  + +S  T+  +  +I++K      +G IA+A  
Sbjct: 151 KYKLSRREIEIIQLLKKGLTNQEIADKIFLSVLTIQTHRKNIIQKLEVNNSAGLIAFAHE 210

Query: 243 NNI 245
           +NI
Sbjct: 211 HNI 213


>gi|73540911|ref|YP_295431.1| two component LuxR family transcriptional regulator [Ralstonia
           eutropha JMP134]
 gi|72118324|gb|AAZ60587.1| two component transcriptional regulator, LuxR family [Ralstonia
           eutropha JMP134]
          Length = 215

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 17/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   +    +   + E    S  L LVR    Q   LD  +   
Sbjct: 1   MTRVLIADDHAVVRDGLKHILERAGKFDVVGEAADGSQVLKLVRDCAPQVLLLDLSMPGR 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L+R +   +             L   +       +         Y +       + 
Sbjct: 61  SGLELIRLLRDEQ--------PALRILVLTMHAEQQYIVRAFQAGAAGYLTKESAATELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   G  + +    ++        +              L+ RE+E    +  G+
Sbjct: 113 SAITQVASGGTYVSQAIAGKLATSLQEHQDEAPHLR--------LSDRELEVYRRLVLGE 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               IA  L +S  TV+ Y   +M K    + +  + YA+R+++
Sbjct: 165 PLTAIATALCVSVKTVSTYKMRLMEKMHVPSEAALLRYAMRHHL 208


>gi|298346954|ref|YP_003719641.1| putative response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304389335|ref|ZP_07371300.1| LuxR family DNA-binding response regulator [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298237015|gb|ADI68147.1| possible response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304327453|gb|EFL94686.1| LuxR family DNA-binding response regulator [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 220

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 36/236 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+ ++ +++  + E     ++ +  R+  L  +           R               
Sbjct: 3   ELSEIRVMIVDDHEIVRRGIAEIVDRAADLQVVAEAGSVAEALSRAE------------- 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      DL+R + +        +      +    F          
Sbjct: 50  --LANPNVVLVDLQLPDGTGIDLIRQLRV--------MTPNARMIVLTSFDDDEALAESL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   T     I   +  +     ++    +              ++     G  
Sbjct: 100 EVGAAAYLLKTVAGVEITNVIKAVAAGRTLLDERTVT-------------RTSANRSGPT 146

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT  E + L  I +G ++ EI   LG++  TV N+I +++ K   + R+   A+
Sbjct: 147 EHLTPTEKKILGLIGDGLSNREIGDTLGVAEKTVKNHITALLSKMGLQRRTQVAAW 202


>gi|311112352|ref|YP_003983574.1| two component system response regulator [Rothia dentocariosa ATCC
           17931]
 gi|310943846|gb|ADP40140.1| two component system response regulator [Rothia dentocariosa ATCC
           17931]
          Length = 215

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 26/225 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRC 89
           R++  +        +  L    G      V       D     + D  +           
Sbjct: 2   RIVIAEDQFLLRQGLENLFTRHGFEVVAAVDDGPSLTDAVLTHRPDVALIDIRMPPTFTD 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--PAGMDNRYCSL--TFDVARIRIGLM 145
             L    +    +     L    +             G+   Y      FD A     + 
Sbjct: 62  EGLRAAVQIRKQIPGQPVLILSQYVERLYVDELHMDGGLGTGYLLKDRVFDDAGFVRSVK 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   G ++  + L E+             +     +   LT RE+E LT ++EG ++ +
Sbjct: 122 AVAAGGVVVDPETLKELM-----------EHRAVQQRLERLTSRELEVLTLMAEGLSNSD 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKT------RSGAIAYAVRNN 244
           IA  L ++  TV  +I ++  K           R  A+ + +RN 
Sbjct: 171 IAEKLFVAEKTVAKHINTLFAKLDLPDTNSNARRVQAVLHLLRNG 215


>gi|15642696|ref|NP_232329.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586612|ref|ZP_01676397.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121726730|ref|ZP_01679955.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|153212581|ref|ZP_01948328.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153803422|ref|ZP_01958008.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153817412|ref|ZP_01970079.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153821283|ref|ZP_01973950.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153825520|ref|ZP_01978187.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|153828368|ref|ZP_01981035.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|227082817|ref|YP_002811368.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2]
 gi|229509830|ref|ZP_04399311.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229513623|ref|ZP_04403087.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229516952|ref|ZP_04406398.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229527372|ref|ZP_04416764.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229606755|ref|YP_002877403.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254225427|ref|ZP_04919038.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254285892|ref|ZP_04960854.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|254851239|ref|ZP_05240589.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255744339|ref|ZP_05418291.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262158551|ref|ZP_06029666.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|262170055|ref|ZP_06037744.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|298500482|ref|ZP_07010286.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657298|gb|AAF95842.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549171|gb|EAX59204.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121630891|gb|EAX63273.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124116452|gb|EAY35272.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124121035|gb|EAY39778.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|125622061|gb|EAZ50384.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126511998|gb|EAZ74592.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126521215|gb|EAZ78438.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|148876198|gb|EDL74333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|149740805|gb|EDM54896.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|150424074|gb|EDN16013.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|227010705|gb|ACP06917.1| transcriptional regulator,LuxR family [Vibrio cholerae M66-2]
 gi|229335004|gb|EEO00489.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)]
 gi|229346015|gb|EEO10987.1| transcriptional regulator LuxR family [Vibrio cholerae RC9]
 gi|229349500|gb|EEO14456.1| transcriptional regulator LuxR family [Vibrio cholerae TMA 21]
 gi|229353304|gb|EEO18243.1| transcriptional regulator LuxR family [Vibrio cholerae B33]
 gi|229369410|gb|ACQ59833.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236]
 gi|254846944|gb|EET25358.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255737864|gb|EET93257.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101]
 gi|262021463|gb|EEY40175.1| transcriptional regulator LuxR family [Vibrio cholerae RC27]
 gi|262029712|gb|EEY48361.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1]
 gi|297540651|gb|EFH76708.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485173|gb|AEA79580.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4]
          Length = 209

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L +      +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHLLVD-----GFVGNDLAE------KVAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|330503862|ref|YP_004380731.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328918148|gb|AEB58979.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 216

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 68/239 (28%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +        + L        ++           R+                 +
Sbjct: 1   MKILLVDDHAVVRQGYASLLRALLPDVQLREACDGEQALQRVQE---------------E 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +      +  R +           L +   LF  +   LP          
Sbjct: 46  IPNLVIMDIGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +         I          LA   A    S D    +  ELT
Sbjct: 98  IGYLTKNSSPEVLVEAVKRTAAGHAYIE-------QPLATQLACNPASSDGLDPRLRELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++ G    +IA  L IS  T++NY   +  K    +++  +  A+ + +V
Sbjct: 151 QREFEIFVMLARGLPPRQIAEKLCISAKTLSNYQTLVKNKLQIASQAELVHLAIDSGVV 209


>gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 199

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + E     +     +      +                        F L    
Sbjct: 2   IKIAIIDDHELVLQGLYDRLKKETHFEVVGAFTSYQDLL--------------FCLKYK- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++     FDL+  +           +     +    F+    +        
Sbjct: 47  SVDVLIIDLMLKDIHGFDLIAQIHQK-----CQTVP--KMILISGFYEPLLHKRALDLGI 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    ++I  D L +                    +   LT
Sbjct: 100 KAFLPKECSYDELISTVYNVSKGNQVIPDDLLQK-------------------QESHLLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E+E L  IS+  ++++I+  L ISR TV+ ++++I  K    +R GA+  A++  ++
Sbjct: 141 ESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVREAIKLKLI 199


>gi|27376291|ref|NP_767820.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|8708916|gb|AAF78807.1| two-component system transcriptional regulator ElmR [Bradyrhizobium
           japonicum]
 gi|27349431|dbj|BAC46445.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 214

 Score = 95.0 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 62/238 (26%), Gaps = 33/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +     S    L   SD   R+       S                       
Sbjct: 9   TRVLIVDDHPVVLSGCRTLF-ASDHSIRIDEAMDAKSGHRA---------------YISK 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +     F+L+R +            +                +       
Sbjct: 53  RPDVTVIDISLPDVSGFELMRRIRKD-----DPDAKIIMFSM---NDDPAFVVRAVELGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S   D   +   +  +      I       +          F    +      ++T
Sbjct: 105 QGYVSKGDDPRILLKAVRKVVAGDNFISPQLAEAVT---------FSGAAIKANPASQMT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +  G    E+A  LGIS  TV N  + + +K   K  S  I  AV   +
Sbjct: 156 PRELEILRLLGRGDKIVEVAEALGISYKTVANTTSLLKQKLGAKNHSDLIRIAVEIGM 213


>gi|332359210|gb|EGJ37031.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332359828|gb|EGJ37642.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 199

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G      +  +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIHTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199


>gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 147

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L+ RE E LT I++G ++ EIA  L +S NT+  + +++  K   K R+ A+  A   
Sbjct: 85  YNLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRRTQAVQKAKEI 144

Query: 244 NIV 246
            ++
Sbjct: 145 GLL 147


>gi|298345706|ref|YP_003718393.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390592|ref|ZP_07372545.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657799|ref|ZP_07910679.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235767|gb|ADI66899.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326348|gb|EFL93593.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315491596|gb|EFU81207.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 201

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       ++ L      +  +            +                  
Sbjct: 2   ISVVLADDQALVRGAIAALLELEGDIEVVAQASNGRELLDAVQT---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +         + +  +              L    F              
Sbjct: 47  HPQVAVVDIEMPDLDGIAATQAITETA--------ADTKTLILTTFGRPGYLKRALNAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +   G  + +    E                  +  D  LT
Sbjct: 99  KGFMVKETPAEELAAAVRTIAAGGTAVDQKLATE----------------SLFEGDNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L    +G    EIA  + +S  TV NY++S + KT   T +GA   A     +
Sbjct: 143 EREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAISKTHADTSAGAARKARELGWL 201


>gi|218513962|ref|ZP_03510802.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 111

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y         +   +  +    R I      ++   + +        D    K+  
Sbjct: 2   GAMGYVLKGVGSRGLAEAIQTVLSGARYISPTMSTKVMENSLH--------DAASDKNS- 52

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE E +  +++G ++  I + L +   TV +++  I+ K     R+ A       
Sbjct: 53  LTPREREVMDLVAQGLSNKHIGLRLNLQEKTVKHHMTQILSKLGVSNRTEAALQWRER 110


>gi|150014699|gb|ABR57220.1| PedR2 [Pseudomonas putida]
          Length = 212

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIVL  +        + L        ++           R+                  
Sbjct: 1   MNIVLVDDHAVVRQGYASLLRTVLPTVQVREAASGEEALARVQEQV-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L +   LF  +   LP          
Sbjct: 47  -PNLVIMDFGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALEAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      I +    ++                   +   +T
Sbjct: 98  SGYLTKNSAPEVLIEAVQRVLAGHAYIEQPLATQLA--------CTSQQSTSDPRLQRMT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E  T +++G     IA  L IS  TV+N++  +  K    + +  +   +   +V
Sbjct: 150 QRELEIFTMLAKGTPMRVIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVHLGINLGVV 208


>gi|160947148|ref|ZP_02094315.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
 gi|158446282|gb|EDP23277.1| hypothetical protein PEPMIC_01080 [Parvimonas micra ATCC 33270]
          Length = 199

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 23/210 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D  +     +  +    G    L         + +++ K+D ++      ++    
Sbjct: 3   ILMVDDDLLVLNALSTILGKSGYEIVLATTDSKKAIETYKKNKIDVVILDIRMKEVNGVD 62

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              E   +    +    +    F+   + I               +VA +   +  +   
Sbjct: 63  VAIEILDFD---KDAKIMLLTTFNDRDDIIRALNKGVLGVILKD-NVASLIPAIESVSLG 118

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVI 209
            +I+  +                K+      KDFEL T +E+E L  I++G ++ EI+  
Sbjct: 119 NKILDNEL-------------NLKNLFNTTKKDFELLTQKEIEILEQIAKGLSNKEISEK 165

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L +S  TV NYI+ I+ K   + R+    Y
Sbjct: 166 LFLSEGTVRNYISGILEKLELRDRTQLAIY 195


>gi|120555133|ref|YP_959484.1| two component LuxR family transcriptional regulator [Marinobacter
           aquaeolei VT8]
 gi|120324982|gb|ABM19297.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 221

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 30/235 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +     ++   A  + +D   +    + +                 
Sbjct: 4   TIIVADDHPLFRAALKQAVNQAVPDAETVEVDSIKALQAAVES--------------HPD 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     F  +  + +  +     V+             L           +
Sbjct: 50  ADLILLDLNMPGAHGFSGL--VFMRGQYPGLPVVVVSGSE------DLQVMRRSIDYGAS 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I   +  +      +           A     M         +   LT 
Sbjct: 102 GFIPKSAPLPTITEAIQAVLEGDVWLPEGV-------ADKIERMQAETTDFSERLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++   L  ++EG  + +IA  L +S  T+  +I ++ RK   + R+ A+  A++ 
Sbjct: 155 QQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKLGVRNRTQAV-IAIQQ 208


>gi|331010111|gb|EGH90167.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 208

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     L R  L     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVIAETDNGVDALQLAREHLPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  ++                   P   +    +         Y     D+  +  
Sbjct: 61  GLEVIARLSA----MTLPFKVLILTSQAPGHFS----MRCVQAGAAGYVCKKQDLTELLS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L        +                 L+GRE+  L  ++ GKT
Sbjct: 113 AIKAVLSGYSYFPNQAL--------HTVRSSMGNASESDMVDRLSGREMMVLQQLARGKT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K    +    I  A RN +V
Sbjct: 165 NKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGLV 208


>gi|226349997|ref|YP_002777110.1| two-component response regulator [Rhodococcus opacus B4]
 gi|226245909|dbj|BAH47173.1| two-component response regulator [Rhodococcus opacus B4]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  +     S +  +   +     +            +                  
Sbjct: 2   ISVVVCDDHGIIRSGIQRILETTTDFHLVTSAPTGELLLQAVRDFA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +S     DL+         +   +      +   ++              
Sbjct: 48  -PELVVLDIRLSDCNGLDLLE--------QISAISPETRVVMLSMYGARGYVEKAKTRGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +      +                    S  +       L+
Sbjct: 99  RGYITKECLDEELVSVLYAVMKDEGFVSFRADTT---------EPGGSEGLLEANIDSLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    ++
Sbjct: 150 SRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGLL 208


>gi|28899640|ref|NP_799245.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840435|ref|ZP_01993102.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260361511|ref|ZP_05774558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260879130|ref|ZP_05891485.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895483|ref|ZP_05903979.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|260903309|ref|ZP_05911704.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|28807892|dbj|BAC61129.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149745902|gb|EDM57032.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308088067|gb|EFO37762.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308091599|gb|EFO41294.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109554|gb|EFO47094.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|308112848|gb|EFO50388.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|328472235|gb|EGF43105.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 50/171 (29%), Gaps = 19/171 (11%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +          ++         V           +    
Sbjct: 52  PDLVLLDLKMPGANGMSGLIHLRAE--YPDLPIVVVSASEEPTVV------SQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               + +    K   LT 
Sbjct: 104 GFIPKSSDMRELVNALNQVLNGDPYFPEGLITN-----------NAACNDLAEKIAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203


>gi|289666383|ref|ZP_06487964.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 200

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +  +       S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDIEVVGSAGDGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 47  QPDVLVTDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AGYLLKDAPAEQLVDALRQVQRGGRVIDPQLAIDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 142 ERERTILRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|194289411|ref|YP_002005318.1| response regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193223246|emb|CAQ69251.1| putative RESPONSE REGULATOR [Cupriavidus taiwanensis LMG 19424]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 40/236 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +                 ++ + T               
Sbjct: 14  TVFIVDDDEAMRDSLTWLLEGNGY---------------QVRSFTSAEQF--LAAYDASQ 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   M   + D    ++      F      +P  ++       
Sbjct: 57  VSCLILDVRMPGMSGPELQERMLAEQIDI--PIV------FITGHGDVPMAVSTMKRGAI 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +                 +   A    +  +          +LT 
Sbjct: 109 DFIEKPFDESELRALV---------------ERMLQKARTDHSTAREQRAAKDLLGKLTT 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  N
Sbjct: 154 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSRN 209


>gi|77457409|ref|YP_346914.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77381412|gb|ABA72925.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 216

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 13/215 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D    +       + TM +      V  +    +   L ++   D ++      
Sbjct: 5   DILIADDHP--LFRSALHQAVTMGLGPDVRMVEVASIAELETRLTEKADWDLVLLDLNMP 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                  L      Y  +                 +       + +   + D++ I+  +
Sbjct: 63  GAFGFSGLVMLRGQYPQIPVVMVSAQ---EEASVMVKSREFGASGFIPKSSDLSVIQEAV 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +              +        ++             LT ++   LT + EG  + 
Sbjct: 120 RKVLDGDVFWPPQAFEAV--------SVSDEAKAASDGLASLTPQQFRVLTMVCEGLLNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 172 QIAYELSVSEATIKAHVTAIFRKLNVRTRTQAALL 206


>gi|83945712|ref|ZP_00958057.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83850913|gb|EAP88773.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 66/224 (29%), Gaps = 20/224 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V  +      L     L            + + +G     L++   F    +D  +   
Sbjct: 6   LVEDIAETRAWLREAAELAFPGCRISEATRVRDALG-----LMQSRAFDLAIVDLGLPDG 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               L++ M               T +   V       I   +   + Y           
Sbjct: 61  DGGQLIQAMKDHH--------PAATIVVATVMGDDASVIAALSNGADGYLLKDARQDVFV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +      +          +A      F+   +      +LT RE + L+ I  G 
Sbjct: 113 RQLTAIDQGEPALSPS-------IARRIIEHFRRTALVETDGGDLTPRERDVLSLIGRGL 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + E A  LG+S +T+  +I S+  K    TR+ A   A R  +
Sbjct: 166 RNAEAASALGLSEHTIAGHIKSVYSKLGISTRAEAALLASRLGL 209


>gi|329924379|ref|ZP_08279496.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328940730|gb|EGG37047.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 201

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  + +      + L    D +  +  +                 G   +  +R  
Sbjct: 2   IRIVIAEDQQMLRGAFASLLNFEDDIEVVAEVPD---------------GQRAWDAIRQH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L   +  +         Q    +    F              
Sbjct: 47  QPDVCLLDIEMPHINGLELAESIRQAG--------QSCKIMIVTTFARPGYLQKAMDAQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +    R++  D    + +                 ++  L+
Sbjct: 99  EGYLLKDEPIDFLIEAIRRVMKGERVVSTDLAAALFM----------------KEENPLS 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L     G T+ +I+  L ++R TV NY++S ++K    +R  A+  A     +
Sbjct: 143 EREIEMLRLTKRGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIAEDKGWL 201


>gi|260463507|ref|ZP_05811707.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259030832|gb|EEW32108.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 220

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 61/237 (25%), Gaps = 28/237 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + I +  +       V+   +       +                          +  
Sbjct: 3   EAIRIAIIDDHPLFREGVTRSLSEIGGFEMVGEGATAQDAER---------------IAS 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +       +   +A     K          +   V     +       
Sbjct: 48  TARPDILLLDISMPGGGLTAVAGILANHPAQKI---------VMLTVSEANADVTKALNA 98

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y         +   L  +      +       +           +  D    +  +
Sbjct: 99  GVHGYVLKGVGSRALADILRNVVAGESYLSPMLSARL----LSDLQSQQPADGMADRLRQ 154

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT R+ E L  ++EG ++ E+A+ L +   TV +++  ++ K   + R+ A      
Sbjct: 155 LTERQSEILRLVAEGLSNKEVALRLDLQEKTVKHHMTGVLSKLNARNRTEAALMMRE 211


>gi|221210485|ref|ZP_03583465.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
 gi|221169441|gb|EEE01908.1| DNA-binding response regulator, LuxR family [Burkholderia
           multivorans CGD1]
          Length = 214

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 56/227 (24%), Gaps = 25/227 (11%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P   D L   +             A           L          +D 
Sbjct: 10  AARLLLVDDHPLVRDGLRMRLEAADLSVVAEAGNA------DEALALAAELEPDLALMDV 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++      L                     L   +   +           + Y      
Sbjct: 64  GMNGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSP 115

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            + I   +  +                      A               LT RE + L  
Sbjct: 116 ASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASAAASPLDRLTPRERDILDA 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 165 LAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 211


>gi|148548084|ref|YP_001268186.1| response regulator receiver protein [Pseudomonas putida F1]
 gi|74484334|gb|ABA10819.1| response regulator [Pseudomonas putida]
 gi|148512142|gb|ABQ79002.1| response regulator receiver protein [Pseudomonas putida F1]
          Length = 206

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 32/219 (14%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVG-----ASHFLLVRWD----LFQEQKLDSIVS 79
            SD  + +  LD   +    + +L   +G      S   +   D          LD  + 
Sbjct: 1   MSDRASVIYILDDDNAVLEALSSLVRSIGLSVECFSSASVFLNDVNRSACGCLILDVRMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                D+ R +            ++   +F      +P  +         + +  F    
Sbjct: 61  EMSGLDVQRQLKELG--------EQIPIIFISGHGDIPMAVKAIKAGAVDFFTKPFREEE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +                    LA  Q +              L+ RE + L ++  
Sbjct: 113 LLGAIRAALK---------------LAPQQRSNAPRVSELKENYESLSKREQQVLKFVLR 157

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           G  + + A+ L IS  TV  +  +IMRK    +    + 
Sbjct: 158 GYLNKQTALELDISEATVKVHRHNIMRKMKVSSIQDLVR 196


>gi|15595232|ref|NP_248724.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107099028|ref|ZP_01362946.1| hypothetical protein PaerPA_01000036 [Pseudomonas aeruginosa PACS2]
 gi|116053755|ref|YP_788190.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152985987|ref|YP_001345432.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218888780|ref|YP_002437644.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254237723|ref|ZP_04931046.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|254243146|ref|ZP_04936468.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|296386510|ref|ZP_06876009.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|13959718|sp|P24908|TRPO_PSEAE RecName: Full=Putative transcriptional regulator
 gi|9945855|gb|AAG03424.1|AE004443_2 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115588976|gb|ABJ14991.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169654|gb|EAZ55165.1| hypothetical protein PACG_03811 [Pseudomonas aeruginosa C3719]
 gi|126196524|gb|EAZ60587.1| hypothetical protein PA2G_03945 [Pseudomonas aeruginosa 2192]
 gi|150961145|gb|ABR83170.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218769003|emb|CAW24761.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 207

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 68/224 (30%), Gaps = 17/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +S +    D  A  + +                 GA    + R        LD  +    
Sbjct: 1   MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKID 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  +   + D           L     +               + S   +++ + +
Sbjct: 61  GLEVIARLKSLKLD--------TKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLL 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
               +           L  I   +                   L+ RE+  L +++ G T
Sbjct: 113 AAKAVLAGYIHFPTGALRSINQQSRDNEARMLES---------LSDREMTVLQYLANGNT 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IA  L +S  TV+ Y + IM K    + +G I +A R+ ++
Sbjct: 164 NKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI 207


>gi|163755235|ref|ZP_02162355.1| DNA-binding response regulator, LuxR family protein [Kordia
           algicida OT-1]
 gi|161324655|gb|EDP95984.1| DNA-binding response regulator, LuxR family protein [Kordia
           algicida OT-1]
          Length = 226

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 74/244 (30%), Gaps = 24/244 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E   + I +  ++    + +S + TR      +   +       ++             
Sbjct: 1   METPMIKIAIADDEALFRAGMSFILTRVKNFEIVFEAENGSDLLDKLKN----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      +D  +      +  + +        Y  ++    +    +         
Sbjct: 50  --SKEKPDVVLMDLKMPLLNGVESTKILQKE-----YPEIK---VIAVTSYDGKSFITNM 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y         +   +  +  KG          + ++     +           
Sbjct: 100 IDVGASSYLLKNTSPKIVVHTINEVHAKGFYYDE---RVLKIIHENLLSAKSKRIKSDLD 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  I    T++EIA  L IS  TV  +  +++ KT +K  +G + Y ++
Sbjct: 157 NNLLTKREKEILELICNQYTTNEIAEKLFISPRTVEGHRNNLLLKTESKNVAGLVIYGIQ 216

Query: 243 NNIV 246
             ++
Sbjct: 217 KKLI 220


>gi|145592961|ref|YP_001157258.1| two component LuxR family transcriptional regulator [Salinispora
           tropica CNB-440]
 gi|145302298|gb|ABP52880.1| two component transcriptional regulator, LuxR family [Salinispora
           tropica CNB-440]
          Length = 217

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  +D    + +S +      L  +                    GA     V   
Sbjct: 2   VRVLIVDDDPLVRAALSMIIDGVADLLVVGEATD---------------GAEVPAAVAAY 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 L    F    + +       
Sbjct: 47  APDVVLMDIRMPRLDGLAATEKLRSEPNAPE--------VLVLTTFDADEQVLRALRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A I   +  +     ++      ++                   +   L+
Sbjct: 99  AGFLLKDTAPAEIVHAIRRVAVGETMLSPTVTRQLVAHVTGGVGADSRRQRAQERLAMLS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    +  G+++ EIA  L +S  TV  Y++ ++ K     R           +V
Sbjct: 159 EREREVAIALGRGRSNAEIAGELFMSVATVKAYVSRLLAKLDLNNRVQVALLVHDAGLV 217


>gi|37223250|gb|AAQ90227.1| LuxR [Photobacterium leiognathi]
          Length = 217

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 17/197 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKACRSNNDINQCLSDMTKMVHCEYYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + +   ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYXKINIANNKSNNDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVILGISRN 215
           EGK+S + + ILG S  
Sbjct: 198 EGKSSWDSSKILGCSER 214


>gi|58582700|ref|YP_201716.1| LuxR/UhpA family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427294|gb|AAW76331.1| transcriptional regulator luxR/uhpA family [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 239

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 67/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + ++   +  +   +   +   ++  L               
Sbjct: 27  IRVFLIDDHALVRTGMKMILSKEVDVCVVGEAESGEAALPQIRQL--------------- 71

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +   +      ++    +   P                
Sbjct: 72  KPDIVLCDLHLPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGA 123

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L      +  +     +     L+
Sbjct: 124 SGYVGKGGDAHELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LS 174

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 175 PRELEVALLLTQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 232


>gi|313835666|gb|EFS73380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928337|gb|EFS92168.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970267|gb|EFT14365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908080|gb|EGG27839.1| putative two component response regulator [Propionibacterium sp.
           P08]
          Length = 218

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 61/242 (25%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  +D      +  +   ++ L  +                            
Sbjct: 1   MLPVRVLLVDDDTLVRKALRQILEATNDLEVVGEAGDGDEAVRHA--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +  S              +           I    
Sbjct: 46  --HQADVVLMDLRMPGMGGVEATSRIIHSPSPP--------KVVVLTTVTADAAIIDAIH 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   T     I   +         +      ++ L         +          
Sbjct: 96  AGASGFLLKTSSPEEIVNTVRAAHAGDAFMSPTSTRQL-LEQLRSDAGRRDRRAARRTLA 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++EG T+D IA  L IS +TV  ++++I  K    +R        R  
Sbjct: 155 ALTDREREVAVAVAEGLTNDAIAAQLNISASTVKAHLSTIQTKLDVDSRVRIAVLVERAG 214

Query: 245 IV 246
            +
Sbjct: 215 YL 216


>gi|239831167|ref|ZP_04679496.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
 gi|239823434|gb|EEQ95002.1| two component LuxR family transcriptional regulator [Ochrobactrum
           intermedium LMG 3301]
          Length = 231

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 14/220 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H     D       L   +S   +   + E         +  +      L   ++     
Sbjct: 19  HFIIADDHPLFRGALRQVLSGQSQSVEIIEVGDFDAVKKLVGEREDIDLLLLDLTMPGGT 78

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L   + L        ++               E         + + S +  +  I   +
Sbjct: 79  GLSGLVTLKALQPALPIIIVSATDDAATIRHAVEL------GASGFISKSASMETIGEAM 132

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         D   +               +    +   LT ++   LT ++EG  + 
Sbjct: 133 STVLAGDIWTPADIELD--------HAHDPEIEALIARLRTLTPQQTRVLTMLAEGLLNK 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 185 QIAYELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 224


>gi|254381845|ref|ZP_04997208.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194340753|gb|EDX21719.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 205

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 65/230 (28%), Gaps = 29/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           + LA ++ L+  +    ++       G       R        LD 
Sbjct: 5   PIRILLAEDQSMVREALAALLGLEPDIEVLAQVAR-----GDEVLAAARAHDVNVALLDI 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +           +     +    F              + +      
Sbjct: 60  EMPGMTGIEAAASLRT--------AVPHVKIVILTTFGRPGYLRGAMEAGASAFLVKDAP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A++   +  +    R+I                               LT RE E L  
Sbjct: 112 AAQLADAVRKVLAGERVIDPTLAAA----------------ALAEGANPLTDREREVLRA 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              G T+ E+A  L +S  TV NY+++ ++K A++ R+ A+  A     +
Sbjct: 156 AEFGATNAELAERLHLSPGTVRNYLSTAIQKLASRNRAEAVRVAREKGWL 205


>gi|125718762|ref|YP_001035895.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323350426|ref|ZP_08086089.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498679|gb|ABN45345.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           sanguinis SK36]
 gi|322123363|gb|EFX95041.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|327462857|gb|EGF09179.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
          Length = 199

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G      +  +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIQTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199


>gi|322437524|ref|YP_004219614.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165417|gb|ADW71120.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 216

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 29/241 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  + +     +  L         +                    G     + 
Sbjct: 1   MAELRIMIADDHDLIRRGLRTLLGTRSGWTVVGEASN---------------GVDAVTMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     LD  +      +    M +           R   L   +  +         
Sbjct: 46  ASLMPDIAILDFSMPGLTGPEAAARMRVCA--------PRTKVLVLTMHDSEEVLREVLQ 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     + + +  +     I + +R   +                      
Sbjct: 98  AGAKGFMLKSDADRDLLMAVQRISESDEIFVSERAVSLR------GGPLNVSGAGKASLA 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE E +  +++G TS E A  L IS  TV ++  +I RK +  + +  + YA+RN 
Sbjct: 152 QLTVREREVMRLLADGMTSKEAAARLCISTRTVESHRINISRKMSFGSVADLVRYAIRNG 211

Query: 245 I 245
           I
Sbjct: 212 I 212


>gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus
           ruber DSM 1279]
 gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus
           ruber DSM 1279]
          Length = 194

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 57/222 (25%), Gaps = 31/222 (13%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D     + L   +             G     L    L     LD  +      
Sbjct: 2   RLLIADDHPLFRMGLRAALEREGFAVVAEAGDGQEAVKLGLELLPDGVLLDVRMPQMDGI 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +     +                F+             + Y S       +   L
Sbjct: 62  TATRMLREQRYN--------GLIALLTTFNEPVLVQQAAYAGADAYWSKELPPEALAERL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L                              +   +   LT RE E L W+++G ++ 
Sbjct: 114 RRLGLG-----------------------LEPRLRAPELPRLTAREQEVLQWMAQGLSTK 150

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  + IS  TV +++  +  K   + R  A+  A    ++
Sbjct: 151 EIARQMHISPETVKDHLLRLYEKLEARNRVEALERARSLGLL 192


>gi|71736868|ref|YP_273631.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557421|gb|AAZ36632.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 208

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 62/224 (27%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     L    L     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVIAETDNGVDALQLALEHLPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  ++                   P   +    +         Y     D+  +  
Sbjct: 61  GLEVIARLSA----MTLPFKVLILTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L        +                 L+GRE+  L  ++ GKT
Sbjct: 113 AIKAVLSGYSYFPNQAL--------HTVRSSMGNASESDMVDRLSGREMMVLQQLARGKT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K    +    I  A RN +V
Sbjct: 165 NKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGLV 208


>gi|229521769|ref|ZP_04411187.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
 gi|229341363|gb|EEO06367.1| transcriptional regulator LuxR family [Vibrio cholerae TM 11079-80]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L +      +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHLLVD-----GFVGNDLAE------KIAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|56695084|ref|YP_165431.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676821|gb|AAV93487.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi
           DSS-3]
          Length = 204

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 35/237 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       +S           +   D               +GA+        
Sbjct: 1   MRILLADDHALVRDTISVYLQSEGDAEVVAVPD---------------LGAAMRAADTEG 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      D +R  A         V          V               
Sbjct: 46  PFDLILLDFNMPGMNGLDGLR--AAIRHAPDTPVALLSGSAPNRV------AQEAVDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +   +  +      +    L                     G    L+
Sbjct: 98  AGFVPKTLAAKSLLHAVRFMIAGEVFVPSTVLQA------------PEAPSDGGLTATLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE + L  +  G  + EIA  L +   T+  ++ ++ +K   K R+ A   A    
Sbjct: 146 RREKQVLGGLCRGLPNKEIARELDLQEVTIKLHVRTLCKKLNAKNRTQAAMIARDAG 202


>gi|33863672|ref|NP_895232.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33635255|emb|CAE21580.1| possible DNA-binding response regulator [Prochlorococcus marinus
           str. MIT 9313]
          Length = 232

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 13/205 (6%)

Query: 44  SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
           SW      L   VGA+          +    D ++ +D          + +  +    L+
Sbjct: 29  SWVGWFDCLGPLVGAATGEDETLSCLKSSNADLLICTDLLESGNGPSLVRKAKQLKPDLK 88

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTF-DVARIRIGLMLLFPKGRIILRDRLWEI 162
               +  P+  TL + I       +  C+        +   L  +   G  +       +
Sbjct: 89  ALMLIQRPLLRTLLDAIEAH---CDGLCAHELVGSGTLLAALSAIESDGTYLDSVVAGVL 145

Query: 163 GLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
                      +  +    +  + L+ RE + L  I +G ++  IA  L +S +TV +++
Sbjct: 146 --------RHGRLGNGKSSRQIDNLSLREGDVLRGICKGMSNQNIADELYLSIDTVKSHV 197

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            ++++K   + R+ A+  A R+ +V
Sbjct: 198 HNLLQKLPARDRTHAVVVAFRDGLV 222


>gi|332532863|ref|ZP_08408736.1| transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037709|gb|EGI74160.1| transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 216

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 17/220 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +++ +  D    +   +           E   +S F      L +++ LD ++       
Sbjct: 1   MSQFLIADDHPLFREALKGALSAKFEGLEVFESSDFDSTLQVLSEQEDLDILLLDLHMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                 L    + Y  L             +             +   +     I   + 
Sbjct: 61  NGDLYGLIRIREEYPSLPIAVVSG---SEDVNIVSKVMGYGAMGFIPKSSSSDDIASAIN 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      + ++   ++  +      +             LT ++   L ++ EG  + +
Sbjct: 118 QILEGDTWLPKELKNKVAEIEGEDREIAAQVAS-------LTPQQYRVLQYLHEGLLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L IS  TV  +I +I RK     R+ A+  A +  +
Sbjct: 171 IAYELHISEATVKAHITAIFRKLGVYNRTQAVLIAAKLKL 210


>gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 197

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 66/239 (27%), Gaps = 43/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  ++      ++ L      L  +  +    +    +                  
Sbjct: 2   IRILLADDEHLVRGAIAALLGLEGDLEVVAQVGRGDAVEEAVRR---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +                 L    F          A   
Sbjct: 47  DPDVIVLDVEMPGMDGLTVAERLTGRAI------------LILTSFGRPGYLRRALAAGV 94

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +        ++   +  +   GR +  + L  + + A                D  LT
Sbjct: 95  RGFIPKDAPAEQLAEAIRKVHAGGRYLDPE-LAALAMTAG---------------DCPLT 138

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L   +EG T  EIA  + +S  TV NY+++ + K     R  AI  A     +
Sbjct: 139 QRERDALKLAAEGATVAEIAAAIHLSEGTVRNYLSNAITKLGAGNRITAIRVAREMGWI 197


>gi|239980726|ref|ZP_04703250.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 204

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 8/191 (4%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
            E VG +             + D  V      D        E       ++         
Sbjct: 16  IEVVGEAGTAAEALTRIPATRPDVAVLDVRLPDGSGVEVCREVRSRDESVKCLMLTSYAD 75

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
              L + I       + Y       A +   +  +     ++       +          
Sbjct: 76  DEALFDAIM---AGASGYVLKAIRGADLLDAVRQVAAGHSLLDPAATARVLERL-----R 127

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    +   LT +E   L  I EG T+  I   L ++  T+ NY+++++ K   + 
Sbjct: 128 GHGTPGDDDRLSGLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMER 187

Query: 233 RSGAIAYAVRN 243
           RS A AY  R 
Sbjct: 188 RSQAAAYVARM 198


>gi|226357726|ref|YP_002787465.1| transcriptional regulator, LuxR family, sensory transduction
           protein liaR [Deinococcus deserti VCD115]
 gi|226319968|gb|ACO47961.1| putative transcriptional regulator, LuxR family, putative sensory
           transduction protein liaR [Deinococcus deserti VCD115]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 24/232 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
               R   V       D L   +  +  +       +     G     ++         +
Sbjct: 3   ASPIRVLLVEDHAFTRDGLRVAVNFEPDLRVVGEARS-----GEEALEVLSRTAVDVAVV 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +           +             +   +     +   E +   A   + YC  +
Sbjct: 58  DIGLPGMDGIQTAGEVRRH--------YPQTRVVMLTAHNLRAEVLAALASGADAYCLKS 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                + + +         +           A +     ++  V      EL+ RE+E L
Sbjct: 110 ARPDLLLLAIRAAAVGSAFLDPQV-------AHHVLGAMRTPGVP----VELSARELEVL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             I++G  + EI + L IS ++V  ++  ++ K     R+ A   A+R  ++
Sbjct: 159 RLIADGLGNREIGMQLEISVSSVKLHVQDLLEKLQASDRTQAAVKALRQGLL 210


>gi|331001413|ref|ZP_08325033.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
 gi|329568295|gb|EGG50106.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 33/213 (15%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGAS---------HFLLVRWDLFQEQKLDSIVSS 80
             +L  +  +D  +     +  + E  G             +L          LD ++  
Sbjct: 6   DPILPLIRIVDDDMDLLEGLAYMLEGEGWEVKTYPTAESFLVLDDSARPGCLVLDYLMPK 65

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L   +          +L      F      L   I+      +       D   +
Sbjct: 66  MNGVELQNRLKEKGFSH--PIL------FLTAHADLDMAISVFRKGADNLLKKPVDPQEL 117

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +     K                        + +    +   L+ RE + L  + EG
Sbjct: 118 IDAISEGIRKDS----------------AEQTQGNIEDLNKRFQSLSMREKQVLALVKEG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            T+ EIA  LG+S  TV ++      K   K++
Sbjct: 162 LTNFEIAERLGLSERTVESHRFHAYGKLGLKSK 194


>gi|325689072|gb|EGD31080.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 199

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G       + +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCFKSETLDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIHTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199


>gi|319788214|ref|YP_004147689.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466726|gb|ADV28458.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 200

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 61/239 (25%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L      +               +  L               
Sbjct: 2   IRVLLAEDQAMVRGALAALLGMEADIEVAGVAADGEEAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      DL   +A  E             +    F              
Sbjct: 47  QPDLLVTDIEMPGLGGLDLAARIARHELP--------VKVVIVTTFARAGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        R+   L  +   GR I  +   E                  W +   L 
Sbjct: 99  RGYLLKDAPPERLAEALRTVHRGGRAIDPELALEA-----------------WTEADPLN 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L    EG +S  IA  LG+S  TV NY++  + K     R  A   A +  ++
Sbjct: 142 ERERQVLRLAGEGLSSTRIAERLGLSHGTVRNYLSEAIGKLGAANRVEAHRIARQRGLL 200


>gi|226198733|ref|ZP_03794297.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929173|gb|EEH25196.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
          Length = 188

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 15/179 (8%)

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +  D   D +   +  ++      L   T +  P            +   
Sbjct: 19  PCDVVISDYNMPDDNFGDGISLFSYIQRRYPSTRLIALTMISNPAIIH-----NLISHGI 73

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S + ++  I   +   + KG  +      E  + + +              + +L+
Sbjct: 74  STVLSKSDEIGHIIAAIHASYAKGSYLSP--TMETIVNSGH--------GKSPDGEVQLS 123

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +   + G + +EIA  L  S+ T+++  A+ MRK    +    + YA++  +V
Sbjct: 124 PREIEVVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGVNSDIDLLKYALKAKLV 182


>gi|254521736|ref|ZP_05133791.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219719327|gb|EED37852.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 221

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L  + +      +D  +     
Sbjct: 9   DHPLFREALRGAVQRVIPGVQLFE-----ADSVEALYALADQHNDADLVLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+ +  + +     +  V+         V     +           +   + D   I   
Sbjct: 64  FNAL--VHMRSLHPHLPVVVVSAREEATVMRRALD------HGALGFIPKSADSDTIGHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +         +        A               +  ELT ++   L  +  G+ +
Sbjct: 116 LGTILDGETWAPPE--------AHNVPPTGSEEREVGQRLRELTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  L +S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|46201969|ref|ZP_00054016.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 76/239 (31%), Gaps = 39/239 (16%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + + + IV+  ++    S +  + +  +             +   +      VG     +
Sbjct: 5   QSRPITIVIAEKNPLLQSSLIKIFSGDERFTVAAVTSDGERFIEAVEKTPFDVG-----V 59

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           + W++        + +     D  R +  +       V ++   L               
Sbjct: 60  IGWEMPYLDGRGVLQTLRSRVDAPRLIVYTGSPNPD-VPRQAMTL--------------- 103

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +CS      ++   ++ +     +     +  +                     
Sbjct: 104 --GAAGFCSKREPPEQLLDTIIAVAAGRMVFPFIDVSSLA----------------SDPL 145

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             LT RE E L  ++ G T+ ++A  L IS NTV  ++ ++  K     R+ A+A+ ++
Sbjct: 146 AGLTPRERELLAALAGGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGNRAQAVAFYLK 204


>gi|331672755|ref|ZP_08373541.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA280]
 gi|331069976|gb|EGI41345.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA280]
          Length = 254

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 42  QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 86

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 87  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 138

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 139 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 191

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 192 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 251

Query: 244 NI 245
            I
Sbjct: 252 RI 253


>gi|326801506|ref|YP_004319325.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326552270|gb|ADZ80655.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 207

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       + +L    + ++ +            +       G          
Sbjct: 2   IKVIIIDDHPIVIDGLKNLFFTHEDISLVESYKSGKEAIDALK------GMD-------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L   +  +              +   + +      +      
Sbjct: 48  -VDVILLDINLPDMNGINLCSDLKRNH--------PGLKIIALSLHNEHAVIRSMLQNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +  +    + +       +            +          +T
Sbjct: 99  LGYVIKNAPGDEILEAIRTVARGQKYLCSATRTTMT----------NAEADQHITVPLIT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  I +G T+ ++A  L IS +TV ++   +M K         I  A    ++
Sbjct: 149 RREKEVLQLIGKGLTTQQVADQLFISPHTVESHRKKLMEKFEVNNIISVIKLATDYRLL 207


>gi|326317305|ref|YP_004234977.1| LuxR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374141|gb|ADX46410.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 264

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 31/227 (13%)

Query: 51  ALTEYVGASHFLLVRWD---LFQEQKLDSIVSS--DWPFDLVRCMALSEKDKYYNVLQRP 105
           +    +G    +          +   +   V    + P  + +        +   V    
Sbjct: 28  SAAREIGFDAAIYDFSPVSMTPEGVLMTPSVLEYRNMPGPMRKLWVEQGMYQVDPVQALA 87

Query: 106 TELFCPVFHTLPENITP------------------PAGMDNRYCSLTFDVARIRIGLMLL 147
                  F +  ++                        M                 L  +
Sbjct: 88  LRGSGAFFWSYHQDEESVLQPMLDGGARSVSSVLTEWRMTRGVTVPLHMPGNRFATLTAM 147

Query: 148 FPKGRII-----LRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLTWISE 199
           +           L D +  +  +A    +             +D  L+ RE EC+   +E
Sbjct: 148 WQDDNFAQKKMSLVDSVMRLAYMAHILNDHLLKVFTKIQLTPRDVALSDREHECVLLAAE 207

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S +IA  L  + +T+  ++ S  RK   + R+  IA A     +
Sbjct: 208 GMPSKQIAARLNRAESTIVFHLQSAARKLGGRNRAQMIARAAHFGYL 254


>gi|222081090|ref|YP_002540453.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|221725769|gb|ACM28858.1| chemotaxis methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 500

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 76/244 (31%), Gaps = 33/244 (13%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R S    L   +  ++R+        +T    A  +  G S   +V     + + 
Sbjct: 263 RQSEERFSKSFRLSPAAAAISRL----DDFVFTEVNDAFVQLSGYSLEEIVGKTASELRL 318

Query: 74  LDSIVSSD-----WPFDLVRCMALSEKDKYYNVLQRPTELFCPV--------FHTLPENI 120
            D+I +           +          +              V          +L +  
Sbjct: 319 WDNITARRAVEKKLADTIAVRDEAMLMKQKDGGTADCLVSAERVEIGDQQCVIWSLQDIT 378

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                            A +   +  +        R  +  +  L         S     
Sbjct: 379 ERKR-----------SEAELVEAIESVMADTSWFSRSVVDRLATL-----RQVSSGKAPS 422

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  +L+ RE E L  I  G++  E++  L +S+NT+ N++AS+  K     R+ A+ +A
Sbjct: 423 AQLLDLSDREKEILALICRGQSDAEMSETLHLSKNTIRNHVASLYIKIGVNRRAAAVIWA 482

Query: 241 VRNN 244
               
Sbjct: 483 RERG 486


>gi|319945594|ref|ZP_08019846.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748193|gb|EFW00435.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 199

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 64/229 (27%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L +++ L         + A     G     L+         LD  
Sbjct: 1   MRLLVAEDQSMLRDALCQLLLL--QEDVEEVLQA---GDGQEAIRLLETHPVDIAILDIE 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++      +         +   +    F              + Y      +
Sbjct: 56  MPIKTGLEVLEWAKSQQ--------PQLKVVIVTTFKRPGYFERALKAGVDAYVLKERRI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   L  +    +    + +  I                       L+ +E   L  +
Sbjct: 108 TDLMRTLHTVLAGQKEYSPELMEGILA-----------------HPNPLSSQEQAVLKEV 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G ++ EIA  L +S  T+ NY++ I+ K   + R+ A   A     +
Sbjct: 151 AKGASNQEIADRLFLSNGTIRNYMSGILTKLDAENRTEAAKIAQEKGWL 199


>gi|297158850|gb|ADI08562.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 231

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 58/200 (29%), Gaps = 15/200 (7%)

Query: 51  ALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
            +    G     L        +   LD  +      ++ R +     D           +
Sbjct: 2   VVVGEAGTVAEALAGIPAAHPEVALLDLRLPDGSGVEVCREIRAHHPDIKC--------V 53

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F      I         Y         +   +  +     ++       +      
Sbjct: 54  MLTSFADDAALIDAIMAGAYGYVLKDVGSGELLRAVRDVAAGRSLLDPAATARLLERMRT 113

Query: 169 QAN-----MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            A         + ++   +  +LT +E   L  I EG T+  I   L ++  T+ NY++ 
Sbjct: 114 DAETGTDTAAGAGELGDDRSADLTVQERRILLLIGEGLTNRAIGERLHLAEKTIKNYVSG 173

Query: 224 IMRKTATKTRSGAIAYAVRN 243
           ++ K   + RS A AY  R 
Sbjct: 174 LLAKLGMERRSQAAAYVARL 193


>gi|294012227|ref|YP_003545687.1| NarL-like response regulator [Sphingobium japonicum UT26S]
 gi|292675557|dbj|BAI97075.1| NarL-like response regulator [Sphingobium japonicum UT26S]
          Length = 219

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 24/224 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSW--TMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            + + V   P   D +A+ +             +    E + A               LD
Sbjct: 3   AQIAIVDDHPIFLDGMAQFLTSHGHDILFCARSVEEALERMQAE--------EPDLLILD 54

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             + S     ++  +  S              +F  V     + +       +       
Sbjct: 55  VSMKSGGGLAILSAIRGSGST--------VPVIFMTVHIRPEQTLEAIKLGVDGVVLKDS 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   +   +  +    + I    + +         +   +          LT RE+E   
Sbjct: 107 DPNELLSCIQQVMSGNKSIAPFVMEQA------LVHSISAPASEANALAALTERELEIAG 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            I  G  + EIA   G++  TV  ++ SI +K   K+RS  I  
Sbjct: 161 LIRAGLRNREIASRCGLTEGTVKVHLHSIFQKLNIKSRSELIIM 204


>gi|262401983|ref|ZP_06078548.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262351955|gb|EEZ01086.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D        +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDGLLHLLNKESE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L +      +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHLLVD-----GFVGNDLAE------KVAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020]
          Length = 201

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D+      L   +     +  + E   G                +D  +     
Sbjct: 3   RLIIAEDVPMLRGALVALMELEQDLSVVAEVGNGNDILPTALEHRPDIAVIDIDLPGTDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L               A   + Y       + +   
Sbjct: 63  LTAAAKLRSC--------LPSCRVLIITSLGNPAALRRALAAQVDGYVLKDALPSELAQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I      ++ L+A              G   +LT REV+ L   + G+  
Sbjct: 115 IRKVAAGQRVIDP----QLALMA------------WDGPAQQLTPREVDVLRLAAAGEDV 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV NY+ +I+ K   + R  A+  A  N ++
Sbjct: 159 RVIAKELHLSIGTVRNYLTTIVHKLGARNRVDAVRIARDNGVI 201


>gi|119385084|ref|YP_916140.1| two component LuxR family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119374851|gb|ABL70444.1| two component transcriptional regulator, LuxR family [Paracoccus
           denitrificans PD1222]
          Length = 236

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 68/229 (29%), Gaps = 18/229 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           L+ +  +    V   P   D LA  + +   +       +L          +        
Sbjct: 17  LSADRVREILIVDDHPLMCDALALTLKISFGLRNVRTARSLAAAQE----QIRNQGAPDA 72

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +           +                     A     Y 
Sbjct: 73  VILDLNLPDARGAEGLVTLRRQ--------IPDVPITMISADLENAMISAAMAAGAQGYI 124

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S +     +   L  ++   R+       E      +      +      +   LT +++
Sbjct: 125 SKSLGREALVDSLRRMWEGERVTPDSYQPE------HAGEEDAARAELARRFATLTPQQM 178

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + L  I +GK + EI+  L I+  TV  +I +IM K   + R+ A+  A
Sbjct: 179 KILRLICQGKANKEISYELSIAEATVKTHITAIMSKINARRRTQAVLLA 227


>gi|298372989|ref|ZP_06982979.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298275893|gb|EFI17444.1| DNA-binding response regulator, LuxR family [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 212

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 75/240 (31%), Gaps = 32/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLA-RMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + + +  +         +    ++L    +   D      +++  L E            
Sbjct: 2   ITVFIVDDHSLFRLGTRYFLENNNLPVKVLGEADSGYDLFVKLKQLKE------------ 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
            L Q   LD ++      +++  +        Y  ++         F T+ + +      
Sbjct: 50  -LPQMILLDILMPDMSGVEVLEKLREL-----YPQIKVLVLSSETAFATINKMMNI---G 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              + S       +   ++ +         D    I  +            +  G     
Sbjct: 101 IEGFISKAAPYHDLVGAIVSISEDVPYFGCDISRIINCV----------GAIKGGVTIAP 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E + + + G +  EIA  + IS  TV+ +  +I  K   KT    + +AV + I+
Sbjct: 151 TAREREVMLYAASGLSGKEIADKMNISLRTVDKHKNNIFTKFGFKTSMDMVNFAVHHGII 210


>gi|298252386|ref|ZP_06976187.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297545702|gb|EFH79572.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 202

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 144 LMLLFPKGRIIL--RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + ++  +   +   + R  +     +   N+   +         L  RE+E L  ++EG+
Sbjct: 97  VHIVARENSALSVVQSRFPDFAHHNSEPHNISSPHQPVQQSLVTLNKRELEVLRLLAEGR 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L ++++T+  ++  I  K    +R+ AI  A +   +
Sbjct: 157 SNQEIADTLIVAKSTIKWHLKQIYSKLNVHSRTQAIVCARQIGFL 201


>gi|294677045|ref|YP_003577660.1| LuxR family two component transcriptional regulator [Rhodobacter
           capsulatus SB 1003]
 gi|294475865|gb|ADE85253.1| two component transcriptional regulator, LuxR family [Rhodobacter
           capsulatus SB 1003]
          Length = 206

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 64/239 (26%), Gaps = 35/239 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +V +++  + +     ++ L                         L E + A    +   
Sbjct: 2   KVRLLIADDHDLVRDAIAALLRAG-----------GCDEVAVAGTLPEALAAVQAAVQAG 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             +    LD  +      + +  M  +   +   ++                        
Sbjct: 51  GGYDLVLLDYDMPGMDGLEGLAQMKRAFPAQAVAIISGV--------ARPAAAREALEAG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         I   + L+                       +  K  +        L
Sbjct: 103 AIGFVPKAMPARSIIGAVTLMASGSVFAP--------------FDFLKQEEPPV--QGGL 146

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE E L  I  G+T+ EIA  + +   TV  ++ ++ RK   + R+ A   A  N  
Sbjct: 147 TARETEVLRGICAGRTNKEIAREMDLQEVTVKLHVRTLTRKIGARNRTHAAMIARENGW 205


>gi|261419001|ref|YP_003252683.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319765817|ref|YP_004131318.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261375458|gb|ACX78201.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC61]
 gi|317110683|gb|ADU93175.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. Y412MC52]
          Length = 200

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 43/242 (17%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++NI++  +       +  L  R   L  +  +         +               
Sbjct: 1   MVKINILIIGDHGLVMDGIRQLLEREPDLEVVGAVFSPAELEKEIAHF------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D IV         R   L       +       +      +         
Sbjct: 49  --------QPDIIVID---APSQRENYLIWTKNISSRFPASKVVMLSGDASAEYVQAVHE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + S       +   +   +   +    D  +                        
Sbjct: 98  AGAYAFVSKCDSAETLIHAIRESYRGVKSFPTDLAFH--------------------DGS 137

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+  L  I+  KT+ EI   L IS+ TV ++++SI+RK   K+R+GA+  A R  
Sbjct: 138 PLTEMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFRLG 197

Query: 245 IV 246
           ++
Sbjct: 198 LL 199


>gi|147669491|ref|YP_001214309.1| two component LuxR family transcriptional regulator
           [Dehalococcoides sp. BAV1]
 gi|146270439|gb|ABQ17431.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. BAV1]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       +   ++    M+ L E   A    L +  + +    LD  +      
Sbjct: 4   ILIVDDHPIVRAGVKTILNAERGMFTLDEAQNAKETKLKISANNYDLILLDLTLPDSQGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L++ +          + +    L   V       I       + + S       +   +
Sbjct: 64  NLLKDIKT--------IKKHTPILVLSVHPEEQYGIRCIKAGASGFISKESAPFELIKAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   GR I         ++A    +          +   L+ RE +    I++G    
Sbjct: 116 RKVQAGGRYISPALA---EIMACQIFDK------DGPRHLCLSDREFDIFIGIAQGLRVT 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A    +S  T+  Y   ++ K    +      YA  N+++
Sbjct: 167 ELAERFKLSPKTIYTYREHVLTKMGLSSNVELARYADTNDLI 208


>gi|326318307|ref|YP_004235979.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375143|gb|ADX47412.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 233

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 14/220 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P  +  +A  + L   +      +  +E +     ++          +D      
Sbjct: 17  VIDDHPLVARGMAEFLRLHPRLEEARHAHETSEALR----IIASHGSPILALVDF----- 67

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           W  +      +          +          H     +   A   + +           
Sbjct: 68  WLAEGAATSFIDNLFAMSPGTRVLIVSAD---HHPAIVLKARASGAHGFIHKREPPETFH 124

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--GKDFELTGREVECLTWISE 199
             +  +              +   A   A    +         D  LT R+ + L  + E
Sbjct: 125 AAINAVLDGASWFDSGATACLSSTATTTAIGATTPREIHLSPADLGLTPRQGQILALVLE 184

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G  +  IA  L +S +TV  ++ +I++K     R   I+ 
Sbjct: 185 GLPNKPIANALHLSEHTVKEHLTAILQKLGASNRVELISR 224


>gi|120611166|ref|YP_970844.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120589630|gb|ABM33070.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 229

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 8/213 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D       +   +     +        A+        +         +   W  + 
Sbjct: 16  LVVDDHPLVAQGMADFLGLHAAVAETRHAFDATS---ALRIVAAHGPPMLALVDFWLAEG 72

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                ++         +       P        +   A   + +             +  
Sbjct: 73  ASTSFIASLVAMSPGTRVLVTSADP---HPAIALKARASGAHGFVHKGDPPETYHAAVTS 129

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +         +    +   ++      +        D  LT R+ E L  + +G  +  I
Sbjct: 130 VLRGQVWFDANAT-VLPSRSSAGCMAPREIR-LAPADIGLTPRQGEILALVLDGLPNKPI 187

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           A  L +S +TV  ++ +I++K   + R   IA 
Sbjct: 188 ASSLHLSEHTVKEHLTAILQKLEARNRVELIAK 220


>gi|37524335|ref|NP_927679.1| hypothetical protein plu0320 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783758|emb|CAE12615.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 242

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 18/224 (8%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN 100
                      + +  G S F L+    F     +    +++           +      
Sbjct: 19  DPHFVAEICELINKISGFSLFSLLLKARFPISNREVYFFNNYHESWRDLYIEKKYWMIDP 78

Query: 101 VL--QRPTELFCPVFHTLPEN---------ITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           VL  +     F  ++     +         +    G  +         +       +   
Sbjct: 79  VLNFRPVPPSFSKIWDLDFFSKSNGQELWYVNQKYGFRSGITFGLPAFSGTYGIFSVAGK 138

Query: 150 KGRII-------LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            G I          + L     +  Y  +  K     +  +   + RE+E L + ++G T
Sbjct: 139 DGPIDNETMYKCSGEILGVYIRIIRYLTSHTKYLQSFYIDETSFSNRELEVLRYTADGMT 198

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S EI+  + ++++TV+ ++ +I++K   K +  AIA A     +
Sbjct: 199 SIEISSTICVTKSTVDFHLMNIVKKLDCKNKFQAIAKAALLGYI 242


>gi|324996115|gb|EGC28026.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327460591|gb|EGF06926.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327488948|gb|EGF20745.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332365506|gb|EGJ43266.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 199

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G      +  +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIHTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEQGWL 199


>gi|261211265|ref|ZP_05925554.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|262190930|ref|ZP_06049145.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
 gi|260839766|gb|EEX66377.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|262033197|gb|EEY51720.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 19/171 (11%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L E      +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHLLVE-----GFVGNDLAE------KVAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|253997049|ref|YP_003049113.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8]
 gi|253983728|gb|ACT48586.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8]
          Length = 243

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD------FE 185
            +   + +  +GL+ L  +   +    L  +  ++       K       +D        
Sbjct: 122 LIPIAIGQQSVGLIALSGQNLQLSPHELITLQSISGILGLALKQASSMSAEDKDLTVIEH 181

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E    +  G ++ E+A  LGIS  TV  ++  ++ K   + R+ A   A     
Sbjct: 182 LTPREREVFALLPSGLSNRELATKLGISAGTVKIHVERVLSKLNLRDRTQAAVKAYELGY 241


>gi|90414502|ref|ZP_01222477.1| putative response regulator (repressor) in two-component regulatory
           system with UhpB (LuxR/UhpA family) [Photobacterium
           profundum 3TCK]
 gi|90324410|gb|EAS40972.1| putative response regulator (repressor) in two-component regulatory
           system with UhpB (LuxR/UhpA family) [Photobacterium
           profundum 3TCK]
          Length = 202

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 27/218 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V          A+++ ++  ++      +  E        L   D      LD  + 
Sbjct: 4   VALVDDHIIVRSGFAQLLSMEADINVVGEFGSALEA----RKGLPGSDA-DVCILDISMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +    L+  +                 +   V  +              Y +       
Sbjct: 59  DESGLSLLADLPSGISC-----------IMLSVHDSAAIVEKALESGARGYLTKRCSPDE 107

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +   G  +  D   ++            + +       +LT RE +    ++ 
Sbjct: 108 LIQAVRTVASGGCYLTPDLTMKLV-----------TPNRSRQPIEQLTKRERQISEMLAL 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G     +AV LG+S  TV+ + A+ M K   K      
Sbjct: 157 GLDVKAVAVRLGLSHKTVHVHRANAMDKLNVKNNVELA 194


>gi|254294043|ref|YP_003060066.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042574|gb|ACT59369.1| two component transcriptional regulator, LuxR family [Hirschia
           baltica ATCC 49814]
          Length = 220

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 22/215 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA    L+  +  T    ++ E         ++  L     LD  +   
Sbjct: 18  IVDDHPLFRDALAAAASLNPNIRSTYFAGSVLEACEC-----LKSSLPDLVLLDLNLKDT 72

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +      +   ++                     A     Y   + D+  ++
Sbjct: 73  TGLESLITLQAQVPSQRVAIV--------TATEDREIIERAMALGAVGYIPKSLDMNSLK 124

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L         +    I                   +   LT  +   L+ +  G 
Sbjct: 125 GAISDLLSGENWTPPEFQQAI---------EPSPASEIASRLASLTPAQRRVLSGLKSGL 175

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            + +IA  +GIS  TV  ++ +I RK    +R+ A
Sbjct: 176 LNKQIAYEMGISEATVKAHMTAIFRKLGVASRTQA 210


>gi|326444187|ref|ZP_08218921.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 221

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +D    + ++ +   ++ L  +            +  L                 
Sbjct: 1   MLVVDDDPLVRAGLALMLGGAEDLEIVGEGADGAEVQELVDRLA---------------P 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  + +         +                 +    FH   + +         
Sbjct: 46  DVVLMDIRMPAVDGLTATERLRARPGAPE--------VVVLTTFHADEQVLRALRAGAAG 97

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKDFEL 186
           +       A I   +  +     ++      ++    +  A  A           +   L
Sbjct: 98  FVLKDTPPAEIVDAVRRVAAGDPVLSPAVTRQLMSHVVGTARDAAGDPRRRSALARLETL 157

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            GRE E    +  G+++ EI+  L IS  TV  +++ ++ K     R           ++
Sbjct: 158 AGREREVALAVGRGQSNAEISASLYISVPTVKTHVSRVLAKLGLNNRVQIALLVHDAELL 217


>gi|289642055|ref|ZP_06474208.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508128|gb|EFD29074.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 259

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 25/242 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ------KLDSIV 78
           H+  R     R++  +        M  +         +    D           + D  +
Sbjct: 9   HVAARPTRTIRVLLAESCDVVRTGMRVILNREPDITVVRDVADSADLLLAAQEFRPDICM 68

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                        + +        +RP  +      +              Y       A
Sbjct: 69  VDRDLDGADVLPLIRKLSTALPD-RRPHIIITARRGSDDLAAEALRLGVRGYLIKNIPPA 127

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLL-AAYQANMFKSYDVHWGK--------------- 182
            +   +         +      ++    A   ++   +                      
Sbjct: 128 DLLDAIRATAAGHITLAPAVANQLAACWAGRTSSTGPTGGGDTAPSVPSAPVPTVGTAMK 187

Query: 183 --DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  LT R+ E L  +++G ++ EIA  L ++  TV +++ +++R+   + R+    YA
Sbjct: 188 GLDIHLTQRQREVLELVADGLSNAEIAARLFVTEATVKSHLTAVLRRLDLRDRTQLAIYA 247

Query: 241 VR 242
            R
Sbjct: 248 HR 249


>gi|258620431|ref|ZP_05715469.1| Transcriptional regulator [Vibrio mimicus VM573]
 gi|258625644|ref|ZP_05720523.1| Transcriptional regulator [Vibrio mimicus VM603]
 gi|262170370|ref|ZP_06038048.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
 gi|258581882|gb|EEW06752.1| Transcriptional regulator [Vibrio mimicus VM603]
 gi|258587310|gb|EEW12021.1| Transcriptional regulator [Vibrio mimicus VM573]
 gi|261891446|gb|EEY37432.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLHLLNKESE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L +      +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHLLVD-----GFVGNDLAE------KVAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|255535468|ref|YP_003095839.1| Regulatory protein, LuxR:Response regulator receiver
           [Flavobacteriaceae bacterium 3519-10]
 gi|255341664|gb|ACU07777.1| Regulatory protein, LuxR:Response regulator receiver
           [Flavobacteriaceae bacterium 3519-10]
          Length = 221

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 69/232 (29%), Gaps = 29/232 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      +N+V+  +       +  L +    +  +   +    +   +           
Sbjct: 1   MKLMETNINVVIIDDHNIIIEGLEMLLSLRKEINIVQTYNDANDFISDLRN--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
               +  +     +D ++ +   ++  + +          V++           T+ + +
Sbjct: 52  ----QKYIPHIVLMDLMMPTINGYEAAKILKKEF-----PVVRIIILSMDCASKTIYDLV 102

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y S       +   L  +         +    +        +         
Sbjct: 103 EKI--GVEGYLSKKISAKELYFALKQVDSGYVHFSDEAAKALDSFREKIISY-------- 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               +L+ RE + +  +  G T+ EIA  L IS +TV  +  +I RKT T +
Sbjct: 153 -PSIKLSEREKQIVKLMFAGFTNTEIAAALFISISTVETHRKNIYRKTETHS 203


>gi|256390216|ref|YP_003111780.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356442|gb|ACU69939.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 203

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   V+    +  +T    G         D      +D  +   
Sbjct: 1   MTSILVCDDSPLARETLRRAVATVPGVDKVTTANSGEEVLRRWTADRSDLVLMDVRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + VR +  ++ +           +   +   L       A     Y       A +R
Sbjct: 61  GGVETVRRLLSNDPN--------ARVIMLTMAEDLDGVALAVATGARGYLHKDASRAELR 112

Query: 142 IGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +          +   RL                     G    LT RE++ L  +S G
Sbjct: 113 ATVSQALADPTWRLAPRRLR----------------PAEIGAVPTLTAREIQVLEGMSHG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++ EI   L +S +TV  +   + +K     R+ A+A   R  +V
Sbjct: 157 RSNAEIGRDLFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202


>gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1067

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 120  ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---------RIILRDRLWEIGLLAAYQA 170
                      Y  +  D     + L+                      L  + LL   + 
Sbjct: 932  RALSLAEPRGYLRVFLDEGAPLLTLLYRLRDELRKQRTTENPAPASRYLDRLILLCKQEQ 991

Query: 171  NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
             M             L+ RE E L  ISEG+++ EIA  L I+ +TV ++I +I  K   
Sbjct: 992  QMGVPSGEQAELVESLSERECEVLRHISEGRSNREIARQLVIALSTVKSHIRAIYAKLGV 1051

Query: 231  KTRSGAIAYAVRNNIV 246
            K+R+ A+  A R N++
Sbjct: 1052 KSRTQALIQARRLNLL 1067


>gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 518

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 22/253 (8%)

Query: 1   MNFEIQQVNIVLNREDEQ------RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE 54
           M+ E ++   +  R+ E+      R + V+     +D    +   D  V+    +    +
Sbjct: 254 MDLEPRKQAELALRQSEECFAKAFRMAPVATAIVTADRFELLDVNDAFVAMAGHVRD--D 311

Query: 55  YVGASHFLL-VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
            +G S   + +  +    Q++DS ++ D           +        ++       PV 
Sbjct: 312 LLGKSADEIGLWAERGARQRIDSALARDGNVRNADVQIRTG----DGDVRDCVVSAEPV- 366

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                      G D    +L     R R  + L++     +     +   L+        
Sbjct: 367 --------AIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRR 418

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +      +  +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R
Sbjct: 419 ANAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSR 478

Query: 234 SGAIAYAVRNNIV 246
             AI +A    IV
Sbjct: 479 GEAIVWARERGIV 491


>gi|126727851|ref|ZP_01743680.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126702873|gb|EBA01977.1| two component transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 232

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 29/230 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT-EYVGASHFLLVRWDLFQEQKLDSIV 78
              +   P   D L          S       +  + + A+   L    L     LD  +
Sbjct: 21  VLIIDDHPLFCDALKL-----TLGSIANFNKIVAVDNLQAAISELSTSPLPSLILLDLNL 75

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L   + L        ++             +   IT      + Y       +
Sbjct: 76  PDASG--LNGLLKLKRVADNCPII---IVSSMTDTALIEGAIT---AGASGYVPKHSHRS 127

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY---DVHWGKDFELTGREVECLT 195
             +  +            D + E G    +      S    D    +   LT ++   L 
Sbjct: 128 VFKQAI------------DMIKEGGQFKPHGFTENVSTTVQDTVISRLASLTNQQARILE 175

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I EGK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A     
Sbjct: 176 LICEGKLNKQIAFELTIAETTVKAHVTAIMRKLQVHSRTQAVLVAQEAKY 225


>gi|111026189|ref|YP_708472.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|40787202|gb|AAR90120.1| response regulator [Rhodococcus sp. DK17]
 gi|110825032|gb|ABH00314.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++V+  +     S +  +   +     +            +                  
Sbjct: 2   ISVVVCDDHGIIRSGIRRILETTTDFHLVASAPTGELLLQAVRDFA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  ++     DL+         +   +      +   ++              
Sbjct: 48  -PELVVLDIRLTDCNGLDLLE--------QISAISPETRVVMLSMYGAKGYVEKAKTRGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +      +                      + +      L+
Sbjct: 99  RGYITKECLDEELVSVLYAVMKDEGFVSFRADT------TEPGGPESLLEANIDS---LS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    ++
Sbjct: 150 SRELDVLKMIASGLTNTEIAEELTVSPRTVESHRASIQRKLLIRTRAELARVARDAGLL 208


>gi|307726319|ref|YP_003909532.1| regulatory protein LuxR [Burkholderia sp. CCGE1003]
 gi|307586844|gb|ADN60241.1| regulatory protein LuxR [Burkholderia sp. CCGE1003]
          Length = 332

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            R+ L++ ++           +      +G + F          +K   +++S      +
Sbjct: 86  RRAPLISPLVRFGSAQDRMEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWL 145

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRY------- 130
                    +    +   +    P      +                G+ +         
Sbjct: 146 TRYFRERYFELDPRVALASPTGMPFLWNTVDMRADLPRAQMRSERLGGLIDMLEETGRKS 205

Query: 131 ---CSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS-------YDV 178
                +      +   L         R +    + E  + A        +          
Sbjct: 206 GILTQMPLPEPDLSASLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTP 265

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+  +   L  + +G+   EIA  LG+S + V+ ++  + +    + R   I 
Sbjct: 266 AQQHRVTLSELQHAVLKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLIN 325

Query: 239 YA 240
            A
Sbjct: 326 VA 327


>gi|89092860|ref|ZP_01165812.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
 gi|89082885|gb|EAR62105.1| DNA-binding response regulator, LuxR family protein
           [Oceanospirillum sp. MED92]
          Length = 211

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDC-TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D             +       +    G     L + +      +D  +      
Sbjct: 3   ILITDDHSVVRQGYASVLPTVIDPCEIIEASSGEQAAELYQSEKPDIVIMDINLPGISGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +  S+        +    +F  ++                Y + +     +   +
Sbjct: 63  EAATRILESD--------RDAKIMFFSMYDESLVVKQALDAGAMGYITKSGSPKTLLEAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I  D + ++ L                    ELT RE E    ++ G++S 
Sbjct: 115 TRISKGEIFIEYDLVMKLALNNQNVTEGLLR---------ELTQREFEVFVMLARGQSSQ 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L ++  TV+NYI +I  K    + +  +  AV   +V
Sbjct: 166 IIADTLELNIKTVSNYITTIKSKLQISSTAEIVHLAVEAGVV 207


>gi|269929119|ref|YP_003321440.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788476|gb|ACZ40618.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 209

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 60/217 (27%), Gaps = 27/217 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R    +  P     LA ++     ++    +  +                 +    D I
Sbjct: 2   LRVLVAAAYPMTRAGLAALLAETPEIAVAATVEDVA----------TAVAEMEPAAPDVI 51

Query: 78  V--SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +    D   + +  +A    +     +            T                    
Sbjct: 52  LLAPGDDVEEWLDDLARLAGESGAPPVLLL-------VDTPELAPEALRAGVAGLLLRDA 104

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D   I   L        ++    +  +   AA                  LT RE E L 
Sbjct: 105 DPDEIVAALRAAGQGLTVLDPRAVPFLTTDAA--------PRASPDAGEPLTPREREILQ 156

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            I++G  +  IA+ LGIS +TV  ++ SI+ K    +
Sbjct: 157 LIAQGLPNKSIALELGISEHTVKFHVGSILDKLGASS 193


>gi|302387016|ref|YP_003822838.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
 gi|302197644|gb|ADL05215.1| two component transcriptional regulator, LuxR family [Clostridium
           saccharolyticum WM1]
          Length = 213

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 13/187 (6%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L   +                 +L       +  +    +                 +  
Sbjct: 37  LQALEEAATLAPQVAFIDIEMPELDGLAFAEKLLEIQPEVMIAFIT----SWN-QYAVQA 91

Query: 123 PAGMDNRYCSLTFDVARIRIG---LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                  Y        R       +     +   +         +L+ Y           
Sbjct: 92  FELNALDYVMKPIKEERFLKLAEKIHTEINRKEQLSYAE----QVLSLYGRQKVAPAAD- 146

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  LTGRE + LT +++G T  EIA  L +S + +  ++ASI  K     +  A+  
Sbjct: 147 HMPDIPLTGRETQVLTLLAQGLTQREIAEELFLSVSCIKKHLASIYSKLNVNNKISAVQK 206

Query: 240 AVRNNIV 246
           A  +NI+
Sbjct: 207 ARESNIL 213


>gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 204

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 29/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + LA ++ L+  +    ++       G       R        LD  + 
Sbjct: 7   VLLAEDQSMVREALAALLGLEDDIEVVAQVAR-----GDEVVAAARAHGVDVALLDIEMP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +    +           L     +    F       +      + +       A+
Sbjct: 62  GCTGIEAAARLHRE--------LPAVKLVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQ 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R+I                               LT RE E L   ++
Sbjct: 114 LAAAVRKVLAGERVIDPTLAAA----------------ALAEGANPLTDREREVLRAAAD 157

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A     +
Sbjct: 158 GSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTAREKGWL 204


>gi|260459742|ref|ZP_05807996.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034544|gb|EEW35801.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 227

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 18/223 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   +   P   + L   + +      T+   ++TE +     LL     F    LD
Sbjct: 6   DRARFLIIDDHPLFREALHSAVQMAYPEVDTVEARSITEALD----LLADAKPFDLALLD 61

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +     FD +      +    Y  L          +          +     +   + 
Sbjct: 62  LSMPDVHGFDGL-----LQLRTRYPRLPVVIVSG---YEEPRIISEALSYGAAGFIPKSA 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             + +   +  +      + +    +                    +  +LT +++  L 
Sbjct: 114 RKSDLAAAIRSVMDGAIYVPQTYEGQPA------DADSSDRADMVQRLSKLTPQQLRVLQ 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +G  + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 168 MLRQGLLNKQIAYELQVGETTVKAHVSEILRKLNVYSRTQAVI 210


>gi|170696363|ref|ZP_02887492.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170138691|gb|EDT06890.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 274

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 31/223 (13%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            + + LAR             +                      Q  D  V      D +
Sbjct: 2   RQINRLARFNEAQDWRQAERTLKR--------------------QWPDLFVID--WQDWM 39

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               +     +Y  L+           +                    D   I     ++
Sbjct: 40  SVKDVRHLLSHYPDLRIA---VLTDRISPKAVSELMDEGVRGVVPRETDPCLIVRAFEMV 96

Query: 148 FPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
              G  +    L     L    A    +              L+ R+ + +  +  G T+
Sbjct: 97  LLGGHYVPSGALPLKPPLPADTAIRPFDEKSPPPRRVRLSNGLSPRQQQIMRCVHMGSTN 156

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 157 KMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 197


>gi|113868111|ref|YP_726600.1| response regulator [Ralstonia eutropha H16]
 gi|113526887|emb|CAJ93232.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 192

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 14/198 (7%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               ++       A   L +         +D  + S+   DLVR +             R
Sbjct: 4   LHEDLHVCCAAGSAEEALALMACQPDVAVVDLSLHSNSGLDLVRMLRQH--------YPR 55

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              L   +               N Y         I   +  +      +         +
Sbjct: 56  LAILVLSMHDETLFAERALRAGANGYLMKLEATEHIVNAIREVLAGNVYLS------AAM 109

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                  +        G    L+ RE E L  I  G ++ +IA  L  S  T+  + A+I
Sbjct: 110 HDKLARALKAPQRSRAGSIASLSEREFEVLHLIGLGFSTRQIAGKLNRSVKTIEAHQANI 169

Query: 225 MRKTATKTRSGAIAYAVR 242
             K         + +A++
Sbjct: 170 KEKLDIPNGKELMRFAIQ 187


>gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 391

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 123 PAGMDNRYCSLTFDVARIR---IGLMLLFPKGRIILRDRLWEIGLLAAYQANMF------ 173
           P G+ +      +     R     ++   P     +  RL+   +     A         
Sbjct: 258 PFGLASLVIVPVYVPTEGRMIGGVVLDRGPGRFFAVDRRLFPALMKFGQSAGELLLKWIK 317

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G    L+ RE+E L  +++G ++ E A  L +S  TV +YI+S +RK   K R
Sbjct: 318 APKKEWEGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNR 377

Query: 234 SGAIAYAVRNNIV 246
           + A+A A+R  ++
Sbjct: 378 TEAVAKALRLGLI 390


>gi|167034128|ref|YP_001669359.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166860616|gb|ABY99023.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 212

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIVL  +        + L      L ++           R+                  
Sbjct: 1   MNIVLVDDHAVVRQGYASLLRAVLPLMQVREAASGEEALARVQEQV-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L +   LF  +   LP          
Sbjct: 47  -PNLVIMDFGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      I +    ++                   +   +T
Sbjct: 98  SGYLTKNSAPEVLIEAVQRVMAGHAYIEQPLATQLA--------CTSQQSASDPRLQRMT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E  T +++G     IA  L IS  TV+N++  +  K    + +  +   +   +V
Sbjct: 150 QRELEIFTMLAKGTPMRVIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVHLGIDLGVV 208


>gi|329957350|ref|ZP_08297870.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328523063|gb|EGF50166.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 215

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 26/228 (11%)

Query: 25  HLPTRSDLLARMIPLDCTV-SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   +          T   G     L++  +F     D  +     
Sbjct: 4   DIVLIDDHSLVLEGLKTLLRDIAGVNSVCTVTNGTELLSLIKSRIFHIYITDLELPDIDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+L+  +  +          +   + C +   +           N     +     +R  
Sbjct: 64  FELMHSIKENN--------PQAKVIVCTMHEEIWIVNKLRHPDINAVVFKSSGTEALREA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-----TGREVECLTWIS 198
           +  +                     +             + EL     T RE++ L  I+
Sbjct: 116 VCAVMVDENYY------------CQRYQQLYKEKNRPDDETELPDMLPTSRELDVLKAIA 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G ++ EI+  L IS NTV  +  ++M K A +  +  +  A+    +
Sbjct: 164 QGMSTHEISRHLFISENTVEWHRKNLMLKFAARNATDLVIKALTKGYL 211


>gi|238752915|ref|ZP_04614378.1| Nitrate/nitrite response regulator protein narL [Yersinia rohdei
           ATCC 43380]
 gi|238708862|gb|EEQ01117.1| Nitrate/nitrite response regulator protein narL [Yersinia rohdei
           ATCC 43380]
          Length = 216

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 21/236 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           ++ ++      +   P     + ++I +   +S            G    +L        
Sbjct: 1   MSEQEAATILLIDDHPMLRHGIKQLISMAPGLSIAGEA-----CNGEQGIILATRIDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +                 +   V     + I+      + Y 
Sbjct: 56  IMLDLNMPGMNGLETLDRLRQQPLS--------GRVVVFTVSDHQDDVISALKRGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
               D   + + L        ++    +  +        +  +       +D   LT RE
Sbjct: 108 LKDMDPEDLLVSLYDAAAGQMVLSDALMSILA-------SNLRENRPDTERDINTLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  + V++ ++
Sbjct: 161 RDILKLIAKGLPNKTIAKKLLIAESTVKVHVKHLLKKMKLKSRVEAAVWVVQDKVL 216


>gi|239820081|ref|YP_002947266.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239804934|gb|ACS22000.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 206

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 15/179 (8%)

Query: 69  FQEQKLDSIVSS-DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             E   D +V+      +L+   +  ++       + P  +         E +   A   
Sbjct: 40  PGEGMADVVVADHACALNLLASASAVDQPGVAGGFRMPRVIVLTRRDKEGEVMRAIASGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D A +   +  +   G +              Y     K+   H       T
Sbjct: 100 HGYVRQDADPAELMDAIRHVARGGSL--------------YLCKGTKALIRHGKPCVGFT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L ++ +G  +  IA  L IS NTV  ++A I  K    +R+   A A +  +V
Sbjct: 146 AREEDVLRYLVKGDCNKGIARELDISANTVKAHVARICEKLHVGSRAQVAAKATQRGLV 204


>gi|311693703|gb|ADP96576.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 221

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 71/235 (30%), Gaps = 30/235 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +    +++   A  + +D   +    + +                 
Sbjct: 4   TIIVADDHPLFRAALKQAVSQAVPDAETVEVDSIKALQAAVES--------------HPD 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     F  +  + +  +     V+             L           +
Sbjct: 50  ADLVLLDLNMPGAHGFSGL--VFMRGQYPGLPVVVVSGSE------ELQVMRRSIDYGAS 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I   +  +      + +         A     M         K   LT 
Sbjct: 102 GFIPKSAPLPTITEAIQAVLEGDVWLPQGV-------ADKIERMHSDATDFSEKLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++   L  ++EG  + +IA  L +S  T+  +I ++ RK   + R+ A+  A++ 
Sbjct: 155 QQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKLGVRNRTQAV-IAIQQ 208


>gi|310766428|gb|ADP11378.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrpY protein [Erwinia sp. Ejp617]
          Length = 213

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +  + L  +            +                 +
Sbjct: 5   IRLMVADDHVIMREGLKQIFSLDERLVVVAEAGNGTQVMEGLR---------------VE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DLV  + L           +   L   ++              
Sbjct: 50  PVDLLLLDMSMPGVCGEDLVTRIHLQ--------YPKLPILILTMYSEPQIARRVLKCGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I    L E  + A Y             +   LT
Sbjct: 102 LGYITKDNDPETLLAAIHRVARGQRFIDH-VLAEQIVFAEYTHA----GGAMHER---LT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+  + IA  L IS  TV+ + A +M K    T +  + YA+ + ++
Sbjct: 154 AREMQIMLMLARGRGVNHIAEALAISNKTVSTHKARLMEKMMFTTNADIVKYAISHCLI 212


>gi|197106265|ref|YP_002131642.1| response regulator [Phenylobacterium zucineum HLK1]
 gi|196479685|gb|ACG79213.1| response regulator [Phenylobacterium zucineum HLK1]
          Length = 201

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 57/218 (26%), Gaps = 32/218 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVR---------WDLFQEQKLDSIVSSDWPFDL 86
           +  +D   +    +  L +  G                          D  +      +L
Sbjct: 6   VHVIDDDEAMRQSLQFLLDTAGFQARTYESAVQFLEGIEILEPGCIVTDVRMPEMNGLEL 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           VR +      +          +       +P  +         +    FD   +   +  
Sbjct: 66  VRRLRTRGVTQ--------PVIVITGHGDVPLAVEAMKAGVADFLEKPFDDEALLSAVRA 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                    R         +                   L+ RE + L  +  GK +  I
Sbjct: 118 ALDTRVQDDRQDAERQKFESMLAG---------------LSPREQDVLRGVVAGKPNKII 162

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  LGIS  TV  Y A++M KT   + S  +  A+   
Sbjct: 163 AFELGISPRTVEVYRANVMTKTGASSLSELVRMALLAG 200


>gi|115525914|ref|YP_782825.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115519861|gb|ABJ07845.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 210

 Score = 94.6 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 29/214 (13%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFD 85
            +  +D   +    +  +    G         D               LD  +      D
Sbjct: 9   EIFVVDDDPAVRETLSIVLSAAGYQSICFADGDALLAVARTRCPACILLDVHIPGRSGLD 68

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +   +      +     +        +   +         +    F  + I     
Sbjct: 69  ILEELHAEDYP--APIFMISGKG------DIAMAVNAIKNGALDFIEKPFRGSEI----- 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      I          LA    ++             LT RE E L   S G T+ E
Sbjct: 116 -VTRVEEAIEAFTRRRAQGLAPKVPSLNFPGREP------LTMREREVLDLFSSGNTNKE 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               LGIS  T+  + A+IM+K   K  +  +  
Sbjct: 169 AGRQLGISPRTIEYHRANIMKKLGAKNATDLVRI 202


>gi|324992362|gb|EGC24283.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
          Length = 199

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G      +  +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLSSETVDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIQTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEQGWL 199


>gi|291459358|ref|ZP_06598748.1| putative nitrate/nitrite response regulator protein NarL
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417957|gb|EFE91676.1| putative nitrate/nitrite response regulator protein NarL
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 220

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 26/228 (11%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               +   P     L  +I +       +    + E +       V+ +      +D  +
Sbjct: 1   MFLVLDDHPVSRMGLKAVIHMTRPEEEVIEAGTVQEAMDC-----VQREKIDLAFVDLKL 55

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           + +  FD +R +   + +           +         +     A   + Y      + 
Sbjct: 56  NGESGFDFLRKVHERKPEI--------RTILITSSSRDSDFREAKALGVDAYLLKDAFID 107

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L  +   G+           L+    +   K           LT RE E    + 
Sbjct: 108 EIVFCLKSVERGGKFYS------AALVDPRLSEEEKKLG-------TLTEREREVYELMC 154

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T+ EI+  L I+  T   ++++I+ K  +K R  A+  + +   +
Sbjct: 155 QGYTNLEISARLFITEGTAKRHVSNILSKLGSKNRVEAVIQSGQKGYL 202


>gi|269962474|ref|ZP_06176823.1| Transcriptional regulator [Vibrio harveyi 1DA3]
 gi|269832770|gb|EEZ86880.1| Transcriptional regulator [Vibrio harveyi 1DA3]
          Length = 211

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 19/171 (11%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +          V+                     +    
Sbjct: 52  PDLVLLDLKMPGANGMSGLIHLRAE--YPDLPVV------VVSASEEPSVVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               + +    K   LT 
Sbjct: 104 GFIPKSSDMRELVNALNQVLNGDPYFPEGLITN-----------NAACNDLAEKIAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|238854471|ref|ZP_04644810.1| Two-component response regulator [Lactobacillus jensenii 269-3]
 gi|260665481|ref|ZP_05866328.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934541|ref|ZP_06339793.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1]
 gi|313471834|ref|ZP_07812326.1| Two-component response regulator [Lactobacillus jensenii 1153]
 gi|238832898|gb|EEQ25196.1| Two-component response regulator [Lactobacillus jensenii 269-3]
 gi|239530121|gb|EEQ69122.1| Two-component response regulator [Lactobacillus jensenii 1153]
 gi|260560749|gb|EEX26726.1| two-component system response regulator [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301379|gb|EFA93671.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1]
          Length = 201

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 39/238 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  + E   S +  L    D    +           ++  L                
Sbjct: 3   RLYLAEDQELLNSALKMLLDLEDDFEVVGTSLTGEDVAKQIMDL---------------K 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      ++ + +                 +    F          A   +
Sbjct: 48  VDVALLDIEMPKQSGLEIAKELRQQNYP--------GKIIILTTFARANYFKEALAQKVD 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +     +     +                  V    D  LT 
Sbjct: 100 GYLLKDSPSDSLVKAIRAILEGNTVFDPKLV----------------SGVLNEVDNPLTK 143

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  + +  T+ E+A  L +S  TV NYI+SI+ KT T +R  A+  A     +
Sbjct: 144 RELEILKMLEQVATTKELAQRLFLSEGTVRNYISSILSKTGTASRLEALNLARDKGWI 201


>gi|121609139|ref|YP_996946.1| two component LuxR family transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gi|121553779|gb|ABM57928.1| two component transcriptional regulator, LuxR family
           [Verminephrobacter eiseniae EF01-2]
          Length = 209

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +      +  +        +      + +                
Sbjct: 2   IHVVLCDDHAVLRRGIRDTLAEAPEIEVTAEAGNSCELREVLRSAA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +  +  D           L   ++      +       
Sbjct: 48  -CDVLLLDLSMPGRSGLDVLASLRETHGDI--------KVLVLSMYQEDQYALRCLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    + +  +    +            +          L+
Sbjct: 99  QGYANKAGDPLELIAAVRTVMQGRKYLTAEVAQLLA--------DSLAQPEPQAPHSALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G+   +IA  L +S  TV+ Y + ++ K      +    YA+RN +V
Sbjct: 151 ERELQTLLKIASGRRLSDIAEELMLSPKTVSVYRSRVLEKLKLTNNAELTVYAIRNQLV 209


>gi|27382126|ref|NP_773655.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355296|dbj|BAC52280.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 220

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 73/240 (30%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +  +    A +     +      +                  
Sbjct: 1   MKVLIVDDHALIREALCAVLRQLKREAVIFEASSSRQAVDIVEE--------------HP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F ++R +          ++   +     V               
Sbjct: 47  DISLILLDINLPDRDGFSVLREL-RDSYPTIAIIILSSSNDQDTV-------KRAFKLGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFE 185
             +   T +   +   + L+F  G  I  + L +        +    +        +   
Sbjct: 99  LGFIPKTTEREVMLNAIELVFSGGIYIPSEILEDA------PSRRLANKSTTPDFLRGLG 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT R++E L  + +GK++  IA  L ++  TV N+I  +++  +  +R+ A+    +   
Sbjct: 153 LTDRQIEVLALLMKGKSNKIIAKTLNMAVPTVKNHITVVLKALSVTSRTEAVIKVGKMGW 212


>gi|196232039|ref|ZP_03130894.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196223761|gb|EDY18276.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 220

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 19/224 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGA----------SHFLLVRWDLFQEQKLDSIVSS 80
           DLL  ++  +      + + ++ E +G                          LD  +  
Sbjct: 2   DLLPSILIAEDDERTCILLQSMLESLGYPIVGTAGDGMEAVEKTLSLKPGAVLLDIGMPV 61

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +  R +                 +               A     +          
Sbjct: 62  LDGLEAARRILDQMLVPI---------VVLTGMSDDATLEAARALGVQAFLLKPLASKEQ 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
               +++        R     I  L+    +            + LT RE E L  ++EG
Sbjct: 113 LRAAIVIATTICDRQRADAERIDTLSTSLESTRVKTMPRALGSYGLTRRETEVLHLLAEG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           K + EI V LG+S  TV  ++  I+ K   K+R+ A        
Sbjct: 173 KANAEIGVELGLSPRTVEKHVEHILDKLGVKSRTAATRLVADAG 216


>gi|288918929|ref|ZP_06413272.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349681|gb|EFC83915.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 240

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 57/215 (26%), Gaps = 20/215 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       D L  ++     V+      +  + +G     LV         +D  
Sbjct: 30  IRVVIVDDHRIVLDGLVVLLDSMDGVTVVGDATSGEQAIG-----LVEGLRPDVVLMDIE 84

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +             +   +   ++                Y       
Sbjct: 85  MPGIGGVEATRRITT--------AYPQVAVVMLTMYGEDEFVFAALRAGARGYLLKGAQQ 136

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +   D        A      F           ELT RE + L  +
Sbjct: 137 EDVVRTVRAAARGDAVFGPDV-------AHRVLRAFTDPRPATKPFPELTDRERDVLGLL 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           + G  +  IA  LG++  TV N +++I+ K     
Sbjct: 190 ANGWPNGRIARHLGLTPKTVANNVSNILTKLHATD 224


>gi|237798778|ref|ZP_04587239.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021631|gb|EGI01688.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 208

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     + R  L     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVVAETDNGVDALQMAREHLPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  ++                   P   +    +         Y     D+  +  
Sbjct: 61  GLEVIARLSA----MTLPFKVLILTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L        +                 L+GRE+  L  ++ GKT
Sbjct: 113 AIKAVLSGYSYFPNQAL--------HTVRSSMGNASESDMVDRLSGREMMVLQQLARGKT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K    +    I  A RN +V
Sbjct: 165 NKEIADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGLV 208


>gi|330467590|ref|YP_004405333.1| two component LuxR family transcriptional regulator [Verrucosispora
           maris AB-18-032]
 gi|328810561|gb|AEB44733.1| two component transcriptional regulator, luxr family protein
           [Verrucosispora maris AB-18-032]
          Length = 239

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 55/190 (28%), Gaps = 10/190 (5%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              +L          +D  ++     D+V  +                 +          
Sbjct: 37  DAVVLTSLHRPHVVLVDWELAGPTTLDMVGALRTHA--------PESRIVVLSGRDDPRI 88

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSY 176
                A     Y S +     +   +  +  +   +           +    +    +  
Sbjct: 89  VPELLALGVRAYLSKSVTSDELLATIRSVSREEGRVHLILSAGRRPVVPGGGEFPRERGG 148

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE + L+  +E  ++ +IA  L IS  TV  ++  + +K    +R  A
Sbjct: 149 SRAAPHSVRLSEREHDVLSLAAEALSNSQIARRLYISEGTVKRHMRHVFKKLNAVSRIDA 208

Query: 237 IAYAVRNNIV 246
           +  A+   ++
Sbjct: 209 VNKAISAALI 218


>gi|294787163|ref|ZP_06752416.1| two-component system response regulator [Parascardovia denticolens
           F0305]
 gi|315227300|ref|ZP_07869087.1| two component system response regulator [Parascardovia denticolens
           DSM 10105]
 gi|294484519|gb|EFG32154.1| two-component system response regulator [Parascardovia denticolens
           F0305]
 gi|315119750|gb|EFT82883.1| two component system response regulator [Parascardovia denticolens
           DSM 10105]
          Length = 283

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 68/305 (22%), Gaps = 83/305 (27%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E + + + +  + E     V                         +  +   +G +  +
Sbjct: 1   MEAKTIRVAVVDDHEMFRKGV----------------------ISTIGNVFHVIGEAWSV 38

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +L  + K D ++                  K   +      L   V  +  +    
Sbjct: 39  ESAINLISQAKPDVVLLDVHLPGGQGGGGSEIILKSMPLAPHTFYLALSVSDSPTDVGAV 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLM------------------------------------- 145
                  Y + T +   +   +                                      
Sbjct: 99  IRAGARGYVTKTINAEDLIASIEQVAEGYAVFSPRLAGFVLTAFQGTDERPTPSGPFGQA 158

Query: 146 ------------LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG------------ 181
                       L      I             + Q    +                   
Sbjct: 159 GLTRQNQAGGPGLASAGSTIAGPSMTRRAQEPQSSQNGRGRPSGASPAFLDQDEDDFEDI 218

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE + +  I+ G T  E+A  L IS  TV  +++ ++RK     R     +A 
Sbjct: 219 SVDVLTSRERQVMQLIARGYTYKEVASELFISIKTVETHVSRVLRKLQLSNRGELALWAA 278

Query: 242 RNNIV 246
              IV
Sbjct: 279 HQRIV 283


>gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC
           11218]
          Length = 207

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +       D+  +  G+  +      + R    E  +          +  V      +LT
Sbjct: 90  SGVFFADDDIDALVKGMNKVLEDEMWLTRKLAQEYIM-----HYRAGAPAVTSQAYTKLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 145 RREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIWA 197


>gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
 gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972]
          Length = 223

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +       D+  +  G+  +      + R    E  +          +  V      +LT
Sbjct: 106 SGVFFADDDIDALVKGMNKVLEDEMWLTRKLAQEYIM-----HYRAGAPAVTSQAYTKLT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 161 RREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|116694520|ref|YP_728731.1| response regulator [Ralstonia eutropha H16]
 gi|113529019|emb|CAJ95366.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 219

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 37/245 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+       + L  +       +  + +    L               +  +        
Sbjct: 1   MSRFSVPTRVALADDHAIVLEGLKQVLSGVGNLVLAGEAADGAQLLGLLERV-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +        V  +                 L            
Sbjct: 53  -------PTDLLVMDLGMPGVDGLAFVERLRTRH--------PALRILVLTGSAGAGMAH 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N Y   + D++ +   LM L      +               A          
Sbjct: 98  AAIDAGANGYLVKSGDISELVPALMALREGRNFV--------------AARATAPATAAP 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE++ L  I+ G T+ +IA  L IS  T   +  ++MRK      +  +AYA
Sbjct: 144 DGIATLTRRELQILMLIARGATAGDIAAQLDISPLTARKHRENLMRKLDLHNTAEVVAYA 203

Query: 241 VRNNI 245
            R  I
Sbjct: 204 ARQGI 208


>gi|192822729|gb|ACF06195.1| PanR [Pantoea sp. CWB304]
          Length = 246

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 66/227 (29%), Gaps = 28/227 (12%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    E+ G   +     +   E  ++ +V ++   D V     +       V+ +
Sbjct: 15  INDHLAEKIEFYGDVKYAYAIINK--ENPIEMMVLTNH-ADWVELYLKNNYQLVDPVIIK 71

Query: 105 PTELFCPVFHTLPENITPPAGMDN------------RYCSLTFDVARIRIGLMLLFPKG- 151
                                +                  +  D       L ++  +  
Sbjct: 72  CLSSVESFLWDEDIMFKAQYKLPMIFRMGKNYDIKSGCTFVLHDYNNNMALLSIMMGEHC 131

Query: 152 ------RIILRDRLWEIGLLAAY-----QANMFKSYDVHWGKDFEL-TGREVECLTWISE 199
                  I+      +  L++A+                  K   L T RE + L   S+
Sbjct: 132 REETKTSILNDRDRLQSLLISAHTKILSLYQEESEIIQQEKKKPGLLTSRENDVLYLASQ 191

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT  EIA  L +   TV  ++A++++K        AI   +   ++
Sbjct: 192 GKTYSEIACSLKVKEVTVKFHMANVVKKLGVMNAKHAINLGIELKLI 238


>gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus
           AQ3810]
 gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 217

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               + RD L ++        N     +     + ELT RE++ L+ + +G ++ +IA  
Sbjct: 124 GENWLSRDILNQLIGHLLSLNNTVGELETKL--EMELTRREMQVLSALCQGGSNLDIADS 181

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S +TV +++ SI RK   K R  AI +A RN
Sbjct: 182 LFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|194367747|ref|YP_002030357.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194350551|gb|ACF53674.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 221

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L  + +      +D  +     
Sbjct: 9   DHPLFREALRGAVQRVIPGVQLFE-----ADSVEALYALADQHNDADLVLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+ +  + +        V+         V     +           +   + D   I   
Sbjct: 64  FNAL--VHMRSLHPQLPVVVVSAREEATVMRRALD------HGALGFIPKSADSDTIGHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +         +        A               +  ELT ++   L  +  G+ +
Sbjct: 116 LGTILDGETWAPPE--------AHNVPPTGSEEREVGQRLRELTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  L +S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|320325633|gb|EFW81695.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 208

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 26/221 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGA----------SHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           ++ +D      + +  L E  G               L R  L     LD  +      +
Sbjct: 4   VLIVDDHPVIRLAVRMLMERHGYEVIAETDNDVDALQLAREHLPDIVILDIGIPKLDGLE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  ++                   P   +    +         Y     D+  +   + 
Sbjct: 64  VIARLSA----MTLPFKVLILTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLSAIK 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +           L        +                 L+GRE+  L  ++ GKT+ E
Sbjct: 116 AVLSGYSYFPNQAL--------HTVRSSMGNASESDMVDRLSGREMMVLQQLARGKTNKE 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  + +S  TV+ Y   ++ K    +    I  A RN +V
Sbjct: 168 IADGMFLSNKTVSTYKTRLLLKLNAHSLVDLIELAQRNGLV 208


>gi|225377710|ref|ZP_03754931.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM
           16841]
 gi|225210459|gb|EEG92813.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM
           16841]
          Length = 186

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 63/208 (30%), Gaps = 29/208 (13%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
                S      ++ +     ++++ +        +D  + +    D +           
Sbjct: 4   ALSDYSEIETFDSINDVSQLDNYIVSKKP--DIILMDINLKNISSEDGLELAKQILSCYP 61

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
              +   +    PV+ +    I         + +   +  ++   L  +           
Sbjct: 62  EQRVVILSGYDLPVYRSEGRKI-----GAKGFVNKNIEPEKLISILSKIMQGILYFD--- 113

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             EI  +                    LT  E + +  I+EG+   +IA  L IS  T++
Sbjct: 114 -REIPFIEG------------------LTDSEKQIIQLIAEGQKRKDIASTLYISERTLS 154

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N++  I  K    +   A+  A++   +
Sbjct: 155 NHLQHIFEKLDVTSAVEAVTKAIQLGYI 182


>gi|89900331|ref|YP_522802.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345068|gb|ABD69271.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 230

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 33/237 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  + +     +  L             D T +    +                    
Sbjct: 4   VYLVDDHQIMREGLRALLEAKGHKVVGESADPTEALADLLRM----------------RP 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +   LD  +     F+L+  +          VL         +     +         + 
Sbjct: 48  EVLLLDLNLGERSGFELLAELQRRHLPTRCVVL--------TMSAQPRQVAEALRMGASG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y      V+ +   +       + +      E+  LA     +             L+ R
Sbjct: 100 YVLKGSAVSDLLSAVDAAVRGKKHLG----AEVADLALQVFTLKDE-----DPLSTLSPR 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + +  + +G +S +I   L +S  TV  Y + +M K   +   G +  AVR+ ++
Sbjct: 151 EQQIIIMVVKGASSSQIGTQLHLSPKTVATYRSRLMAKLGVRDVPGLVRLAVRHKLI 207


>gi|318061656|ref|ZP_07980377.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076898|ref|ZP_07984230.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 214

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 59/227 (25%), Gaps = 24/227 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T  V  L    + L R                     GA    + R        LD  + 
Sbjct: 12  TPRVRVLLADDEHLIRGALAALLALEDDLEVVAEAASGAEALAMARAKGPDVAVLDLQMP 71

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +   +          ++                           +   T    R
Sbjct: 72  DGDGVSVATSLRSELPGCRCLIV--------TSHGRPGHLKRALEVGVRGFVPKTVSAQR 123

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R +  +                   D     D  L+ RE E L + ++
Sbjct: 124 LAEIIRTVHAGSRYVDPELAA----------------DAIAAGDSPLSAREAEVLEYAAD 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G    EIA   G+S  TV NY++S + K   + R  A+  A     V
Sbjct: 168 GAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRGWV 214


>gi|323529462|ref|YP_004231614.1| Autoinducer-binding domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323386464|gb|ADX58554.1| Autoinducer-binding domain protein [Burkholderia sp. CCGE1001]
          Length = 332

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 60/242 (24%), Gaps = 29/242 (11%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            R+ +++ ++           +      +G + F          +K   +++S      +
Sbjct: 86  RRAPVISPLVRFGSAQDRIEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWL 145

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM---------------DNR--- 129
                    +    +   +    P      +                             
Sbjct: 146 TRYFRERYFELDPRVALASPTGLPFLWNTVDMRADLPRAQMRSERLGSLIDMLEATGRKS 205

Query: 130 --YCSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS-------YDV 178
                +      +   L         R +    + E  + A        +          
Sbjct: 206 GILTQMPLPEPELSASLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTP 265

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+  +   L  + +G+   EIA  LG+S + V+ ++  + +    + R   I 
Sbjct: 266 AQQHRVTLSELQHAVLKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLIN 325

Query: 239 YA 240
            A
Sbjct: 326 VA 327


>gi|134292770|ref|YP_001116506.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135927|gb|ABO57041.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 215

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 58/228 (25%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L  ++                   G +   L          LD  
Sbjct: 2   IRVILADDHAVMRDGLRHILETAGGFDIVGEA-----SDGDATLALAERHAADVLLLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL+R        K    L+        +                 Y +     
Sbjct: 57  MPGPTGIDLIRL-----LKKRAPSLRLL---VLTMHAETQYAARAFKAGATGYLTKDSAS 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +       +                       L+ RE++ +  I
Sbjct: 109 TALVEAVGKVAAGGVYVSPSAAESLA--------RTLRTPADLLPHERLSARELDVMRRI 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G+T   IA  L +S  TV+ Y   I+ K      +  + YAVR+ +
Sbjct: 161 VAGQTVTRIASELALSAKTVSTYKTRILEKMDLPHEAALVRYAVRHEL 208


>gi|308178660|ref|YP_003918066.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307746123|emb|CBT77095.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 201

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 62/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S ++ L    + +  +            +                  
Sbjct: 2   IRVLIADDQHLVRSALAALLNLEEGIQVVAECADGDEVVPALT---------------GY 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +           + LS              L    F              
Sbjct: 47  PVDVALLDIQMPRQDGLRTAAELKLSH--------PEVKVLILTTFDRPGYFRQAFESGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A +   +  +    +++   R               +S          LT
Sbjct: 99  HGFLVKDSPPAELIAAIRRVHSGDKVVDPQRA-------------MRSVGAEANP---LT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   + G    +IA  + +S  TV N++++ + KT T  R  A   A     +
Sbjct: 143 EREREILGLAAAGAPVSQIASGVHLSAGTVRNHLSNAIGKTNTANRIEAARRAREMGWI 201


>gi|302538500|ref|ZP_07290842.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. C]
 gi|302447395|gb|EFL19211.1| LOW QUALITY PROTEIN: two component system response regulator
           [Streptomyces sp. C]
          Length = 210

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 2/131 (1%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--GLLA 166
               F      +         +   + +   +  G+  +      +       +   L A
Sbjct: 80  MLTTFGEDEYILRALGEGAAGFLIKSGEPEELIAGVRAVADGAAYLSPKVAARVVAHLAA 139

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                          K   LTGRE E L ++  G ++ ++A  LG++  TV  +++SI+ 
Sbjct: 140 GGAGAAAARRSAARAKVEALTGREREVLGYLGSGFSNGQVARRLGLAEGTVKAHVSSILA 199

Query: 227 KTATKTRSGAI 237
           +     R+ A 
Sbjct: 200 RLGVDNRAAAA 210


>gi|309782710|ref|ZP_07677431.1| DNA-binding response regulator UhpA [Ralstonia sp. 5_7_47FAA]
 gi|308918488|gb|EFP64164.1| DNA-binding response regulator UhpA [Ralstonia sp. 5_7_47FAA]
          Length = 215

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V H+  R+                          G     LVR  
Sbjct: 2   IRVMIADDHAVMRDGVRHILERAGDFEVACEASD---------------GTQVVQLVRDH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +L+R +             R   L   +               
Sbjct: 47  QPQVIVLDLSMPGRSGLELLRQLHDDH--------PRVRVLVLTMHAEEQYVARAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +   G  +      ++       +               L+
Sbjct: 99  AGYLTKESAATELVTALQKVANGGTYVSPPMAEKLAHSLGEPSEEAAH--------TRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +  G+   EIA  L +S  T++ Y   +M K    + +  + YA+R+ +
Sbjct: 151 DREMEVYRRLVRGEPLTEIATSLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHRL 208


>gi|108758666|ref|YP_634280.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108462546|gb|ABF87731.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 218

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 64/239 (26%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +   + +  L      +  +                    G     L    
Sbjct: 1   MRVLLTDDHQLVRAGLRALLESLGGVTVLAECGD---------------GHEALTLTDKL 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R        K     +           +            
Sbjct: 46  QPDVLLLDLSLPGLNGIEVARR-----VPKLSPSTRILILSMHT---SAEYVAQALRAGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      V  +++ L  ++     +       +        +  +       +   LT
Sbjct: 98  AGYLVKDSAVEELKVALESVWQGRTYLSPAISQTVVEGFLRITDDERPAANPLDR---LT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ E L  ISEG  +  IA  L +S  TV  +   +M + A       +  AVR  +V
Sbjct: 155 SRQREILQLISEGNGTRAIAERLQVSVKTVEAHRTQLMERLAIYDVPSLVRLAVRYGLV 213


>gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2]
 gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16]
 gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
 gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 74

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70


>gi|58616457|ref|YP_195586.1| hypothetical protein p2A60 [Azoarcus sp. EbN1]
 gi|56315919|emb|CAI10562.1| hypothetical protein p2A60 [Aromatoleum aromaticum EbN1]
          Length = 432

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 74/242 (30%), Gaps = 11/242 (4%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTM-------RMYALTEYVGASHFLLVR 65
           +R D+ R + ++ L        RM PL    S              L + + A   L + 
Sbjct: 194 SRIDKHRLALLALLAGDLAAARRMAPLLADASVWQSSSGFLLYAENLDDPLVADARLALV 253

Query: 66  WDLFQEQKLDSIVSSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
               +        +      L  R      +                +       +    
Sbjct: 254 EGSVRAVIPRLQDAICEANALNRRRRVARMQCLLAQAFDVARRRPQALETLERALLQAEP 313

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           G          +   +   L  L  +   +    L  +   A               +  
Sbjct: 314 GG--MLRVFADEPWHLHDLLQALADRKCAVSPGYLQNLRAAATR-TEPVAPKGPLQDEAM 370

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ +E + L  ++EG ++ E+A  L ++ NTV  ++  I  K   ++R+ A+A A+   
Sbjct: 371 RLSPKEGQILRRLAEGHSNKELARKLFVTENTVETHLRRIYGKLGIRSRTQAVARALELG 430

Query: 245 IV 246
           ++
Sbjct: 431 LI 432


>gi|26988367|ref|NP_743792.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida KT2440]
 gi|148549288|ref|YP_001269390.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|24983119|gb|AAN67256.1|AE016352_9 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148513346|gb|ABQ80206.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|313500198|gb|ADR61564.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 216

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R +    +        R++ +        R+    ++             
Sbjct: 6   ILIADDHPLFRGALRQAVTLGLGSDVRLVEVASIAELETRLSEKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +        Y  +                 +       +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLLRGQ-----YPQIPVVMVSAQ---EEAAVVVKSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I+  +  +             ++        ++             LT 
Sbjct: 104 GFIPKSSTLEVIQDAVRKVLDGEVWWPPQAFEKV--------DVSAEAKAASEGLASLTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALL 206


>gi|282861654|ref|ZP_06270718.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563470|gb|EFB69008.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 210

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 29/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R             LA ++ ++       ++ A     G                LD  +
Sbjct: 12  RLLLAEDQGMMRSALALLLGMEPDFEVVAQVEA-----GDRILEAALTSRPDVALLDIEL 66

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D    +           +     L    F                +      V 
Sbjct: 67  PGLSGLDAAAELREE--------VPDCRVLILTTFGRPGYLRRAMEAGAVGFLVKDGPVE 118

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     +I                +   +          LT RE + L    
Sbjct: 119 DLAKAVRRVLGGETVI----------------DPALAAAALGAGPSPLTARERDALNAAV 162

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T  +IA  L +S +TV NY++S + KT T+ R  A+  A +   +
Sbjct: 163 DGATVADIAAKLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGWL 210


>gi|302531645|ref|ZP_07283987.1| two component transcriptional regulator [Streptomyces sp. AA4]
 gi|302440540|gb|EFL12356.1| two component transcriptional regulator [Streptomyces sp. AA4]
          Length = 202

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +       +  + + +D +  +  +D        +                 +
Sbjct: 3   LRIVLAEDHALLRESLRTVFSLADDIEVVEAVDNGADALEAIRR---------------E 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++   +          V+          +              
Sbjct: 48  RPDGAMVDIDMPRMSGLEVAEAVHAEGIPCALLVV--------TSYGKPGYLHRAMRAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +       +   +  +   GR +  +   +   +                 +  LT
Sbjct: 100 RGFVTKNISPDALIDAVRKVCAGGRHVDPEIAADALAVG----------------ETPLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L     G    EI   L ++  TV NY++S + K     R  A   A     +
Sbjct: 144 ERELEVLRLSGAGLRPAEIGARLSLAEGTVRNYLSSTLTKLQVDNRVAAYRVAEEAGWL 202


>gi|152971901|ref|YP_001337010.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896480|ref|YP_002921218.1| DNA-binding transcriptional regulator CsgD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150956750|gb|ABR78780.1| putative bacterial regulatory protein, LuxR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548800|dbj|BAH65151.1| putative LuxR-family bacterial regulatory protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 217

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D +R+  G+  +    +      +        + A     +     ++  LT 
Sbjct: 108 GVFRHDDDESRLIEGVKAVLNGEQTAELSVM--------HPAMYAADHASTPVENSPLTE 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  +  G T+ +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 160 RECEILNELRCGATNLDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214


>gi|148560164|ref|YP_001258354.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC
           25840]
 gi|148371421|gb|ABQ61400.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC
           25840]
          Length = 213

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 14/220 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H     D       L   +S       + E         +  +      L   ++     
Sbjct: 2   HFIIADDHPLFRGALRQVLSGQSENVEIIEAGDFDTVRKLVGEKDDTDLLLLDLTMPGGT 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L   +AL        ++           H   E         + + S +  +  I   +
Sbjct: 62  GLSGLVALKALQPALPIIIVSATDDPATIHHALEL------GASGFISKSASMETIGEAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         D   +               +    +   LT ++   LT ++EG  + 
Sbjct: 116 GAVLAGDIWTPDDIDLD--------HPKDSEIESLIARLRTLTPQQTRVLTMLTEGLLNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 168 QIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|300742422|ref|ZP_07072443.1| two-component system response regulator [Rothia dentocariosa M567]
 gi|300381607|gb|EFJ78169.1| two-component system response regulator [Rothia dentocariosa M567]
          Length = 215

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 26/225 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----WDLFQEQKLDSIVSSDWPFDLVRC 89
           R++  +        +  L    G      V       D     + D  +           
Sbjct: 2   RIVIAEDQFLLRQGLENLFTRHGFEVVAAVDDGPSLTDAVLTHRPDVALIDIRMPPTFTD 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITP--PAGMDNRYCSL--TFDVARIRIGLM 145
             L    +    +     L    +             G+   Y      FD A     + 
Sbjct: 62  EGLRAAVQIRKQIPGQPVLILSQYVERLYVDELHMDGGLGTGYLLKDRVFDDAGFVRSVK 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   G ++  + L E+             +     +   LT RE+E LT ++EG ++ +
Sbjct: 122 AVAAGGVVVDPETLKELM-----------EHRAVQQRLERLTSRELEVLTLMAEGLSNGD 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKT------RSGAIAYAVRNN 244
           IA  L ++  TV  +I ++  K           R  A+ + +RN 
Sbjct: 171 IAEKLFVAEKTVAKHINTLFAKLDLPDTNSNARRVQAVLHLLRNG 215


>gi|146297802|ref|YP_001192393.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146152220|gb|ABQ03074.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 221

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 73/236 (30%), Gaps = 26/236 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I L  ++      ++ L  R D +  +           ++             L    
Sbjct: 5   IKIALVDDEVLFRKGIAFLLQREDNIEIVFEASNGEDLVNKL-------------LENEI 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  S              +    + +            
Sbjct: 52  KPDIIIMDLKMPVLNGVEATKIIRKS--------FPEIKIIALTSYDSKSFIANMIQVGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +  KG       L  I        N   + +  +     L+
Sbjct: 104 VAYLIKNTTPKDLIKTINEVNKKGFYYNESVLKTIQETIVSSKNSKGNLETSF-----LS 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE+E L  I + KT+ EIA  L +S  TV  +  +++ KT ++  +G + YA++N
Sbjct: 159 PREIEILQLICQQKTTSEIAEHLFLSPRTVEGHRNNLLLKTESRNIAGLVVYAIQN 214


>gi|298209071|ref|YP_003717250.1| Transcriptional regulator [Croceibacter atlanticus HTCC2559]
 gi|83848998|gb|EAP86867.1| Transcriptional regulator [Croceibacter atlanticus HTCC2559]
          Length = 207

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 62/238 (26%), Gaps = 34/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + +     +  L    + ++ +   +                      +VR  
Sbjct: 2   ITIAIAEDHQSLIDGIELLIKAEEDISLVGSANNGEELLK---------------IVRLK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D  +      +  R +                 +   +F              
Sbjct: 47  QPKVIIMDIRMPKLDGIEATRVIKKE--------FPHIKVIAFTMFDQEDAVKQMINAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  I   +  +                                  K   L+
Sbjct: 99  SGYILKHSPLEEILNAIRTVASGKDFYD-----------NSINLESIKDAESSNKKLLLS 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             E + L  + +GK+S EIA +   S +TV  +  +++RK     +   + YA+    
Sbjct: 148 KSERQILKMVGQGKSSLEIAQLRFTSVSTVEKHRKNMIRKLNLSGKGELLRYALEKKY 205


>gi|300744173|ref|ZP_07073192.1| DNA-binding response regulator [Rothia dentocariosa M567]
 gi|300379898|gb|EFJ76462.1| DNA-binding response regulator [Rothia dentocariosa M567]
          Length = 208

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 23/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           + LA ++ L+  +    ++       G      VR        LD 
Sbjct: 2   PLRILLADDQQMIREALAMILDLEIDLEVVKQVGR-----GDEVLPAVRETRPDVALLDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +A S              L    F              + +      
Sbjct: 57  EMPGATGIEAAAELARSGLT--SQAGAPVRSLILTTFRRPGYLRRALEAGASGFVVKDGT 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            +++   +       R++      E                  W     LTGRE E L  
Sbjct: 115 ASQLAQAVRRTAAGLRVVDSVLAEE----------------AKWQGSSPLTGRETEVLRA 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
                +  EIA +LG+S  TV N++++ M K     R  A+  A  N  +
Sbjct: 159 AETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRHEAVRIARDNGWL 208


>gi|316935769|ref|YP_004110751.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603483|gb|ADU46018.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 203

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 45/244 (18%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  + +  +D      +  L   +    R+                     A  FL  
Sbjct: 1   MPKGTVHVIDDDLAMRESIEFLLGSAGYEVRLYES------------------AQAFLDE 42

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
               F     D  +      DL++    +          +   L       +P  +    
Sbjct: 43  PEVEFGCILSDVRMPGIDGLDLLKRQKAAGS--------KLPVLIMTGHGDVPLAVEAMK 94

Query: 125 GMDNRYCSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              + +    FD  R+   + L     +          +I L                 +
Sbjct: 95  LGASDFIEKPFDDDRLIGLIELALKQAQEGARSEAVTQDIAL-----------------R 137

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE + +  +  G ++  IA    IS  T+  Y A++M K    + S  +  A+R
Sbjct: 138 IQSLSPRERQVMDGLVAGMSNKVIAREFDISPRTIEVYRANVMTKMQASSLSELVRMAMR 197

Query: 243 NNIV 246
             ++
Sbjct: 198 GGVI 201


>gi|297204156|ref|ZP_06921553.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714163|gb|EDY58197.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 232

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 3/192 (1%)

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
             G     L          LD   +          +    +         P  L      
Sbjct: 34  AHGPEAVRLSALLRPDIVLLDGRDTGTGTGTGTDTVETVRRLVQAPDGHAPHVLLLTTSD 93

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                          +         +   + ++     ++         L+ A +     
Sbjct: 94  DA-HPYGALRAGAAGHLREDATADELVAAVRVVAAGDVVVSPGLAR--ALIDAVRNRRAV 150

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              V   +   LTGRE + LT ++ G+++ EIA  L I+  TV +++++I+ K   + R 
Sbjct: 151 ENSVPGNRLGTLTGRERDVLTAVASGESNAEIADRLCIAPTTVKSHVSNILTKIGARGRV 210

Query: 235 GAIAYAVRNNIV 246
            A+ +A  + +V
Sbjct: 211 QAVVFAYESGLV 222


>gi|238918900|ref|YP_002932414.1| hypothetical protein NT01EI_0965 [Edwardsiella ictaluri 93-146]
 gi|84663108|gb|ABC60090.1| EsrB [Edwardsiella ictaluri 93-146]
 gi|238868467|gb|ACR68178.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 214

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 68/246 (27%), Gaps = 34/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   I  ++I++  +       + +L         +  +   ++       L+       
Sbjct: 1   MTISILPLSILIVEDHALLADGIRNLLDSQPRYRVVGAVSNGLAVYEACQRLS------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      D++R +     D    V+                  
Sbjct: 54  --------PDLVLLDLGLPGMDGVDVIRQLRRRWNDMRIVVV--------TASSEARRGS 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A     Y         +   +         +      +                   
Sbjct: 98  DALAAGALAYVLKQSPQQTLLAAMQHASLGKTFVDPALRLD-----------SLEASSDI 146

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ++  LT RE + L  ++EG  + +IA +L IS  TV  +  ++MRK      +    +A
Sbjct: 147 AQEPPLTLRERQILKLVAEGNRNRDIAELLSISLKTVETHRLNLMRKLDAHNAAELSNWA 206

Query: 241 VRNNIV 246
            R  ++
Sbjct: 207 RRLGVL 212


>gi|326796352|ref|YP_004314172.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326547116|gb|ADZ92336.1| two component transcriptional regulator, LuxR family [Marinomonas
           mediterranea MMB-1]
          Length = 211

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   T +  +    +  +      I ++ +           N          K  E
Sbjct: 98  GALGFIPKTSEPFQYASAINSILEGDIWIPKNAV---------LENQNDVNLDMQKKVAE 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++ + L ++ EG  + +IA  L IS  T+  +I +I RK     R+ A+  A
Sbjct: 149 LTPQQFKVLCYLHEGMLNKQIAYELNISEATIKAHITAIFRKLGVNNRTQAVLIA 203


>gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 199

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +     +  + +   G     L++        LD  +      
Sbjct: 3   LLVAEDQSMLRDALCQLLELQSDVETVHQASNGQEAMNLLQSQKIDVAILDVEMPKQTGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +   +       ++         F              + Y      +A +   +
Sbjct: 63  DVLEWVKEKQ-----PTVKVVIVTT---FKRPGYFERAIKADVDAYVLKERSIADLMKTI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +    + +                 +V       L+ +E+  L   + G +S 
Sbjct: 115 HTVLDGKKEYSPELM-----------------EVMMTSKNPLSNQEILVLQAAARGLSSK 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV NY++SI+ K A + R  A+  A  N  +
Sbjct: 158 EIAQKLYLSNGTVRNYMSSILTKLAAENRLEAVRIAQENGWI 199


>gi|262275113|ref|ZP_06052924.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
 gi|262221676|gb|EEY72990.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
          Length = 222

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 62/217 (28%), Gaps = 18/217 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            H   R  L+A +              +    +  G                LD  +   
Sbjct: 9   DHPLFRDALIAVIHGRFEECDILQSENIERTLDVAG-------DNPDLDLILLDLNMPGM 61

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +      E    Y  +             + + I         + + +    R+R
Sbjct: 62  AGLKGL-----LELRNQYPTIPVAIISAETNKQIILQTIAY---GAVGFIAKSAPRERMR 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                +      +  D +   G          +           LT R++  L  +++G 
Sbjct: 114 DAFEKILDGHVYLPADIIRAEGE-GETSQRRKEDPQFSPEMLHTLTRRQLLVLKSMAQGA 172

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +IA  L IS  TV +++++I++K     R  A+ 
Sbjct: 173 ANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVV 209


>gi|149192213|ref|ZP_01870429.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
 gi|148833944|gb|EDL50965.1| transcriptional regulator, LuxR family protein [Vibrio shilonii
           AK1]
          Length = 211

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 19/172 (11%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D      LD  +        +  +          V+         +              
Sbjct: 50  DEPDLILLDLKMPGANGMSGLIHLRAD--YPDIPVVVISASEEPSIV------SQAKTHG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D+  +   L  +         + L +               +    K   L
Sbjct: 102 AFGFIPKSSDMRELINALNQVLNGEPYFPAELLID-----------SAENNDLAEKLATL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           T ++ + L  +S+G  + +IA  L +S +T+  +  +I RK   K  + A+ 
Sbjct: 151 TPQQYKVLGMLSDGLLNKQIAYDLNVSEDTIKAHRTAIFRKLGVKNSTQAVI 202


>gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
 gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1]
          Length = 376

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEI 206
            +     ++ L  +  +                K+    LT RE   L  ++EG  + +I
Sbjct: 276 GEEFDCTKEELTLLEEVGKRLGLFLSRKGEKVEKNTVLHLTERESMILGLLAEGYDNKKI 335

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A +L +S +TV +Y++S+M K   K R+  +A A R  ++
Sbjct: 336 AGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 375


>gi|297203493|ref|ZP_06920890.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
 gi|197714466|gb|EDY58500.1| two component transcriptional regulator [Streptomyces sviceus ATCC
           29083]
          Length = 239

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I +   D    + +  +   S  +  +       +   R+  L               
Sbjct: 23  VRIFVIDRDPVFRAGIRAMVDSSPGVDLVGESATAGAVGTRLELLG-------------- 68

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  V                 +    +  R   L           +       
Sbjct: 69  ----ATVDVCVMDPCFTGADGVPVRCSIEDLATMAARTRVLVLSGADEEAVIVPALRAGV 124

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   L ++   G          +              +        LT
Sbjct: 125 RGYLRKGASQQEILRCLHVIAAGGAAFGVGTAERLS-----SFFDGAQPETSNAAFPFLT 179

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L +++ G T+  IA  L +S  TV N+++ ++ K     R+ A   A    +
Sbjct: 180 ERERQVLDFLARGYTNRRIARTLVLSEKTVRNHVSHLLAKLQVNDRTEAALRAKEAGL 237


>gi|115523030|ref|YP_779941.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115516977|gb|ABJ04961.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 29/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +V++ L  +       VS L +R +    +                          + 
Sbjct: 1   MSRVSVALVDDHPLMIEAVSSLLSRIEDFDIVATGTSAKDVLE---------------IG 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   +D  ++ D         A        +       +       +   I    
Sbjct: 46  TLVRPQVMIVDLGMTGD-------VYAAISTVTSLST--ATKFIAFTASTGVECAIRALD 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y         +   +  +      I R   +   ++AA +    +       K  
Sbjct: 97  SGASGYVLKGSSSDELIQAITCVKSGETYITR--TFATQVIAALRDTSLRRRAAEAVK-- 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L+ RE + +  + +GKT+ EIA  + IS  TV +Y+  +M+K   + R   +  A + 
Sbjct: 153 -LSIREQQIVRLLLKGKTNKEIAHAISISDKTVKHYMTILMQKLQVRNRLEVVIAAQKL 210


>gi|303237715|ref|ZP_07324275.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
 gi|302482167|gb|EFL45202.1| transcriptional regulator, LuxR family [Prevotella disiens
           FB035-09AN]
          Length = 203

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 4/119 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELT 187
             S++ D      G   +   G     + +  + ++  +     K+        K+  L+
Sbjct: 82  VLSVSNDPNAQLSGFHTICINGS--EEELVRSLLMIEQHGHAGGKNLPEMPQVLKNKILS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ + +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  V
Sbjct: 140 NREIEVLSLVVQGYINKEIASKLCISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGYV 198


>gi|258625963|ref|ZP_05720829.1| Glycerol metabolism activator [Vibrio mimicus VM603]
 gi|258581754|gb|EEW06637.1| Glycerol metabolism activator [Vibrio mimicus VM603]
          Length = 222

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 4/163 (2%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++       +     L E                         +   A     Y + +
Sbjct: 50  DLLLLDLNMPGMTGLSGLLELRNVAPTTPVAVISAES---DKQTVLQTLAYGAVGYVAKS 106

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               ++      +      +  D L E  +      ++             LT ++++ L
Sbjct: 107 CARQQMGEAFAQILRGDVYLPADILRE-NVKTPPNHSLRNQAGFSAETLQTLTRKQLQVL 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             +S+G  + +IA  L IS  TV +++++I++K     R  A+
Sbjct: 166 QSMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAV 208


>gi|206577986|ref|YP_002236599.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342]
 gi|288933581|ref|YP_003437640.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|206567044|gb|ACI08820.1| transcriptional regulator, LuxR family [Klebsiella pneumoniae 342]
 gi|288888310|gb|ADC56628.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22]
          Length = 217

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D +R+  G+  +    +      +        + A     +     ++  LT 
Sbjct: 108 GVFRHDDDESRLIEGVKAVLNGEQTAELSVM--------HPAMYAADHASAPVENSPLTE 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  +  G T+ +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 160 RECEILNELRCGATNLDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214


>gi|223934752|ref|ZP_03626672.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896707|gb|EEF63148.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 224

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 62/234 (26%), Gaps = 32/234 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  +        + L      L     +         + +L                 
Sbjct: 15  ILLVDDHPIMREGFTQLINNEPDLHVCAHVGNATKAFDSIGSL---------------KP 59

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  + S    ++++ +     +      Q        +                 
Sbjct: 60  DLAIIDIALGSSSGIEVIKNIHSRWNN------QLLM--ALSMHEESVYGERALRAGARG 111

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELT 187
           Y         I   +  +      +          + +     F + +   G     +L+
Sbjct: 112 YVMKNETTEEIMRAIREVLRGEVYLS-------KQMRSLVVQKFLNGEPAHGHFGVEQLS 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            RE+E    I  G+ + +IA  L +S  TV  Y A I  K   +     + +A+
Sbjct: 165 DRELEVFQLIGSGRRTGQIAAELHLSIKTVETYRAHIKEKLMLRNGMELVRHAI 218


>gi|239918109|ref|YP_002957667.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415706|ref|ZP_06247448.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839316|gb|ACS31113.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 224

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + +   G      V         LD  +     
Sbjct: 26  RLLLADDQALVRGALAALLDTEPDLIVVAQAASGDEVADAVEAHDVDVALLDIEMPGVDG 85

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +     D           L    F          A     +        ++   
Sbjct: 86  LEALRRIRDRGLD--------CAVLMVTTFGRPGYLERALAAGARGFVVKDTPAEQLADA 137

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++                      D        LT REV+ L     G + 
Sbjct: 138 VRAVARGERVVDPSLA----------------VDTLAAGPSPLTPREVDVLREALTGASV 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV N++++ + KTAT TR  A   A     +
Sbjct: 182 RAIAGRLHLSAGTVRNHLSAAIGKTATSTRGEAATVARDRGWL 224


>gi|126650765|ref|ZP_01722981.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592430|gb|EAZ86448.1| two-component response regulator [Bacillus sp. B14905]
          Length = 201

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 76/239 (31%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     ++ L +    +  +  +                 G   +  ++ +
Sbjct: 2   IRVLLAEDQQMLRGALTSLLSFEPDIEVIAEVSD---------------GQKAWDYIQQE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      +L   + ++              +    F              
Sbjct: 47  LPDVCLVDIEMPHLSGLELAEKIKVANLP--------CKVMIVTTFARPGYLQKAMDCEV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +    +++ +D    + +                 +   L 
Sbjct: 99  HGYLLKDEPIDYLIATIRKIMQGEKVVSKDLAATLFM----------------KEQNPLN 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  + EG T+ EI+  L +++ T+ NY+++ ++K   ++R  A   A     +
Sbjct: 143 EREIAVLQLVKEGLTTHEISKQLFLTKGTIRNYLSTTIQKLQVESRQQAAQIASDKGWL 201


>gi|88860703|ref|ZP_01135340.1| DNA-binding response regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
 gi|88817298|gb|EAR27116.1| DNA-binding response regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
          Length = 198

 Score = 94.2 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 25/221 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L C +             G +   L++   F     D  +      +
Sbjct: 3   ILLAEDQAMVRTALACLLRLEGDFTVTEAADGQAALKLLKQTPFDLLLSDIEMPGQTGIE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L + +   +             +    F                +      V  +   + 
Sbjct: 63  LAQYIQQQKL--------ATKVVMITTFGRAGYVKRAIDAGVGGFLLKDAPVEELIHAIN 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R+I  + L                     G    L+ +E + L   +EGK++ +
Sbjct: 115 QVMAGKRVIDSELLL-----------------NSLGDQDPLSDKERQALRLAAEGKSTHD 157

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I+  T  NY++  + K     R  A   A +   +
Sbjct: 158 IAAALYIAEGTARNYLSEAISKLNAMNRIDAARIARQKGWL 198


>gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis]
 gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 8/210 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGA----SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +D T      +    + VG     +   L   +  Q ++ D I+  D     +    
Sbjct: 1   ILIVDDTPDNLALLSDALDEVGYMVLVALDGLSALNRIQRRRPDLILL-DAMMPGLDGFE 59

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             ++ K          LF          +   A     Y +   +   +   +       
Sbjct: 60  TCQRIKADAATADIPVLFMTALTDSEHVVKGFAAGGIDYVTKPINTEEVLARVASHLRTA 119

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
           RI+   +       A       +         F+LT REVE L W++ GKT+ +I  ILG
Sbjct: 120 RIL---QTARAASQAQPLTLNDEPAYATLSARFQLTEREVEVLRWVACGKTNRDIGDILG 176

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +S  TVN ++  +  K   +TR+ A + A+
Sbjct: 177 LSPRTVNKHLEHVYVKLGVETRTAATSVAL 206


>gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437]
          Length = 92

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K RS A+   VR  
Sbjct: 30  LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVRLG 88


>gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 203

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 60/217 (27%), Gaps = 25/217 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL------VRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +I  +        + AL E               +      + + D +V+     ++   
Sbjct: 6   VIVAEDQGMVLGALAALLETEPDIAVCARAVNGRLALKAVADHQPDVLVTDIEMPEMTGL 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              +E  + Y   +    +    F                Y       A +   +  +  
Sbjct: 66  TLAAEVRERYPSTRI---IILTTFARPGYLRRALDAGAKGYLLKDRPAAELADAVRRVHQ 122

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             R+I                      D        LT RE + L    EGK S +IA  
Sbjct: 123 GLRVIDPQLAA----------------DAWESGPDPLTERERQILWRAGEGKASQDIAAE 166

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  TV NY++  + K     R  A   A     +
Sbjct: 167 LHLSEGTVRNYLSEAISKLGAANRVDAARIARSKGWL 203


>gi|157371824|ref|YP_001479813.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157323588|gb|ABV42685.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 210

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 65/233 (27%), Gaps = 34/233 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q   ++  +     S +++          +                 E     H +L 
Sbjct: 1   MGQEYALVVDDHPLVASGIANFLNTHCRFKHVHMATN------------EDHCYRHIML- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                       +V   W  +      L E ++ Y+ ++                     
Sbjct: 48  ------NGPPRLMVIDFWLSNGTALKFLKEMNERYSQIRLLVVSGD---DNNEIWQKVRE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +             +  L        +D    +  +  +             +  
Sbjct: 99  AGGHGFVLKNESPELFAKAVATLTDNRLWFPQDNATGVTPVQNHL------------QHL 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LT R+VE L  +  G  +  IA  L IS  TV  +I++I++K    +R  AI
Sbjct: 147 NLTPRQVEVLAMMLRGFPNKRIASQLSISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|188577478|ref|YP_001914407.1| transcriptional regulator LuxR/uhpA family [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|57939927|gb|AAW59566.1| transcriptional regulator luxR/uhpA family [Xanthomonas oryzae pv.
           oryzae]
 gi|166361492|gb|ABY86905.1| GacA [Xanthomonas oryzae pv. oryzae]
 gi|188521930|gb|ACD59875.1| transcriptional regulator LuxR/uhpA family [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 215

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 67/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + ++   +  +   +   +   ++  L               
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDVCVVGEAESGEAALPQIRQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +   +      ++    +   P                
Sbjct: 48  KPDIVLCDLHLPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L      +  +     +     L+
Sbjct: 100 SGYVGKGGDAHELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 151 PRELEVALLLTQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 208


>gi|78485726|ref|YP_391651.1| two component LuxR family transcriptional regulator [Thiomicrospira
           crunogena XCL-2]
 gi|78364012|gb|ABB41977.1| two component transcriptional regulator, LuxR family
           [Thiomicrospira crunogena XCL-2]
          Length = 232

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 12/227 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
             +    D           +     +  + E   G +   L+         +D  +    
Sbjct: 6   PKVLLAEDHDLVRAGFKSILDSDGTVKVIAEAQDGETTLSLIEEKQPDILIIDLSMPKLS 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              ++  +   +       +   T    P                      +   A +  
Sbjct: 66  GLAVITQLKKQKNPIK---IIVLTAAEAPNVW-----KEVLDLGVEGLALKSVSKAELVS 117

Query: 143 GLMLLFPKGRIILRDRLWEI-GLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISE 199
           G+  +      I  +    +   LA  +              +  +L+ RE + +  ++E
Sbjct: 118 GIKSVIADENFIHSEIQPALDAYLAELEGQKTPEEDSGDKPSRPKKLSVREKQVIKLVAE 177

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  + +IA +L IS  TV+ +  +IM K      +  + YA    ++
Sbjct: 178 GYKTKDIADMLEISDRTVSKHRENIMTKLGMTASAELVNYASHIGLL 224


>gi|307824963|ref|ZP_07655185.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307734010|gb|EFO04865.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 210

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L      +A              +                 +
Sbjct: 2   IRLLIVDDHALMREGLKQLFEGEGDIAVSAEAGNGEEALTMLQ---------------NE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+  +           +   +    P                
Sbjct: 47  TVDLVLLDITIPGIHGVELITKIRER---PSSPPILVLSMHNEPQI-----AKRKLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +   GR I  D   +I    +  A +             L+
Sbjct: 99  SGYITKDSSPKNLLEAIRKVASGGRYIAADIAEKIAFEVSTAAPLVLHE--------LLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GRE+  L  +++GK   EIA+ L IS  TV+ + A +M+K    +    + Y + + +
Sbjct: 151 GRELVILRMLAKGKKVCEIALELDISSKTVSTHKARLMQKMHIDSDVKLMKYTIAHGM 208


>gi|29832411|ref|NP_827045.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609530|dbj|BAC73580.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 210

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 25/231 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLD 75
           + R +    +    D       L   +     +  + +   G +              LD
Sbjct: 4   DHRPAKSVRVLLAEDQGMMRGALALLLGLEEDIEVVAQVGAGDAIVDAALAHRPDVALLD 63

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      +    +                 L    F                +     
Sbjct: 64  IELPGMSGLEAAAELREQA--------PGCRVLILTTFGRPGYLRRAMEAGAAGFLVKDG 115

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            V  +   +  +     +I                    +          LT RE + L 
Sbjct: 116 PVEDLAAAIRRVLTGETVIDPAL----------------AAAALSAGPNPLTARECDVLK 159

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +G T  +IA  L +S +TV NY++S + KT T+ R  A+  A +   +
Sbjct: 160 ASVDGATVADIAAKLRLSESTVRNYLSSAIGKTGTRNRMEAMREARQQGWL 210


>gi|84496282|ref|ZP_00995136.1| putative two-component system response transcriptional regulator
           [Janibacter sp. HTCC2649]
 gi|84383050|gb|EAP98931.1| putative two-component system response transcriptional regulator
           [Janibacter sp. HTCC2649]
          Length = 218

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 31/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L    D +  +      +  T R+ AL               
Sbjct: 5   VRVYLLDDHEVVRRGLRELLEVEDDVVVVGESASALEATRRIPAL--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D +V      D        +       +          +              
Sbjct: 50  -----RPDVMVLDARLPDGSGIDVCRDVRSVDPTIVGL---ILTSYDDDDALRAAVLAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y       A +   +  +     ++    +  +              D    +   L+
Sbjct: 102 AGYLLKDVRGADLVTSIRRVASGENLLDAGVVARLRT--------GWGRDAEDPRLAPLS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            +E   L  I++G T+ +I   + ++  TV NY+ S++ K   ++R+ A  Y     
Sbjct: 154 PQERRILEHIAQGLTNRQIGQAMSLAEKTVKNYVTSVLAKMGLESRTQAAVYVASQG 210


>gi|290511352|ref|ZP_06550721.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55]
 gi|289776345|gb|EFD84344.1| LuxR family transcriptional regulator [Klebsiella sp. 1_1_55]
          Length = 217

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D +R+  G+  +    +      +        + A     +     ++  LT 
Sbjct: 108 GVFRHDDDESRLIEGVKAVLNGEQTAELSVM--------HPAMYAADHASAPVENSPLTE 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  +  G T+ +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 160 RECEILNELRCGATNLDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 214


>gi|149188017|ref|ZP_01866312.1| two component response regulator UhpA [Vibrio shilonii AK1]
 gi|148838005|gb|EDL54947.1| two component response regulator UhpA [Vibrio shilonii AK1]
          Length = 203

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 56/232 (24%), Gaps = 37/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+VL  +     S  + L    + +  +            +                  
Sbjct: 2   INVVLVDDHIIVRSGFAQLLNLEEDINVVGEFSSVEEAKRGL---------------PGS 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +  +    L+  M                     V  +            
Sbjct: 47  GVQVCILDISMPDESGLALLESMPKGIACV-----------MLSVHDSPAMVEKALELGA 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +      G  +  D            A    S          LT
Sbjct: 96  LGYLTKRCSPDELIQAVRTSANGGCYLTPD-----------IAMKLASPRPFQQALSRLT 144

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    ++ G     +A  LG+S  TV+ + A+ + K A K        
Sbjct: 145 KREYEVSELLATGLDVKAVAAELGLSHKTVHVHRANALDKLAVKNNVELAKL 196


>gi|290960685|ref|YP_003491867.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650211|emb|CBG73327.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 201

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVSSDWP 83
            +    D+      L   ++    +  + E       L    + +     +D  +     
Sbjct: 3   RILLAEDMHMVRGALVALLTLEDDLTVVAEVERGDRILPTALECVPDVAVIDVDLPGLDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A          L     L               A     +        R+   
Sbjct: 63  LSAAAQLAQQ--------LPSCRTLILTSLGRPGTLRKALAAQVGGFLLKDAPPDRLAGA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I          LA    +           +  LT RE E L   ++G  +
Sbjct: 115 VRDVAAGKRVIDP-------QLALAAFD---------NGENPLTPRETEVLRMAADGAEA 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV NY+ +++ K   + R  AI  A  +  +
Sbjct: 159 ADIASRLFLSVGTVRNYLTTVVTKLNARNRVDAIRVARESGWL 201


>gi|303256175|ref|ZP_07342191.1| two component transcriptional regulator, LuxR family
           [Burkholderiales bacterium 1_1_47]
 gi|331001230|ref|ZP_08324856.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
 gi|302860904|gb|EFL83979.1| two component transcriptional regulator, LuxR family
           [Burkholderiales bacterium 1_1_47]
 gi|329568957|gb|EGG50753.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 228

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 16/195 (8%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF--HT 115
           AS   L+          +  +      D +R  +               +    V   ++
Sbjct: 41  ASATALLAQTNCDILFTELNLPDGDGLDFIRRASED----------LAVQSIVAVTSKNS 90

Query: 116 LPENITPPAGMDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             +  T        Y +    D+  +   + +L   G  +       +      +  +  
Sbjct: 91  AADIATAIENGAVGYITKQDSDLHDVGNYIRILRAHGSPMSPTAARVLVDALRRKPTVKP 150

Query: 175 SYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              V   +      L+ RE E L  ++ G +  EI+ +L IS +TV  +I  I RK    
Sbjct: 151 VVSVAASRPAVANPLSPRETEVLNLLARGMSFAEISSVLNISCHTVTAHIKKIYRKLQVH 210

Query: 232 TRSGAIAYAVRNNIV 246
           +R  A+  A +  I+
Sbjct: 211 SRGEAVYEAAQLGIL 225


>gi|254464518|ref|ZP_05077929.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
 gi|206685426|gb|EDZ45908.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium Y4I]
          Length = 220

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 11/222 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D                  ++     GA         L  ++ +D I+    
Sbjct: 1   MTVVLIVDDHHLIRAGAKN---LLEGAFSGMRVEGAETVSDALAFLGADKTVDLILLDVH 57

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D      L    ++                 +           + +   + D   +  
Sbjct: 58  LPDSEAIDGLVRLKRFDPSNAVALISGDTDHDLI---RAALEAGADGFIPKSADPQVLIH 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            + L+      + R  L          A +    D     +  LT R+ +    + +G  
Sbjct: 115 AVSLILEGEIFLPRSYLQ-----GGMMAEVPAPLDTSERPEQSLTARQRDVFELMCKGLA 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA +L +S +T+ +++++I ++  T +RS  IA   +  
Sbjct: 170 NKEIARLLDLSESTIKSHVSAIFKQIGTTSRSKTIAIFRQEG 211


>gi|187920713|ref|YP_001889745.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187719151|gb|ACD20374.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans
           PsJN]
          Length = 333

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 62/246 (25%), Gaps = 29/246 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
                 + +++ ++           +    + +G   F           K   +++S   
Sbjct: 83  PAARRAAPVISPLVRFGSAQDRIEFVRQRIKQLGFDSFSYSATRTSAHHKTMFVLTSYES 142

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRY--- 130
              +         +    +   +    P      +                G+ +     
Sbjct: 143 HSWLTRYFRERYFELDPRVALASPTGLPFLWNTADMRADLPRAQMRSERLGGLIDMLEVT 202

Query: 131 -------CSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS------ 175
                    +      +   L         R +    + E  + A        +      
Sbjct: 203 GRKSGILTQMPLPEPELSASLCFNSEIGNPRWMTESIVAETLMFAHTIHEFIWTHAKSVI 262

Query: 176 -YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                  +   L+  +   L  + +G+   EIA  LG+S + V+ ++  + +    + R 
Sbjct: 263 GIAPAQQQRVTLSELQHAVLKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRV 322

Query: 235 GAIAYA 240
             I  A
Sbjct: 323 QLINVA 328


>gi|83647758|ref|YP_436193.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635801|gb|ABC31768.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 223

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 64/230 (27%), Gaps = 24/230 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDC-TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
            R   +       D L   +      +              A+  LL     F    LD 
Sbjct: 15  LRVLVIDDHQLVIDGLRVALTAQQVPIDLVNAFN-----CQAAQTLLETDQSFDLILLDL 69

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +     F  +R +                         + +           + S +  
Sbjct: 70  SLPDGRGFKFLRYLTCKRIYI--------PVAILSASEDIEDVELSLRSGAIGFISKSSS 121

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I + +  +    + +             Y             +   +T R++E L  
Sbjct: 122 AMEINLAIRQILNGKQYVP----------NFYIHRNQTPVQDSQLRLDSITPRQMEVLQL 171

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G  +  I   L ++ +TV +++ ++        R+  ++ A R ++V
Sbjct: 172 LAKGLPNKRICSELSLTEDTVKSHLKALFMHLNVHNRTECVSVATRLHLV 221


>gi|332292518|ref|YP_004431127.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170604|gb|AEE19859.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 212

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 70/233 (30%), Gaps = 30/233 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++          ++ +         +  ++        +                   
Sbjct: 3   KVLIADHHPITRKGITSILLAEGNYEVIGHVNDGNDLLNTLTTT---------------E 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                L+  + +      ++ +           ++       P        ++      +
Sbjct: 48  IDILILEIDIPNLNSITALKAIKREF-----PHIKILVLSCHP---EEMYALSAIKYGAS 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y + T  + R+   +  +   G  +          L+    +   +      K  +L+ 
Sbjct: 100 GYVAKTASIQRVLNAINQVQRGGIYLNEA-------LSQRLVSDGNATQGLAFKYKKLSS 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE+E L  +S GK + EIA  L I+  TV+ Y   +++K   +  +  I +A 
Sbjct: 153 REIEVLNLLSNGKRNKEIAAELDINEKTVSTYKMRLLKKLEAQNVAELIKHAR 205


>gi|309810898|ref|ZP_07704699.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308435204|gb|EFP59035.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 202

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 63/223 (28%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E   G       R        +D  +     
Sbjct: 4   RLLIADDQAMVRGALAALLDLESDLEVVAEVGRGDEVLDACREHAPDVVLMDVEMPGMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +           L     L    F                +        ++   
Sbjct: 64  LEASAALRQ--------ALPAVKILIVTTFGRPGFLRRAMQAGVQGFVVKDTPATQLADA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++      +  +                  +  LT RE++ L   + G T 
Sbjct: 116 VRRVHAGLRVVDPQLAADSLVFG----------------ESPLTARELDVLRAAAAGGTV 159

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  + +S  TV N+++S + KT  +TR+ A+  A  N  +
Sbjct: 160 ADIARAVFLSEGTVRNHLSSAIGKTGGRTRADAVRIAQENGWL 202


>gi|294509070|ref|YP_003565959.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
 gi|294352374|gb|ADE72696.1| DNA-binding response regulator, luxR family [Bacillus megaterium QM
           B1551]
          Length = 202

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 44/240 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  +L  +       +  L    + +  +  +    S    +   +              
Sbjct: 3   IRTLLVDDHLLVMLGIRRLLESEEDIEIIDTVSDPSSLIEVVATTS-------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D +V+     +        E    +  ++         +              
Sbjct: 49  ------PDVVVTDVRMKEFNGIELTKELLSKFPEIKVV---ILSGYDHEEYYNAAFKAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
           + Y +       +   +        +                       +    KDFE L
Sbjct: 100 SAYITKERSAFDLANAIRQSNMGYILFS--------------------KNQISTKDFETL 139

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E + L  IS+ KT+ EI++ L IS+ TV  +I+SI+RK    +R GA+   ++  ++
Sbjct: 140 TSAEQKILLLISKDKTNYEISMDLSISKRTVEYHISSIIRKLDVDSRVGAVVKGIKKGLI 199


>gi|237731760|ref|ZP_04562241.1| transcriptional regulator NarL [Citrobacter sp. 30_2]
 gi|226907299|gb|EEH93217.1| transcriptional regulator NarL [Citrobacter sp. 30_2]
          Length = 254

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 42  LEPATILLIDDHPMLRTGVKQLVSMAPDITVVGEASN---------------GEQGIELA 86

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 87  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 138

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 139 RGADGYLLKDMEPEDLLKALQQSAAGEMVLSEALTPVLA-------ASLRANRATSDRDV 191

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 192 TQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 251

Query: 244 NI 245
            I
Sbjct: 252 RI 253


>gi|88854577|ref|ZP_01129244.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88816385|gb|EAR26240.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 206

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 73/240 (30%), Gaps = 37/240 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +     + +  L    D L  +                        F LV+  
Sbjct: 2   IRVAIADDHPVVRAGLRALLDHEDDLTVVGEASTPDE---------------AFALVQST 46

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 +D     ++   D+ R +   E          P  L    + T  + +      
Sbjct: 47  SPSVILMDLQFGEAETGADVTRRIRALE--------AAPYVLVLTNYDTDGDILGAVEAG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y         +   +         +          +A    +  ++          L
Sbjct: 99  ASGYLLKDAPPHELIAAVRAAAAGESALAPA-------IAGRLLDRMRA------PQISL 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  ++ GK++  +A  + +S  T+ +++  I  K    +R+ A++ A    ++
Sbjct: 146 SKREIEVLDKVAHGKSNAVVASEIFVSETTIKSHLVHIFSKLDVSSRTAAVSRARELGVL 205


>gi|329848990|ref|ZP_08264018.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328844053|gb|EGF93622.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 216

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 4/141 (2%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +   ++          A   + Y     D A +   L  +      +       +  
Sbjct: 79  AMVVVATIYDDDTHLFDALAAGAHGYLLKDEDRAAMTHFLRRIETGDPPLSPSIARRL-- 136

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                 +  +        +  LTGRE E LT ++ G T  E+A  L +   TV  Y+  I
Sbjct: 137 --LKHFHRSEVEAPAPDNEVVLTGRETETLTLLARGLTIAEVAKALNLKPQTVAGYVKVI 194

Query: 225 MRKTATKTRSGAIAYAVRNNI 245
            +K    +R+ A   AV+  +
Sbjct: 195 YQKLNVSSRAEATLKAVKRGL 215


>gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus
           saanensis SP1PR4]
 gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus
           saanensis SP1PR4]
          Length = 203

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V         LA ++  +  +        L    G     ++  +       D  + 
Sbjct: 6   VMLVEDQGMVRGALASLLNAEADIEVH-----LQAANGREALRMMLKEPPDVLVTDIEMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L   +  +          +   +    F                Y       A 
Sbjct: 61  EMTGLELAAAVREAGL--------KTRVVMLTTFARAGYLRRAMESGVLGYLLKDRPAAE 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R+I  D   E                    +   LT RE + L    E
Sbjct: 113 LADAVRRVHRGLRVIDPDLAAE----------------AWGSEVDPLTERERQILLRAGE 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+T+ E+A  LG+S  TV NY++  M K     R  A   A     +
Sbjct: 157 GRTTAEVARELGLSEGTVRNYLSEAMSKLGAVNRIDAARMARAKGWL 203


>gi|153834921|ref|ZP_01987588.1| response regulator [Vibrio harveyi HY01]
 gi|156972525|ref|YP_001443432.1| transcriptional regulator LuxR [Vibrio harveyi ATCC BAA-1116]
 gi|148868647|gb|EDL67731.1| response regulator [Vibrio harveyi HY01]
 gi|156524119|gb|ABU69205.1| hypothetical protein VIBHAR_00157 [Vibrio harveyi ATCC BAA-1116]
          Length = 211

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 19/171 (11%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +          V+         V           +    
Sbjct: 52  PDLVLLDLKMPGANGMSGLIHLRAE--YPDIPVVVVSASEESSVVT------QVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               + +    K   LT 
Sbjct: 104 GFIPKSSDMRELVNALNQVLNGDPYFPEGLITN-----------NAACNDLAEKIAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|315656593|ref|ZP_07909480.1| LuxR family DNA-binding response regulator [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492548|gb|EFU82152.1| LuxR family DNA-binding response regulator [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 220

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 36/236 (15%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+ ++ +++  + E     ++ +  R+  L  +           R               
Sbjct: 3   ELSEIRVMIVDDHEIVRRGIAEIVDRAADLQVVAEAGSVAEALSRAE------------- 49

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      DL+R + +        +      +    F          
Sbjct: 50  --LANPNVVLVDLQLPDGTGIDLIRQLRV--------MTPNARMIVLTSFDDDEALAESL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y   T     I   +  +     ++    +              ++     G  
Sbjct: 100 EVGAAAYLLKTVAGVEITNVIKAVAAGRTLLDERTVT-------------RTSANRSGPT 146

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT  E + L  I +G ++ EI   LG++  TV N+I +++ K   + R+   A+
Sbjct: 147 ERLTPTEKKILGLIGDGLSNREIGDTLGVAEKTVKNHITALLSKMGLQRRTQVAAW 202


>gi|187926602|ref|YP_001892947.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241666113|ref|YP_002984472.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728356|gb|ACD29520.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240868140|gb|ACS65800.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 215

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V H+  R+                          G     LVR  
Sbjct: 2   IRVMIADDHAVMRDGVRHILERAGDFEVACEASD---------------GTQVVQLVRDH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +L+R +             R   L   +               
Sbjct: 47  QPQVIVLDLSMPGHSGLELLRQLHDDH--------PRVRVLVLTMHAEEQYVARAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +   G  +      ++       +               L+
Sbjct: 99  AGYLTKESAATELVTALQKVANGGTYVSPPMAEKLAHSLGEPSEEAAH--------TRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +  G+   EIA  L +S  T++ Y   +M K    + +  + YA+R+ +
Sbjct: 151 DREMEVYRRLVRGEPLTEIATSLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHRL 208


>gi|21231533|ref|NP_637450.1| LuxR/UhpA family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66768410|ref|YP_243172.1| LuxR/UhpA family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188991781|ref|YP_001903791.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113215|gb|AAM41374.1| transcriptional regulator luxR/uhpA family [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573742|gb|AAY49152.1| transcriptional regulator luxR/uhpA family [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167733541|emb|CAP51745.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 215

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 67/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + ++   +  +   +   +   ++  L               
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDIEVVGEAESGEAALPQIRQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +   +      ++    +   P                
Sbjct: 48  KPGIVLCDLHLPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L      +  +     +     L+
Sbjct: 100 SGYVGKGGDAHELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 151 PRELEVALLLTQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 208


>gi|86361277|ref|YP_473164.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86285379|gb|ABC94437.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 218

 Score = 94.2 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 62/207 (29%), Gaps = 25/207 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL--VRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +   +        M    E   ++   L            LD  +      D    +   
Sbjct: 23  ISMREALTDLFRSMKFGAEAFESTSAFLEKADLSRPGCLLLDVQLPGVSGLDFQVELERI 82

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                  ++      F   F  +P ++         + +  F+   I   +     +  +
Sbjct: 83  GNQM--PIV------FMTGFGDIPMSVRAMKAGAVDFLTKPFEEQDILDAVATAMERDAV 134

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
             ++      + +   +               LT RE E +  +  G  + +IA  LGIS
Sbjct: 135 RRQESAQSAAVTSLAAS---------------LTPREREVMDAVVRGLMNKQIAFELGIS 179

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYA 240
             TV  +  ++MRK   ++ +  +  A
Sbjct: 180 EVTVKLHRGNVMRKMEVRSVADLVRKA 206


>gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 217

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               + RD L ++        N     +     + ELT RE++ L+ + +G ++ +IA  
Sbjct: 124 GENWLSRDILNQLIGHLLSLNNTVGELETKL--EMELTRREMQVLSALCQGGSNLDIADS 181

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S +TV +++ SI RK   K R  AI +A RN
Sbjct: 182 LFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|327313696|ref|YP_004329133.1| LuxR family transcriptional regulator [Prevotella denticola F0289]
 gi|326945245|gb|AEA21130.1| transcriptional regulator, LuxR family [Prevotella denticola F0289]
          Length = 209

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELT 187
             ++T D      G         +   + +  I  +  Y  +  ++        K+  L+
Sbjct: 88  VLTITKDPNAQLSGFHSFCIN--VPEDELVRAILKIEQYGHSGGRNLPELPQVLKNKILS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV +  +
Sbjct: 146 NREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGYI 204


>gi|325860035|ref|ZP_08173162.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
 gi|325482561|gb|EGC85567.1| transcriptional regulator, LuxR family [Prevotella denticola CRIS
           18C-A]
          Length = 203

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELT 187
             ++T D      G         +   + +  I  +  Y  +  ++        K+  L+
Sbjct: 82  VLTITKDPNAQLSGFHSFCIN--VPEDELVRAILKIEQYGHSGGRNLPELPQVLKNKILS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV +  +
Sbjct: 140 NREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGYI 198


>gi|296445499|ref|ZP_06887456.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296257065|gb|EFH04135.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 218

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V+++L  +          L  R    A +   +   +                    
Sbjct: 1   MKPVSVLLVDDHPVVREGYRRLLERQKNFAVVAEAEDAAAAYQAYR-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 +   D +V           +      + ++  +R   L   +       +    
Sbjct: 47  ------DHSPDVVVMDLSLRGGAGGLEAVRHIRQWD--KRARILVFTMHSAAAYALKAFE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + +   + + +   + L+   GR +  D   EI           +          
Sbjct: 99  AGASGFITKGGEASELVRAVGLVARGGRALGDDVAREIA---------AERLADGRSPLA 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE E L  ++ G T+++IA  L +S  TV NY   I  K   +T +  +  A+   
Sbjct: 150 DLGPRETEILRLVASGHTTEDIADALHLSPKTVQNYHYQIKSKVGARTDAHLVWLALGAG 209

Query: 245 IV 246
           +V
Sbjct: 210 LV 211


>gi|253699734|ref|YP_003020923.1| LuxR family transcriptional regulator [Geobacter sp. M21]
 gi|251774584|gb|ACT17165.1| two component transcriptional regulator, LuxR family [Geobacter sp.
           M21]
          Length = 215

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            + +T  +S        L  ++     +    ++           F     +   E   D
Sbjct: 2   RKIKTILMSDQILVRQCLWVLLEKAPELDLAAQLD----------FAATELEEVLELHSD 51

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++      D              +       L                   + +   + 
Sbjct: 52  LVIID---PDSSDIDGSDTIRSLVSGTFPAKALILSGRAEPKRVADLLNAGASGFVPKSS 108

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            V  +   +  +   G  +  +       L A       ++     +   LT RE + + 
Sbjct: 109 PVDELLWAVKAVTGNGFYLPPE-------LDAVVRRKGSTWSAAQPQQVILTPREHDIMV 161

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++GK+S  ++  L IS  TV  + A IM+K      +    YA+R   +
Sbjct: 162 LLAQGKSSRAVSEQLLISVKTVEAHRAHIMKKLGLSGMAALAKYALRAGFI 212


>gi|188583923|ref|YP_001927368.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347421|gb|ACB82833.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 241

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 18/230 (7%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + L  E   R   V   P   + LA  I L    +         + +GA+  +L R   
Sbjct: 16  AVPLAGESALRLLVVDDHPLFREALASAIALAFPKAELHE----ADGIGAACEILSRDSA 71

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     F+ +  +           +                          
Sbjct: 72  IDLTLLDLSMQGVTGFEGLDTIRARF-----PRVPILIVSGVT---EPRIMGEALRHGAA 123

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     D A +   +  +      +  D                        +   LT 
Sbjct: 124 GFVPKAVDKATLTRAISEVLGGALFMPPDLATAPA------PARGGDKAPIAERVARLTP 177

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +++  L  I +GK + +IA  L +  +TV  +++ I+RK    +R+  + 
Sbjct: 178 QQMRVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVI 227


>gi|21242845|ref|NP_642427.1| LuxR/UhpA family transcriptional regulator [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78047978|ref|YP_364153.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|289665908|ref|ZP_06487489.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289669001|ref|ZP_06490076.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|294625338|ref|ZP_06703974.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294664684|ref|ZP_06730017.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325927796|ref|ZP_08189021.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21108334|gb|AAM36963.1| transcriptional regulator luxR/uhpA family [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78036408|emb|CAJ24099.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|292600356|gb|EFF44457.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292605537|gb|EFF48855.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325541786|gb|EGD13303.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 215

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 63/228 (27%), Gaps = 22/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +         +  ++  +  V       +     G +    +R         D  
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDVDVVGEAES-----GEAALPQIRQLKPDIVLCDLH 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++   +   +      ++    +   P                + Y     D 
Sbjct: 58  LPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGASGYVGKGGDA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R +       + L      +  +     +     L+ RE+E    +
Sbjct: 110 HELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LSPRELEVALLL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 161 TQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 208


>gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 221

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 12/217 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   +     M  L    G S    V+        LD+++     F+
Sbjct: 13  VLIVDDTPDNLAMLSDALDDAGYM-VLVALDGLSALNRVQRRRPDLILLDAMMPGLDGFE 71

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +          V+      F          +       + Y +       +   + 
Sbjct: 72  TCRRLKAQPASADIPVV------FMTGLTDTRHVVQGFEVGGSDYVTKPIQTDEVLARVA 125

Query: 146 L-LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L     ++      +  +L        +         F+LT REVE L W++ GKT+ 
Sbjct: 126 AHLRTSRILLSAREAQQPSVLTLEDEPAHRLLSAR----FQLTEREVEVLRWVACGKTNR 181

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +I  ILG+S  TVN ++  +  K   +TR+ A + A+
Sbjct: 182 DIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218


>gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 200

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +   + +   +   L ++   G     +    +        ++ +S D   
Sbjct: 76  ASLQAGAHGFVEKSVEFGIVLNALNIVADGGCFFGFNITEVL-------RSVVRSIDRSS 128

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +   LT RE E LT+I+ G ++ +IA+ LG+S  T++N+  S+MRK      +    YA
Sbjct: 129 ERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSMMRKLDLHNVADITRYA 188

Query: 241 VRNNIV 246
           V + IV
Sbjct: 189 VEHRIV 194


>gi|304408345|ref|ZP_07389992.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342634|gb|EFM08481.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 222

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 72/225 (32%), Gaps = 13/225 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF-LLVRWDLFQEQKLDSIVSSD 81
           ++ +    D  +        V             G     LL +   F     D  +   
Sbjct: 4   IATILLVDDHPSVGEGTKQRVERESDFQVTVVESGTEALQLLAQGQFFDLMLFDLNMPVI 63

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L R +  +  D    +L        P F+ L           + + +     AR+ 
Sbjct: 64  NGLELTRRIMETHPDSI--ILIYTGFDIAPNFNIL------IEAGVSGFVNKATSWARLI 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L        ++    + E+                   +   +  RE   L  I++GK
Sbjct: 116 NILRCALQGETVLPTMLVKELRRTDIKV----PVGSNDSLEHISINQREQAILQEIAQGK 171

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA ++ +S+  +   ++ I  K    +RS AI  A ++ ++
Sbjct: 172 SNKEIAAMMFMSQRMIEYNLSKIFEKLNVSSRSEAITEAKKHGLI 216


>gi|171319890|ref|ZP_02908970.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171094877|gb|EDT39909.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 215

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L  ++                   GA+   L          LD  
Sbjct: 2   IRIILADDHAVMRDGLRHILETAGGFDIVGEA-----SDGAAALALAERGAADVLLLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L+R +                 L   +                 Y +     
Sbjct: 57  MPGPTGIELIRLVKTRAPS--------LRMLVLTMHAEAQYAARAFKAGATGYLTKDSAT 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +   G  +       +         M             L+ RE++ +  I
Sbjct: 109 AELVQAVTKVAGGGVYVSPQAAESLARTLRAPVEML--------PHERLSARELDVMRRI 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G+T   IA  L +S  TV+ Y   I+ K      +  + YAVR+++
Sbjct: 161 VAGQTVTRIASELTLSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 208


>gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 509

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +        R  + ++  L           D       +LT RE+E L  +
Sbjct: 393 EELIAAIEAVMQDTSWFSRTVIEKLAHL-----RRPNRPDKPEAGLSDLTPRELEVLGLM 447

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             G ++ EI   LG++ NTV N+IA I  K     R+GA+ +A    
Sbjct: 448 CRGLSNAEIVKKLGVTHNTVRNHIARIYAKIDVHDRAGAVVWARERG 494


>gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces
           ambofaciens ATCC 23877]
          Length = 223

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 75/231 (32%), Gaps = 29/231 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWT--MRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
            T+ V +   R  L A +                 + + +GA    ++        +   
Sbjct: 17  VTTLVRNGTPRLGLRAVLSDAPSVGEVRHCGDWREVEDALGAGRVDVLLLHEDDYVRDRG 76

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT-F 135
           +++          + LS                      + E I     + + +      
Sbjct: 77  VLAGVRRRRPKLLLLLS-------------------SDDVREEILAGPPVPDGFLVEDEL 117

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             + +   L         +       +        +  +    H  ++  LT RE E L 
Sbjct: 118 TASAVEDALQRTLAGEVPMPTSVTRGL-------LDRLRESGQHRPREVSLTARENEVLL 170

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++EG ++ +IA  LGIS + V   +AS++ K     R+ A+  A++N ++
Sbjct: 171 LLAEGMSNKQIARRLGISSHGVKRIVASLLLKLGAPNRTAAVVTAIQNGLI 221


>gi|281557|pir||A38222 regulatory protein gacA - Pseudomonas fluorescens
          Length = 213

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 63/227 (27%), Gaps = 31/227 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + ++ +    D L  +   +                G    L  R  
Sbjct: 2   IRVLVVDDHDLVRTGITRMLADIDGLQVVGQAES---------------GEESLLKAREL 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +  S        ++      C      P          
Sbjct: 47  KPYVVLMDVKMPGIGGLEATRKLLRSH-----PDIKVVAVTVC---EEDPFPTRLLQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    +  +   + L+F   R I      ++   +                   L+
Sbjct: 99  AGYLTKGAGLNEMVQAIRLVFAGQRYISPQIAQQLVFKSFQ--------PSSDSPFDALS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            RE++    I   +    I+  L +S  TVN Y   I  K +  + +
Sbjct: 151 EREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSISSNT 197


>gi|322831866|ref|YP_004211893.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321167067|gb|ADW72766.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602]
          Length = 216

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             +    L+ D   +  G+  +        +         A+Y  N   ++     ++  
Sbjct: 103 GISAVFYLSTDEEHLVEGIRSVIRGECYFSQG-------FASYLINQSGAFRHLHSEETG 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE E L  +  G ++ EIA +L IS NTV  ++ ++ RK + K R+ A ++A
Sbjct: 156 LTHREKEILNKLRVGASNTEIARLLFISENTVKTHLYNLFRKISVKNRTQAASWA 210


>gi|269962780|ref|ZP_06177121.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832470|gb|EEZ86588.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 222

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 172 MFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             + +     K     LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K  
Sbjct: 141 HLRRHSRPVNKSVSAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKID 200

Query: 230 TKTRSGAIAYAVRN 243
            K R  A+ +A  N
Sbjct: 201 VKNRVQALIWAKEN 214


>gi|229588696|ref|YP_002870815.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229360562|emb|CAY47419.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 14/224 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     L R  +     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVVAETDNGVDALQLAREHMPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  ++ +   +             P   +    +         Y     D+  +  
Sbjct: 61  GLEVICRLSST--KQAAPFKVLVLTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLS 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L  +                       L+GRE+  L  ++ G+T
Sbjct: 115 AIKAVLSGYSYFPNQALNSVRSTMGNA--------SEADMVERLSGREMMVLQQLARGRT 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K   ++    I  A RN +V
Sbjct: 167 NKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGLV 210


>gi|84495928|ref|ZP_00994782.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84382696|gb|EAP98577.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 218

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +D      ++ +   +D L  +  ++        ++                 
Sbjct: 2   TRVLLVDDDPLVCGALATMLGSADDLNVVGSVNDGDQVVEAIHR---------------H 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  ++          ++    +    V+          F      +       
Sbjct: 47  RPDIILMDVRMARQDGITTTASLSGLGLETPPKVI------MLTTFDHDDVMLRAVHAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFEL 186
             +   T     I   +  +      +      ++   L +  A   +           L
Sbjct: 101 AGFLLKTASPLDIIAAVQSVAAGEGALSARSARQVVEHLQSDPARDLRRAAEAL--VATL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE + +  ++E  T+ +IA  L +   TV +++A    K   + R G    A R  +
Sbjct: 159 TERERDVVRCVAEEMTTAQIAQELFLGEATVKSHLARAQDKLGAQNRVGVGIIADRAGL 217


>gi|171912243|ref|ZP_02927713.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 224

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 26/236 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L   D   T F + L  R ++LA +            + A+            R 
Sbjct: 7   RARVLLIDND---TGFRTDLGQRINVLANVRVCGEAGDAATGLEAV------------RS 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +   ++  +       L+  +          V      L       +   +      
Sbjct: 52  LTPELAIVEVNLPDRNGISLIPEITS--------VSPLTVVLVLTAHDEVFFGLEALRAG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +++ +     +   +    +  +     +          +      L
Sbjct: 104 AYGYLVKDDIATYLQMAVTQTLRREYFLPPRLVAHLLHGLEHPERF---ASFNPNPLSTL 160

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           T RE+E   W+S G  +  IA  LG+   T+  + A+IM +    T    + +AV 
Sbjct: 161 TDREMEVFQWLSRGYGTKRIAERLGLGIKTIETHRANIMARLDLHTAEELVNFAVE 216


>gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
 gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains)
           [Flavobacteriales bacterium ALC-1]
          Length = 136

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 39/65 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           KD +++ RE E L  I+EG ++ EIA  L +S +T+  ++++++ K   K R+ A+  A 
Sbjct: 72  KDLDISNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKAK 131

Query: 242 RNNIV 246
              I+
Sbjct: 132 SLQII 136


>gi|27381296|ref|NP_772825.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354463|dbj|BAC51450.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 239

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 25/235 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
            L+R    R   V   P  +     ++  +  +       A           +   +   
Sbjct: 27  ALSRGTPMRILIVDDHPIVASGCRAVLADEGEIEILEAADA------EDGECVFIVERPD 80

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  + +   F+L R +                 +   +                 Y
Sbjct: 81  LCVIDINLPTVSGFELARRILERA--------PEARIIMFSMNDDPAFAARAIECGAKGY 132

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S T D   +   +  +   G  +       I       A              +L  RE
Sbjct: 133 VSKTGDPDDLVEAIRTVGSGGTYLPSAIARSIAFAGPALAQ---------SPLSKLNARE 183

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR-KTATKTRSGAIAYAVRNN 244
           +E L  +S GK+  EIA ++  S  TV N  +SIMR K   KT    +  A+ + 
Sbjct: 184 MEILRLLSAGKSLSEIAWLVQSSYKTVAN-TSSIMRQKLGVKTSVELVRLAIDSG 237


>gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917]
 gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917]
          Length = 92

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 39/72 (54%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                       +L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT  K 
Sbjct: 1   MAHGSDSGSPSIDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ + 
Sbjct: 61  RVALLNWAMDHG 72


>gi|254441153|ref|ZP_05054646.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198251231|gb|EDY75546.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 204

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 25/224 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D+L + +  + +                +   + + D +    LD  +   
Sbjct: 5   IADDHDLLRDMLVQFLEKEGSFQTV-----AVGTFDEAAERIEKDDPYDLVLLDYNMPGM 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D ++        +                 T              +   +     + 
Sbjct: 60  NGLDGLKAAIALGGGQ--------RVALISGEATKQIAEVALKAGAAGFVPKSLPAKSLV 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    D +  +                      +LT RE++ L  ++EGK
Sbjct: 112 NAIKFMAMGEQYAPIDFMTAV------------EQTPTNPLADKLTERELQMLKGLTEGK 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L I   TV  ++ ++ RK     R+ A       N+
Sbjct: 160 SNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREANL 203


>gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 202

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 144 LMLLFPKGRIIL--RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + ++  +   +   + R  +     +   N+   +         L  RE+E L  ++EG+
Sbjct: 97  VHIVARENSALSVVQSRFPDFAYHNSEPHNISSPHQPVQQSLVTLNKRELEVLRLLAEGR 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L ++++T+  Y+  I  K    +R+ AI  A +   +
Sbjct: 157 SNQEIADTLIVAKSTIKWYLKQIYSKLNAHSRTQAIVCARQIGFL 201


>gi|293606731|ref|ZP_06689084.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814881|gb|EFF74009.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 212

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  +       ++ +      +A +       S    +         +H+  +  D
Sbjct: 3   LNLLIVDDHLIIRRGLARILEEDPRVALVHDAADAPSALRALRT-------THYDAMVLD 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +   ++    V      D                L        P        +       
Sbjct: 56  VALGERDGLDVLKTVRADY-------------PALGVVMLSVYP---ETQFAVRALRTGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D   +   L+        +       +              D       +L+
Sbjct: 100 HAYLNKGCDPDELLRALVNAAAGKLYVTPAVAELLA--------HTVRQDSSRPPHEQLS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  +  G++   I   L +S NT++ Y + I  K   +T    +AYA  + +
Sbjct: 152 NREFQVLQLLVAGRSVSAIGEQLALSVNTISTYRSRIFEKLGVRTLVELVAYANTHQL 209


>gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 200

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 76/239 (31%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  ++      ++ L      +  +                    GA         
Sbjct: 2   ITIVLADDEALLRKALAKLLPMEGQIQVVAEATD---------------GADAVQATLRH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      D V  +  +   +   V+   T    P                
Sbjct: 47  GPDVLVIDLEMPGTDGLDAVAAIRRARPQQ---VVLMLTRHAKPGV-----LRRALKLGI 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S + + A I   + LL    R I  +      +                  D  LT
Sbjct: 99  QGFVSKSAEPAHIASVIGLLHGGKRWIDPEVSARAVI-----------------DDNPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   SEG +  +IA  L ++  TV NY+++ MRKT  K+R  A  YA  ++ +
Sbjct: 142 DRELDALRLTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSRHEAARYAREHDWL 200


>gi|86139948|ref|ZP_01058513.1| Two Component Transcriptional Regulator, LuxR family protein
           [Roseobacter sp. MED193]
 gi|85823366|gb|EAQ43576.1| Two Component Transcriptional Regulator, LuxR family protein
           [Roseobacter sp. MED193]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           +   +       +   +   +++ +R     +      +  D   +I     +       
Sbjct: 86  IDMAVDALDAGASGILTYNSEMSDLRAAARRVMNGDNYVQPDMAMDI-----FAKLRQAE 140

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +   LT RE + +  + +G T+ +I+  L IS  TV +Y+ S+  K     R  
Sbjct: 141 AKRKEAERLRLTARESQVVRHLMQGMTNRQISAELNISEKTVKHYVGSLKDKFGAANRLE 200

Query: 236 AIAYAVRNN 244
            +  A R  
Sbjct: 201 VVLEAQRLG 209


>gi|311112763|ref|YP_003983985.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310944257|gb|ADP40551.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 208

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 23/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           + LA ++ L+  +    ++       G      VR        LD 
Sbjct: 2   PLRILLADDQQMIREALAMILDLEIDLEVVKQVGR-----GDEVLPAVRETRPDVALLDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +A S              L    F              + +      
Sbjct: 57  EMPGATGIEAAAELARSGLT--SQTGTPVRSLILTTFRRPGYLRRALEAGASGFVVKDGT 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            +++   +       R++      E                  W     LTGRE E L  
Sbjct: 115 ASQLAQAVRRTAAGLRVVDSVLAEE----------------AKWQGSSPLTGRETEVLRA 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
                +  EIA +LG+S  TV N++++ M K     R  A+  A  N  +
Sbjct: 159 AETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRHEAVRIARDNGWL 208


>gi|294013470|ref|YP_003546930.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676800|dbj|BAI98318.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 250

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y        R+   L L+    R++      E+    +  +           
Sbjct: 97  AFRLGALAYIVKEISCDRLVATLRLVAMGERVLPPQLADELQ---SRPSLTDALEVERPV 153

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L W+  G  +  I+  + IS  TV  ++ +++RK   K R+ A  +A 
Sbjct: 154 DAACLSDRELEILRWLIMGCPNKVISKRMDISEATVKVHVKAVLRKLRVKNRTQAAIWAA 213

Query: 242 RNNI 245
            + +
Sbjct: 214 NHGM 217


>gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 515

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 85/252 (33%), Gaps = 20/252 (7%)

Query: 1   MNFEIQQVNIVLNREDEQ------RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE 54
           M+ E ++   +  R+ E+      R + V+     +D    +   D  V          E
Sbjct: 254 MDLEPRKQAELALRQSEECFAKAFRMAPVATAIVTADRFELLDVNDAFVGMAGHARD--E 311

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
            +G S   +  W    E+     + S    D     A  +       ++       PV  
Sbjct: 312 LLGKSADEIGLW---AERGARQQIDSALARDGNVRNADVQIRTRDGDVRDCVVSAEPV-- 366

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                     G D    +L     R R  + L++     +     +   L+         
Sbjct: 367 -------AIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRA 419

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +      +  +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R 
Sbjct: 420 NAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRG 479

Query: 235 GAIAYAVRNNIV 246
            AI +A    IV
Sbjct: 480 EAIVWARERGIV 491


>gi|84625936|ref|YP_453308.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188579161|ref|YP_001916090.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84369876|dbj|BAE71034.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188523613|gb|ACD61558.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 222

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 18/220 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY--VGASHFLLVRWDLFQEQKLDSIVSS 80
           ++ L    D       L   V   M    L E   V A + L           +D  +  
Sbjct: 1   MTTLLIADDHPLFREALRGAVQRVMPGVQLLEADNVDALYTLADAQPDADLLLMDLNMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              F  +  + +        V+         V                 +   + D   I
Sbjct: 61  AQGFSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  +    R I  +                        +  +LT ++   L  +  G
Sbjct: 113 GRALATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 165 RLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|289706741|ref|ZP_06503085.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289556541|gb|EFD49888.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 224

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + +   G      V         LD  +     
Sbjct: 26  RLLLADDQALVRGALAALLETEPDLTVVAQAASGDEVADAVEAHDVDVALLDIEMPGVDG 85

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +R +     D           L    F          A     +        ++   
Sbjct: 86  LEALRRIRDRGLD--------CAVLMVTTFGRPGYLERALAAGARGFVVKDTPAEQLADA 137

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++                      D        LT REV+ L     G + 
Sbjct: 138 VRAVARGERVVDPSLA----------------VDTLAAGPSPLTPREVDVLREALTGASV 181

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  TV N++++ + KTAT TR  A   A     +
Sbjct: 182 RAIAGRLHLSAGTVRNHLSAAIGKTATSTRGEAATVARDRGWL 224


>gi|227506157|ref|ZP_03936206.1| LuxR family response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197264|gb|EEI77312.1| LuxR family response regulator [Corynebacterium striatum ATCC 6940]
          Length = 216

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 27/233 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +D    S +      +D ++ +            +  +               
Sbjct: 3   IRVFLVDDDPLVRSSLRLYFETTDDISVVAEAANGAECLSMLEQV--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  + +     L+R +           +          F +    +       
Sbjct: 48  DVDIVLADIHMPTMDGITLLRRIKQ----YPSPPVFLAVTS----FDSDDTMLKILQEGG 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFEL 186
             Y         I   +      G ++    +  +     Y  +  +   V    +   L
Sbjct: 100 AGYILKNQRPQSIIDAVREAIHGGTVVAPVAMHRL---VGYIGDAPRKDPVAAAIESHSL 156

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  E+  L  + +G ++ EIA  L IS ++V  +++S++      TR   +  
Sbjct: 157 SNGEINVLKLLLQGNSNSEIAAALEISESSVKKHVSSLIVTFNASTRLNLVTK 209


>gi|154245397|ref|YP_001416355.1| two component LuxR family transcriptional regulator [Xanthobacter
           autotrophicus Py2]
 gi|154159482|gb|ABS66698.1| two component transcriptional regulator, LuxR family [Xanthobacter
           autotrophicus Py2]
          Length = 224

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 30/231 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +       +          A +  +      T  +    +             
Sbjct: 9   LRLVIADDHPLFRGALREAVLGRHADATIEEVGTFDDLTALLERDRD------------- 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +     F  +     ++      V+    E    +               
Sbjct: 56  -FDLILLDLTMPGARGFSGL-IYLRAQYTSLPVVVVSGNEETAVI-------RRCIDLGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   T  VA +R  +  +      +  D         +  A      D    +   LT
Sbjct: 107 SGFIPKTMSVADMRDAVASVLGGEAFVPSDI--------SLGARADAETDAIIARLATLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++V  L  +SEG+ + +IA  L +S  TV  ++++I++K   ++R+ A+ 
Sbjct: 159 PQQVRVLMMLSEGRLNKQIAYELSVSEATVKAHVSAILQKLGVESRTQAVI 209


>gi|295134645|ref|YP_003585321.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294982660|gb|ADF53125.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 208

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 72/217 (33%), Gaps = 23/217 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +I +D  V ++  +  L +      + +       ++   ++   D   DL+        
Sbjct: 5   IIIVDDHVLFSQSLKGLVDS--FDGYRVKAVYGNGKELQGNLKKMDLRPDLILLDVRMPL 62

Query: 96  DKYYNVLQRPTEL-------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                 +Q   +           + +     +   +     Y     D  R +  L  + 
Sbjct: 63  MDGLQTMQWLKQEFPKQKAVALTMENDEETLLKMISFGCRGYLLKDIDPDRFKAALDSVI 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G    ++ + E+                      + + RE+E L ++    T  EIA 
Sbjct: 123 ETGYCFEKELIQEL--------------GKKTSAKEQFSEREIEFLQYVCTEMTYKEIAA 168

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +S  T++ Y  ++  K   ++R G   YA++NN 
Sbjct: 169 KMSLSPKTIDGYRENLFTKLQIRSRVGLAVYAIKNNY 205


>gi|145589988|ref|YP_001156585.1| two component LuxR family transcriptional regulator
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048394|gb|ABP35021.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 207

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 36/238 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       +  +     L                +  +                
Sbjct: 4   RVMLVDDHPAMLMALKSMLQDQLLFEIAGQAQNGEECLRSIKEV---------------N 48

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     FD++R + L      Y  ++                    +   +
Sbjct: 49  PNMVILDLDMPKTDGFDVIRRIGLM-----YPDIRMLVLSSL---DEAVYGGRVRSLGAH 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + + T     I    + +          +     L                 K   ++ 
Sbjct: 101 GFVNKTAGADVILAACVAISQGYNFFTHGKNGNSSL-------------TDNDKLALISD 147

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE++ + ++ +G T+ +I+ +L IS  TV  Y   +  K      +  I +   NNI+
Sbjct: 148 RELQVMKYLGKGNTNQQISDLLHISNKTVATYKTRVFDKLGINNIADLILFCRINNII 205


>gi|167851367|ref|ZP_02476875.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|254296620|ref|ZP_04964076.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157806503|gb|EDO83673.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
          Length = 215

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 57/226 (25%), Gaps = 24/226 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +     ++         E +      L          +D  
Sbjct: 11  ARLLLVDDHPLVRDGLKMRLEAAPGLAVVGEAGNADEAL-----ALAEALAPDLALMDIG 65

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L                     L   +   +           + Y       
Sbjct: 66  MQGMNGIALAGVFHER--------FPAIRVLMLSMHDNVEYVTQAVRAGASGYLLKDSPA 117

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +                      A               LT RE + L  +
Sbjct: 118 TEIVRAIGAVLAGQTFFSEG-----------IAARMIHASAEASPLDRLTPRERDILDAL 166

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++G +S +IA   G+S  TV  +  ++ RK   + ++  I +AV +
Sbjct: 167 AQGLSSKQIAQRNGLSVRTVETHRLNLKRKLDIEGQAELIKFAVEH 212


>gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
 gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420]
          Length = 94

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 K   L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I++KT T  R  
Sbjct: 2   AGGKSDKSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRVA 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|186473151|ref|YP_001860493.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184195483|gb|ACC73447.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 212

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 32/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +I++  +       +     +      +   D   S        T               
Sbjct: 3   SILIVDDHPAFRLVIKTHLLQLLGCQEVFEADNGQSALEMARQFT--------------- 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D++  +  ++             L                    
Sbjct: 48  PDLTILDLDIPRINGLDVLARLRAAQPGM--------RVLILSSHDAATFISRAMRAGAQ 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S + DV  I   +  +     +           +A   A       V   +   L+ 
Sbjct: 100 GFVSKSQDVKEIMRSVEAVMSGYSVFP---------VAPVSAGPGAHGFVEESRLDLLSD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E+  L  +++G ++  I   L IS  TV+++   +M K   +T    + +A R  I
Sbjct: 151 KELVILQMLAKGLSNKTIGDALFISNKTVSSHKTRLMSKVGVETLVELVDFARRCGI 207


>gi|147675562|ref|YP_001218191.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|146317445|gb|ABQ21984.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|227014589|gb|ACP10799.1| transcriptional regulator,LuxR family [Vibrio cholerae O395]
          Length = 209

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +   +E              
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESE-------------- 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IHLRSEYPDLPIV------VISASEEPSVVSQVKSHGVF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L +      +  N          K   LT 
Sbjct: 104 GFIPKSSDMRSLIAALNQVLNGEPYFPAHLLVD-----GFVGNDLAE------KVAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|269795006|ref|YP_003314461.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097191|gb|ACZ21627.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 233

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 61/247 (24%), Gaps = 34/247 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     + +  L   +  L  +  +    S   R  AL               
Sbjct: 2   IRVLLADDHAAVRAGLRFLLESAADLQVVAEVGDGASAVERARAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 L    F              
Sbjct: 47  RPDVVLMDVRMPGTDGITATAAITAEGL---------AEVLVLTTFDLDDYVTGALGAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI----------GLLAAYQANMFKSYD 177
             Y   + +   +   +  +     ++  +    +                     +   
Sbjct: 98  AGYLLKSAEPHELLDAVRRVADGDGVLAPEVTRRVIRALAAAAPASTTPPASTPPSEPEP 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE + L  +  G T+ +IA  L +S  T   +++ ++ K    +R  A 
Sbjct: 158 AKVTRVAGLTPRERDVLAALGRGLTNQQIATELFVSAATAKTHVSRVLMKLGVTSRVQAA 217

Query: 238 AYAVRNN 244
             A    
Sbjct: 218 LVARDAG 224


>gi|90425528|ref|YP_533898.1| response regulator FixJ [Rhodopseudomonas palustris BisB18]
 gi|90107542|gb|ABD89579.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 205

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 44/241 (18%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            + N+ +  +D      +  L +  D    +          +    + E +     +   
Sbjct: 3   PRGNVYVIDDDPAMRDSLEFLLSSVDFEVVL------FESAVAFLEVVETLEFGCVV--- 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +      DL++ +  +       V+             +P  +     
Sbjct: 54  --------SDVRMPGIDGMDLLKRLKANRNPL--PVV------IMTGHGDVPLAVEAMKL 97

Query: 126 MDNRYCSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               +    F+  R+   +      PK  +       EI                   + 
Sbjct: 98  GAIDFIEKPFEDDRLIGMIETALTQPKDGVRSDAIAPEIAA-----------------RI 140

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE + +  +  G ++  IA    IS  T+  Y A++M K    + S  +  A+R 
Sbjct: 141 ETLSPRERQVMDGLVAGLSNKVIAREFDISPRTIEVYRANVMTKMQAGSLSELVRMAIRG 200

Query: 244 N 244
            
Sbjct: 201 G 201


>gi|326773634|ref|ZP_08232917.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus
           C505]
 gi|326636864|gb|EGE37767.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus
           C505]
          Length = 217

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 36/232 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +++  + E     ++ +  R+D L  +           R                   
Sbjct: 10  VRVMIVDDHEIVRRGIAEIIDRADGLDVVAEAGSRAEAVRRAE---------------LV 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +L++ +  S        + +   +    F          A   
Sbjct: 55  RPDVILVDLQLPDGTGIELMQELRDS--------VPQALPIVLTSFDDDEALAEALAAGA 106

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T   A I   +  +     ++    +              +    H     +LT
Sbjct: 107 RAYLLKTVHGAEISDVVRAVASGRVLLDERTVT-------------RRRADHDDPTADLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 154 NAERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 205


>gi|297571637|ref|YP_003697411.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931984|gb|ADH92792.1| two component transcriptional regulator, LuxR family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 207

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 22/211 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D       +   V     +  + E    A         +     +D  +      D++R
Sbjct: 4   DDHEVVRRGIAEVVDRASGLQVIAEAGSVAEAVRRAELMIPHVALVDLRLPDGTGIDIIR 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +           + +   +    F                Y   +   A I   +  + 
Sbjct: 64  ELHER--------VPQVKCIVLTSFDDDDALAEALDAGAKAYLLKSVRGAEITDVIRAVA 115

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++    +              +    H     +LT  E + L  I +G ++ EI  
Sbjct: 116 DGRVLLDERTVT-------------RRRADHDDPTADLTPSERKVLELIGDGLSNREIGE 162

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LG++  TV N+I S++ K   + R+   A+
Sbjct: 163 KLGVAEKTVKNHITSLLSKMGMQRRTQVAAW 193


>gi|190576409|ref|YP_001974254.1| putative two component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014331|emb|CAQ47978.1| putative two component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 221

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L  + +      +D  +     
Sbjct: 9   DHPLFREALRGAVQRVIPGVQLFE-----ADSVEALYALADQHNDADLVLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+ +  + +     +  V+         V     +           +   + D   I   
Sbjct: 64  FNAL--VHMRSLHPHLPVVVVSAREEATVMRRALD------HGALGFIPKSADSDTIGHA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +         +        A       +       +  ELT ++   L  +  G+ +
Sbjct: 116 LGTILDGETWAPPE--------AHNVPPTEREEREVGQRLRELTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  L +S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|326774074|ref|ZP_08233356.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636213|gb|EGE37117.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 34/245 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +S + +  D +  +         T R   LT              
Sbjct: 1   MRVLIVDDDALVAQSLSTILSVEDDVEVVGLGCSGPEATERYRELT-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +   +             +F   F      +       
Sbjct: 47  -PDILLMDIQMPGGDGLSAAERILAED--------AGARIVFLTTFSDDEYIVRALKMGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY----------D 177
             Y     DVA++   L  +     ++  + L     +        +            D
Sbjct: 98  RGYLIK-QDVAQVAPALRSVMAGVCVLEGEVLERSTTMGLGGPAGGREQAEEGPGASAKD 156

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +       LT RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+   
Sbjct: 157 LRSTAFAALTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVA 216

Query: 238 AYAVR 242
               R
Sbjct: 217 VMYYR 221


>gi|188591280|ref|YP_001795880.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|170938174|emb|CAP63160.1| putative transcriptional regulator, response receiver CheY domain,
           HTH LuxR domain [Cupriavidus taiwanensis LMG 19424]
          Length = 204

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 18/189 (9%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
              + L R        +D     +   D VR +  +        +            T  
Sbjct: 33  REGYRLAREHRPGLVLVDVERFGNAGIDFVRRVVATL-----PGVPLL---VLSGNDTAQ 84

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +       + + +    V  +   +  +     +     L  +  L   Q        
Sbjct: 85  APVRALRAGAHGFVAKQRGVEDVMQAVRGVLSGYLVFPLQTLETVRQLGEQQQAGLPR-- 142

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE+  L +++ G ++  IA  L IS  TV+ + A+IM K    +    +
Sbjct: 143 --------LSNREITILQYLARGHSNKAIAAQLLISSKTVSTHKANIMAKLHVGSLVEMV 194

Query: 238 AYAVRNNIV 246
            YA R+ +V
Sbjct: 195 DYARRHQLV 203


>gi|87309029|ref|ZP_01091167.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
 gi|87288372|gb|EAQ80268.1| two-component system response regulator-like protein (Nar family
           protein) [Blastopirellula marina DSM 3645]
          Length = 220

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 14/226 (6%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDS 76
             T  V+ +    D       L   ++    +    E    S  F L R        +D 
Sbjct: 2   ATTLSVAKILIVDDHPLVREGLTILLNAHCDLEVCGEASDESGAFALFREQKPDLTIVDV 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++S    +L++ +             +   L    +                Y +    
Sbjct: 62  SLASGQGINLIKQILAC-----DP---QAKTLVVSGYDESLYAERSLRAGACGYLNKQEL 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + +I   +  +    R               +  +      +       LT RE E  T 
Sbjct: 114 IDKIIDMVRAILEGKRFP---LWGATDW--QFPPSDGVIPSIPSDPINRLTNREREIFTM 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           I  G+TS EIA  L +S +TV+ +   + RK + K+ +  I  A++
Sbjct: 169 IGHGQTSAEIASQLNLSVHTVDTHRERLCRKISAKSSAELIRRAMQ 214


>gi|91975978|ref|YP_568637.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682434|gb|ABE38736.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 209

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 64/239 (26%), Gaps = 37/239 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +     + +  +D      +S + + +                     +    G + 
Sbjct: 1   MNEKSSGREVFVVDDDPAVRETLSIVLSAAGY-----------------EVVCFADGDAL 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             + R        LD  +      D++  +   +      +     +        +   +
Sbjct: 44  LTVARSRSPACILLDVHIPGRSGLDVLAELHAEDYP--APIFMISGKG------DIAMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F    I      +      I       +   A    +         
Sbjct: 96  NAIKNGALDFIEKPFRGKEI------VTRVEEAIDAYSRRSVSGKAVKAPSYIFPGKEP- 148

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT RE E L   + G T+ E    LGIS  T+  + A+IM+K   +  +  +  
Sbjct: 149 -----LTLREREVLELFASGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|227891992|ref|ZP_04009797.1| two-component response regulator [Lactobacillus salivarius ATCC
           11741]
 gi|227866196|gb|EEJ73617.1| two-component response regulator [Lactobacillus salivarius ATCC
           11741]
          Length = 201

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 29/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                   +  LA ++ L+   S        TE  G +    V         LD  +   
Sbjct: 6   LAEDQQMLNSALAMLLDLEDDFSVVG-----TETDGQAALEKVITLKPDVAILDIEMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++ + + L + D           +    F          A   N Y         + 
Sbjct: 61  SGLEIAKQLRLMKLDI--------KIIILTTFARSKYFKDALAARVNGYLLKDSPSDSLV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     +                 ++  + D        LT RE E L  +    
Sbjct: 113 NAIKTIMNGDTVFDP----------KLVTSVLNTVDNP------LTDREQEILAALKTCA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A + N +
Sbjct: 157 STKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRNWI 201


>gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 530

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 1/138 (0%)

Query: 110 CPVFHTLPENITPPAGMDNRYC-SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
             +                 Y   L     R  +       +     R    +   +AA 
Sbjct: 383 RGIAGAELTAKDRLLAAAEAYQGLLEPRPHRPALDARGAADRLGEEARAGRLDAESVAAV 442

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A   +           LT REVE L  +++G+++ EIA  L I+  T  N++  +  K 
Sbjct: 443 LAAAGQRQSRRTPWPAGLTDREVEILRLVAQGRSNKEIAAELFIAEKTARNHVERVYAKL 502

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A   A+   +V
Sbjct: 503 GVNNRTQAGLAAIDRGLV 520


>gi|325921641|ref|ZP_08183478.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325547875|gb|EGD18892.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 215

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 68/238 (28%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + ++   +  +   +   S   ++  L               
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDIDVVGEAESGESALPQIRQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +    D  +      ++   +   +      ++    +   P                
Sbjct: 48  KPEIVLCDLHLPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L      +  +     +     L+
Sbjct: 100 SGYVGKGGDAQELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 151 PRELEVALLLTQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDSIALARLANQYGL 208


>gi|288962256|ref|YP_003452551.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914522|dbj|BAI76007.1| two-component response regulator [Azospirillum sp. B510]
          Length = 240

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 68/232 (29%), Gaps = 17/232 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSW--TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            H   R  L   +              +  L     A+         +    LD  +   
Sbjct: 8   DHPLFRDALELSVRQAWPDAEISCIGSLLELPAVRDAAEGGATPALRYDLVVLDWRMPGA 67

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +  +       V+                 +         +   T     + 
Sbjct: 68  EGSNPISVLRQTGIQGPVAVV--------TGAEDSLTALEVLRCGAEAFLPKTTPRRVLA 119

Query: 142 IGLMLLFPKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             L L+   G  + +D   ++         +   + +   + +        LT RE + L
Sbjct: 120 QALRLVAEGGSFVPKDVALDLMHMTEMSLDIDEAEESEAPALEGEGAPASPLTDREQQVL 179

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + ++ G T+ EI   L +   TV  +   I+RK   + R+ A+  A +  ++
Sbjct: 180 SMLATGATNKEIGRNLSLQEVTVKLHTRRILRKLGARNRTDAVRRAQQAGLL 231


>gi|227540526|ref|ZP_03970575.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239608|gb|EEI89623.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
          Length = 209

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 73/223 (32%), Gaps = 19/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   ++    +  A     GAS    ++        LD  +     
Sbjct: 3   EIMITDDHPMVLEGLKNVLATEEDLNLAACFTDGASLVAGLKEKQPDILLLDINLPDINS 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +LV  +  +  D           +   V +      +  +   + Y       A I  G
Sbjct: 63  IELVARLKSAHPDM--------KIIALSVHNEFAVINSMLSEGASGYIQKNASGAEIITG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++             +   +    +   +  +        T RE E L   ++G TS
Sbjct: 115 IQTVYAGE--------RFLCAQSKLIMDKKTAEGLRNVPKI--TRREKEILQEAAKGLTS 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L IS +TV ++  +++ K   K  +  I  A+   ++
Sbjct: 165 TEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEYGLI 207


>gi|254438204|ref|ZP_05051698.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198253650|gb|EDY77964.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 204

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 25/224 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D+L + +  + +                +   + + D +    LD  +   
Sbjct: 5   IADDHDLLRDMLVQFLEKEGSFQTV-----AVGTFDEAAERIEKDDPYDLVLLDYNMPGM 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D ++        +                 T              +   +     + 
Sbjct: 60  NGLDGLKAAIALGGGQ--------RVALISGEATKQIAEVALEAGAAGFVPKSLPAKSLV 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    D +  +                      +LT RE++ L  ++EGK
Sbjct: 112 NAIKFMAMGEQYAPIDFMTAV------------EQTPTNPLADKLTERELQMLKGLTEGK 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ EIA  L I   TV  ++ ++ RK     R+ A       N+
Sbjct: 160 SNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREANL 203


>gi|21233483|ref|NP_639400.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770447|ref|YP_245209.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115332|gb|AAM43282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575779|gb|AAY51189.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 222

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L           +D  +     
Sbjct: 9   DHPLFREALRGAVQRVMPGVELFE-----ADNVDALYTLADAQPDADLLLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  + +        V+         V                 +   + D   I   
Sbjct: 64  FSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTIGRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +    R I  +                        +  +LT ++   L  +  G+ +
Sbjct: 116 LATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|119717344|ref|YP_924309.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538005|gb|ABL82622.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 212

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  + E   S ++ +    D L  +       +    +  L               
Sbjct: 2   TTVLLVDDHELIRSGLAAVIDLEDDLTVVGTAATVAAGLAAIAQLA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D+ R +          VL         +     +         
Sbjct: 48  -PDVVVADLQLPDGTGLDIARAVRGENDSTGLVVL--------TMHSGDDQIFAAMEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +                   + +     M +       +   L+
Sbjct: 99  SGFVGKEAPAQEVVRTIRHAA---------VSPRSFVCSGLAEAMVRRVGAGTAR---LS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++EG  +  IA  L +S +T  +++  I +K     R+ A+  A+R  ++
Sbjct: 147 DREHDVLLLLAEGLGTAAIAERLFMSESTAKSHLGHIYQKLGAANRAQALVTAMRIGLL 205


>gi|325927987|ref|ZP_08189208.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541672|gb|EGD13193.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 222

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L           +D  +     
Sbjct: 9   DHPLFREALRGAVQRVMPGVELFE-----ADNVDALYTLADAQPDADLLLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  + +        V+         V                 +   + D   I   
Sbjct: 64  FSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTIGRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +    R I  +                        +  +LT ++   L  +  G+ +
Sbjct: 116 LATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|324989912|gb|EGC21854.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
          Length = 199

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 65/225 (28%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D LA+++ L   V             G      ++ +      LD  +   
Sbjct: 5   LAEDQSMLRDALAQLLQLQPDVE-----EVYQAADGQKAIDCLKSETLDVAILDVEMPHQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  +  +  +           +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +  +                       L+ +E   L   + G 
Sbjct: 112 KTIQTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 155 SNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199


>gi|116493461|ref|YP_805196.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103611|gb|ABJ68754.1| DNA-binding response regulator (Rec-wHTH domains) [Pediococcus
           pentosaceus ATCC 25745]
          Length = 191

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 53/225 (23%), Gaps = 39/225 (17%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +S L    D L  +            +  L                     LD  +   
Sbjct: 5   ALSQLLNLEDNLEVLGSATNGKHALAEIQRL---------------QPNVAILDIEMPMM 49

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++   +   +             +    F                Y         + 
Sbjct: 50  SGLEVAEVLHDKQL--------ATKVIILTTFAQKTYFEKAVEVEVAGYLLKDSPSDDLI 101

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +     +   + +                          L+ RE+  L     G 
Sbjct: 102 ETINKVMMGRTVYDPELV----------------VTALSSNKNPLSEREMSVLKAAVSGD 145

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +A  L +S  TV NY+++I  K     R  AI  A +N  +
Sbjct: 146 ATKVMAQKLFLSEGTVRNYLSAIFSKLGVHNRLEAIEVAKKNKWI 190


>gi|285018196|ref|YP_003375907.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283473414|emb|CBA15919.1| probable two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 57/226 (25%), Gaps = 21/226 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L+R++     V          + +      L          +D  
Sbjct: 1   MRVIIVDDHTLVRAGLSRLLQTFADVDVVAEASNAQQALD-----LTVLHRPDLVLMDLS 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +     ++        +                          +       
Sbjct: 56  LPGRSGLDAL-----TDVLHSAPKTRVVMMSM---HDDPVHVRDALDRGATGFVVKDAAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + L         +         ++A                   L+ R+ E L  I
Sbjct: 108 LELELALRAANANQMFLSPQI--SSKMIAPMLGRERPVGIAA------LSPRQREILRQI 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             G+++ EIA  LGIS  TV  + A +M     +  +  +  A R+
Sbjct: 160 GRGQSNKEIASDLGISVKTVETHRARMMESLGCRRANDLVLLAARH 205


>gi|70728347|ref|YP_258096.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342646|gb|AAY90252.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 848

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 63/222 (28%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
                 + L+R++             A  E +    +LLV     +     +        
Sbjct: 643 RPELAQEALSRLLRHFRGPQALQAPPATLELIPGIEYLLVL---AEVHLGRAQAPIATLQ 699

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L+              +Q        +                            +  +
Sbjct: 700 GLLARAQRHGMQGLEAEVQLALAEVAHLQGNPALAQEALQAG--------------QALV 745

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +        + L A        S      ++  L+ RE++ L  I++G ++ 
Sbjct: 746 QRCNLPQALHELRLRQPLLLAAGEALQTPSSAGPLENRESLLSLRELQVLQLIAQGCSNQ 805

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L IS +TV  +   I  K   + R+ A+A A    ++
Sbjct: 806 QIAEQLFISLHTVKTHGRRIHSKLGVERRTQAVAKAQALGLM 847


>gi|254230090|ref|ZP_04923487.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262392985|ref|YP_003284839.1| transcriptional regulator LuxR family [Vibrio sp. Ex25]
 gi|151937379|gb|EDN56240.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262336579|gb|ACY50374.1| transcriptional regulator LuxR family [Vibrio sp. Ex25]
          Length = 209

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 48/171 (28%), Gaps = 19/171 (11%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +           L                     +    
Sbjct: 52  PDLVLLDLKMPGANGMSGLIHLRAEH-----PDLPIVVVS---ASEEPAIVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               + +    K   LT 
Sbjct: 104 GFIPKSSDMRELVNALNQVLNGDPYFPEGLITN-----------NAACNDLAEKIAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203


>gi|325695633|gb|EGD37533.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 199

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 64/222 (28%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +     +  + +   G      ++ +      LD  +      
Sbjct: 3   LLLAEDQSMLRDALAQLLQLQPDVKEVYQAADGQKAIDCLKSETLDVAILDVEMPHQTGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +  +  +           +    F              + Y      +A +   +
Sbjct: 63  DVLEWVRANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLMKTI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +    + +  +                       L+ +E   L   + G ++ 
Sbjct: 115 HTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAATGLSNK 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 158 EIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199


>gi|317048150|ref|YP_004115798.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316949767|gb|ADU69242.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 206

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 59/217 (27%), Gaps = 32/217 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFDLVRC 89
           +D   S    +  L                              LD  +     F +V  
Sbjct: 8   VDDDESVRSALSNLLSSENYDVIAFATAQAFLDHPFPAVPGCLILDINMPGADGFAVVNA 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +                 +F   F T+P  +         + +   D  ++   +     
Sbjct: 68  LNARGYAI--------PTIFLTGFGTIPVTVRAMKTGACEFLTKPVDPEQLLQAV----- 114

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                      E   +A       +       +   LT RE E +     G  + +IA  
Sbjct: 115 ----------AEALQMAEENLASSQEKYDITSRHLSLTPRESEVMLLAISGLLNKQIAAE 164

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +GIS  T   +   +M K   ++ S  +  A R NI+
Sbjct: 165 MGISEITAKVHKRRVMEKMNVRSLSDLVRAAERLNIL 201


>gi|323492273|ref|ZP_08097431.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323313586|gb|EGA66692.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 222

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I+ D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 114 VSLLLKGMDKIMNDEMWLSRKVAQDYIEHFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 174 SNIQIAEELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|239834829|ref|ZP_04683157.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           intermedium LMG 3301]
 gi|239822892|gb|EEQ94461.1| two component transcriptional regulator, LuxR family [Ochrobactrum
           intermedium LMG 3301]
          Length = 235

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 68/237 (28%), Gaps = 40/237 (16%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E +Q  +++  +DE     +S L                   +     +          
Sbjct: 28  KETEQPLVIIVDDDEAVREALSDLI-----------------LSAGFRPVAFGSTRELVG 70

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
               +      LD  +      DL R +A +   K   ++      F      +P  +  
Sbjct: 71  TELLEAPGCLILDVRMPGTSGLDLQRQLAQNGNPK--PII------FLTGHGDIPMTVEA 122

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + +       +   +         I  D       +             +  +
Sbjct: 123 MKAGAVDFLTKPVRDQTLLDAVASA------IDMDARRRAQSVI---------VKRNIER 167

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              LT RE E L  ++ G+ + +IA  LGIS  TV  +  ++MRK    +    I  
Sbjct: 168 HMTLTPREREVLREVARGRLNKQIAFDLGISEVTVKLHRGNVMRKMEASSIGELIRI 224


>gi|226228852|ref|YP_002762958.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092043|dbj|BAH40488.1| putative NarL family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 239

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 8/193 (4%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           +    G +   +    +     +   + +   F+L+R +           +     +   
Sbjct: 47  VVGQCGTAEDAIAITPIAAPDVVLVDIHTPHAFELLRALKA------PPSV--VRVVAFA 98

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V     +         + + +    V  I   ++                +    +  A+
Sbjct: 99  VGEHERDIDRCAEAGVDGFVTEDVTVEEIANAVLAARCGELNCSPRSAAMLLRRLSVLAS 158

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           +  + +        LT RE + L  +  G ++  IA  L I   TV N++  I+ K   +
Sbjct: 159 LTSATNAMSNVVAPLTSREQDILGLLVTGCSNKVIAGELHIQTTTVKNHVHRILEKLGVR 218

Query: 232 TRSGAIAYAVRNN 244
           TR  A A      
Sbjct: 219 TRIEAAARVRSMG 231


>gi|209521727|ref|ZP_03270414.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209497844|gb|EDZ98012.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 293

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 31/235 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           + +R   +  L  + D LAR    D                                + D
Sbjct: 9   NPERRDGLKALLRQIDRLARFTEADEWRLLERPFKRY--------------------RPD 48

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V      D +    +     ++  L+                                
Sbjct: 49  LVVID--WEDWMSVAQVRALLSHFPDLRI---SVLTDGTVPALVRALMDEGVLGVVPRDT 103

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREV 191
           D   I   L ++   G  +    L     L         +              L+ R+ 
Sbjct: 104 DPCLIVRALEMVLLGGHYVPPGALAIDPPLPTDTTIRPFDEECPPPRRNKLSSGLSPRQE 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +  +  G  +  IA  LGIS  TV  ++ SI ++     R+ A+  A+ N  +
Sbjct: 164 QIMRCVHMGSANKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAAV--ALYNGWL 216


>gi|260429733|ref|ZP_05783709.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260419216|gb|EEX12470.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 241

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P  SD LA  + L     +     +  + +GA+  L+   +L      D  + 
Sbjct: 16  VVIVDDHPLYSDALAAALQLV----FEGVKVSKAQTLGAALDLIESGELPDLVMFDLKLP 71

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                   + +  +                     ++             +         
Sbjct: 72  DVCGISGFQRLRAAL-----PDAPILVISSLT---SVQVVQALMEEGAAGFLPKDASAQL 123

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +R  L  +    + +      +   +A    + F   D    K  ELT ++   +  I  
Sbjct: 124 LRNALQEIASGRKYVHSGY--QSCPVAMVPEDRF---DASHPKLAELTPQQKRIMKLICA 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GK + +IA  L ++  TV  +I +++R+   + R+ A   
Sbjct: 179 GKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQAAVL 218


>gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037]
          Length = 217

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               + RD L ++        N     +     + ELT RE++ L+ + +G ++ +IA  
Sbjct: 124 GENWLSRDILNQLIGYLLSLNNTVGELETKL--EMELTRRELQVLSALCQGGSNLDIADS 181

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L +S +TV +++ SI RK   K R  AI +A RN
Sbjct: 182 LFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKRN 215


>gi|39937308|ref|NP_949584.1| response regulator FixJ [Rhodopseudomonas palustris CGA009]
 gi|192293088|ref|YP_001993693.1| response regulator FixJ [Rhodopseudomonas palustris TIE-1]
 gi|39651166|emb|CAE29689.1| two-component nitrogen fixation transcriptional regulator fixJ,
           LuxR family [Rhodopseudomonas palustris CGA009]
 gi|192286837|gb|ACF03218.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 203

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 35/221 (15%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQ----KLDSIVSSDWPFDLV 87
           +  +D  ++    +  L    G    L        DL   +      D  +      DL+
Sbjct: 6   VHVIDDDLAMRESIEFLLSSAGYEVKLYESAQTFLDLPDVEFGCILSDVRMPGIDGLDLL 65

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           +    +          +   L       +P  +       + +    FD  R+   + L 
Sbjct: 66  KRQKAAGS--------KLPVLIMTGHGDVPLAVEAMKLGASDFIEKPFDDDRLIGLIELA 117

Query: 148 F--PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +          +I                   +   L+ RE + +  +  G ++  
Sbjct: 118 LKQAQEGAKSEAVTQDIAT-----------------RIQSLSPRERQVMDGLIAGMSNKV 160

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    IS  T+  Y A++M K    + S  +  A+R  ++
Sbjct: 161 IAREFDISPRTIEVYRANVMTKMQATSLSELVRMAMRGGVI 201


>gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
 gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
          Length = 201

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 63/208 (30%), Gaps = 23/208 (11%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++     T  +      V  +H       +   +  D ++       +     L +    
Sbjct: 15  VETGELITEELAEHGYTVITAHDGESGLAMILREAPDLVLCDVGMPGMTGFELLEQLRTL 74

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                    +F          +       + Y +   D   +   +     +        
Sbjct: 75  APRYAEIPFVFLTAMAQRESELRGRRLGADDYVTKPVDFEILISIVQTRLAR-------- 126

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                          +          +L+ RE E L W + GKTS EIA ILG+S+ TV+
Sbjct: 127 ---------------RPRTHTAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVD 171

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ +   K    TR  A+  A  + I+
Sbjct: 172 FHMDNAREKLGVATRIEAVVRASSSGII 199


>gi|269216624|ref|ZP_06160478.1| DNA-binding response regulator [Slackia exigua ATCC 700122]
 gi|269130153|gb|EEZ61235.1| DNA-binding response regulator [Slackia exigua ATCC 700122]
          Length = 211

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 18/226 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +   V   P   + L  ++     +             G     L           D  
Sbjct: 1   MKLVIVDDDPIVRESLGIILDAQADIEVVAF-----GSDGDDAVRLFEEHAPDVLLSDIR 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +S           A  E  ++         +F   F      +         Y     DV
Sbjct: 56  MSGRDGLS-----AAEELLRHDP---EARVVFLTTFSDDEYIVRALKMGARGYLIK-QDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A I   L  +     ++  + L     +A                   LT RE E +  +
Sbjct: 107 ASIAPALRAVMAGQNVLEGEVLERAAFMAGGIGG----SRTDESALSSLTEREREVVRAV 162

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +EG  + E A +L +S  T+ N+I+S++ K   + R+    +  R 
Sbjct: 163 AEGLDNAEAADMLCMSEGTLRNHISSVLAKLGLRNRTQIAVFYYRR 208


>gi|170692623|ref|ZP_02883785.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
 gi|170142279|gb|EDT10445.1| transcriptional regulator, LuxR family [Burkholderia graminis
           C4D1M]
          Length = 332

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
            R+ +++ ++           +      +G + F          +K   +++S      +
Sbjct: 86  RRAPVISPLVRFGSAQDRIEFVRQRIRQLGFNSFSYTATRTSAHRKTMFVLTSYESQSWL 145

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT----------PPAGMDNRY------- 130
                    +    +   +    P      +                G+ +         
Sbjct: 146 TRYFRERYFELDPRVALASPTGMPFLWNTVDMRADLPRAQMRSERLGGLIDMLEATGRKS 205

Query: 131 ---CSLTFDVARIRIGLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKS-------YDV 178
                +      +   L         R +    + E  + A        +          
Sbjct: 206 GILTQMPLPEPELSASLCFNSEIANPRWMTESIVAETLMFAHTIHEFIWTHAKSVIGMTP 265

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+  +   L  + +G+   EIA  LG+S + V+ ++  + +    + R   I 
Sbjct: 266 AQQHRVTLSELQHAVLKAVVQGQRDKEIAYFLGLSPHNVDYHLRRLRQLFNVRNRVQLIN 325

Query: 239 YA 240
            A
Sbjct: 326 VA 327


>gi|289666156|ref|ZP_06487737.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670749|ref|ZP_06491824.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 222

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L           +D  +     
Sbjct: 9   DHPLFREALRGAVQRVMPGVQLFE-----ADTVDALYTLADAQPDADLLLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  + +        V+         V                 +   + D   I   
Sbjct: 64  FSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTIGRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +    R I  +                        +  +LT ++   L  +  G+ +
Sbjct: 116 LATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|111224287|ref|YP_715081.1| LuxR family transcriptional regulator [Frankia alni ACN14a]
 gi|111151819|emb|CAJ63539.1| Putative LuxR-family transcriptional regulator [Frankia alni
           ACN14a]
          Length = 349

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK-----GRIILRDR 158
                  P+  ++P     PA        L     + +  L L + +       +     
Sbjct: 202 AVAARTEPLSTSMPPGHRAPAARAVGAVPLPRSPGQPQESLRLAYRELQEVTEHVADPLL 261

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
              IG ++     +        G+   LT RE+E L  ++ G ++ E A  L +S  TV 
Sbjct: 262 RGRIGGVSELLRGLLDQEAKVGGRLA-LTPRELEVLAQVALGLSNVETARRLTVSPETVK 320

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            Y+ SIMRK   + R+ A+  A +  ++
Sbjct: 321 AYLRSIMRKLGVRNRTAAVHAARQLGML 348


>gi|269976896|ref|ZP_06183870.1| two-component system response regulator [Mobiluncus mulieris 28-1]
 gi|306819473|ref|ZP_07453180.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701243|ref|ZP_07638265.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|269934727|gb|EEZ91287.1| two-component system response regulator [Mobiluncus mulieris 28-1]
 gi|304647765|gb|EFM45083.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613637|gb|EFN92884.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 201

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +  L      L  +            +  +T              
Sbjct: 2   ISVVLADDQALVRGALKALLELEGDLEVVGEAGTGEELLATVAKVT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +             +   L    F              
Sbjct: 48  -PAVAVVDIEMPDLDGIGATAKIRA--------AHPQTRVLILTTFGRPGYLRRALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   GR++      E                  +  +  LT
Sbjct: 99  SGFMVKDTPSQELARAVREIAAGGRVVDPKLAAE----------------SLFEGENPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G  +  IA  + +S  TV NY++S + KT   T +GA  YA     +
Sbjct: 143 PREQEVLREVEAGHHTATIAKTIYLSPGTVRNYLSSAISKTHADTSAGAARYARDQGWL 201


>gi|167836939|ref|ZP_02463822.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 210

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 60/223 (26%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    ++ +   ++    +  + E    A    L+          D  +     
Sbjct: 4   QVLIADDHPLVLLGVRHMLAGMGDVSIVGEAHDPAGLLALLATTPCDIVITDFAMPDQRA 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +         +       +   +        T          S   D+  +   
Sbjct: 64  ADGLAMLTAIR-----DGHPSVRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDELPRA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                 +  +                +L+ RE+E +   + G T 
Sbjct: 119 VGAVCQGRP-----------FVGTHAGAASGLAMRATDAPPQLSPREIEVVRLCATGMTM 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA   G S  TV+ +  + M K   K+      YA  N +V
Sbjct: 168 TDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATENGLV 210


>gi|188993657|ref|YP_001905667.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167735417|emb|CAP53632.1| Two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. campestris]
          Length = 274

 Score = 93.8 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 28/227 (12%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV------------GASHFLLVRWDLFQEQK 73
           LP     +  ++  D    +   +    + V             A + L           
Sbjct: 46  LPIPGPTMTTLLIADDHPLFREALRGAVQRVMPGVELFEADNVDALYTLADAQPDADLLL 105

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +     F  +  + +        V+         V                 +   
Sbjct: 106 MDLNMPGAQGFSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPK 157

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           + D   I   L  +    R I  +                        +  +LT ++   
Sbjct: 158 SADSDTIGRALATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRV 209

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L  +  G+ + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 210 LQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 256


>gi|115524826|ref|YP_781737.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115518773|gb|ABJ06757.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 210

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 65/228 (28%), Gaps = 23/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P  +     +   D  +       A +   G         +      LD  
Sbjct: 1   MRVLIVDDHPIIASGCRALFAGDPEIEILEAHDAESGERGF------VTERPDVCVLDIN 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F+L R +   E             +   +                 Y S   D 
Sbjct: 55  LPGVSGFELARRILARE--------PGARIIMFSMNDDPAFAARAIEAGAKGYVSKAGDP 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  +       I   A               +  +L  RE+E L  I
Sbjct: 107 CDLADAIREVGEGGVYLAPATAKSIAFAA---------IGSPENRLAKLNAREIEILRLI 157

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + G +  EIA  +  S  T+ N  + + +K   ++ +  +  A+++ +
Sbjct: 158 AAGNSLSEIAWQVRASYKTIANTSSLMRQKLGVRSSAELMRLAIQSGL 205


>gi|330809493|ref|YP_004353955.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377601|gb|AEA68951.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 212

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +        + L        ++           ++                  
Sbjct: 1   MNILLVDDHAVVRQGYASLLRVLMPDLQVREAATGEEALSQVQEQV-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +           L +   LF  +   LP          
Sbjct: 47  -PHLVIMDFGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +      I +    ++            S      +   +T
Sbjct: 98  AGYLTKNSAPQVLVEAVRRVLAGHVYIEQSLATQLA--------CTSSRQDVDPRLQCMT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G  +  IA  L IS  TV+N++  +  K    + +  +   +   +V
Sbjct: 150 QRELEIFVMLAKGTPARTIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVHLGIDMGVV 208


>gi|323358600|ref|YP_004224996.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274971|dbj|BAJ75116.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 224

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 58/196 (29%), Gaps = 5/196 (2%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
              +   +      + VG +   L    +    + D ++            A + +    
Sbjct: 19  RAGLRLVLGTDRGIQVVGEAADGLEAESVIARHQPDVVLMDIRMPRCDGLTATAREVAAD 78

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
                   +    F    + +         +       A +   +        ++    L
Sbjct: 79  PSRAI---IVLTTFDADEDVVRALRAGARGFLLKDAPPAELVAAVRAAASGRSVLAPGVL 135

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            ++  LA    +              LT RE E    ++ G ++ +I+  L +S  TV  
Sbjct: 136 DQVIRLA--ADHTRLPTAAEREALASLTPREREVAAAVARGASNADISAELFLSLPTVKT 193

Query: 220 YIASIMRKTATKTRSG 235
           ++  ++ K   ++R+ 
Sbjct: 194 HVGRVLTKLGVESRTQ 209


>gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
 gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator
           [Ralstonia solanacearum PSI07]
          Length = 201

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 61/213 (28%), Gaps = 28/213 (13%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           A    L               + G +    +  +       D  +     F+L+  +   
Sbjct: 15  AETAELISEALLEHGFAVTVTHDGEAGLAALLREAPDLVLCDVGMPGMTGFELLERIGAL 74

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                         +F          +       + Y +   D   +   +     +   
Sbjct: 75  -----APRFAEIPFVFLTAMAQRDSELKGRRLGADDYVTKPVDFEILVSIIETRLARNAR 129

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                                           L+ REVE L W + GKTS EIA ILG+S
Sbjct: 130 P-----------------------RSPAPAVPLSEREVEVLAWSARGKTSGEIATILGLS 166

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + TV+ +I +  +K    TR  A+  A    I+
Sbjct: 167 KRTVDFHIDNARQKLGVATRIEAVVKASSAGII 199


>gi|260779547|ref|ZP_05888437.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604356|gb|EEX30660.1| transcriptional regulator LuxR family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 211

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 24/216 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R+ L   +       +         + + A   +L + D      LD  +     
Sbjct: 12  DHPLFRNALFQSVHMAVSGANLLE-----ADSLDALLAVLAKEDEPDLLLLDLKMPGANG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +     D    ++                     +     +   + D+  +   
Sbjct: 67  MSGLIQLRAEYPDM--PIV------VVSASEEPSVVTQVKSHGAFGFIPKSSDMRELVSA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +           +               + +    K   LT ++ + L  +S+G  +
Sbjct: 119 LNQVLSGEPFFPEGSITN-----------NAACNDLAEKIATLTPQQYKVLGMLSDGLLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 168 KQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|300771307|ref|ZP_07081183.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761977|gb|EFK58797.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 209

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 19/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L   ++    +  A     GAS    ++        LD  +     
Sbjct: 3   EIMITDDHPMVLEGLKNVLATEEDLNLAACFTDGASLVAGLKEKQPDILLLDINLPDINS 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +LV  +  +  D    ++         V +++           + Y       A I  G
Sbjct: 63  IELVARLKSAHPDMK--IIALSVHNEFAVINSMLTE------GASGYIQKNASGAEIITG 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++  G          +   +    +   +  +        T RE E L   ++G TS
Sbjct: 115 IQTVYAGG--------RFLCAQSKLIMDKKTAEGLRNVPKI--TRREKEILQEAAKGLTS 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA +L IS +TV ++  +++ K   K  +  I  A+   ++
Sbjct: 165 TEIADVLFISSHTVESHRKNLIEKFKVKNIASVIGLALEYGLI 207


>gi|238025347|ref|YP_002909579.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880012|gb|ACR32344.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 214

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 67/222 (30%), Gaps = 18/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +  T       E   G +   LVR    Q   LD  +     
Sbjct: 3   EVLLADDHAMVRDGLRYILQNTSGFQVAGEAADGPATLALVRGTGAQLLVLDLSMPGG-G 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+  +                 L   +       +       + Y +       +   
Sbjct: 62  VELIGKIRQEA--------PALRILVLTMHAEQQYAVRVFRAGASGYMTKESASTELVDA 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   G  +       +      + +           D  L+GRE++    I+ G T 
Sbjct: 114 LARIAAGGVYVSLAMAERLAQSLNERLDTL--------PDQRLSGREIDVFRRIAAGCTV 165

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  LG+S  TV+ Y   I+ K      +  + YA+R+ +
Sbjct: 166 CEIAHALGLSVKTVSTYKTRILEKMKLPHEAALVRYAIRHKL 207


>gi|229589258|ref|YP_002871377.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361124|emb|CAY47987.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 208

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 24/194 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  L     LD  +      +++                    L        
Sbjct: 35  GCDAIQMVRECLPDLIILDISIPKLDGLEVLCRFNAMNTPM--------KTLILTAQSPT 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y     D++ +   +  +           L                 
Sbjct: 87  LFATRCMRSGADGYVCKEGDLSELLSAIRAVLSGYNYFPSQALTT------------NGI 134

Query: 177 DVHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           D    ++ EL      RE+  L   ++G+T+ EIA  + +S  TV+ Y   +M+K   K+
Sbjct: 135 DGVETQELELFKTVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLQAKS 194

Query: 233 RSGAIAYAVRNNIV 246
               I  A RN +V
Sbjct: 195 LVELIEMAKRNALV 208


>gi|113971847|ref|YP_735640.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113886531|gb|ABI40583.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 201

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 54/181 (29%), Gaps = 27/181 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LDS +      ++ + +  ++             +F      L
Sbjct: 37  GRDFLAQCPLTQAGCVILDSRMPEITGQEVQQKLLETQSP--------LGVIFLTGHGDL 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  ++        +         +   +     +     +    ++ L   +        
Sbjct: 89  PMALSAFRKGACDFFQKPVSGKALVQAIEKAHKE----SQASFEQLYLQQKFA------- 137

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE + L  + +G T+ +I+  + +S  T+  + A IM+K      +  
Sbjct: 138 --------QLTEREQQVLAHVVQGMTNKQISEAMYLSLRTIEVHRAKIMKKLEVSNMAEL 189

Query: 237 I 237
           +
Sbjct: 190 V 190


>gi|309811175|ref|ZP_07704970.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308434861|gb|EFP58698.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 351

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 70/233 (30%), Gaps = 31/233 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     ++ L   S     +         T R+ A                
Sbjct: 141 VRVYLLDDHEIVRRGLAELLASSGRCEVVGESGSAEEATRRIPAA--------------- 185

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ R +   +++    +L          +      +       
Sbjct: 186 RPDVAILDGRLPDGTGMEVCRAVRSVDENIRCLIL--------TSYDDDEALLAAILAGA 237

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FEL 186
           + Y       A +   +  +     ++           A       +        +   L
Sbjct: 238 SGYVLKQVRGADLIETIERVAAGESLLDTAD-------ADVIRARLRGDGALESPELAAL 290

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T +E   L  I++G T+ +IA  L ++  TV NY+ S++ K   ++R+ A   
Sbjct: 291 TEQEKRVLDLITQGYTNRQIAGRLHLAEKTVKNYVTSLLAKLGLESRTQAAVL 343


>gi|261250785|ref|ZP_05943359.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891]
 gi|260937658|gb|EEX93646.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I+ D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 114 VSLLLKGMDKIMNDEMWLSRKVAQDYIEHFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 174 SNVQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|21244897|ref|NP_644479.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626449|ref|ZP_06705049.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294667013|ref|ZP_06732241.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21110608|gb|AAM39015.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292599248|gb|EFF43385.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603230|gb|EFF46653.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L           +D  +     
Sbjct: 9   DHPLFREALRGAVQRVMPGVELFE-----ADNVDALYSLADAQPDADLLLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  + +        V+         V                 +   + D   I   
Sbjct: 64  FSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTIGRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +    R I  +                        +  +LT ++   L  +  G+ +
Sbjct: 116 LATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|29828913|ref|NP_823547.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|15824126|dbj|BAB69292.1| two-compnent system regulatory protein [Streptomyces avermitilis]
 gi|29606018|dbj|BAC70082.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 218

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 23/233 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R  + R   +       +++   + ++  +             GA+       +      
Sbjct: 5   RAGQLRIVLIDDHALLREVVCETLNVEPDMVVVGVA-----ASGAAGIAHCEIEQPGVVL 59

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +  +   +    +  +         +                          Y + 
Sbjct: 60  LDGNIPDESVTETAHAIRST-----SPNARILIVSMP---DDPALVRQLLDCGVRGYLNK 111

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +     +   +  +      I       +  ++        +      K   LT RE+E 
Sbjct: 112 SASRNDLVSSIRAVCADNIRI-------VLHISVEALTHIATTANCQDK---LTRREIEI 161

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           LT +S+  ++ +I+  L I+  TV  ++ +I  K   ++R  A+  AV   ++
Sbjct: 162 LTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGLI 214


>gi|158392733|dbj|BAF91143.1| DNA-binding response regulator LuxR family [Pseudomonas putida]
          Length = 214

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 65/237 (27%), Gaps = 29/237 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I+L  +       ++H          +           ++                 +L 
Sbjct: 3   ILLVDDHPMIRLGLAHFLGEGLNGLPVREAGSGEEALQQVQE---------------ELP 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      +  R +           L +   LF      L             
Sbjct: 48  GLVIMDFDLPGISGLETTRRLRQR--------LPQLRVLFFSEHTELGLVRQALDAGACG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S     A +   +  +      I +        LA               +   LT R
Sbjct: 100 FLSKAAAPAVVLEAVRRVLAGHAYIEQ---PLATQLACQPH---PGQGGGNARLQGLTQR 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E    +++G  +  IA  L IS  TV+NY+  +  K    + +  +  A+   ++
Sbjct: 154 EIEVFLMLAKGTPTRLIAQQLCISAKTVSNYLTLLKSKLQVSSHAELVHLAIEAGLL 210


>gi|119773662|ref|YP_926402.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766162|gb|ABL98732.1| two component transcriptional regulator, LuxR family [Shewanella
           amazonensis SB2B]
          Length = 223

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 72/232 (31%), Gaps = 28/232 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ + +  +     + ++    ++   A ++  +        + +             
Sbjct: 1   MSQIKVAIADDHPLFRAALTQAVLKNVNTAEVLEAENFQELIRVIES------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +  +  F  +  +          V+   +    P             
Sbjct: 48  -HPDIELVFLDLHMPGNEGFTGLTLLQN---HFPDIVVIMVSSDDQPDI-----IRKAIN 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   + ++ +I   +  +      +  +    +    A +            +  
Sbjct: 99  LGASAFIPKSANLNQIADAIGTVLDGEVWLPDNTDINVDQQTAAEHQRLAK------QLA 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT ++   L  I+ G+ + +IA  L I   TV  ++++I+ K     R+ A
Sbjct: 153 QLTPQQYTVLASIANGQLNKQIAYDLNIKETTVKKHVSAILLKLEVYNRTQA 204


>gi|166712253|ref|ZP_02243460.1| transcriptional regulator luxR/uhpA family protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 215

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 22/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +         +  ++  +  V       +     G +    +R  +      D  
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDVDVVGEAES-----GEAALPQIRQLMPDIVLCDLH 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++   +   +      ++    +   P                + Y     D 
Sbjct: 58  LPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGASGYVGKGGDA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R +       + L      +  +     +     L+ RE+E    +
Sbjct: 110 HELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LSPRELEVALLL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 161 TQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 208


>gi|311897240|dbj|BAJ29648.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 200

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 59/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    +  + E   G     +          LD  +     
Sbjct: 2   RVLLADDEHLIRGALAALLALEDDLTVVAEAASGPEALAMAAAHRPDVAVLDLQMPGLDG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            ++   +           L     +                     +   T   + +   
Sbjct: 62  IEVAAELRHR--------LPECRVMIVTGHGRPGYLKRALEVGVRGFLPKTVSASDLAGI 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   GR +  +   E                     D  LT RE + L   ++G   
Sbjct: 114 IRTVRAGGRYVDPELAAE----------------AISAGDSPLTPRETDVLELAADGSPV 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S  TV NY++S   K   + R  A+  A  +  +
Sbjct: 158 AEIAERAALSPGTVRNYLSSAAGKLGAENRHAAVRIAREHGWL 200


>gi|217979268|ref|YP_002363415.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217504644|gb|ACK52053.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 232

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L+R+   +   V       + + R++ +     +   +  L          + R    
Sbjct: 19  LQLSRDPAMKVLLVDDHIVVREGVRRLLSV-----FVESVELLEAGTTLEALSIYRSTRP 73

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +L++              +        V                 
Sbjct: 74  DIVILDLNLPGTGGLELLKR-----LLIEDPRARVLIFSMHTV---TLYVARALQSGARG 125

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y S           +  +   GR I R+   ++ L          +          L+ R
Sbjct: 126 YISKGASAEEFVEAIHQVMGGGRYIERELAADLAL----------NVFGSQDPGKSLSAR 175

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E++ +  +++GK+   IA  LG+S  T+ N   ++  K   +  S  I  AV  
Sbjct: 176 ELDIMRLLAKGKSLSAIADTLGVSYKTIANTCTAMKHKLLVQRTSDLIRLAVEM 229


>gi|149374681|ref|ZP_01892455.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
 gi|149361384|gb|EDM49834.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter algicola DG893]
          Length = 221

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 30/235 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +    +++   A+ + +D   +    + +                 
Sbjct: 4   TIIVADDHPLFRAALKQAVSQAVPDAKTVEVDSIKALQAAVES--------------HPD 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     F  +      +      V+   +E    +  ++           +
Sbjct: 50  ADLVLLDLNMPGAHGFSGL-VFMRGQYPGLPVVVVSGSEEMQVMRRSIDY-------GAS 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  I   +  +      +           A     M         K   LT 
Sbjct: 102 GFIPKSAPLPTITEAIQAVLEGDVWLPEGV-------ADKIERMHSDMTDFSEKLASLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++   L  ++EG  + +IA  L +S  T+  +I ++ RK   + R+ A+  A++ 
Sbjct: 155 QQFRVLGMLAEGLLNKQIAYDLDVSEATIKAHITAVFRKLGVRNRTQAV-IAIQQ 208


>gi|160898522|ref|YP_001564104.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160364106|gb|ABX35719.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 217

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 64/240 (26%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ I +  +       V     +   L  +       S      +               
Sbjct: 4   KLRIAVVDDHAVVLLGVKDFLEQDPNLQVVATFSTPSSLMQYARS--------------- 48

Query: 67  DLFQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
           +       D  +  D    D +R +    +      +   T +  P+  +   +      
Sbjct: 49  NPLDVVLTDYSMPGDDVYGDGLRYVDYLIRHFPDIKVLVLTTVSNPMIISALYD-----A 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                      + +I   L  +    R        +            +       +   
Sbjct: 104 GVAGVLLKEDPLTQIMAALQCVRLNARYYSPSFQADTP--------RQERSVFLAERANS 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L   + G++  EIA  L  S  TV+    S MRK    +     A+   +++
Sbjct: 156 LSPREFEVLRHFANGESITEIAARLRRSVKTVSLQKNSAMRKLNVDSNQDLAAFCAEHHL 215


>gi|109898189|ref|YP_661444.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700470|gb|ABG40390.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 218

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 8/164 (4%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D I+       +     L +                       + +   +     + + +
Sbjct: 50  DLILLDLNMPGMTGLNGLLDVRNECPTTPVVIVSAET---EKQKILQTLSYGAVGFIAKS 106

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                I   +  +F     +  + +      +   AN     ++   K   LT RE+  L
Sbjct: 107 SSKQVIGEAIQSVFAGNVYLPPNIMR-----SQAVANQTNECEISPEKISLLTRRELIVL 161

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +++G+ + +IA  L IS  T+ ++++SI++K     R   + 
Sbjct: 162 KHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATNRVKVVV 205


>gi|297531030|ref|YP_003672305.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254282|gb|ADI27728.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 200

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 43/242 (17%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++NI++  +       +  L  R   L  +  +         +               
Sbjct: 1   MVKINILIIGDHGLVMDGIHQLLEREPDLEVVGAVFSPAELEKEIAHF------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D+    +      +           +       +      +         
Sbjct: 49  ---QPDIIVIDATSQRENYLIWTK--------NISSRFPASKVVMLSGDASAEYVQAVHE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + S       +   +   +   +    D  +                        
Sbjct: 98  AGAYAFVSKCDSAETLIHAIRESYRGVKSFPTDLAFH--------------------DGS 137

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E+  L  I+  KT+ EI   L IS+ TV ++++SI+RK   K+R+GA+  A R  
Sbjct: 138 PLTDMELAVLDLIARDKTNREIGEQLNISKRTVEHHVSSILRKLHVKSRAGAVGKAFRLG 197

Query: 245 IV 246
           ++
Sbjct: 198 LL 199


>gi|292491684|ref|YP_003527123.1| LuxR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580279|gb|ADE14736.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4]
          Length = 229

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 29/221 (13%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
            F+ H    +    R +             A +                    LD  V  
Sbjct: 30  VFIVHHDKEAQHALRRMITSTAWEIKTYFSAESFLDEFDPA------RPGCLLLDVHVPK 83

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
                L + +   + + +  +L   +    P      E +    G    + +  +  + +
Sbjct: 84  MGGLSLQKQL--RDMNSFLPILFISSHGTVP------EAVEAIHGGAADFFTKPWQKSVL 135

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L     K                 Y     K  +    +   LT RE E +  + +G
Sbjct: 136 LKRLWACMEKD---------------QYARENKKKQEEIIARMARLTPREWEVMELVVKG 180

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + +  IA  LGIS  TV N+ A +M+K   KT++  I  A+
Sbjct: 181 RLNKVIAFELGISLKTVENHRAQVMKKLQVKTQADLIRLAL 221


>gi|156741214|ref|YP_001431343.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM
           13941]
 gi|156232542|gb|ABU57325.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii
           DSM 13941]
          Length = 204

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 12/214 (5%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           + R++ +  T +    + AL               L     + + +      D       
Sbjct: 1   MIRVLIVAPTPALRAGLRALLTAANVEIID-AIGSLVDLSGIAADIDVILAADESVLADA 59

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +                P      + +           +     A +   L  +     
Sbjct: 60  DQVLAEEPRYAALLLSDDP---RQADVLRGLPLTAWGILTHDVGAAELAAALHAVAQGLI 116

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++  +    +           +   V       LT RE + L  +S+G ++ +IA  L I
Sbjct: 117 VLAPNLAARLL--------QARQSPVEEPTGEPLTARERDVLELVSQGLSNKQIAQKLHI 168

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S +TV  +++S+  K    +R+ A+    R  I+
Sbjct: 169 SEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202


>gi|304310958|ref|YP_003810556.1| Nitrate/nitrite two-component response regulator [gamma
           proteobacterium HdN1]
 gi|301796691|emb|CBL44903.1| Nitrate/nitrite two-component response regulator [gamma
           proteobacterium HdN1]
          Length = 213

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 68/221 (30%), Gaps = 16/221 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     +   +      LD  +      
Sbjct: 7   VLIVDDHPLMRKGLHQLIDMEEGLECIGEAASGDEAVRMAVANEPDVVLLDLNMPGMSGV 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D ++ +  +E             +   V     + IT      + Y     D   +   +
Sbjct: 67  DTLKALRTAEVF--------SRIIVFTVSDDQDDVITALKAGADGYLLKDTDPDDVMAAI 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I       +  + A   +  +    +      LT RE + L  I+ G ++ 
Sbjct: 119 HQVVAGQLTISD----RLSQVLASAISKRREAGPNID---TLTEREKQILKAIAAGYSNK 171

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I   L I+  TV  ++  +++K   ++R  A  +AV   +
Sbjct: 172 IIGRKLDIAEGTVKVHVKKVLKKLGFRSRVEAAIWAVEQGM 212


>gi|227327331|ref|ZP_03831355.1| quorum-sensing transcriptional regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 224

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 28/206 (13%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    +  G   +  +  +   +     ++ S++P + V     +       V+  
Sbjct: 15  IKSYLGRKLKQYGDLKYAYMIMNK--KNPSQVVIISNYPQEWVNTYKENNYQHIDPVILT 72

Query: 105 PTELFCPVFHTL------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 P                   N++    + N Y  +  D       L ++F +  
Sbjct: 73  AINKVSPFSWEDNIVINSKLKFSKIFNLSKEYDIVNGYTFVLHDNNNNLAALSIMFEEHA 132

Query: 153 IILRDRLWE-----IGLLAAYQANMF---------KSYDVHWGKDFELTGREVECLTWIS 198
               + + E     + +L                        G     + RE E L W S
Sbjct: 133 PTDMENIVEENKDKLQMLLIAVHEKITTLYKEMTQSPQSRKQGDKEIFSQRENEILYWAS 192

Query: 199 EGKTSDEIAVILGISRNTVNNYIASI 224
            GKT  EIA+IL I  +TV  +I ++
Sbjct: 193 MGKTYPEIALILDIKISTVKFHIGNV 218


>gi|156976379|ref|YP_001447285.1| protein-glutamate methylesterase [Vibrio harveyi ATCC BAA-1116]
 gi|156527973|gb|ABU73058.1| hypothetical protein VIBHAR_05152 [Vibrio harveyi ATCC BAA-1116]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 172 MFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             + +     K     LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K  
Sbjct: 141 HLRRHSRPLNKTVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKID 200

Query: 230 TKTRSGAIAYAVRN 243
            K R  A+ +A  N
Sbjct: 201 VKNRVQALIWAKEN 214


>gi|153831737|ref|ZP_01984404.1| probable csgAB operon transcriptional regulatory protein [Vibrio
           harveyi HY01]
 gi|148872247|gb|EDL71064.1| probable csgAB operon transcriptional regulatory protein [Vibrio
           harveyi HY01]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 172 MFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             + +     K     LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K  
Sbjct: 141 HLRRHSRPLNKTVPAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKID 200

Query: 230 TKTRSGAIAYAVRN 243
            K R  A+ +A  N
Sbjct: 201 VKNRVQALIWAKEN 214


>gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 74/223 (33%), Gaps = 22/223 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPF 84
           P        +  +D        +  + +       L+   D       ++D ++   +  
Sbjct: 2   PATRTRPVTIALVDDYDVVLKGLAHMFDDY-RDRVLVAEIDANAALSDEIDIVLYDSFAQ 60

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG---MDNRYCSLTFDVARIR 141
                   S+  +   +++ P      V+    +            + Y S       + 
Sbjct: 61  P------ESDHHEIAELVRNPRARRVVVYTWNFQPELVADARMQGVHGYLSKALPARELV 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +     +     +                     GK   +T RE E L  I++GK
Sbjct: 115 EALERIHSGEELFNEAPIRAAS----------APSLDWPGKREGITDRESEILALITQGK 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++ E+A +  +S NTV +YI SI RK   ++R+ A+ + V + 
Sbjct: 165 SNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHG 207


>gi|37913119|gb|AAR05381.1| probable two-component response regulator [Aeromonas hydrophila]
          Length = 207

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 70/238 (29%), Gaps = 33/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       V+ L  ++     +  +D                G     L R + 
Sbjct: 3   TILIVDDHPAIRMAVNILLKQAGHHI-LAEVDN---------------GVDAISLARKNK 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   LD  +      ++++             ++          H +           +
Sbjct: 47  PEMVVLDIGIPRLDGIEVIKR-----LKDMDPAIKVVILSGQATHHIMVRC---LQAGAD 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ +   L  +        RD +                          L+ 
Sbjct: 99  GFISKLDDLSLLNAALDKIKKGQLYFPRDII---------AGARHAHEVDRADLLSTLSD 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I +G T+  IA  + +S  TV+ Y   +M+K         I+ A R  ++
Sbjct: 150 REMSVLLLICQGHTNKHIAENMLLSEKTVSTYKTRLMQKLNVTNMVDLISLARRQELL 207


>gi|8515861|gb|AAF76213.1|AF272053_3 HrpY [Pantoea agglomerans pv. gypsophilae]
          Length = 213

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +  + L  +            +                 +
Sbjct: 5   IRLMVVDDHVIMREGLKQIFSLDERLVVVSEAGNGTQVMEGLR---------------IE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DL+  +             +   L   ++              
Sbjct: 50  RVDLLLLDMCMPGLSGEDLISHIHSQ--------YPQLPILILTMYSEPQIARRALKCGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     D   +   +  +    R I      +I           +      G    LT
Sbjct: 102 LGYIIKDNDPETLLAAIHRVARGQRYIDHILAEQIVF--------DQQAQTEEGLHEHLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+  + IA  L IS  TV+ + + +M K   KT +  + YA+ ++++
Sbjct: 154 AREMQIMLKLARGEGVNSIAESLAISNKTVSTHKSRLMEKMMFKTNADIVKYAISHHLI 212


>gi|330816986|ref|YP_004360691.1| two component LuxR family transcriptional regulator [Burkholderia
           gladioli BSR3]
 gi|327369379|gb|AEA60735.1| two component LuxR family transcriptional regulator [Burkholderia
           gladioli BSR3]
          Length = 213

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 17/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +            + C +  T       E   G      V    F    LD      
Sbjct: 1   MKKVLLVERHAITRAGIRCILETTQDFLVGCEFANGDEMLSEVDGKTFDVAILDFSSLGQ 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               L+R +A+         +     L         +  +  +     + +     A + 
Sbjct: 61  RGLALIRQLAVH--------VPTLRILVISANSDPVQAKSVFSAGAGGFLAKRNSGAEML 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + L+    R +  D    + L+     +  +           L+ +E + L  ++ G+
Sbjct: 113 QAVRLVLSGRRYLSPDVAEHMVLMIDLPFDAPRHAR--------LSTQETKVLRHLACGE 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              EIA  +G+S  T++ Y A +  K A ++ +  + YA+ + +V
Sbjct: 165 PVAEIARDMGLSNKTISTYKARLFDKLAVRSDAALVRYALAHRLV 209


>gi|239994578|ref|ZP_04715102.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii ATCC 27126]
          Length = 225

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  N    +   +  +  G+  +    +   R+ +     + A   +  K      
Sbjct: 96  AALQHGINGIFHIEDSLELLVRGVQQVQAGNKWFSREIMSR--YIDANLVSKAKPVAALQ 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT RE+     I++G  + EIA  L IS NTV  ++ SI RKT  + R   I +
Sbjct: 154 SSHTVLTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELIKW 212


>gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
 gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM
           7271]
          Length = 234

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 35/64 (54%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           DF LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A R
Sbjct: 171 DFVLTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARR 230

Query: 243 NNIV 246
             I+
Sbjct: 231 KGIL 234


>gi|206562484|ref|YP_002233247.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038524|emb|CAR54482.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 215

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 21/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L  ++ +                 G+    L    +     LD  
Sbjct: 2   IRVILADDHAVMRDGLRHILEMAGGFEIVGEA-----SDGSGTLALAERTVADVLLLDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + +    +L+R +                 L   +                 Y +     
Sbjct: 57  MPAPTGIELIRLVKRQA--------PSLRTLVLTMHAETQYAARAFKAGATGYLTKDSAT 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +   G  +       +                       L+ RE++ +  I
Sbjct: 109 AELVEAVGKVAAGGIYVSPSAAESLA--------RTLRAPAQVLPHERLSARELDVMRRI 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G+T  +IA  L +S  TV+ Y   I+ K A    +  I YAVR+++
Sbjct: 161 VAGQTVTQIAFELALSAKTVSTYKTRILDKMALPHEAALIRYAVRHDL 208


>gi|70731633|ref|YP_261374.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345932|gb|AAY93538.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 209

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 60/218 (27%), Gaps = 15/218 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D     + +   +             GA    LVR  L     LD  + +   F 
Sbjct: 4   IIIVDDHPLIRLAIRSVLDPHHHNIVAEADNGADAVQLVRKHLPDLLILDLGIPNLDGFS 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +  +              L      +    +         +   T ++  +   + 
Sbjct: 64  VIAHIKSAGL--------HVKTLVLTSSDSKNFALRCLQAGAAGFLCKTENLHELANAVK 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +         D +  +                       LT RE+  L  ++ G  + +
Sbjct: 116 AILSGYSYFPEDTINILQQNTNAANQESVLISR-------LTDREITVLKLLATGLNNQQ 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  L IS  TV+ Y   ++++            A RN
Sbjct: 169 IADALLISHKTVSTYKVRLLKRFNVSNLVALAELAKRN 206


>gi|329948015|ref|ZP_08294916.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523154|gb|EGF50255.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 216

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 4/217 (1%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D     + L   +     +  + E   G     ++          D ++       + 
Sbjct: 3   VDDQRYACLGLALMIRKAPDLRVVAEAGDGHEALEVLEQLNRSSGLPDVVLMDVRMPGMD 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
              A     + +  ++         +              + +       A++   +  +
Sbjct: 63  GISATRAMARRFPTVKVL---VLTTYDEDDYAFGALEVGASGFLLKDARAAQLAQAVRAV 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++      E+      +A      +    +   LT RE++    I+EG +++EIA
Sbjct: 120 AQGDAVLTPRVTKELIARGVPRALPGAQREGLRERFGALTPRELDVARLIAEGMSNEEIA 179

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +   +V   ++ I+ K   + R        ++N
Sbjct: 180 ERLVLQPASVRRNVSRILAKLHLRDRVQIAVAWYKSN 216


>gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 254

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
              G  N    L  ++      + LL   G       L              +       
Sbjct: 112 VDEGSVNGVLPLNLNLDLCLTAIDLLMKGGEHFPAALLRRSAPRGLAGGLAAQKQASSED 171

Query: 182 KDFE---------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            D E         LT RE + L  I  G  +  IA  LG+S NTV  ++ +I +K   + 
Sbjct: 172 IDLERKIDFGQDLLTMRETQVLDLICVGMQNKIIADRLGLSENTVKVHVRNIYKKMNVRN 231

Query: 233 RSGAIAYAVRN 243
           R+ A A   R+
Sbjct: 232 RTEAAARYFRS 242


>gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 220

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 14/211 (6%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           R+  +D      + +  +    G     + +         +D  +   +         + 
Sbjct: 9   RIALVDDYDVVVIGLAHMLAPFGDRITVVELDVQQPVSVDVDIALYDTFAQPESDRHDIH 68

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                         +                   + Y + +    ++   L  +     +
Sbjct: 69  ALLDNA---HAARVVIYTWSFDPALIAAARRRGIHGYLAKSLPARQLVEALEAVHGGEVV 125

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +              +           G+   LT RE E L  I++G+ + EIA +  +S
Sbjct: 126 VSVPP----------RRVHSAPGLDWPGRAEGLTDREAEILALITQGRGNAEIASMTYLS 175

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            NT+ +YI S+ RK    +R+ A+ + V + 
Sbjct: 176 PNTIKSYIRSVYRKIGVSSRTQAVLWGVHHG 206


>gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 514

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 20/252 (7%)

Query: 1   MNFEIQQVNIVLNREDEQ------RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE 54
           M+ E ++   +  R+ E+      R + V+     +D    +   D  V+         +
Sbjct: 254 MDLEPRKQAELALRQSEECFAKAFRMAPVATAIVTADRFELLDVNDAFVAMAGHARD--D 311

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
            +G S   +  W    E+     + S    D     A  +       ++       PV  
Sbjct: 312 LLGKSADEIGLW---AERGARQQIDSALARDGNVRNADVQIRTGDGDVRDCVVSAEPV-- 366

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                     G D    +L     R R  + L++     +     +   L+        +
Sbjct: 367 -------AIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRE 419

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +      +  +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R 
Sbjct: 420 NAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRG 479

Query: 235 GAIAYAVRNNIV 246
            AI +A    IV
Sbjct: 480 EAIVWARERGIV 491


>gi|288921805|ref|ZP_06416022.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288346829|gb|EFC81141.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 694

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 65/239 (27%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L +  D L  +  +         +  L               
Sbjct: 495 IKVLLADDQHLVRGALAALISLEDDLEVVGQVGRGDEVVSAVTRL--------------- 539

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++       +    A           Q         F              
Sbjct: 540 -----HPDVVLMDVEMPGIDGLAAARAVRATAPDTQVLVVTT---FGRTGYLRRAMEAGA 591

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    R++            A                  LT
Sbjct: 592 LGFVVKDAPAEALAEAIRRVARGERVVDPTLAAATLAGGA----------------SPLT 635

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GRE + L    +G T  +IA  L +S  TV NY+++++ KT T+ R  A+  A  +  +
Sbjct: 636 GRERDVLVAARDGATVADIARRLFLSEGTVRNYLSAVIAKTGTRNRMEALRVAEDSGWL 694


>gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 74

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|317403950|gb|EFV84417.1| positive response regulator for colanic capsule biosynthesis
           protein [Achromobacter xylosoxidans C54]
          Length = 232

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 75/242 (30%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q++ IV+  +       ++ L  +      +  L    +    M               
Sbjct: 17  MQRLRIVIADDHPLVLMGMTDLLNKDLSFDVVATLASPTALVEHMKR------------- 63

Query: 65  RWDLFQEQKLDSIVSSD-WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
             DL Q    D  +  D    D +R +    +      +   T +  P+  +   +    
Sbjct: 64  --DLPQVVITDYSMPGDEIYGDGIRLVKYLIRHFPGARIVVLTMVSNPMIISALYD---- 117

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                       D+  I   L  L    +        E  L A ++            + 
Sbjct: 118 -AGVEAVVFKRDDLGEIVTALHALQLGRKYYPPGFQREGSLAARHKF--------IGERI 168

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ +E E L     G++  ++A  L  S  TV+    S MRK   +T    +A+ V +
Sbjct: 169 NSLSPKEFEVLRHFIRGESMMQVADSLKRSVKTVSGQKISAMRKLNVQTDQELVAFCVES 228

Query: 244 NI 245
            +
Sbjct: 229 GM 230


>gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
 gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342]
          Length = 921

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 84/250 (33%), Gaps = 17/250 (6%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +QV + L R +    +    L  + + +A    +D        + AL+  +     L
Sbjct: 682 MLAEQVRVRLQRGN---VTGAEQLQRQLEQMAASFRMDAEHPCQRAI-ALSASLSHCRLL 737

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTL 116
           L R    Q   L + + SD      R  A   +  +   L            F PV    
Sbjct: 738 LARGQAPQACILLADMVSDQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLA 797

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                    ++         +A +         +G +        +       A+     
Sbjct: 798 EHQHLKGLFLEAGDTLQPL-LAGMNESSSACKEEGGVHEPWADKRV------PADGTPFN 850

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A
Sbjct: 851 SGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQA 910

Query: 237 IAYAVRNNIV 246
           ++ A+   ++
Sbjct: 911 MSRALEMKLL 920


>gi|325919524|ref|ZP_08181543.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325923815|ref|ZP_08185429.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325545709|gb|EGD16949.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325550000|gb|EGD20835.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 200

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +  L    D +  +       S    +  L               
Sbjct: 2   IRVLLAEDQALLRGALVALLGLEDDIEVVGSAGDGESAWRELQRL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L + +                 +    F              
Sbjct: 47  QPDVLITDIEMPGLTGLELAQRIQRQALP--------VRVMIVTTFARPGFLRRALDAGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        ++   L  +   GR+I      +  + A                   L+
Sbjct: 99  AAYLLKDAPAEQLVSALRQVQRGGRVIDPQLAVDAWVEA-----------------DPLS 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L    EG+++ EIA  L +S  TV N+++  + K     R  A   A +   +
Sbjct: 142 ERERTVLRLAGEGRSASEIAQQLQLSHGTVRNHLSECIGKLGVANRIEAYRLARQKGWL 200


>gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 240

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 21/225 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  LD   +    +  L         +  ++       L + ++S+      +     E 
Sbjct: 22  ITELDGQTAVENALEWLRRECDCERAMFYQFKGP---LLLTFITSNVDDIWGKAYRHHEL 78

Query: 96  DKYYNVLQRPTELFCPVFH--------------TLPENITPPAGMDNRYCSLTFDVARIR 141
                V++        +                   E       +   Y S         
Sbjct: 79  ITQDPVIRYYRNHLGFMNWQDAFRLYPLSACYDEAVEASELLPAISYGYTS-HCRGTESV 137

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L    + I  ++ + +  L     ++ +           LT RE+E L W  +GK
Sbjct: 138 TSVCTLAEVEKPINAEQKYLVSSLMPVMHSVARGLKFC---SRGLTHRELETLQWARDGK 194

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + EI+VI  IS  TV  ++ +I  K     R+ A+  A+   ++
Sbjct: 195 NAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCRGLI 239


>gi|325917495|ref|ZP_08179701.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536289|gb|EGD08079.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 18/220 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY--VGASHFLLVRWDLFQEQKLDSIVSS 80
           ++ L    D       L   V   M    L E   V A + L           +D  +  
Sbjct: 1   MTTLLIADDHPLFREALRGAVQRVMPGVQLFEADNVDALYTLADAQPDADLLLMDLNMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              F  +  + +        V+         V                 +   + D   I
Sbjct: 61  AQGFSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  +    R I  +                        +  +LT ++   L  +  G
Sbjct: 113 GRALATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 165 RLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5]
          Length = 160

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 4/138 (2%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               +  L +       +   Y +     A     +  L    R I  ++ + +  L   
Sbjct: 26  VSAFYDALVDTCELLPAISYGYTN-HCRGADSVTSVCTLGEVERPISAEQKYLMSSLMPV 84

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             ++ +           LT RE+E L W  +GKT+ EI++I  +S +TV  ++ +I  K 
Sbjct: 85  LHSVARGLKFC---SRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKL 141

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+  A+   ++
Sbjct: 142 GVANRAQAVGEALCRGLI 159


>gi|254488693|ref|ZP_05101898.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
 gi|214045562|gb|EEB86200.1| DNA-binding response regulator, LuxR family [Roseobacter sp.
           GAI101]
          Length = 233

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 23/223 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P   D L   + L     ++  + A  + + A+  LL      +   LD  +   
Sbjct: 23  VIDDHPLFCDALE--LTLRSVAQFSEVLTA--DCLEAALELLEGAMAPELILLDLNLPDV 78

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D    +          V+   +                     + +          +
Sbjct: 79  SGLDGFLRL--KRHAPGSPVIIVSSMT------DNAIINAAINAGASGFVPKHSQRLVFK 130

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY-DVHWGKDFELTGREVECLTWISEG 200
             L  +   G              + Y         D +  +   LT ++   L  I EG
Sbjct: 131 DALARVKAGGIFTP----------SGYVDGREPDGSDANLARLASLTNQQYRILQLICEG 180

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           K + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A   
Sbjct: 181 KLNKQIAFELSIAETTVKAHVTAIMRKLGVQSRTQAVLVAHEA 223


>gi|166710233|ref|ZP_02241440.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 222

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 64/220 (29%), Gaps = 18/220 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY--VGASHFLLVRWDLFQEQKLDSIVSS 80
           ++ L    D       L   V   M    L E   V A + L           +D  +  
Sbjct: 1   MTTLLIADDHPLFREALRGAVQRVMPGVQLFEADNVDALYTLADAQPDADLLLMDLNMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              F  +  + +        V+         V                 +   + D   I
Sbjct: 61  AQGFSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  +    R I  +                        +  +LT ++   L  +  G
Sbjct: 113 GRALATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 165 RLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|323357983|ref|YP_004224379.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323274354|dbj|BAJ74499.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 201

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 64/229 (27%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ L+  +    ++       G       R        LD  
Sbjct: 2   IRLLIADDQALVRGALAALLGLEHDIEVVAQVGR-----GDEVVEAARASEADVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +           +     L    F              + +       
Sbjct: 57  MPGIDGIAAASLLRSE--------VPGCRALIVTTFGRPGYLARAMQAGASGFVVKDTPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    R++      E                     D  LT RE + L+  
Sbjct: 109 AELADAVRRVSLGLRVVDPALAAE----------------SLAQGDSPLTERETDVLSAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G +  +IA  + +S  TV N+++S + KT  + R+ A+  AV    +
Sbjct: 153 RDGGSIADIARTVHLSEGTVKNHLSSAIGKTGGRNRADAVRVAVERGWL 201


>gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 203

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + LA ++ L+  +    +        G       R        LD  
Sbjct: 4   IRLLLAEDQSMVREALAALLGLEPDIEVVAQAAR-----GDEVLAAAREHAVDVALLDIE 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +     D    V+          F              + +       
Sbjct: 59  MPGMNGIEAAAELRRELPDIKIVVV--------TTFGRPGYLRRAMESGADAFLVKDAPS 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A++   +  +    R+I                               LT RE E L   
Sbjct: 111 AQLADAVRRVLGGERVIDPALAAA----------------ALAEGANPLTDREREVLRAA 154

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T+ EIA  + +S  TV NY+++ ++KTA + R+ A+  A     +
Sbjct: 155 ADGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVAGEKGWL 203


>gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 172

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                F     R   ++L  + +   +  + ++ L A    +      +       LT R
Sbjct: 56  LFIPLFTPEGRR-YCLVLSGERQEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGRLTQR 114

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E + W SEGKTS EIA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 115 EQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 171


>gi|187476714|ref|YP_784737.1| two-component system response regulator [Bordetella avium 197N]
 gi|115421300|emb|CAJ47805.1| putative two-component system response regulator [Bordetella avium
           197N]
          Length = 207

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 61/221 (27%), Gaps = 19/221 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ L    D       L   +     +  + E   A   L +      E+  D ++    
Sbjct: 3   LTRLLLIDDHALVRDGLKLHLQSIPSLTVMGETESARATLDLLARGQPEEWPDLVLLDLS 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D           + Y  +             +       A     Y   T   A +  
Sbjct: 63  LQDADGLELAKILHERYPRIAVLILSM---HDNVESMRQAIAAGVRGYVLKTEATADLLT 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +             ++                       LT RE + L  I  G T
Sbjct: 120 AIKRVAAGKTGFSPQVSLKLT----------------QNHAPLLTQRERDILQGIGMGMT 163

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + +IA  L +S  TV  Y  ++ RK     R+  I YA+ +
Sbjct: 164 NRQIAQTLDLSVRTVETYRHTLKRKLNIGGRADLIKYAIEH 204


>gi|91228457|ref|ZP_01262381.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269966819|ref|ZP_06180892.1| Transcriptional regulator [Vibrio alginolyticus 40B]
 gi|91187992|gb|EAS74300.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269828486|gb|EEZ82747.1| Transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 209

 Score = 93.4 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 48/171 (28%), Gaps = 19/171 (11%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +           L                     +    
Sbjct: 52  PDLVLLDLKMPGANGMSGLIHLRAEH-----PDLPIVVVS---ASEEPAIVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               + +    K   LT 
Sbjct: 104 GFIPKSSDMRELVNALNQVLNGDPYFPEGLITN-----------NAACNDLAEKIAALTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIM 203


>gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 511

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 14/241 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R      +    ++L  +   +     T  +       G     L  +          
Sbjct: 273 AHRLRLYEAVLQFDEIL--LQSKNLEEIITSTVEKTCRIGGFRRSALFWYTPLTRSVYGV 330

Query: 77  IVSSDWPFDLVRCMAL--SEKDKYYNVLQRPT-ELFCPVFHTLPENITPPAGMDNRYCSL 133
               + P + ++C+            V ++     F  +   LP++      + +     
Sbjct: 331 HAF-NIPRENIQCIREPVENLSGIQEVFEKMKPVHFENIHRRLPDHYVESFHLSSLLVCP 389

Query: 134 TFDVARIRIGLMLL--------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
              V   ++ ++LL          +G +   D +      A        +  V       
Sbjct: 390 IPVVGERQVAVLLLDQDGTPFQADEGTLFALDTMMSRAAKAMSARLAEPATKVGIPSSGV 449

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L +I++G  + EI+  L +S  TV+ Y+ +I+R+     RS A+A A+R NI
Sbjct: 450 LTPREQQILQFIADGLDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMRQNI 509

Query: 246 V 246
           +
Sbjct: 510 I 510


>gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 514

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 20/252 (7%)

Query: 1   MNFEIQQVNIVLNREDEQ------RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE 54
           M+ E ++   +  R+ E+      R + V+     +D    +   D  V+         +
Sbjct: 254 MDLEPRKQAELALRQSEECFAKAFRMAPVATAIVTADRFELLDVNDAFVAMAGHARD--D 311

Query: 55  YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH 114
            +G S   +  W    E+     + S    D     A  +       ++       PV  
Sbjct: 312 LLGKSADEIGLW---AERGARQQIDSALARDGNVRNADVQIRTGDGDVRDCVVSAEPV-- 366

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                     G D    +L     R R  + L++     +     +   L+        +
Sbjct: 367 -------AIHGQDCLLIALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRE 419

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           +      +  +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R 
Sbjct: 420 NAPDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRG 479

Query: 235 GAIAYAVRNNIV 246
            AI +A    IV
Sbjct: 480 EAIVWARERGIV 491


>gi|307323546|ref|ZP_07602756.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306891035|gb|EFN22011.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 217

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 59/232 (25%), Gaps = 24/232 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D    + +  +   +D +  +                           V   
Sbjct: 2   IRVLLADDDPLVRTGLKMMLRGADGIEVVAEAADGAEAAAA---------------VGEH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +            + P  +    F      +       
Sbjct: 47  EPDVILMDIRMPVMDGLAATRALTRHG-------TKAPQVIVLTTFDEHRLVLEAMRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +       I   +         +         L+    A      +    +   LT
Sbjct: 100 AGFLAKHTAPEDIVAAVRRAARGEPALSPSAAR--ALIEHAAAGPDDRAEHARQRLALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E    ++EG ++ +I   L +S  TV  +++S + K     R      
Sbjct: 158 EREREVAEAVAEGLSNTDIGTRLHLSLGTVKAHLSSALAKLDLDNRVQLALL 209


>gi|256829663|ref|YP_003158391.1| two component LuxR family transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578839|gb|ACU89975.1| two component transcriptional regulator, LuxR family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 219

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 27/232 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +++ N +L  +D      +  +    D       +                         
Sbjct: 1   MEKSNFLLVEDDHLLRMGLKSMIDMHDGYTCGSDVATGREALHSFRR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD  +   +  ++++ +   +        ++   +                
Sbjct: 48  --NPADIVLLDLQLPDMFGTEVLKKLRKID--------KQVKVVVLTAHENGDFLYETLE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y   + +   + + +         I       I  +  Y     +   +   ++ 
Sbjct: 98  YGANAYVLKSENPEELFMAIKCALNDDLFISPKLTKNI--IKDYIFTTRQRKGLSSLQN- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            LT RE++ +  I +GK S EIA IL IS  TV+ + ++I++K    T +  
Sbjct: 155 -LTPREIDVVKLIFKGKKSREIAEILAISVKTVDKHRSNILQKIGIHTFNEL 205


>gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 202

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 63/236 (26%), Gaps = 34/236 (14%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +    T  V  L      +  +                     A+   LV      
Sbjct: 1   MVVDDHPVVTDGVRLLLRDDPAIRVVGSAADA---------------ATAVRLVGRAQPH 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      ++V  +                 L    +              +  
Sbjct: 46  VVLLDLRLPDAMASEIVAPLRE--------AAPAARILVFTAYRDHAALQATLDAGVDGC 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +        I                             D  LT RE
Sbjct: 98  LLKDAGATDLVSAVHQAAHGIPIFDPR-----------VGERAAPRMRSRLHDTGLTQRE 146

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + L   + G+T+ EIA  LG++R+TV  Y+ + MRK   + R   IA A ++ ++
Sbjct: 147 YDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQSGLL 202


>gi|288961498|ref|YP_003451837.1| transcriptional regulatory protein [Azospirillum sp. B510]
 gi|288913806|dbj|BAI75293.1| transcriptional regulatory protein [Azospirillum sp. B510]
          Length = 222

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 17/217 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLV---------RWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  L E  G                         +D  +      DL   
Sbjct: 10  VDDDDAIRDSVQVLLECAGFRAEGYSTPLAFLDSDAPSRPGCLLVDVRMPQMSGLDLQER 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +                 +       +P  +         +    F+   +   +     
Sbjct: 70  LVRDGH--------ALPVVVMTGHGDVPLAVRAMKAGAVDFVEKPFEEEALLAAVRSALA 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +             + A   +    +      +   LT RE++ L W+  G+++  IA  
Sbjct: 122 RVAAGGAPASPSPPVAAEAPSPPPSAPPEVLARLSALTPRELDVLRWLVAGRSNKVIAFE 181

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  + A +M K    +    +  A+   +V
Sbjct: 182 LSISPRTVEIHRARVMEKMRADSLPTLVRMAIAAGVV 218


>gi|331700269|ref|YP_004336508.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954958|gb|AEA28655.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 201

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 71/222 (31%), Gaps = 25/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +     +  + E   G     ++R        LD  +      
Sbjct: 4   LVLADDEALTRGAVGALLGLEGDLRIVAEASTGDEAVEVIRVHAPDVAVLDVEMPGRDGA 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ + +A ++             +               A     + + +   + +   +
Sbjct: 64  EVAQWVAENQPGTRC--------IVLTRHARPGVLRRALAAGAAGFVTKSAPASVLADVV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   GR +  D                        +D  LT RE+E L  + +  T++
Sbjct: 116 RRVHGGGRYVDPDLA----------------MTALTSEDCPLTDRELEVLRNVDDSGTAN 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  + +S  TV NY++S M+K    +RS A   A  +  +
Sbjct: 160 DIARRVHLSPGTVRNYLSSAMQKLGAGSRSEAARLARDHGWL 201


>gi|307300268|ref|ZP_07580048.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
 gi|307321145|ref|ZP_07600549.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306893220|gb|EFN24002.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306904434|gb|EFN35018.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           BL225C]
          Length = 262

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFK 174
              GM +    L   +      + LL   G       L  +         LA       +
Sbjct: 114 VEEGMIHGVLPLNLHLDVCLTAIDLLMKGGEHFPAALLRRLAPKNPGERDLATRNETASE 173

Query: 175 SYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + D    K F    LT RE++ L  I  G  +  IA  LG+S NTV  ++ +I +K   +
Sbjct: 174 NVDPERRKGFGQVVLTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVR 233

Query: 232 TRSGAIAYAVRN 243
            R+ A +   RN
Sbjct: 234 NRTEAASRYFRN 245


>gi|225175373|ref|ZP_03729368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169125|gb|EEG77924.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 378

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE+E L  I+ G ++ EI+  L +S  TV  + ++I  K   K R+ AIA A + N
Sbjct: 315 ELSTRELEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGVKGRTQAIAMARKLN 374

Query: 245 IV 246
           ++
Sbjct: 375 ML 376


>gi|33592926|ref|NP_880570.1| virulence factors transcription regulator [Bordetella pertussis
           Tohama I]
 gi|61219948|sp|P0A4H2|BVGA_BORPE RecName: Full=Virulence factors putative positive transcription
           regulator BvgA
 gi|61219950|sp|P0A4H3|BVGA_BORBR RecName: Full=Virulence factors putative positive transcription
           regulator BvgA
 gi|61219953|sp|P0A4H4|BVGA_BORPA RecName: Full=Virulence factors putative positive transcription
           regulator BvgA
 gi|39353|emb|CAA41251.1| bvgA product, put. positive regulator [Bordetella bronchiseptica]
 gi|39728|emb|CAA37123.1| bvgA product, put. positive regulator [Bordetella parapertussis]
 gi|144039|gb|AAA22969.1| BvgA positive transcription regulator (put.); putative [Bordetella
           pertussis]
 gi|33572574|emb|CAE42161.1| virulence factors transcription regulator [Bordetella pertussis
           Tohama I]
 gi|332382338|gb|AEE67185.1| virulence factors transcription regulator [Bordetella pertussis CS]
          Length = 209

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 26/220 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSSDWPFD 85
           ++ +D        +  L E  G               + R  +     LD  +      +
Sbjct: 5   VLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLE 64

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +           L+       P                  +     ++  +     
Sbjct: 65  VIARLQSLGLP-----LRVLVLTGQPPS---LFARRCLNSGAAGFVCKHENLHEVINAAK 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +           L E+ +      +  KS          L+ RE+  L  +++G ++ +
Sbjct: 117 AVMAGYTYFPSTTLSEMRM-----GDNAKSDSTLIS---VLSNRELTVLQLLAQGMSNKD 168

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  + +S  TV+ Y   +++K    +    I  A RNN+
Sbjct: 169 IADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 208


>gi|300784158|ref|YP_003764449.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793672|gb|ADJ44047.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 236

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 74/232 (31%), Gaps = 24/232 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +   R + +   P     + R++     V     + ++        F + R        L
Sbjct: 18  QGRVRVAVIEDHPLYRVSVERVLAEAGFVELGAVVDSVAR------FHVHRQPPGSVVLL 71

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +        V  +                 L           +   A     + S  
Sbjct: 72  DLGLPGVAGAAAVLEVCELGHH----------VLVVSAQAEPEVVLGAIAAGARGFLSKD 121

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   + I +  +   G  +        G++    A+           + EL+ RE + L
Sbjct: 122 VDADELLIAIKTVADGGAYVSAVVA---GMIMKDNADR-----PAVSAEAELSPREEQVL 173

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++ G+   +IA+ILGI   TV  Y+  I  KT  + R G +  A+R  ++
Sbjct: 174 RLVAAGERDVDIALILGIGVRTVRGYLDRIRDKTGERRRPGLVKEAIRRGLI 225


>gi|260430505|ref|ZP_05784478.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
 gi|260418534|gb|EEX11791.1| two component transcriptional regulator, LuxR family [Citreicella
           sp. SE45]
          Length = 213

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     +  + E   A S +   R        +D  +      
Sbjct: 6   VIIVDDHPVVREGYRRLIDLQPGLKIVGEAEDARSAYAQFRALQPDVVVMDVTLPGASGV 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + VR +   + D    ++     L           +         Y + + D   +   +
Sbjct: 66  EAVRHI--RQYDDSARIVVFTMHLSAAF------ALKAIKAGATSYITKSSDPKTLIEAI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I  D +  I        +             +L+ R+ E L  ++ G  ++
Sbjct: 118 FGALHGRTVISPDVIEAIA------RDRISGMGTGLS---DLSPRQTEILCLLARGWPAE 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS+ TV N    I      +T +  + +A+   ++
Sbjct: 169 RIAEELAISQKTVRNNHYQIKSILGMETDAQLVWFALETGLL 210


>gi|126442605|ref|YP_001061196.1| transcription regulator [Burkholderia pseudomallei 668]
 gi|254182938|ref|ZP_04889531.1| CblR [Burkholderia pseudomallei 1655]
 gi|126222096|gb|ABN85601.1| capsula synthesis response regulator transcription regulator
           protein [Burkholderia pseudomallei 668]
 gi|184213472|gb|EDU10515.1| CblR [Burkholderia pseudomallei 1655]
          Length = 234

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 15/229 (6%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  + E   S +++   R   +A +     +      +      +  +  +L+   
Sbjct: 1   MSVIMLDDHEVVLSGITYQLKRERDIAVLGTFSRSRQLFDYLAQHGPALAHTRPVLLLDY 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
               Q  D          L+R + +        +L         +               
Sbjct: 61  ALAPQDTD-------GIALIRRLCVQ--FPVCPILIVSGHHQPSIVRLALM------AGA 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y      +  +   +  +    R +         L+      M +           L+
Sbjct: 106 RGYIGKNCTLEELVEAIRRVAGGERYVHPSLAERDDLVLPAAIEMRRGEAERATLASLLS 165

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            RE+E L    +G    +IA  L  S  T++    S  RK         
Sbjct: 166 PRELEVLRLTLQGFEVGQIAEKLSRSNKTISTQKRSAYRKLGISGDREL 214


>gi|145300026|ref|YP_001142867.1| LuxR family two-component response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852798|gb|ABO91119.1| two-component system response regulator, LuxR family [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 214

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 32/238 (13%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q  IV+  +       +      +   A+++  D   S T               LL  
Sbjct: 3   SQFTIVIADDHPLFRGALYQAVHMAINDAQLLEADSINSLTS--------------LLGE 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +     F  +  +    +     ++         +             
Sbjct: 49  HPEVDLLLLDLKMPGANGFSGLAHL--RGQYPDLPIVVVSASEDAAII------QQVLRL 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +  +  +   L  +      +                   +       K   
Sbjct: 101 GALGFIPKSVPMKELVNALNTVIGGDNWVPA---------GISLHPESEDGPDFASKLAS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT ++ + L  + +G  + + A  L +S  T+  +I ++ RK   K R+ A+  A++ 
Sbjct: 152 LTPQQYKVLVMLRDGSLNKQFAWELNVSEATIKAHITAVFRKLGVKNRTQAV-IALQQ 208


>gi|22651421|gb|AAL13333.1| response regulator [Pseudomonas mendocina]
          Length = 220

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 32/217 (14%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVG-----ASHFLLVRWD----LFQEQKLDSIVSSD 81
           D  + +  +D   +    + +L   +G      S       D          LD  +   
Sbjct: 17  DQESVIYIVDDDNAVLEALSSLVRSIGLRVKCFSSATAFLNDVGQLACGCLILDVRMPEM 76

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D+ R +A           ++   +F      +P  +         + +  F    + 
Sbjct: 77  SGLDVQRKLAELG--------EQIPIIFISGHGDIPMAVKAIKAGAIDFFTKPFREEDLL 128

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +                    LA  Q                L+ RE + L ++ +G 
Sbjct: 129 GAIRTALK---------------LAPQQKENAPQISELKASYESLSKREQQVLKFVLQGF 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + + A+ L IS  TV  +  +IM+K    +    + 
Sbjct: 174 LNKQTALELDISEATVKVHRHNIMKKMKVSSVQDLVR 210


>gi|294674324|ref|YP_003574940.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294471985|gb|ADE81374.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 197

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVIL 210
           +   + +  + +L  +     +          +  L+ RE+E ++ I +G  + EIA  L
Sbjct: 97  VPEPELVRSLLMLEQHAHGKGEHLPPMPAILSQKILSDREIEVMSLIVQGYINKEIADKL 156

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 157 NIGLATVITHRKNIMDKLGMKSVSALTIYAVMHGYV 192


>gi|115360073|ref|YP_777211.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|115285361|gb|ABI90877.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
          Length = 215

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 65/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       + H+   +     +                    G +   L    
Sbjct: 2   IRIILADDHAVMRDGLRHILETAGGFEIVGEASD---------------GTAALALAERG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+R +                 L   +               
Sbjct: 47  DADVLLLDLSMPGPTGIELIRLVKTRA--------PALRMLVLTMHAEAQYAARAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   +  +   G  +       +         M             L+
Sbjct: 99  TGYLTKDSATAELVQAVTKVAAGGVYVSPQAAESLARTLRAPVEML--------PHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I  G+T   IA  L +S  TV+ Y   I+ K      +  + YAVR+++
Sbjct: 151 ARELDVMRRIVAGQTVTRIASELTLSTKTVSTYKTRILEKMELPHEAALVRYAVRHDL 208


>gi|90962775|ref|YP_536690.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90821969|gb|ABE00607.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 201

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 75/239 (31%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V+I L  + +   S ++ L    D  + +       +   ++  L               
Sbjct: 2   VSIFLAEDQQMLNSALAMLLDLEDDFSVVGTETDGQAALEKVITL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ + + L + D           +    F          A   
Sbjct: 47  KPDVAILDIEMPGLSGLEIAKQLRLMKLDI--------KIIILTTFARSKYFKDALAARV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y         +   +  +     +                 ++  + D        LT
Sbjct: 99  NGYLLKDSSSDSLTNAIKTIMNGDTVFDP----------KLVTSVLNTVDNP------LT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +    ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A + N +
Sbjct: 143 DREQEILAALKTCASTKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRNWI 201


>gi|33597570|ref|NP_885213.1| virulence factors transcription regulator [Bordetella parapertussis
           12822]
 gi|33573998|emb|CAE38318.1| virulence factors transcription regulator [Bordetella
           parapertussis]
          Length = 233

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 26/220 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSSDWPFD 85
           ++ +D        +  L E  G               + R  +     LD  +      +
Sbjct: 29  VLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLE 88

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +           L+       P                  +     ++  +     
Sbjct: 89  VIARLQSLGLP-----LRVLVLTGQPPS---LFARRCLNSGAAGFVCKHENLHEVINAAK 140

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +           L E+ +      +  KS          L+ RE+  L  +++G ++ +
Sbjct: 141 AVMAGYTYFPSTTLSEMRM-----GDNAKSDSTLIS---VLSNRELTVLQLLAQGMSNKD 192

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  + +S  TV+ Y   +++K    +    I  A RNN+
Sbjct: 193 IADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 232


>gi|73538584|ref|YP_298951.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
 gi|72121921|gb|AAZ64107.1| regulatory protein, LuxR [Ralstonia eutropha JMP134]
          Length = 913

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 62/238 (26%), Gaps = 25/238 (10%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS------------IVSSD 81
           AR+  L+  +    +     +  G              ++                V+  
Sbjct: 675 ARVATLEGRLDAAEQALRAVDLYGGWEARDTAGHANDIERPSITRRRLEIAQGQHAVALA 734

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN-----ITPPAGMDNRYCSLTFD 136
              + +      ++      L+              E                +     D
Sbjct: 735 ALDEAIGAAIAHQRFWRLLKLRILRATALDGLARRDEALQEITEALRLASHEGFVRTFLD 794

Query: 137 VARIRIGLMLL--------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  L+               I  +     +  L +          +  G    LT 
Sbjct: 795 EGERIAMLVRSWASAYQTQAAGLGIAPQFVTRLLAKLPSAPVATEAEPALVAGLSDSLTA 854

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+E L  +S G  +  IA  L +S  TV +++  I  K   + R+ A+A      ++
Sbjct: 855 RELEVLQMLSAGLRNRAIAEKLFLSELTVKSHLRKINAKLGAQNRTEAVAIGRSRGLI 912


>gi|146280078|ref|YP_001170235.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558319|gb|ABP72930.1| hypothetical protein Rsph17025_4078 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 53/181 (29%), Gaps = 3/181 (1%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            +    +  +  + S     L         D   +       +  P      +       
Sbjct: 50  AEAEGGEVPEICLLSTGSRSLRDEGVRRSLDGIASAAGDVPVILMPERMDEEDVRDALHL 109

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANMFKSYD-VHWGK 182
                   + +       L L+   G     +        L +   A   +       G 
Sbjct: 110 GVRGLLPTSIEPRVAIAALDLVLAGGCYFPVEVPAGQPFPLPSPGPATGLREAPLAAEGL 169

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  LT R+ E L  +  G ++ EIA  L IS  TV  ++  +MRK     R+     A+R
Sbjct: 170 DMPLTDRQNEVLRSLGAGASNKEIARQLSISEATVKIHVRHLMRKYGVSNRTQVAILAMR 229

Query: 243 N 243
            
Sbjct: 230 K 230


>gi|323357287|ref|YP_004223683.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273658|dbj|BAJ73803.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 215

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 62/213 (29%), Gaps = 13/213 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D        +  +     +  +    G      +R +      LD  +      
Sbjct: 3   RVVVVDDEALVRSGFELILGAAPDIQVVAAVDGDVAVDTIRRERPDVVLLDIRMPGRSGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +   +                  F T            + +         +   +
Sbjct: 63  DILADLRHDDPRPI--------VGILTTFDTDEYIARALHDGASGFLVKDTAPEHLAAMV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L   G ++       +        +          +   LT RE + L+ +  G+++ 
Sbjct: 115 RTLAAGGVVLSPQVSRTLVDGYTGAPDR-----DAVRRIALLTDRERDVLSRLPTGESNA 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           EI   L +S  TV +++++I+ K +  TR  A 
Sbjct: 170 EIGRRLHLSGATVKDHVSAILSKLSVSTRLEAA 202


>gi|296101290|ref|YP_003611436.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055749|gb|ADF60487.1| LuxR family transcriptional regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 206

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 +   +   +   +  +      +    L E  L+             +      
Sbjct: 96  GAAGILTKKMESEELLQAIEWVRQGRIYLPDSCLREHKLI---------RMQNYPSPLCT 146

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L+ R+ E L  + +G ++ +I  +LGI+  TV N++ ++ R+   + R+ A   
Sbjct: 147 LSPRQREILHLVVQGNSNKQICRVLGIAEGTVKNHLHALFRQLGVRNRTEAAMI 200


>gi|254693110|ref|ZP_05154938.1| two component transcriptional regulator, LuxR family protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261213346|ref|ZP_05927627.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260914953|gb|EEX81814.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 213

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 14/220 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H             L   +S       + E         +  +      L   ++     
Sbjct: 2   HFIIADGHPLFRGALRQVLSGQSENVEIIEAGDFDTVRKLVGEKDDTDLLLLDLTMPGGT 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L   +AL        ++           H   E         + + S +  +  I   +
Sbjct: 62  GLSGLVALKALQPALPIIIVSATDDPATIHHALEL------GASGFISKSASMETIGEAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         D   +               +    +   LT ++   LT ++EG  + 
Sbjct: 116 GAVLAGDIWTPDDIDLD--------HPKDPEIESLIARLRTLTPQQTRVLTMLAEGLLNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 168 QIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|302878331|ref|YP_003846895.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
 gi|302581120|gb|ADL55131.1| two component transcriptional regulator, LuxR family [Gallionella
           capsiferriformans ES-2]
          Length = 213

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 27/225 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTEY-----------VGASHFLLVRWDLFQEQKLDSIVSSD 81
           + +++ +D        +  L E             G     ++R   F    LD  +   
Sbjct: 1   MIQILVVDDHALIRKGLKQLLEDTPDLKITGEASSGTEAISMLRAAPFDLMLLDINLPDK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++++     +         +   +   ++      +         Y +       + 
Sbjct: 61  HGIEVLKQFKSEQ--------PQLKIIILSMYPEDQYGVRALKAGAMGYINKQSASDVLI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    + I      ++        N+         ++  L+ RE + L  ++ GK
Sbjct: 113 KAIRHVLSGKKYISEILAEQL------LNNLIGESQELMHQN--LSNREYQTLCLMASGK 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  EI+ I+ +S  TV+ Y + ++ K      + AI YA+ + +V
Sbjct: 165 TLSEISQIMALSPKTVSVYRSRMLAKMTFTNNAEAIHYAITHRLV 209


>gi|239979192|ref|ZP_04701716.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291451071|ref|ZP_06590461.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354020|gb|EFE80922.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 213

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 29/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R             LA ++ ++  +    ++ +     G                LD  +
Sbjct: 15  RVLLAEDQGMMRGALALLLGMEPDLEVVAQVGS-----GDEVVSAALEQRPDVALLDIEM 69

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +    +           L     +    F                +      V 
Sbjct: 70  PGLSGLEAAALLRDH--------LPGCRVVMVTTFGRPGYLRRAMDAGAAGFVVKDGPVE 121

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +     +I                    +          LTGRE + L   +
Sbjct: 122 ELAEAVRRVLRGETVIDPAL----------------AAAALSAGPNPLTGRERDALNASA 165

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G T  +IAV L +S +TV NY+++ + KT+T+ R  A+  A R   +
Sbjct: 166 DGATVADIAVRLRLSESTVRNYLSAAIGKTSTRNRMEAVREARRQGWL 213


>gi|152992224|ref|YP_001357945.1| two-component response regulator [Sulfurovum sp. NBC37-1]
 gi|151424085|dbj|BAF71588.1| two-component response regulator [Sulfurovum sp. NBC37-1]
          Length = 223

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 30/235 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + E   S +S +    + +               +                  
Sbjct: 2   IQITIADDHELIRSGLSMIIEAHNDMHIHTEASSYTELLEALEKAV-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  ++       Y  +        P        +       
Sbjct: 48  -PDLLILDLNLGDTNGLSTLENISSL-----YPSVPILVLSAYP---EEIYALRTFKNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y + +   + +   +  +    + I  ++  EI  L        K           L+
Sbjct: 99  SGYLNKSIVSSELIDAITTIMRGKKYIS-NKFEEILPLGTDLGKEEKDLVEI------LS 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE E L  I+ G+   EIA  + +S  T++ Y   IM K + +T S    +A  
Sbjct: 152 KREFEVLNLIAAGQAPKEIAENMNVSPKTISTYRTRIMEKLSFETTSQLQRFAYE 206


>gi|70731589|ref|YP_261330.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345888|gb|AAY93494.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 208

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 59/190 (31%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR        LD  +      +L+  +            +R   L        
Sbjct: 35  GVDALQMVRDCEPDLVILDICIPKLDGLELLERLGNMP--------RRSRILVLTAQSAA 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y     D++ +   +  +                 LA          
Sbjct: 87  LFANRCMRAGACGYVCKQEDMSELLSAIKAICSGYNYFPS--------LALQVNRNTLGS 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +   +   L  RE+  L   + G+T+ EIA  + +S  TV+ Y   IM+K AT + S  
Sbjct: 139 PLELAQFNSLNDRELMVLQLFAMGQTNKEIAAGMFLSNKTVSTYKKRIMQKLATTSMSEL 198

Query: 237 IAYAVRNNIV 246
           +  A RN ++
Sbjct: 199 VDMAKRNALI 208


>gi|77461110|ref|YP_350617.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385113|gb|ABA76626.1| LuxR family regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 235

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 67/226 (29%), Gaps = 17/226 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +       S    +      +G   F  ++    +         +++          +  
Sbjct: 12  LTRAKEIESAFPILRTFANNIGFQ-FCGIQVSRPESPSFKPFHINNFTKAWN-EEYENNY 69

Query: 96  DKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVA-RIRIGLML 146
            +   +     +   P               N     GM++ +     +    +   + L
Sbjct: 70  SEEDPITSYCHQSMLPFLWNRKAFSKAPQMWNALRNHGMEHGWSQSYLNEENDLCCTISL 129

Query: 147 LFPKGRIILRD------RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             P+  I   +       +  I    +                  L+ RE+E +   + G
Sbjct: 130 ARPQSEIFALELYDQYGVMHFITQHLSELFVHALPPVPAKPPPVRLSTRELEIVRLCAYG 189

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           KT+ EI  IL ++  TVN +I +++ K     +  AI  A +   +
Sbjct: 190 KTAWEIGQILNVAERTVNYHIKNLIVKLNACNKMSAIVKASKLGFL 235


>gi|127512474|ref|YP_001093671.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126637769|gb|ABO23412.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 219

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 69/236 (29%), Gaps = 29/236 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ ++I++  +     + +    + +    +    D   +    +             
Sbjct: 1   MKLENLHIIIADDHPLFRNALRQALSGAFADTQWFEADSAEALQGLLEQ----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                 +    LD  +           + L        V+                    
Sbjct: 50  --GNTAYDLVLLDLQMPGSHG--YSTLIHLRTHFPELPVV------VISAHEDAMTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +   +  +  +   L  +      +  +   E+  +     +   +      K
Sbjct: 100 VHYGSAGFIPKSASMETLSEALTAVLYGDIWLPDNI--ELQEINEDATDQMAA------K 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             +LT ++ + L   +EG  + +IA  LG+S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAVI 207


>gi|134098410|ref|YP_001104071.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911033|emb|CAM01146.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 64/227 (28%), Gaps = 29/227 (12%)

Query: 7   QVNIVLNREDEQRTSFV--SHLPTRSDLLARMI--PLDCTVSWTMRMYALTEYVGASHFL 62
             N+V +  +E  T  V   H   R  + AR++               A    +      
Sbjct: 19  PANMVPHPREELFTVLVVDDHPLLREAIAARLLQMGAGTVHEAASMAEARARAL------ 72

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +      DLV  +           +        P           
Sbjct: 73  --ATGPCDLAILDLGLPDGTGIDLVTELRTQGW----PRIVVLASSDDPYA-----VRAA 121

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   +     +  G+  +   G          +                    
Sbjct: 122 FQAGAQAYLLKSASPMVVTDGVRRVLDGGVYADPSVAPVLA--------AGTRVPGTDNT 173

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             EL+GREVE L  +++G+++ EI   L +S  TV ++++ I RK  
Sbjct: 174 PRELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLG 220


>gi|104780420|ref|YP_606918.1| response regulator [Pseudomonas entomophila L48]
 gi|95109407|emb|CAK14107.1| putative response regulator, LuxR family [Pseudomonas entomophila
           L48]
          Length = 208

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 65/216 (30%), Gaps = 18/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D      + +  L E  G          +    L ++   D ++       L    
Sbjct: 4   VLIVDDHPVIRLAVRMLMERHGYEVVAETDNGVDALQLTRDHLPDIVILDIGIPKLDGLE 63

Query: 91  ALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            ++         +        P   +    +         Y     D+  +   +  +  
Sbjct: 64  VIARITLVSPASKVLVLTSQAPGHFS----MRCMQAGAAGYVCKQQDLTELLSAIKAVLS 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                    L        ++                L+GRE+  L  ++ GK++ EIA  
Sbjct: 120 GYSYFPNQAL--------HKGKTGVGGGTEVEMVERLSGREMMVLQQLARGKSNKEIADS 171

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV+ Y   ++ K   ++    I  A R+ +
Sbjct: 172 MFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRHGL 207


>gi|2808667|emb|CAA11378.1| flhR [Paracoccus denitrificans PD1222]
          Length = 236

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 68/229 (29%), Gaps = 18/229 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           L+ +  +    V   P   D LA  + +   +       +L          +        
Sbjct: 17  LSADRVREILIVDDHPLMCDALALTLKISFGLRNVRTARSLAAAQE----QIRNQGAPDA 72

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +           +                     A     Y 
Sbjct: 73  VILDLNLPDARGAEGLVTLRRQ--------IPDVPITMISADLENAMISAAMAAGAQGYI 124

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           S +     +   L  ++   R+       E      +      +      +   LT +++
Sbjct: 125 SKSLGREALVDSLRRMWEGERVTPDSYQPE------HAGEEDAARAELARRFATLTPQQM 178

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + L  I +GK + EI+  L I+  TV  +I +IM K   + R+ A+  A
Sbjct: 179 KILRLICQGKANKEISYELSIAEATVKTHITAIMFKINARRRTQAVLLA 227


>gi|259909708|ref|YP_002650064.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrpY protein [Erwinia pyrifoliae Ep1/96]
 gi|76152306|gb|ABA39807.1| HrpY [Erwinia pyrifoliae]
 gi|224965330|emb|CAX56862.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrpY protein [Erwinia pyrifoliae Ep1/96]
 gi|283479794|emb|CAY75710.1| Response regulator hrpY [Erwinia pyrifoliae DSM 12163]
          Length = 213

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +  + L  +            +                 +
Sbjct: 5   IRLMVADDHVIMREGLKQIFSLDERLVVVAEAGNGTQVMEGLR---------------VE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DLV  + L           +   L   ++              
Sbjct: 50  PVDLLLLDMSMPGVCGEDLVTRIHLQ--------YPKLPILILTMYSEPQIARRVLKCGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I    L E  + A Y        +    +   LT
Sbjct: 102 LGYITKDNDPETLLAAIHRVARGQRFIDH-VLAEQIVFAEYTHA----SEAMHER---LT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+  + IA  L IS  TV+ + A +M K    T +  + YA+ + ++
Sbjct: 154 AREMQIMLMLARGRGVNHIAEALAISNKTVSTHKARLMEKMMFTTNADIVKYAISHCLI 212


>gi|295837594|ref|ZP_06824527.1| two-component system response regulator TcsR2 [Streptomyces sp.
           SPB74]
 gi|295826582|gb|EDY45254.2| two-component system response regulator TcsR2 [Streptomyces sp.
           SPB74]
          Length = 214

 Score = 93.4 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 61/230 (26%), Gaps = 24/230 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           +  TS V  L    + L R                     GA    + R        LD 
Sbjct: 9   QPVTSRVRVLLADDEHLIRGALAALLALEEDLEVVAEAASGAEALAMARARTPDVAVLDL 68

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       +   +          ++                           +   T  
Sbjct: 69  QMPDGDGVSVATALRSELPGCRCLIV--------TSHGRPGHLKRALEAGVRGFVPKTVS 120

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             R+   +  +    R +  +                   D     D  L+ RE E L +
Sbjct: 121 ARRLAEIIRTVQAGSRYVDPELAA----------------DAIAAGDSPLSAREAEVLEY 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++G    EIA   G+S  TV NY++S + K   + R  A+  A     V
Sbjct: 165 AADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRAARSRGWV 214


>gi|325918633|ref|ZP_08180737.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535140|gb|EGD07032.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 215

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 63/228 (27%), Gaps = 22/228 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   +         +  ++  +  V       +     G +    +R    +    D  
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDVDVVGEAES-----GEAALPQIRQLKPEIVLCDLH 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++   +   +      ++    +   P                + Y     D 
Sbjct: 58  LPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGASGYVGKGGDA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R +       + L          + +        L+ RE+E    +
Sbjct: 110 HELLRAVREVALGRRYLGNTIAQNLAL---------SNLEGGSSPFDALSPRELEVALLL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++G   ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 161 TQGLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 208


>gi|307946995|ref|ZP_07662330.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
 gi|307770659|gb|EFO29885.1| putative transcriptional regulatory protein SgaR [Roseibium sp.
           TrichSKD4]
          Length = 216

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 69/233 (29%), Gaps = 40/233 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +++ L   +    S +S +       + +  +     +   +  ++  VG    +    
Sbjct: 10  PISVTLADSNMLVLSAMSEIFDCDPRFSVVATVSTAEDFLGAVMRVSVQVG---IIDWTL 66

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                QKL  ++        +                       P            A  
Sbjct: 67  PALGGQKLIEVLREQSGAPRILVYGHE-------------TGDLP--------RKALAAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +      V  +      +     +     + E+                       L
Sbjct: 106 AAGFSPRNGPVEGLLETCAAVAAGQMVFPFLDVRELH----------------SDPIHLL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE   L  +S+G ++ ++A   GIS NTV  +++++  K +  +R+ A+A+
Sbjct: 150 TKREKALLEALSKGLSNRQLASEFGISANTVKFHLSNLYEKLSVTSRTQAVAF 202


>gi|146281890|ref|YP_001172043.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145570095|gb|ABP79201.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 192

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 16/175 (9%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +   + F  +  +    +  +  V+    +    V               + 
Sbjct: 29  DLVLLDLNMPGAYGFSGLVLL--RGQYPHLPVVMISAQEDAAVVAR------SREFGASG 80

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +  +  I+  +  +         +   E        AN+ +           LT +
Sbjct: 81  FIPKSSSLETIQEAVRAVLEGDVWWPSNIQDE--------ANVSEEAKAASAGLASLTPQ 132

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +   LT + +G  + +IA  L +S  T+  ++ +I RK   +TR+ A     +  
Sbjct: 133 QFRVLTMVCDGLLNKQIAYELSVSEATIKAHVTAIFRKLGVRTRTQAALLLQQMG 187


>gi|317049512|ref|YP_004117160.1| LuxR family transcriptional regulator [Pantoea sp. At-9b]
 gi|316951129|gb|ADU70604.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 262

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 22/222 (9%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +    E  G         D         +V ++   +       ++      V+  
Sbjct: 28  IKENLERRIEKFGKISHAYAVMDKKNTDN--ILVINNISDEFANEYLENKYQNIDPVVIT 85

Query: 105 PTELFCPVFHTLPENITPPAGMDN-----------RYCSLTFDVARIRIGLML-----LF 148
                          I     MD             +  +  D       L L     L 
Sbjct: 86  ALNRVTSFIWDANLKINSHWPMDKVFIWKSYSFLCGHTFVLHDYHNNMATLSLYYDKYLM 145

Query: 149 PKGRIILRDRLWEIGLLAAYQANMF----KSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                ++     +   +      M     +  +     +  L+ RE E L W S GKT  
Sbjct: 146 ADVGDMIETHKNDFQGILLDIHEMLLQVYRKSEEVAAANTLLSTREAEILYWSSTGKTYA 205

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A +L ++ +T+  ++   ++K   K    AI+ A   N++
Sbjct: 206 EVAEMLQLTVSTIKFHMGKTVKKLGVKNAKHAISLASELNLI 247


>gi|118578818|ref|YP_900068.1| two component LuxR family transcriptional regulator [Pelobacter
           propionicus DSM 2379]
 gi|118501528|gb|ABK98010.1| two component transcriptional regulator, LuxR family [Pelobacter
           propionicus DSM 2379]
          Length = 240

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 15/216 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +   SD +     L   +     +  + E +       L          +  +   +   
Sbjct: 33  ILVASDQILLRAGLRELLHTEPNLDVVGEALDENETIYLTGRLEPDIVLMVVLNRREASI 92

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            + + +           +   T      F              + Y       + +   +
Sbjct: 93  GVTKRLKAQHP---DIGVILVTSCEDTTFARD-----IIRAGASGYLPTRAAQSELINAI 144

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I       +                       LT RE E L +I++G T+ 
Sbjct: 145 HAIRRGDLYIHPSMTRCL------LYGQTSPAVARVPPRKPLTRREAEILGYIAQGHTNR 198

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +IA +L +S  TV ++ A +  K     R   + +A
Sbjct: 199 QIAELLFVSVRTVESHRARLQGKLNAHCRMDLVRHA 234


>gi|149926960|ref|ZP_01915218.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
 gi|149824181|gb|EDM83401.1| two component transcriptional regulator, LuxR family protein
           [Limnobacter sp. MED105]
          Length = 207

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 27/221 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-----------GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           ++ +D  +     +  + +             G      +R D F    LD  +     F
Sbjct: 3   ILIVDDHMIIRRGLVQILDEFDGQYHSEQAADGVEAMQKLRKDNFDAVLLDVALGERDGF 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+++ +             +   +   V+      +       N Y +     A +   L
Sbjct: 63  DVLKSVRSE--------FPKLGVVMLSVYPEAQFALRAIRSGANAYLNKGCSPAELTQAL 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            +       +       +       A+              L+ RE++ L  +++G+T  
Sbjct: 115 QMACAGQVYLTPATANLMANDLRKPADR--------PPHERLSNREMQVLRLMAQGETVQ 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            IA  L +S NTV+ Y A +  K   K     + Y   + +
Sbjct: 167 HIAQALCLSGNTVSTYRARVFEKLELKNLVDLVNYTKLHGL 207


>gi|256789441|ref|ZP_05527872.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces lividans TK24]
 gi|289773332|ref|ZP_06532710.1| AbsA2 [Streptomyces lividans TK24]
 gi|289703531|gb|EFD70960.1| AbsA2 [Streptomyces lividans TK24]
          Length = 220

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 62/238 (26%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + +  + T +  +  +                    G       R  
Sbjct: 2   IRVLIADDEPLIRAGIRMILTSAGDIEVVAEARD---------------GREAVDTARST 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +      E  +    ++         F      +       
Sbjct: 47  AVDVALLDIQMPVMDGLTALA-----ELGRAAPGVRVL---ILTTFGERDNVLRALGHGS 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +         +       +    A  A   +  +    +   LT
Sbjct: 99  AGFLLKDTAPQELIHAVRAAAAGNAYLSPAATRHVVDTLASPAATVRGEEARR-RLAGLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GRE E L  + EG ++      L +S  TV  Y++ ++ K     R  A   A    +
Sbjct: 158 GREREVLALLGEGLSNAAAGARLHMSEATVKTYVSRVLTKLDCDNRVQAALLARDAGL 215


>gi|223937694|ref|ZP_03629596.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893666|gb|EEF60125.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 210

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 67/211 (31%), Gaps = 17/211 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGAS----HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ ++        +  +               +  +L +++K D I+      +L     
Sbjct: 4   ILVIEDEPEMRRNLLTILRLEKFEPSGAQNGRLGIELAKKEKPDLILCDVMMPEL-DGYG 62

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           + +  +          +F        +         + Y +     A +   +     + 
Sbjct: 63  VLKALREDKSTASIPFIFLTAKGEKIDQRNGMNRGADDYLTKPVAKADLLGAISARLSRR 122

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
              ++                             L  RE E L W+++GK++ +IA ILG
Sbjct: 123 EEQIQREF------------KPNFDSSEPLLALGLAPREAEVLLWVTQGKSNGDIASILG 170

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           IS  TV  ++  I  K   ++R+ A   A+ 
Sbjct: 171 ISEWTVKKHLLHIFEKLGVESRNAATLRALE 201


>gi|83644489|ref|YP_432924.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632532|gb|ABC28499.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Hahella chejuensis KCTC 2396]
          Length = 223

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 14/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P   D L+  +      +W  +   L E          +  L  +     ++
Sbjct: 10  RALLVDDHPIVIDALSTSLLALKLCNWIDKANTLAEA---------KEKLANDADFSLVL 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D     A+    + Y  +            +              Y      V 
Sbjct: 61  LDLHLSDAEGIHAMMTMREAYPDIPIIIFSGD---DSTDTIAKAFEYGVRGYVPKNSPVE 117

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   + ++      I    +  +G      A      +         + R+ +   ++ 
Sbjct: 118 VVVSAVKVVLAGSCYIPPHAIRMLGF--EPAAGTVAIGNTAVETRPYFSPRQEQVFHYLL 175

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EG  +  IA  L ++  TV  ++ +I R    + R+ AI  A +  ++
Sbjct: 176 EGMPNKVIAARLDMAEGTVKTHMNTIFRALGVRNRAQAILKARQLGVI 223


>gi|78049832|ref|YP_366007.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78038262|emb|CAJ26007.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 222

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +   V          + V A + L           +D  +     
Sbjct: 9   DHPLFREALRGAVQRVMPGVELFE-----ADNVDALYTLADAQPDADLLLMDLNMPGAQG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  + +        V+         +                 +   + D   I   
Sbjct: 64  FSAL--VHMRSLHPQLPVVVVSAREEPTLMRR------AIDHGAFGFIPKSADSDTIGRA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +    R I  +                        +  +LT ++   L  +  G+ +
Sbjct: 116 LATVLDGERWIPAEAQN--------LPPTDSEEREVGQRLRDLTPQQFRVLQMLGAGRLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +IA  LG+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 168 KQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|84496110|ref|ZP_00994964.1| two-component system response regulator [Janibacter sp. HTCC2649]
 gi|84382878|gb|EAP98759.1| two-component system response regulator [Janibacter sp. HTCC2649]
          Length = 201

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 23/222 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +S    +  + E       L    D  +E + D ++      
Sbjct: 3   RLLLADDQALVRGALSALLSLEPDLTVVAEVGSGDLVL----DAVREHRPDVVLMDVEMP 58

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L    A ++    Y   +         F                +       A++   +
Sbjct: 59  GLDGIAATAQVRATYPETRVLIVTT---FGRPGFLRRAMHSGAMGFVVKDTPAAQLADAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R++                      D     +  LT RE E L    +G +  
Sbjct: 116 RRVHAGLRVVDPALA----------------TDSLVAGESPLTQRETEVLQAARDGSSVA 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L +S  TV N++++ + KT    R+ A+  A  N  +
Sbjct: 160 VIASRLFLSEGTVRNHLSAAIGKTQAANRAEAVLTAESNGWL 201


>gi|124266343|ref|YP_001020347.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124259118|gb|ABM94112.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 248

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 28/227 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF-------QEQKLDSIVSSDWPFDLVR 88
           ++ +D        + A+ + +G    ++              +   D ++      D   
Sbjct: 3   VLLVDDHPLILSALKAVIQGLGDDVTVVGAGSAAAARATLKSDADFDLVLLDLQLGDANG 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L+E    Y  L               + I         +         +   L L+ 
Sbjct: 63  FDLLAELRNAYPALPVVVVS---ASDRTSDVIRSIDMGAMGFVPKRASNDTLFEALRLVM 119

Query: 149 PKGRIILRDRLW------EIGLLAA--YQANMFKSYDVHWGKDF----------ELTGRE 190
             G  +    +           +A         K       K             LT R+
Sbjct: 120 SGGIYVPPMTMGVDGGGGSAAPVAEPDTVPGYMKVIGSQAAKSDYQTTPTLAALGLTPRQ 179

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            + L  + +GK +  IA  L +S  T+ +++A+++R     +R+ A+
Sbjct: 180 TDVLALLLQGKPNKLIARDLNLSVETIKDHVAAVLRALGVNSRTQAV 226


>gi|145588917|ref|YP_001155514.1| response regulator receiver protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047323|gb|ABP33950.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 215

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 65/233 (27%), Gaps = 39/233 (16%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +DE     ++ L   +  + R         +   + +                  
Sbjct: 15  VYVVDDDEAVRDSLTWLLESNGYVVRC--HASAERFLQSLQS------------TDKSTI 60

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +L   +                  F      +   ++        
Sbjct: 61  SCAILDVRMPGMSGLELQERLISENLPM--------PVAFITGHGDVSMAVSTMKRGAVD 112

Query: 130 YCSLTFDVARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
           +    F    +   +  +L        +    +I                      +LTG
Sbjct: 113 FIEKPFKENDLCGLVDRMLAKARVDYSQASQRKITQSLL----------------SKLTG 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 157 RERQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 209


>gi|120553107|ref|YP_957458.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
 gi|120322956|gb|ABM17271.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
          Length = 128

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 36/73 (49%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                  G D  L+ RE   L  ++EG ++  I+  LGIS  TV +++++I  K   + R
Sbjct: 55  ARTPEVAGPDEPLSDREQGVLDLLAEGLSNKAISKQLGISVATVKSHLSNIYGKLQAENR 114

Query: 234 SGAIAYAVRNNIV 246
             A+A A    ++
Sbjct: 115 MQAVARARELGLM 127


>gi|300788437|ref|YP_003768728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797951|gb|ADJ48326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 62/223 (27%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + +   G       R        LD  +     
Sbjct: 3   RVLLADDQAMVRGALATVLGLENDIEVVGQVGSGDEVVAAARETKPDVALLDVQMPGKDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +           L     + C  F          A     +        ++   
Sbjct: 63  LEAAADLRA--------ALPSCRVIICTTFGRPGYLARAMAAGAAGFVVKDAPPEQLVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++      E                        LTGRE + L    +G T 
Sbjct: 115 VRRVHSGLRVVDPALAAE----------------SLATGASPLTGRERDVLREAKDGSTV 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A  L +S  TV N++++ + KT  +TR+ A+  A     +
Sbjct: 159 ADVARALHLSEGTVRNHLSAAIGKTGARTRAEAVRVAEERGWL 201


>gi|327403771|ref|YP_004344609.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327319279|gb|AEA43771.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q+ I+L  + +  T+ +  +  +  +++R+   + +      +   T           
Sbjct: 1   MKQLTILLGDDHQLITTGLRDVLLKEPIVSRVDCANNSTDLLQAVDKYT----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D +               ++  +               F       T   
Sbjct: 50  ---------YDIVFLDIHFGKADGREIATQLLQKQP---YLILAALTSFDDSETIQTTVN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   + D+  +   +         + R         A +        D       
Sbjct: 98  AGFKAFFLKSDDIIELVEWIGNRSFDTFYLSRQTKESYTSQALF-------NDAKKKTHI 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I +  T+  IA  L +S  T+ NY +S+M K      +G +   +   
Sbjct: 151 QLTTREKQVLKLIMDEYTTKRIAEELFLSEKTIENYRSSLMLKLDVTNLTGLVKKTLLLG 210

Query: 245 IV 246
           ++
Sbjct: 211 LL 212


>gi|294339877|emb|CAZ88240.1| putative two-component regulatory systems [Thiomonas sp. 3As]
          Length = 211

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 21/230 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V         L RM+  +        +        A+    +R   +Q   LD
Sbjct: 2   DAARVLIVDDHALVGAGLVRMLEAE-------GLQPHWCGDTAAALDALRDAAWQVVLLD 54

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      DL++ +  +          R   L   +       +    G    Y +   
Sbjct: 55  VSLPGGDGLDLLKRIKATH--------PRLPVLMLSMHAEHLFALRALRGGAAGYLTKDS 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +       R +      ++        +  +           L+ RE++ L 
Sbjct: 107 APGVLLDAIRAATQGKRYLTATVAEQLA------HHFQEGAAADAPAHQTLSDRELQVLL 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I  G+T  E+A  L +S  TV+ +   +M+K   +  +  + Y + + +
Sbjct: 161 RIGAGRTVGEVARELHLSVKTVSTHKTRLMQKMHLERDADLVRYVLDHEL 210


>gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514]
 gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514]
          Length = 122

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M   Y         +   L  +   G  +  +       +A      F+    H  +  E
Sbjct: 1   MPQVYLLKQTPRPELLAALQEVNRGGSPMASN-------IARRVVQSFQQTRPHASEADE 53

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L+ RE E L  ++ G    EIA  L IS  TVN YI  +  K   ++R+ A+A   R
Sbjct: 54  LSNREQEVLDLLARGYLYKEIAENLNISVATVNTYIRRVYEKLHVRSRAQAVAKYTR 110


>gi|170703918|ref|ZP_02894593.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170131175|gb|EDS99827.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
          Length = 215

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 66/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       + H+   +     +                    GA+   L    
Sbjct: 2   IRIILADDHAVMRDGLRHILETAGGFEIVGEASD---------------GAAALALAERG 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+R +                 L   +               
Sbjct: 47  AADVLLLDLSMPGPTGIELIRLVKTRAPS--------LRMLVLTMHAEAQYAARAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   +  +   G  +       +         M             L+
Sbjct: 99  TGYLTKDSATAELVQAVTKVAAGGVYVSPQAAESLARTLRAPVEML--------PHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE++ +  I  G+T   IA  L +S  TV+ Y   I+ K      +  + YAVR+++
Sbjct: 151 ARELDVMRRIVAGQTVTRIASELTLSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 208


>gi|241518233|ref|YP_002978861.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862646|gb|ACS60310.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 236

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 22/226 (9%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
                 S    +  +    G   F  +     +         S +  +            
Sbjct: 16  AAANEHSLKTALSDVARAHGFERFAYLNLHTAKS-----FAVSTYQKEWQSLYFSRSYMA 70

Query: 98  YYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFDVARIRIGL 144
              V+     L      +                +     G+ +      +        L
Sbjct: 71  IDPVVTAAKRLRRAFRWSADFERRRADDGIKEFYDTAAEFGIRSGLSIPIWTGFGQFAIL 130

Query: 145 MLLFPKG---RIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWISEG 200
            L   +                  AA      +       + DF  + RE  CL W +EG
Sbjct: 131 TLASARHLETSGPDDLDTVGAAGAAALIHARLQGTTTPTQRPDFIFSDREALCLRWAAEG 190

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
                IA + G++ +TV   +  +  K    T+  A+A A R  ++
Sbjct: 191 LPMHSIADVTGLTYHTVRWDLDRVKAKLGVYTQKQAVAVASRFGLI 236


>gi|188580322|ref|YP_001923767.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179343820|gb|ACB79232.1| transcriptional regulator, LuxR family [Methylobacterium populi
           BJ001]
          Length = 486

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 71/233 (30%), Gaps = 12/233 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    L     +LAR+         T    A T   G      V     +   
Sbjct: 256 RQSEERFAKAFRLTPVPTVLARLETFT----VTGINAAFTRVFGHGEDAAVGRSCAEIGL 311

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
             +    +   + V+         +    +               +       +  +  L
Sbjct: 312 WVAQAPRERFEEAVQR------TGFVAGQEVCLRHQDGSELDCLASAERVEIGEETFALL 365

Query: 134 TFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  R R    L      ++     +  GL+               G +  LT RE 
Sbjct: 366 VLQDITERKRGERELFEAIETVMADTSWFSRGLIDKLANLRQPGIRDDNGANPTLTLRER 425

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + L  I  G   D IA  L +SRNTV N+ A++ RK     R+ A+ +   N 
Sbjct: 426 QILNLICAGLDDDAIARRLNLSRNTVRNHGAALYRKLGVHKRAEAVIWGRENG 478


>gi|126667193|ref|ZP_01738167.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
 gi|126628349|gb|EAZ98972.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Marinobacter sp. ELB17]
          Length = 221

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 18/224 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTV--SWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
               +    D       L   V  +    +    + + A    +          LD  + 
Sbjct: 1   MAQTIIVADDHPLFRAALKQAVNQAVPDALTVEVDSIKALQAAIEAHPDADLVLLDLNMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
               F  +  + +  +     V+         V     +         + +   +  +  
Sbjct: 61  GAHGFSGL--VFMRGQYPGLPVVVVSGSEQLQVVRRSID------YGASGFIPKSAPLPT 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +      +           A     M         K   LT ++   L  ++E
Sbjct: 113 ITKAIQDVLQGDVWLPEGA-------ADKIERMHSDATDFSEKLASLTPQQFRVLGMLAE 165

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G  + +IA  L +S  T+  +I ++ RK   + R+ A+  A++ 
Sbjct: 166 GLLNKQIAYDLDVSEATIKAHITAVFRKLGVRNRTQAV-IAIQQ 208


>gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces
           violaceoruber]
          Length = 202

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 61/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + E     +  L    D L  +  ++           +               
Sbjct: 2   IRILLAEDMEMVRGALVALLGLEDDLEVVAQVERGDKILPEALKV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +A          L     L                   
Sbjct: 47  RPDVAIIDIGLPGIDGIKAAALLAEE--------LPSCRTLILTSLSRPGVLRRALDAKV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    R I                            +  LT
Sbjct: 99  AGFLPKDASPQDLAEAVRRIAAGHRAIDPQLA----------------LAAWDSAESPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L   +EG  + EIA  L +S  TV NY+ S++ K   + R  A+  A  +  +
Sbjct: 143 EREMEVLRLTAEGDEAPEIAARLHLSTGTVRNYLTSVVTKLNARNRVDAVRIAHESGWL 201


>gi|117922129|ref|YP_871321.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117614461|gb|ABK49915.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 201

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 53/181 (29%), Gaps = 27/181 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LDS +      ++ + +  ++             +F      L
Sbjct: 37  GRDFLAQCPLTQAGCVILDSRMPEITGQEVQQKLLETQSP--------LGVIFLTGHGDL 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  ++        +         +   +     +     +    +  L   +        
Sbjct: 89  PMALSAFRKGACDFFQKPVSGKALVQAIEKAHKE----SQASFEQQHLQQKFA------- 137

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE + L  + +G T+ +I+  + +S  T+  + A IM+K      +  
Sbjct: 138 --------QLTEREQQVLAHVVQGMTNKQISEAMYLSLRTIEVHRAKIMKKLEVSNMAEL 189

Query: 237 I 237
           +
Sbjct: 190 V 190


>gi|157368381|ref|YP_001476370.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157320145|gb|ABV39242.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 196

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 61/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +F+           +++ L+  +       +  +         +     +    D  
Sbjct: 3   LRVAFIDDHDIVRSGFVQLLSLEPDIQVVGEFSSAAQAR-----AGLPGLEAEICICDIS 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL+  +                 +   +                 + S     
Sbjct: 58  MPDGSGLDLLADIPS-----------GIRVVMLSMHDNPALVELALERGACGFLSKRCKP 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  ++ +   ++  +                K   LT RE E    +
Sbjct: 107 EDLITAVRTVASGGVYLMPEIAQQLARV----------------KVDPLTRREREIALLL 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G+   EIAV LG+S  TV+ + A++  K            
Sbjct: 151 AQGQEVREIAVALGLSPKTVHVHRANLFAKLGINNNVELAKR 192


>gi|323357168|ref|YP_004223564.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323273539|dbj|BAJ73684.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 200

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +++   + ++ L      L  +       S       L               
Sbjct: 2   IRVLIADDEDMIRTALAALLRLEPDLEVVGECRDGESAIAEAERL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D    +      +   V +                        
Sbjct: 47  RPDVCLLDLEMPGLDGVDTAARILRRVPSRCVIVTRHARPGVL---------RRALGAGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +   +     +   +  +    R +  +                   D    +   LT
Sbjct: 98  DGFLPKSRPADDVAAVIREVAAGRRYVDPEIAA----------------DALSDERSPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L   + G+T  EIA  L +S  TV N+++S++ K    +R  A  +A     +
Sbjct: 142 DRELDVLRAGARGETVAEIAASLHLSAGTVRNHVSSVLGKLGLASRQQATIHARERGWI 200


>gi|188532676|ref|YP_001906473.1| Response regulator HrpY (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027718|emb|CAO95571.1| Response regulator HrpY (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 213

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +  D L  +            +                 +
Sbjct: 5   IRLMVADDHVIMREGLKQIFSLDDRLVVVAEAGNGTQVMEGLR---------------VE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DLV  + L           +   L   ++              
Sbjct: 50  QVDLLLLDMSMPGVCGEDLVTRIHLQ--------YPKLPILILTMYSEPQIARRVLKCGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I      +I      Q                LT
Sbjct: 102 LGYITKDNDPETLLAAIHRVARGQRFIDHILAEQIVFAECTQVGEALHAR--------LT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+  + IA  L IS  TV+ + + +M K    T +  + YA+ + ++
Sbjct: 154 AREMQIMLMLARGEGVNHIAEALKISNKTVSTHKSRLMDKMMFTTNADIVKYAISHRLI 212


>gi|332366199|gb|EGJ43954.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 199

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       L   +     +  + +   G      ++ +      LD  +      
Sbjct: 3   LLLAEDQSMLRDALAQLLQLQPDVKEVYQAADGQKAIDCLKSETVDVAILDVEMPHQTGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +  +  +           +    F              + Y      +A +   +
Sbjct: 63  DVLEWVKANRPNI--------KVIIVTTFKRPGYFERAVKADVDAYVLKERSIADLMKTI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +    + +  +                       L+ +E   L   ++G ++ 
Sbjct: 115 HTVLDGQKEYSPELMEVLMT-----------------SRNPLSQQERLVLQAAADGLSNK 157

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV NY+++I+ K   + R+ A+        +
Sbjct: 158 EIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQDKGWL 199


>gi|262041813|ref|ZP_06014998.1| nitrate/nitrite response regulator protein NarL [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040805|gb|EEW41891.1| nitrate/nitrite response regulator protein NarL [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 216

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 75/243 (30%), Gaps = 31/243 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + ++  I+L  +     + V  L + +  +  +                    GA    L
Sbjct: 3   QQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASN---------------GAQGIEL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      + +  +                 +   V +   + +T  
Sbjct: 48  AESLDPDLILLDLNMPGMNGLETLDKLREKSLS--------GRVVVFSVSNHEEDVVTAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     +   +   L      G ++       +           ++      +D
Sbjct: 100 KRGADGYLLKDMEPEDLLKALQQAAAGGMVLSEALTPVLA-------ASLRANRATSDRD 152

Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +
Sbjct: 153 ISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQ 212

Query: 243 NNI 245
             I
Sbjct: 213 ERI 215


>gi|167567502|ref|ZP_02360418.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 220

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+NR+ E+     SH  TR  +   +      +               +  +    +  
Sbjct: 1   MVVNRKCERALIVDSHPITRDGIEIVLRNAFANIDVLG-----------TSDMAKAGNSC 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           +  K D ++           + +         ++           +            + 
Sbjct: 50  RLAKPDLVLMDLMLPGAAPLIEMRRILGELPDVKFVVFTAL---KSEARAADAIRHGASG 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +         I          L   + +         G   ELT R
Sbjct: 107 YVLKWCQPDDMVRAVERALSGSIYIDPS-------LDEAKISSILDSRAPSGFADELTRR 159

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E + L  I +G    EIA +L IS  TV+ Y   +M+K      +  I ++ +
Sbjct: 160 EKQVLELIIDGARRREIASLLNISPRTVDCYRQRLMQKLGAHNVADVIHWSYK 212


>gi|24375643|ref|NP_719686.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350554|gb|AAN57130.1|AE015848_8 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 202

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 56/208 (26%), Gaps = 36/208 (17%)

Query: 39  LDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  +    G                         LDS +      ++ + 
Sbjct: 10  VDDDEAILDSLGFMLRQFGYQVQTFSSGRDFLAQCPLTQAGCVILDSRMPEITGQEVQQK 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  ++             +F      LP  ++        +         +   +     
Sbjct: 70  LLETQSP--------LGVIFLTGHGDLPMALSAFRKGACDFFQKPVSGKALVQAIKKAHK 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +                   +           K  +LT RE + L  + +G T+ +I+  
Sbjct: 122 E-------------------SQASFEQQSLQHKFAQLTDREQQVLAHVVQGMTNKQISEA 162

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +S  T+  + A IM+K      +  +
Sbjct: 163 MYLSLRTIEVHRAKIMKKLEVSNMAELV 190


>gi|254249044|ref|ZP_04942364.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124875545|gb|EAY65535.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 215

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       + H+  R+     +                    G+    L +  
Sbjct: 2   IRVILADDHAVMRDGLRHILERAGGFEIVGEASD---------------GSGTLALAKRA 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +L+R +                 L   +               
Sbjct: 47  AADVLLLDLSMPAPTGIELIRLVKRQA--------PSLRTLVLTMHAEAQYAARAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   +  +   G  +       +                       L+
Sbjct: 99  TGYLTKDSATAELVEAVGKVAAGGVYVSPSAAESLA--------HTLRAPAQALPHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  I  G+T   IA  L +S  TV+ Y   I+ K      +  + Y VR+++
Sbjct: 151 AREFDVMRRIVAGQTVTRIASELALSTKTVSTYKTRILEKMGLPHEAALVRYTVRHDL 208


>gi|87123676|ref|ZP_01079526.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
 gi|86168245|gb|EAQ69502.1| possible DNA-binding response regulator [Synechococcus sp. RS9917]
          Length = 261

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 18/240 (7%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLD--CTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++    + R    + L      +A          + W   M  L          L+    
Sbjct: 20  MIGDVQQHRRDSRAVLSHCRTAIASADRALLVSWMGWFEGMGPLVAATSTEEECLLSLQN 79

Query: 69  FQEQKLDSI--VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                L     +       LVR    +        L+    +  P+  T+ E +      
Sbjct: 80  SDADLLVCTDMLEIGSGPSLVRRAKEAH-----PGLKTLMLIQRPIVRTILEAVEAH--- 131

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +  CS     +     +         I  D  +  G++     +         G   EL
Sbjct: 132 CDGLCS---HQSTGTGSVRTALA---AIDSDGTYMDGVITGVLRHGRLGGSSGHGPLAEL 185

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + L  +  G ++ EIA  L +S +TV ++++S++RK     R+ A+  A R  +V
Sbjct: 186 SLREEDVLRGLCRGMSNQEIADALVVSIDTVKSHVSSLLRKLPANDRTHAVVVAFREGLV 245


>gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 74

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|126731960|ref|ZP_01747763.1| two-component response regulator [Sagittula stellata E-37]
 gi|126707492|gb|EBA06555.1| two-component response regulator [Sagittula stellata E-37]
          Length = 213

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 18/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D           +     +  + E   A S +   R        +D  +      
Sbjct: 6   VIIIDDHPVVREGYRRLIDLQPGLKIVGEAEDARSAYAAFRDLRPDVVVMDVTLPGASGI 65

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           + +R +   + D    ++     L           +         Y + + D   +   +
Sbjct: 66  EAIRHI--RQYDDGARIVVFTMHLSAAF------ALKAIKAGATSYITKSSDPKVLVEAI 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I  D +  I            S         +L+ R+ E L  ++ G +++
Sbjct: 118 FGALRGQTVISPDVIEAIAR---------DSISGIGTGLSDLSPRQTEILCLLARGWSAE 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L IS+ TV N    I      +T +  + +A+   ++
Sbjct: 169 RIAGELSISQKTVRNNHYQIKSILGLETDAQLVWFALETGLL 210


>gi|9885632|gb|AAG01455.1|AF282857_3 HrpY [Pantoea stewartii subsp. stewartii]
          Length = 213

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  + +  + L  +            +                 +
Sbjct: 5   IRIMIVDDHVIMREGLKQIFSLDERLVVVSEAGNGTQVMEGLR---------------NE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+  +             +   L   ++              
Sbjct: 50  QVDLLLLDMCMPGLCGEELISRIHSL--------YPQLPILILTMYSEPQIARRVLKCGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I         +LA       ++   + G   +LT
Sbjct: 102 LGYITKDNDPETLLAAIHRVARGQRFID-------QMLAEQIV-FNENMSANEGLHQQLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+  + IA  L IS  TV+ + A +M K   KT +  + YA+ ++++
Sbjct: 154 AREMQIMLKLARGEGVNSIAEALAISNKTVSTHKARLMEKMMFKTNADIVKYAISHHLI 212


>gi|256424881|ref|YP_003125534.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039789|gb|ACU63333.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 207

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 69/242 (28%), Gaps = 37/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              VNI+L  +       +  L  ++  +               +               
Sbjct: 2   QPPVNIILADDHTLFADGIRSLLEQTPYITVQGIASNGQVLIEMLQR------------- 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      ++ + +           +     +    +          +
Sbjct: 49  --HQPDLAILDISMPVLNGLEVTKIIRKD--------MPHIRTIILSSYSDPHLISLSRS 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KD 183
              + Y   T +   +   +  +        +                 +  ++    ++
Sbjct: 99  YGADGYLMKTCNQYDLLQTITRVVRGESCFPQ-------------LPRIQEAEIDHSFRE 145

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE+E L  I++  T+ +IA  L +S  TV  +  +IM+K   K+ +    + +  
Sbjct: 146 FNLTRRELEILHLINQQFTNQQIATHLYLSIYTVETHRKNIMQKLQLKSPAALTRFLLEK 205

Query: 244 NI 245
            +
Sbjct: 206 GL 207


>gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp.
           K90mix]
          Length = 232

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                 T  +  +  G++ L      + R  +  +  L              +     LT
Sbjct: 103 QGIFYKTDQLDLLCKGILCLLNGDFWMSRHLMTRLVRLYRQ------QRTNTYRPACGLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE+E L  +  G+T+  IA  L IS +TV +++ +I RK   K R+ AI +A  +
Sbjct: 157 QRELEILAMLGSGETNMNIAKQLFISEHTVKSHLYNIFRKIEVKNRTQAINWAKDH 212


>gi|70729581|ref|YP_259319.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343880|gb|AAY91486.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 212

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +        + L                 +    M       G      V  +
Sbjct: 1   MNILLVDDHAVVRQGYASLLR---------------AVLPAMQVREAASGEEALARVAEE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           + Q   +D  +      +  R +           L +   LF  +   LP          
Sbjct: 46  VPQLVIMDFGLPGISGLETTRRLRQR--------LPQLRVLFFSMHDELPLVRQALEAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +       +   +  +      I +    ++            + +    +   +T
Sbjct: 98  SGYLTKNSAPQVLIEAVHRVLAGHAYIEQPLATQLA--------CTPAQNASDPRLQSMT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E    +++G  +  IA  L IS  TV+N++  +  K    + +  +   +   +V
Sbjct: 150 QRELEIFVMLAKGTPARVIAEQLCISAKTVSNHLTLLKSKLQVSSHAELVHLGIDMGVV 208


>gi|296135714|ref|YP_003642956.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
 gi|295795836|gb|ADG30626.1| two component transcriptional regulator, LuxR family [Thiomonas
           intermedia K12]
          Length = 211

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 21/230 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   V         L RM+  +        +        A+    +R   +Q   LD
Sbjct: 2   DAARVLIVDDHALVGAGLVRMLEAE-------GLQPHWCGDTAAALDALRDAAWQVVLLD 54

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      DL++ +  +          R   L   +       +    G    Y +   
Sbjct: 55  VSLPGGDGLDLLKRIKATH--------PRLPVLMLSMHAEHLFALRALRGGAAGYLTKDS 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +   +       R +      ++        +  +           L+ RE++ L 
Sbjct: 107 APDVLLDAIRAATQGKRYLTATVAEQLA------HHFQEGAAADAPAHQTLSDRELQVLL 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            I  G+T  E+A  L +S  TV+ +   +M+K   +  +  + Y + + +
Sbjct: 161 RIGAGRTVGEVARELHLSVKTVSTHKTRLMQKMHLERDADLVRYVLDHEL 210


>gi|330811339|ref|YP_004355801.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379447|gb|AEA70797.1| Putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 208

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G       R  +     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRLLMERHGYEVVAETDNGVDALQFARELMPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  +          +         P   +    +         Y     D+  +  
Sbjct: 61  GLEVIARLTA----IPSPMKVLVLTSQAPGHFS----MRCMQTGAAGYVCKQQDLTELLS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L        +                 L+GRE+  L  ++ GKT
Sbjct: 113 AIKAVLSGYSYFPNQAL--------HTVRSSLGNASESDMVDRLSGREMMVLQQLARGKT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K   ++    I  A RN +V
Sbjct: 165 NKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGLV 208


>gi|302560889|ref|ZP_07313231.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
 gi|302478507|gb|EFL41600.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
          Length = 213

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 61/229 (26%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ ++  +    ++ A     G                LD  
Sbjct: 14  IRVLLAEDQGMMRGALALLLGMEPDIEVVAQVAA-----GDVIVDAALAHRPDVALLDIE 68

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +                 L    F                +      V
Sbjct: 69  LPGMSGLDAAAELRERA--------PECRVLILTTFGRPGYLRRAMDAGAAGFLVKDGPV 120

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +     ++                               LT RE + L   
Sbjct: 121 EELASAVRRVLAGETVVDPVLAAA----------------ALSAGPSPLTARERDVLRAS 164

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G T  +IA  + +S +TV N++++++ KT T+ R+ A+  A     +
Sbjct: 165 AGGATVADIAARVHLSESTVRNHLSAVIGKTGTRNRTEALHEARHKGWL 213


>gi|170726595|ref|YP_001760621.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169811942|gb|ACA86526.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 218

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + + +     I   +  +F     +  D +           +  K Y +       
Sbjct: 98  GAVGFIAKSSSKETIAEAIETVFEGNIYLPADIIRT-----KSSPSSKKEYQLLPEMLSS 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT R++  L  +++G+ + +IA  L +S  TV ++++SI++K     R  A+ 
Sbjct: 153 LTRRQLMVLKCMTKGEANKQIAYNLNVSETTVKSHVSSILKKLGVSNRVQAVV 205


>gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 215

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 165 LAAYQANMFKSY--DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           +AA   + ++            +LT RE++ L  +  G ++ +IA  L IS  TV +++ 
Sbjct: 132 VAAQLLHYYRHVVLSQTAPATVDLTSREIQILRCLKTGASNMQIAEDLFISEFTVKSHLY 191

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
            I +K + K R  AIA+A ++
Sbjct: 192 QIFKKLSVKNRVQAIAWANQH 212


>gi|238782956|ref|ZP_04626984.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
 gi|238716159|gb|EEQ08143.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC
           43970]
          Length = 244

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENIT 121
            D +V S+           +       ++   +    P                   ++ 
Sbjct: 42  ADFMVISNRSK-WFEFYTKNNFQYIDPIIITASHRVTPFSWDENIMINSGLKLPKIFDVA 100

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMFKSY 176
               + N +  +  D       L L+  K      +         I +L         S+
Sbjct: 101 KEYDVINGHTFVLHDQYYNLTILSLMTDKDCDEDIEDKIANDKANIQMLLMLIHEKLTSF 160

Query: 177 DVHWGKDFEL---------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                +  +          T RE E + W S GK+  EIA+ILGI   TV +++  ++RK
Sbjct: 161 YNDLNRSSDFCKMGRNEIFTKRENEIIYWASVGKSYPEIALILGIKPTTVKHHMGKVVRK 220

Query: 228 TATKTRSGAIAYAVRNNIV 246
                   AI+ AV   ++
Sbjct: 221 LGVTNAKHAISLAVELQLI 239


>gi|167836083|ref|ZP_02462966.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 279

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 8/218 (3%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASH-FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           R + L+        +  L   +     +   +     ++ +          D      L 
Sbjct: 2   RFLVLNSNAERRDGLKTLLRQIDRHAGYNDAKDWRQAQRLIKLQSFDLIAVDWQDIKRLG 61

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           +                    +                  +     I   L ++   G  
Sbjct: 62  DLRALCQACAPTPVAALTDDASPEHAQALFDAGVLGVIPRSTRPHLIVRALEMVLLGGYY 121

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVECLTWISEGKTSDEIAV 208
           +    L      A  +    ++      +        L+ R+ + + ++  G T+  IA 
Sbjct: 122 VPPSALNLTEPAARVRDGRVEAIISQLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIAR 181

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LGIS  TV  ++ASI ++     R+ A+  A+ N  +
Sbjct: 182 TLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNGWL 217


>gi|311896158|dbj|BAJ28566.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 202

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 58/229 (25%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R      +      L  ++ ++  +     +       G                +D  
Sbjct: 2   IRILLAEDMNMVRGALVALLGMEPDIEVVAEV-----DHGDRILPEALAHRPDIAVIDID 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +           L     L               A   + +       
Sbjct: 57  LPGIDGLTAAARLREQ--------LPGCRSLILTSLGRPGTLRRAMAAKVSGFILKDAPP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +     +I                            D  LTGRE+E L   
Sbjct: 109 ADLARAIRKVSAGESVIDPQLA----------------VAAWESGDCPLTGREIEVLRLA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG    EIA  L +S  TV NY+ +++ K   + R  AI  A     +
Sbjct: 153 AEGAEVAEIASRLFLSSGTVRNYLTTVVSKLNARNRVDAIRVAKAAGWL 201


>gi|304395181|ref|ZP_07377065.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304357434|gb|EFM21797.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 206

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 40/236 (16%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D   TS +++L    D    +I       +                      L 
Sbjct: 5   VYIVDDDAAVTSALTNLLIADDYT--VISFSSADDFLSH---------------ALTPLP 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +     FD+ + +                 +F   F T+P  +         
Sbjct: 48  CCLILDINLPGADGFDVAQALIDRGYAI--------PTIFLTGFGTIPVTVRAMKTGAYE 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +   +  RI   +                E   +A       +       +   LT R
Sbjct: 100 FLTKPVEPERILQAV---------------AEALEIAEQNLASSQERREIVQRHQTLTPR 144

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E +     G  + +IA  +G+S  T   +   +M K   ++ +  +  A R NI
Sbjct: 145 ESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVMEKMNARSLTDLVRAAERLNI 200


>gi|307324677|ref|ZP_07603883.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306889559|gb|EFN20539.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 225

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 14/211 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            +A  + +D     T+   A     G +   +V         +D  +         R + 
Sbjct: 20  RMALRLVIDGEPDLTVVAEA---ADGDAAIAVVEEQRPDVVLMDVRMPGRDGLSTTRELL 76

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                           L    F +    +         +        +I   +  +    
Sbjct: 77  TRRPAP--------RVLMLTTFDSDDLVLGALRAGALGFVLKDTQPPQILDAVRTVADGN 128

Query: 152 RIILRDRLWEIGLLAA---YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            ++       +   A           S +    +   LT RE E    I++G  + EIA 
Sbjct: 129 PVLSPAATARVIAAATGPQSAHARRSSREAARKQLSALTERERETARAIADGLGNPEIAQ 188

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L IS  TV  + +S+  K A + R      
Sbjct: 189 RLHISVATVKAHTSSLFAKLAVENRVQIALL 219


>gi|254703683|ref|ZP_05165511.1| two component transcriptional regulator, LuxR family protein
           [Brucella suis bv. 3 str. 686]
 gi|261754322|ref|ZP_05998031.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261744075|gb|EEY32001.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 213

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 14/220 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H     D       L   +S       + E         +  +      L   ++     
Sbjct: 2   HFIIADDHPLFRGALRQVLSGQSENVEIIEAGDFDTVRKLVGEKDDTDLLLLDLTMPGGT 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L   +AL        ++           H   E         + + S +  +  I   +
Sbjct: 62  GLSGLVALKALQLALPIIIVSATDDPATIHHALEL------GASGFISKSASMETIGEAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         D   +               +    +   LT ++   LT ++EG  + 
Sbjct: 116 GAVLAGDIWTPDDIDLD--------HPKDPEIESLIARLRILTPQQTRVLTMLAEGLLNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +IA  LG+S  TV  +++++++K    +R+ A+    R  
Sbjct: 168 QIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIG 207


>gi|226364986|ref|YP_002782769.1| NarL family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243476|dbj|BAH53824.1| putative NarL family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 223

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 61/234 (26%), Gaps = 32/234 (13%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
             +       V      S  +  +   D   +    +  L                    
Sbjct: 21  GDDHPIFRDGVVRALLASGDIEVVGEADDGAAALALIRELA---------------PDVA 65

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +       +   +  +E             L                     +  
Sbjct: 66  LLDYRMPELDGSQVAAAVRRAEL--------ATRVLLLSAHDESAIVYHALQEGAAGFLP 117

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                A I   ++       ++       +   A       +           L+GRE E
Sbjct: 118 KESTRAEIVKAVLDCAQGRDVLPASLAVGL---AGEVRRRSEPAGPV------LSGREKE 168

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+ G++   IA  L ++ +TV  ++  +  K     R+ A+A A+R  ++
Sbjct: 169 VLALIARGQSIPTIAGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 222


>gi|300215394|gb|ADJ79807.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 201

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 29/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                   +  LA ++ L+   S        TE  G +    V         LD  +   
Sbjct: 6   LAEDQQMLNSALAMLLDLEDDFSVVG-----TETDGQAALEKVITLKPDVAILDIEMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++ + + L + D           +    F          A   N Y         + 
Sbjct: 61  SGLEIAKQLRLMKLDI--------KIIILTTFARSKYFKDALAARVNGYLLKDSPSDSLV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + ++     +                 ++  + D        LT RE E L  +    
Sbjct: 113 NAIKMIMNGDAVFDP----------KLVTSVLNTVDNP------LTNREQEILAALKTCA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A + N +
Sbjct: 157 STKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRNWI 201


>gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
 gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus halodurans C-125]
          Length = 74

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
              +G    LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   GAEFGPKPLLTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VIELIRLG 70


>gi|307822174|ref|ZP_07652406.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
 gi|307736740|gb|EFO07585.1| two component transcriptional regulator, LuxR family [Methylobacter
           tundripaludum SV96]
          Length = 214

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 66/241 (27%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ ++L  +     +    L +    +  +   +                G +   L  
Sbjct: 3   DRIKVILVDDHAVVRAGFRMLLSTEADIDVIAEAER---------------GEAACQLYL 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +R +   + +           L   V + +         
Sbjct: 48  EQQPDVMVLDLSMPGIGGLESIRRICNRDSN--------AKILVFSVHNEMVYVDRAMNA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y +       +   +  +      I       + L          S   +      
Sbjct: 100 GAKGYITKNSAPDILVTAIQKIAGGEIYIEHGLTKNMPL--------QNSETDYQTIVDT 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE +    +++G T+ +IA  L +   TV NY   I  K    T +     A+   +
Sbjct: 152 LSPREFDVFLLLAKGLTAHKIADELCLGYKTVANYGTQIRSKLKVSTVAELAHIAMVLGM 211

Query: 246 V 246
           +
Sbjct: 212 M 212


>gi|83717848|ref|YP_438344.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|257141373|ref|ZP_05589635.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83651673|gb|ABC35737.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 16/229 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQKLDSI 77
            TSF   +    D  A +  L   ++    +  ++    ++  L             D  
Sbjct: 1   MTSFSIKVIIADDHPAVLTGLLHALAPVSSIEVVSACRNSTELLAALNEHPCDVVISDYS 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +   D +   +  ++      L   T +  P            +   +   S + +V
Sbjct: 61  MPDENFGDGISLFSYVQRRYPATRLIALTMISNPAI-----IQNLISHGISTVLSKSDEV 115

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +   + KG  +      E  +   +              +  L+ RE+E +   
Sbjct: 116 GHIIAAVHASYAKGSYLSP--TMEAIVNNGH--------GKSQDGEIPLSPREIEVVRLF 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G + +EIA  L  S+ T+++  A+ MRK    +    + YA++  +V
Sbjct: 166 TSGLSVNEIANRLKRSKQTISSQKANAMRKLGLNSDIDLLKYALKVKLV 214


>gi|56477577|ref|YP_159166.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
 gi|56313620|emb|CAI08265.1| putative two-component response regulator [Aromatoleum aromaticum
           EbN1]
          Length = 208

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 71/237 (29%), Gaps = 33/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       ++H   R       +    +     ++    ++            
Sbjct: 2   TRILIVEDHALVREALAHTLARLGEGVECVEAKGSEEALAQLEESADW------------ 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++     F L+  +A                +                G  
Sbjct: 50  --DLAVIDLMLPDLNGFGLLAVLARR--------FPDVPAIVVSALDDSATIRRAMRGGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + S       +R  +  +   G     +                K       + F LT
Sbjct: 100 SGFVSKASSGEVLRSAVRCVLEGGIYAPSE-----------PEGGAKRSGAPASERFGLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             +   +  +++GK++ EIA +LG+S  TV  ++++I R     +R+ A+    R+ 
Sbjct: 149 AGQTRVMELLAQGKSNREIADLLGLSEGTVKVHMSAIFRALHVSSRAQALIVIARHG 205


>gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C]
 gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C]
          Length = 208

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 29/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R           + LA ++ L+  +    ++       G       R        LD 
Sbjct: 8   PIRILLAEDQSMVREALAALLGLEPDIEVLAQVAR-----GDEVVAAARSHDVNVALLDI 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +           L     +    F              + +      
Sbjct: 63  EMPGMTGIEAAAQLRA--------ALPALKIVVLTTFGRPGYLRRAMEAGASAFLVKDAP 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A++   +  +    R+I                               LT RE E L  
Sbjct: 115 AAQLADAVRKVLAGQRVIDPTLAAA----------------ALAEGANPLTDREREVLRA 158

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              G T+ E+A  LG+S+ TV NY+++ ++K A + R+ A+  A     +
Sbjct: 159 AEFGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVRVAREKGWL 208


>gi|163853740|ref|YP_001641783.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218532598|ref|YP_002423414.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|163665345|gb|ABY32712.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524901|gb|ACK85486.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 236

 Score = 93.0 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 73/246 (29%), Gaps = 26/246 (10%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    ++V + L  +     S V  L   +  +  +                    G   
Sbjct: 1   MRMAKERVRVALIDDHPIFRSGVRGLLGETAGIEVVGEASD---------------GRHA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV         +D  ++      + R +       +         +F  V   L    
Sbjct: 46  LDLVLRTKPDVVIMDITMTGMSGLAVARALREVGSAVH--------IVFLTVNEDLAFVD 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   +  +   G+ +  +        A            H 
Sbjct: 98  EALTAGAQGYVLKRSAGTSLLEAIEAVVLGGQYVDAEMR---APPAPPDRTEAGPPAPHP 154

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G++  LT RE E L  I+ G T  E+++ + IS  +V+ Y     +K   ++R+  + +A
Sbjct: 155 GQEGGLTAREREVLRLIALGMTMKEVSLAMSISAASVDTYKIRGCKKLGLRSRASIVRFA 214

Query: 241 VRNNIV 246
           +    +
Sbjct: 215 LGQGWL 220


>gi|226941833|ref|YP_002796907.1| two-component response regulator [Laribacter hongkongensis HLHK9]
 gi|226716760|gb|ACO75898.1| Probable two-component response regulator [Laribacter hongkongensis
           HLHK9]
          Length = 196

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 10/173 (5%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           DL  + +L  +V  D     +          +  V+   +    P      E +      
Sbjct: 32  DLEPQLRLQQLVLVDLSMPGLAACDWPGLCLHGRVIALSSAPSNP------EGVAWITRG 85

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         ++  +  +      I RD    +GLL     N     D   G    L
Sbjct: 86  AAGYAHAYSTPDLLKQVVATVASGASWIGRDL---LGLLCMQVGNHLSR-DGIDGPGALL 141

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE E +  +  G  + EIA  L IS NTV  +++S+ +K   + R   +  
Sbjct: 142 TEREREVVQALRRGLANKEIARELDISENTVKKHLSSVFQKLGVEDRLQLLIK 194


>gi|187930423|ref|YP_001900910.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187727313|gb|ACD28478.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 222

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 63/242 (26%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + +V+  +     + V  L +       +            +  +            
Sbjct: 2   QPPIQLVIADDHPGVVAAVRRLVSGVHGFEVVGEASNADELLAVLARV------------ 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +      D +  +    +            +   +  T         
Sbjct: 50  ---RCDLAITDYAMPGSRYGDGIILLEFLMRRHPD-----LRVMVLTMLETRALMSNILR 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                  S + +   I  G+         +         L A       +    H     
Sbjct: 102 AGIKVIVSKSDEPQHILEGMQAAVDGRIYLSP------LLNAKLLCRNGEPQPAHDDPVA 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+E L     GKT  EIA  L  S  T+++   + MRK      +    +AVR+ 
Sbjct: 156 KLGKRELEVLRMYVTGKTVSEIAQQLNRSVKTISSQKQTAMRKLELGNEAALFDFAVRHG 215

Query: 245 IV 246
           ++
Sbjct: 216 LL 217


>gi|26000239|gb|AAN75561.1| putative positive transcription regulator BvgA [Bordetella avium
           197N]
          Length = 207

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 19/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D        + AL E  G          L    + +E   + ++       L    
Sbjct: 4   LLIIDDHPVIRFALKALMEKEGFEVVGETDNGLDGISMAREMLPNLVILDIGIPKLDGLE 63

Query: 91  ALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            L+        +         P                  + S   ++         +  
Sbjct: 64  VLTRLQGLCLPMHVLILTGQQPA----LFARRCLNAGAAGFVSKHGNLPGSGDAAKAVVA 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                 +  L +I                       L+ RE+  L  +++G T+ +IA  
Sbjct: 120 GYTYFPKTTLTDI---------RGVESQDDAMMISSLSNRELAVLQLLAQGLTNKDIADS 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  T++ Y   +++K    T    I  A RNN+
Sbjct: 171 MFLSNKTISTYKTRLLQKLNATTLVELIDMAKRNNL 206


>gi|325527140|gb|EGD04544.1| two-component regulatory system response regulator protein
           [Burkholderia sp. TJI49]
          Length = 184

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 19/185 (10%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
               L          +D  ++      L                     L   +   +  
Sbjct: 16  EALALAASLEPDLALMDVGMNGMNGITLAGVFHDR--------FPAIRVLMLSMHDNVEY 67

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                    + Y       + I   +  +                      A        
Sbjct: 68  VTQAVRAGASGYLLKDSPASEIVRAIGAVLAGQTFFSEG-----------LAARMIQASA 116

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT RE + L  ++EG +S +IA   G+S  TV  +  ++ RK   + ++  I 
Sbjct: 117 AASPLDRLTPRERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLEIEGQAELIK 176

Query: 239 YAVRN 243
           +AV +
Sbjct: 177 FAVEH 181


>gi|261880312|ref|ZP_06006739.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
 gi|270333002|gb|EFA43788.1| LuxR family transcriptional regulator [Prevotella bergensis DSM
           17361]
          Length = 197

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +  + +L  +     ++           EL+GRE+E LT I EG  + EIA  L I   T
Sbjct: 103 VRSLLMLEQHAHAQGRNLPDMPKSLSVKELSGREIEVLTLIVEGYINKEIAHQLNIGLTT 162

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +  +IM K   K+ S    YAV +  V
Sbjct: 163 VITHRKNIMDKLGVKSVSALTIYAVMHGYV 192


>gi|325520456|gb|EGC99559.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 510

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 79/251 (31%), Gaps = 18/251 (7%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E ++      R+ E+R +    +      +A  I             A     G + 
Sbjct: 254 MDLEPRKQAERALRQSEERFAKAFRMAP----VATAIVTADRFELLDVNDAFVGMTGHAQ 309

Query: 61  FLLVRWDLFQEQKL-----DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
             ++     +            + +    D     A  +       ++       PV   
Sbjct: 310 ADVLGKSAEEIGLWAERGARQRLDAQLARDGNVRNADVQIRTLDGDVRDCLVSADPV--- 366

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                    G D    +L     R R  + L++     +     +   L+         +
Sbjct: 367 ------AIHGQDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRAN 420

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +  +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  
Sbjct: 421 APDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGE 480

Query: 236 AIAYAVRNNIV 246
           AI +A    IV
Sbjct: 481 AIVWARERGIV 491


>gi|261250453|ref|ZP_05943028.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
 gi|260939022|gb|EEX95009.1| transcriptional regulator LuxR family [Vibrio orientalis CIP
           102891]
          Length = 211

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +                 D 
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAVSGANLLEADSLEALLSLLKK--------------EDE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IQLRAEYPDLPIV------VVSASEEPAVVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               + +    K   LT 
Sbjct: 104 GFIPKSSDMRELVSALNQVLNGEPFFPEGSITN-----------NAACNDLAEKIATLTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|116691694|ref|YP_837227.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|116649694|gb|ABK10334.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
          Length = 215

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       + H+  R+     +                    G+    L    
Sbjct: 2   IRVILADDHAVMRDGLRHILERAGGFEIVGEASD---------------GSGTLALAERA 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +L+R +                 L   +               
Sbjct: 47  AADVLLLDLSMPAPTGIELIRLVKRQA--------PSLRTLVLTMHAETQYAARAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   +  +   G  +       +                       L+
Sbjct: 99  TGYLTKDSATAELVEAVGKVAAGGVYVSPSAAESLA--------HTLRAPAQALPHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  I  G+T   IA  L +S  TV+ Y   I+ K      +  + Y VR+++
Sbjct: 151 AREFDVMRRIVAGQTVTRIASELALSAKTVSTYKTRILEKMGLPHEAALVRYTVRHDL 208


>gi|309782352|ref|ZP_07677078.1| negative regulator of exopolysaccharide production transcription
           regulator protein [Ralstonia sp. 5_7_47FAA]
 gi|308918888|gb|EFP64559.1| negative regulator of exopolysaccharide production transcription
           regulator protein [Ralstonia sp. 5_7_47FAA]
          Length = 251

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N VL        + ++HL      +  +  ++        +    +       L++   
Sbjct: 30  MNTVLIEAHPLVRTGIAHLLRTLKGVTGVTVVEPDEGMFDAIETNADA----GLLVIGLP 85

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L                D +  +       +   +    E   P        +       
Sbjct: 86  LPH-------------LDELSAIGEIMHRPHARHVVVLAESESPDIIRTLMQM-----GL 127

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L L+   G+ I    L     L                K   +T
Sbjct: 128 SGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPALAGDPQTDPKLLGIT 187

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A +  
Sbjct: 188 PRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQRG 244


>gi|239929196|ref|ZP_04686149.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
          Length = 291

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 63/284 (22%), Gaps = 78/284 (27%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  ++    + ++ L +  + +  +                    G   +   R  
Sbjct: 21  LRVVVADDNPVVRAGLTALLSGREDITVVAEAAD---------------GREAYEAARAH 65

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +          V+                         
Sbjct: 66  RPDVILLDVRMPGVDGISALPYLVQ-----IAPVV------MLTYSRESEIVQEALRRGA 114

Query: 128 NRYCSL-TFDVARIRIGLMLLFPKGR---------------------------------- 152
             Y     F   ++   +  +                                       
Sbjct: 115 GGYLVHGEFAADQLVAAVRDVKEGRAHFTSTAAGALLEQLRQGSGTGQALPEGLGGARPT 174

Query: 153 ------------IILRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFELTGREVECLT 195
                                +  L    A                  F+L+ RE E + 
Sbjct: 175 HRNPAGFGLPRTSPPATSAENLSQLQPDVAQSSSGWTGGRPAAPDRSRFQLSTREAEIMD 234

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            I+ G  + +IA    IS  TV N+I  I  K  + +RS A A 
Sbjct: 235 LIASGMNNQQIAAACFISEKTVKNHINRIFAKLHSTSRSEAAAK 278


>gi|114571243|ref|YP_757923.1| two component LuxR family transcriptional regulator [Maricaulis
           maris MCS10]
 gi|114341705|gb|ABI66985.1| two component transcriptional regulator, LuxR family [Maricaulis
           maris MCS10]
          Length = 216

 Score = 93.0 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 27/238 (11%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I L  +    +   S L  +      +   D  V +     + + Y             
Sbjct: 6   RIALVDDHRMFSDGFSALLMQLRDGHIVDVFDDPVDFLKSFQSDSSY------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD ++ +     L+  +          VL        P    +            
Sbjct: 53  -DLIILDLVMRTMNGLALLAAIRER--KSRCPVLMLSGIGADPPLAEM------KKLGAR 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D   +   +      G +  + R +      A                  L  
Sbjct: 104 GFVHKSADTETLLAAV-----DGILAGQTRFFGAPDPDADGDEDDDWPPRGDRPLPRLGQ 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++E +  ++ G T+ E+A  L IS NTV +++ +I       TR+  +  A    ++
Sbjct: 159 RQLEIVHLMAGGATNKEVAATLNISENTVKSHMRAIFEALDVHTRTACVRKAQALGMI 216


>gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 34/243 (13%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E + V ++L  + +     +     R+D +  +                           
Sbjct: 6   EPRPVRVLLVEDHDMVAEALQLALDRADGITVVGRARSRTE---------------AVPY 50

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  ++     D++  +A                L      T    +   
Sbjct: 51  ALEHAPDVVVLDRRLADGDALDVIPRLAAGG----------ARVLVLTGDATPAVAVQVA 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                     +  +  +   +  +   G +   + L  +           +      G  
Sbjct: 101 KVGGAGLLLKSAQLGVLESAVRDVAAGGVVFDPELLPGV---------FDRLTGRGSGGG 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE E L  ++EG T+DEI   LG+SRNT  N++  ++ K   +++  A+A A R 
Sbjct: 152 AALTARERETLDLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGARSKLEAVAVARRE 211

Query: 244 NIV 246
            ++
Sbjct: 212 GLI 214


>gi|152999001|ref|YP_001364682.1| response regulator receiver protein [Shewanella baltica OS185]
 gi|151363619|gb|ABS06619.1| response regulator receiver protein [Shewanella baltica OS185]
          Length = 200

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 27/181 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LDS +      ++ + +  +              +F      L
Sbjct: 37  GRDFLAHCALSQAGCVILDSRMPEITGQEVQQKLLETHSP--------LGVIFLTGHGDL 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  ++        +         +   +     +                   +      
Sbjct: 89  PMALSAFRKGACDFFQKPVSGKALVQAIEKAQRE-------------------SQAAFEQ 129

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K  +LT RE + L  + +G T+ +I+  + +S  T+  + A IM+K      +  
Sbjct: 130 QSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLEVNNMAEL 189

Query: 237 I 237
           +
Sbjct: 190 V 190


>gi|326331141|ref|ZP_08197437.1| two-component system response regulator TcsR2 [Nocardioidaceae
           bacterium Broad-1]
 gi|325951036|gb|EGD43080.1| two-component system response regulator TcsR2 [Nocardioidaceae
           bacterium Broad-1]
          Length = 202

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       ++ L    D L  +  +            +               
Sbjct: 2   IRILLAEDQAMMRGALAVLLGLEDDLEVVAQVGTGTEIVPTALEV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +  R +           L     +    F          A   
Sbjct: 47  RPDVALLDIELPGISGLEAARELTAR--------LPECRVMILTTFSRPGYVREAMAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +      V  +   +  +     ++  D        A                   LT
Sbjct: 99  VGFLVKDGPVEELADAIRRVLRGETVLDPDLAAATLRAA----------------PNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L    +G +  +IA  L ++ +TV NY+++ + KT+T+ ++ A   A RN  +
Sbjct: 143 SRERDVLAASEDGSSIADIASRLFLAPSTVRNYLSAAIGKTSTRNKTEAALTARRNGWL 201


>gi|304312346|ref|YP_003811944.1| Response regulator, LuxR family [gamma proteobacterium HdN1]
 gi|301798079|emb|CBL46301.1| Response regulator, LuxR family [gamma proteobacterium HdN1]
          Length = 209

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +     + +SH+       A +     T     ++ A                
Sbjct: 1   MRILLIDDHAILRAGLSHILHDEFPDAEIGEACDTGEALKQLNAA--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    LD  +      DL+  +                 +    F      +       
Sbjct: 46  PWDLLLLDISLPGRSGLDLLPEIRSKW--------PASKVIVLSSFGDQQFAVRALREGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +       +   +  +    R I  D   ++  L         S +        L+
Sbjct: 98  SAFLTKEKAARELLDAIATVNLGRRFITSDLAEQLASLT--------SSERPRTPHELLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    IS  +T  EIA  L IS  TV+ Y   I+ K    T +  + YA+R+++V
Sbjct: 150 KREFEVFLLISSARTPTEIATQLNISPKTVSTYRTRILEKMNMTTNAEVMQYAIRHDLV 208


>gi|269140739|ref|YP_003297440.1| hypothetical protein ETAE_3398 [Edwardsiella tarda EIB202]
 gi|267986400|gb|ACY86229.1| hypothetical protein ETAE_3398 [Edwardsiella tarda EIB202]
 gi|304560519|gb|ADM43183.1| two-component system response regulator [Edwardsiella tarda FL6-60]
          Length = 196

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 60/223 (26%), Gaps = 36/223 (16%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDS 76
           R +F+           +++ L+  ++      +  E                 Q    D 
Sbjct: 4   RIAFIDDHYIVRSGFVQLLALEEDMAVVGEFSSAAEAR-------AGLPGLDVQVCICDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +  +   DL+  +                 +   +  +              + S    
Sbjct: 57  SMPDESGLDLLADLPS-----------GLAVIMLSMHDSAALVELALDRGARGFLSKRCR 105

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +   G  ++ +   ++                   +   LT RE E    
Sbjct: 106 PEDLVSAVRTVAQGGVYLMPEIAQQLA----------------RTRIDPLTRREREVAMM 149

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +++G    E+A  LG+S  TV+ + A++  K            
Sbjct: 150 LAQGLEVREVAERLGLSPKTVHVHRANLFVKLGVNNNVELAHR 192


>gi|255019078|ref|ZP_05291204.1| two-component response regulator [Listeria monocytogenes FSL
           F2-515]
          Length = 64

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  I+EGK++ EIA  L I+  TV  ++++I+ K   + R+ A  YA ++++V
Sbjct: 1   ILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 54


>gi|11467319|ref|NP_043176.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
 gi|1351750|sp|P48359|YCF29_CYAPA RecName: Full=Probable transcriptional regulator ycf29
 gi|1016120|gb|AAA81207.1| putative OmpR transcriptional regulator [Cyanophora paradoxa]
          Length = 210

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 23/223 (10%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWP 83
           +  ++ LD  +     +      +G            + +++         D I+     
Sbjct: 1   MINILILDTDIGIRNSLKLYLTEIGFHVEESTCVDQAWDILKRKKIDLIICDIIMPGMGG 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+ +  + L+       V+               + I       + Y S  F++  + + 
Sbjct: 61  FNFLHQLRLNTDYCTLPVIL------LTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVI 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +        ++ R  L  + L    + +       +   +F  T RE   L  + EG  +
Sbjct: 115 I------EGVLNRHTLIRLKLEKKQKNSFLLIKSNNLKINF--TPREQSVLNLVVEGLLN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L IS   V  Y++ +  KT T+ R+  + YA+ NN++
Sbjct: 167 KQIAANLNISIRIVEKYVSRLFIKTKTRNRAELVKYALENNLI 209


>gi|298245547|ref|ZP_06969353.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
 gi|297553028|gb|EFH86893.1| two component transcriptional regulator, LuxR family [Ktedonobacter
           racemifer DSM 44963]
          Length = 201

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 65/239 (27%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       +S L +R   +  +  +           AL               
Sbjct: 2   IRVLLAEDQAMVRGALSALLSREKDIEVVAEVGRGNEVMRTALAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         + +          VL R   +    F              
Sbjct: 47  QPDIALLDIEMPGLDGLAAAQALHE--------VLPRCRCVILTTFGRSGYLRRAMESGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       + + I L  +    R++  D                            LT
Sbjct: 99  VGFLLKDAPASELAIALRRVMAGERVVDPDLA----------------LAALSEGMNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L     G +  EIA  L +S  TV N++++ M+K   + R  A   A +   +
Sbjct: 143 PREREVLAATLPGISHAEIATRLALSEGTVRNHLSAAMQKLEARNRMEAARLAEQKGWL 201


>gi|255526737|ref|ZP_05393639.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296187028|ref|ZP_06855428.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255509572|gb|EET85910.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|296048466|gb|EFG87900.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 213

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 10/127 (7%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         Y     D   +   +  ++   +             + +   M +   + 
Sbjct: 90  VEAIRCGVEGYILGKSDEIELMYIIEQVYKGKKYFD----------SYFIDCMVRENSIE 139

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K  +LT RE E L  I +G ++ +I+  L IS NTV  +   I  K   K R+    Y
Sbjct: 140 PEKIEQLTAREKEILCEIGKGMSNQQISKKLCISENTVKKHNNHIFDKLNMKDRTQLALY 199

Query: 240 AVRNNIV 246
           A +  ++
Sbjct: 200 ANKCGML 206


>gi|255263647|ref|ZP_05342989.1| positive regulator AgmR [Thalassiobium sp. R2A62]
 gi|255105982|gb|EET48656.1| positive regulator AgmR [Thalassiobium sp. R2A62]
          Length = 204

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 64/228 (28%), Gaps = 25/228 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D L   +  +  +  T  +  L + +      +   + F    LD  
Sbjct: 1   MRILIADDHELLRDTLVLYLGNEGGIE-TESVGTLKDAIE----AINSSEAFDLVLLDYN 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        ++    +   +                 +     T  A     +   +   
Sbjct: 56  MPGMNGLSGLKEALETNGGQ--------KVALISGEASKQVAETALAAGAAGFVPKSLPA 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    +    D                +           LT RE++ L  +
Sbjct: 108 KSLVNAVKFMAMGEQYAPLD------------FMTAEEEPETHELAKNLTQRELQVLEGL 155

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++GK++ EIA  L I   TV  ++ ++ RK     R+ A   A    +
Sbjct: 156 TQGKSNKEIARDLEIQEPTVKLHMKTLYRKLEASNRTQAALIAREAGL 203


>gi|229822633|ref|YP_002884159.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229568546|gb|ACQ82397.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 216

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 16/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDW 82
            +    D     I +   +     +  + +  GA+    L           +D  +    
Sbjct: 3   RVTLVDDHPVFRIGMAALLDSLPGVTVVGQADGAAAARDLFGGGHETDVVLMDLDLGDGS 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D+ R + L   D    V+         +       +         +   +     +  
Sbjct: 63  GVDVTRDLLLLRPDLRVLVV--------TMHEDDDAVVASVRAGARGFLVKSSPPDAVER 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +     I+    + E  +                    +LT RE E L  ++ G  
Sbjct: 115 AVRAVAAGEMILSP-AVAERAMSYVLGGQRAARL-----PFPQLTDREREVLDLVAHGLD 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  IA  L +S  TV N +A+++ K + + RS AI  A    +
Sbjct: 169 NTAIARRLSLSPKTVRNTVATVLAKLSLRDRSAAIVRARAEGL 211


>gi|224369547|ref|YP_002603711.1| two-component response regulator (response receiver domain/LuxR
           regulator domain) [Desulfobacterium autotrophicum HRM2]
 gi|223692264|gb|ACN15547.1| two-component response regulator (response receiver domain/LuxR
           regulator domain) [Desulfobacterium autotrophicum HRM2]
          Length = 207

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +       + Y             + +L+  G  +         ++  +          
Sbjct: 89  VLQAFRAGASGYLLKGGTPVEFLEAVHVLYSGGVPLTPVIAR---IIIHHLHA------N 139

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              ++  LT RE++ L  + +G T  EI+  L I  ++V++ +  I  K     R  A A
Sbjct: 140 QIIQESCLTPREIKILKLMEQGLTYKEISSSLSIGIHSVHSQVKKIHSKLKAANRREAFA 199

Query: 239 YAVRNNIV 246
            A +  ++
Sbjct: 200 KAKKKGLI 207


>gi|170736603|ref|YP_001777863.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818791|gb|ACA93373.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 231

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IV+  +         +  + ++ LA +   + +      +                 
Sbjct: 6   PIRIVIADDHPAVVIGARYELSATNTLAVVASANNSTELMETL---------------AN 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +      D +   +     K Y  L+        +              
Sbjct: 51  HPCDVLVSDYAMPGTEYGDGLAMFSA--ILKRYPNLRIV---VMTMMENAVALRALLDLG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                S +   + + + +   +  GR +       +           ++     GK   L
Sbjct: 106 IACVVSKSDMTSHLTMAIHAAYTNGRYLSPSMDRIL-----------RAAGNSGGKAPAL 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +   + G + ++IA  L  S+ T++   +S M+K   +     + YA+   +V
Sbjct: 155 SARELEVIRLFASGLSVNDIAEQLSRSKKTISTQKSSAMQKLGIERDVDLVRYAIACGLV 214


>gi|27378578|ref|NP_770107.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351726|dbj|BAC48732.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 226

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 33/229 (14%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV----------RWDLFQEQKLDSI 77
               L   +  +D   S+   +    +  G                 R +L     LD  
Sbjct: 13  REGPLPGLVHVVDDDASFRTAIERRLKLAGYDVATYASSQDLLDHLPRDELPSCILLDVQ 72

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL + ++         ++      F          +         + +     
Sbjct: 73  MPGLSGPDLQKRLSELGSTV--PIV------FLTGHADTATTVRAIKAGAEDFLTKPVSS 124

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +     +  +  ++    +              D        LT RE +    I
Sbjct: 125 GQLIEAI-----ERALSQQETARGLR----------SRLDSRRAHVASLTPRERQVFDLI 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             GK + +IA  LG +  TV  +   +M K    + +  ++ A    ++
Sbjct: 170 VRGKINKQIAYELGTTERTVKAHRHQVMEKMQVSSLAELVSTAQLLGML 218


>gi|91794822|ref|YP_564473.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91716824|gb|ABE56750.1| two component transcriptional regulator, LuxR family [Shewanella
           denitrificans OS217]
          Length = 207

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       ++ L +     A +   +        +              +   
Sbjct: 1   MKILLAEDQAMVRGALAALLSLGGF-ADITQAEDGEQALQLLKQHA----------LSQQ 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F     D  +      +L + +  ++ D       +   +    F              
Sbjct: 50  PFDLLLTDIEMPGRTGLELAQWLRDNQGD----ASPKTKVIVLTTFGRAGYIKRALEAGV 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N +         +   +  +     +I      E+ +LA              G    L 
Sbjct: 106 NGFLLKDAPSDDLIHAIKQVMAGKPVIAP----ELAVLAI-------------GDIDPLN 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L   SEGK++ +IA  L I   TV NY++  + K     R  A   A +   +
Sbjct: 149 DKERRALRLASEGKSTADIAASLFIVEGTVRNYLSEAIAKLNAANRIDAARIARQKGWL 207


>gi|161521689|ref|YP_001585116.1| LuxR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352145|ref|YP_001947772.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221210733|ref|ZP_03583713.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
 gi|160345739|gb|ABX18824.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           ATCC 17616]
 gi|189336167|dbj|BAG45236.1| transcriptional regulator [Burkholderia multivorans ATCC 17616]
 gi|221169689|gb|EEE02156.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD1]
          Length = 510

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 71/235 (30%), Gaps = 5/235 (2%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E R      L    +  A    +    +  +             F+ +      E    S
Sbjct: 257 EPRKLAERALRQSEERFATAFRMAPVATAIVTADRFELLDVNDAFVAMTGHPQDELLGKS 316

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-----NITPPAGMDNRYC 131
                   +      +  +     +++            + +     +     G D    
Sbjct: 317 ADEIGLWAERGARQRIDAQLAKDGIVRNADVQIRTRDGDVRDCVVSADSVAIHGQDCLLI 376

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +L     R R  + L++     +     +   L+         +      +  +LT RE 
Sbjct: 377 ALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARER 436

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 437 DVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|33601970|ref|NP_889530.1| virulence factors transcription regulator [Bordetella
           bronchiseptica RB50]
 gi|33576408|emb|CAE33486.1| virulence factors transcription regulator [Bordetella
           bronchiseptica RB50]
          Length = 227

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 26/220 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSSDWPFD 85
           ++ +D        +  L E  G               + R  +     LD  +      +
Sbjct: 23  VLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLE 82

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +           L+       P                  +     ++  +     
Sbjct: 83  VIARLQSLGLP-----LRVLVLTGQPPS---LFARRCLNSGAAGFVCKHENLHEVINAAK 134

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +           L E+ +      +  KS          L+ RE+  L  +++G ++ +
Sbjct: 135 AVMAGYTYFPSTTLSEMRM-----GDNAKSDSTLIS---VLSNRELTVLQLLAQGMSNKD 186

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  + +S  TV+ Y   +++K    +    I  A RNN+
Sbjct: 187 IADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNL 226


>gi|291528659|emb|CBK94245.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Eubacterium rectale M104/1]
          Length = 218

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 28/240 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IV+  +D   +  ++ + +  D +                 +     G     L    
Sbjct: 1   MKIVIIDDDNLVSLSLNTILSAQDDIEV---------------SAVGDSGQQAVKLYEEH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     +D  +      +    +     D           L    F      +   +   
Sbjct: 46  MPDVMLMDIRMQGMTGLEAAEKILGKYPD--------AKILLLTTFSDDEYIVKAISLGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH----WGKD 183
             Y         I   L  +     +     +  I  L                    K 
Sbjct: 98  KGYILK-QAFESIAPALRAVNNGQTVFGTQIMDRIPHLFGADGKASSGTGQARFIDAMKS 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++++G+E+  +  ++EG  + EIA  L +S  TV NYI+ I+ K   + R+    +  ++
Sbjct: 157 YDISGKELSIIELVAEGLNNREIADELYLSEGTVRNYISVILEKLQLRDRTQLACFYYKS 216


>gi|285018396|ref|YP_003376107.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283473614|emb|CBA16117.1| putative two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 215

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 22/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         +  ++     +       +     G +    +R         D  
Sbjct: 3   IRIFLVDDHTLVRTGMRLILSNQADMKIVGEAES-----GEAAIPQIRQLKPHIVLCDMH 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      ++   +   +      ++    +   P                  Y     D 
Sbjct: 58  MPGVSGLEVTERIVKGDYGTKVIIVSVLEDGPLP--------RRLLEAGAYGYVGKASDA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R +  +    + L          + +        L+ RE+E    +
Sbjct: 110 QELLRAVRDVAMGKRYLGANIAQNLAL---------ANLEGGGSPFDALSPRELEVALLL 160

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G   ++IA  L +S  TVN + A +  K   +        A +  ++
Sbjct: 161 TRGLRQEDIAKRLSLSAKTVNTHKARLFEKVGIQDNIALARLAAQYGLL 209


>gi|332664501|ref|YP_004447289.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333315|gb|AEE50416.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 213

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 28/238 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++N+ +  +D      + +  T    L   +       +   +               
Sbjct: 1   MEKINLAIVEDDPLIRESLENFLTEHPSLKIGLIAKSMEEFLEAIKDAASR--------- 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +  +          V           F    +      
Sbjct: 52  --PALDLLLLDIELPGMSGIQGIYHIKQK-YPDLDIV-------MLTTFEEEEKIFNSLC 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y S    +  IR  +  +   G  +      +   +A +     +          
Sbjct: 102 AGACSYISKRTPLVTIREAIFTVHRGGSYMSPSIARK---IAQHFMPKERKEGEL----- 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L+ R+ E +  I +G +   IA  L IS +TV ++I  I R     +++  I  ++ 
Sbjct: 154 -LSLRQKEIVQGIVDGLSYKMIADKLDISIDTVRDHIKRIYRALEVNSKAEVIRKSLE 210


>gi|313111442|ref|ZP_07797244.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310883746|gb|EFQ42340.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 204

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 33/237 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++  +       V  L    D    +   D                GA    + R    
Sbjct: 1   MLIVDDHPAIRLAV-RLLFERDGFTIVGEADN---------------GAEALQVARKKSP 44

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +++  +   + D           L     +               
Sbjct: 45  DLAILDIGIPKIDGLEVIARLKSLKLD--------TKVLVLTRQNPAQFAPRCLQAGAMG 96

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S   +++ + +    +           L  I   +                   L+ R
Sbjct: 97  FVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLES---------LSDR 147

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+  L +++ G T+  IA  L +S  TV+ Y + IM K    + +G I +A R+ ++
Sbjct: 148 EMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI 204


>gi|196231881|ref|ZP_03130737.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224003|gb|EDY18517.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 195

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 19/190 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     + R    Q   LD I+      +++R +    ++    V     +    V    
Sbjct: 21  GFEALKVCRKVKPQLVVLDLILPELNGLEVLRALRAEMREVRCMVYSGTLDRRLIV---- 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + +   +  +      L  +                  A    +  +  
Sbjct: 77  ----EALQARPHGFVHKSDPLKIFCEALRAVTEGCSYFTP--------FATKLMDDERHL 124

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE   L  I+EG ++ E+A  + I+  TV ++ A +M+K      +  
Sbjct: 125 HTAAS---HLTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQVMQKLGMHDVATL 181

Query: 237 IAYAVRNNIV 246
             YAVR  +V
Sbjct: 182 TRYAVRMGLV 191


>gi|254427534|ref|ZP_05041241.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193703|gb|EDX88662.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 220

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 78/239 (32%), Gaps = 23/239 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     + H+  + D   ++   +        +    E             
Sbjct: 1   MRVLVVDDHQLFLDGIRHILEKLDKEIQITEANSVEKAIQALEHPQE------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       L++ +   +         R   +         +  +      
Sbjct: 48  -LDLALIDLCMPGMDGIALLQSLRERKL--------RLPVVVVSGEDNAAKIRSALELGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   ++   ++   L  +      +      +I  L+  +  +    +    K   +T
Sbjct: 99  LGFIPKSYGSQQMLDALNGVLEGDIYLPDHIEQQINRLSTRRPPLEAEAN-LALKTSGIT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ + L  +++G ++ +IA  L ++ +TV ++++++         +  +  AV  +I+
Sbjct: 158 RRQYDVLQLMAQGYSNKQIASTLFLTEHTVKSHVSALFVILGASNSTSCVQNAVTRDIL 216


>gi|330467964|ref|YP_004405707.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
 gi|328810935|gb|AEB45107.1| two-component system response regulator [Verrucosispora maris
           AB-18-032]
          Length = 203

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 62/223 (27%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D+      L   +S    +  + E   G +              LD  +     
Sbjct: 3   RILLAEDMHMVRGALVALLSLEPDLEVVAEVAEGTAILPNALTHRPDVAVLDIGLPGIDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 ++          L     +                   + +        R+   
Sbjct: 63  LAAAGALSQQ--------LPTCRTIMLTSHADSANIARAMLIGVSGFLPKDAPPTRLADA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I  + +                          LT RE + LT +++G   
Sbjct: 115 IRRVHRGERVIDSEIV----------------VAAFHHGPNPLTERERDVLTHVAKGSDV 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A  L ++  TV NY+++IM K   + R  AI  A     +
Sbjct: 159 SDVAAKLYLAPGTVRNYLSAIMSKIGARNRVDAIRIARDRGWI 201


>gi|297538851|ref|YP_003674620.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297258198|gb|ADI30043.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 202

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 31/219 (14%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
                R  L   ++    TVS      A  E+     F            +D  +S    
Sbjct: 12  DDPAIRDSLTLMVVQEGFTVSTFESAEAFLEHFQTERF--------GCAIVDIRMSGMDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             L   +             +   +F      +P ++         + +      ++   
Sbjct: 64  MQLQEMLTKHHF--------QLPIIFLTGHGDIPMSVRAIRAGAIDFLTKPVTREKLMAS 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           + L   +   IL +R     + +                  ELT RE + +    +G ++
Sbjct: 116 VRLALIESEKILTERANHQNVQSHLA---------------ELTERERDVMALAVQGHSN 160

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            EIA  LGIS  TV  + + +M KT           A  
Sbjct: 161 KEIARQLGISHRTVEIHKSKVMHKTGATNLLDLARIAHE 199


>gi|221197390|ref|ZP_03570437.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
 gi|221204064|ref|ZP_03577082.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221176230|gb|EEE08659.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2]
 gi|221183944|gb|EEE16344.1| transcriptional regulator, LuxR family [Burkholderia multivorans
           CGD2M]
          Length = 510

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 5/235 (2%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           E R      L    +  A    +    +  +             F+ +     +E    +
Sbjct: 257 EPRKLAERALRQSEERFATAFRMAPVATAIVTADRFELLDVNDAFVAMTGHPQEELLGKA 316

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE-----NITPPAGMDNRYC 131
                   +      +  +     +++            + +     +     G D    
Sbjct: 317 ADEIGLWAERGARQRIDAQLAKDGIVRNADVQIRTRDGDVRDCVVSADSVAIHGQDCLLI 376

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
           +L     R R  + L++     +     +   L+         +      +  +LT RE 
Sbjct: 377 ALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARER 436

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 437 DVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|149375829|ref|ZP_01893597.1| putative glycerol regulatory protein [Marinobacter algicola DG893]
 gi|149359954|gb|EDM48410.1| putative glycerol regulatory protein [Marinobacter algicola DG893]
          Length = 257

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + + +   A++   +  +      +  D +   G  + ++ +  +   +       
Sbjct: 133 GACGFITKSSPRAQMTDAIQQILNGNVYLPSDIIRT-GKESTHRRSRHEDNPISPELLNS 191

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R++  L  +S+G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 192 LTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLGVHNRVQAILSA 246


>gi|330828126|ref|YP_004391078.1| putative csgAB operon transcriptional regulatory protein [Aeromonas
           veronii B565]
 gi|328803262|gb|AEB48461.1| Probable csgAB operon transcriptional regulatory protein [Aeromonas
           veronii B565]
          Length = 215

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELT 187
                   + R+  GL  +      + R  L E+          ++  + +  + D  LT
Sbjct: 100 GLFFRQDPLDRLVAGLQKILLGEYWMPRHLLCEL-------VEYYRQGNSYLQRNDTLLT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE E + ++  G ++ EIA  L +S +TV +++ ++ +K   K R  A+++A  
Sbjct: 153 AREQEIIRYLMTGASNVEIADSLFVSEHTVKSHLYNVFKKLNVKNRIQAVSWAKE 207


>gi|312171096|emb|CBX79355.1| Response regulator hrpY [Erwinia amylovora ATCC BAA-2158]
          Length = 213

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +  + L  +            +                 +
Sbjct: 5   IRLMVADDHVIMREGLKQIFSLDERLVVVAEAGNGTQVMEGLR---------------VE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DLV  + L           +   L   ++              
Sbjct: 50  PVDLLLLDMSMPGVCGEDLVTRIHLQ--------YPKLPILILTMYSEPQIARRVLKCGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I      +I       A   ++ +    +   LT
Sbjct: 102 LGYITKDNDPETLLAAIHRVARGQRFIDHALAEQIVF-----AEYTQAGEAMHER---LT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+  + IA  L IS  TV+ + A +M K    T +  + YA+ + ++
Sbjct: 154 AREMQIMLMLARGRGVNHIAEALAISNKTVSTHKARLMEKMMFTTNADIVKYAISHCLI 212


>gi|298717364|ref|YP_003730006.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Pantoea vagans C9-1]
 gi|298361553|gb|ADI78334.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Pantoea vagans C9-1]
          Length = 206

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 72/237 (30%), Gaps = 42/237 (17%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D   TS + +L T  D                  Y +  +  A  FL       
Sbjct: 5   VYIVDDDVAVTSALRNLLTADD------------------YTVISFSSADDFLTHAIPPL 46

Query: 70  Q-EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +     FD+ + +                 +F   F T+P  +        
Sbjct: 47  PCCLILDINLPGADGFDVAQALLDRGYTI--------PTIFLTGFGTIPVTVRAMKTGAY 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +   D  R+   +                E   +A       +     + +   LT 
Sbjct: 99  EFLTKPVDPDRMLQAV---------------AEALRIAEQNMASSEERREIFQRHQTLTP 143

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E +     G  + +IA  +G+S  T   +   +M K   ++ +  +  A R NI
Sbjct: 144 RESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVMEKMNARSLTDLVRAAERLNI 200


>gi|285016912|ref|YP_003374623.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472130|emb|CBA14637.1| putative two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 221

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 65/220 (29%), Gaps = 18/220 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVS--WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           +  L    D       L   V            + V A + L  R        +D  +  
Sbjct: 1   MPTLLIADDHPLFREALRGAVQRVIPGVQLYEADSVEALYALADRHADADLLLMDLNMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              F  +  +          V+         V     +           +   + D   I
Sbjct: 61  AQGFSALVQI--RVLHPQLPVVVVSAREEPTVMRRALD------HGAFGFIPKSSDSDTI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
            + L  +    R    +        A       ++      +  ELT +++  L  +  G
Sbjct: 113 GLALRTVLDGERWAPPE--------AHDAPPTDRAEREVGQRLRELTPQQIRVLQMLGAG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + +IA  L +S  T+  ++ +I+RK     R+ A+  A
Sbjct: 165 RLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLLA 204


>gi|170768323|ref|ZP_02902776.1| nitrate/nitrite response regulator protein NarL [Escherichia
           albertii TW07627]
 gi|170123089|gb|EDS92020.1| nitrate/nitrite response regulator protein NarL [Escherichia
           albertii TW07627]
          Length = 216

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N ++      +   P     + ++I +   ++            G     L        
Sbjct: 1   MNNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN-----GEQGIELAESLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +T      + Y 
Sbjct: 56  ILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALKRGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGRE 190
               +   +   L        ++       +           ++      +D  +LT RE
Sbjct: 108 LKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRSTTERDVNQLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +  I
Sbjct: 161 RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 215


>gi|213584171|ref|ZP_03365997.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 144

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 12/153 (7%)

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           +  + +  +          +      I   A   N Y   +     +   L  +    R 
Sbjct: 2   QLHQRWPAMNIL---VYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRY 58

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           I      E  L            +        LT RE + L  I EG T+  I+  L IS
Sbjct: 59  IDPTLNREAIL---------AELNADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHIS 109

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             TV  +  ++MRK      +  +  A R  ++
Sbjct: 110 IKTVETHRMNMMRKLQVHKVTELLNCARRMRLI 142


>gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 201

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 67/213 (31%), Gaps = 33/213 (15%)

Query: 39  LDCTVSWTMRMYA-----LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           ++     T  +       +T   G S   ++  +       D  +     F+L+  +   
Sbjct: 15  VETAELITEELAEHGYTVITANDGESGLAMLLREAPDLVLCDVGMPGMTGFELLEQLRTL 74

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                         +F          +       + Y +   D   +   +     +   
Sbjct: 75  -----APRYAEIPFVFLTAMAQRDSELRGRRLGADDYVTKPVDFEILMSIVQTRLAR--- 126

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
                               +          +L+ REVE L W + GKTS EIA ILG+S
Sbjct: 127 --------------------RPRTHTAHPPVQLSEREVEVLAWSARGKTSGEIATILGLS 166

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + TV+ ++ +   K    TR  A+  A  + I+
Sbjct: 167 KRTVDFHMDNAREKLGVATRIEAVVRASSSGII 199


>gi|163803952|ref|ZP_02197780.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4]
 gi|159172239|gb|EDP57142.1| transcriptional regulator, LuxR family protein [Vibrio sp. AND4]
          Length = 208

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 19/171 (11%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  +        Y  +                     +    
Sbjct: 49  PDLVLLDLKMPGANGMSGLIHLRAE-----YPDIPVVVVS---ASEEASVVTQVKSHGAF 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           L               + +    K   LT 
Sbjct: 101 GFIPKSSDMRELINALNQVLNGDPYFPEGLLTNDQ-----------ACNDLAEKVAALTP 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 150 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTHAVIL 200


>gi|16760119|ref|NP_455736.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142110|ref|NP_805452.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213023861|ref|ZP_03338308.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213163606|ref|ZP_03349316.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213428330|ref|ZP_03361080.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|289825151|ref|ZP_06544468.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298757|pir||AE0648 nitrate/nitrite response regulator protein NarL STY1285 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502413|emb|CAD08368.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29137739|gb|AAO69301.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 216

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 21/229 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N ++      +   P     + +++ +   +S            G     L        
Sbjct: 1   MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASN-----GEQGIDLAESLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +T      + Y 
Sbjct: 56  ILLDLNMPGMNGLETLDKLREKALSGRIVVF--------SVSNHEEDVVTALKRGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGRE 190
               +   +   L        ++       +           ++      +D  +LT RE
Sbjct: 108 LKDIEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATTDRDVTQLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +
Sbjct: 161 RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVW 209


>gi|83749754|ref|ZP_00946730.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|207723132|ref|YP_002253531.1| hypothetical protein RSMK00348 [Ralstonia solanacearum MolK2]
 gi|207743475|ref|YP_002259867.1| hypothetical protein RSIPO_01651 [Ralstonia solanacearum IPO1609]
 gi|83723574|gb|EAP70776.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|206588325|emb|CAQ35288.1| hypothetical protein RSMK00348 [Ralstonia solanacearum MolK2]
 gi|206594872|emb|CAQ61799.1| hypothetical protein RSIPO_01651 [Ralstonia solanacearum IPO1609]
          Length = 222

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 22/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N VL        + ++HL      +  +  ++   +    + A  +       L++   
Sbjct: 1   MNTVLIEAHPLVRTGIAHLLRTLKGVTGVTVVEPDEAMFDAIEAHADA----GLLVIGLP 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L                D +  +       +   +    E   P        +       
Sbjct: 57  LPH-------------LDELSAIGEIMHRPHARHVVVLAESESPDIIRTLMQM-----GL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L L+   G+ I    L     L                K   +T
Sbjct: 99  SGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPSLAGDPQTDPKLLGIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A +  
Sbjct: 159 PRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQRG 215


>gi|329901490|ref|ZP_08272828.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549098|gb|EGF33698.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 210

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 71/225 (31%), Gaps = 17/225 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   +     M    E   A     L+R + +    LD  +   
Sbjct: 1   MTRILVVDDHAVVRAGVHYFIDDIPDMEIGGEAGTAEEAIRLIRAEDWDIVVLDIAMPDK 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++++ +   +       L        P        +       + Y         + 
Sbjct: 61  SGVEVLKQIKREK-----PDLPVLILSMHPENR---YAVQILRSGASGYVQKEALATELV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    + I       + +            +        L+ RE E    +S+G+
Sbjct: 113 NAIQTIMRGHKYISYAVAELLTM--------DPDTNADKPLHETLSAREYEIFYKLSQGE 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +IA  L +S  TV+ Y A +++K    + +  I YA++ N++
Sbjct: 165 GVTKIADELCLSVKTVSTYRARVLQKMNMTSNADIIYYAIKQNLI 209


>gi|297623791|ref|YP_003705225.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164971|gb|ADI14682.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 503

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 78/241 (32%), Gaps = 20/241 (8%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV--------- 64
           R  + R +   HL   +  +  +       ++       TE  G +   ++         
Sbjct: 271 RRSQARFAQAFHLGPVAACITTLARDARHETFLEVNGMFTELTGYTADEVLGRTAHELGM 330

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 + K+ + + +   F  +     ++ +   +VL     +           +    
Sbjct: 331 WSSREDQSKVHAALGAGSGFRNLELQVETKANGLRDVLLSAETITLGGDAGDERGLLKLF 390

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                          +   L  +           +  +  +        ++         
Sbjct: 391 ---YDITERKRGEEALFRALQEVMSDTAWFSTQVMERLAQI--------RAGRPKAAPSV 439

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  +++GK+++ IA  LG++R TV NYI+ +  K    +R+ A+ +A    
Sbjct: 440 ALTERERQVLAQLAQGKSNEAIAAELGLARQTVRNYISVLYDKIGVHSRAEAVVWARERG 499

Query: 245 I 245
           +
Sbjct: 500 M 500


>gi|196231626|ref|ZP_03130484.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
 gi|196224479|gb|EDY18991.1| two component transcriptional regulator, LuxR family
           [Chthoniobacter flavus Ellin428]
          Length = 219

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 66/241 (27%), Gaps = 33/241 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   +++  +     SF+            +           R+  L+           
Sbjct: 11  VETTRVLVVEDQGMFRSFLEEWVPSQSDFVLVGAFTSAEEALRRIETLS----------- 59

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +       L + +          V      L                
Sbjct: 60  ----PHVALLDLQLPGMDGIALAQALRQ--------VRPHLRTLLLSSLSDPLTLTRIRE 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y      +A +   L  +        R     +   +A    + K          
Sbjct: 108 SGVEGYLEKDAPLAELAEALRTVVRGRSYFSRKFTETLAQESAKSEALGK---------- 157

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE + LT +  G+TS EI   +G+S  TV  + +++M K      +  + +A +  
Sbjct: 158 ILSRREQQVLTQVLTGRTSKEIGESIGLSPRTVEFHRSNLMAKLGASNLAELLVHARQRG 217

Query: 245 I 245
           +
Sbjct: 218 L 218


>gi|126444900|ref|YP_001061193.1| LuxR response regulator receiver [Burkholderia pseudomallei 668]
 gi|254182940|ref|ZP_04889533.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254299734|ref|ZP_04967183.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|126224391|gb|ABN87896.1| regulatory protein, LuxR:Response regulator receiver [Burkholderia
           pseudomallei 668]
 gi|157809340|gb|EDO86510.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|184213474|gb|EDU10517.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
          Length = 220

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 16/229 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQKLDSI 77
            T+F   +    D  A +  L   ++    +  ++    ++  L             D  
Sbjct: 1   MTAFSIKVIIADDHPAVLTGLLHALAPVSSIEVVSACRNSTELLAALNEHPCDVVISDYS 60

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  D   D +     S   + Y   +    +   +           +   +   S + +V
Sbjct: 61  MPDDNFGDGISLF--SYVQRRYPGTRL---IALTMISNPAIIQNLISHGISTVLSKSDEV 115

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +   + KG  +      E  +   +            G +  L+ RE+E +   
Sbjct: 116 GHIIAAVHASYAKGSYLSP--TMEAIVNNGH--------GKTQGGEVSLSPREMEVVRLF 165

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G + +EIA  L  S+ T+++  A+ MRK    +    + YA++  +V
Sbjct: 166 TSGLSVNEIANRLKRSKQTISSQKANAMRKLGLNSDIDLLKYALKVKLV 214


>gi|309791021|ref|ZP_07685558.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
 gi|308226936|gb|EFO80627.1| two component transcriptional regulator, LuxR family
           [Oscillochloris trichoides DG6]
          Length = 810

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 66/242 (27%), Gaps = 27/242 (11%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           +  +QQ+ ++L  +       +  +                           + VGA+H 
Sbjct: 594 DDLLQQMRVLLADDHPLFREGMQTML---------------------AARGVQVVGAAHD 632

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L   +L +  + D I+            A           +        V       + 
Sbjct: 633 GLEAQELARRLRPDIILMDMQMPRCDGLDATLAIKAELPDTKILM---LTVSADEENLLA 689

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + Y   + D       L        +                A    + D    
Sbjct: 690 AVKAGASGYLLKSLDSDAFFQMLGEAMRGKVVFSS---GLAAQTLGDFAKPPAASDTTGN 746

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   L+ R+ + L  ++ G T  EIA  L IS  TV  ++  I+       R  AIA   
Sbjct: 747 RLLHLSVRQYDILERVAAGATYKEIASTLCISEATVKYHMGQIVGLLQVSGRREAIALVR 806

Query: 242 RN 243
           + 
Sbjct: 807 KA 808


>gi|221369141|ref|YP_002520237.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
 gi|221162193|gb|ACM03164.1| Two-component response regulator [Rhodobacter sphaeroides KD131]
          Length = 220

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 29/240 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E+ +  +VL  +     + V      S     +                    G     L
Sbjct: 6   EMTRKRVVLADDHPLFRAGVVRTLQESGSFDVVGEAAS---------------GREAVEL 50

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +       L    +                    V       +   
Sbjct: 51  ANRLAPDLVVLDLSMPDGGMMALREIGSRQPAPLIA---------MLTVSEDDDRVLEAL 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
           A     Y         +   L  L      +      ++                     
Sbjct: 102 AAGAAGYLLKGIGSRELISVLEDLVAGRTYVAPTLAAKVLTRL-----KSPRAQGAAAPI 156

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  ++EG ++ E+A+ L +   TV +Y+ +I++K   + R+ A   A R+
Sbjct: 157 DQLTAREEDILRLVAEGCSNKEVALALDLQEKTVKHYMTAILQKLQVRNRTEAALMAQRH 216


>gi|119962528|ref|YP_947428.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1]
 gi|119949387|gb|ABM08298.1| putative transcriptional regulator, LuxR family [Arthrobacter
           aurescens TC1]
          Length = 551

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 72/233 (30%), Gaps = 10/233 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P  + LLA+    +          A    +G +  LL   +L       +  
Sbjct: 317 RELGVDAQPGPALLLAQAGRTEAATDALRAALAERGPLGRAWLLLPMVELLAPGNPAAAE 376

Query: 79  SSDWPFDL-VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD- 136
                 +L                               PE +T        Y S     
Sbjct: 377 IYCRELELTASRYGSPGFLGRA---HHARGSVLMAERRWPEAMTALEAAAQAYRSQRLRY 433

Query: 137 ----VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               +      +     + R    +R     + A   A          G+   LT REVE
Sbjct: 434 ELAEIHDRLASVNAAMGEHRAADAERATAAAIRAQLGAANISWLKT-SGEPGGLTSREVE 492

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L+ +  G ++ +IA  L IS  T   ++A+I  K    +R+ A A+A ++ I
Sbjct: 493 VLSCVLSGSSNRQIADSLTISEKTAGRHLANIFTKIGVTSRTAAAAWARQHGI 545


>gi|150377712|ref|YP_001314307.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032259|gb|ABR64374.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 218

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 22/215 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD----SIVSSDWPFDLVRCMA 91
           +  +D   S+   +  L    G         +    +  D     I+       L     
Sbjct: 5   VHIVDDDKSFRTALARLMGAAGFRTATYESGEDLLARLSDPEAGCILLDLHMPGLSGLEL 64

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             +  +   +L      F      +   +         +         +   +     + 
Sbjct: 65  QDQLAECAPMLPIV---FLTGRAEIRATVQAIKAGAEDFLEKPASREALLEAVDRALRRC 121

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                +      L A               +   LT RE E    I+ G+ + +IA  L 
Sbjct: 122 DARRAEYDRIHALKA---------------RLVSLTPREFEVFGLITRGRRNKQIAYDLS 166

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S  TV  +  S M K    + + A++ A R  ++
Sbjct: 167 TSERTVKAHRRSAMEKLGVGSLAEAVSIAERLGLL 201


>gi|16765108|ref|NP_460723.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56413311|ref|YP_150386.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180331|ref|YP_216748.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161613739|ref|YP_001587704.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553929|ref|ZP_02347672.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993209|ref|ZP_02574304.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168233797|ref|ZP_02658855.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237820|ref|ZP_02662878.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168241348|ref|ZP_02666280.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168260009|ref|ZP_02681982.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168462757|ref|ZP_02696688.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820504|ref|ZP_02832504.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442715|ref|YP_002041017.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450037|ref|YP_002045810.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471212|ref|ZP_03077196.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736641|ref|YP_002114797.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197247808|ref|YP_002146263.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265946|ref|ZP_03166020.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362236|ref|YP_002141873.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198245278|ref|YP_002215378.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389553|ref|ZP_03216164.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927959|ref|ZP_03219160.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352565|ref|YP_002226366.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207856726|ref|YP_002243377.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224583743|ref|YP_002637541.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913667|ref|ZP_04657504.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|16420296|gb|AAL20682.1| response regulator in two-component regulatory system with NarX (or
           NarQ) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127568|gb|AAV77074.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62127964|gb|AAX65667.1| response regulator in two-component regulatory system with NarX (or
           NarQ), regulates anaerobic respiration and fermentation
           (LuxR/UhpA familiy) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161363103|gb|ABX66871.1| hypothetical protein SPAB_01464 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401378|gb|ACF61600.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194408341|gb|ACF68560.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194457576|gb|EDX46415.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712143|gb|ACF91364.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633986|gb|EDX52338.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197093713|emb|CAR59186.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211511|gb|ACH48908.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197244201|gb|EDY26821.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289263|gb|EDY28630.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|197939794|gb|ACH77127.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199601998|gb|EDZ00544.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323301|gb|EDZ08497.1| nitrate/nitrite response regulator protein NarP [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205272346|emb|CAR37226.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205321758|gb|EDZ09597.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328671|gb|EDZ15435.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332136|gb|EDZ18900.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339120|gb|EDZ25884.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342770|gb|EDZ29534.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205350650|gb|EDZ37281.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708529|emb|CAR32850.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224468270|gb|ACN46100.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261246953|emb|CBG24770.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993715|gb|ACY88600.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158291|emb|CBW17790.1| nitrate/nitrite response regulator protein NarL [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312912756|dbj|BAJ36730.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085732|emb|CBY95510.1| Nitrate/nitrite response regulator protein narP [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321224395|gb|EFX49458.1| Nitrate/nitrite response regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322616231|gb|EFY13145.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618412|gb|EFY15302.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625670|gb|EFY22490.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628563|gb|EFY25351.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633727|gb|EFY30467.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638464|gb|EFY35159.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640865|gb|EFY37514.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644085|gb|EFY40630.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648233|gb|EFY44696.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652967|gb|EFY49303.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658797|gb|EFY55053.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662776|gb|EFY58983.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668538|gb|EFY64692.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674030|gb|EFY70125.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675391|gb|EFY71466.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680357|gb|EFY76396.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685840|gb|EFY81832.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322714805|gb|EFZ06376.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323130037|gb|ADX17467.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323191899|gb|EFZ77145.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198146|gb|EFZ83257.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204503|gb|EFZ89508.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205435|gb|EFZ90402.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212877|gb|EFZ97681.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217583|gb|EGA02299.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220741|gb|EGA05184.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225708|gb|EGA09931.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232162|gb|EGA16269.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235788|gb|EGA19868.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241012|gb|EGA25051.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243254|gb|EGA27273.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247648|gb|EGA31595.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251812|gb|EGA35676.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255414|gb|EGA39181.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263103|gb|EGA46646.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267818|gb|EGA51298.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271406|gb|EGA54830.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326623124|gb|EGE29469.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326627625|gb|EGE33968.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332988654|gb|AEF07637.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 216

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N ++      +   P     + +++ +   +S            G     L        
Sbjct: 1   MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASN-----GEQGIDLAESLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +T      + Y 
Sbjct: 56  ILLDLNMPGMNGLETLDKLREKALSGRIVVF--------SVSNHEEDVVTALKRGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGRE 190
               +   +   L        ++       +           ++      +D  +LT RE
Sbjct: 108 LKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATTDRDVTQLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +  I
Sbjct: 161 RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 215


>gi|86135201|ref|ZP_01053783.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
 gi|85822064|gb|EAQ43211.1| two-component system response regulator, LuxR family [Polaribacter
           sp. MED152]
          Length = 213

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 18/177 (10%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +    +A            +   +   V       +        
Sbjct: 52  PDVVLMDINMPVMNGIEATAYIAEHH--------PKVNVMALSVEDDDKTILKMIKAGAV 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L  +   G    ++    +           KS +     D  L  
Sbjct: 104 GYLLKDTEKTVLEKALREIVENGFYHTKNVTNLL----------MKSVNGVLKDDVVLKP 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE+E L       T  E+A  + +S  T++ Y  ++  K   + R G + YAVRN I
Sbjct: 154 REIEFLKLACTEMTYKEVADKMCLSPKTIDGYREALFAKLNVRNRVGMVIYAVRNKI 210


>gi|238921616|ref|YP_002935131.1| transcriptional regulatory protein UhpA [Edwardsiella ictaluri
           93-146]
 gi|238871185|gb|ACR70896.1| transcriptional regulatory protein UhpA [Edwardsiella ictaluri
           93-146]
          Length = 196

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 60/223 (26%), Gaps = 36/223 (16%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDS 76
           R +F+           +++ L+  ++      +  E                 Q    D 
Sbjct: 4   RIAFIDDHYIVRSGFVQLLSLEKDMAVVGEFSSAAEAR-------AGLPGLDVQVCICDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +  +   DL+  +                 +   +  +              + S    
Sbjct: 57  SMPDESGLDLLADLPS-----------GLAVIMLSMHDSAALVELALDRGARGFLSKRCR 105

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +   G  ++ +   ++                   +   LT RE E    
Sbjct: 106 PEDLASAVRTVAQGGVYLMPEIAQQLA----------------RTRIDPLTRREREVAMM 149

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +++G    E+A  LG+S  TV+ + A++  K            
Sbjct: 150 LAQGLEVREVAERLGLSPKTVHVHRANLFIKLGVNNNVELAHR 192


>gi|88797788|ref|ZP_01113376.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Reinekea sp. MED297]
 gi|88779465|gb|EAR10652.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Reinekea sp. MED297]
          Length = 211

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 21/177 (11%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           Q   +D  +       L+  +          V+   +    P                  
Sbjct: 56  QCILIDLDLPDTPGLALLDQILKRWPQS---VVLICSANRQPSS-----VTNAQQLGARG 107

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +     A I   +  +    R I  D L              +       ++ +LTGR
Sbjct: 108 FITKDQSPADILAFVQQIRQGRRWITTDTLT-------------RELAERREENIDLTGR 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   L  +  G ++ EIA  L +S NT+  +   +  K     R+  +  A    ++
Sbjct: 155 QHAILQQMQTGLSTSEIAQALNLSPNTIKTHTRLMYGKLGVSNRTECLNRAAELGLI 211


>gi|157145553|ref|YP_001452872.1| transcriptional regulator NarL [Citrobacter koseri ATCC BAA-895]
 gi|157082758|gb|ABV12436.1| hypothetical protein CKO_01296 [Citrobacter koseri ATCC BAA-895]
          Length = 216

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  ++ +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLVSMAPDISVIGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATSDRDV 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 TQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|70729936|ref|YP_259675.1| sensory box transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344235|gb|AAY91841.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 495

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +        +  + ++  +        +S         ELT RE E L  I 
Sbjct: 388 ELVGAIEEVMRDASWFSQTLIEKLANV-----RNTRSAQAPAVTSAELTTREREVLGLIY 442

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G    EIA  L ++ NTV N++A++  K    +R  AI +A    +
Sbjct: 443 QGLADKEIAAQLQLAPNTVRNHVATLYSKLDVHSRGEAIVWARERGL 489


>gi|294638237|ref|ZP_06716490.1| response regulator UvrY [Edwardsiella tarda ATCC 23685]
 gi|291088490|gb|EFE21051.1| response regulator UvrY [Edwardsiella tarda ATCC 23685]
          Length = 196

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 58/223 (26%), Gaps = 36/223 (16%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDS 76
           R +F+           +++ L+  ++      +  E                      D 
Sbjct: 4   RIAFIDDHYIVRSGFVQLLSLEEDMAVVGEFSSAAEAR-------AGLPGLDVHVCICDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +  +   DL+  +                 +   +                 + S    
Sbjct: 57  SMPDESGLDLLADLPS-----------GLAVIMLSMHDNAALVELALDRGARGFLSKRCR 105

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +   G  ++ +   ++                   +   LT RE E    
Sbjct: 106 PEDLASAVRTVAQGGVYLMPEIAQQLA----------------RTRIDPLTRREREVAMM 149

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +++G    E+A  LG+S  TV+ + A++  K            
Sbjct: 150 LAQGLEVREVAERLGLSPKTVHVHRANLFVKLGVNNNVELAHR 192


>gi|120612238|ref|YP_971916.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590702|gb|ABM34142.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 240

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 57/218 (26%), Gaps = 14/218 (6%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P     +A  +     ++     +  +E +     ++          +D      
Sbjct: 28  VVDDHPLVGRGMAEFLRGHPRLADVRHAHETSEALR----IIASHGSPVLALVDF----- 78

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           W  +      +          +          H     +   A   + +           
Sbjct: 79  WLAEGAATSFIGNLFAMSPETRMLIMSAD---HHPAIVLKVRASGAHGFVHKRESPETFH 135

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +              +   A                D  LT R+ + L  + EG 
Sbjct: 136 AAVNAVLDGASWFDPGATASLSPSA--LGATPLREIHLAPVDLGLTPRQGQILALVLEGL 193

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  IA  L +S +TV  ++ +I++K     R   I+ 
Sbjct: 194 PNKPIANALHLSEHTVKEHLTAILQKLGVSNRVELISR 231


>gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 204

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 29/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + LA ++ L+  +    ++       G       R        LD  + 
Sbjct: 7   VLLAEDQSMVREALAALLGLEPDIEVVAQVAR-----GDEVLAAAREHAVDVALLDIEMP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +     A ++ ++    ++         F       +      + +       A+
Sbjct: 62  GATGIE-----AAAQVNRELPAVKLV---VLTTFGRPGYLRSAMEAGADAFLVKDAPAAQ 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R+I            A                  LT RE E L   ++
Sbjct: 114 LAEAVRKVLAGERVIDPTLAAAALAGGA----------------NPLTDREREVLRAAAD 157

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A     +
Sbjct: 158 GATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAVRTARDKGWL 204


>gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3]
          Length = 500

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ A
Sbjct: 431 SDLVQPMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEA 490

Query: 237 IAYAVRNNIV 246
           I  A+R+ I+
Sbjct: 491 IVKAIRDGII 500


>gi|186476730|ref|YP_001858200.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184193189|gb|ACC71154.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 293

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D +R   +  L  + D  AR             +  L         L+   D        
Sbjct: 9   DAERREGLKALLRQVDRQARFGEAQDWPQAERTLRRL----QPDLLLIDWEDWMSPADAR 64

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++ +     +   +           +++      P      +       ++     + +
Sbjct: 65  ALLVNHPGLPVAVLVDDISPAHVRAFVEKGVLGVIPRST---DPRVIVRALEMVLLGVHY 121

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A          P  R+   D    + L A                   L+ R+ + + 
Sbjct: 122 IPAGALSLDGRASPGRRVRQLDDPRSLELFAT---------PKRSNLTGGLSPRQEQIMR 172

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G T+  IA  LGIS  TV  ++A+I ++     R+ A+  A+ N  +
Sbjct: 173 CVHMGSTNKMIARALGISEGTVKIHLATIFQQLGAPNRAAAV--AIYNGWL 221


>gi|332662577|ref|YP_004445365.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331391|gb|AEE48492.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y S       ++  +  +      +          L+    +     D   
Sbjct: 93  RLRRAGLEAYLSKNITCQELKKAIFTVLGGSGYLQES-------LSVALNSFNAEIDSIS 145

Query: 181 G-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +D  LT RE + L  I E  T+ EIA  L IS  TV  +  +++ K   +  +G +  
Sbjct: 146 KIEDRRLTKREQQILGLIVEEYTNQEIAEELFISIPTVETHRKNLILKMGVRNTAGLVRE 205

Query: 240 AV 241
           A+
Sbjct: 206 AI 207


>gi|300728575|ref|ZP_07061933.1| transcriptional regulator [Prevotella bryantii B14]
 gi|299774144|gb|EFI70778.1| transcriptional regulator [Prevotella bryantii B14]
          Length = 213

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +D + +   +      +     +       LT  E+E L  I++GKT+ EIA     S +
Sbjct: 116 QDAVQKRRYICHRATEILIDSQLKEEPATNLTSTEIEILRSIAQGKTTKEIAAERYSSIH 175

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+N +  +I +K    T   A+ YA R  +V
Sbjct: 176 TINTHRKNIFKKLKVNTAHEAVKYAFRAGLV 206


>gi|299134343|ref|ZP_07027536.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
 gi|298591090|gb|EFI51292.1| two component transcriptional regulator, LuxR family [Afipia sp.
           1NLS2]
          Length = 205

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 40/237 (16%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D      +  L   + L AR+   +  VS+   +  L                 
Sbjct: 7   VYVIDDDPAMRDSLDFLLGAAGLKARL--FESAVSFLEALPTLEH--------------- 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D  + +    +L+R +  S         +    +       +P  +         
Sbjct: 50  GCIVSDVRMPNLDGLELLRRLRESN--------KSLPIIIMTGHGDIPLAVEAMKLGAID 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    F+  R+   +                     AA +            +   L+ R
Sbjct: 102 FIEKPFEDDRLIGTITTALSG---------------AAQRHKGDAVAADIASRIASLSPR 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  +  G ++  IA    IS  T+  Y A++M K    + S  + +A+R  ++
Sbjct: 147 ERQVLEGLIAGLSNKLIARDYDISPRTIEVYRANVMTKMQASSVSELVRFAIRGGLL 203


>gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 221

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                           T     I   +         I  D L      A   A   +   
Sbjct: 96  WMAEVLRSGVRALLPRTATAGEITAAITAAAGALVAIHPDLLG-----AMLCALPGQPRP 150

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                +  LT REVE L+ ++EG  +  IA  L IS +TV  +I SI  K    +R+ A+
Sbjct: 151 PTEAPEQPLTPREVEVLSMLAEGLGNKTIARRLQISEHTVKFHIGSIFGKLEATSRTEAV 210

Query: 238 AYAVRNNIV 246
              VR  ++
Sbjct: 211 TLGVRRGLI 219


>gi|15964305|ref|NP_384658.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307307041|ref|ZP_07586780.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307320121|ref|ZP_07599541.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|15073482|emb|CAC45124.1| Transcriptional regulatory protein [Sinorhizobium meliloti 1021]
 gi|306894167|gb|EFN24933.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306901981|gb|EFN32580.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 215

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 66/219 (30%), Gaps = 14/219 (6%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       +   +S      A+ E    +       D      +   ++      
Sbjct: 6   IIIADDHPLFRGAMRQALSGMAGAPAIVEAGDFAAARRAAADNPDADLMLLDLTMPGVSG 65

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +AL  +     V+           H   +           + S +  +  IR G+ 
Sbjct: 66  LSGLIALRAEFPSLPVMIVSAHDDPATIHRALDL------GAAGFLSKSAGIEEIREGIA 119

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      +                           +   LT ++   L+ ++EG  + +
Sbjct: 120 KVMAGEVFVPPGYDQN--------QEYEPEVADLLHRLQTLTPQQSRVLSMLAEGLLNKQ 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA  LG+S  T+  ++++I+ K    +R+ A+    +  
Sbjct: 172 IAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLG 210


>gi|121603022|ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120591991|gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 219

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 70/225 (31%), Gaps = 21/225 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
             +    D       +   +  +  ++A     G     L          LD  +     
Sbjct: 9   PTVLLVDDHTLFREGMRLMLGSSPLVHAHILDAGNLPDALALQQSVDLVLLDIGLPGIGG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +  +          V+   +    P            +     + S T    +I   
Sbjct: 69  LEGLLSVRQR---WPDAVIVMLSAHDRP-----ELVREALSKGACGFVSKTAQPVQICQE 120

Query: 144 LM--LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           +   L   +G       L               +     G D  LT R+ E L  +++G 
Sbjct: 121 VRRWLYQQRGPEPQPQALPG-----------EAAAGAIPGGDESLTPRQYEVLKLLAQGL 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++  IA  L +S +T+ N++ +I+R     TR+ A+  + R  ++
Sbjct: 170 SNKAIAFKLHLSEHTIRNHVVAILRHFNALTRTEAVMASQRLGLL 214


>gi|114763261|ref|ZP_01442685.1| putative transcriptional regulator protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544059|gb|EAU47069.1| putative transcriptional regulator protein [Roseovarius sp.
           HTCC2601]
          Length = 241

 Score = 92.7 bits (229), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 17/220 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P  SD LA  I L        +     + +GA+  ++           D  + 
Sbjct: 16  VVIVDDHPLYSDALAAAIQLVFPDCRMEK----AQTLGAALTMIENGVSPDLVMFDLKLP 71

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                   + +  +        +            +        A     +         
Sbjct: 72  DVCGISGFQRLREAL-----PDVPVLVISSLT---SAQVVQALMAEGAAGFLPKDAPAPM 123

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +R  L  +      +                     ++    K  ELT ++   +  I  
Sbjct: 124 LRQALRDIASGATYVHPGYQSSAASSTGDV-----PFEALHPKLAELTPQQQRIMKLICA 178

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GK + +IA  L ++  TV  +I +++R+   + R+ A   
Sbjct: 179 GKPNKQIAYELSLAEATVKAHITALLRRLGVQNRTQAAVL 218


>gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 204

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 36/238 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NIV+  +       +  +      +  +            +                 +
Sbjct: 1   MNIVIVDDHPVVRKGIKFILANEKNIEEVKEASNIEEALNIIK---------------NE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   +D +++ +   D++                    +      +  +         
Sbjct: 46  EIEIAIIDLVLNKEDGLDIIAKAKELGL--------GTKFILLSSSISQEDFKRASKLGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      V  I   + ++    +    + L + G L                   +LT
Sbjct: 98  DGYILKEAFVEDILYAISIISRGMKYYYSEVLKQNGQL------------DQNSMINQLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + LT I +G +++EIA +L IS +TV  ++++I+ K     R+  +A+ V N +
Sbjct: 146 EREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSNRTQ-VAFMVNNKL 202


>gi|29654049|ref|NP_819741.1| GacA family DNA-binding response regulator [Coxiella burnetii RSA
           493]
 gi|161830987|ref|YP_001596631.1| transcriptional regulator [Coxiella burnetii RSA 331]
 gi|212212816|ref|YP_002303752.1| response regulator [Coxiella burnetii CbuG_Q212]
 gi|29541315|gb|AAO90255.1| response regulator [Coxiella burnetii RSA 493]
 gi|161762854|gb|ABX78496.1| transcriptional regulator [Coxiella burnetii RSA 331]
 gi|212011226|gb|ACJ18607.1| response regulator [Coxiella burnetii CbuG_Q212]
          Length = 211

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 37/242 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +++     +  L   +  +  +   +                           
Sbjct: 2   ISVLIVDDEQLVREALKLLLKDASGVKVIGEAETGEMALASARE---------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYN---VLQRPTELFCPVFHTLPENITPPA 124
               ++ + I+      D        +  + Y    V+   +E        L E      
Sbjct: 46  ----KRPNVILLDVHLPDFSGLYISQKLLRQYPETKVIILTSEKNKTFSRRLLEV----- 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y +   +   +   +  +    RII      ++ +         K      G   
Sbjct: 97  -GVHSYLTKEAEQEELIQAIKEVQKGKRIISPKIASQLAI--------SKMTSQVSGVLD 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            ++ RE+E L  +  G  ++ IA  L +S  TV+ Y  +I +K   K  +  I   +R  
Sbjct: 148 SISDREMEILLMMVRGVPTETIAQKLHLSPKTVSTYRVAIFKKLNVKNDAELILLGMRQG 207

Query: 245 IV 246
           ++
Sbjct: 208 LL 209


>gi|9297035|sp|O54452|RAIR_RHIET RecName: Full=Transcriptional activator protein raiR
 gi|2897879|gb|AAC38173.1| RaiR [Rhizobium etli]
          Length = 242

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 17/187 (9%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--------- 116
            DL      + ++   +P + V+     +      V++     F PV  +          
Sbjct: 47  CDLAGATDSNPLLMLTYPPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASGWDSGRAY 106

Query: 117 --PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQA 170
              +                      R    +         R    D + ++  LA +  
Sbjct: 107 GFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLH 166

Query: 171 NMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +     S          L+ RE++CL   + G  + +I   L IS + V  Y+AS  RK 
Sbjct: 167 DRAMVLSGMRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKL 226

Query: 229 ATKTRSG 235
              T S 
Sbjct: 227 TVATTSE 233


>gi|284041353|ref|YP_003391283.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283820646|gb|ADB42484.1| two component transcriptional regulator, LuxR family [Spirosoma
           linguale DSM 74]
          Length = 215

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       ++ L + S  +          S   R+                  
Sbjct: 2   IRVLIADDHNVFVEGIASLISGSSDIQVTERCYTVPSVIERL------------------ 43

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
              E+ +D ++       +   + L E         +   +   +               
Sbjct: 44  --SEEAVDVVLLDISFPQIEDGLNLCEHITRS--YPKTKVVALTMHDDASLIKRVVKKGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  ++ + +      +  +   +           +       LT
Sbjct: 100 KGYLLKNTTKTELLQAIQTVYHEKQYFNETIMHILLNDSPKTKKPAAGVGIKPN----LT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E LT +S+G T+ ++A  L +S   V  + +S++ K      +  I  A+    +
Sbjct: 156 PRETEVLTLMSQGLTTQQMATQLFVSAKAVEFHRSSLLMKFGVPNTALLIKTAMEMQYI 214


>gi|255035853|ref|YP_003086474.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254948609|gb|ACT93309.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 220

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 63/231 (27%), Gaps = 29/231 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L  +       V       D L  +  ++    ++  +  L                
Sbjct: 3   TVLLVEDHSIVRMGVR--LLIEDFLPSVTVVEAAT-FSETLKHLQSRF------------ 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F    LD  +     F+++  +   +       ++                I       N
Sbjct: 48  FDLVILDIKIPGGEAFNMIGKIRDIQNK-----VKILVFSSQ---DEELYAIHYVKAGAN 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   +  +   G  I      ++        N     +        L+ 
Sbjct: 100 GYLPKDTSNEELEKAITSVLAGGTYISNVIQDQL------VNNTLLERESKESPLEILSN 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE+E +  +  GK + +IA+ L I  +TV+ Y A I  K            
Sbjct: 154 RELEIMDMLLTGKWTKDIALDLNIKESTVSTYKARIFEKLEVTNILELFKK 204


>gi|170720305|ref|YP_001747993.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169758308|gb|ACA71624.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 208

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 65/216 (30%), Gaps = 18/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D      + +  L E  G          +    L +E   D +V       L    
Sbjct: 4   VLIVDDHPVIRLAVRMLMERHGYDVVAETDNGVAALQLTREYLPDIVVLDIGIPKLDGLE 63

Query: 91  ALSEKDKYYNVLQRP-TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            ++         +        P   +    +       + Y     ++  +   +  +  
Sbjct: 64  VIARMASASPGSRVLVLTSQAPGHFS----MRCMQAGASGYVCKQQELTELLSAIKAVLS 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                    L        +++               L+ RE+  L  ++ G+++ EIA  
Sbjct: 120 GYSYFPNQAL--------HKSRGRVGGASETEMVDRLSAREMMVLQQLARGRSNKEIADS 171

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV+ Y   ++ K    +    I  A R+ +
Sbjct: 172 MFLSNKTVSTYKTRLLLKLNAHSLVDLIELARRHGL 207


>gi|70726587|ref|YP_253501.1| hypothetical protein SH1586 [Staphylococcus haemolyticus JCSC1435]
 gi|68447311|dbj|BAE04895.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 200

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++IV+  +       +  L    D L  +   D  +     + +                
Sbjct: 2   ISIVIAEDQNMLRKAMIQLIEFHDDLKVIDDFDNGIDALQSINSQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +++  +  ++ +           +    F          A   
Sbjct: 47  QPDIAILDIEIPGMTGLEVLSQLRENKIN--------TKVIIVTTFKRPGYFERAVANDV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      V  +   +  +    +      +  +                 + +   LT
Sbjct: 99  DAYVLKERSVDDLVATIHKVLNGEKEYSTSLMTSL-----------------FKEANPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  I EG ++ E+A  L +S  TV NY ++I+ K   + R  A   A     +
Sbjct: 142 HKEQVVLREIGEGLSNKEVADKLYLSNGTVRNYTSNIIDKLEAENRFDAWKKANEKGWI 200


>gi|307329449|ref|ZP_07608610.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306884858|gb|EFN15883.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 191

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 15/195 (7%)

Query: 51  ALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
            +    G +   L R          LD  +      ++ R +   +++           +
Sbjct: 2   EVVGEAGTAADALARIPAARPDVAVLDIRLPDRSGVEVCREIRARDENIRC--------M 53

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F              + Y       A +   +  +     ++       +      
Sbjct: 54  MLTSFADDEALFDAIIAGASGYVLKDIRGAELLSAVRDVAAGRSLLDPVATARVLERL-- 111

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                ++      +   LT +E   L  I EG T+  I   L ++  T+ NY++S++ K 
Sbjct: 112 ---RGQTAAKPDDRLAALTEQERRILLLIGEGLTNRAIGERLHLAEKTIKNYVSSLLAKL 168

Query: 229 ATKTRSGAIAYAVRN 243
             + RS A AY  R 
Sbjct: 169 GMERRSQAAAYVARM 183


>gi|152970764|ref|YP_001335873.1| transcriptional regulator NarL [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206579284|ref|YP_002237929.1| nitrate/nitrite response regulator protein NarL [Klebsiella
           pneumoniae 342]
 gi|238895277|ref|YP_002920012.1| transcriptional regulator NarL [Klebsiella pneumoniae NTUH-K2044]
 gi|288934838|ref|YP_003438897.1| LuxR family transcriptional regulator [Klebsiella variicola At-22]
 gi|290508982|ref|ZP_06548353.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Klebsiella sp. 1_1_55]
 gi|330009827|ref|ZP_08306602.1| nitrate/nitrite response regulator protein NarL [Klebsiella sp. MS
           92-3]
 gi|150955613|gb|ABR77643.1| pleiotrophic regulation of anaerobic respiration [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206568342|gb|ACI10118.1| nitrate/nitrite response regulator protein NarL [Klebsiella
           pneumoniae 342]
 gi|238547594|dbj|BAH63945.1| two-component nitrate/nitrite response regulatory protein
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|288889547|gb|ADC57865.1| two component transcriptional regulator, LuxR family [Klebsiella
           variicola At-22]
 gi|289778376|gb|EFD86373.1| two-component system, NarL family, nitrate/nitrite response
           regulator NarL [Klebsiella sp. 1_1_55]
 gi|328534723|gb|EGF61285.1| nitrate/nitrite response regulator protein NarL [Klebsiella sp. MS
           92-3]
          Length = 216

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 74/243 (30%), Gaps = 31/243 (12%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + ++  I+L  +     + V  L + +  +  +                    GA    L
Sbjct: 3   QQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASN---------------GAQGIEL 47

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     LD  +      + +  +                 +   V +   + +T  
Sbjct: 48  AESLDPDLILLDLNMPGMNGLETLDKLREKSLS--------GRVVVFSVSNHEEDVVTAL 99

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + Y     +   +   L        ++       +           ++      +D
Sbjct: 100 KRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATSDRD 152

Query: 184 F-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +
Sbjct: 153 ISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQ 212

Query: 243 NNI 245
             I
Sbjct: 213 ERI 215


>gi|57233700|ref|YP_182258.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224148|gb|AAW39205.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 226

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I +  + E     +  +  +      +   +        +  + E            
Sbjct: 11  PIRIFIVDDHEIVRQGLKVIINQEQDFELVGESNGQKGL---LKEIAEAH---------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +S    FD+   +           ++         + +    +      
Sbjct: 58  --PDVLLLDIRISGSDGFDIASQLNEKF-----PSIKILIISG---YESELYLVEALDHK 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   + ++   G +   + L+ +    +   N      V  GK   L
Sbjct: 108 VSGFIPKGSSRDYVCSAIRMVALGGTVWHGELLYRVIRGLSRLGNEPNDTKVQIGKS-HL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             RE++ L+ +++GK + EI   L IS +TV   I  +  K     R+     A    +
Sbjct: 167 KPRELKVLSLLAKGKLNKEICFELQISMDTVKKDIHQLKSKYGVFNRTQLATIATEMQL 225


>gi|325570815|ref|ZP_08146498.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156325|gb|EGC68507.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 207

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 32/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +D   T+ +  +   ++ +  +    C                     L    
Sbjct: 2   ITVVIIDDDSFVTTSLQTILESTEEIRVLGIGHCAKD---------------AIDLYETH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D  + +                 L    F          +   
Sbjct: 47  RPDVLLTDIRMPEQTGIDAAKEILAK--------FPHAILLLLTTFKDEEYIREAFSIGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     ++  I   +   +    +   + +                 +         +
Sbjct: 99  KGYLIK-QNLQAIIPSVKASYNGQVVFGNEIVET--------FTQLMKNEPSIDNQASFS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE   +  ++ GK + EIA  L +S  TV NYI+ ++ K   + R+    Y  ++
Sbjct: 150 EREFAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLGLRDRTQLAIYFYQH 205


>gi|226361838|ref|YP_002779616.1| LuxR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226240323|dbj|BAH50671.1| putative LuxR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 759

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 23/244 (9%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA---SHFLLVRWDLFQEQ 72
           D +    V+     S L A +   +       R    TE  GA       L      + +
Sbjct: 511 DRENPGLVAEAMALSALYAFITEHEDAEYIAGRFVQFTERHGAHLLKAIALYPLGAVRWR 570

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNV----LQRPTELFCPVFHTLPENIT------- 121
           K D   ++    + +R   + E      V    L        P    +            
Sbjct: 571 KGDVASATALMSEAIRLYQMFEHPGMVAVCIEGLAWSAAASRPDHAAMLLGAAKSIWQYS 630

Query: 122 ---PPAGMDNRYCSLTFDVARIRIG---LMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                     +  S+     R  +G      ++ KG  +  D    + L +       K 
Sbjct: 631 QMRLAQAAVQQVTSIVERELRQNLGNPTFEQMYAKGEALSFDESVALALGSE---TDRKP 687

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G    LT RE +    +++G T+ EIA  L IS+ TV+ ++  I+ K   ++R+ 
Sbjct: 688 KGKESGTRAGLTRREQQIAALVADGLTNREIATKLVISQRTVDAHVEHILTKLGFRSRTQ 747

Query: 236 AIAY 239
            + +
Sbjct: 748 IVRW 751


>gi|307295174|ref|ZP_07575013.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306878677|gb|EFN09896.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 207

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 32/218 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFDL 86
           +  +D   +    +  + +  G +  L                    LD  +       +
Sbjct: 7   IYVVDDDEAIRRSLSFMLKTSGFAVTLFEGGISFLKEAAGLEPGCVLLDVRMPDMDGLAV 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +                 +       +   +T      + +    F+ A +   +  
Sbjct: 67  QRELRARGIM--------LPVVIMTGHGDIDMAVTAMKAGASDFIEKPFEKAALLGCVEA 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                             +A               +   LT RE E L  + EG  +  I
Sbjct: 119 AR---------------QVAVADRGANARAGDARARLNILTDREREVLDGLVEGLPNKTI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  LGIS  TV  + A++M+K   K+ + A+  A    
Sbjct: 164 AYDLGISPRTVEIHRANLMQKLEVKSLAEALRIAFHAG 201


>gi|238751550|ref|ZP_04613041.1| Positive transcription regulator evgA [Yersinia rohdei ATCC 43380]
 gi|238710268|gb|EEQ02495.1| Positive transcription regulator evgA [Yersinia rohdei ATCC 43380]
          Length = 210

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 35/242 (14%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q +N  +  +       + +L   S+ +  +                    GA   L 
Sbjct: 3   EAQPLNAFIVDDHPLARMAIKNLLE-SEGINVIGESGD---------------GAEALLQ 46

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V         +D  + +    ++V  +   +  +   V+           + L       
Sbjct: 47  VALHQSDMVIVDVDIPTMSGIEVVEQLRKQQFSQIIIVV--------SAKNDLFYGKRSA 98

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               N + S    +A I   +                    +  +  ++    ++     
Sbjct: 99  DAGANAFISKKEGMANIIAAVHAAQNGYSYFPFS-------INGFVDSLSLEQEMLAS-- 149

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ +E++ L ++  G  + +IA  + IS  TV+ Y   +M K    + +  +A+A RN
Sbjct: 150 --LSSQEIKVLRFLLSGADNMQIAAAMFISNKTVSTYKRRLMEKLGCGSLADLLAFANRN 207

Query: 244 NI 245
            I
Sbjct: 208 KI 209


>gi|198276206|ref|ZP_03208737.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135]
 gi|198271018|gb|EDY95288.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135]
          Length = 213

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             +     ++ +  +    +   LT  E E L  ++ GK++ EIA    +S  TV  +  
Sbjct: 123 QFVCGKAKDLLREEEKEQNRMAPLTQTEKEILRAMALGKSTKEIAAERFLSIYTVATHRK 182

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I RK        AI YA+R  IV
Sbjct: 183 NIFRKLEVNNAHEAIRYALRAGIV 206


>gi|70728489|ref|YP_258238.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68342788|gb|AAY90394.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 220

 Score = 92.7 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ I+L  +       +  +  + D LA +       +    M  +              
Sbjct: 8   KLRIILADDHPIFLIGLRAVLEQDDSLAIVGEASSPSALAQLMQEI-------------- 53

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAG 125
                   D ++ ++   D +R +    +      ++         +F ++ +       
Sbjct: 54  -ECDVLVTDFMMPAEQQNDGLRLIEQLRRRHPDLPIVVVTMLNHPGLFRSILDL------ 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S       +   +         I +     + L      +   S D       +
Sbjct: 107 GVTGLLSKASLADELPTAIARARQHKPYIAQAIKQALSLAGEVGPDRLVSSD-------Q 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E +  ++ G    EIA  L  S+ TV+    S MRK    + +    Y   + +
Sbjct: 160 LSPRELEVIRLLAAGHAVGEIAAQLNRSKQTVSAQKVSAMRKLGLSSEAALYIYVQEHGL 219


>gi|292491541|ref|YP_003526980.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291580136|gb|ADE14593.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 202

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 63/237 (26%), Gaps = 40/237 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  I +  +D+     ++ L            +    S    + +             
Sbjct: 2   LPENTIYIVDDDDAMRKSLALLLKGEGF-----NVKTYASAQAFLES------------E 44

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F+L   +                 +       +P  +    
Sbjct: 45  ESPFTGCILLDVRMPGMDGFELQELLPQRGI--------HLPVIMITGHADVPMAVQAMK 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +    F    +   +     +G                +Q            +  
Sbjct: 97  SGAEDFIEKPFRAQALLDRIHKALSEG---------------NHQGQFQDPQREFLTQLE 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            LT RE +    ++EGK +  IA  L IS  TV  + A +M K   K+ +  I  A+
Sbjct: 142 SLTKRERQVFELLAEGKMNKHIAAELSISIRTVEAHRAKVMEKLKAKSLADLIRLAI 198


>gi|104782132|ref|YP_608630.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111119|emb|CAK15839.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 204

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 34/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       ++    R    A +                         L+ + + 
Sbjct: 4   RIIVADDHPLFRDAMASTVRRLLPEAEVEQAGTLQDVLR--------------LVAQGEA 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD           +  +           L R   +   +               +
Sbjct: 50  PDTLILDLRFPGLTCIARLAELRQQ--------LPRTALVVLSMVDDPEVINAVMTAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     I   L+ +     ++             Y  +     +    +  +LT 
Sbjct: 102 GFIGKSLTPEEIGAALLAVREGEVVV------------RYAPSGLLHQEGADSELEQLTH 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+ + L  I++GKT+ EIA  L IS  TV  +++S+++     TR+ A   
Sbjct: 150 RQHDVLRLIAQGKTNKEIARELDISPFTVRIHVSSLLKTLNVPTRTAAAVK 200


>gi|77460736|ref|YP_350243.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77384739|gb|ABA76252.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 208

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D     + +   +             G     L R  +     LD  +    
Sbjct: 1   MNKVLIVDDHPVIRLAVRMLMERHGYEVIAETDNGVDALQLARDQMPDIVILDIGIPKLD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  +          +         P   +    +         Y     D+  +  
Sbjct: 61  GLEVIARLTTIAM----PLKVLVLTSQSPGHFS----MRCMQSGAAGYVCKQQDLTELLS 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +           L        +                 L+GRE+  L  ++ GKT
Sbjct: 113 AIKAVLSGYSYFPNQAL--------HTVRTSLGNASEADMVDRLSGREMMVLQQLARGKT 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  TV+ Y   ++ K   ++    I  A RN +V
Sbjct: 165 NKEIADGMFLSNKTVSTYKTRLLLKLNARSLVDLIELAQRNGLV 208


>gi|17545904|ref|NP_519306.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428199|emb|CAD14887.1| probable transcription regulator protein [Ralstonia solanacearum
           GMI1000]
 gi|299067237|emb|CBJ38434.1| putative transcription regulator protein [Ralstonia solanacearum
           CMR15]
          Length = 222

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 22/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N VL        + ++HL      +  +  ++        + A  +       L++   
Sbjct: 1   MNTVLIEAHPLVRTGIAHLLRTLKGVTGVTVVEPDEGMFDAIEAHADA----GLLVIGLP 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L                D +  +       +   +    E   P        +       
Sbjct: 57  LPH-------------LDELSAIGEIMHRPHARHVVVLAESESPDIIRTLMQM-----GL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L L+   G+ I    L     L                K   +T
Sbjct: 99  SGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGTPNPSLAGDPQTDPKLLGIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A +  
Sbjct: 159 PRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQRG 215


>gi|46204847|ref|ZP_00209583.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 242

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 13/224 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
           + L    D       L   +     +  + E   GA    ++         +D  +    
Sbjct: 29  TRLVIVDDDALVRAGLRLMLDGAHGIEVVGEAADGAEVTAVLDAHPTDVVLMDLRMPRVD 88

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +  R +           +          F T  E +       + Y        RI  
Sbjct: 89  GIEATRRVRAR---PDAPAVV-----VLTTFDTDEEVVGALHAGASGYLLKDMPPERIVA 140

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +        ++  +    +    A      +           LTGRE +    +  G T
Sbjct: 141 AVRAAATGEPVLSPEIARRLMTSVADAGGQRERARAALDA---LTGRERDVAVELGRGAT 197

Query: 203 SDEIAVILGISRNTV-NNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +IA  L +S  TV   +++S++ K   + R+          +
Sbjct: 198 NADIAARLFLSVPTVXRXHVSSVLLKLGLENRTQVALLVHAAGL 241


>gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 841

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 83/250 (33%), Gaps = 17/250 (6%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +QV + L R +    +    L  + + +A    +D        + AL+  +     L
Sbjct: 602 MLAEQVRVRLQRGN---VTGAEQLQRQLEQMAASFRMDAEHPCQRAI-ALSASLSHCRLL 657

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTL 116
           L R    Q   L + +  D      R  A   +  +   L            F PV    
Sbjct: 658 LARGQAPQACILLADMVPDQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLA 717

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +       ++         +A +         +G +                A+     
Sbjct: 718 EQQHLKGLFLEAGDTLQPL-LAGMNETSSACTEEGIVHEPWAGKRA------PADGTPFN 770

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A
Sbjct: 771 SGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQA 830

Query: 237 IAYAVRNNIV 246
           ++ A+   ++
Sbjct: 831 MSRALEMKLL 840


>gi|323498768|ref|ZP_08103754.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|323316130|gb|EGA69155.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 211

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 24/216 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R+ L   +       +         + + A   +L R +      LD  +     
Sbjct: 12  DHPLFRNALFQSVHMAVSGANLLE-----ADSLDALLAVLAREEEPDLLLLDLKMPGANG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +          ++         V           +     +   + D+  +   
Sbjct: 67  MSGLIHLRAE--YPDLPIVVVSASEESSVVT------QVKSHGAFGFIPKSSDMRELVSA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +           +               + +    K   LT ++ + L  +S+G  +
Sbjct: 119 LNQVLNGEPFFPEGSITN-----------NAACNDLAEKIATLTPQQYKVLGMLSDGLLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 168 KQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|260598197|ref|YP_003210768.1| transcriptional regulator NarL [Cronobacter turicensis z3032]
 gi|260217374|emb|CBA31413.1| Nitrate/nitrite response regulator protein narL [Cronobacter
           turicensis z3032]
          Length = 231

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 71/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +   I+L  +     S V  L + +  +  +              A              
Sbjct: 20  EPATILLIDDHPMLRSGVKQLVSMAPAITVVGEAGNGEQGIEMAEA-------------- 65

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +                 +   V +   + +T    
Sbjct: 66  -LDPDLILLDLNMPGMNGLETLDKLREKALS--------GRVVVFSVSNHEEDVVTALKR 116

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
             + Y     +   +   L        ++       +           ++     G+D  
Sbjct: 117 GADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRASRATSGRDVS 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +  
Sbjct: 170 QLTPRERDILKLIAQGLPNKMIARKLDITESTVKVHVKHLLKKMKLKSRVEAAVWVHQER 229

Query: 245 I 245
           I
Sbjct: 230 I 230


>gi|254506507|ref|ZP_05118649.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219550681|gb|EED27664.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 211

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 24/216 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R+ L   +       +         + + A   +L R +      LD  +     
Sbjct: 12  DHPLFRNALFQSVHMAVSGANLLE-----ADSLDALLAVLAREEEPDLLLLDLKMPGANG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +          ++                     +     +   + D+  +   
Sbjct: 67  MSGLIHLRAE--YPDLPIV------VVSASEEPSVVTQVKSHGAFGFIPKSSDMRELVSA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +           +               + +    K   LT ++ + L  +S+G  +
Sbjct: 119 LNQVLNGEPFFPEGSITN-----------NAACNDLAQKIATLTPQQYKVLGMLSDGLLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 168 KQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|292487026|ref|YP_003529896.1| response regulator hrpY [Erwinia amylovora CFBP1430]
 gi|292900589|ref|YP_003539958.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|4581631|gb|AAD24683.1|AF083877_3 response regulator HrpY [Erwinia amylovora]
 gi|291200437|emb|CBJ47566.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291552443|emb|CBA19488.1| Response regulator hrpY [Erwinia amylovora CFBP1430]
          Length = 213

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  + +  + L  +            +                 +
Sbjct: 5   IRLMVADDHVIMREGLKQIFSLDERLVVVAEAGNGTQVMEGLR---------------VE 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      DLV  + L           +   L   ++              
Sbjct: 50  PVDLLLLDMSMPGVCGEDLVTRIHLQ--------YPKLPILILTMYSEPQIARRVLKCGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    R I    L E  + A Y                 LT
Sbjct: 102 LGYITKDNDPETLLAAIHRVARGQRFIDH-VLAEQIVFAEY-------TQAGEAMHERLT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ +  ++ G+  + IA  L IS  TV+ + A +M K    T +  + YA+ + ++
Sbjct: 154 AREMQIMLMLARGRGVNHIAEALAISNKTVSTHKARLMEKMMFTTNADIVKYAISHCLI 212


>gi|226946140|ref|YP_002801213.1| Two-component response regulator, LuxR family [Azotobacter
           vinelandii DJ]
 gi|226721067|gb|ACO80238.1| Two-component response regulator, LuxR family [Azotobacter
           vinelandii DJ]
          Length = 208

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 65/230 (28%), Gaps = 27/230 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N  +  R   V       + +  ++ +   +       +  E +      L+       
Sbjct: 1   MNSGNPIRIVLVDDHALVREGIRALLAVMPRIEVVGEAESAAEAL-----ELLDRRPADL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      +L R +     D           L   ++  +    T        Y 
Sbjct: 56  LLLDIGLKDTNGLELTRTLDRQYPD--------LKVLILSMYDNIEYVRTAIRAGARGYV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   +  +   G     +   ++                       LT RE 
Sbjct: 108 LKDASSREIVAAIEAIAAGGSFYSSEVARKLA--------------DRSSDPQNLTPREH 153

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + L  +++G  S  +A  L IS  TV  +  SI RK      +  I YA+
Sbjct: 154 QILRMLAQGLDSKAMARELDISVRTVETHRLSIRRKLNIDGSAALIKYAL 203


>gi|227539554|ref|ZP_03969603.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240619|gb|EEI90634.1| possible transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 130

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 1/126 (0%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +         I+  +  +      +  D    I    AY +N         
Sbjct: 6   ELFRQGISGFIDKHNSCQEIQRAITCIQNGEVYMGEDLRRRILERFAYSSND-AEPKDAA 64

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE++ +  I +G  S  I+  L IS NTV  +   I +K   K   G +  A
Sbjct: 65  TILGRLTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKHIFQKLNIKNSLGLLRLA 124

Query: 241 VRNNIV 246
           ++ +++
Sbjct: 125 LQYDLI 130


>gi|170736306|ref|YP_001777566.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818494|gb|ACA93076.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 215

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       + H+  R+     +                    G+    L    
Sbjct: 2   IRVILADDHAVMRDGLRHILERAGGFEIVGEASD---------------GSGTLALAERA 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    +L+R +                 L   +               
Sbjct: 47  AADVLLLDLSMPAPTGIELIRLVKRRAPS--------LRTLVLTMHAETQYAARAFKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +     A +   +  +   G  +       +                       L+
Sbjct: 99  TGYLTKDSATAELVEAVGKVAAGGVYVSPSAAESLA--------HTLRAPAQALPHERLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  I  G+T   IA  L +S  TV+ Y   I+ K      +  + Y VR+++
Sbjct: 151 AREFDVMRRIVAGQTVTRIASELALSAKTVSTYKTRILEKMGLPHEAALVRYTVRHDL 208


>gi|323358969|ref|YP_004225365.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
 gi|323275340|dbj|BAJ75485.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Microbacterium testaceum
           StLB037]
          Length = 206

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +     + V  L      +  +              AL+              
Sbjct: 2   IRVVIADDHPVVRAGVRALLDAEADIEVVGEAATPDEAVDLAAALS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  + ++      D       + + +               + T  + +       
Sbjct: 48  ------PELVLMDLQFGDRAAGAQATRRVRALAAPPYVL--ILTNYDTDGDILGAVEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +  G+         +          +A       +           L+
Sbjct: 100 SGYLLKDAPPHELLAGVRAAAAGHSALAPA-------IAGRLMARLRE------PRISLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  ++ G ++ ++A  L I+  TV +++A +  K    +R+ A++ A    I+
Sbjct: 147 AREIEVLRLVARGASNADVAERLHITDATVKSHLAHVFSKLGVTSRTAAVSTARSLGIL 205


>gi|319786382|ref|YP_004145857.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464894|gb|ADV26626.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 212

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 62/242 (25%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I+L  +     S +  L     ++  +       S    +               
Sbjct: 1   MNKLRIILADDHPVVRSGLRLLLESGGMVEVVAEAGSPASLFRALAR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D ++      D +  ++            R   +   +            
Sbjct: 48  --SEVDLLLTDFLMPGGDGVDGLDMLSRLRAHW-----PRLPVVVLTMAGNPNVLQAILG 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                    +  +  + + +  +      I                N   ++  +     
Sbjct: 101 TGVRGLLDKSDALPELSMAIAAVANGRSYIGSGVR-----------NALDAHMRNDVGGV 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L   + G T  EIA  L  S  T+++     M K          AYA  N 
Sbjct: 150 ALSRRETEVLRLFASGMTVSEIARHLNRSVKTISHQKVGAMTKLGLHNDLEIYAYARENG 209

Query: 245 IV 246
           ++
Sbjct: 210 LI 211


>gi|315605340|ref|ZP_07880383.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312909|gb|EFU60983.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 232

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 20/230 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDS 76
            R   +         LA ++ L+  +    +     E +   +   +          +D 
Sbjct: 22  IRVMVIDDQAMIRGALAGLLDLETDIEVVAQAANGVEALDELARLSVEETTPRTRTPVDV 81

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       +    A       +  ++         F          A   + +      
Sbjct: 82  AIIDVEMPRMDGITATEAIRTRFPSVRVLVVTT---FGRPGYLQRALAAGASGFMVKDAP 138

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V  +  G+  +   GR I +                    D        LT RE + L  
Sbjct: 139 VEDLVDGVRTVAAGGRTIDQSLA----------------IDALSAGASPLTARETDVLRE 182

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  G T  +IA  L +S+ TV N+++S M K   +TR+ A + A     +
Sbjct: 183 VEGGGTIADIAHALTLSQGTVRNHVSSAMLKMDARTRAEAASLARSAGWL 232


>gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52]
 gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61]
 gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52]
          Length = 500

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ A
Sbjct: 431 SDLVQPMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEA 490

Query: 237 IAYAVRNNIV 246
           I  A+R+ I+
Sbjct: 491 IVKAIRDGII 500


>gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 510

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 76/228 (33%), Gaps = 14/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + V+     +D    +   D   + T    A  + +G S   +  W    E+   S +
Sbjct: 278 RMAPVAMAIVTADRFELLDVNDGFAAMTGHAQA--DLLGKSADEIGLW---AERGAWSRI 332

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D        +       ++       PV            G D    +L     
Sbjct: 333 EGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPV---------AIHGRDCLLVALLDISD 383

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R R  + L++     +     +   L+         +      +  +LT RE +    + 
Sbjct: 384 RKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLC 443

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 444 HGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|304411512|ref|ZP_07393125.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307306712|ref|ZP_07586454.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|304350039|gb|EFM14444.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306910680|gb|EFN41109.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
          Length = 200

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 27/181 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LDS +      ++ + +  +              +F      L
Sbjct: 37  GRDFLAHCALSQAGCVILDSRMPEITGQEVQQKLLETHSP--------LGVIFLTGHGDL 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  ++        +         +   +     +                   +      
Sbjct: 89  PMALSAFRKGACDFFQKPVSGKALVQAIEKAQRE-------------------SQTTFEQ 129

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K  +LT RE + L  + +G T+ +I+  + +S  T+  + A IM+K      +  
Sbjct: 130 QSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLKVNNMAEL 189

Query: 237 I 237
           +
Sbjct: 190 V 190


>gi|302524673|ref|ZP_07277015.1| two component transcriptional regulator [Streptomyces sp. AA4]
 gi|302433568|gb|EFL05384.1| two component transcriptional regulator [Streptomyces sp. AA4]
          Length = 202

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 54/223 (24%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D +     L   +        + +   G                LD  +     
Sbjct: 4   RLLLADDQVLVRQALGTLLDLEDDFVVVAQVGRGDEVVGAALEHRPDVALLDIEMPGLDG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +A          +     +    F                +         +   
Sbjct: 64  LAAAAVLAEQ--------VPGCRVVVLTTFGRAGYLRRAMEAGALGFVVKDAPAEALGDA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++                            +  LT RE + L     G + 
Sbjct: 116 IRRVMAGERVVDPALA----------------VATLAAGESPLTARERDVLIAARGGGSV 159

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L +S  TV NY++  + KT  + R GA+  A     +
Sbjct: 160 AEIAGSLYLSVGTVRNYLSGAIAKTGARNRMGAVRVAEERGWL 202


>gi|312960102|ref|ZP_07774614.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311285596|gb|EFQ64165.1| sensory box transcriptional regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 498

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
            R R  L L+     ++     +   L+         +        +  LT RE + L  
Sbjct: 379 ERKRSELELVAAIEEVMQDASWFSQTLIEKLANAKSVNSPNLPNISYTDLTARERDVLGL 438

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 439 ICEGLADKEIASRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 487


>gi|303326587|ref|ZP_07357030.1| putative twin-arginine translocation pathway signal [Desulfovibrio
           sp. 3_1_syn3]
 gi|302864503|gb|EFL87434.1| putative twin-arginine translocation pathway signal [Desulfovibrio
           sp. 3_1_syn3]
          Length = 598

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 3/117 (2%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                      ++    +  +   +      E      +               + L+ R
Sbjct: 58  LAVALLRSEHPQLRFSYIKSRKFWLAIRMRPERT---RFPGARVVMQFRRIDPPWGLSLR 114

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ LT +S G ++ +IA  L +S  TV  ++ +I  K A K R  A+  A+ + +V
Sbjct: 115 ELDVLTLLSAGLSNPDIAHELFLSPRTVAKHVENIFIKLAVKNRVHAVRLALDHGLV 171


>gi|56461106|ref|YP_156387.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56180116|gb|AAV82838.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 210

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +   A I   +  +      + ++    + +++               K  E
Sbjct: 98  GALGFIPKSLPSAEIAEAIDTILQGDTWVPKENRERLDVISD-------EDQQLAQKVSE 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++   L ++ EG  + +IA  LGI+  TV  +I +I RK    +R+ A+  A R  +
Sbjct: 151 LTPQQYRVLHFLHEGLLNKQIAYQLGITEATVKAHITAIFRKLGVYSRTQAVLVAERLQL 210


>gi|227876197|ref|ZP_03994313.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|227843158|gb|EEJ53351.1| response regulator [Mobiluncus mulieris ATCC 35243]
          Length = 201

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +  L      L               +  +T              
Sbjct: 2   ISVVLADDQALVRGALKALLELEGDLEVAGEAGTGEELLATVAKVT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +             +   L    F              
Sbjct: 48  -PAVAVVDIEMPDLDGIGATAKIRA--------AHPQTRVLILTTFGRPGYLRRALEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  +   GR++      E                  +  +  LT
Sbjct: 99  SGFMVKDTPSQELARAVREIAAGGRVVDPKLAAE----------------SLFEGENPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L  +  G  +  IA  + +S  TV NY++S + KT   T +GA  YA     +
Sbjct: 143 PREQEVLREVEAGHHTATIAKTIYLSPGTVRNYLSSAISKTHADTSAGAARYARDQGWL 201


>gi|254503047|ref|ZP_05115198.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
 gi|222439118|gb|EEE45797.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11]
          Length = 200

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 58/209 (27%), Gaps = 33/209 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   S    +  L +  G           +             LD  +       L   
Sbjct: 7   VDDDPSTCRALRRLLDAAGYQTTTHQSATEYLAAPATATPDCLLLDIHMPELDGLSLQTK 66

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL-MLLF 148
           +  +       ++      F      +P ++         +     D   +   +   + 
Sbjct: 67  LNETG--DAPPIV------FLTGRGDVPMSVQAMRAGAADFLLKPVDEDDLFAAIQRAVT 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            + + +      E  L A                   LT RE E L  +  G  + EIA 
Sbjct: 119 ERKKDLPPSNADEEKLRAHLAL---------------LTPREDEVLDVMLTGALNKEIAA 163

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAI 237
            LGI+  TV  + A +MRK   KT     
Sbjct: 164 KLGIAERTVKMHRARLMRKLDAKTLLDLA 192


>gi|117617713|ref|YP_854588.1| positive transcription regulator EvgA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559120|gb|ABK36068.1| positive transcription regulator EvgA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 207

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 33/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       V+ L  + D    +  +D                G    L+ R   
Sbjct: 3   KILVVDDHPAIRMAVNILLQQDDHHI-VAEVDN---------------GVDAVLMARKYQ 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      ++++ +           ++          H +           N
Sbjct: 47  PDMVVLDIGIPRLDGIEVIKRLKEM-----DADIKVVILSAQATHHIMVRC---LQAGAN 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D++ ++  L+ +        RD +                          L+ 
Sbjct: 99  GFISKLDDLSLLKTVLVKIGKGQLYFPRDVI---------AGAKNAHEVDRKDLLSALSD 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I +G+T+ +IA  + +S  TV+ Y + +M+K    T    I+ A R  ++
Sbjct: 150 REMSVLLQICQGQTNKQIAESMLLSEKTVSTYKSRLMQKLNVTTMVDLISLAKRQELL 207


>gi|86740241|ref|YP_480641.1| LuxR family transcriptional regulator [Frankia sp. CcI3]
 gi|86567103|gb|ABD10912.1| transcriptional regulator, LuxR family [Frankia sp. CcI3]
          Length = 357

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPK-----GRIILRDRLWEIGLLAAYQANMFKSY 176
           P  G               R  L L + +       +        IG ++     +    
Sbjct: 228 PIQGGVPGAVPFPRMPGLPRESLRLAYRELQEVTEHVADPFLRGRIGGVSELLRGLLAEE 287

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G+   LT RE+E L  +S G ++ E A  L +S  TV  Y+ SIMRK   + R+ A
Sbjct: 288 TKTVGRLT-LTPRELEVLAQVSLGLSNVETARRLTVSPETVKAYLRSIMRKLGVRNRTAA 346

Query: 237 IAYAVRNNIV 246
           +  A +  ++
Sbjct: 347 VHAARQMGML 356


>gi|83859075|ref|ZP_00952596.1| two-component system regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852522|gb|EAP90375.1| two-component system regulatory protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 220

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 69/244 (28%), Gaps = 33/244 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  +  Q  ++L  +       +S   +++     ++           +           
Sbjct: 1   MTTQSAQGRVILADDHPLFRGALSTAVSKAAPGRALVETSTLAETLKALDE--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  ++    F  +  +  +       V+         V        
Sbjct: 52  ------GRADLVCLDLHMADSSGFIGLAELRKNHPS--APVVVISASQSPGV------AA 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +   T  + ++   L  +         +        AA  A          
Sbjct: 98  RALEFGASGFIPKTASMNQLVEALTAVLNGDVWAPDESGDPQAQEAAEAAARIAQ----- 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT  ++  L  ++ G+ + +IA  +GIS  TV  ++ +I RK     R+ A+  A
Sbjct: 153 -----LTPAQMRVLHGLAAGRLNKQIAFDMGISEATVKAHVTAIFRKLDVINRTQAVLVA 207

Query: 241 VRNN 244
              N
Sbjct: 208 QALN 211


>gi|300784159|ref|YP_003764450.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793673|gb|ADJ44048.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 215

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 25/227 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              +   P     L R++     +       ++        F +          LD  + 
Sbjct: 13  VGVIEDHPLYRYALTRVLTEAPDIELGAVADSVAR------FAVQEQPAGSVVVLDLKLR 66

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  V  +                 L        PE +         + S   D   
Sbjct: 67  GVQDAAAVLEVGQMGH----------KVLVVSAHAEQPEVLGAMQAGAKGFLSKDVDGDE 116

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +      +       I            S + H G    L+ RE + L  ++ 
Sbjct: 117 LLRAIRTIADDNAYVSPTLAGMIIQ---------DSEERHAGPKIVLSEREKQVLRLVAA 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+   ++A IL IS  TV +Y+  I  KT  + R+G +  A+R  ++
Sbjct: 168 GERDVDVAEILNISVRTVRSYLDRIRDKTGERRRAGFVRVAIREGLL 214


>gi|260772003|ref|ZP_05880920.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
 gi|260612870|gb|EEX38072.1| transcriptional regulator LuxR family [Vibrio metschnikovii CIP
           69.14]
          Length = 209

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 11/116 (9%)

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +   + D+  +   L  +                      A+M    +    K 
Sbjct: 99  HHGAFGFIPKSSDMRSLISALNQVLNGEPYFPAG-----------LADMPNQGNDLAEKI 147

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK     R+ A+  
Sbjct: 148 ATLTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLNVTNRTQAVIL 203


>gi|218506239|ref|ZP_03504117.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli Brasil 5]
          Length = 215

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 25/193 (12%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT-LPENITPPAG------------ 125
             +   D+          +   V Q       P F    P+  T   G            
Sbjct: 15  LRNISDDMHDYWFDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTAPVTRY 74

Query: 126 -----MDNRYCSLTFDVARIRIGLM-LLFPKGRIILRDRLW---EIGLLAAYQANMFKSY 176
                M                 +  + F +     R  L    +  L+A        S 
Sbjct: 75  LSERDMSTGVTVPVHMPRGDYATVTGIRFGRNNDFERHALRYIADFNLIAHVFHEAAYSL 134

Query: 177 DVHWGKDF---ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                +      LT RE ECL   +EG ++ EI+ I+  S  TV  ++ +  +K   + R
Sbjct: 135 FDRKARSVGTVRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNR 194

Query: 234 SGAIAYAVRNNIV 246
           + A+  A    ++
Sbjct: 195 TQAVVRATHYRLL 207


>gi|113867999|ref|YP_726488.1| response regulator [Ralstonia eutropha H16]
 gi|113526775|emb|CAJ93120.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 215

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +       + H+  R+ +   +            +   T              
Sbjct: 2   TRVMIADDHAVVRDGLRHILERAGVFEVVGEAADGTQVPRMVRECT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +L+R +                 L   +       +       
Sbjct: 48  -PQVLLLDLSMPGRSGLELIRLLRGEH--------PALRILVLTMHAEEQYIVRAFQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +   G  + +    ++      Q++              L+
Sbjct: 99  AGYLTKESAATELVSAIGQVARGGTYVSQSMATKLASGLKDQSDDLPHLR--------LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +  G+    IA  L +S  TV+ Y   +M K      +  + YA+RN++
Sbjct: 151 DRELEVYRRLVLGEPITAIATALCVSAKTVSTYKMRLMEKMQMPNEAMLLRYAMRNHL 208


>gi|298291984|ref|YP_003693923.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928495|gb|ADH89304.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 269

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 11/218 (5%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  LP R   +  ++        T     +TE  G    L     +      ++  S   
Sbjct: 1   MDDLPLRRASIHSLLRDWAQEEGTSL--EITEAEG-HTVLGEIDPVPHLLVYNAGYSGAT 57

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +    +    +      +            + PE I         + S     A +  
Sbjct: 58  SSEWRTRVDELRRSF--PEVPLVVISED---DSAPEVIEALKAGVRGFISARTPPAIVFQ 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISE 199
            L  +   G       L +   L+        S   H     +   LT R+      +  
Sbjct: 113 TLYFILAGGVYFPPSALLQAQALSNSADWRRMSGPAHATYRAQCSSLTERQAAVWRLLQR 172

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           G ++  IA  L +  +TV  ++  IMRK     R+ A 
Sbjct: 173 GHSNKVIARELAMCESTVKVHMRQIMRKLGATNRTQAA 210


>gi|91223298|ref|ZP_01258564.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91192111|gb|EAS78374.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 222

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A  N
Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWAKEN 214


>gi|127514434|ref|YP_001095631.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126639729|gb|ABO25372.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 198

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 61/221 (27%), Gaps = 25/221 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   ++       +    G     L++   F     D  +      +
Sbjct: 3   ILLAEDQAMVRGALAALLTLEGDFEVIQACDGDQALSLLKQQEFDLLLTDIEMPGLSGLE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L +                   +    F                +         +   + 
Sbjct: 63  LAQWCQNQAAPI--------KVIILTTFGRAGYIKRAIEAGVGGFLLKDAPSETLIQAIN 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    RII      E+ ++A              G+   L  +E   L   SEG++S E
Sbjct: 115 AVSRGKRIIDP----ELAIMA-------------VGEQDPLNDKERRALRLASEGRSSAE 157

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I+  TV NY++  + K     R  A   A +   +
Sbjct: 158 IAASLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198


>gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 213

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 16/218 (7%)

Query: 35  RMIPLDCTVSWTMRMYALTEYV------GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R++ ++    W   +             G +H          ++ +D ++   +  D   
Sbjct: 6   RVLLIEDDKDWIQIISEELNCYQDIKIIGIAHCSEEALKAINKKDVDVVLMDIFLQDNCD 65

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            + L+ +     + +    +                     Y   + +   I   +   +
Sbjct: 66  GIELTAQLLE--MKKEIKIIMLTSSDEDTIIFHAYTAGAIDYVVKS-EFHEIIDAIRAAY 122

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                I          +A      F            LT  E+  L  I +G T  EIA 
Sbjct: 123 ENRSPIRP-------TIAHKIRKEFCKLRKKEQMTCSLTKTEISILKLIDQGYTQKEIAN 175

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV N+++ I++K + K    A+  A     +
Sbjct: 176 HLVISIQTVKNHVSRILKKLSAKNSKHAVCKAREMGFL 213


>gi|220923689|ref|YP_002498991.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948296|gb|ACL58688.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 223

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 30/227 (13%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +DE     +  +          +     +     +    + +G         +   
Sbjct: 9   LVADDDELFRVALKSILR------ERLGYGDVIE-AGSLDEALDRLGTE-------EDIS 54

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               D  +        +R +     +    V+               + +       + Y
Sbjct: 55  VALFDLSMPGVESPANLRAVRECFPNTRVAVVSGSKRRR--------DILMAFDAGVHGY 106

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD----FEL 186
              +  +A +   L  +        +     +  ++A   N     D           EL
Sbjct: 107 VPKSLGLAELTKALRAIAEGTIYAPQ----LLAEISADPDNRSDLPDSGPNPKPKGTAEL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           T R+ + L  + +GK++ EIA  L +   TV  ++A++ R     TR
Sbjct: 163 TRRQRDVLALLVQGKSNKEIARALNLGEGTVKVHMAALFRTLGVSTR 209


>gi|160873591|ref|YP_001552907.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|160859113|gb|ABX47647.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|315265819|gb|ADT92672.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 200

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 27/181 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LDS +      ++ + +  +              +F      L
Sbjct: 37  GRDFLAHCALSQAGCVILDSRMPEITGQEVQQKLLETHSP--------LGVIFLTGHGDL 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  ++        +         +   +     +                   +      
Sbjct: 89  PMALSAFRKGACDFFQKPVSGKALVQAIEKAQRE-------------------SQAAFEQ 129

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K  +LT RE + L  + +G T+ +I+  + +S  T+  + A IM+K      +  
Sbjct: 130 QSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLEVNNMAEL 189

Query: 237 I 237
           +
Sbjct: 190 V 190


>gi|126176053|ref|YP_001052202.1| response regulator receiver protein [Shewanella baltica OS155]
 gi|125999258|gb|ABN63333.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
          Length = 200

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 27/181 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LDS +      ++ + +  +              +F      L
Sbjct: 37  GRDFLAHCALSQAGCVILDSRMPEITGQEVQQKLIETHSP--------LGVIFLTGHGDL 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  ++        +         +   +     +                   +      
Sbjct: 89  PMALSAFRKGACDFFQKPVSGKALVQAIEKAQRE-------------------SQTTFEQ 129

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K  +LT RE + L  + +G T+ +I+  + +S  T+  + A IM+K      +  
Sbjct: 130 QSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLEVNNMAEL 189

Query: 237 I 237
           +
Sbjct: 190 V 190


>gi|322836842|ref|YP_004210756.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9]
 gi|321165929|gb|ADW71629.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 207

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 49/190 (25%), Gaps = 24/190 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA     V   L      D  +      DL   +                 L    F   
Sbjct: 42  GAEALRAVGLHLPAVLVTDIEMPQVTGLDLAIRVKEL--------YPSTRVLILTTFARP 93

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y         +   +  +    R+I      E               
Sbjct: 94  GYLRRALDAGAVGYLLKDCPSTEMAEAVRRVAHGERVIDPGLAAE--------------- 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E L    EG+++ E+A  L ++  T+ NY++  + K     R+ A
Sbjct: 139 -SWSADAGPLTEREREVLRRAGEGESTAELARTLRLTEGTIRNYLSEAISKLGAHNRTEA 197

Query: 237 IAYAVRNNIV 246
              A     +
Sbjct: 198 ARLARAKGWL 207


>gi|217971684|ref|YP_002356435.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217496819|gb|ACK45012.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 200

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 27/181 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LDS +      ++ + +  +              +F      L
Sbjct: 37  GRDFLAHCALSQAGCVILDSRMPEITGQEVQQKLLETHSP--------LGVIFLTGHGDL 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P  ++        +         +   +     +                   +      
Sbjct: 89  PMALSAFRKGACDFFQKPVSGKALVQAIEKAQRE-------------------SQAAFEQ 129

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K  +LT RE + L  + +G T+ +I+  + +S  T+  + A IM+K      +  
Sbjct: 130 QSLQHKFDQLTEREQQVLAHVIQGMTNKQISEAMFLSLRTIEVHRAKIMKKLEVNNMAEL 189

Query: 237 I 237
           +
Sbjct: 190 V 190


>gi|92116468|ref|YP_576197.1| two component LuxR family transcriptional regulator [Nitrobacter
           hamburgensis X14]
 gi|91799362|gb|ABE61737.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 210

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 59/218 (27%), Gaps = 23/218 (10%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D  + +  ++  +                   L   +      LD  +      +L  
Sbjct: 8   VDDDASFLTAVERRLKLAGYEVEKYSSAQTLLDRLQGSERPGCVLLDVRMPGLNGLELQS 67

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +          V+      F      +P  +                  ++   +    
Sbjct: 68  RLIK--LHSILPVV------FVTGHADIPTTVRAIRAGAEDLLIKPVPSEQLIGAIERAL 119

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            +   +   R     +LA                  +LT RE +    I  G+ + ++A 
Sbjct: 120 ARHESVRSQRSRLDTVLALLA---------------KLTPRERQVFDLIVRGRINKQVAR 164

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LG +  TV  +   +M K    + +  ++ A R  ++
Sbjct: 165 ELGTTERTVKAHRHEVMEKMRVHSLAELVSIAERLGLI 202


>gi|46202045|ref|ZP_00053874.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 211

 Score = 92.3 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 29/238 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPT-RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + ++L  +       V  +    SD    +I           +                 
Sbjct: 1   MKVLLADDHALFREGVRMVLESLSDEPLDIIEASDFNQVLALVR--------------GN 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D F    LD  +     F  +  +  S        +                        
Sbjct: 47  DNFDVALLDLAMPGMDGFSAIGAVRRS-----APDIFLVVVS---ASEEPQTVRKALDSG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y   +   A +  G+  +      +         ++    A               L
Sbjct: 99  AHGYICKSAGSASMMAGIRAVLEGDTFVSP------HIIVPDSAVPAAGEINGEKLQSLL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           T R+ + L  + +GK++ EIA  L ++  TV  ++ +I+R    + R+ A   A +  
Sbjct: 153 TPRQRDVLGMLRQGKSNKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMG 210


>gi|325922619|ref|ZP_08184370.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546914|gb|EGD18017.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 222

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 63/220 (28%), Gaps = 18/220 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWT--MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           ++ L    D       L   V       +    + V A + L           +D  +  
Sbjct: 1   MTTLLIADDHPLFREALRGAVQRVMPGVLLFEADTVDALYTLADAQPDADLLLMDLNMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              F  +  + +        V+         V                 +   + D   I
Sbjct: 61  AQGFSAL--VHMRSLHPQLPVVVVSAREEPTVMRR------AIDHGAFGFIPKSADSDTI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L  +    R I  +        +               +  +LT ++   L  +  G
Sbjct: 113 GRALATVLDGERWIPAEAQNLPPTCS--------EEREVGQRLRDLTPQQFRVLQMLGAG 164

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + + +IA   G+S  T+  ++ +I+RK     R+ A+  A
Sbjct: 165 RLNKQIAYDFGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204


>gi|262402273|ref|ZP_06078834.1| tetrathionate reductase two-component response regulator [Vibrio
           sp. RC586]
 gi|262351055|gb|EEZ00188.1| tetrathionate reductase two-component response regulator [Vibrio
           sp. RC586]
          Length = 200

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 26/205 (12%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLV----RWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           +D  +S    +  L E  G             +    Q+   +V      DL       +
Sbjct: 11  VDDEISVLESLQFLLESYGYQLQAFSCGRQFLEQANWQQAGCVVLDSRMPDLCGQEVQRQ 70

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            +   +       ++      +P  +         +     D   +   +          
Sbjct: 71  LNARNS---PLRIIYLTGHGDVPMAVEALKEGACDFFQKPVDGDALVRAI---------- 117

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             D+  E+  + A Q N  +           LT RE +    + +G  + E+A  L +S 
Sbjct: 118 --DQALELSAICAEQCNARRKIGS-------LTKRERDVAELVLKGMKNQEMADELCVSL 168

Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239
            T+  + A++M+K      +  I Y
Sbjct: 169 RTIEVHRANLMKKLEVNNMAALIRY 193


>gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC
           15444]
 gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC
           15444]
          Length = 254

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 65/234 (27%), Gaps = 31/234 (13%)

Query: 44  SWTMRMYALTEYVGASHFLLVR--WDLFQEQKLDSIVSS----DWPFDLVRCMALSEKDK 97
               R+ A+    G  +  +     D       D    +     W    +          
Sbjct: 15  DLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWVDPGLAYWKDRAFAL 74

Query: 98  YYNVLQRPTELFCPV--------FHTLPENITPPAG----------MDNRYCS-LTFDVA 138
              +++       P                +                             
Sbjct: 75  RAGIIRVVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDPEAYGSYGVQGAIVAPIHSPM 134

Query: 139 RIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSY--DVHWGKDFELTGREVE 192
            +   ++       +    I   R  E+ +LA    + +K         +  E T RE++
Sbjct: 135 GVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPSADPEMVEFTRREIQ 194

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           CL W + GKT  EIA I+G+S  T+  ++ +  RK     RS  I  A     +
Sbjct: 195 CLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIRLATTLGYI 248


>gi|110678226|ref|YP_681233.1| LuxR family transcriptional regulator [Roseobacter denitrificans
           OCh 114]
 gi|109454342|gb|ABG30547.1| transcriptional regulator, LuxR family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 239

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 23/226 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H      L + +  +   V          + +G +   +      +    D  +     
Sbjct: 21  DHPLYSDALESALELVLTDVDIRK-----AQNLGDAIAAVKGGFKPELVMFDLKLPDVTG 75

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                        ++    +         F       +        +         ++  
Sbjct: 76  ISGF-----VSLRQHLPKARILVISSLASFDL---VQSLLREGAAGFLPKDTSARGLKSV 127

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +      + +D            A+ F        K  ELT ++   +  I  GK +
Sbjct: 128 LSDIIAGQTYVPKDYQQPNSCERDALADEF-----QHPKLAELTPQQQRIMRLICCGKPN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-----AYAVRNN 244
            +IA  L ++  TV  +I +++R+   + R+ A+     A A +  
Sbjct: 183 KQIAYELDLAEATVKAHITALLRRLGVRNRTQAVVLVEGALAAQRG 228


>gi|329935276|ref|ZP_08285242.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305099|gb|EGG48958.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 248

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 70/262 (26%), Gaps = 50/262 (19%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ + + + +++  ++    + +S L      +  +                    GA  
Sbjct: 1   MSDQARSLRVLVADDNPVVRAGLSALLGAHPGIRVVAEAPD---------------GAEA 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          LD+ +        +  ++           +    L            
Sbjct: 46  LTLAARHHPDVILLDARMPGTDGLTALPELS-----------RLAPVLMITYSAEPEVRT 94

Query: 121 TPPAGMDNRYCSL-TFDVARIRIGLMLLFPKGRII----------LRDRLWEIGLLAAYQ 169
                    Y     F  A +   +        +                 E     ++ 
Sbjct: 95  EAARRGARGYLVHGRFTTAELLDAVRATAEAPAVAEGPLPLPVRSSPPARHEPHEFPSHL 154

Query: 170 ANMFKSYD-------------VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                                    +DF L+ REVE +  I+ G  + +IA    IS  T
Sbjct: 155 QPRVAQSSKARFARATAFGRRPPDHRDFGLSSREVEVMDLIASGMNNRQIAATCFISEKT 214

Query: 217 VNNYIASIMRKTATKTRSGAIA 238
           V N+I  I  K  + +RS AIA
Sbjct: 215 VKNHINRIFAKLHSASRSEAIA 236


>gi|312959788|ref|ZP_07774304.1| two-component system, NarL family [Pseudomonas fluorescens WH6]
 gi|311285954|gb|EFQ64519.1| two-component system, NarL family [Pseudomonas fluorescens WH6]
          Length = 205

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 27/194 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  L     LD  +      +++                    L        
Sbjct: 35  GCDAIQMVRESLPDLIILDISIPKLDGLEVLCRFNAMNTTM--------KTLVLTAQSPT 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y     D++ +   +  +           L               + 
Sbjct: 87  LFATRCMRSGADGYVCKEGDLSELLSAIRAVLSGYNYFPSQAL---------------TT 131

Query: 177 DVHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               G++ EL      RE+  L   ++G+T+ EIA  + +S  TV+ Y   +M+K   K+
Sbjct: 132 HGADGRELELFKAVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLQAKS 191

Query: 233 RSGAIAYAVRNNIV 246
               I  A RN +V
Sbjct: 192 LVELIEMAKRNALV 205


>gi|296119033|ref|ZP_06837606.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968131|gb|EFG81383.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM
           20306]
          Length = 207

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 72/242 (29%), Gaps = 39/242 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPL---DCTVSWTMRMYALTEYVGASHFLLV 64
           V +V+  +++   S ++ L +  + L  +      +  + W  +   + E V        
Sbjct: 2   VRLVIVDDEQLIASSLATLLSLEEDLEVLQTFPSGETVLEWWRKQVTIGEAV-------- 53

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +      ++ + +           L   T    P+           A
Sbjct: 54  ----PDVLVTDLNLGGIDGIEVAQQVRALSPKT---ALVIVTSHSRPLL-----LKKALA 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T         +  +   GR I  +                         D 
Sbjct: 102 TGVQGFLPKTASAEEFAAAVRTVHGGGRYIDPELAAM----------------TITASDS 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E +    +G + +EIA ++ ++  T  NY++S M K   + R  A   A    
Sbjct: 146 PLTEREAEVVNAAGQGGSVEEIAQLVFLAPGTTRNYLSSAMTKIGAQNRFEAFLRAREKG 205

Query: 245 IV 246
            +
Sbjct: 206 WI 207


>gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
 gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive
           regulatory protein [Klebsiella sp. 1_1_55]
          Length = 921

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 82/250 (32%), Gaps = 17/250 (6%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +QV + L R +    +    L  + + +A    +D        +  L+  +     L
Sbjct: 682 MLAEQVRVRLQRGN---VTGAEQLQRQLEQMAASFRMDAEHPCQRAI-VLSASLSHCRLL 737

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTL 116
           L R    Q   L + +  D      R  A   +  +   L            F PV    
Sbjct: 738 LARGQAPQACILLADMVPDQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLA 797

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +       ++         +A +         +G +                A+     
Sbjct: 798 EQQYLKGLFLEAGDTLQPL-LAGMNETSSACTEEGIVHEPWAGKRA------PADGTPFN 850

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A
Sbjct: 851 SGSPDIHGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQA 910

Query: 237 IAYAVRNNIV 246
           ++ A+   ++
Sbjct: 911 MSRALEMKLL 920


>gi|329938783|ref|ZP_08288179.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302274|gb|EGG46166.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 212

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 58/221 (26%), Gaps = 24/221 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    + L R             +       G     + R        LD  +       
Sbjct: 16  LLADDEHLIRGALAALLALEEDLLLVAEAATGPEALAMARAHRPDVAVLDLQMPGADGVK 75

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +           L     L                     + S T    R+   + 
Sbjct: 76  VATSLRHE--------LPGCRVLIVTSHGRPGHLKRALEAGVRGFVSKTVSAQRLAEIIR 127

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R I  +                   D     D  LT RE E L + ++G    E
Sbjct: 128 TVHAGNRYIDPELAA----------------DAISTGDSPLTAREAEVLEFAADGAPVAE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    ++  TV NY++S + K   + R  A+  A  +  V
Sbjct: 172 IAERAALAEGTVRNYLSSAVSKLGVENRHAAVRLAREHGWV 212


>gi|254444769|ref|ZP_05058245.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
 gi|198259077|gb|EDY83385.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235]
          Length = 211

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 21/229 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            +   +       +L   ++  D  +    +        G                LD  
Sbjct: 1   MKVVLIEDQILFRELTESIVRTDFGLDVVGQ-----YDDGEEGLQACLDLQPDLVILDLK 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       +   +                 +      T            N   +    +
Sbjct: 56  IKKLGGLTVFNRIKDR--------TPECKVILVSAHFTPEIVKNTVERGVNGLVTKNSSI 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             ++  +  +         +        A        +   +      LT RE + L  +
Sbjct: 108 ESLKDAIGQILKGAVYYSPE--------AYKLLRQPITNKDYNDSLKMLTPRETDVLQMV 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EG +S EIA    +S  T++ + ++IMRK   +  +     AV+  +V
Sbjct: 160 GEGYSSKEIARSFNLSVRTIDAHRSNIMRKLNLRGATDMTRLAVKLKLV 208


>gi|260061809|ref|YP_003194889.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
 gi|88785942|gb|EAR17111.1| regulatory protein, LuxR:Response regulator receiver [Robiginitalea
           biformata HTCC2501]
          Length = 536

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 70/239 (29%), Gaps = 13/239 (5%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +   + +   TS  + L    D   RM  L   +   +   +L E       L     
Sbjct: 307 LRLAQGKTETATTSIQTALRETHDSYTRMELLPAAIDIWVAGESLQEANEGLKELRDGIG 366

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 L +  +       +   A          L            +LP        + 
Sbjct: 367 RVDAPLLKAQAA---YASGLVRFAEGNLQDALEHLNEALNHIH--VGSLPYLYARVRELK 421

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
            R      D       L L   +          ++  +                    LT
Sbjct: 422 GRAYLEVEDRENCT--LELSGARWVYEQLRAKPDLERIQPVLH------KTREHPTRRLT 473

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G T+   A  L IS  TV+ ++++I  K    +R  A   A+++ ++
Sbjct: 474 LRELQVLRLIASGMTNKSAARELFISERTVDRHVSNIFDKLGVSSRVAATVVAIKHKLI 532


>gi|330999811|ref|ZP_08323516.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329573814|gb|EGG55403.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 211

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 35/225 (15%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSD 81
           D  A +  +D  V        L E  G         +         +     LD  +   
Sbjct: 5   DSFAVVRIVDDDVGVRESYKFLIESDGWLVKTYCSAEDFLEHDNPTVPGCVVLDVRMPGL 64

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L   +          V+      F      +   +         +         + 
Sbjct: 65  TGLELQNRLNSFVYKI--PVI------FISAHADIEMVVKAMQNGALDFLPKPIKDESLL 116

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
           + +     +  + L     E            K           L+ RE E    I+EG 
Sbjct: 117 VAI-----EKAVRLDHTRRE----------KTKEKSEVNQNWSSLSPREQETARLIAEGL 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA  LGI+  TV  + A++  K   +    A+ +A +  ++
Sbjct: 162 LNKQIADRLGITERTVQVHRANVFSKFGVRN---AVQFAQKLMLI 203


>gi|300704444|ref|YP_003746047.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957]
 gi|299072108|emb|CBJ43440.1| putative transcription regulator protein [Ralstonia solanacearum
           CFBP2957]
          Length = 222

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 74/237 (31%), Gaps = 22/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N VL        + ++HL      +  +  ++   +    + A ++       L++   
Sbjct: 1   MNTVLIEAHPLVRTGIAHLLRTLKGVTGVTVVEPDEAMFDAIEAHSDA----GLLVIGLP 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L                D +  +       +   +    E   P        +       
Sbjct: 57  LPH-------------LDELSAIGEIMHRPHARHVVVLAESESPDIIRTLMQM-----GL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L L+   G+ I    L     L +              K   +T
Sbjct: 99  SGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDSTPNPSLAGDPQTDPKLLGIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A +  
Sbjct: 159 PRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQRG 215


>gi|114045946|ref|YP_736496.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113887388|gb|ABI41439.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 202

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 57/208 (27%), Gaps = 36/208 (17%)

Query: 39  LDCTVSWTMRMYALTEYVGAS---------HFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  +    G                         LDS +      ++ + 
Sbjct: 10  VDDDEAILDSLGFMLGQFGYQVQTFNSGRNFLAQCPLTQAGCVILDSRMPEITGQEVQQK 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  ++             +F      LP  ++        +         +   +     
Sbjct: 70  LLETQSP--------LGVIFLTGHGDLPMALSAFRKGACDFFQKPVSGKALVQAIEKAHR 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +                   +           K  +LT RE + LT + +G T+ +I+  
Sbjct: 122 E-------------------SQANFEQQSLQHKFAQLTEREQQVLTHVIQGMTNKQISEA 162

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +S  T+  + A IM+K      +  +
Sbjct: 163 MYLSLRTIEVHRAKIMKKLEVSNMAELV 190


>gi|227876252|ref|ZP_03994368.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977996|ref|ZP_06184949.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|306819527|ref|ZP_07453234.1| possible response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701206|ref|ZP_07638228.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227843213|gb|EEJ53406.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933843|gb|EEZ90424.1| two-component response regulator [Mobiluncus mulieris 28-1]
 gi|304647819|gb|EFM45137.1| possible response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613600|gb|EFN92847.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 225

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 23/242 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           ++  + +++  +D+   +++           R+  L         +  LTE         
Sbjct: 5   QVLPLKVLMVDDDKIVRTYLGASLQSD---PRIFALKTAEDGLHALQILTE--------- 52

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     +D  +      +  + +                 L    F   P  +   
Sbjct: 53  ---WTADVVLMDVDMPRMDGIETTKQIRTKH--------PETKVLIFTNFEQRPSVMRAI 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + + +    V  +   L+      RII  D    +  + A Q+N            
Sbjct: 102 QAGASGFITKDKPVDEMVDALLATRDGKRIISEDPAAALADMIAGQSNAEPPDVEFIEAL 161

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +  R  + +  + EGK++  IA  L  S  TV +Y++ I++ T  ++R+  +  A ++
Sbjct: 162 HAIPNRLKKVVPLLVEGKSNRIIAKELHTSEGTVGDYVSKILKLTNCESRTSFVVKAFKS 221

Query: 244 NI 245
            I
Sbjct: 222 KI 223


>gi|223935295|ref|ZP_03627213.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896179|gb|EEF62622.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 219

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 65/238 (27%), Gaps = 28/238 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q+  ++L  +      ++++L  +   +                         +   L+
Sbjct: 2   AQKRKVLLVDDHPLVREWLANLINQQIDMLVCGEAANAP---------------TALELL 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +L++ +                 +   +   +        
Sbjct: 47  GQTKPDIAIVDISLEGGSGIELIKNIKALYSGVI--------VIVLSMHDEMLYAERALR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y        ++   +  +      +         +   +      + D       
Sbjct: 99  AGARGYIMKREATKKVLQAIRCVLEGKLYVSEKVNEM--MTEKFVVGRSPATDSPI---A 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +L+ RE+E    +  G ++ +IA  L IS  TV  + A I  K      +  +  A+R
Sbjct: 154 QLSDRELEVFQLLGRGLSTRQIADDLHISFKTVQAFCARIKEKLKLANATELLREAIR 211


>gi|332530099|ref|ZP_08406049.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332040572|gb|EGI76948.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 224

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 68/229 (29%), Gaps = 13/229 (5%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   D  AR I     +S       +              D  +      +V 
Sbjct: 4   VLVVEDDPQTRDFFARCIQDTPGLSLVGAAATVAAAK-------AWLDSAELVLDVLLVD 56

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
              P D      +      +  +            ++ ++I         Y         
Sbjct: 57  LGLP-DGSGLDVMRHAFARFPAVDMLVISMFGDEDSVLDSIE---AGAVGYIHKDERPEN 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           I   ++ +      I       +     A  +A       +   +   L+ RE   L  I
Sbjct: 113 IAQTILQIRAGASPISPMVARRVLRRYRALAEAAPAAPPVLPVAQAPALSAREQAVLELI 172

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G +  EIA +  IS +TV  +I ++ +K A  +R  A+  A R  ++
Sbjct: 173 ARGFSYAEIARLQEISVHTVQTHIKNLYQKLAVHSRGEAVFEATRMGLL 221


>gi|306836048|ref|ZP_07469038.1| DNA-binding response regulator [Corynebacterium accolens ATCC
           49726]
 gi|304568075|gb|EFM43650.1| DNA-binding response regulator [Corynebacterium accolens ATCC
           49726]
          Length = 205

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 63/246 (25%), Gaps = 41/246 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M      + I++  +       +  L      +  +                        
Sbjct: 1   MADTSPPIRILIAEDQSLVRGALVALLATEPDIEVVAQCATGNEVAG------------- 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV     +   LD  +      D+   +  S       ++          F       
Sbjct: 48  --LVAKHNVEVALLDIEMPGKSGLDVAEEL--SGGPCKCLIV--------TTFGRGGYVK 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +        ++   +  +    R+I      E                  +
Sbjct: 96  RAIDADIAGFIVKDTPPEQLAEAIRRVKAGLRVIDPALARE----------------SLF 139

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  LT RE E    +  G TS E+A  + +S  +V N ++SIM KT    R  A   A
Sbjct: 140 TPDNPLTPREREIARLLLSGVTSSELARKVHLSPGSVRNVVSSIMTKTDANNRYEAATKA 199

Query: 241 VRNNIV 246
                +
Sbjct: 200 QTQGWI 205


>gi|296389611|ref|ZP_06879086.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
          Length = 225

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +       ++ L         +            +                 D
Sbjct: 1   MKILLVDDHFVVREGLAALLRGLFPDVEVSEAGDGEEALQAVQR---------------D 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     LD  +      +L R +           L +   LF  +   L           
Sbjct: 46  IPSLVILDLGLPGISGLELTRRLRQR--------LPQLRVLFFSLHDELALVRQALDAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +      + +     +        +  +           LT
Sbjct: 98  RGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLA-----CHSREEQGGAALR---GLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E    ++ G+   E+A  LG+S  TV+N+++ + +K    T++  +  A+ + ++
Sbjct: 150 RREFEIFRLLARGQALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRAIDSGVL 208


>gi|296158349|ref|ZP_06841180.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295891293|gb|EFG71080.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 214

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 39  LDCTVSWTMRMYALTEYVGA--------SHFLLVRWDLFQEQ-----KLDSIVSSDWPFD 85
           +D   +    +  L E  G           F+                LD  +S     +
Sbjct: 14  VDDDEAVRDSLRWLLEANGYRVQCFSSAEQFIDAWQPHTHPGQIACLILDVRMSGMSGLE 73

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +                 +F      +P  ++        +    FD A +R  + 
Sbjct: 74  LQERLIADN--------ASLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVE 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  K R                     +       +  +LT RE + L  I  G+ + +
Sbjct: 126 RMLDKARSESSSV---------------QQQRAAAERLGKLTAREHQVLERIIAGRLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  LGIS  TV  + A+IM K    T +  +  A+ N
Sbjct: 171 IADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSN 208


>gi|192361059|ref|YP_001981583.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus
           Ueda107]
 gi|190687224|gb|ACE84902.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus
           Ueda107]
          Length = 198

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 31/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                      LA ++ ++     T          G   +L+++   F     D  +   
Sbjct: 5   LAEDQSMVRGALAALLGMEEGFEITQA------EDGDRAWLMMKQQSFDILLTDIEMPGR 58

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L + +   +             +    F              + +        ++ 
Sbjct: 59  SGLELAQWVLQQKLP--------TKIIIITTFGRSGYIRRAIDMGVSGFLLKDAPSDQLI 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R+I      E+ ++A              G+   L  +E   L   +EGK
Sbjct: 111 DAIYKIMEGKRVID----GELAMMAL-------------GETDPLNDKERRALRLAAEGK 153

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EI+  L +S  TV NY++  + K     R  A   A +   +
Sbjct: 154 TTAEISNTLHLSEGTVRNYLSEAIAKLNAANRVDAARIARQKGWI 198


>gi|30316455|gb|AAP31397.1| hypothetical two-components response regulator protein [Pseudomonas
           putida]
          Length = 217

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R       P   + LAR +      +       L E +     L    ++     LD   
Sbjct: 17  RIIVADDHPLFREALARTVKRVVAGACIEEAGNLDEVM----ALADGGEVPDTLILDLRF 72

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +  +            +R T +   +           A     +   +    
Sbjct: 73  PGLVDIQCLARLRQQ--------FRRTTLIIVSMVDDPAIVEQVMATGVEGFIGKSIAAD 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   ++ +                +L  Y  +             +LT R+ E L  I+
Sbjct: 125 EIGAAILAIRNGE------------VLVRYAPSGLLPNLGGECAVEQLTHRQQEVLRLIA 172

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +GKT+ EIA  L IS  TV  +++S+++     +R+ A   
Sbjct: 173 QGKTNKEIAKALSISPFTVRIHVSSLLKLLGVSSRTAAAVK 213


>gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
 gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6]
          Length = 215

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           GL  +      + RD   ++     Y  NM  S+        +LT RE++ L  +  GK+
Sbjct: 117 GLNSVINGKSWLPRDVSAQLI---HYYRNMVCSHTSPVN--VDLTMREIQVLRCVQSGKS 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +IA  L IS  TV +++    RK + K R  A A+A   N++
Sbjct: 172 NSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWA-DQNLI 214


>gi|13471221|ref|NP_102790.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14021965|dbj|BAB48576.1| probable two-component response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 227

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 66/223 (29%), Gaps = 18/223 (8%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D  R   +   P   + L   + +      T+   ++ E +     LL     F    LD
Sbjct: 6   DRARFLIIDDHPLFREALHSAVQMAYPEVDTVEARSIAEALD----LLADAKPFDLALLD 61

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +     FD +      +    Y  L                     +     +   + 
Sbjct: 62  LSMPDVHGFDGL-----LQLRTRYPRLPVVIVSG---HEEPRIISEALSYGAAGFIPKSA 113

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             + +   +  +      +      +                    +  +LT +++  L 
Sbjct: 114 RKSDLAAAIRSVMDGAIYVPETYEGQPA------DADSIDRADMVQRLSKLTPQQLRVLQ 167

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +G  + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 168 MLRQGLLNKQIAYELQVGETTVKAHVSEILRKLNVYSRTQAVI 210


>gi|324999601|ref|ZP_08120713.1| regulatory protein LuxR [Pseudonocardia sp. P1]
          Length = 245

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 62/239 (25%), Gaps = 22/239 (9%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++   +      +  L T    LA            M                 R + 
Sbjct: 28  RVLVVDSEPVVRHGLRALLTAEPDLAPAGEAASPRDALMAAERTRPDAIIVDIEFGRDER 87

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                + +++                        +    L           +       +
Sbjct: 88  PGLDLVRALLERC---------------------RGVRILVLTGCRDRESMMRTVRLGVH 126

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFELT 187
            Y     D   I   L  +     +          L +    A    +      K   LT
Sbjct: 127 GYLRKGADTPEIVRALRSVLRGEGVFDPGTTSAGPLQVLREPAPAAPAAGADLCKTSLLT 186

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  ++ G ++ EI   L IS  TV  ++ ++  K   + R+  +  A R  IV
Sbjct: 187 DRENQVLRLLAVGLSNREIGGRLRISEATVKFHVRNLRDKLEVRRRTEIVYTAARQGIV 245


>gi|326792257|ref|YP_004310078.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
 gi|326543021|gb|ADZ84880.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium lentocellum DSM 5427]
          Length = 519

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 1/107 (0%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWI 197
            I     LL  +   +L+    E+ LL A      ++  V   K+ + LT +E E L+ +
Sbjct: 410 GIVASFYLLGREILPLLKKIDQEVYLLVAQFHKENETSKVGIKKEEYLLTPKEREILSLV 469

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +EG+++ EI   L ++  TV  ++  I+ K   K R  A++ A +  
Sbjct: 470 AEGRSNAEIGDQLYLTIGTVKWHMNHILGKLEVKNRIQAVSEARKLG 516


>gi|190889703|ref|YP_001976245.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT
           652]
 gi|190694982|gb|ACE89067.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CIAT 652]
          Length = 260

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV- 178
               A + +    L   +      + LL   G       L  +   +A            
Sbjct: 112 RLVEARIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPSALLNRLANKSAQLEPSLYQTKSV 171

Query: 179 ----------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT REV+ L  I +G  +  IA  L +S NTV  ++ +I +K 
Sbjct: 172 DVARNNALKLRRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKM 231

Query: 229 ATKTRSGAIAY 239
             + R+ A + 
Sbjct: 232 NVRNRTEAASR 242


>gi|254255320|ref|ZP_04948636.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901057|gb|EAY71807.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 252

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 40/241 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +Q  + +  +DE   + V  L     L               R+ A         F   
Sbjct: 37  AEQSIVYVVDDDESMRTAVDMLLRSVGL---------------RVEAFASAHDFLAFE-- 79

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + D+     LD  +       +   +A ++         +   +F   +  +  ++    
Sbjct: 80  KPDVPSCLILDVRLKGQSGLAVQEQIAAADL--------QLPIIFMTAYGDIAMSVKAMK 131

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + +  F    +   +     +                    +  ++      +  
Sbjct: 132 AGAMDFLAKPFREQDMLDAVAAALARDE---------------RCRSAQRALGDLRSRYA 176

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E + +++ G  + +IA  + +S  TV  +    M+K   ++ +  +  A    
Sbjct: 177 TLSAREREVMAFVASGLMNKQIAAEMNLSEITVKIHRGQAMKKMDARSLADLVRKAEALG 236

Query: 245 I 245
           I
Sbjct: 237 I 237


>gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR
          Length = 211

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 39/235 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             ++ + +  ++    + +  L  R    +              +               
Sbjct: 6   ASKIEVSIVDQNPVVRTGLETLLVRDGRFSVSGIYASGEDLLAALQT------------- 52

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   +   +      D++  +   +         R   +      +     T   
Sbjct: 53  --KPVEIVIVGWSLPDMTGGDVLTRVRKEKW--------RTRIIIYTGERSSEVLRTAIK 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + + T +   +   ++ +      +    +  +                +     
Sbjct: 103 SGAWGFVAKTEEPQVLLEAVVSVARGRLSLPYVDIDLL----------------NHDPLE 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT RE E L  ++ G T+ +IA   GISRNTV  ++ ++  K     R+ A+A 
Sbjct: 147 SLTARERELLAALANGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVAL 201


>gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 494

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 79/245 (32%), Gaps = 10/245 (4%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E ++      R+ E+R +    L     L+                 A  +  G + 
Sbjct: 250 MDMEPRRKAETALRQSEERFAKSFRLSPVPTLV-----CSAEQQLLEINEAFLQTTGYAS 304

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L+   + +   LD            R    +        ++   +    +   +  + 
Sbjct: 305 EELLGKTVEEIGFLD---KDASAALFARLEKAAAVSSID--VKVHKKGGELIDCEVAADT 359

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                       L     R R  L L+     ++     +   L+         +  V  
Sbjct: 360 VVIQDKPCYLLVLMNITERKRSELELVAAIEEVMKDASWFSRTLIEKLANVKSINAQVPS 419

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT RE + L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A
Sbjct: 420 VSFTELTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWA 479

Query: 241 VRNNI 245
               +
Sbjct: 480 RERGL 484


>gi|325109078|ref|YP_004270146.1| LuxR family transcriptional regulator [Planctomyces brasiliensis
           DSM 5305]
 gi|324969346|gb|ADY60124.1| two component transcriptional regulator, LuxR family [Planctomyces
           brasiliensis DSM 5305]
          Length = 220

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 41/242 (16%)

Query: 5   IQQVN--IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
           + Q+N  I L  +DE   +++         +AR    D  +S         E  G     
Sbjct: 1   MTQINPHIFLIEDDETVRAYIFR-------MARSFGHD--ISCYSTAEEFLESWGDERV- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      DL   +          VL     +F   +  +  ++  
Sbjct: 51  ------PGIAIVDIRLPGMHGTDLQDRLVE----MEAPVLL----IFVTGYGDILTSVET 96

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +         +   +     K                    +   +       
Sbjct: 97  IKRGAVDFLEKPIKRDSLEKAIREAADK---------------LNNMIDQLTTRRSCKEL 141

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE E     ++G  + +IA+ LGI+  TV  +   +M K    + +  + + ++
Sbjct: 142 YQKLTPREREVFELAAKGLLNKQIAMKLGIAEKTVKIHRGRVMHKLQLSSIAQLVQFYLQ 201

Query: 243 NN 244
            N
Sbjct: 202 LN 203


>gi|259419174|ref|ZP_05743091.1| transcriptional regulator AhyR/asaR family [Silicibacter sp.
           TrichCH4B]
 gi|259345396|gb|EEW57250.1| transcriptional regulator AhyR/asaR family [Silicibacter sp.
           TrichCH4B]
          Length = 229

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 55/202 (27%), Gaps = 23/202 (11%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--------- 114
              +  +    + I +      LV         +   V +R  ++  P            
Sbjct: 31  FSHEPGRFVLPEIIEARGAAEVLVDDWCGRSLYRADPVQRRAAKILNPFVWSYHAEECSV 90

Query: 115 ----------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                                +            R    L         +  D L    L
Sbjct: 91  IREDLGQGDVREVRERLLDWTLGRGMTVPLHLPGRGFATLSAFVEGRADM--DMLARFAL 148

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
            A    +              LT RE ECL+  + G ++ +IA  L  S + V  ++ + 
Sbjct: 149 QAFELQDRIS--VELRQARGPLTLREAECLSHTAAGLSAKQIAHELNRSESMVVKHLQAA 206

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K   + RS A+A A R   +
Sbjct: 207 ASKLGARNRSHAVAIATRQGWI 228


>gi|209518444|ref|ZP_03267267.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501165|gb|EEA01198.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 224

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 75/241 (31%), Gaps = 32/241 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       V +   RS  ++ +     +      +                  
Sbjct: 6   IRVILADDHPVILEGVRYELERSSTISVVGTAKNSTELMAALT---------------NS 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC--PVFHTLPENITPPAG 125
                  D ++      D +   +     + Y  ++         PV   L         
Sbjct: 51  PCDVLVSDYVMPGGSYGDGLALFSA--IHQRYPNVRLVVLSMMENPVVLRLLM-----QA 103

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
            +    S    ++ + I +   +  GR +               AN  KS          
Sbjct: 104 GNCCIFSKADPISNLTIAVHAAYANGRYLSPRMAT--------IANAIKSGTRGSTAGSP 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E + +   G +  EIA +L  S+ T++   +S M K + +  +  + Y + + +
Sbjct: 156 LTRRELEVVRFFVSGMSVTEIAELLRRSKKTISTQKSSAMLKLSIERDADLVRYGIESGL 215

Query: 246 V 246
           V
Sbjct: 216 V 216


>gi|182434667|ref|YP_001822386.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463183|dbj|BAG17703.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 199

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 49/192 (25%), Gaps = 17/192 (8%)

Query: 38  PLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            L   +        L E  G      L          +D  + +    + +  +      
Sbjct: 5   GLHNMLDSADGFTVLGEASGGKEAVELTLRTDPDVVLMDLRMPTGSGVEAIAELTRRGV- 63

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                  R   L    + T  + +         Y         +   +        ++  
Sbjct: 64  -------RARVLVLTTYDTDSDTLPAIEAGATGYLLKDALRDELYGAIRAAAAGRTVLSP 116

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                +                    D  L+ RE++ L  +  G ++ EIA  L IS  T
Sbjct: 117 AVATRLVT--------AVRNPAAPPADDPLSTRELQILEHVERGASNREIARALFISEAT 168

Query: 217 VNNYIASIMRKT 228
           V  ++  I  K 
Sbjct: 169 VKKHLTHIYDKL 180


>gi|299135525|ref|ZP_07028709.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298601649|gb|EFI57803.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 207

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 61/246 (24%), Gaps = 39/246 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   +++ ++L  +       ++ L      +  +                T       
Sbjct: 1   MSAAGKKIRVLLAEDQTMLRGALAALLELEPDICVIAQAANGREAQRLAREFT------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      +    +  SE         +   +    F       
Sbjct: 54  --------PDVVVTDIEMPEMTGLEFAAALKESES--------KSRVIILTTFARPGYLR 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y       + +   +  +    R +      E                   
Sbjct: 98  RALDAGARGYLLKERPASELAEAIRRVHAGLRAVDPALAAE----------------AWS 141

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  L+ RE   L    +G++S EIA  L +S  TV NY++  + K     R  A   A
Sbjct: 142 ADEDPLSERERRILQRAGDGRSSAEIAAELRLSEGTVRNYLSEAIAKLGAANRVDAARIA 201

Query: 241 VRNNIV 246
                +
Sbjct: 202 RARGWL 207


>gi|126731547|ref|ZP_01747353.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
 gi|126708083|gb|EBA07143.1| DNA-binding response regulator, LuxR family protein [Sagittula
           stellata E-37]
          Length = 200

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 61/238 (25%), Gaps = 39/238 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  + +     ++     SD +  +  +                            
Sbjct: 1   MRILVADDHDLVRETIAAFLDGSD-IEEVQTVATLEEAVNAAKT--------------SG 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD  +      + +  M  + + +                 +            
Sbjct: 46  TFDLVLLDYNMPGMNGLEGLARMRDANEGR--------PVAILSGSASRDVADAALKSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T     +      +         + +                          LT
Sbjct: 98  QGFIPKTLSARSLLTAARFMAAGEIYAPIEFMQ----------------KDPDDAGGMLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  I +GK + EIA  L +   TV  ++ ++ RK   + R+ A   A    +
Sbjct: 142 RRELEVLRGICDGKANKEIARDLDLQEVTVKLHVKTLSRKLEARNRTHAAMIARDRGL 199


>gi|94500934|ref|ZP_01307459.1| probable transcriptional regulator [Oceanobacter sp. RED65]
 gi|94426874|gb|EAT11857.1| probable transcriptional regulator [Oceanobacter sp. RED65]
          Length = 897

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+  L  I+EG ++ EIA  L IS +TV  +   I  K   K+R+ AI  A    I
Sbjct: 837 LSQREMAVLKLIAEGLSNQEIAERLFISLHTVKTHARRINGKLDVKSRTQAILKAKEVGI 896

Query: 246 V 246
           +
Sbjct: 897 L 897


>gi|21232778|ref|NP_638695.1| LuxR/UhpA family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767149|ref|YP_241911.1| LuxR/UhpA family transcriptional regulator [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|21114598|gb|AAM42619.1| transcriptional regulator luxR/uhpA family [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66572481|gb|AAY47891.1| transcriptional regulator luxR/uhpA family [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 212

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 1   MADLTILVADDHPLFRAAVIHVLHQTLPTAEVVEASSATTLSAMLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSTPAESIGTAVASVLDGGTWFPP-----------MTAERSEADAQLAAKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 202


>gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter
           violaceus PCC 7421]
          Length = 90

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 43/59 (72%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ L  +++G T+++IA +L IS+ TV+N++++I++KT TK R   + +A++  
Sbjct: 11  LSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWALQWG 69


>gi|86143242|ref|ZP_01061644.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830147|gb|EAQ48607.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis
           MED217]
          Length = 231

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 29/224 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDL------------FQEQKLDSIVSSDW 82
           +  +D  V +   +  L     G    L+ R                    LD  +    
Sbjct: 22  VGVVDDHVLFAQSLQGLINSFDGFEVALMARNGNDLINKLSTVNKEPSIILLDINMPIMN 81

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            F+ +  +  ++ +           +   +       I         Y         + +
Sbjct: 82  GFETIAWLNENKPNI--------KVITLSMDDDEETIIKMLKAGSKGYLLKDIHPDTLHL 133

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +  KG     +    +            S           + RE+E +      KT
Sbjct: 134 ALTEVLTKGHFYTDNVTTALL--------RGVSKKDEESLLENFSSRELEFMELACSDKT 185

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EIA  + +S  T++NY  ++ +K   K+R G + YA++N IV
Sbjct: 186 YKEIANEMCLSPKTIDNYRDTLFKKLEVKSRIGLVLYALKNKIV 229


>gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307]
 gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp.
           RCC307]
          Length = 235

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 16/188 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            L           +   +   +   LVR +          +  R          T     
Sbjct: 59  ALAHAAQAPDLVLVTEDLEQGYGISLVRELRQRWPQCICLLFLR--------RETQEVVR 110

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                       ++   +     +  +    +G       + +    A +  +  +  + 
Sbjct: 111 EALDAGAQGVIFVSSLGSGEGDFMKAIARTLEGGTYFPGPVRDAA--AFHPDDEAEGLEA 168

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +L+ RE E L  +SEG  + EIA  L IS+ TV  ++++++ K   + R+ A  
Sbjct: 169 LD----QLSSREQEVLQALSEGYCNREIAQRLFISQETVKTHVSTVISKLGVRDRTQAAV 224

Query: 239 YAVRNNIV 246
            A+R  ++
Sbjct: 225 MALRMGLL 232


>gi|90413366|ref|ZP_01221359.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
 gi|90325608|gb|EAS42077.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium profundum 3TCK]
          Length = 211

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 33/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  IV+  +     + +      +   A ++  +   +    +                 
Sbjct: 4   QYTIVIADDHPLFRNALFQSVHMAISGANLLEAESLDTLLSLLEK--------------E 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  + L  +     ++         V              
Sbjct: 50  HDVDLLLLDLKMPGANGMSGL--IQLRNQYPDLPIVVISASEEITVV------KQVRNHG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D+  +   L  +                             +    K   L
Sbjct: 102 AFGFIPKSSDMRALISALHQVLEGEPFFPEG-----------LGGEDDEVNDLAQKIASL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+    + ++
Sbjct: 151 TPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQMDL 209


>gi|264678690|ref|YP_003278597.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262209203|gb|ACY33301.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 201

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 57/226 (25%), Gaps = 29/226 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               +  L  ++  L        +      +                  L     +D  +
Sbjct: 1   MLMGLGDLLKQNIHLTLTATASSSTELVAALTK---------------SLPDIVIVDYHM 45

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D ++ +    +       +    +   +                       D +
Sbjct: 46  PDSQYGDGIKFIGYLLRQF-----EGLKVIVLTMLSNPMIVKALYKAGVKGVVFKQDDPS 100

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   + L+           L     L                +   LT RE E L +  
Sbjct: 101 EVFKAIRLVSLGNIYTPPSFLETNVSLQHQMLQE---------RFKSLTPREFEVLRYYV 151

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            G +  EIA  L  S  TV++   + MRK   K+    +A+ + + 
Sbjct: 152 RGGSLAEIAERLNRSIKTVSSQKMTAMRKLEAKSNQELMAFCLNSG 197


>gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus
            ATCC 23779]
 gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1019

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 88/243 (36%), Gaps = 18/243 (7%)

Query: 7    QVNIVLNRED-EQRTSFVSHLPTRSDLLARMIPLDC-TVSWTMRMYALTEYVGASHFLLV 64
            Q  + L + D    T +       ++   +    D   ++    + A  ++  AS  L  
Sbjct: 789  QARLQLAQGDLAAATRWAQEYQRLANPFPQFNIYDAEDLTLARILIAQGQHQQASALLEQ 848

Query: 65   RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +Q       V   +    +   A  +      VL +   L  P  +        PA
Sbjct: 849  LLPAYQAAGRLPSVIEVYLLQALNLAAQQDWSVAGRVLIQALRLAEPENYLRLFVDEGPA 908

Query: 125  GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                           +   L+ + P+ +  LR  +  + ++     +          +  
Sbjct: 909  ---------------LSNLLVQIEPQVQATLRQYVQRLLVVCELPRSTTPEQLSPIYRLI 953

Query: 185  E-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E L+ RE+  +  ++ G ++ EIA  L ++ NT+  ++ +I  K A  +R+ AIA A R 
Sbjct: 954  EPLSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRL 1013

Query: 244  NIV 246
            N++
Sbjct: 1014 NLI 1016


>gi|90579553|ref|ZP_01235362.1| putative response regulator/repressor [Vibrio angustum S14]
 gi|90439127|gb|EAS64309.1| putative response regulator/repressor [Vibrio angustum S14]
          Length = 202

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 63/219 (28%), Gaps = 27/219 (12%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +    +  +  +        L   D      LD  + +
Sbjct: 5   ALVDDHVIVRSGFAQLLALEPDMEVVGQFSSAEDA----RVGLPGLD-VTVCILDISMPN 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +                 +   V  +        +     + S       +
Sbjct: 60  ESGLTLLEDLPS-----------GIASIMLSVHDSATVVEKALSLGAKGFLSKRCSPEEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +      G  +  D    +            S + +     +LT RE +    ++ G
Sbjct: 109 VQAVRTASQGGCYLTPDIAINLV-----------SPNCNKQALGKLTKREHQISELLATG 157

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +AV LG+S  TV+ + A+ M K   K       +
Sbjct: 158 LDVKAVAVKLGLSHKTVHVHRANAMDKLDVKNNVELAKF 196


>gi|49078420|gb|AAT49783.1| PA3604 [synthetic construct]
          Length = 218

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L        R++          R+    ++             
Sbjct: 6   ILIADDHPLFRSALHQALTLGLGPDVRLVEAASIAELEARLNEKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +    +     V+    +                    +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLL--RGQYPQVPVVMISAQE------EAAVVQRSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  ++  +  +                L    +A               LT 
Sbjct: 104 GFIPKSSPLETLQQAVRAVLDGDTWWPPQDAAAEALSEEAKAASAGLAS--------LTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALL 206


>gi|78047573|ref|YP_363748.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|294624313|ref|ZP_06703016.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294665567|ref|ZP_06730848.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|78036003|emb|CAJ23694.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|292601395|gb|EFF45429.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292604665|gb|EFF48035.1| two-component system response regulator, LuxR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 221

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 56/227 (24%), Gaps = 21/227 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V         L+R++     +          + +                 +D 
Sbjct: 11  AVRVIIVDDHTLVRAGLSRLLQTFAGIDVVGEASNAQQALDM-----TSLHRPDLVLMDL 65

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D +     ++  +                                +      
Sbjct: 66  SLPGRSGLDAM-----TDVLRAAPRTHVVMMSM---HDDPVHVRDALDRGAVGFVVKDAA 117

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              + + L         +         ++A                   L+ R+ E L  
Sbjct: 118 PLELELALRAAAAGQVFLSPQI--SSKMIAPMLGREKPVGIAA------LSPRQREILRE 169

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I  G+++ EIA  LGIS  TV  + A +M     +  +  +  A ++
Sbjct: 170 IGRGQSNKEIAADLGISVKTVETHRARMMESLGCRRANDLVLLAAKH 216


>gi|110632953|ref|YP_673161.1| two component LuxR family transcriptional regulator [Mesorhizobium
           sp. BNC1]
 gi|110283937|gb|ABG61996.1| two component transcriptional regulator, LuxR family [Chelativorans
           sp. BNC1]
          Length = 228

 Score = 92.3 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 23/233 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +DE     +  +       A +I          R+                 D   
Sbjct: 10  LIADDDEFFRIALRTILKGELGFAEVIEAGSLDEAIERL--------------AERDEIG 55

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               D  +        +  +            +              + +   +   + Y
Sbjct: 56  LALFDLAMPGMKDAGSLEAVRDFR--------REMRVAVVSASTRRADMLAALSAGVHGY 107

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   L  +      +  +        +   ++   S     G +  LT R+
Sbjct: 108 VPKGLGATELAAALGHVLNGAIYVPPEIAGRDERSSQAVSSEPSSEKPGRGVE-HLTPRQ 166

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E L  + +G ++ EIA  L +   TV  ++A++ R    + R  A A  VR 
Sbjct: 167 REVLALLVDGLSNKEIARKLRLGEGTVKIHMAALFRSLGVRNRQAAAAAGVRL 219


>gi|320095726|ref|ZP_08027377.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977344|gb|EFW09036.1| two component system response regulator [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 236

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 65/230 (28%), Gaps = 12/230 (5%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGA-SHFLLVRWDLFQEQKLDS 76
            R   V         +A M+  D             E V       L R  +     +D+
Sbjct: 2   IRVMVVDDQRLTRLGIALMLRHDPDAELVAEAQDGQEAVDTLDTLSLRRGPMPDVVLMDA 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +        Y  ++         +          A   + +      
Sbjct: 62  RMPRLDGIGATRLVTA-----RYPGIRVL---VLTTYDQDDYAFGALAAGASGFLLKDAT 113

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGREVECL 194
             ++   +  +     ++      E+   AA                    LT RE +  
Sbjct: 114 ARQLCDAVHAVAHGDAVLTPRITRELIRRAAASPLFTGSSGGTEADALFSALTPRERQVA 173

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + +++G ++ EIA  L I   +   Y++ I+ KT  + R   IA A    
Sbjct: 174 SLVADGMSNAEIAGRLVIETASARRYVSRILAKTGLRDRVQ-IAVAWHRG 222


>gi|260769447|ref|ZP_05878380.1| two component transcriptional regulator LuxR family [Vibrio
           furnissii CIP 102972]
 gi|260614785|gb|EEX39971.1| two component transcriptional regulator LuxR family [Vibrio
           furnissii CIP 102972]
          Length = 159

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 17/176 (9%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      +++  +   +      + +       P   +            + +
Sbjct: 1   MVILDIGIPQLDGMEVMNRLRKLQ-----PIPKILVLTTQP---SEHFATRCLHMGASGF 52

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S + D+  I      +                 +A++                 L+ RE
Sbjct: 53  VSKSEDITNIIDASRAILSGHSYFP---------VASFHHQNAALSGQESEMLKLLSDRE 103

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L  +S+G T+ EIA  + +S  T++ Y   +M K  + +    I +A RN +V
Sbjct: 104 MMVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELIEFAKRNGVV 159


>gi|255599901|ref|XP_002537336.1| Response regulator uvrY, putative [Ricinus communis]
 gi|223516692|gb|EEF25048.1| Response regulator uvrY, putative [Ricinus communis]
          Length = 210

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +SHL   +  +A       +     R+                  
Sbjct: 2   IRILVADDHPLIRIGLSHLCALAGDMAVTFQAATSGEVLDRIRKQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    LD+ +      +L+  +           + R   L   V +             
Sbjct: 47  DFDLLVLDTEMPGITGAELIARVHAH--------VPRLPILAFSVHNEAQVVRRILYAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y S   D   +   +  +   GR I       I           K  D       +L+
Sbjct: 99  AGYLSKDCDPETLLFAIRKIASGGRFIDLKLAERIA--------FHKKKDESKRPHEQLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+  L  +  GKT +++A  L IS  TV+ + A +M K   ++ +  I Y + + +
Sbjct: 151 NRELCILRLLVAGKTVNDVASQLVISNKTVSTHKARMMEKMGFQSNAEMIRYGIDHAL 208


>gi|186476230|ref|YP_001857700.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184192689|gb|ACC70654.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 214

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 39  LDCTVSWTMRMYALTEYVGA--------SHFLLVRWDL-----FQEQKLDSIVSSDWPFD 85
           +D   +    +  L E  G           F+                LD  +S     +
Sbjct: 14  VDDDEAVRDSLRWLLEANGYRVQCFSSAEQFIDAWQPHQHPGQIACLILDVRMSGMSGLE 73

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +                 +F      +P  ++        +    FD A +R  + 
Sbjct: 74  LQERLIADNT--------LLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVE 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  K R                     +       +  +LT RE + L  I  G+ + +
Sbjct: 126 RMLDKARSESSSV---------------QQQRAAAERLGKLTAREHQVLERIIAGRLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  LGIS  TV  + A+IM K    T +  +  A+ N
Sbjct: 171 IADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSN 208


>gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
 gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8]
          Length = 499

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 71/238 (29%), Gaps = 18/238 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R  EQR +    L      L+       T        A     G     L R +    Q 
Sbjct: 263 RHSEQRFATAFRLAPVPMTLS-----STTGELLEVNDAFVATTGYDARTLARDEDALAQL 317

Query: 74  LDSIVSSDWPFDLVR-----CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                + D     +                   L        PV     ++         
Sbjct: 318 WTDPQAYDRAMASLEQGASVRSQEMALRTREGALLDCLVSAAPVS---IQDQPCVLAAIQ 374

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                      +   +  +        R  + ++  +        +      G+  +LT 
Sbjct: 375 DITERKRSEVELMEAIETVMQDTSWFSRTVIEKLAQI-----RAPQGAPQEQGELADLTP 429

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  + +G T  EIA  L +SRNTV N++A++  K     RS AI +A +  IV
Sbjct: 430 REREILGLMCQGHTDAEIAASLHLSRNTVRNHVAALYSKLDVHRRSAAIIWARQRGIV 487


>gi|209517361|ref|ZP_03266204.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209502244|gb|EEA02257.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 229

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 64/240 (26%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +         H   +   +  +     +      + +                
Sbjct: 5   LRVVVADDHPVILFGAEHALLKFPGMQVVGRARQSTELVKMLQST--------------- 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  D  +      D ++ +  L        ++         +              
Sbjct: 50  ECDVLVTDLAMPGGQYGDGLQLIDYLRRNFPNLPIV------VLTMLENAALLKRLKELG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                + + D++ I + +  +  +   +                +  +        D +L
Sbjct: 104 VTSVVNKSDDLSHIALAVQHVGRRIGYMSPSV--------KAVLDGLRVNSAGRRDDSKL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +     G T  EI+  L  S  T++    + MRK      S    YA  N ++
Sbjct: 156 SRRELEVVRLFVSGMTIKEISERLNRSIKTISTQKNAAMRKLGIDRDSELFKYAQSNGLL 215


>gi|86355727|ref|YP_467619.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86279829|gb|ABC88892.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli CFN 42]
          Length = 260

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 11/131 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---------- 169
               A + +    L   +      + LL   G       L  +    A            
Sbjct: 112 RLVEARIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPSALLNRLTNKGAQLEPSLYQTKSV 171

Query: 170 -ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            A    +  +       LT REV+ L  I +G  +  IA  L +S NTV  ++ +I +K 
Sbjct: 172 DAARNNALKLRRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKM 231

Query: 229 ATKTRSGAIAY 239
             + R+ A + 
Sbjct: 232 NVRNRTEAASR 242


>gi|15890219|ref|NP_355891.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15158405|gb|AAK88676.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 218

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 25/203 (12%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLL--VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
           +        M    E   ++   L     +      LD  +      D    +       
Sbjct: 27  EALTDLFRSMKFDAEAFDSAAAFLEKANLNRHGCLLLDVRLPGISGLDFQVQLER----- 81

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
              V  R   +F   F  +P ++         + +  F    I   +     +     R+
Sbjct: 82  ---VGNRMPIIFMTGFGDIPMSVRAMKAGAVDFLTKPFKEQDILDAVAAAMERDASRRRE 138

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                              +       +LT RE E +  +  G  + +IA  LGIS  TV
Sbjct: 139 S---------------AQNEAVTSLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTV 183

Query: 218 NNYIASIMRKTATKTRSGAIAYA 240
             +  ++MRK   ++ +  +  A
Sbjct: 184 KLHRGNVMRKMEARSVADLVRKA 206


>gi|117927574|ref|YP_872125.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648037|gb|ABK52139.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 199

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 61/217 (28%), Gaps = 25/217 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQE-----QKLDSIVSSDWPFDLVRC 89
           M+  D        +      V G     +             ++   +       +L   
Sbjct: 1   MLIADHHERLRNTLRRYVAAVPGIDRVAMAGNSAETFFRYTIERPSVVFLDIDLPELGGP 60

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               E    +           P    L E +    G    Y +    V  +   L  +  
Sbjct: 61  QTARELVSAHPDANVVMLADRPDHERLAEAMA---GGARGYLTRNVSVEELCAALAHV-- 115

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                         ++      M          D  LT RE + L  +S G ++ EI   
Sbjct: 116 --------------VVDTRMRKMANGDPPPPLIDVPLTERERQVLDGMSRGMSNYEIGRE 161

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S +T+  +   + RK     R+ A+A  +R  +V
Sbjct: 162 LFLSEDTIKTHARRLFRKLGATDRAQAVALGIRAGLV 198


>gi|309812549|ref|ZP_07706296.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308433478|gb|EFP57363.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 233

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 57/230 (24%), Gaps = 16/230 (6%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
             E   R   V   P   DL+  M+     +         T   G     +V        
Sbjct: 17  GAERAIRVMAVDDDPMVLDLIRVMLKAAPGIELV-----ATASDGDEVIGVVTAHHPDVV 71

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      D  R +                 +    F                +  
Sbjct: 72  LMDVRMERINGIDATRALTKRPNAP--------RVIILTTFDEQEYVPQAMDAGAVGFIL 123

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                  +   +         +       +     Y      +      K   L+ RE E
Sbjct: 124 KASAREALYGAIRDAHEGRSPMSPASAAHLRT--GYLDAGGAARMDARAKLARLSDRERE 181

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG-AIAYAV 241
            +  +++  ++  IA  L +S + V  ++ S   K     R G A+  A 
Sbjct: 182 IVEMVAQEMSNPAIAAELFLSESMVKQHLTSAATKLGVTGRVGIAMVLAR 231


>gi|86748488|ref|YP_484984.1| response regulator FixJ [Rhodopseudomonas palustris HaA2]
 gi|86571516|gb|ABD06073.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 205

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 73/240 (30%), Gaps = 40/240 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + N+ +  +D+     +  L   +D   R+   +  + +   +  L              
Sbjct: 4   RGNVYVIDDDQAMRDSLDFLLGSADFEVRL--FESALDFLNEVTML-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F     D  +      DL++ +             R   +       +P  +      
Sbjct: 48  -PFGCIVSDVRMPGMNGMDLLKQLKNDRT--------RLPVVIMTGHGDVPLAVEAMKLG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +    F+  R+   +     +     +       ++A               +   L
Sbjct: 99  AIDFIEKPFEDDRLIGMIETALKQAGDEAKSEAVSQDIVA---------------RIQSL 143

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + +  +  G ++  IA    IS  T+  Y A++M K    + S  +  A+R  ++
Sbjct: 144 SPRERQVMDGLIAGMSNKVIAREFDISPRTIEVYRANVMTKMQAGSLSELVRMAMRGGVI 203


>gi|28378588|ref|NP_785480.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28271424|emb|CAD64329.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 201

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ L    D L  +      ++    +  L               
Sbjct: 2   ITLYLAEDQSMLNSALTQLLELEDDLHVVGSAVDGINAWQELQEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +A S+             +    F              
Sbjct: 47  QPDVAILDIEMPGMTGLDVADRLASSQL--------ATKVIVLTTFAQRRYFERAVKANV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     I   + +  +                    +  LT
Sbjct: 99  AGYLLKDSPSDDLIDAIRAVMTGRTIYAPELVTNM----------------LSADNNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L    +G  +  IA  L +S  T  NY+++I  K     R  AI  A  N  +
Sbjct: 143 ERELAVLVEAEKGLPTKTIAANLYLSAGTTRNYLSAIFSKLGVHNRLEAIRVAKANQWL 201


>gi|186687224|ref|YP_001870367.1| two component LuxR family transcriptional regulator [Nostoc
           punctiforme PCC 73102]
 gi|186469527|gb|ACC85326.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 217

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 76/240 (31%), Gaps = 33/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  ++E     ++    +   +  +      +     +  L               
Sbjct: 2   IRLTLIEDEELIRLGITTAINQQPDMEMVGVARSGIEGINLVKEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++++ + ++ K K   V+         V        +      
Sbjct: 47  NPDVILVDIGLPDISGLEVIKEVKINSKTKI--VVLSSHSSQGTV-------QSALNAGA 97

Query: 128 NRYCSLTFDVARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           + Y     +V  I   +    +        D       ++ +     +       +D  L
Sbjct: 98  DSYILKKNNVPLILEAIKTTFYDNKSFFDPD-------ISRHNFLFQQKIKGKTYQD-HL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  E++ ++ +++G ++  IA  L I+ +TV  +I  I  K   K R  A+  A +   +
Sbjct: 150 SATEMQIISLMADGSSNKLIAERLFITESTVKGHINKIFAKLDVKDRVNALIEASKLGYI 209


>gi|296162139|ref|ZP_06844936.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295887645|gb|EFG67466.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 217

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 62/226 (27%), Gaps = 21/226 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            +         + L  ++      S            GAS   L R        L  ++ 
Sbjct: 4   VAISDAHGVVREGLHAILRCSGDFSVVGEA-----VDGASTLELARTTDAALLTLGLLMP 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                DL+  +                 L   +               + Y +       
Sbjct: 59  GIHGLDLISLIKNEN--------PALRVLVVTMRAEESFAARAFKAGASGYITKNCSATE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                  +   G  +      E     A   +              L+ RE E    I+ 
Sbjct: 111 FLDAARKVGAGGVYVSVAMADEFAHGLADMGSAL--------PHQRLSAREFEVFLLIAA 162

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G++   IA  LG+S  TV+ +   I+ K++    +  + YAV +++
Sbjct: 163 GESVAGIAEKLGLSAKTVSTHRTRILEKSSLANDAALVRYAVHHSL 208


>gi|288960730|ref|YP_003451070.1| two-component response regulator [Azospirillum sp. B510]
 gi|288913038|dbj|BAI74526.1| two-component response regulator [Azospirillum sp. B510]
          Length = 216

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 14/217 (6%)

Query: 33  LARMIPLDCTVSWTMRMYAL-------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           + R++  D        + +        T+ + A     V   L +   LD ++       
Sbjct: 1   MTRILIADDHPMVRDALRSAVLYSCQATDVMEADRLDSVMQALEERGDLDLVLLDVNMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +     L    + +                              +   +     I   L 
Sbjct: 61  MNGLGGLRTLRQRFPATPVVVVS---AHEERRWVREAMESGAAGFIPKSTPRDAIAAALR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      +      E G                  +   LT +++  L  +  GK + E
Sbjct: 118 QVLNGELYVPPQTGVEDGANDC----EDAETAEIARRISTLTAQQLRVLELLGTGKLNKE 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           IA  L I+  TV  ++++I++K    +R+ A+  A R
Sbjct: 174 IAFDLSITETTVKAHVSAILQKLKVYSRTQAVVIANR 210


>gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 215

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 73/246 (29%), Gaps = 32/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+    +V +++  +       +            +       +    +  L        
Sbjct: 1   MSAPTSRVRVLVADDHPLFREAIVRTIRERPDFELVGEASDGRAALEAIREL-------- 52

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +       +V  +   E             L    +       
Sbjct: 53  -------QPDVAVIDVKMPELDGLQVVSAVRRDEL--------GTRILLLSAYLDSAIVF 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y S   D A+I   +  +     ++  +       +AA   +         
Sbjct: 98  QAVGAGAAAYLSKEADRAQIADAIAAVARGETVLSPEAQAG---IAAEVRSRQVEDRPL- 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  ++ G+ + EIA ++ +S  TV  ++ S+  K     R+ A+A A
Sbjct: 154 -----LTPRELEVLGHVAAGRGAPEIARLIHLSPATVKGHLQSLYEKLGVSDRAAAVAEA 208

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 209 MRRGLL 214


>gi|227823525|ref|YP_002827498.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
 gi|227342527|gb|ACP26745.1| putative transcriptional regulator, LuxR family [Sinorhizobium
           fredii NGR234]
          Length = 258

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 10/132 (7%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
              G+ +    L   +      + LL   G       L  +                   
Sbjct: 114 VDEGLIHGVLPLNLHLDVCLTAIDLLMKGGEHFPAALLRRLAPRGFAGNGSAVQRPSVVE 173

Query: 182 KDFE----------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT REV+ L  I  G  +  IA  LG+S NTV  ++ +I +K   +
Sbjct: 174 AVDTERRGEGARGVLTTREVQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVR 233

Query: 232 TRSGAIAYAVRN 243
            R+ A +   R+
Sbjct: 234 NRTEAASRYFRH 245


>gi|77463145|ref|YP_352649.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides 2.4.1]
 gi|77387563|gb|ABA78748.1| two component transcriptional regulator, LuxR family family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 235

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 17/224 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +       +L     A+  +L    L     LD  +   
Sbjct: 26  IVDDHPLMCDALAMTLTHAFGLKRVRSAASLA----AAEKILREGPLPDAIVLDLNLPDV 81

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + V  +            +                    A     Y S +    ++ 
Sbjct: 82  RGIEGVMSLQKLA--------RSVPLTVISAEVDAEMVTAAMAAGAQGYVSKSLPRPQMV 133

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                ++    +   +   +         +  +           LT +++  L  I +G+
Sbjct: 134 EAFARMWTGEFVTPEEYDAD-----GAGEDGGEQMRELARSFATLTPQQMNILRLICQGR 188

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 189 PNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 232


>gi|254228708|ref|ZP_04922131.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262396570|ref|YP_003288423.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
 gi|151938655|gb|EDN57490.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262340164|gb|ACY53958.1| transcriptional regulator VpsT [Vibrio sp. Ex25]
          Length = 222

 Score = 91.9 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 172 MFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             + +     K+    LT RE + +T++S G ++ +IA  L +S NTV  ++ +I +K  
Sbjct: 141 HLRRHCKPINKNVPAILTKREKQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIE 200

Query: 230 TKTRSGAIAYAVRN 243
            K R  A+ +A  N
Sbjct: 201 VKNRVQALIWAKEN 214


>gi|288803368|ref|ZP_06408801.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334188|gb|EFC72630.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 198

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELT 187
             ++T D      G         +   + +  I  +  Y  +  K+        K+  L+
Sbjct: 77  VLTITKDPNAQLSGFHSFCIN--VPEDELVKAILKIVQYGHSGGKNLPELPQVLKNKILS 134

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  +
Sbjct: 135 NREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGYI 193


>gi|290959189|ref|YP_003490371.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648715|emb|CBG71828.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 200

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S    +  + E   G     + R        LD  +     
Sbjct: 2   RLLLADDEHLIRGALAALLSLEDDLTVIAEAASGPEALAMARAHEPDVAVLDLQMPGADG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   +           L     L               A     +   T    R+   
Sbjct: 62  VRVATSLRAE--------LPDCRVLIVTGHGRPGHLKRALAAGVRGFVPKTVSAQRLAEI 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +  +                   D     D  LT RE E L   ++G   
Sbjct: 114 IRTVHAGNRYVDPELAA----------------DAISSGDSPLTAREAEVLELAADGAPV 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S+ TV NY++S + K   + R  A+  A     V
Sbjct: 158 AEIAERAALSQGTVRNYLSSAVSKLGVENRHAAVRLARERGWV 200


>gi|302345392|ref|YP_003813745.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302150188|gb|ADK96450.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 204

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELT 187
             ++T D      G         +   + +  I  +  Y  +  K+        K+  L+
Sbjct: 83  VLTITKDPNAQLSGFHSFCIN--VPEDELVKAILKIVQYGHSGGKNLPELPQVLKNKILS 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV +  +
Sbjct: 141 NREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAVMHGYI 199


>gi|27380999|ref|NP_772528.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354165|dbj|BAC51153.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 217

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 72/220 (32%), Gaps = 20/220 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   ++ L + +  +   +       +L E +     L  + D       D  +     
Sbjct: 10  DHPLVQAALRSALSTVLPDLDIV-ACQSLDEAL---SVLSSQSDEIDLILWDLTMPGIQG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  +  ++       +    +    +   +           + Y   +  +  +   
Sbjct: 66  FAAL-FILSAQFPTVPVAIISARQDAATIRRAIAY-------GASGYIPKSLSLPEMADA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      +  +      + +A              +   L+ +++  L  I EGK +
Sbjct: 118 ITKILAGEIWMPPNVGGRGSIQSADV--------ELAARMATLSAQQLRILAMIVEGKLN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  L I+  TV  ++++I+RK    +R+ A   A R 
Sbjct: 170 KQIAGELDIAEQTVKGHVSTILRKLGVGSRTQAAVLAERL 209


>gi|89092871|ref|ZP_01165823.1| probable transcriptional regulator [Oceanospirillum sp. MED92]
 gi|89082896|gb|EAR62116.1| probable transcriptional regulator [Oceanospirillum sp. MED92]
          Length = 222

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + + +    ++   L  +      +  D +         ++       +       
Sbjct: 98  GAVGFITKSSPRDQMTDALQQILAGNVYLPSDIIRASQP-DNRRSQRKDDNQIPPELLSS 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT R++  L  +S+G+++ +IA  L I+  TV  ++++I+RK     R  A+  A
Sbjct: 157 LTRRQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLGVHNRIQAVLSA 211


>gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM
           2075]
          Length = 221

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 105 PTELFCPVFHTLPENITPPAGMDN---RYCSLTFDVARIRIGLMLLFPK--GRIILRDRL 159
              +F      + +  +   G       Y    FD A     ++ +        + R RL
Sbjct: 73  LRVVFEQGRRNVSDKWSMAHGGRRCNAVYAYPIFDEAGRVEYVLKIGFDVTDDRVSRRRL 132

Query: 160 WEI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
                GL  + +     +      ++  L+GRE+E L  ++ G T++EIA  L IS +TV
Sbjct: 133 ERYVEGLERSLRGRPALAAPPAEAEESGLSGREMEVLRLVASGMTNNEIARALCISPHTV 192

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ +I  K     R+ A   A R  +
Sbjct: 193 KTHVGNIFNKLGVNDRAMAAVTAARMGL 220


>gi|218704745|ref|YP_002412264.1| transcriptional regulator NarL [Escherichia coli UMN026]
 gi|293404764|ref|ZP_06648756.1| transcriptional regulator NarL [Escherichia coli FVEC1412]
 gi|298380407|ref|ZP_06990006.1| transcriptional regulator NarL [Escherichia coli FVEC1302]
 gi|300899752|ref|ZP_07117975.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 198-1]
 gi|218431842|emb|CAR12727.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli UMN026]
 gi|291426972|gb|EFE99998.1| transcriptional regulator NarL [Escherichia coli FVEC1412]
 gi|298277849|gb|EFI19363.1| transcriptional regulator NarL [Escherichia coli FVEC1302]
 gi|300356684|gb|EFJ72554.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 198-1]
          Length = 216

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  ++ +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPDISVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|302540485|ref|ZP_07292827.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302458103|gb|EFL21196.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 215

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 24/182 (13%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA---- 124
            +   LD  +    P +           +    L+        V  +   + +       
Sbjct: 47  PEMILLDVRIPGAMPPE-----------ELCRELRELLPNAVIVIFSACSDASVLHSCLV 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N           +   L  L     ++      ++           +      G   
Sbjct: 96  AGANGCLLKDASELDVGAALRALLAGQFVLDPRVAKQLA---------PEIIKPRTGGTV 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E LT ++ G ++ +IA  L +S  TV  Y+  +++K    +R  A+       
Sbjct: 147 RLTDREQEVLTLLAHGCSNRKIAQQLCLSETTVKGYVTDLLQKLDASSRLEAVVRGCELG 206

Query: 245 IV 246
           +V
Sbjct: 207 LV 208


>gi|323492083|ref|ZP_08097245.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546]
 gi|323313644|gb|EGA66746.1| transcriptional regulator LuxR [Vibrio brasiliensis LMG 20546]
          Length = 211

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   + D+  +   L  +           +               + +    K   
Sbjct: 101 GAFGFIPKSSDMRELVSALNQVLNGEPFFPEGSITN-----------NAACNDLAEKIAT 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|159185689|ref|NP_357289.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|159140823|gb|AAK90074.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 256

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 22/210 (10%)

Query: 50  YALTEYVG--ASHFLLVRWDLFQEQKLD------SIVS-SDWPFDLVRCMALSEKDKYYN 100
             L E +G     F +V      E   D       ++        L   ++   +     
Sbjct: 34  ECLMEALGKKFPTFAVVSIKSSAEIDDDYGNSVRLVLPYRMSGERLHTVLSEVREKHPDA 93

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
            +    E         P        + +    L   +      + LL   G       L 
Sbjct: 94  PIALVVETIDKF--EEPLKRLVGMRIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPAALLG 151

Query: 161 EIGLLAAYQ-----------ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           ++   +              AN   +      +   LT REV+ L  + +G  +  IA  
Sbjct: 152 KLTPYSPSVSGKSVQNNAVIANRADALAASRSEVAALTTREVQILDLLCKGTQNKIIADR 211

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L +S NTV  ++ +I +K   + R+ A + 
Sbjct: 212 LHLSENTVKVHVRNIYKKMNVRNRTEAASR 241


>gi|187928121|ref|YP_001898608.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725011|gb|ACD26176.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 222

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N VL        + ++HL      +  +  ++        +    +       L++   
Sbjct: 1   MNTVLIEAHPLVRTGIAHLLRTLKGVTGVTVVEPDEGMFDAIETNADA----GLLVIGLP 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L                D +  +       +   +    E   P        +       
Sbjct: 57  LPH-------------LDELSAIGEIMHRPHARHVVVLAESESPDIIRTLMQM-----GL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L L+   G+ I    L     L                K   +T
Sbjct: 99  SGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPALAGDPQTDPKLLGIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A +  
Sbjct: 159 PRQYEILVLLSRGHPVKTISRMLNISEVTAKAHISTLYRRLKVRSRTEAVYVANQRG 215


>gi|331008143|gb|EGH88200.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 150

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y +    +A +   + L+F   R I      ++ L +        
Sbjct: 22  EDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFAGQRYISPQIAQQLALKSF------- 74

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              V+      L+ RE++    I   +    I+  L +S  TVN Y   I  K +  +  
Sbjct: 75  QPQVNNSPFDLLSEREIQIALMIVGYQKVQTISDKLCLSPKTVNTYRYRIFEKLSISSDV 134

Query: 235 GAIAYAVRNNIV 246
                AVR+ +V
Sbjct: 135 ELALLAVRHGMV 146


>gi|237747660|ref|ZP_04578140.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379022|gb|EEO29113.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 206

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 19/193 (9%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A+ F  +  +  +   LD  +      ++++ +A  +         +   +F  +  T  
Sbjct: 17  AALFDFLSANSAKLIVLDMNLPGARNSEVLKKIASMK--------DQARLIFGGISFTPA 68

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMF 173
             +   A      C  T   +  R  L ++  KG  +        +  +   A +     
Sbjct: 69  AELASLAIGAVACCPPTLGESECRKILSVVSKKGVWLSSAGIPALMARLHESAVHTNPES 128

Query: 174 KS-------YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           +                  LT RE+E    +++G ++  +A  L I+  TV  +++SI  
Sbjct: 129 QKNEETDSFTAAETNPLSCLTRRELEIARLVNKGCSNKAVAKELDIAERTVKAHLSSIFE 188

Query: 227 KTATKTRSGAIAY 239
           K   K R   + +
Sbjct: 189 KLDVKDRLQLVVF 201


>gi|119476963|ref|ZP_01617244.1| Two Component Transcriptional Regulator, LuxR family protein
           [marine gamma proteobacterium HTCC2143]
 gi|119449770|gb|EAW31007.1| Two Component Transcriptional Regulator, LuxR family protein
           [marine gamma proteobacterium HTCC2143]
          Length = 222

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 77/239 (32%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +   + V +L          + +D                G S    V   
Sbjct: 1   MRVLIIDDHQLIRAAVRNLLVPEFPAVECVEVDN---------------GHSALEAVADG 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    +D  + ++  F LVR     +       L             + +         
Sbjct: 46  HFDVAIVDLFLPNETAFVLVR-----QLCDMLPDLPVLVLSATDDNAHMRQCFAL---GV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + + +    +  I   +  +    + +  + L     L+    +              LT
Sbjct: 98  SAFVNKGEAIETIVDAVNAVLSGKKYV-PEALSAGADLSLSVGDNDLPNQSLEKVMSVLT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+++ L  +++G ++  IA    +S NTV  ++++I++      R+     A +  I+
Sbjct: 157 DRQLDILRLVAKGHSNKGIARHSNLSENTVKVHVSAILKALGLSNRTQIGLLAQKIGIL 215


>gi|91785499|ref|YP_560705.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91689453|gb|ABE32653.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 229

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 62/243 (25%), Gaps = 30/243 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V +V+  +             +   L  +     +      +  +            
Sbjct: 2   QDPVRVVVADDHPVILFGAEQALLKFPGLQVVARARQSTELIKVLQTIA----------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     D  +      D +  +  L        ++         +           
Sbjct: 51  ----CDVLVTDLAMPGGQYGDGLPLIGYLRRNFPNLPIV------VLTMLENAALLKRLS 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                   + + D++ I + +  +      +       +        +  +        +
Sbjct: 101 ELGVTSVVNKSDDLSHIGLAVQHVSRNLEYMSPSVKASL--------DALRMNAGGKNDE 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +     G T  EI+  L  S  T++    + MRK   +  S    YA  N
Sbjct: 153 VMLSKRELEVVRLFVSGMTIKEISEQLNRSIKTISTQKNTAMRKLGIERDSELFQYAQSN 212

Query: 244 NIV 246
            ++
Sbjct: 213 GLL 215


>gi|302873358|ref|YP_003841991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
 gi|307688472|ref|ZP_07630918.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Clostridium cellulovorans 743B]
 gi|302576215|gb|ADL50227.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
          Length = 895

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           D  L+ RE+E L  + +G T+ EIA    +S NTV  ++ +I  K    +R+ A+  A  
Sbjct: 832 DELLSKREIEILQSLEQGATNSEIAEKSFVSINTVKTHLLNIYTKLDVHSRTRAVVKAKE 891

Query: 243 NNIV 246
             ++
Sbjct: 892 LKLI 895


>gi|229817784|ref|ZP_04448066.1| hypothetical protein BIFANG_03056 [Bifidobacterium angulatum DSM
           20098]
 gi|229785573|gb|EEP21687.1| hypothetical protein BIFANG_03056 [Bifidobacterium angulatum DSM
           20098]
          Length = 251

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 3/126 (2%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           + R   +    F      +       + +     +   +   +  ++    II       
Sbjct: 14  VARTKVIIVTTFDLDEYVMAAINAGASGFLLKDTEPETLLSSIRTVYRGNAIIAPSATKR 73

Query: 162 IG---LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +       A              +  ELT RE E L  I+ G ++ EIA  L I   TV 
Sbjct: 74  LIERMTTGAGLTAAPAQPTYTDPELDELTDREREVLIEIARGLSNQEIADKLFIGLPTVK 133

Query: 219 NYIASI 224
            ++A I
Sbjct: 134 THVAHI 139


>gi|171909864|ref|ZP_02925334.1| response regulator receiver domain protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 215

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 13/185 (7%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A     ++  +     +D  +     F+L+R +  +              L   +     
Sbjct: 25  AQAVARMQELVADMLLVDISLPDRSGFELIRDLQATH--------PEAAVLVVSMHDEEL 76

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                       Y      +      L  +   G  + R     + +  +  A       
Sbjct: 77  YAERALKAGARGYLMKNSSIEVFEQALKTVAQGGVAVSRSLSDRLLMAYSSGAPPRSETG 136

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +H      L+ RE E    + EG+++ + A ILGIS  TV+ +  +I  K   +     +
Sbjct: 137 LHM-----LSDREFEVFQMLGEGRSTFKTAEILGISPKTVDVHRRNIRSKLELEDGGDVV 191

Query: 238 AYAVR 242
            YA+R
Sbjct: 192 RYAIR 196


>gi|4416228|gb|AAD20272.1| regulator [Streptomyces arenae]
          Length = 202

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 59/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D+      L   +     +  + +   G                +D  +     
Sbjct: 3   RVLLAEDMGMVRGALVALMEMEQDLSVVAQVADGREVLSAGLAHRPDVAVIDVGLPGVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +    +           L     L                     Y       + +   
Sbjct: 63  IEAAAQLHEH--------LPECRTLMLTGTDQPGTVRRAMDARVFGYLLKDAPPSELAAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I     + +     +                 LT RE + L+  SEG  +
Sbjct: 115 IRKVADGQRVIDTRLAFTVWQRGDHP----------------LTERESDVLSLASEGAEA 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L ++  TV NY++S + K   + R  A+  A     +
Sbjct: 159 SEIAAQLHLAVGTVRNYLSSAVTKLGARNRLDAVRIARDAGWI 201


>gi|326802259|ref|YP_004320078.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326553023|gb|ADZ81408.1| two component transcriptional regulator, LuxR family
           [Sphingobacterium sp. 21]
          Length = 214

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 13/218 (5%)

Query: 36  MIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQK-----LDSIVSSDWPFDLVRC 89
           +   D        +  L +  G               QK      D ++        +  
Sbjct: 3   IAIFDDHEDSIAAIETLLKSEGSFDVVGRFYNTNACVQKVLTCDADVVLIDIASSGRMGI 62

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENI-TPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            A+ E       L+   +          E +          Y         +   +  L 
Sbjct: 63  AAIKELRSKLPYLKIVVQTAL----EDGECVFKCIKAGAVGYVLKKNARQWLISTIKDLQ 118

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +      ++      + +  +S      +D++LT RE   L ++  G +   I  
Sbjct: 119 HDGAPMAPIIARKLFNFIYRKCDERRSV--KINRDYQLTLREKTILNYLVNGLSYKMIGH 176

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            LGIS  T+ +++  + RK    + +  +A A++  IV
Sbjct: 177 ELGISYETIRSHMKKVYRKLEVSSLTEVVAKAIKQEIV 214


>gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 896

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L      +  +    +  L     +  K         + L+ RE +    +S+G T+ +I
Sbjct: 803 LHSDENQLSSEGNRLLTWL----ISELKKSHQAQNNPWHLSSREQQICPLLSQGFTNKQI 858

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  LGIS NTV  ++ ++ +K     R  A+
Sbjct: 859 STTLGISENTVKFHLKNLFQKLGVINRQQAV 889


>gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
 gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea
           F0287]
          Length = 237

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                D   + +G++ + P       + L     +            +   K F LT RE
Sbjct: 126 LLEVTDDNYLALGIIEIAPDQS----ESLPVRVQMKHCITGEIIPIKIEEEKAFALTPRE 181

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A R  I+
Sbjct: 182 KEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRKGIL 237


>gi|296157373|ref|ZP_06840208.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295892145|gb|EFG71928.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 229

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 62/243 (25%), Gaps = 30/243 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V +V+  +             +   L  +     +      +  +            
Sbjct: 2   QDPVRVVVADDHPVILFGAEQALLKFPGLQVVARARQSTELIKVLQTIA----------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     D  +      D +  +  L        ++         +           
Sbjct: 51  ----CDVLVTDLAMPGGQYGDGLPLIGYLRRNFPNLPIV------VLTMLENAALLKRLS 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                   + + D++ I + +  +      +       +        +  +        +
Sbjct: 101 ELGVTSVVNKSDDLSHIGLAVQHVSRNLEYMSPSVKASL--------DALRMNAGGKNDE 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +     G T  EI+  L  S  T++    + MRK   +  S    YA  N
Sbjct: 153 VMLSKRELEVVRLFVSGMTIKEISEQLNRSIKTISTQKNTAMRKLGIERDSELFQYAQSN 212

Query: 244 NIV 246
            ++
Sbjct: 213 GLL 215


>gi|288919615|ref|ZP_06413944.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288349013|gb|EFC83261.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 219

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 55/222 (24%), Gaps = 11/222 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     LV         +D  +      
Sbjct: 4   VLLVDDDALVRAGLRLMLGGAGDIEVVAEAGDGGQVAALVAAHRPAVVLMDIRMPGVDGV 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R            V   P  L    FHT    +         +         I   +
Sbjct: 64  RATR--------MVRAVPGAPEVLVLTTFHTDAHVLGALRAGAAGFLLKDTAPGDIVAAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGKT 202
             +     ++       +   A    +  +         +   L  RE E    +  G +
Sbjct: 116 RTVAAGDPVLSPAVTRRLIDQATAGGDGGRDDVAARARARLGMLGDREREVALAVGRGLS 175

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + +IA  L ++  TV  +++ I+ +     R           
Sbjct: 176 NAQIARELHLALPTVKTHVSRILTRLDLNNRVQIALLVHDAG 217


>gi|212633209|ref|YP_002309734.1| regulatory protein LuxR:response regulator receiver [Shewanella
           piezotolerans WP3]
 gi|212554693|gb|ACJ27147.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella
           piezotolerans WP3]
          Length = 188

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 64/214 (29%), Gaps = 31/214 (14%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           L+ ++ L      T          G     L++   F     D  +      +L      
Sbjct: 6   LSALLSLSGEFDITQAAD------GDEALALLKTSEFDLLLTDIEMPGLSGLELANWCQK 59

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           ++         +   +    F                +         +   +  +    R
Sbjct: 60  NK--------PKLKIVIITTFGRAGYIKRAIESGVGGFLLKDAPSETLIKAINQVMAGKR 111

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           II      E+ ++A              G+   L  +E + L    EGK++ EIA +L I
Sbjct: 112 IIDP----ELAIMA-------------VGESDPLNDKERKALQLAGEGKSTSEIAAMLFI 154

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV NY++  + K     R  A   A +   +
Sbjct: 155 AEGTVRNYLSEAISKLHATNRIDAARIAQQKGWL 188


>gi|116694705|ref|YP_728916.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529204|emb|CAJ95551.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 920

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 59/238 (24%), Gaps = 9/238 (3%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--- 74
           +R                +        W  R    +         L R  L    +    
Sbjct: 683 ERARLALRQGNVHAAQEAIERAADPALWRTRPGVSSFASDVEDITLGRLRLDLYARPGTP 742

Query: 75  -DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
              ++  +        +          + Q            +        G    +  +
Sbjct: 743 VREVIERELAAAAGNQLMRRALKLRILLAQACQRTGDGAHALVVMGEALRFGAAEGFVRI 802

Query: 134 TFDVA---RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTG 188
             D     R  +          +        +       +                 LT 
Sbjct: 803 FADEGDDVRRLVADACSRQSASLPAPYVERLLQACGQAGSEQAAGTGRPAPAALVEPLTP 862

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E + L  ++EG ++  +A  L +S  TV  ++ +I  K     R+ A+A A +  ++
Sbjct: 863 KEQKVLQLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGLL 920


>gi|117927404|ref|YP_871955.1| two component LuxR family transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647867|gb|ABK51969.1| two component transcriptional regulator, LuxR family [Acidothermus
           cellulolyticus 11B]
          Length = 205

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    +  + E   G       R        LD  +     
Sbjct: 7   RVLMADDQHLVRGALATLLALESDIEVVAEVGRGDDVVEAARRTAADVAVLDIEMPGLDG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           +     L    F              + +      V R+   
Sbjct: 67  LAAAAALRRE--------VPDCRVLIVTTFGRAGYLRRAMEAGVSGFLVKDAPVERLVDA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++  +         A                  LT RE E L     G T 
Sbjct: 119 VRRVAAGQRVVDPELAAATLAAGA----------------NPLTAREQEVLAAARGGATI 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV NY+++ + KT  + R  A+  A  N  +
Sbjct: 163 ADIAGRLFLSEGTVRNYLSAAIAKTGARNRIEALRVAEENGWL 205


>gi|294677195|ref|YP_003577810.1| two component LuxR family transcriptional regulator [Rhodobacter
           capsulatus SB 1003]
 gi|294476015|gb|ADE85403.1| two component transcriptional regulator, LuxR family [Rhodobacter
           capsulatus SB 1003]
          Length = 239

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 10/227 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           RT F S L    D       L  T+     +  +         L+ R +  +    D +V
Sbjct: 12  RTDFRSALI-VDDHPLFCDALAMTLQAVAGIEEIASADSLETALI-RVESAEGAPADVLV 69

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D+     L    +    +                     +     +        
Sbjct: 70  LDLNLPDVNGLDGLMRLRQAAPEMPIVVVSS---IDDPRVIRAAISAGAAGFVPK-HSRR 125

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +         +G I + +   +    +    +     D    +   LT ++   L  I 
Sbjct: 126 ELFRAAFAAIARGEIFVPESTGD----SLATGDGMSPQDEAIRRLSLLTRQQANILEQIC 181

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            GK + +IA  L I+  TV  ++ +IMRK    +R+ A+  A    I
Sbjct: 182 AGKMNKQIAYDLSIAETTVKAHVTAIMRKLGVYSRTQAVLLAREAQI 228


>gi|294054091|ref|YP_003547749.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293613424|gb|ADE53579.1| two component transcriptional regulator, LuxR family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 212

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 33/241 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            +NIV+  ++++    ++     +D L  +   +   S                  +   
Sbjct: 4   PINIVIVEDNKRFAQALNEAIELTDGLTALASFNSAESCATS--------------ISSI 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +LV         ++     +   +     +     +      
Sbjct: 50  HACDIFLLDLQLPGMSGLELVPT-----LKQHCP---KAQIIVLTQHNDYQTTLDAIRLG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAYQANMFKSYDVHWGKDFE 185
              Y      +A IR  +  +   G +I       +   L++               +  
Sbjct: 102 VAGYILKESTLAEIRDAIREVHQGGSVIDPKLSRLLLNTLSSAPFEH----------ENP 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  ++ G    ++A  LGIS  TV+ Y  +I +K      + AIA A+R  +
Sbjct: 152 LSSRERQVLDLMARGFVKKQVADELGISHATVSEYTGNIYKKLQVPNIAAAIATAIRKGL 211

Query: 246 V 246
           +
Sbjct: 212 I 212


>gi|221639002|ref|YP_002525264.1| LuxR family two component transcriptional regulator [Rhodobacter
           sphaeroides KD131]
 gi|221159783|gb|ACM00763.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
          Length = 275

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 17/224 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +       +L     A+  +L    L     LD  +   
Sbjct: 66  IVDDHPLMCDALAMTLTHAFGLKRVRSAASLA----AAEKILREGPLPDAIVLDLNLPDV 121

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + V  +            +                    A     Y S +    ++ 
Sbjct: 122 RGIEGVMSLQKLA--------RSVPLTVISAEVDAEMVTAAMAAGAQGYVSKSLPRPQMV 173

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                ++    +   +   +         +  +           LT +++  L  I +G+
Sbjct: 174 EAFGRMWTGEFVTPEEYDAD-----GAGEDGGEQMRELARSFATLTPQQMNILRLICQGR 228

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 229 PNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 272


>gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis]
 gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis]
          Length = 74

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1]
          Length = 201

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 65/201 (32%), Gaps = 28/201 (13%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
                    Y G   F  +   +      D  +     F+++         K        
Sbjct: 27  ERGFDVTLAYDGGEGFAAIFRTMPDLVLCDINMRVMSGFEVLE-----HLTKIAPRFNNM 81

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             +F          +       + Y +   D   +   +                 +  +
Sbjct: 82  PFIFLTALTDRRNELKGRQLGADDYVTKPIDFDILVSIIN--------------ARLAHV 127

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A             W K+  L  RE+E LTW++ GKTS EIA ILG+S+ TV+ +I +  
Sbjct: 128 AR---------TDVWVKEVNLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHIDNAR 178

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
            K    TR+ A   AV   ++
Sbjct: 179 IKLGVATRTQAAIKAVTGKLI 199


>gi|255308234|ref|ZP_05352405.1| salavaricin two-component response regulator [Clostridium difficile
           ATCC 43255]
          Length = 200

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    +                + +       +   L+ ++  G     +    I     
Sbjct: 78  IILTGYDLPVYKHEAKKIGIYGFLNKNISPDNLIDSLLKVYQGGTCFPSENTEVII---- 133

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                            +LT  E   L  I  GK    IA  L IS  T++N++  I  K
Sbjct: 134 ----------------EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDK 177

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +   AI  A++   +
Sbjct: 178 LDVSSSVEAITKAIQMGYI 196


>gi|146298322|ref|YP_001192913.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146152740|gb|ABQ03594.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 211

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 33/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +V+  +     S +S L +  D +  +  +         +                 + 
Sbjct: 6   KMVVVDDHPIVISGISGLLSDLDNIEIVEKMQSGALLLDYIE---------------NNE 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      DL + +       Y  V+                 +       N
Sbjct: 51  VDLVLIDIFLPVVTGIDLCKAIKQK----YSQVIVIGMSSQS----ERSLVMQFIQNGGN 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +      +  +        +   +    +                       L+ 
Sbjct: 103 GYILKSASFEEFKNCINKAIEGEIVFSDEVKTIVSQ----------PLSEDLDNIPSLSR 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE +    +S+GK + EIA  L +S  TV  +  +I++K  TK  +  I   ++NN++
Sbjct: 153 REKDIALLLSKGKQTQEIADELFLSFLTVQTHRRNILQKYKTKNVAELITLLLKNNLL 210


>gi|331695485|ref|YP_004331724.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326950174|gb|AEA23871.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 244

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 21/238 (8%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++   +      +  L      LA +                         L+     
Sbjct: 28  RILVVDGEGIVRFGLRQLFAAEPDLAVVGEAATA---------------RDALLIADRCR 72

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + S         + +          +    L           +       +
Sbjct: 73  PDLVIIDVELGSGAGAGGAERVGVEVARTLLQRRRGVRVLVLTNCRDRDVMLRTVRSGVH 132

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     + + I   +  L     +        +  +                +   LT 
Sbjct: 133 GYLRKGVETSEIVRSVRALLRGESVFDSRTTSVVVDVLRD------EDGGARPRGQMLTE 186

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + L  ++ G ++ EIAV L IS  TV  ++ ++  K   + R+  +  A R  +V
Sbjct: 187 RENQVLKLLAVGMSNREIAVRLLISEATVKFHVRNLREKLDVRRRTEIVYTATRQGMV 244


>gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
          Length = 510

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 76/228 (33%), Gaps = 14/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + V+     +D    +   D   + T    A  + +G S   +  W    E+   S +
Sbjct: 278 RMAPVAMAIVTADRFELLDVNDGFAAMTGHAQA--DLLGKSADEIGLW---AERGAWSRI 332

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D        +       ++       PV            G D    +L     
Sbjct: 333 EGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPV---------AIHGRDCLLVALLDISD 383

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R R  + L++     +     +   L+         +      +  +LT RE +    + 
Sbjct: 384 RKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLC 443

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 444 HGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|107028681|ref|YP_625776.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|105897845|gb|ABF80803.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
          Length = 212

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 38/236 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q  + +  +DE     +  L       +      +  +          +           
Sbjct: 9   QETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ----------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +S     +L   +                 +F      +P  ++    
Sbjct: 58  ---IACLILDVRMSGMSGLELQERLIADN--------AALPIIFVTGHGDVPMAVSTMKK 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    FD A +R  +  +  K               A  ++   +       +  +
Sbjct: 107 GAMDFIEKPFDEAELRKLVERMLDK---------------ARSESKSVQEQRAASERLSK 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 152 LTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVTDLLRLAL 207


>gi|300113092|ref|YP_003759667.1| LuxR family two component transcriptional regulator [Nitrosococcus
           watsonii C-113]
 gi|299539029|gb|ADJ27346.1| two component transcriptional regulator, LuxR family [Nitrosococcus
           watsonii C-113]
          Length = 225

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDL-LARMIPLDCTVSWTMRMYALTEYVGASHFLLVR----W 66
           +NR ++   S   H  ++ +   AR+  ++        +  +    G             
Sbjct: 1   MNRMNQCFPSAHDHSGSQHNFEAARVFIVNSDEKAQSSLCRMIASAGWRTQSYFSAESFL 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D F       ++  +   ++             ++               PE +    G 
Sbjct: 61  DKFDPTHPGCLLLDNHVSEMGGLSLQQRLRDRNSLTPILFTSSQGTV---PEAVEAIHGG 117

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              + +       +  G+                E    + Y     K  +    +   L
Sbjct: 118 AVNFFTWPLQKPLLIKGI---------------RESIEKSQYLREDKKKREEITIRMMRL 162

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           T RE E +  + +G+ +  IA  L IS  TV  +   +MRK   +T++  I  A
Sbjct: 163 TPREREVMALVLKGRPNKLIASDLDISIKTVEIHRGQVMRKLQVRTQADLIHLA 216


>gi|296101085|ref|YP_003611231.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055544|gb|ADF60282.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 201

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 40/234 (17%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D+     V+ L   +DL A +           R                  DL 
Sbjct: 1   MYVVDDDDAVRQSVTGLLESADLNA-IGFSSAEAFLQHRFE----------------DLP 43

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  + +   F++   +  S         +    +F     T+P ++    G    
Sbjct: 44  SCVILDMQMPTISGFEVADALRDSG--------REIPIIFLTGHGTIPMSVRAIKGGAYE 95

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +   + A +   +                    LA   A   K +     +   LT R
Sbjct: 96  FLTKPVESAALIDAIESALR---------------LAENNAVRNKEHYALKQRHMSLTPR 140

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E E L     G  + +IA  LG+S  TV  +   +M K   ++ +  +    R 
Sbjct: 141 EHEVLQLAISGLLNKQIAAELGVSEITVKVHRRRVMEKMQVRSVAELVRVVERL 194


>gi|217968913|ref|YP_002354147.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217506240|gb|ACK53251.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 211

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  + +   +    L      L  +       +    +                  
Sbjct: 2   LRIAIVDDHQIVRAGFRELLADELGLEIVFEAASGEAALESLREQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++R +            +    L    F      +       
Sbjct: 47  PVDVLLLDLSLPGQSGVDVLRAVRQR--------YEGMRVLMLSGFPEERYALAMIRNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +    R +       +                      +L+
Sbjct: 99  DGYLCKDCSREALLQAIRTVAQGRRYVSARTAELLA--------DELGGGGGGAPHEKLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    ++ G++  +IA +L +S  T++ Y   ++ K    + +    YA+R+ ++
Sbjct: 151 DRELQVFLRLARGESVSDIAAVLNLSVKTISTYRTRLLEKLGVASNAELATYALRHGLI 209


>gi|160896100|ref|YP_001561682.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160361684|gb|ABX33297.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 209

 Score = 91.9 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++VL  +       +      +  ++             ++   T              
Sbjct: 2   IHVVLCDDHAVLRRGIRDTLAEAVDISVTAEAGSYAELREQLRTAT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      + +  +  +       +++       P        +       
Sbjct: 48  -CDVLLLDINMPGRSGLEALASVRETH-----PLIKVLMVSMYP---EDQYALRCLKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +   D   +   +  +    + +  +    +            +          L+
Sbjct: 99  QGYANKAGDPVLLIEAVRTVATGRKYLTSEVAQMLA--------DSLAQPAPQVPHESLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L  I+ G+   +IA  L +S  TV+ Y A ++ K    + +   AYA+ N ++
Sbjct: 151 ERELQTLIKIAAGQRLTDIATELMLSPKTVSVYRARVLEKLQMSSNAELTAYAIHNQLI 209


>gi|289667797|ref|ZP_06488872.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 212

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 1   MADLTILVADDHPLFRAAVIHVLQQTLPHANVVEASSAATLSAMLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  -HPQAELVLLDLAMPGACGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSTPAESIGTAVASVLEGGTWFPP-----------MTAERSEADAQLASKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 202


>gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184]
 gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 510

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 76/228 (33%), Gaps = 14/228 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + V+     +D    +   D   + T    A  + +G S   +  W    E+   S +
Sbjct: 278 RMAPVAMAIVTADRFELLDVNDGFAAMTGHAQA--DLLGKSADEIGLW---AERGAWSRI 332

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D        +       ++       PV            G D    +L     
Sbjct: 333 EGRLAGDGHVRNVDVQIRTRDGDVRDCVVSADPV---------AIHGRDCLLVALLDISD 383

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R R  + L++     +     +   L+         +      +  +LT RE +    + 
Sbjct: 384 RKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRANAPDAGAQLSDLTARERDVFDLLC 443

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G    EIA  LG++ NTV N++A+I  K    +R  AI +A    IV
Sbjct: 444 HGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERGIV 491


>gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 204

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L    + +  +  +         + A                
Sbjct: 5   IKVLLAEDQSMVREALAALLGLEEDIEVVAQVARGDEVKDAVRA---------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +            A ++  +    ++         F              
Sbjct: 49  ----HAVDVALLDIEMPGATGIEAAAQVHREMPDVKLV---VLTTFGRPGYLRAAMEAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A++   +  +    R+I                               LT
Sbjct: 102 DAFLVKDAPAAQLAQAVRKVLAGERVIDPTLAAA----------------ALAEGANPLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K   + R+ A+  A     +
Sbjct: 146 DREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIAREKGWL 204


>gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter
           thermophilus DSM 20745]
          Length = 214

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 2/164 (1%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE--NITPPAGMDNRYCSLTFDVARIRI 142
           +         + + + V     +L  P    +     +                      
Sbjct: 40  EASSAYEALAQIEQHQVRLVLLDLHLPGVTGVQLTTVLKRRRNAPRVVMLARSADEGNVR 99

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                     I  R    E+           ++          L+ REVE L  +  G +
Sbjct: 100 AARTAGADAYITKRSTNKELLATLDRVCAQPRAAPARDAAALPLSTREVEILDCMVRGLS 159

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  L IS  TV N+++ +  K   + R  A+ +A+++  V
Sbjct: 160 NREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQHGWV 203


>gi|91975822|ref|YP_568481.1| response regulator FixJ [Rhodopseudomonas palustris BisB5]
 gi|91682278|gb|ABE38580.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB5]
          Length = 205

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 40/237 (16%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D+     +  L T ++   R+            + A+ +              F
Sbjct: 7   VYVIDDDQAMRESIDFLLTSANYEVRLFESAPAF-----LDAMADV------------EF 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D  +      DL++ +  S          R   +       +P  +         
Sbjct: 50  GCVLSDVRMPGIDGLDLLKRLKASRS--------RLPVVIMTGHGDVPLAVEAMKLGAID 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    FD  R+   +                    LA  +A           +   L+ R
Sbjct: 102 FIEKPFDDDRLIGMIETSLK---------------LAGEEAKSEAVSQDIVARIQSLSPR 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ +  +  G ++  IA    IS  T+  Y A++M K    + S  +  A+R  ++
Sbjct: 147 ELQVMEGLIAGMSNKAIAREFDISPRTIEVYRANVMTKMQASSLSELVRMAMRGGVI 203


>gi|260867629|ref|YP_003234031.1| fused DNA-binding response regulator NarL and sensory histidine
           kinase NarX in two-component regulatory system
           [Escherichia coli O111:H- str. 11128]
 gi|257763985|dbj|BAI35480.1| fused DNA-binding response regulator NarL and sensory histidine
           kinase NarX in two-component regulatory system
           [Escherichia coli O111:H- str. 11128]
 gi|323179262|gb|EFZ64832.1| response regulator [Escherichia coli 1180]
          Length = 812

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 600 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 644

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 645 ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 696

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 697 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 749

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 750 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 809

Query: 244 NI 245
            I
Sbjct: 810 RI 811


>gi|302547713|ref|ZP_07300055.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302465331|gb|EFL28424.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           himastatinicus ATCC 53653]
          Length = 218

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 58/232 (25%), Gaps = 23/232 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D    + +  +   +  +  +                    GA    LV   
Sbjct: 4   IRVLLVDDDAIVRAGLRLMLGGAPDIEIVAEAAD---------------GAEVPALVDRH 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         R +                 L    FHT    +       
Sbjct: 49  GPDLVLMDIRMPGVDGLTATRTLRARPGAPE--------VLVLTTFHTDAHVLRALRAGA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         I   +  +     ++       +                   +   L 
Sbjct: 101 AGFLLKDTPPQDIVTAIRTVATGDPVLSPAVTRRLIEQVTGDGGQGDRAATARARLALLG 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE +    +  G+++ EIA  L ++  TV  +++ I+ +     R      
Sbjct: 161 ERERDVARAVGHGRSNAEIARELHLALPTVKAHVSRILTRLDLNNRVQIALL 212


>gi|184201824|ref|YP_001856031.1| NarL family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183582054|dbj|BAG30525.1| putative NarL family two-component response regulator [Kocuria
           rhizophila DC2201]
          Length = 299

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 66/240 (27%), Gaps = 20/240 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL--VRWDLFQEQKLDSIVSSD 81
             +      + RM  +  T     R       +  + F L     +  Q      ++   
Sbjct: 60  PDVILMDVRMPRMDGIAATREILRR-RPEVRIIVLTTFDLDEYALEGIQAGASGFLLKDA 118

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFC----------PVFHTLPENITPPAGMDNRYC 131
            P +L+  +      +   V+   T              P     P   +  +   +   
Sbjct: 119 RPEELLDAIRT--VARGDAVIAPSTTRRLLSHLVSGGLQPADRPAPGGASQASRAGSGGT 176

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFEL 186
           +   +   +             +              +A                +   L
Sbjct: 177 TPPEEPRWLGAAPAPGADPDAPLGGAPFGGAPGTPQARAGGSAGGAPARDPWQDPRLGTL 236

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E    I EG ++ EI   L +S  TV  +++ I+ K   + R  A+  A    +V
Sbjct: 237 TAREREVFELIGEGCSNGEIMQRLFLSEPTVKTHVSHILSKLDARDRVQAVVIAYETGVV 296


>gi|37528381|ref|NP_931726.1| hypothetical protein plu4562 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787819|emb|CAE16934.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 238

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 15/217 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++L+ +           R+     Y+G   + + + + +       ++ ++   +     
Sbjct: 7   EILSEIKKSKTMPELEKRLLNAINYLGFEFYSIYQEEKYPFTTKKYVLITNLNIETASNY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----------NRYCSLTFDVARI 140
                     ++        P       +      ++          N            
Sbjct: 67  NQDNNHDSDQLMNGDYTFSIPSVCNDKISKNTDFTIEKSNSNKNEVKNSLSIKIKGYHGE 126

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLT 195
           R    +   +G I   + L + G+L        K+++    K        L+ REVE + 
Sbjct: 127 RSIFSVARKEGTISHNEILNKAGVLGILANECIKTFNNLKNKKDKIIIPTLSTREVEVIR 186

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           W  EGKTS EIA IL IS  TVN +I ++M K     
Sbjct: 187 WTCEGKTSAEIADILDISTRTVNFHINNVMEKLVVPN 223


>gi|302528815|ref|ZP_07281157.1| two component transcriptional regulator [Streptomyces sp. AA4]
 gi|302437710|gb|EFL09526.1| two component transcriptional regulator [Streptomyces sp. AA4]
          Length = 201

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + +   G       +        LD  +     
Sbjct: 3   RVLLADDQAMVRGALATVLGLEADIEVVAQVGSGDEVVAAAKETAPDVALLDVQMPGMDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     + C  F          A     +        ++   
Sbjct: 63  LTAAAELKT--------ALPACRVIICTTFGRPGYLARAMAAGAAGFVVKDAPPEQLVEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++      E                        LT RE + L+   +G T 
Sbjct: 115 VRRVHSGLRVVDPALAAE----------------SLATGTSPLTARERDVLSAAKDGSTV 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV N+++S + KT  +TR+ A+  +     +
Sbjct: 159 ADIAKSLFLSDGTVRNHLSSAIGKTGARTRAEAVRLSEERGWL 201


>gi|229589665|ref|YP_002871784.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361531|emb|CAY48407.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 504

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 1/109 (0%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTW 196
            R R  L L+     ++     +   L+         +        F  LT RE + L  
Sbjct: 387 ERKRSELELVAAIEEVMQDASWFSQTLIEKLANAKSVNSPNQPNISFTDLTARERDVLGL 446

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I EG    EIA+ L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 447 ICEGLADKEIALRLKLAPNTVRNHVATVYSKLGVHSRSAAIVWARERGL 495


>gi|311107673|ref|YP_003980526.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310762362|gb|ADP17811.1| bacterial regulatory protein, LuxR family protein 10 [Achromobacter
           xylosoxidans A8]
          Length = 221

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 27/186 (14%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L+        + D  + S      +  + L         +                  
Sbjct: 48  VELLVMGCSGLAEQDVGLLSQSMAFFMPRLVLVLYSVLDPGV----------------MA 91

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   + L+   G    +      G           +     
Sbjct: 92  ACARAGVAGYMPKASSPDALAAAVSLVMAGGECYPQPAARPQG-----------ASHPPT 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            +  ELT R+ E L  + +GKT  EI   +GIS  TV ++  ++  K   + ++ A   A
Sbjct: 141 QELRELTQRQEEILQLLVQGKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIA 200

Query: 241 VRNNIV 246
           V+  +V
Sbjct: 201 VQMGLV 206


>gi|295677965|ref|YP_003606489.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
 gi|295437808|gb|ADG16978.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 229

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
            +    D    +   +  +     M  +     ++  + L++         D  +     
Sbjct: 6   RVVVADDHPVILFGAENALHKFPGMRVVGRARQSTELIKLLQSTECDVLVTDLAMPGGQY 65

Query: 84  FDLVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            D ++ +  L        ++         +                   + + D++ I +
Sbjct: 66  GDGLQLIDYLRRNFPNLPIV------VLTMLENAALLKRLKELGVTSVVNKSDDLSHISL 119

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +  +   +                +  +        D +L+ RE+E +     G T
Sbjct: 120 AVQHVGRRMTYMSPSV--------KAVLDGLRVNSAGMRDDSKLSRRELEVVRLFVSGMT 171

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EI+  L  S  T++    + MRK      S    YA  N ++
Sbjct: 172 IKEISERLNRSIKTISTQKNAAMRKLGIDRDSQLFQYAQSNGLL 215


>gi|262042600|ref|ZP_06015756.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329998588|ref|ZP_08303172.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
 gi|259040034|gb|EEW41149.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538607|gb|EGF64707.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3]
          Length = 182

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D +R+  G+  +    +      +        + A     +     ++  LT 
Sbjct: 73  GVFRHDDDESRLIEGVKAVLNGEQTAELSVM--------HPAMYAADHASTPVENSPLTE 124

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  +  G T+ +IA  L IS NTV  ++ ++ RK + K R+ A+++A  +
Sbjct: 125 RECEILNELRCGATNLDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWANEH 179


>gi|91784262|ref|YP_559468.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91688216|gb|ABE31416.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
 gi|99652808|dbj|BAE94657.1| response regulator [Burkholderia xenovorans LB400]
          Length = 214

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 39  LDCTVSWTMRMYALTEYVGA--------SHFLLVRWDLFQEQ-----KLDSIVSSDWPFD 85
           +D   +    +  L E  G           F+                LD  +S     +
Sbjct: 14  VDDDEAVRDSLRWLLEANGYRVQCFSSAEQFIDAWQPHTHPGQIACLILDVRMSGMSGLE 73

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +                 +F      +P  ++        +    FD A +R  + 
Sbjct: 74  LQERLIADN--------ASLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVE 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  K R                     +       +  +LT RE + L  I  G+ + +
Sbjct: 126 RMLDKARSESTSV---------------QQQRAAAERLGKLTAREHQVLERIIAGRLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  LGIS  TV  + A+IM K    T +  +  A+ N
Sbjct: 171 IADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSN 208


>gi|86147901|ref|ZP_01066206.1| Response regulator [Vibrio sp. MED222]
 gi|85834328|gb|EAQ52481.1| Response regulator [Vibrio sp. MED222]
          Length = 209

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +                 D 
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKK--------------EDE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGSNGMSGL--IQLRAEYPDLPIV------VISASEDASVVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               +      K   LT 
Sbjct: 104 GFIPKSSDMRELVSALNQVLNGDPFFPEGLITN-----------NAACSDLAEKLSTLTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|329947902|ref|ZP_08294834.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328523526|gb|EGF50624.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 203

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ L+  +    ++       G     +          +D  
Sbjct: 2   IRVMLADDQAMVRGALAALLTLETDIEVVAQVGN-----GNDVLPVALEHRPDVVLMDVD 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +           L     L    F              + +       
Sbjct: 57  MPGTDGLSATSKLLER--------LPTTRVLIVTTFGRPGFLRRAVQSGAHGFVVKDAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R++      +  +                  D  LT RE E L   
Sbjct: 109 TDLAESVRRVHAGLRVVDPALAADSLVFG----------------DSPLTARETEVLQAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +   +
Sbjct: 153 ADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQKGWI 201


>gi|148240284|ref|YP_001225671.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848823|emb|CAK24374.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 241

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 11/182 (6%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
               Q Q    ++ +D          +         L+    L  P+  T+   I     
Sbjct: 60  LGNIQSQAATLLLCTDLLESGSGISLVERALAVQPELKVLILLHRPIARTILNAIE---A 116

Query: 126 MDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
             +  C++ +     +      +   G+ +         L++    +             
Sbjct: 117 GCHGICAVQSAGTGAVATAFTAIDSDGQYLDP-------LISGVLHHSRLPSSGQSLPLQ 169

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  +  G +++ IA  L +S  TV ++++S++RK A K R+ A+  A R  
Sbjct: 170 ELTMREEDVLRGLCRGMSNEAIANDLVVSIETVKSHVSSLLRKLAAKDRTAAVVTAFREG 229

Query: 245 IV 246
           +V
Sbjct: 230 LV 231


>gi|116072236|ref|ZP_01469503.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116064758|gb|EAU70517.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 227

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 87/241 (36%), Gaps = 24/241 (9%)

Query: 12  LNREDEQRTSF--VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           L + D  R +   V  L      +A M  +    +++  +      +GA           
Sbjct: 4   LVQSDRVREALEEVKGLLVGKTSMACMGDMLTLAAFSHAVPINHSLLGAYTTEREALTAC 63

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
           Q+++ D +  ++            +      V +          H   +++   A   N 
Sbjct: 64  QDRQPDLLYITEQLEQGYGINLALKVKNISPVTRVLL-----FLHRESQDVVREAIEAN- 117

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDF 184
                        G++ +   G+    D L  I  +A   +   K      G     +  
Sbjct: 118 -----------VDGIIFVHSIGQSADGDFLKSIRAIANGSSYYPKEVRTMAGYVKSIELA 166

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E L  + +G ++ E+A +L +S  T+ +++++++ K   K R+ A+  A+R  
Sbjct: 167 GLSDRESEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226

Query: 245 I 245
           +
Sbjct: 227 M 227


>gi|85713171|ref|ZP_01044202.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
 gi|85692995|gb|EAQ30962.1| Response regulator, LuxR family protein (CheY, HTH domains)
           [Idiomarina baltica OS145]
          Length = 210

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +   A+I   +  +      + +D    +  ++     + +          E
Sbjct: 98  GALGFIPKSLPSAQIAEAISTILDGDTWVPKDNRDRLDGISNEDQELARKVS-------E 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++   L ++ EG  + +IA  L I+  TV  +I +I RK    +R+ A+  A R  +
Sbjct: 151 LTPQQYRVLHFLHEGLLNKQIAYQLNITEATVKAHITAIFRKLGVYSRTQAVLVAERLQL 210


>gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein
           [gamma proteobacterium IMCC2047]
          Length = 151

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 46/98 (46%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                 +R++L  I     Y A+ F        +   LT RE++ L  I  GK + EIA 
Sbjct: 49  GSPVDQMREKLPLISQGGRYVASEFLELIQQGQQVSALTDRELQVLNMIVAGKINKEIAE 108

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV+ +  S+M K    + +  +A A+++ ++
Sbjct: 109 ALFISPKTVDKHRTSLMSKLEVHSVAQLLARALKDGLI 146


>gi|291616750|ref|YP_003519492.1| FimZ [Pantoea ananatis LMG 20103]
 gi|291151780|gb|ADD76364.1| FimZ [Pantoea ananatis LMG 20103]
 gi|327393176|dbj|BAK10598.1| fimbrial Z protein FimZ [Pantoea ananatis AJ13355]
          Length = 195

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 64/217 (29%), Gaps = 29/217 (13%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
            F++ L    D     + L+  ++ +     L                     LD  +  
Sbjct: 1   MFMASLLLIDDHPLVEVALEAALAKSPIPLQLYSACSEQSARAFLSLPPDIIVLDIGLPD 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +++R + +        VL    +                A     Y   +  + ++
Sbjct: 61  GDGLEILRRLKI--HLPDCPVLIYSAQQTS------HYVRRAQALGAAGYVVKSQRMEQL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +                             D     +  LT +E + L  ++ G
Sbjct: 113 LSAILAVLGGHVAFP---------------------DCPDEPELPLTSKERQILALLASG 151

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ++ +IA  L IS  TV+ +  +I+ KT T++     
Sbjct: 152 LSNLQIAERLHISNKTVSTHKKNILEKTGTRSVVELA 188


>gi|238028033|ref|YP_002912264.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237877227|gb|ACR29560.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 212

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 38/237 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q  + +  +DE     +  L       +      +  +          +          
Sbjct: 8   PQETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ---------- 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +S     +L   +                 +F      +P  ++   
Sbjct: 58  ----IACLILDVRMSGMSGLELQERLIADN--------AALPIIFVTGHGDVPMAVSTMK 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +    FD A +R  +  +  K               A  ++   +       +  
Sbjct: 106 KGAMDFIEKPFDEAELRSLVERMLNK---------------ARSESKTVQEQRAASERLS 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 151 KLTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|49079004|gb|AAT49843.1| PA3948 [synthetic construct]
          Length = 210

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 34/239 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWD 67
            +++  +       V  L  +                   +  + E   G     LVR  
Sbjct: 3   TVLIVDDHPVIRLAVRVLLEKH-----------------GLQVVAETDNGVDAIQLVREH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++  +          VL   ++                    
Sbjct: 46  EPDVVILDIGIPKLDGLTVISRIKSLGL--RSQVLVLTSQSAEAF------CKRCIQVGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   D+  +   L  +              +G                      L+
Sbjct: 98  RGFVNKEEDLNNLINALNAVTAGYTFFPSLTFDTLGT--------PPERISESELIGLLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G ++  I   L +S  TV+ Y   +++K    +      +A RN+++
Sbjct: 150 DREMIVLQHLAMGYSNKAIGEKLFLSNKTVSTYKTRLLQKLGLGSLVDLAEFAKRNSLI 208


>gi|15598800|ref|NP_252294.1| response regulator ErdR [Pseudomonas aeruginosa PAO1]
 gi|107103118|ref|ZP_01367036.1| hypothetical protein PaerPA_01004187 [Pseudomonas aeruginosa PACS2]
 gi|116051601|ref|YP_789560.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984066|ref|YP_001346921.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218890171|ref|YP_002439035.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254242302|ref|ZP_04935624.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192]
 gi|296387892|ref|ZP_06877367.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313108962|ref|ZP_07794937.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9949760|gb|AAG06992.1|AE004780_11 response regulator ErdR [Pseudomonas aeruginosa PAO1]
 gi|115586822|gb|ABJ12837.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126195680|gb|EAZ59743.1| hypothetical protein PA2G_03043 [Pseudomonas aeruginosa 2192]
 gi|150959224|gb|ABR81249.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218770394|emb|CAW26159.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310881439|gb|EFQ40033.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 217

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L        R++          R+    ++             
Sbjct: 6   ILIADDHPLFRSALHQALTLGLGPDVRLVEAASIAELEARLNEKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +    +     V+    +                    +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLL--RGQYPQVPVVMISAQE------EAAVVQRSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  ++  +  +                L    +A               LT 
Sbjct: 104 GFIPKSSPLETLQQAVRAVLDGDTWWPPQDAAAEALSEEAKAASAGLAS--------LTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGLLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALL 206


>gi|270264205|ref|ZP_06192472.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041854|gb|EFA14951.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 196

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 62/222 (27%), Gaps = 32/222 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +F+           +++ L+  +       +  +         +     +    D  
Sbjct: 3   LRVAFIDDHDIVRSGFVQLLSLEADIQVVGEFSSAAQAR-----AGLPGLEAEICICDIS 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      DL+  +                 +   +                 + S     
Sbjct: 58  MPDGSGLDLLADIPS-----------GIRVVMLSMHDNPALVELALERGACGFLSKRCKP 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   G  ++ +   ++  +                K   LT RE E    +
Sbjct: 107 EDLITAVRTVASGGVYLMPEIAQQLARV----------------KVDPLTRREREIALLL 150

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++G+   EIAV+LG+S  TV+ + A++  K            
Sbjct: 151 AQGQEVREIAVVLGLSPKTVHVHRANLFAKLGINNNVELAKR 192


>gi|227503679|ref|ZP_03933728.1| two-component system response regulator [Corynebacterium accolens
           ATCC 49725]
 gi|227075715|gb|EEI13678.1| two-component system response regulator [Corynebacterium accolens
           ATCC 49725]
          Length = 205

 Score = 91.9 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 62/230 (26%), Gaps = 31/230 (13%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  ++  +  +    +     E  G     LV     +   LD 
Sbjct: 7   PIRILIAEDQSLVRGALVALLTTEPDIDVVAQCATGNEVAG-----LVAKHNVEVALLDI 61

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      D+   ++ S              L    F                +      
Sbjct: 62  EMPGKSGLDVAEELSGS----------PCKCLIVTTFGRGGYVKRAIDADIAGFIVKDTP 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +  +    R+I      E                  +  D  LT RE E    
Sbjct: 112 PEQLAEAIRRVKAGLRVIDPALARE----------------SLFTPDNPLTPREREIARL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  G TS E+A  + +S  +V N ++SIM KT    R  A   A     +
Sbjct: 156 LLSGVTSSELARKVHLSPGSVRNVVSSIMTKTDANNRYEAATKAQTQGWI 205


>gi|85716119|ref|ZP_01047095.1| response regulator FixJ [Nitrobacter sp. Nb-311A]
 gi|85697118|gb|EAQ35000.1| response regulator FixJ [Nitrobacter sp. Nb-311A]
          Length = 205

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 42/241 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDL-LARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + N+ +  +D      +  L   +D  +         +     +                
Sbjct: 4   RGNVYVIDDDPTMRDSLDFLLGSADFNVTLFDTAADFLDAHSGL---------------- 47

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             LF     D  +      DL+R +  S              +       +P  +     
Sbjct: 48  --LFGCVLSDVRMPGINGMDLLRRLKASASP--------LPIIIMTGHGDIPLAVEAMKL 97

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    F+  R+   + +               +     +  +   S +    +   
Sbjct: 98  GAFDFVEKPFEDERLIGMIEVA--------------LQQNPNHTKSDTVSAE-IASRLAT 142

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + +  +  G ++  IA    IS  T+  Y A++M K      S  I  A+R  I
Sbjct: 143 LSQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKMQAHNLSELIRLALRAGI 202

Query: 246 V 246
           +
Sbjct: 203 L 203


>gi|126172600|ref|YP_001048749.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS155]
 gi|152998897|ref|YP_001364578.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS185]
 gi|125995805|gb|ABN59880.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS155]
 gi|151363515|gb|ABS06515.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS185]
          Length = 198

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L++   F     D  +      +L   +             +   +    F   
Sbjct: 34  GDEALSLLKQQSFDLLLTDIEMPGRTGLELAAWLKDQHS--------QTKVVVITTFGRA 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +         +   +  +    R+I      E+ ++A          
Sbjct: 86  GYIKRAIEAGVGGFLLKDAPSETLVNAIQQVMAGKRVIDP----ELAMMAI--------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    L  +E   L   SEGK++ +IA  L I+  TV NY++  + K     R  A
Sbjct: 133 ----GDVDPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDA 188

Query: 237 IAYAVRNNIV 246
              A +   +
Sbjct: 189 ARIAKQKGWL 198


>gi|299133991|ref|ZP_07027184.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
 gi|298590738|gb|EFI50940.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2]
          Length = 216

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R    +  P  S  LA ++  +           ++E VG     LVR        ++ ++
Sbjct: 5   RVVIANRNPLTSQNLADLLHAEGNFEVVASCATISECVG-----LVRARSPDIAIIERLM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           SS  P            D    V                E           +      VA
Sbjct: 60  SSKIPEQ----------DILAAVASACFFTRVVFLAASSEPDDISVITSYEWPLKGSTVA 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
           R    +++                   A+   N     +        LT RE E +  IS
Sbjct: 110 RCLAQIVIGH------SPANSTPNPTSASRHQNKPARVETPGQPLSYLTEREREIMHEIS 163

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           EG ++ E A  L IS  T+  ++  I  K + K R+  +A A
Sbjct: 164 EGISNKEAARRLNISEGTIKLHLHHIYHKLSIKNRAELVAMA 205


>gi|212637151|ref|YP_002313676.1| regulatory protein LuxR [Shewanella piezotolerans WP3]
 gi|212558635|gb|ACJ31089.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3]
          Length = 223

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 1/127 (0%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMF 173
              +  +               +     GL  +        R  +      L +      
Sbjct: 84  DSLDEESALLLGVRGLLFSDQRMDLQLTGLRKILADELWYDRTLISRVFRQLVSQIETPL 143

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +          +LT RE   +  +S G  + EIA  L IS +TV  +I+SI RKT  + R
Sbjct: 144 QLSTEGSESFQQLTRREKTIIQLVSSGARNKEIAEGLCISEHTVKAHISSIFRKTHARNR 203

Query: 234 SGAIAYA 240
              + +A
Sbjct: 204 VELLRWA 210


>gi|332663177|ref|YP_004445965.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331991|gb|AEE49092.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 213

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 66/241 (27%), Gaps = 30/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +++  + +        +  +   +  +                             
Sbjct: 3   PKIRVLIADDHQLVRKGFVSILEQIPQVEIVADAANGREVMDAFRRGIRA---------- 52

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +                 +   + +           
Sbjct: 53  ----DVVMLDYEMPLMNGLETLEQLKKDYFGI--------KVIMLTMLNERSIIQQAIEK 100

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +      +A +   +  +    +    +    +   AA   N      +   +   
Sbjct: 101 GADGFLFKNTSIAELSSAIYKVNQGEKYFAGEVALTLAKPAASIQNQALLELLSERELEI 160

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L          +++G +S EI   L IS  TV+ +  ++++K   +  +G +  A++N +
Sbjct: 161 L--------KLVAQGFSSTEIGQQLFISPRTVDTHRNNLIQKLEVRGIAGLVQLAIKNKL 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|264680026|ref|YP_003279935.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|262210541|gb|ACY34639.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
          Length = 161

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 53/174 (30%), Gaps = 16/174 (9%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +D  +      D +  +           +        P        I       + Y +
Sbjct: 3   LMDLSMPGQSGIDALAMLRAK-----APDMGILILSGYP---EEHYAINLIRQGASGYLN 54

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              D   I   +  +    R +       +                      +L+ RE +
Sbjct: 55  KECDPQDIAEAIRTVALGRRYLTPAVADLLAQQLNR--------KDDVPAHEQLSEREFQ 106

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               ++ G+T+ +IA  L +S  TV+ Y   +M K    + S    YA++N ++
Sbjct: 107 VFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNRLI 160


>gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1]
 gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 496

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 78/252 (30%), Gaps = 21/252 (8%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           ++ E++    V  R+ E+R +    L      +  +I             A  + +    
Sbjct: 250 VDMELRHKAEVALRQSEERFAKAFRLTP----VPILICSADEQRLIDVNQAFLDTLAYES 305

Query: 61  F-----LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
                  + + D   E    + + +                +    L         V   
Sbjct: 306 DDVLGKTVAQLDFIDEPAERARLLAALEKTGRVDRVDMRIRRKDAELLECAMSADTVNIQ 365

Query: 116 LPENITPPAGMDNRYCSLTFDV-ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                         Y  +  D+  R R  L L+     ++     +   L+         
Sbjct: 366 D----------AVCYLLVLMDITERKRTELELVAAIEEVMKDASWFSRTLIEKLANVKKV 415

Query: 175 SYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +        F  LT RE + L  I EG    EIA  L ++ NTV N++A++  K    +R
Sbjct: 416 NSPQLPSVSFTDLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSR 475

Query: 234 SGAIAYAVRNNI 245
           S AI +A    +
Sbjct: 476 SEAIVWARERGL 487


>gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2]
 gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1]
          Length = 160

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 14/159 (8%)

Query: 102 LQRPTELFCPVFH--------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
           ++     + P+                    G+ + +         +   L L+     I
Sbjct: 1   MRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESI 60

Query: 154 ILRDRLWE------IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              + L +      I  +         +  +    +  LT RE E L W + GKT  EI 
Sbjct: 61  AATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIG 120

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IL I + TV  +I + MRK  +  ++ A   A    ++
Sbjct: 121 LILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 159


>gi|325269083|ref|ZP_08135704.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988704|gb|EGC20666.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 217

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD--VHWGKDFELT 187
             ++T D      G         +   + +  I  +  Y  +  ++        K+  L+
Sbjct: 96  VLTITKDPNAQLSGFHSFCIN--VPEDELVKAILKIEQYGHSGGRNLPELPQVLKNKILS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S    YAV +  +
Sbjct: 154 NREIEVLSLIVQGLINKEIAEKLNISLTTVITHRKNIMYKLGMRSVSALTIYAVMHGYI 212


>gi|296130130|ref|YP_003637380.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296021945|gb|ADG75181.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 208

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 69/229 (30%), Gaps = 36/229 (15%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  + E     ++ +  R+D +  +           R                     Q
Sbjct: 1   MIVDDHEVVRRGIAEVVERTDGMTVVAEAGSVADGVRR---------------ATLVRPQ 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      DL+R +  +        L     +    F              + Y
Sbjct: 46  VMLVDLQLPDGTGIDLMRSVRET--------LPTARAIVLTSFDDDDALAAALDAGASAY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              +   A I   +  +     ++    +              +    H      LT  E
Sbjct: 98  LLKSVRGAEITDVIRAVAAGRTLLDDRTVA-------------RRRAGHEDPTESLTPSE 144

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +  L  I EG ++ EIA  LG++  TV N+I S++ K   + R+   A+
Sbjct: 145 LRVLDLIGEGMSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 193


>gi|292490863|ref|YP_003526302.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291579458|gb|ADE13915.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 213

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 65/219 (29%), Gaps = 32/219 (14%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSDW 82
             A +  +D   +    +  + E  G                         LD  +    
Sbjct: 6   HPAIVFVVDDDEAVRDSLRWVIESAGFKVKTYPSAGEFLKKLDPSQSGCLVLDVRMPEMS 65

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L + ++         V+        P      + +    G    +    FD      
Sbjct: 66  GLQLQKLLSEKNNPL--PVIFISAHGSVP------DAVGALHGGAIDFLMKPFDNQ---- 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                      IL +R+     L   +    +  +    +  +LT RE + +  I +GK 
Sbjct: 114 -----------ILLERIERSIKLDRKRRETRQQQEEIAQRVAQLTSRERQVMELIVKGKP 162

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  +A+ LGIS  TV  + A +M K   K  +  I  A 
Sbjct: 163 NKVVAIELGISTKTVEIHRARVMEKLEAKNLADLIHLAR 201


>gi|295676611|ref|YP_003605135.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
 gi|295436454|gb|ADG15624.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 239

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 65/245 (26%), Gaps = 28/245 (11%)

Query: 2   NFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           N +   + ++L  +     S +SH             +   +         TE       
Sbjct: 9   NMDAFAIRVILADDHPVMLSGISH---------EFAEVKT-IQLVGTARNSTEL-----I 53

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L+          D  + +    D +     S   + Y  ++        +         
Sbjct: 54  ALLTSTQCDVLVSDYAMPAGEYGDGIALF--SLIKRRYPAIKIV---VLTMLDNPAVIRA 108

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                     S +     +   +  +   G+                            G
Sbjct: 109 LVTQGVTCIVSKSDAGTHLIPAVHAVHSGGKYYSPTI--------NQIVQSIDWNRRGRG 160

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE E +   + G T +EIA  L  S+ T++   +  M K   +       YA+
Sbjct: 161 SSDVLSQRESEVVRLFASGLTVNEIAEKLSRSKKTISTQKSKAMEKLGIEREVDLFRYAM 220

Query: 242 RNNIV 246
            N +V
Sbjct: 221 ENGLV 225


>gi|289432078|ref|YP_003461951.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288945798|gb|ADC73495.1| two component transcriptional regulator, LuxR family
           [Dehalococcoides sp. GT]
          Length = 226

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + I +  + E     +  +  +      +   +        +  + E            
Sbjct: 11  PIRIFIVDDHEIVRQGLKVIINQEQDFELVGESNGQKGL---LKEIAEAH---------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +S    FD+   +           ++         + +    +      
Sbjct: 58  --PDVLLLDIRISGSDGFDIASQLNEKF-----PSIKILIISG---YESELYLVEALDHK 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +         +   + ++   G +   + L+ +    +   N      V   K   L
Sbjct: 108 VSGFIPKGSSRDYVCSAIRMVALGGTVWHGELLYRVIRGLSRLGNEPNDTKVQIEKS-HL 166

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             RE++ L+ +++GK + EI   L IS +TV   I  +  K     R+     A    +
Sbjct: 167 KPRELKVLSLLAKGKLNKEICFELQISMDTVKKDIHQLKSKYGVFNRTQLATIATEMQL 225


>gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 514

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 44/96 (45%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
           G ++          + +      +     +    ELT RE E L  +SEG T+  IA  L
Sbjct: 419 GAVLRECVEDLRHTITSELPMQLEQQSFMFTLRLELTEREREVLRLMSEGLTNRAIASRL 478

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS  TV  +I  IM+K   + R+ A+A A++  ++
Sbjct: 479 LISIETVKTHIHHIMQKLQARDRTQAVALAMKYGLI 514


>gi|187732503|ref|YP_001880004.1| transcriptional regulator NarL [Shigella boydii CDC 3083-94]
 gi|187429495|gb|ACD08769.1| nitrate/nitrite response regulator protein NarL [Shigella boydii
           CDC 3083-94]
          Length = 216

 Score = 91.5 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRTTTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|297560053|ref|YP_003679027.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844501|gb|ADH66521.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 200

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 72/225 (32%), Gaps = 26/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       +   +S    +  L E   G                +D  + + 
Sbjct: 1   MTTVVLADDEALLRKAMAALLSLEGEITVLAEAEDGEEAVRATLDHRPDVLVIDLEMPNV 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                V  +          V+   T    P                  + S + + A I 
Sbjct: 61  DGLGAVERIRRELP---DQVILMLTRHARPGV-----LRKALKLRVQGFVSKSAEPAHIA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L    R I  D      +                  D  LT REV+ L   SEG 
Sbjct: 113 SVIANLHQGRRWIDPDVSALAVI-----------------DDCPLTDREVDVLRATSEGY 155

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +IA  L ++  TV NY+++ M+KT T+TR  A  YA  ++ +
Sbjct: 156 SVADIAAQLHLAEGTVRNYLSNAMQKTQTRTRHEAARYAREHDWL 200


>gi|163734137|ref|ZP_02141578.1| Transcriptional activator protein RaiR, putative [Roseobacter
           litoralis Och 149]
 gi|161392673|gb|EDQ17001.1| Transcriptional activator protein RaiR, putative [Roseobacter
           litoralis Och 149]
          Length = 154

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFP----KGRIILRDRLWEIGLLAAYQANMFKSYDV--H 179
            +  Y               +       +          E+ L+A Y       ++    
Sbjct: 26  GNQGYSIPIRGPNGQFALFTVNTSCDDEEWEEFTESNRRELILIAHYFNQKALEFEPNKT 85

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   L+ REV+ +T ++ G +  ++A  L IS +T+  YI S   K      + A+A 
Sbjct: 86  PEQSQSLSPREVDAMTLLAIGYSRAQVAETLSISEHTLRVYIESARFKLGAANTTHAVAR 145

Query: 240 AVRNNIV 246
           A+   ++
Sbjct: 146 ALSRGLI 152


>gi|187925649|ref|YP_001897291.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187716843|gb|ACD18067.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 229

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 63/242 (26%), Gaps = 28/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V +V+  +             +   L  +     +      +  +            
Sbjct: 2   QDPVRVVVADDHPVILFGAEQALLKFPGLQVVARARQSTELIKILQTVA----------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +      D +  +    ++       +   +   +            
Sbjct: 51  ----CDVLVTDLAMPGGQYGDGLPLIGYLRRNF-----PKLPIVVLTMLENAALLKRLSE 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                  + + D++ I + +  +      +       +        +  +        + 
Sbjct: 102 LGVTSVVNKSDDLSHIGLAVQHVSRNLEYMSPSVKASL--------DALRMNAGGKNDEV 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E +     G T  EI+  L  S  T++    + MRK   +  S    YA  N 
Sbjct: 154 MLSKRELEVVRLFVSGMTIKEISEHLNRSIKTISTQKNTAMRKLGIERDSELFQYAQSNG 213

Query: 245 IV 246
           ++
Sbjct: 214 LL 215


>gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
 gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp.
           RS9916]
          Length = 92

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 41/72 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S          L+GRE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSGGTPGSMSVSLSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ + 
Sbjct: 61  RVALLNWAMDHG 72


>gi|152989264|ref|YP_001348674.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150964422|gb|ABR86447.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 225

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 65/190 (34%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G    L V+ ++     +D  +      +L R +           L +   LF  +   L
Sbjct: 35  GEHALLAVQREIPSLVIVDLDLPGISGVELTRRLRQR--------LPQLRVLFFSLHDEL 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y +     A +   +  +      I +     +           +  
Sbjct: 87  ALVRQALDAGARGYLTKRAAPATLLEAVRRVLAGQVYIEQGLAIRLA--------CQQRS 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +       +LT RE E    ++ G    ++A  LG+S  TV+N+++ + +K    T++  
Sbjct: 139 EEGEAILRDLTRREFEIFRLLARGLAMRQVAEQLGVSGKTVSNHVSLLKQKLQVSTQAEL 198

Query: 237 IAYAVRNNIV 246
           +  A+ + ++
Sbjct: 199 VHRAIDSGVL 208


>gi|332670939|ref|YP_004453947.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332339977|gb|AEE46560.1| two component transcriptional regulator, LuxR family [Cellulomonas
           fimi ATCC 484]
          Length = 218

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 36/239 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  +   V +++  + E     ++ +  R+D +  +           R            
Sbjct: 1   MPSKPGPVTVMIVDDHEVVRRGIAEVVERTDGMTVVAEAGSVADGVRR------------ 48

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                    Q   +D  +      DL+R +  ++ D           +    F       
Sbjct: 49  ---AGLVRPQVMLVDLQLPDGTGIDLMRAVRETQPD--------ARAIVLTSFDDDDALA 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   +   A I   +  +     ++    +              +    H 
Sbjct: 98  AALEAGAAAYLLKSVRGAEITDVIRAVAAGRTLLDERTVT-------------RRKAGHE 144

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT  E+  L  I EG ++ EIA  LG++  TV N+I S++ K   + R+   A+
Sbjct: 145 DPTENLTPSELRVLDLIGEGLSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 203


>gi|330817674|ref|YP_004361379.1| two component LuxR family transcriptional regulator [Burkholderia
           gladioli BSR3]
 gi|327370067|gb|AEA61423.1| two component LuxR family transcriptional regulator [Burkholderia
           gladioli BSR3]
          Length = 212

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 36/236 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q  + +  +DE     +  L   +    R+        +        +           
Sbjct: 8   PQETVFVVDDDEAVRDSLRWLLEANGY--RVQCFSSAEQFLDGYQPALQA---------- 55

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +S     +L   +                 +F      +P  ++    
Sbjct: 56  -GQIACLILDVRMSGMSGLELQERLIADN--------AALPIIFVTGHGDVPMAVSTMKK 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    FD A +R  +  +  K               A  ++   +       +  +
Sbjct: 107 GAMDFIEKPFDEAELRKLVERMLDK---------------ARNESKSVQEQRAASERLSK 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 152 LTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|123441372|ref|YP_001005359.1| LuxR family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088333|emb|CAL11124.1| LuxR-family transcriptional regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 240

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 23/194 (11%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGM 126
           D  V S+           +       VL        P               ++     +
Sbjct: 43  DFTVISNTGN-WFEFYTQNNFQFTDPVLLMAAHCIMPFSWDEKIIFRWPKLFDMAKEYDV 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-----EIGLLAAYQANMFKSYDV--- 178
            N Y  +  D       L L+  K      +  +      I LL         S      
Sbjct: 102 FNGYTFVLHDQNNNLTVLSLMTDKDCNEDIEEKFGKDKGNIQLLLMSTHERLTSLYKDLN 161

Query: 179 ------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    ++   + RE E + W S GK   EIA+ILGI    V +++  ++RK     
Sbjct: 162 NTSIFYKVNRNEIFSTRENEIIYWASVGKAYQEIALILGIKPTAVKHHMGKVVRKLGVTN 221

Query: 233 RSGAIAYAVRNNIV 246
              AI+ AV   ++
Sbjct: 222 AKHAISLAVELQLI 235


>gi|127511543|ref|YP_001092740.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126636838|gb|ABO22481.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 199

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 60/206 (29%), Gaps = 28/206 (13%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR----WDLFQEQKLDSIVSSDWPFDLV-RCMALS 93
           +D   +    +  +    G      V      +     +   ++       +  + +   
Sbjct: 14  VDDDEAVLDSLSFMLRQFGYEMTTFVSGLRFLEEVDLSRPGCVILDSRMPAISGQALQQE 73

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
              K          +F      LP  +         +         +   +        +
Sbjct: 74  LLTKQSP----LGIIFLTGHGDLPMAVNAFRQGACDFFQKPVSGQALAAAI-----DKSM 124

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +   + +E   L+   A               L+ RE + L  + +GKT+ +++  L +S
Sbjct: 125 LHSQKAFEALQLSHNLA--------------TLSDREHQVLELLIQGKTNKQLSEALFLS 170

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239
             T+  + +++M+K      +    Y
Sbjct: 171 LRTIEVHRSNVMKKLKVHNLAELAKY 196


>gi|283785483|ref|YP_003365348.1| nitrate/nitrite two-component response regulator [Citrobacter
           rodentium ICC168]
 gi|282948937|emb|CBG88540.1| nitrate/nitrite two-component response regulator [Citrobacter
           rodentium ICC168]
          Length = 216

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +Q  I+L  +     + V  L + +  +  +                    G     L  
Sbjct: 5   EQATILLIDDHPMLRTGVKQLVSMAADITVVGEASN---------------GEQGIELAE 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +          V          V +   + +T    
Sbjct: 50  SLDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVF--------SVSNHEEDVVTALKR 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-F 184
             + Y     +   +   L        ++       +           ++      +D  
Sbjct: 102 GADGYLLKDMEPEDLLKSLQQAAAGEMVLSEALTPVLA-------ASLRANRATSDRDVT 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +  
Sbjct: 155 QLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 214

Query: 245 I 245
           I
Sbjct: 215 I 215


>gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 223

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 39/61 (63%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S+  ++ EIA +L IS  TV  ++++I+RK   + R+ AI Y++   +
Sbjct: 159 LSKREMEILKLMSQNHSNTEIAGMLYISLPTVKTHVSNILRKLGQQNRAQAILYSIATGL 218

Query: 246 V 246
           +
Sbjct: 219 I 219


>gi|241664591|ref|YP_002982951.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240866618|gb|ACS64279.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 222

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 64/242 (26%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + +V+  +     + V  L +       +            +  +            
Sbjct: 2   QPPIQLVIADDHPGVVAAVRRLVSGVHGFEVVGEASNADELLAVLARV------------ 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +      D +  +    +            +   +  T         
Sbjct: 50  ---RCDLAITDYAMPGSRYGDGILLLEFLMRRHPD-----LRVMVLTMLETRALMSNILR 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                  S + +   I  G+         +         L A       +    H     
Sbjct: 102 AGIKVIVSKSDEPQHILEGMQAAVDGRIYLSP------LLNAKLLCRNGEPQPAHDDPVA 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+E L     GKT  EIA  L  S  T+++   + MRK    T +    +AVR+ 
Sbjct: 156 KLGKRELEVLRMYVTGKTVSEIAQQLNRSVKTISSQKQTAMRKLELGTEAALFDFAVRHG 215

Query: 245 IV 246
           ++
Sbjct: 216 LL 217


>gi|92115145|ref|YP_575073.1| two component LuxR family transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91798235|gb|ABE60374.1| two component transcriptional regulator, LuxR family
           [Chromohalobacter salexigens DSM 3043]
          Length = 211

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 66/222 (29%), Gaps = 19/222 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D L     L   ++    ++ + E   G       R        +D+ +     +
Sbjct: 4   LLLAEDHLLVRAALAHLINAFQGIHVVAEEACGHEILDAARIHPVDVALIDAALLPIQDW 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+R +           +          + +              +      V  +   +
Sbjct: 64  DLIRQLKTVR-----PGINILVTSS---YLSDRYVERLMEAGACGFVHKNAAVNELETAI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                  R++                +   + +        LT R+ E L  I +G  S 
Sbjct: 116 RQAAANRRVLYPGVD----------VSGLAATEQAPSSVPALTRRQQEILKLIVDGCRSR 165

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA  L +S  TV  +   IMR+   +  +G +  A+R  +V
Sbjct: 166 TIAEQLDLSVKTVEAHRREIMRRVGKQNSAGLVKEAIRLGLV 207


>gi|146277969|ref|YP_001168128.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556210|gb|ABP70823.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 236

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 17/224 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +       +L+    A+  LL    L     LD  +   
Sbjct: 27  IVDDHPLMCDALAMTLTHAFGLKRVRSAASLS----AAETLLREGPLPDAIVLDLNLPDV 82

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + V  +            +                    A     Y S +    ++ 
Sbjct: 83  RGIEGVMSLRKLA--------RAVPLTVISAEVDAEMVTAVMAAGATGYVSKSLPRPQMI 134

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                ++    +   +   + G       +  +           LT +++  L  I +G+
Sbjct: 135 EAFGRMWAGEPVTPEEYDADGG-----GEDSGEQMRELARSFATLTPQQMNILRLICQGR 189

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 190 PNKLISYELSIAEATVKTHIAAIMSKINVRNRTQAALLASKARI 233


>gi|257055202|ref|YP_003133034.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256585074|gb|ACU96207.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 203

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 67/242 (27%), Gaps = 40/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I+ + IVL  +++     ++ L    D +  +                    G +   LV
Sbjct: 2   IELIRIVLADDEDLIRGALAALLDLEDDIEVVGQAGD---------------GDAAVELV 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R         D  + +    D    +   +      V +                    A
Sbjct: 47  RRTRPDLAVFDLEMPNCDGLDATSRVRAEQDIPIVIVTRHARPGVL---------KRALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T   +R+   L  +    R +  +                           
Sbjct: 98  AGVRGFVPKTTAASRLAEILRDVHAGKRYVDPEIAA----------------SALTATSC 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L +   G T   IA    ++  TV NY++S M K    TR  A   A    
Sbjct: 142 PLTERELELLRYAHTGSTVGAIAERARLAPGTVRNYLSSAMSKLGVSTRYEAARRAWEEG 201

Query: 245 IV 246
            +
Sbjct: 202 WI 203


>gi|83719569|ref|YP_443189.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167582209|ref|ZP_02375083.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167620367|ref|ZP_02388998.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257139423|ref|ZP_05587685.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653394|gb|ABC37457.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 210

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    ++ +   ++    +  + E    A    L+          D  +     
Sbjct: 4   QVLIADDHPLVLLGVRHMLAGVGDVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPA 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  ++        +       +   +        T          S   D+  +   
Sbjct: 64  ADGLAMLSAIR-----DGHPSVRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDELPRA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +                 +  +                +L+ RE+E +   + G T 
Sbjct: 119 VAAVCQGR-----------AFVGTHAGAASGLAMRATDAPPQLSPREIEVVRLCATGMTM 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA   G S  TV+ +  + M K   K+      YA  N +V
Sbjct: 168 TDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATENGLV 210


>gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 203

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 84/217 (38%), Gaps = 19/217 (8%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
              D    +I +   +        + E  G      +  ++ +    D ++     + LV
Sbjct: 2   LVDDDPNLVILISDYLELRGYQVTIAEN-GQKALEKLEEEVPELIICDIMMPEMDGYTLV 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
           + +  + +  + +V+    +          + +       + Y    FD   +   +   
Sbjct: 61  KLIRENAQFGWISVIFLSAKGQS------EDRVKGLNTGADVYMVKPFDPEELMAQV--- 111

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEI 206
                      L +   L  Y+ ++ ++      ++  ELT  E++ +  +++GK + EI
Sbjct: 112 --------ESSLRQTERLTRYRKSVIEASQKIRVREGVELTPTELKVVELVAKGKGNREI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + I+ +S+ T+ ++I++++ KT    R+    +A+ +
Sbjct: 164 SKIMEVSQRTIESHISNMLGKTGLHNRTQLARWALES 200


>gi|187921514|ref|YP_001890546.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719952|gb|ACD21175.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 213

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 67/237 (28%), Gaps = 30/237 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +     +   +  +I  D                G +   L R   
Sbjct: 3   TILVIDDHPAFRMVIKMQLVQLLGVEEVIEADN---------------GQTAVELARIHA 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   LD  +      D++  + L+       V+                         +
Sbjct: 48  PELAILDLDIPRISGLDVIPRLKLAHPQIR--VMVLSGHDPATF------APRAMRSGVH 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + ++  I  G+  +     +            A                   L+ 
Sbjct: 100 GFVGKSQEMKEIMRGVEAVMAGYTVFPMAVGGAGMTFADGVGGEEARIG-------LLSD 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E+  L  +S+G ++  I   L IS  TV+++   IM K   K+    I  A R  I
Sbjct: 153 KELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARRCRI 209


>gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 315

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 74/221 (33%), Gaps = 22/221 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T +++      ++LAR+     T     +     +  G +   +   +         +  
Sbjct: 109 TDYITKPIRAIEVLARIDAHMQTSRLMNQARGALDAFGQAAVAITPSNG------KVVWQ 162

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    + ++         Y     +       +      ++      D    ++     R
Sbjct: 163 TPLAREWMQRYFPEHYAHY-----QSKTPPQVLSWIEKVSLARETQADIPLLTIVLPRGR 217

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +            +       E  ++   + +     +      F+LT RE E L W ++
Sbjct: 218 L----------NFVPAELNDSEQWVILLREESDAAQIEALM-TIFKLTSRESEVLYWATK 266

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKTS +I  ILG S  TVN ++  +  K   +TR+ A A A
Sbjct: 267 GKTSRDIGDILGSSPRTVNKHLEHVFVKLGVETRTAAAALA 307


>gi|283138029|gb|ADB12476.1| NirZ [Methylomonas sp. 16a]
          Length = 202

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 34/235 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  + +     V  +   S  +         VS    +                  
Sbjct: 2   IHVMVADDHQLVREGVRKILASSPDIMLGCEAADGVSTLELVRK-------------YQC 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L+R +             +   L   + +      +      
Sbjct: 49  AGTLLLLDWTMPGG-GENLIRQIKALR--------PQLAILILSMHNEAAIAYSALRAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D   +   +  +    + I  + + ++                       L+
Sbjct: 100 SGYITKDSDPDTLIYAVKQIGAGRQFIDPNLVSQVL------------VTRPSPALDRLS 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE+E    + +G +  +IA  L IS  TV+ + +++M K    + +  + +++R
Sbjct: 148 ERELEIYQLLVKGTSVSDIARTLNISIKTVSTHKSNLMLKLNVDSIADLVRFSMR 202


>gi|241518604|ref|YP_002979232.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863017|gb|ACS60681.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 864

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 5/241 (2%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVS-WTMRMYALTEYVGASHFLLVRW 66
           + ++  R  E   + +  L    +    +  L         R +   E +G +  LL + 
Sbjct: 626 LAVLRTRRGEPADALLEELSRFLETGRELQRLAPYAELIAERAWLGLEDIGRALSLLDQA 685

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                      +   W   L   ++L        V+++                  P   
Sbjct: 686 IALSRDDAAVSLLLVWKRKLGADVSLCSDFDGDEVVRQMLAGDWAAAAETWSERRSPYWQ 745

Query: 127 DNRYCSLTFDVARIRIGLMLLFP-KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 L  D   +   L LL       + +     I       A               
Sbjct: 746 AM--TLLDGDDNAVYHALDLLEGMGASAVAQHVRAIIRGRLGRVAARGPRASTKANP-AG 802

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L W+  GK++ EIA +L +S  TV+++++SI+ K   KTR+ A ++A    +
Sbjct: 803 LTTREMDVLRWVDLGKSNGEIAALLFVSAKTVDHHVSSILAKLNAKTRTAAASHARSRGL 862

Query: 246 V 246
           +
Sbjct: 863 L 863


>gi|220924070|ref|YP_002499372.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948677|gb|ACL59069.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 251

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 71/233 (30%), Gaps = 21/233 (9%)

Query: 13  NREDEQRTSFVS-----HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVR 65
            R  ++R + V      HL    D       L   V       A+ E  G  A+   L R
Sbjct: 16  GRTPDERPAPVEKGSDMHLMIVDDHPLFREALASAVRLAFPAAAVEEADGIEAACATLSR 75

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +     FD +  +           +                     + 
Sbjct: 76  LRSVDLTLLDLTMRGVNGFDGLIAIRTRF-----PRIPILVVSGL---DDPRIVREALSH 127

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +       A +   +  +      +        G+ A               +  E
Sbjct: 128 GASGFVPKAAGKAVLTRAITDVLNGSIFVPE------GVGAQEGEAPRGGKPPIAQRIAE 181

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++V  L  I +GK + +IA  LG+  +TV  +++ I+RK    +R+  + 
Sbjct: 182 LTPQQVRVLLMIRQGKLNKQIAHELGVGDSTVKAHVSEILRKLGVISRTQIVI 234


>gi|110596769|ref|ZP_01385059.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341456|gb|EAT59916.1| regulatory protein, LuxR:Response regulator receiver [Chlorobium
           ferrooxidans DSM 13031]
          Length = 217

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
               T D   +   +       +    D L           ++    D        LT  
Sbjct: 105 IVLKTDDGDELFHAIEAALKGKKYYSGDVL-----------DILLKKDGPMEDASLLTTS 153

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E +  I+ G ++ EIAV   IS +TV  +  +I RK +  +    + YA++  ++
Sbjct: 154 EIEIVRLIAAGLSTKEIAVKKHISFHTVMTHRKNIFRKLSVSSSPELMMYAIKAGLI 210


>gi|325068150|ref|ZP_08126823.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Actinomyces oris
           K20]
          Length = 226

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 34/246 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      +S + +  D +  +         T R   LT              
Sbjct: 1   MRVLIVDDDALVAQSLSTILSVEDDVEVVGLGCSGPEATERYRELT-------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +   +             +F   F      +       
Sbjct: 47  -PDILLMDIQMPGGDGLSAAERILAED--------AGARIVFLTTFSDDEYIVRALKMGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-------IGLLAAYQANMFKSYDVHW 180
             Y     DVA++   L  +     ++  + L                 A          
Sbjct: 98  RGYLIK-QDVAQVAPALRSVMAGVCVLEGEVLERSTTMGLGGRTGGRGPAEEGPGASAKD 156

Query: 181 GKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +      LT RE E +  ++EG  + E A  L +S  TV N+I++I+ K   + R+   
Sbjct: 157 LRSTAFAALTDREYEVVEAVAEGLDNAEAAARLFMSEGTVRNHISAILAKLGLRNRTQVA 216

Query: 238 AYAVRN 243
               R+
Sbjct: 217 VMYYRS 222


>gi|170694723|ref|ZP_02885874.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|187924570|ref|YP_001896212.1| LuxR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|307729196|ref|YP_003906420.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|323526630|ref|YP_004228783.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|170140354|gb|EDT08531.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|187715764|gb|ACD16988.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
 gi|307583731|gb|ADN57129.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
 gi|323383632|gb|ADX55723.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 214

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 39  LDCTVSWTMRMYALTEYVGA--------SHFLLVRWDL-----FQEQKLDSIVSSDWPFD 85
           +D   +    +  L E  G           F+                LD  +S     +
Sbjct: 14  VDDDEAVRDSLRWLLEANGYRVQCFSSAEQFIDAWQPHQHPGQIACLILDVRMSGMSGLE 73

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +                 +F      +P  ++        +    FD A +R  + 
Sbjct: 74  LQERLIADN--------ASLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVE 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  K R                     +       +  +LT RE + L  I  G+ + +
Sbjct: 126 RMLDKARSESTSV---------------QQQRAAAERLGKLTAREHQVLERIIAGRLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  LGIS  TV  + A+IM K    T +  +  A+ N
Sbjct: 171 IADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSN 208


>gi|215486454|ref|YP_002328885.1| transcriptional regulator NarL [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264526|emb|CAS08893.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 216

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRASRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|104782772|ref|YP_609270.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95111759|emb|CAK16483.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 209

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++R        LD  +      +++  +                 L        
Sbjct: 38  GVDAMQMIRETRPDLVILDISLPKLDGLEMLSRLQTMAIP--------LKVLVLTAQSPA 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I         Y     D++ +   +  +           L    +    +  +F+  
Sbjct: 90  LFAIRCMHSGAAGYVCKQEDLSELLSAIKAVLSGYNYFPSQALNPAQVDRGQELELFRQV 149

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M K    T    
Sbjct: 150 N----------DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKKRLMHKLHANTLVEL 199

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 200 IDIAKRNALV 209


>gi|90409772|ref|ZP_01217789.1| hypothetical tetrathionate reductase complex: response regulator
           [Photobacterium profundum 3TCK]
 gi|90329125|gb|EAS45382.1| hypothetical tetrathionate reductase complex: response regulator
           [Photobacterium profundum 3TCK]
          Length = 196

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 44/230 (19%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +DE     ++ +    D       ++                G +       +  
Sbjct: 5   VFVVDDDESVRDSLAFMLEGYDF-----KVESYAD------------GVTFLDQANIEQA 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +       + R +                 +F      +P  +         
Sbjct: 48  GCVVLDIRMPIMMGQQVHRLLKDKHSP--------LVVIFLTGHGDVPMAVEALKHGAID 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +     D  ++   +     K          +  LL                    LT R
Sbjct: 100 FFQKPVDGEKLVAAIHHAEKK------SLHNQSQLLLHKAFE-------------TLTTR 140

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E + L  + +G  + +I+  L I+  TV  + +S+M+K   KT +  + +
Sbjct: 141 EQDILRLLVKGYKNQQISDELCIAVRTVEVHRSSLMKKLHAKTIAELVMF 190


>gi|329903580|ref|ZP_08273553.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548275|gb|EGF32969.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 213

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 23/233 (9%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
            E   R   V           R++  +  +          E        LV         
Sbjct: 2   SEHTLRIILVDDHAIVRTGYRRLLDAEPGLQVVGVAARADEA-----NALVAKVEADVAL 56

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           +D  +      + +R M                 L   +               + Y S 
Sbjct: 57  VDLSLKGSSGIEAIRGMLARR--------PALKILVLSMHEDAGHVTQALRSGAHGYLSK 108

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
             +   +  G+  +    R+        +   A+  A+ F           +LT RE + 
Sbjct: 109 HCEPEEVIDGIRGVAAGKRVFSPSIAQVLAEAASDDASAF----------TQLTPREFDV 158

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L    +G+++  IA  + +S  TV N + SI +K A +     +  A R+ +V
Sbjct: 159 LRMRVQGESASTIATSMQLSPKTVLNNLTSIRQKLAAENDVQLMHLAARHGLV 211


>gi|222102144|ref|YP_002546734.1| transcriptional regulatory protein [Agrobacterium radiobacter K84]
 gi|221728261|gb|ACM31270.1| transcriptional regulatory protein [Agrobacterium radiobacter K84]
          Length = 247

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 17/240 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R      L    D++AR+  LD  V     ++     +  + F        + ++ +  
Sbjct: 5   IRDVTSEELRLFGDIVARLSRLDNDVEARTAVFEDIVKLVRADFAASYIWNDRLRRFEKG 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP------------VFHTLPENITPPAG 125
           +  +   + +R               +  E                +      +     G
Sbjct: 65  LIHNMDPENIRNY-ERYYQFRDPHTFKLREKRKATLIEEVNPYNELIRTEFYNDFLKRDG 123

Query: 126 MDNRYCSLTFDVARIRIGLML-LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           + +      F+  R      L    K           +  ++ +      +    +    
Sbjct: 124 LHHGINVFLFEGDRDLGDFRLWRSAKSPDFSEREKMLLDTISPFLKKAMANGMERFEN-- 181

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE +    ++ G    EI  +L I  +TV  ++   M K     R+   A  +R N
Sbjct: 182 -LTPRERQIAFLVARGCRDREICDMLNIGFSTVRTHLNKAMEKKGCSNRAELAALIMREN 240


>gi|182412086|ref|YP_001817152.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839300|gb|ACB73552.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 217

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 63/237 (26%), Gaps = 25/237 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
                V + L  +D    ++V+ L    +            S    +  + E        
Sbjct: 2   KAAPNVAVGLVEDDAPYRAYVTALL---ESTGERRVAFAVGSAEEGLARIAEAH------ 52

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +        V+            V      +           I  
Sbjct: 53  ------VNVLLLDLRLPGISGGAAVQKFLT--------VQPDLLVIMLTALDAEEPVIES 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +      G  +       +  L               GK
Sbjct: 99  IKSGACGYLLKGASSEAVLGAVDDALAGGAPMSPSIARRVLGLLRAAPTTMAKV--AEGK 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              LT RE E L  ++ G++  EIA   G + +T+ N++A+I  K   ++R+ A   
Sbjct: 157 LAALTAREEEVLARVAAGRSDKEIAAEFGTALSTIKNHLANIYAKWRVRSRTEAAVR 213


>gi|89094688|ref|ZP_01167624.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
 gi|89081034|gb|EAR60270.1| probable two-component response regulator [Oceanospirillum sp.
           MED92]
          Length = 213

 Score = 91.5 bits (226), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 3/129 (2%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY---QAN 171
              E ++      N Y +     + +   +  +         + L ++           +
Sbjct: 80  NENEGVSVLQSGANGYTNTYVTGSLLFDVVKTVLRGDIWAGPELLQKLLKRLLSNPPVTD 139

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE + L+ +  G ++ EIA  L I+  TV  +++SI +KT   
Sbjct: 140 SKVDTAETVDCFEGLSSREHDVLSVLVTGASNKEIARELDITERTVKAHLSSIFQKTGVT 199

Query: 232 TRSGAIAYA 240
            R   +  A
Sbjct: 200 DRVSLVLMA 208


>gi|15599143|ref|NP_252637.1| two-component response regulator RocA1 [Pseudomonas aeruginosa
           PAO1]
 gi|107103465|ref|ZP_01367383.1| hypothetical protein PaerPA_01004535 [Pseudomonas aeruginosa PACS2]
 gi|218889769|ref|YP_002438633.1| two-component response regulator RocA1 [Pseudomonas aeruginosa
           LESB58]
 gi|9950136|gb|AAG07335.1|AE004813_2 two-component response regulator RocA1 [Pseudomonas aeruginosa
           PAO1]
 gi|218769992|emb|CAW25754.1| two-component response regulator RocA1 [Pseudomonas aeruginosa
           LESB58]
          Length = 209

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 34/239 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWD 67
            +++  +       V  L  +                   +  + E   G     LVR  
Sbjct: 3   TVLIVDDHPVIRLAVRVLLEKH-----------------GLQVVAETDNGVDAIQLVREH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++  +          VL   ++                    
Sbjct: 46  EPDVVILDIGIPKLDGLTVISRIKSLGL--RSQVLVLTSQSAEAF------CKRCIQVGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   D+  +   L  +              +G                      L+
Sbjct: 98  RGFVNKEEDLNNLINALNAVTAGYTFFPSLTFDTLGT--------PPERISESELIGLLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G ++  I   L +S  TV+ Y   +++K    +      +A RN+++
Sbjct: 150 DREMIVLQHLAMGYSNKAIGEKLFLSNKTVSTYKTRLLQKLGLGSLVDLAEFAKRNSLI 208


>gi|332558019|ref|ZP_08412341.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
 gi|332275731|gb|EGJ21046.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides WS8N]
          Length = 235

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 17/224 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +       +L     A+  +L    L     LD  +   
Sbjct: 26  IVDDHPLMCDALAMTLTHAFGLKRVRSAASLA----AAEKILREGPLPDAIVLDLNLPDV 81

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + V  +            +                    A     Y S +    ++ 
Sbjct: 82  RGIEGVMSLQKLA--------RSVPLTVISAEVDAEMVTAVMAAGAQGYVSKSLPRPQMV 133

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                ++    +   +   +         +  +           LT +++  L  I +G+
Sbjct: 134 EAFARMWTGEFVTPEEYDAD-----GAGEDGGEQMRELARSFATLTPQQMNILRLICQGR 188

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 189 PNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 232


>gi|329847838|ref|ZP_08262866.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328842901|gb|EGF92470.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 175

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 16/169 (9%)

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                 +D  +       +  R +A    D           L   +           A  
Sbjct: 6   RPDVILMDVRLGPGMDGLEACRRIAALGVD--------AKVLMLTLHDMPAYVREALAAG 57

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y      +  ++  ++ +      I  D       L           D        L
Sbjct: 58  ASGYVLKDTAIDDLKAAIVRVAEGHTAIPLD-------LVTAALRQPAMQDRQLDLIATL 110

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           T RE + L  ++EG T+ E+   L IS  TV  ++  I+ K     R+ 
Sbjct: 111 TARERQILHCVAEGMTNKEVGRHLDISPATVKAHVERIIAKLGVTDRTQ 159


>gi|253686983|ref|YP_003016173.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753561|gb|ACT11637.1| two component transcriptional regulator, LuxR family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 204

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                  T  V  I   L  +      +  D               +   +   GK   L
Sbjct: 97  VMGVVLKTSPVDSIAQALKTVSMGMVCLPDD---------GVIYEGWSVDNSVKGK---L 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 145 SERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|288574077|ref|ZP_06392434.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569818|gb|EFC91375.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 832

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 7/193 (3%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE---KDKYYNVL 102
              +   +  V  S  +  R  L    + D ++ S+      R             Y  +
Sbjct: 632 EGFLTGASPAVPFSCMVYGRLALLTGGERDLVLRSEELLFPARRYRNLLVEIYMGIYLSV 691

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                                  M +       + A +    + +  + R    +R    
Sbjct: 692 AYSRLGRESDGAEAL-GRALDMAMPDGLILPFAENADVLGSSLDVVMEERW-SSERNRFS 749

Query: 163 GLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
             +  Y     +      G++    LT RE +    +SEG ++ EIA  L +S NTV  Y
Sbjct: 750 SFVKRYSLGKERVLQSLSGREAVEGLTFRENDVALLVSEGLSNREIAKRLFLSENTVKFY 809

Query: 221 IASIMRKTATKTR 233
           + SI +K    +R
Sbjct: 810 LKSIFQKLGISSR 822


>gi|37223199|gb|AAQ90194.1| LuxR [Vibrio parahaemolyticus]
          Length = 208

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 17/191 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  +T+ V   ++LL         K D  +  ++P    +    +  
Sbjct: 18  IKRCRSNKDINQCLSDMTKMVHCEYYLLAIIYPHCMVKSDISIVDNYPKKWRQYYDDANL 77

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPA------------GMDNRYCSLTFDVARIRIG 143
            KY  ++        P+   + EN                 G+   +             
Sbjct: 78  IKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGLITGFSFPIHTANNGFGM 137

Query: 144 LMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DFELTGREVECLTWIS 198
           L     +       +       I L+     + ++  ++   K + +LT RE ECL W  
Sbjct: 138 LSFAHSEKDNYIDSLFLQACMNIPLIVPSLVDNYRKINIANNKSNXDLTKREKECLAWAC 197

Query: 199 EGKTSDEIAVI 209
           EGK+S +I+ I
Sbjct: 198 EGKSSWDISKI 208


>gi|323499247|ref|ZP_08104224.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323315635|gb|EGA68669.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 222

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I+ D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 114 ISLLLKGMEKIMNDEMWLSRKVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 174 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 201

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 64/223 (28%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   G       R        LD  +     
Sbjct: 3   RVLVAEDQSMVRGALRALLELEADITVVAEVGRGDEVLAAAREHTPDVALLDIEMPGQDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D  R +A          L     +    F                +      VA +   
Sbjct: 63  IDAARELAAE--------LPGVRAVVLTTFGRPGFLRRAMEVGAAGFLVKDAPVAELAKA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+I RD       + A                  L+ RE + L   ++G T 
Sbjct: 115 IRAVVAGERVIDRDLAAAALAIGA----------------TPLSTREADVLREAADGATV 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA  L +S  TV NY++S + KT  +TR  A   A     +
Sbjct: 159 ADIARRLFLSEGTVRNYLSSAIGKTGARTRVEAARVAADKGWL 201


>gi|114561545|ref|YP_749058.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332838|gb|ABI70220.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 202

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 53/190 (27%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      ++ D F     D  +      +L + +             +   +    F   
Sbjct: 38  GDKAMQQLKTDSFDLLLTDIEMPGKSGLELSQWLQQQRS--------QTKVIILTTFGRA 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +         +   +  +    R+I  +  +                
Sbjct: 90  GYIKRALEYGVGGFLLKDAPSEDLINAIKQVMAGKRVIDPELAF---------------- 133

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G+   L  +E   L   SEG ++ +IA  L I+  TV NY++  + K     R  A
Sbjct: 134 -TAIGEIDPLNDKERRALRLASEGLSTSDIASQLFIAEGTVRNYLSEAISKLNASNRIDA 192

Query: 237 IAYAVRNNIV 246
              A +   +
Sbjct: 193 ARIAKQKGWL 202


>gi|118722505|gb|ABL09961.1| regulator [Streptomyces echinatus]
          Length = 202

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 25/220 (11%)

Query: 33  LARMIPLDCTVSWTMRMYALT-EYVGASHFLLVRWDLFQ-----EQKLDSIVSSDWPFDL 86
           + R++  +        + AL  E VG                  + + D +V      D+
Sbjct: 1   MIRVLLAEDEHLIRGALTALLSEEVGIDVVADTGTGRSVLSLSLQHRPDVVVLDVMLPDM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                  +  ++    +        +  T            + Y       A +   +  
Sbjct: 61  TGLEVAEQLQEHLPSCRILLLTSLGIPGT---VRQALEQQVDGYLLKDAPPAALADAIRK 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R+I    +                      +   LT RE E L W SEG +  ++
Sbjct: 118 VAGGQRVIAPGLM----------------LAAWESRANPLTPRETEILRWASEGGSVRDV 161

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A    +S  TV N+++SI+ K   ++R  A+  A     +
Sbjct: 162 ADAARLSPGTVRNHLSSIVTKLGARSRLDAVRIAQDAGWL 201


>gi|15890276|ref|NP_355948.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15158472|gb|AAK88733.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 492

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 67/241 (27%), Gaps = 27/241 (11%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R      L      ++R+         T    A     G     +V     + + 
Sbjct: 262 RQSEERFFKSFRLSPVPAAISRL----DDFVLTEVNDAFLTLCGRKEAEVVGKTASELRL 317

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-------- 125
            D +          R            +      +      T    ++            
Sbjct: 318 WDDV--------PARRDIEKRLKDNIPIRNEAMRMNLADDGTAECIVSAERAEINDQLCV 369

Query: 126 --MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                           +   +  +        R  +  +  L                  
Sbjct: 370 IWAIQDVTERRRSENELIEAIESVMTDTSWFSRTVVERLAGL-----RQNSRGASPSASL 424

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L+ I +G +  E++  L +S++T+ N+IAS+  K     R+ A+ +A   
Sbjct: 425 KDLTDREEQILSLICDGSSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWARER 484

Query: 244 N 244
            
Sbjct: 485 G 485


>gi|53712701|ref|YP_098693.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60680860|ref|YP_211004.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|253563324|ref|ZP_04840781.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|265762790|ref|ZP_06091358.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|52215566|dbj|BAD48159.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60492294|emb|CAH07059.1| putative transcriptional regulatory protein [Bacteroides fragilis
           NCTC 9343]
 gi|251947100|gb|EES87382.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263255398|gb|EEZ26744.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301162406|emb|CBW21951.1| putative transcriptional regulatory protein [Bacteroides fragilis
           638R]
          Length = 225

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 42/120 (35%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                        I   L     K R I       +   +         +     +D  L
Sbjct: 99  AFGVVLKDNSKEEIMSALQCASRKERFICNHVSNLLLSGSGNVNTASAVHTFVPQEDRLL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  IV
Sbjct: 159 TPTEKIILKEIASGKTTKEIAAEKHLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGIV 218


>gi|114045833|ref|YP_736383.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113887275|gb|ABI41326.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 198

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 25/222 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D       L   ++            G     L++   F     D  +      
Sbjct: 2   HILLAEDQAMVRGALAALLTLAGGFTITQASNGDEALNLLKQQDFDLLLTDIEMPGRTGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L   +                 +    F                +         +   +
Sbjct: 62  ELATWLKEQHS--------HTKVVVITTFGRAGYIKRAIEAGVGGFLLKDAPSETLVHAI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    RII      E+ ++A              G    L  +E   L + SEGK++ 
Sbjct: 114 QQVIAGKRIIDP----ELAMMAI-------------GDVDPLNDKERRALRFASEGKSTA 156

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV NY++  + K     R  A   A +   +
Sbjct: 157 EIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198


>gi|283832869|ref|ZP_06352610.1| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
 gi|291071469|gb|EFE09578.1| nitrate/nitrite response regulator protein NarL [Citrobacter
           youngae ATCC 29220]
          Length = 216

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   LEPATILLIDDHPMLRTGVKQLVSMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATSDRDV 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 TQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|2981650|pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
           Protein Narl In The Monoclinic C2 Crystal Form
 gi|2981651|pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
           Protein Narl In The Monoclinic C2 Crystal Form
 gi|157833714|pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
           Narl
          Length = 215

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 3   QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 48  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 100 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 152

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 153 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 212

Query: 244 NI 245
            I
Sbjct: 213 RI 214


>gi|323703561|ref|ZP_08115206.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531464|gb|EGB21358.1| two component transcriptional regulator, LuxR family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 204

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 67/242 (27%), Gaps = 39/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ ++L  +       +  L    D ++ +            +               
Sbjct: 1   MEKIKVMLIEDHNVFREGLKKLIDLEDNMSVVAEAGSCQEALENVNQ------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      +L   +        Y  ++         +           
Sbjct: 48  ---DIDVILLDIGLPDGDGLELCEKIRAK-----YPKIKHV---ALTTYDDAIFIKKAME 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         IR  +++    G  +      +I    +               D 
Sbjct: 97  CGVKGFVPKYAFFDEIRAAILMTSKGGTYLYPGLNTDILFNLS---------------DP 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+  E++ L  ++ G++  +IA  L IS +T    + +I  K    T   A+  A +  
Sbjct: 142 GLSDIELKILQMLASGQSQKDIATNLFISLSTFRRRLKTIFSKLKVNTVEEALTVATKKG 201

Query: 245 IV 246
           ++
Sbjct: 202 LI 203


>gi|222055689|ref|YP_002538051.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
 gi|221564978|gb|ACM20950.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32]
          Length = 216

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              S           L  +      I  D++  +        N           +  L+ 
Sbjct: 108 GVISTDTPPEMFSKALHTVSKGQIWIDNDKIKAL------LHNQPSHLKPAGRAN--LSK 159

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E + + +I++G  + EIA  L IS  TV  +I+ I +K    +RS  +  A++  I
Sbjct: 160 KEQDIVAFIAQGLKNKEIAQRLCISEQTVKTHISRIFKKVDVVSRSQLVPLALKLRI 216


>gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis
           ATCC 25196]
          Length = 257

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           + L+                +  +L T RE E L  +  GK++ EIA +L IS  TV N+
Sbjct: 171 MALVRMLFHERHHKQGAVGERSRKLITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNH 230

Query: 221 IASIMRKTATKTRSGAIAYAVRNNI 245
           I  I++K     R+ A+A A+   I
Sbjct: 231 IQKILKKLDVNNRAHAVAKAMALKI 255


>gi|300787834|ref|YP_003768125.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797348|gb|ADJ47723.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 192

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 35/226 (15%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V       + +A ++     +    +  +  E       LL          LD  
Sbjct: 2   IRVQVVDDHALVREGIALILGAQPDLDVVAQYASGPE-------LLSSAVEADVVLLDLY 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +++R +  +              L         E           +       
Sbjct: 55  LPGMDGLEVLRRLGPAAP----------RVLMLTTVGRPREIREALTAGAAGFVLKDASG 104

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +                           +  +          LT RE + L  +
Sbjct: 105 DELAAAVRAAHQG------------------VTALSPAAASALSGGGVLTPRERDVLELL 146

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            EG ++ +IA  L ++  TV  ++ +++ K    +R+ A   A   
Sbjct: 147 GEGLSNRDIAARLRLAERTVKVHVGNVLAKLGVTSRTQAALAARDR 192


>gi|296452018|ref|ZP_06893733.1| salavaricin two component response regulator [Clostridium difficile
           NAP08]
 gi|296879587|ref|ZP_06903566.1| salavaricin two component response regulator [Clostridium difficile
           NAP07]
 gi|296259209|gb|EFH06089.1| salavaricin two component response regulator [Clostridium difficile
           NAP08]
 gi|296429390|gb|EFH15258.1| salavaricin two component response regulator [Clostridium difficile
           NAP07]
          Length = 206

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    +                + +       +   L+ ++  G     +    I     
Sbjct: 84  IILTGYDLPVYKHEAKKIGIYGFLNKNISPDSLIDSLLKVYQGGTCFPSENTEVII---- 139

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                            +LT  E   L  I  GK    IA  L IS  T++N++  I  K
Sbjct: 140 ----------------EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDK 183

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +   AI  A++   +
Sbjct: 184 LDVSSSVEAITKAIQMGYI 202


>gi|255657144|ref|ZP_05402553.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-23m63]
          Length = 200

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    +                + +       +   L+ ++  G     +    I     
Sbjct: 78  IILTGYDLPVYKHEAKKIGIYGFLNKNISPDSLIDSLLKVYQGGTCFPSENTEVII---- 133

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                            +LT  E   L  I  GK    IA  L IS  T++N++  I  K
Sbjct: 134 ----------------EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDK 177

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +   AI  A++   +
Sbjct: 178 LDVSSSVEAITKAIQMGYI 196


>gi|146924|gb|AAA24199.1| nitrogenase reductase [Escherichia coli]
          Length = 216

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEHLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|332520099|ref|ZP_08396563.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044658|gb|EGI80852.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 227

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 82/239 (34%), Gaps = 24/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +++     +  +   +  +  +   +      M +    E             
Sbjct: 5   IKIVLADDEQLFRQGLKAILENNKNIEVVFDAENGEELIMLLRQANE------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L +    D  +      ++ + +                 +    + + P  +   +   
Sbjct: 52  LPEIVITDLKMPKLNGVEVTKLIRKE--------FPDIKVIALTSYFSKPFILNMISIGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   +  +  KG    ++ +  I        +  K    ++   +  T
Sbjct: 104 VAYLAKNSTPNLMIKTIEEVANKGFYYGQEVIQFIHENLTNPND--KKVKSNFDTSY-FT 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I +  T+++IA  L IS  TV  +  +++ KT +K  +G + Y ++N +V
Sbjct: 161 KREIEVLELICQQSTTNDIAEKLFISPRTVEGHRNNLLLKTESKNVAGLVIYGLKNKLV 219


>gi|294813084|ref|ZP_06771727.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325683|gb|EFG07326.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 354

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 64/237 (27%), Gaps = 8/237 (3%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           +   + ++ +++  +       ++        +          +      AL +  G   
Sbjct: 91  LGVSVIRIRVLVVDDHRIFAESLAAALAAEPDVEVAAAGSGPAALRCLERALADGRGFDV 150

Query: 61  FLLVRWDLFQEQKLDSI---VSSDWPFDLVRCMAL--SEKDKYYNVLQRPTELFCPVFHT 115
            L+         +  ++   V+   P D    +    +      +V      +       
Sbjct: 151 MLVDADLGAGGGRPQAVRAPVARAVPDDGDEGLVDGITLVAGVRSVHPAVRTVVLAEKDD 210

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                         + +    + R+   +  +      +    L  +             
Sbjct: 211 PRRAALALQAGACGWVAKDCSLQRLLAVIRGVLRDETHLPPALLTGVLRELTAARKHRTE 270

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +        LT RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 271 SERLVES---LTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 324


>gi|294625380|ref|ZP_06704014.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600333|gb|EFF44436.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 212

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 76/235 (32%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++ L A ++      + +  + +             
Sbjct: 1   MADLTILVADDHPLFRAAVIHVLQQTLLQAHVVEASSAATLSAMLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSTPAESIGTAVASVLEGGTWFPP-----------MTAERSEADAQLASKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 202


>gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801]
 gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802]
          Length = 96

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+GRE+E L  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   + +A+
Sbjct: 8   SPASLSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWAL 67

Query: 242 RNN 244
           +  
Sbjct: 68  QWG 70


>gi|15801452|ref|NP_287469.1| transcriptional regulator NarL [Escherichia coli O157:H7 EDL933]
 gi|15830980|ref|NP_309753.1| transcriptional regulator NarL [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129184|ref|NP_415739.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|30062745|ref|NP_836916.1| transcriptional regulator NarL [Shigella flexneri 2a str. 2457T]
 gi|56479858|ref|NP_707130.2| transcriptional regulator NarL [Shigella flexneri 2a str. 301]
 gi|74312439|ref|YP_310858.1| transcriptional regulator NarL [Shigella sonnei Ss046]
 gi|82544324|ref|YP_408271.1| transcriptional regulator NarL [Shigella boydii Sb227]
 gi|82776565|ref|YP_402914.1| transcriptional regulator NarL [Shigella dysenteriae Sd197]
 gi|89108069|ref|AP_001849.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli str. K-12 substr.
           W3110]
 gi|110641452|ref|YP_669182.1| transcriptional regulator NarL [Escherichia coli 536]
 gi|110805228|ref|YP_688748.1| transcriptional regulator NarL [Shigella flexneri 5 str. 8401]
 gi|117623439|ref|YP_852352.1| transcriptional regulator NarL [Escherichia coli APEC O1]
 gi|157155985|ref|YP_001462476.1| transcriptional regulator NarL [Escherichia coli E24377A]
 gi|157160730|ref|YP_001458048.1| transcriptional regulator NarL [Escherichia coli HS]
 gi|168750784|ref|ZP_02775806.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758148|ref|ZP_02783155.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764371|ref|ZP_02789378.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4501]
 gi|168771112|ref|ZP_02796119.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776885|ref|ZP_02801892.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4196]
 gi|168782579|ref|ZP_02807586.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787727|ref|ZP_02812734.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC869]
 gi|168801536|ref|ZP_02826543.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC508]
 gi|170020409|ref|YP_001725363.1| transcriptional regulator NarL [Escherichia coli ATCC 8739]
 gi|170080852|ref|YP_001730172.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170682686|ref|YP_001743971.1| transcriptional regulator NarL [Escherichia coli SMS-3-5]
 gi|188496200|ref|ZP_03003470.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           53638]
 gi|191166642|ref|ZP_03028470.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           B7A]
 gi|193064827|ref|ZP_03045904.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           E22]
 gi|193069938|ref|ZP_03050886.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           E110019]
 gi|194425957|ref|ZP_03058513.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           B171]
 gi|194434280|ref|ZP_03066546.1| nitrate/nitrite response regulator protein NarL [Shigella
           dysenteriae 1012]
 gi|194437086|ref|ZP_03069185.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           101-1]
 gi|195939111|ref|ZP_03084493.1| transcriptional regulator NarL [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806227|ref|ZP_03248564.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816050|ref|ZP_03257229.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822290|ref|ZP_03262609.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396600|ref|YP_002270155.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918465|ref|YP_002292549.1| transcriptional regulator NarL [Escherichia coli SE11]
 gi|217327987|ref|ZP_03444069.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. TW14588]
 gi|218553776|ref|YP_002386689.1| transcriptional regulator NarL [Escherichia coli IAI1]
 gi|218558151|ref|YP_002391064.1| transcriptional regulator NarL [Escherichia coli S88]
 gi|218689169|ref|YP_002397381.1| transcriptional regulator NarL [Escherichia coli ED1a]
 gi|218694737|ref|YP_002402404.1| transcriptional regulator NarL [Escherichia coli 55989]
 gi|218699930|ref|YP_002407559.1| transcriptional regulator NarL [Escherichia coli IAI39]
 gi|237705185|ref|ZP_04535666.1| transcriptional regulator NarL [Escherichia sp. 3_2_53FAA]
 gi|238900455|ref|YP_002926251.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli BW2952]
 gi|253773778|ref|YP_003036609.1| transcriptional regulator NarL [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161306|ref|YP_003044414.1| transcriptional regulator NarL [Escherichia coli B str. REL606]
 gi|254792693|ref|YP_003077530.1| transcriptional regulator NarL [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018529|ref|ZP_05432394.1| transcriptional regulator NarL [Shigella sp. D9]
 gi|256023102|ref|ZP_05436967.1| transcriptional regulator NarL [Escherichia sp. 4_1_40B]
 gi|260843516|ref|YP_003221294.1| DNA-binding response regulator NarL [Escherichia coli O103:H2 str.
           12009]
 gi|260854885|ref|YP_003228776.1| DNA-binding response regulator NarL [Escherichia coli O26:H11 str.
           11368]
 gi|261224954|ref|ZP_05939235.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257188|ref|ZP_05949721.1| fused DNA-binding response regulator NarL and sensory histidine
           kinase NarX in two-component regulatory system
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291282247|ref|YP_003499065.1| Nitrate/nitrite response regulator protein narL [Escherichia coli
           O55:H7 str. CB9615]
 gi|293409608|ref|ZP_06653184.1| transcriptional regulator NarL [Escherichia coli B354]
 gi|293414498|ref|ZP_06657147.1| transcriptional regulator NarL [Escherichia coli B185]
 gi|293433537|ref|ZP_06661965.1| transcriptional regulator NarL [Escherichia coli B088]
 gi|300816917|ref|ZP_07097137.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 107-1]
 gi|300906868|ref|ZP_07124544.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 84-1]
 gi|300926596|ref|ZP_07142376.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 182-1]
 gi|300927722|ref|ZP_07143289.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 187-1]
 gi|300939542|ref|ZP_07154199.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 21-1]
 gi|300951974|ref|ZP_07165774.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 116-1]
 gi|300955917|ref|ZP_07168253.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 175-1]
 gi|300971871|ref|ZP_07171673.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 45-1]
 gi|300995955|ref|ZP_07181317.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 200-1]
 gi|301025350|ref|ZP_07188909.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 69-1]
 gi|301028163|ref|ZP_07191435.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 196-1]
 gi|301046874|ref|ZP_07193990.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 185-1]
 gi|301305593|ref|ZP_07211684.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 124-1]
 gi|301327061|ref|ZP_07220343.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 78-1]
 gi|301646968|ref|ZP_07246808.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 146-1]
 gi|306813756|ref|ZP_07447934.1| fused DNA-binding response regulator NarL and sensory histidine
           kinase NarX in two-component regulatory system
           [Escherichia coli NC101]
 gi|307137840|ref|ZP_07497196.1| nitrate/nitrite sensor protein NarX [Escherichia coli H736]
 gi|307310021|ref|ZP_07589671.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|309789143|ref|ZP_07683736.1| response regulator [Shigella dysenteriae 1617]
 gi|309794314|ref|ZP_07688738.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 145-7]
 gi|312966462|ref|ZP_07780684.1| response regulator [Escherichia coli 2362-75]
 gi|312971411|ref|ZP_07785586.1| response regulator [Escherichia coli 1827-70]
 gi|331657272|ref|ZP_08358234.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA206]
 gi|331662625|ref|ZP_08363548.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA143]
 gi|331682711|ref|ZP_08383330.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           H299]
 gi|84028640|sp|P0AF30|NARL_ECO57 RecName: Full=Nitrate/nitrite response regulator protein narL
 gi|84028641|sp|P0AF29|NARL_ECOL6 RecName: Full=Nitrate/nitrite response regulator protein narL
 gi|84028642|sp|P0AF28|NARL_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narL
 gi|84028643|sp|P0AF31|NARL_SHIFL RecName: Full=Nitrate/nitrite response regulator protein narL
 gi|12514939|gb|AAG56081.1|AE005339_8 pleiotrophic regulation of anaerobic respiration: response
           regulator for nar, frd, dms and tor genes [Escherichia
           coli O157:H7 str. EDL933]
 gi|42102|emb|CAA31742.1| narL [Escherichia coli]
 gi|42106|emb|CAA48935.1| narL [Escherichia coli]
 gi|1651615|dbj|BAA36089.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli str. K12 substr.
           W3110]
 gi|1787473|gb|AAC74305.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13361191|dbj|BAB35149.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. Sakai]
 gi|30040993|gb|AAP16723.1| nitrate/nitrite response regulator protein NarL [Shigella flexneri
           2a str. 2457T]
 gi|56383409|gb|AAN42837.2| nitrate/nitrite response regulator protein NarL [Shigella flexneri
           2a str. 301]
 gi|73855916|gb|AAZ88623.1| pleiotrophic regulation of anaerobic respiration: response
           regulator for nar, frd, dms and tor genes [Shigella
           sonnei Ss046]
 gi|81240713|gb|ABB61423.1| NarL [Shigella dysenteriae Sd197]
 gi|81245735|gb|ABB66443.1| pleiotrophic regulation of anaerobic respiration [Shigella boydii
           Sb227]
 gi|110343044|gb|ABG69281.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           536]
 gi|110614776|gb|ABF03443.1| Nitrate/nitrite response regulator protein narL [Shigella flexneri
           5 str. 8401]
 gi|115512563|gb|ABJ00638.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           APEC O1]
 gi|157066410|gb|ABV05665.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           HS]
 gi|157078015|gb|ABV17723.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           E24377A]
 gi|169755337|gb|ACA78036.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|169888687|gb|ACB02394.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170520404|gb|ACB18582.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           SMS-3-5]
 gi|187767794|gb|EDU31638.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4196]
 gi|188015062|gb|EDU53184.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4113]
 gi|188491399|gb|EDU66502.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           53638]
 gi|189000057|gb|EDU69043.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354988|gb|EDU73407.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360087|gb|EDU78506.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365624|gb|EDU84040.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372474|gb|EDU90890.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC869]
 gi|189376301|gb|EDU94717.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC508]
 gi|190903291|gb|EDV63012.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           B7A]
 gi|192927512|gb|EDV82129.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           E22]
 gi|192956691|gb|EDV87146.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           E110019]
 gi|194416012|gb|EDX32278.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           B171]
 gi|194417511|gb|EDX33614.1| nitrate/nitrite response regulator protein NarL [Shigella
           dysenteriae 1012]
 gi|194424069|gb|EDX40057.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           101-1]
 gi|208726028|gb|EDZ75629.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732698|gb|EDZ81386.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737775|gb|EDZ85458.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158000|gb|ACI35433.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. EC4115]
 gi|209772428|gb|ACI84526.1| nitrate/nitrite response regulator protein NarL [Escherichia coli]
 gi|209772430|gb|ACI84527.1| nitrate/nitrite response regulator protein NarL [Escherichia coli]
 gi|209772432|gb|ACI84528.1| nitrate/nitrite response regulator protein NarL [Escherichia coli]
 gi|209772434|gb|ACI84529.1| nitrate/nitrite response regulator protein NarL [Escherichia coli]
 gi|209772436|gb|ACI84530.1| nitrate/nitrite response regulator protein NarL [Escherichia coli]
 gi|209911724|dbj|BAG76798.1| nitrate/nitrite two-component response regulator [Escherichia coli
           SE11]
 gi|217318414|gb|EEC26840.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351469|emb|CAU97177.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli 55989]
 gi|218360544|emb|CAQ98102.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli IAI1]
 gi|218364920|emb|CAR02616.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli S88]
 gi|218369916|emb|CAR17691.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli IAI39]
 gi|218426733|emb|CAR07570.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli ED1a]
 gi|222033021|emb|CAP75761.1| Nitrate/nitrite response regulator protein narL [Escherichia coli
           LF82]
 gi|226899942|gb|EEH86201.1| transcriptional regulator NarL [Escherichia sp. 3_2_53FAA]
 gi|238860867|gb|ACR62865.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli BW2952]
 gi|242377003|emb|CAQ31726.1| narL [Escherichia coli BL21(DE3)]
 gi|253324822|gb|ACT29424.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973207|gb|ACT38878.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli B str. REL606]
 gi|253977421|gb|ACT43091.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli BL21(DE3)]
 gi|254592093|gb|ACT71454.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli O157:H7 str.
           TW14359]
 gi|257753534|dbj|BAI25036.1| DNA-binding response regulator NarL [Escherichia coli O26:H11 str.
           11368]
 gi|257758663|dbj|BAI30160.1| DNA-binding response regulator NarL [Escherichia coli O103:H2 str.
           12009]
 gi|260449643|gb|ACX40065.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|281178408|dbj|BAI54738.1| nitrate/nitrite two-component response regulator [Escherichia coli
           SE15]
 gi|281600645|gb|ADA73629.1| Nitrate/nitrite response regulator protein narL [Shigella flexneri
           2002017]
 gi|284921035|emb|CBG34100.1| nitrate/nitrite two-component response regulator [Escherichia coli
           042]
 gi|290762120|gb|ADD56081.1| Nitrate/nitrite response regulator protein narL [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324356|gb|EFE63778.1| transcriptional regulator NarL [Escherichia coli B088]
 gi|291434556|gb|EFF07529.1| transcriptional regulator NarL [Escherichia coli B185]
 gi|291470076|gb|EFF12560.1| transcriptional regulator NarL [Escherichia coli B354]
 gi|294491316|gb|ADE90072.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           IHE3034]
 gi|299878766|gb|EFI86977.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 196-1]
 gi|300301171|gb|EFJ57556.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 185-1]
 gi|300304652|gb|EFJ59172.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 200-1]
 gi|300317228|gb|EFJ67012.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 175-1]
 gi|300396068|gb|EFJ79606.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 69-1]
 gi|300401367|gb|EFJ84905.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 84-1]
 gi|300411118|gb|EFJ94656.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 45-1]
 gi|300417383|gb|EFK00694.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 182-1]
 gi|300448816|gb|EFK12436.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 116-1]
 gi|300455546|gb|EFK19039.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 21-1]
 gi|300464223|gb|EFK27716.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 187-1]
 gi|300530691|gb|EFK51753.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 107-1]
 gi|300839182|gb|EFK66942.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 124-1]
 gi|300846314|gb|EFK74074.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 78-1]
 gi|301074856|gb|EFK89662.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 146-1]
 gi|305852887|gb|EFM53333.1| fused DNA-binding response regulator NarL and sensory histidine
           kinase NarX in two-component regulatory system
           [Escherichia coli NC101]
 gi|306909739|gb|EFN40233.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|307627255|gb|ADN71559.1| nitrate/nitrite sensor protein NarX [Escherichia coli UM146]
 gi|308122219|gb|EFO59481.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 145-7]
 gi|308922897|gb|EFP68411.1| response regulator [Shigella dysenteriae 1617]
 gi|309701523|emb|CBJ00830.1| nitrate/nitrite two-component response regulator [Escherichia coli
           ETEC H10407]
 gi|310336008|gb|EFQ01208.1| response regulator [Escherichia coli 1827-70]
 gi|312288915|gb|EFR16813.1| response regulator [Escherichia coli 2362-75]
 gi|312945852|gb|ADR26679.1| transcriptional regulator NarL [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313649410|gb|EFS13841.1| response regulator [Shigella flexneri 2a str. 2457T]
 gi|315060475|gb|ADT74802.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia coli W]
 gi|315135860|dbj|BAJ43019.1| nitrate/nitrite sensor protein NarX [Escherichia coli DH1]
 gi|315254818|gb|EFU34786.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 85-1]
 gi|315288622|gb|EFU48020.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 110-3]
 gi|315290716|gb|EFU50088.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 153-1]
 gi|315297300|gb|EFU56580.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 16-3]
 gi|315615931|gb|EFU96557.1| response regulator [Escherichia coli 3431]
 gi|320176349|gb|EFW51408.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae
           CDC 74-1112]
 gi|320181770|gb|EFW56680.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC
           9905]
 gi|320185627|gb|EFW60389.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC
           796-83]
 gi|320188015|gb|EFW62682.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|320195767|gb|EFW70392.1| Nitrate/nitrite response regulator protein [Escherichia coli
           WV_060327]
 gi|320199262|gb|EFW73853.1| Nitrate/nitrite response regulator protein [Escherichia coli
           EC4100B]
 gi|320637375|gb|EFX07182.1| nitrate/nitrite sensor protein NarX [Escherichia coli O157:H7 str.
           G5101]
 gi|320643237|gb|EFX12438.1| nitrate/nitrite sensor protein NarX [Escherichia coli O157:H- str.
           493-89]
 gi|320648174|gb|EFX16850.1| nitrate/nitrite sensor protein NarX [Escherichia coli O157:H- str.
           H 2687]
 gi|320654008|gb|EFX22082.1| nitrate/nitrite sensor protein NarX [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659487|gb|EFX27056.1| nitrate/nitrite sensor protein NarX [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664624|gb|EFX31775.1| nitrate/nitrite sensor protein NarX [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323153242|gb|EFZ39503.1| response regulator [Escherichia coli EPECa14]
 gi|323162325|gb|EFZ48182.1| response regulator [Escherichia coli E128010]
 gi|323168393|gb|EFZ54074.1| response regulator [Shigella sonnei 53G]
 gi|323172423|gb|EFZ58060.1| response regulator [Escherichia coli LT-68]
 gi|323185615|gb|EFZ70976.1| response regulator [Escherichia coli 1357]
 gi|323187452|gb|EFZ72761.1| response regulator [Escherichia coli RN587/1]
 gi|323378963|gb|ADX51231.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
 gi|323937764|gb|EGB34029.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323942435|gb|EGB38604.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323947494|gb|EGB43498.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323949661|gb|EGB45547.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323953923|gb|EGB49722.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323962596|gb|EGB58175.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323964722|gb|EGB60193.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323973536|gb|EGB68722.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324005988|gb|EGB75207.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 57-2]
 gi|324018984|gb|EGB88203.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 117-3]
 gi|324117582|gb|EGC11488.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326342771|gb|EGD66541.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1044]
 gi|326346376|gb|EGD70113.1| Nitrate/nitrite response regulator protein [Escherichia coli
           O157:H7 str. 1125]
 gi|327253913|gb|EGE65542.1| response regulator [Escherichia coli STEC_7v]
 gi|330911087|gb|EGH39597.1| nitrate/nitrite response regulator protein [Escherichia coli AA86]
 gi|331055520|gb|EGI27529.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA206]
 gi|331061047|gb|EGI33011.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA143]
 gi|331080342|gb|EGI51521.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           H299]
 gi|332092262|gb|EGI97339.1| response regulator [Shigella boydii 5216-82]
 gi|332094809|gb|EGI99853.1| response regulator [Shigella boydii 3594-74]
 gi|332098243|gb|EGJ03216.1| response regulator [Shigella dysenteriae 155-74]
 gi|332342806|gb|AEE56140.1| transcriptional regulator protein NarL [Escherichia coli UMNK88]
 gi|332757875|gb|EGJ88202.1| response regulator [Shigella flexneri 4343-70]
 gi|332759344|gb|EGJ89652.1| response regulator [Shigella flexneri 2747-71]
 gi|332760316|gb|EGJ90606.1| response regulator [Shigella flexneri K-671]
 gi|333005380|gb|EGK24898.1| response regulator [Shigella flexneri K-218]
 gi|333007556|gb|EGK27034.1| response regulator [Shigella flexneri K-272]
 gi|333019229|gb|EGK38516.1| response regulator [Shigella flexneri K-304]
 gi|333019641|gb|EGK38918.1| response regulator [Shigella flexneri K-227]
          Length = 216

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|239980315|ref|ZP_04702839.1| LuxR response regulator receiver [Streptomyces albus J1074]
 gi|291452180|ref|ZP_06591570.1| regulator [Streptomyces albus J1074]
 gi|291355129|gb|EFE82031.1| regulator [Streptomyces albus J1074]
          Length = 203

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 61/230 (26%), Gaps = 29/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R      +      L  ++ L+  +     +       G                +D 
Sbjct: 2   AIRILLAEDMHMVRGALVALLNLENDLEVVCEVGR-----GDEILPRALEFRPDIAIIDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +  S        L     L               +   + Y      
Sbjct: 57  DLPGIDGLTAAARLRES--------LPECRTLILTNLGRPGTLRRALSAHVSGYLLKDAP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +    R+I                          G D  LT RE E L  
Sbjct: 109 PQELAAAVRRVVAGHRVIDPQLA----------------LSAWDGADSPLTERETEVLRL 152

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++G    EIA  L +S  TV NY+ +++ K   + R  AI  A  ++ +
Sbjct: 153 VAQGWEPSEIAKELHLSAGTVRNYLTTVVSKLNARNRVDAIRIAQASDWL 202


>gi|300024629|ref|YP_003757240.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526450|gb|ADJ24919.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 20/227 (8%)

Query: 17  EQRTSFVSHLPTRSDLLAR-MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
             R   V   P   + L R ++           +      + A+  +L     F    LD
Sbjct: 4   PARILIVDDHPLFVEALQRAIVGACPDTETHDAV-----SIDAAKKVLESKTPFDIVLLD 58

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +     F+ +  +           L                           + S + 
Sbjct: 59  LALPGTRGFEGLLELRKLH-----PSLPIVVVSAL---EDPRIVQDVMRYGAAGFISKSA 110

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           D + I   L  +      + +                 ++      +   LT +++  L 
Sbjct: 111 DRSEIASALKDVMEGSLTLPKGYKP------PEAPTNAEARGDLVHRLKMLTPKQLSVLR 164

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +G  + +IA  L I   TV  +++ I+RK    +R+ A+  A +
Sbjct: 165 MLRQGLLNKQIAHELQIEETTVKAHVSEILRKLNVSSRTQAVIEAQK 211


>gi|325915320|ref|ZP_08177640.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538513|gb|EGD10189.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas vesicatoria ATCC
           35937]
          Length = 212

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 76/235 (32%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A+++      + +  + +             
Sbjct: 1   MADLTILVADDHPLFRAAVIHVLQQTLPQAQVVEASSATTLSAMLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSTPADTIGTAVASVLDGGTWFPP-----------MTAERSEADAQLASKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 202


>gi|325291875|ref|YP_004277739.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325059728|gb|ADY63419.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 216

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +       +    +  D    ++      +                    
Sbjct: 1   MSELVIIIADDHPLFRGALKQAVSGLDGQQTIMEAGDFEAARSAA--------------T 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD  +     F  +  +          ++                      
Sbjct: 47  ACNDADLMLLDLAMPGVSGFSGLMALRAE--FSSLPIVIVSAT------DDATTVRRSIE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR G+  +      I      E                   G+  
Sbjct: 99  LGASGFISKSSGIDDIRDGIRAVLEGDVWIPASCQGE--------KEHDPDVADLIGRLR 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   L  ++EG  + +IA  L +S  T+  ++++I+ K    +R+ A+ 
Sbjct: 151 TLTPQQSRVLGMLAEGLLNKQIAYALNVSEATIKAHVSAILLKLKVDSRTQAVI 204


>gi|219664363|gb|ACL31213.1| two-component system putative response regulator [Rhodococcus sp.
           TFB]
          Length = 206

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 72/239 (30%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I +  +     S +  +   +     +            +  L               
Sbjct: 2   ISIAVCDDHGIIRSGIQRILETTKDFHLVASSSTGEHLLQTLRDL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  ++     DL++        +   +      +   +++         A   
Sbjct: 47  KPELLVLDIRLTDCNGLDLLK--------QISAISPETRVVMLSMYNAKGYVEKAKARGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +      +                +  +S +        L+
Sbjct: 99  RGYITKECLDEELLAVLYAVMKDEGFVSFRA------------DTTESENPLEANIDSLS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L  I+ G T+ EIA  L +S  TV ++ ASI RK   +TR+     A    ++
Sbjct: 147 SRELEVLKLIASGLTNTEIAEGLTVSSRTVESHRASIQRKLLLRTRAELARVARDAGLL 205


>gi|254505671|ref|ZP_05117817.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
 gi|219551324|gb|EED28303.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16]
          Length = 222

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGK 201
           + LL      I+ D +W    +A      F+  +          LT RE E +  +  G 
Sbjct: 114 ISLLIKGMEKIMNDEMWLSRKVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGA 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++ +IA  L +S NTV  ++ +I +K   K R  A+ +A
Sbjct: 174 SNLQIADELFVSENTVKTHLHNIFKKINAKNRLQALLWA 212


>gi|188578297|ref|YP_001915226.1| transcriptional regulator LuxR/uhpA family [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522749|gb|ACD60694.1| transcriptional regulator LuxR/uhpA family [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 218

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 7   MADLTILVADDHPLFRAAVLHVLQQTLPQANVVEASSAATLSAMLRS------------- 53

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 54  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 105 FGAAGFIPKSTPAESIGTAVASVLDGGTWFPP-----------MTAERSEADAQLASKLA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 154 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 208


>gi|73539665|ref|YP_300032.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72123002|gb|AAZ65188.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 214

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 66/238 (27%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V      +  +  +       + T  +  +               
Sbjct: 3   IRVIVADDHPLIIFGVRQALASAPGIRVVADAPDPGALTELLRNV--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D +  +                 +   +       ++      
Sbjct: 48  PCDVLVTDFSMPCGATPDGLAMLTSLR-----QRFPHVRVVVLTMLENAGLMVSMQDVGV 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               +   D++ +   +   F + R++      ++       +    +         +L+
Sbjct: 103 LGIVNKRDDLSELPAVIAAAFRRRRLLSTSVHEDLRQWEHQMSQRHAAR--------QLS 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +     G ++ E+A  L  S NT++    + MRK      +    YA ++ +
Sbjct: 155 PRETEVVRMYVNGMSTSEMARHLHRSINTISTQKTNAMRKLGVSNDAELFDYAQKHGL 212


>gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 514

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 79/251 (31%), Gaps = 18/251 (7%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E ++      R+ E+R +    +      +A  I             A     G + 
Sbjct: 254 MDLEPRKQAERALRQSEERFATAFRMAP----VATAIVTADRFELLDVNGAFAAMTGHAQ 309

Query: 61  FLLVRWDLFQEQKLD-----SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
             L+     +            + +    D     A  +       ++       PV   
Sbjct: 310 DDLLGKSADEIGLWAERGAWQRIENRLARDGNVRNADVQIRTREGDVRDCVVSADPV--- 366

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                    G D    +L     R R  + L++     +     +   L+         +
Sbjct: 367 ------AIHGRDCLLVALLDISDRKRTEMELVYAIETAMQDASWFSRTLIEKLANVRRAN 420

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +  +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  
Sbjct: 421 APDAGAQLSDLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGE 480

Query: 236 AIAYAVRNNIV 246
           AI +A    IV
Sbjct: 481 AIVWARERGIV 491


>gi|42523311|ref|NP_968691.1| LuxR family transcriptional regulator [Bdellovibrio bacteriovorus
           HD100]
 gi|39575517|emb|CAE79684.1| putative transcriptional regulator, LuxR family [Bdellovibrio
           bacteriovorus HD100]
          Length = 129

 Score = 91.5 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           L+ RE E    +S+G ++ E+A  L ++  TV  ++ +I +K   K+R+  I + +
Sbjct: 11  LSNREAEVAELVSKGLSNKEVANQLFVTEKTVKFHLTNIYKKMNVKSRAQLIVWCL 66


>gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 36/244 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYA-----LTEYVGASHFL 62
           + ++L   +E     +  L +    +  +              A     +     +  F 
Sbjct: 1   MKLILADSNEIIRIGLRTLLSTERNIQIVGEARNNEELIALNKAFDANIILVDYTSKGFS 60

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +       ++K D  V +  P                               +    +  
Sbjct: 61  IDVIPQILQKKPDLSVVAITPEQ-----------------------------SAQTLVNA 91

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y     D + I   +   +   +      L  I   +    +    ++    +
Sbjct: 92  LRSGVKSYIKKDCDSSEIIDSIRETWRGNKFFCGQILETIRDASIDVND--IDFESFSCE 149

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +T ISEG T+  IA  L +S +T+N +  +IM K   K  +G + YAV+
Sbjct: 150 PITLSERETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAGIVIYAVK 209

Query: 243 NNIV 246
            N+V
Sbjct: 210 TNLV 213


>gi|307308356|ref|ZP_07588061.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306901157|gb|EFN31764.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 213

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 65/225 (28%), Gaps = 32/225 (14%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSD 81
           DL   +  +D   S+   +  L    G    L    D               LD  +   
Sbjct: 3   DLEPIVHIVDDDQSFRTAVGRLLAASGFRVALYESGDQFLAQFADGEPGCVLLDLGLPGL 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L   +A                +F      +   +         +         + 
Sbjct: 63  NGLELQDRLAEKA--------PLLPIVFLTGRGDIRATVQAMKAGAEDFLEKPTPKEVLL 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +     +  +   ++  +  L                 +   LT RE E    I  GK
Sbjct: 115 ETIGRALRRYALRRLEQDRKHAL---------------RRRLANLTPREFEVFGLIVRGK 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA  LG S  TV  +  ++M K  T++ +  ++ A R  +V
Sbjct: 160 LNKQIAQALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLGLV 204


>gi|241207011|ref|YP_002978107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860901|gb|ACS58568.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 260

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI----GLLAAYQAN---- 171
               A + +    L   +      + LL   G       L  +      L          
Sbjct: 112 RLVEARIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPSALLNRLTNNNAQLEPSLYQTKSV 171

Query: 172 ---MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                 +  +       LT REV+ L  I +G  +  IA  L +S NTV  ++ +I +K 
Sbjct: 172 DAARSNALKLRRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKM 231

Query: 229 ATKTRSGAIAY 239
             + R+ A + 
Sbjct: 232 NVRNRTEAASR 242


>gi|218708362|ref|YP_002415983.1| transcriptional regulator [Vibrio splendidus LGP32]
 gi|218321381|emb|CAV17331.1| transcriptional regulator [Vibrio splendidus LGP32]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+
Sbjct: 149 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 208

Query: 240 AVRN 243
           A +N
Sbjct: 209 ANQN 212


>gi|209520725|ref|ZP_03269474.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|295676955|ref|YP_003605479.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
 gi|209498850|gb|EDZ98956.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|295436798|gb|ADG15968.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 66/218 (30%), Gaps = 36/218 (16%)

Query: 39  LDCTVSWTMRMYALTEYVGA--------SHFLLVRWDL-----FQEQKLDSIVSSDWPFD 85
           +D   +    +  L E  G           FL                LD  +S     +
Sbjct: 14  VDDDEAVRDSLRWLLEANGYRVQCFLSAEQFLDAWQPHQHPGQIACLILDVRMSGMSGLE 73

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L   +                 +F      +P  ++        +    FD A +R  + 
Sbjct: 74  LQERLIADN--------ASLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVE 125

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  K R                     +       +  +LT RE + L  I  G+ + +
Sbjct: 126 RMLDKARSESTSV---------------QQQRAAAERLGKLTAREHQVLERIIAGRLNKQ 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IA  LGIS  TV  + A+IM K    T +  +  A+ N
Sbjct: 171 IADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSN 208


>gi|184201100|ref|YP_001855307.1| putative two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581330|dbj|BAG29801.1| putative two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 217

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  ++        +  +         + +   L  EQ +D ++   +         +   
Sbjct: 10  LALINDYPVVVEGVAHMLRRHPRLDVVELDSGLLPEQDVDVVLYDAFAATGRGTRDVMRL 69

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                  +     +     +        A   + + S       +   L+ +    R++ 
Sbjct: 70  LGEARFRRVVMYTWNV---SAQRVDEALAMGMDGFLSKELSAQELGDALVRVHEGERVVE 126

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
            + + E             +     G+   L+ RE E +  I++G T+DEIA    +S N
Sbjct: 127 PEPVRE-----------DVTPPDWPGRRTGLSAREAEVIALITQGFTNDEIARNCYLSIN 175

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +V +YI S  RK   + RS A+ + V++ +
Sbjct: 176 SVKSYIRSAYRKMGVERRSQAVLWGVQHGM 205


>gi|148977874|ref|ZP_01814429.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145962943|gb|EDK28214.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 203

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+
Sbjct: 137 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 196

Query: 240 AVRN 243
           A +N
Sbjct: 197 ANQN 200


>gi|160873477|ref|YP_001552793.1| two component LuxR family transcriptional regulator [Shewanella
           baltica OS195]
 gi|304411702|ref|ZP_07393314.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|307306246|ref|ZP_07585991.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|160858999|gb|ABX47533.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS195]
 gi|304349890|gb|EFM14296.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS183]
 gi|306911119|gb|EFN41546.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica BA175]
 gi|315265706|gb|ADT92559.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS678]
          Length = 198

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L++   F     D  +      +L   +             +   +    F   
Sbjct: 34  GDEALGLLKQQSFDLLLTDIEMPGRTGLELAAWLKDQHS--------QTKVVVITTFGRA 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +         +   +  +    R+I      E+ ++A          
Sbjct: 86  GYIKRAIEAGVGGFLLKDAPSETLVNAIQQVMAGKRVIDP----ELAMMAI--------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    L  +E   L   SEGK++ +IA  L I+  TV NY++  + K     R  A
Sbjct: 133 ----GDVDPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDA 188

Query: 237 IAYAVRNNIV 246
              A +   +
Sbjct: 189 ARIAKQKGWL 198


>gi|332991726|gb|AEF01781.1| two component LuxR family transcriptional regulator [Alteromonas
           sp. SN2]
          Length = 219

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 18/224 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           QR   +   P     +  ++      S T+   +L+E +     +L     F    LD  
Sbjct: 2   QRILIIDDHPIFRHAMVTILGKKFPDSQTIEANSLSEALE----VLEADAAFDLVMLDLN 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +  +           L           H + + I+        + S +  +
Sbjct: 58  MPETCGLNGLLEIRNQH-----PNLPVVIISAETEKHNILQTISY---GAVGFISKSSKI 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTGREVECLTW 196
             I   +  +F     +  + L           N  K  D     +   LT +E+  L +
Sbjct: 110 EEIATSVESIFEGNVCLPSEILRTSST-----RNRVKKEDAISLDQIRSLTRKELAVLKY 164

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +++G  +  IA  L IS  TV ++++SI++K     R   +A A
Sbjct: 165 LTQGLANKVIAYELNISETTVKSHVSSILKKLGASNRVKVVASA 208


>gi|323977206|gb|EGB72293.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +  +I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPASILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|269794456|ref|YP_003313911.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269096641|gb|ACZ21077.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 224

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 73/237 (30%), Gaps = 36/237 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + + +++++  + E     ++ +  RS+ ++ +           R              
Sbjct: 8   LQTESISVMIVDDHEVVRRGIAEVIDRSEGMSVVAEAGSVAEGVRR-------------- 53

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                  Q   +D  +      DL+R +  ++             +    F         
Sbjct: 54  -ASLVHPQVMLVDLQLPDGTGIDLMRSVRATQ--------PETRAIVLTSFDDDSALAAA 104

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   +   A I   +  +     ++    +                   H   
Sbjct: 105 LEVGAAAYVLKSVRGAEIADVVRAVAAGRVLLDERTITR-------------RRREHDDP 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +LT  EV  +  I EG ++ EIA  L I+  TV N+I S++ K   + R+   A+
Sbjct: 152 TEDLTPSEVRVVDLIGEGLSNREIAERLSIAEKTVKNHITSLLAKMGLQRRTQVAAW 208


>gi|239996407|ref|ZP_04716931.1| two component LuxR family transcriptional regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 219

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 14/215 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           + R++ +D    +   M  +        E + A+        L Q+ K D I+      +
Sbjct: 1   MHRILIIDDHPIFRHAMITILGKKFPDSETLEANSISEALTLLEQDAKFDLIMLDLNMPE 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                 L E    +  +             + + I+        + S +  +  I   + 
Sbjct: 61  TCGLNGLLEIRNQHPNVPVVIISAETEKQNILQTISY---GAVGFISKSSKIEEIATSIE 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +F     +  + L           +   S +        LT +E+  L ++++G  +  
Sbjct: 118 SIFEGNVCLPSEILRTPSTRTRMTNDNGISPEQIRS----LTRKELTVLKYLTQGLANKV 173

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  L IS  TV ++++SI++K     R   +A A
Sbjct: 174 IAYELNISETTVKSHVSSILKKLGASNRVKVVASA 208


>gi|32967994|gb|AAP92509.1| transcriptional regulator [Streptomyces vinaceus]
          Length = 236

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 66/213 (30%), Gaps = 6/213 (2%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++  +    +   ++ L   +  +  +    D  +     + +S D        +    
Sbjct: 19  RILLAEDRDVYREGLFVLLSEIANAEVVGTAVDRKELVHQSTRLSPDVVVAGTSLVLPDG 78

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENI--TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                 + +  +           + +     A   + Y  L+         +  +   G 
Sbjct: 79  LPALSRLPEAVSGNTVMAAERDTDELLSAALAAGVHGYVPLSSPREDFDAAIQAVAAGGG 138

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
            +       +                   +   L+ RE + L  + +G+++ EIA  L +
Sbjct: 139 FLPTHVTRRLVRNFHLVPRR----TDRPAELELLSEREQQVLLLVGDGRSNREIARTLRV 194

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV ++++ ++ K   + R  A     R  +
Sbjct: 195 SEATVKSHVSRVLAKLELRDRVHAAQLVWRLGL 227


>gi|86147858|ref|ZP_01066164.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|85834385|gb|EAQ52537.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+
Sbjct: 149 TPTNVDLTIREIQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 208

Query: 240 AVRN 243
           A +N
Sbjct: 209 ANQN 212


>gi|312883206|ref|ZP_07742935.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309369129|gb|EFP96652.1| DNA-binding HTH domain-containing protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 217

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +     G      S    +  I  G   +      + R    +  LL  Y          
Sbjct: 93  DELLAFGHLKGIFSQNAAIDDIARGCEGIINGENWLPRKV--DAQLLFYY---RSVVETQ 147

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE++ L  +  G ++ +IA  + IS  TV +++  I +K + + R  A A
Sbjct: 148 TAPATVDLTAREIQILRCLMIGASNTQIAEDMFISEFTVKSHLQKIFKKLSVRNRVQAAA 207

Query: 239 YAVRN 243
           +A ++
Sbjct: 208 WAKQH 212


>gi|301301409|ref|ZP_07207547.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300850961|gb|EFK78707.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 29/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                   +  LA ++ L+   S        TE  G +    V         LD  +   
Sbjct: 6   LAEDQQMLNSALAMLLDLEDDFSVVG-----TETDGQAALEKVITLKPDVAILDIEIPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++ + + L + D           +    F          A   N Y         + 
Sbjct: 61  SGLEIAKQLRLMKLDI--------KIIILTTFARSKYFKDALAARVNGYLLKDSPSNSLV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             + ++     +                 ++  + D        LT RE E L  +    
Sbjct: 113 NAIKIIMNGDTVFDP----------KLVTSVLNTVDNP------LTDREQEILAALKTCA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ E+A    +S  T+ NYI+SI+ KT T++R  A+  A + N +
Sbjct: 157 STKELAQKFFLSEGTIRNYISSILSKTGTRSRLEAVNLAEKRNWI 201


>gi|288962652|ref|YP_003452946.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914918|dbj|BAI76402.1| two-component response regulator [Azospirillum sp. B510]
          Length = 194

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 9/144 (6%)

Query: 104 RPTELFCPVFHTLPENI---TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
              +    V  +  +            + +      +  +   L L+     +       
Sbjct: 52  ACPDTHVVVLTSTLDAEIMTKAIQAGADGFLMKDMSMEALAQSLRLVMIGETVFPS---- 107

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
              L A    +              ++ RE + L  +  G ++  IA  L I+  TV  +
Sbjct: 108 --ALAALLIGSRLNGVADLAVLHKGVSKREAQVLRCLQNGSSNKTIANHLRITEATVKLH 165

Query: 221 IASIMRKTATKTRSGAIAYAVRNN 244
           + S++RK     R+ A  + + N 
Sbjct: 166 LKSLLRKINVSNRTQAALWGLNNG 189


>gi|240141165|ref|YP_002965645.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254563677|ref|YP_003070772.1| two-component LuxR family transcriptional regulator
           [Methylobacterium extorquens DM4]
 gi|240011142|gb|ACS42368.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens AM1]
 gi|254270955|emb|CAX26960.1| putative two-component transcriptional regulator, LuxR family
           [Methylobacterium extorquens DM4]
          Length = 234

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 72/244 (29%), Gaps = 26/244 (10%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              ++V + L  +     S V  L   +  +  +                    G     
Sbjct: 1   MAKERVRVALIDDHPIFRSGVRGLLGETAGIEVVGEASD---------------GRHALD 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           LV         +D  ++      + R +       +         +F  V   L      
Sbjct: 46  LVLRTKPDVVIMDITMTGMSGLAVARALREVGSAVH--------IVFLTVNEDLAFVDEA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y         +   +  +   G+ +  +        A            H G+
Sbjct: 98  LTAGAQGYVLKRSAGTSLLEAIEAVVLGGQYVDAEMR---APPAPPDRTEAGPPAPHPGQ 154

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  I+ G T  E+++ + IS  +V+ Y     +K   ++R+  + +A+ 
Sbjct: 155 EGGLTAREREVLRLIALGMTMKEVSLAMSISAASVDTYKIRGCKKLGLRSRASIVRFALG 214

Query: 243 NNIV 246
              +
Sbjct: 215 QGWL 218


>gi|152988745|ref|YP_001346546.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150963903|gb|ABR85928.1| fimbriae Z protein [Pseudomonas aeruginosa PA7]
          Length = 209

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 34/239 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWD 67
            +++  +       V  L  +                   +  + E   G     LVR  
Sbjct: 3   TVLIVDDHPVIRLAVRVLLEKH-----------------GLQVVAETDNGVDAIQLVREH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++  +   E      VL   ++                    
Sbjct: 46  EPDVVILDIGIPKLDGLTVISRIKSLEL--RSQVLVLTSQSAEAF------CKRCIQVGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   D+  +   L  +              +G                      L+
Sbjct: 98  RGFVNKEEDLGNLINALNAVTAGYTFFPSLTFDTLGT--------PPERISESELIGLLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G ++  I   L +S  TV+ Y   +++K    +      +A RN+++
Sbjct: 150 DREMIVLQHLAMGYSNKAIGEKLFLSNKTVSTYKTRLLQKLGLGSLVDLAEFAKRNSLI 208


>gi|300725937|ref|ZP_07059399.1| transcriptional regulator [Prevotella bryantii B14]
 gi|299776788|gb|EFI73336.1| transcriptional regulator [Prevotella bryantii B14]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                  +  I   +M      R I +  + E+ L++       +  +        LT  
Sbjct: 100 VLLKESSLPEIHEAIMFAMRNHRYICQR-MTEMLLVSREVTPEKEQIN--------LTKT 150

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I+ G T+ EIA     S +TVN +  +I RK        A  YA+R  +V
Sbjct: 151 EIEILKDIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLNVNNVHEATKYALRAGLV 207


>gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426]
 gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 500

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE+E L  ++EG ++ E A  L +S  TV +Y+++I++K   K R+ A
Sbjct: 431 SDLVQPTPHLSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTEA 490

Query: 237 IAYAVRNNIV 246
           I  A+R+ I+
Sbjct: 491 IVKAIRDGII 500


>gi|284993187|ref|YP_003411742.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066433|gb|ADB77371.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 59/225 (26%), Gaps = 24/225 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +  L    + L R                     GA    + R  +     LD  +   
Sbjct: 1   MIRVLLADDENLIRSALAALLALEEDLEVVAQAASGAEALAMARAHIPDVAVLDLQMPDR 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +   +A         VL     +                     +   T     + 
Sbjct: 61  DGISVAGELAT--------VLPGCAVVIVTGHGRAGHLKRALEAGVRGFLPKTVGAPVLT 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +   GR +  +   E                     D  LT RE + L   + G 
Sbjct: 113 DVVRTVHRGGRYVDPELAAE----------------AISAGDSPLTPREADVLELAAGGA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +EIA    +S  TV N++++   K     R  A+  A R+  +
Sbjct: 157 PVEEIAARAHLSPGTVRNHLSAAAVKLGAPNRHAAVEAARRHGWI 201


>gi|320009300|gb|ADW04150.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 217

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + +  + + +D +  +                    G     + R  
Sbjct: 2   IRVLVTDDEPLIRAGIRMILSSADDMEVVAEAAN---------------GREAVDIARSQ 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +        +  +  S              L    F      +       
Sbjct: 47  RVDVALLDIQMPVMDGLTALAELRRSA--------PEVRVLILTTFGERQNVLRALGAGS 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A +   +         +       +   +          +    +  +LT
Sbjct: 99  AGFLLKDSAPAELMRAVRAAAAGEAYLSPGATRHVVD-SLASGGTADRAERARRRLEKLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + LT + EG ++ +    + +S  TV  Y++ I+ K     R  A   A    +
Sbjct: 158 VRERDVLTLLGEGLSNADAGQRIHMSEATVKTYVSRILAKLECDNRVQAALLARDAGL 215


>gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
 gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366]
          Length = 151

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  RE E L  +++G ++ EIA  L IS +TV  +++++  K   K+R  A+  A R  I
Sbjct: 90  LNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRIKALEKAKRLKI 149

Query: 246 V 246
           +
Sbjct: 150 I 150


>gi|87302655|ref|ZP_01085472.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701]
 gi|87282999|gb|EAQ74956.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701]
          Length = 237

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 117 PENITPPAGMDNRYCS-LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           P          +  C+        +      +   G  +    L ++  LA   +     
Sbjct: 108 PLVRAALEASCDGICADRGVGFGHLVAATRAVLGGGFYMEPQ-LRDLLALACRASRDPAG 166

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE+E L  + +G  + +IA  + +S  TV +++ S  +K     R+ 
Sbjct: 167 PG--------LSARELEVLELVVQGYQNPQIASRMHLSVETVRSHLKSAFQKLGATGRTH 218

Query: 236 AIAYAVRNNIV 246
           A   AV   +V
Sbjct: 219 AAVMAVCQGLV 229


>gi|315649953|ref|ZP_07903033.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
 gi|315487723|gb|EFU78026.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
          Length = 222

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 20/225 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
               +   P     L  +I L      T++   + E +      L R        +D  +
Sbjct: 1   MVLVLDDHPIARQGLESIIKLHKPEEETVQAGTVKEAID-----LAREKSIDSVFVDLNL 55

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           +++  FD +  +     DK     +           +  + +       + Y      V 
Sbjct: 56  NNESGFDFLEWIQNQNHDKN----KNIKTFVITSSSSEIDFMKAKNMGIDAYILKDAFVD 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I  GL ++   G+    D +  +G           +      K   LT RE+E    + 
Sbjct: 112 DIVYGLKVVDRGGKFYSSDLMANVG-----------NTSDEEKKIDTLTRRELEVALLLR 160

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           EG ++ ++A IL IS  TV  +I++I  K    TR+  + +  ++
Sbjct: 161 EGYSNAKLANILSISEGTVKKHISNIFSKLEIYTRTEVLVFVEKH 205


>gi|304439372|ref|ZP_07399284.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372154|gb|EFM25748.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 208

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K  +LT RE++ L  ++ G  +DEIA  LGIS NTV  +I  ++ KT   +R+     A 
Sbjct: 140 KSTDLTPREIQVLRLLTTGVGNDEIAESLGISLNTVKTHIQHLLDKTGFTSRTQLAIQAR 199

Query: 242 RNNIV 246
               V
Sbjct: 200 VTGFV 204


>gi|300821006|ref|ZP_07101155.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 119-7]
 gi|331667607|ref|ZP_08368471.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA271]
 gi|300526305|gb|EFK47374.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           MS 119-7]
 gi|331065192|gb|EGI37087.1| nitrate/nitrite response regulator protein NarL [Escherichia coli
           TA271]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPAITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|299065276|emb|CBJ36444.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum CMR15]
          Length = 234

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 17/233 (7%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R + V   P   D L + +     +  T    +  E +     LL+         +D  
Sbjct: 13  IRVAIVEDDPGFLDALTQALACAPDMHLTGVAGSRAEGL-----LLLDGAPADVLLVDLG 67

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++   A           +  + +    F      +         Y       
Sbjct: 68  LPDGSGIDVIEAAARKW--------RACSIMVSTNFGDEIHVMRSIEVGAAGYLLKDSSA 119

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN----MFKSYDVHWGKDFELTGREVEC 193
           ARI   +  L   G  I          + A                      L+ RE E 
Sbjct: 120 ARILDEIRSLAGGGSPISPISPIIARQILARFRQGGSRSAADEAPASVSSPLLSAREKEV 179

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  I++G T+ EIA ++ +S  TV  ++  I  K    +++ AI  A    ++
Sbjct: 180 LDLITKGFTAQEIAKLMELSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLL 232


>gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319]
 gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551]
 gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319]
          Length = 74

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|222081230|ref|YP_002540593.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725909|gb|ACM28998.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 897

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 3/215 (1%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           A  I  D    + + +      +  +   L + ++ + +     +      +L       
Sbjct: 683 AESISSDTANDFAVNLRGNVPALLWTRIYLAQGEIARARSTFDRLIKCQSREL-HVPRRI 741

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG-- 151
           E       L             L E +      D R   L       R    L   +G  
Sbjct: 742 ELGFLDIRLLLAEGDEATAAARLSEMMLSLPVADYRAILLIEGPEFGRRLCQLAASRGVP 801

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++++       ++A   A       V       LT RE   L  +S G ++ EI   L 
Sbjct: 802 DVVMQRLERLQDVVAGASAQDSDLLSVPTAATGGLTDRERSVLRLLSAGLSNKEIGRKLD 861

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S NTV  ++ +I  K    TR+ A+  A    I+
Sbjct: 862 LSNNTVKFHLRNIYAKLNVTTRTAAVTMARDTGIL 896


>gi|209886246|ref|YP_002290103.1| transcriptional regulatory protein FixJ [Oligotropha
           carboxidovorans OM5]
 gi|209874442|gb|ACI94238.1| transcriptional regulatory protein FixJ [Oligotropha
           carboxidovorans OM5]
          Length = 205

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 40/240 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  + +  +D      +  L   +   AR+   +  VS+   + AL              
Sbjct: 4   EGTVYVIDDDPAMRDSLDFLLDAAGFEARL--FESAVSFLAALPALG------------- 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  + +    +L+R +  +         +    +       +P  +      
Sbjct: 49  --PGCVVSDVRMPNLDGIELLRRLKETN--------KPFPIIIMTGHGDVPLAVEAMKLG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +    F+  R+   +                     AA +            +   L
Sbjct: 99  AIDFIEKPFEDDRLIGTIKAALSS---------------AAQRHKGEAVTADIASRIASL 143

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + +  +  G ++  IA    IS  T+  Y A++M K    + S  +  A+R  ++
Sbjct: 144 SPRERQVMEGLVAGLSNKLIARNYEISPRTIEVYRANVMTKMQASSVSELVRLAIRGGLL 203


>gi|126439631|ref|YP_001058659.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126219124|gb|ABN82630.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 61/223 (27%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    ++ +   ++    +  + E    A    L+          D  +     
Sbjct: 4   QVLIADDHPLVLLGVRHMLAGMGDVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPA 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +                 +   +        T          S   D+  +   
Sbjct: 64  ADGLAMLTAIRDGYPS-----VRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDELPRA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  ++                +  +      +         +L+ RE+E +   + G T 
Sbjct: 119 LAAVYQGRP-----------FVGTHAGAAGGAAARGTDAPRQLSPREIEVVRLCATGMTM 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA   G S  TV+ +  + M K   K+      YA  N +V
Sbjct: 168 TDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATENGLV 210


>gi|329847281|ref|ZP_08262309.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328842344|gb|EGF91913.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 199

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 27/220 (12%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ ++        + +L E       VG +    V  D+  + + D +VS     D+
Sbjct: 1   MIRILVVEDQALVLGAIASLLELENDFTVVGTAPNGRVALDMMADCRPDLVVSDIEMADM 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     +               F          A     Y         +   +  
Sbjct: 61  GGIDLALHLQRVAPGTAVVMITT---FARPGYLQRALAAGVRGYLLKDTPSRELAQIIRR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    ++I                               L  R+ E L    +G ++  I
Sbjct: 118 VMAGEKVIDP------------------QLGDLSQTGDPLNDRDRELLRLAEQGHSNKAI 159

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A +L  +  T+ N+++ +++K     R  A   A +   +
Sbjct: 160 ARMLDKAPGTIRNHLSEVLQKLNAVNRIDACRIARQMGWL 199


>gi|229820080|ref|YP_002881606.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229565993|gb|ACQ79844.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++      V+ L    + +  +               +               
Sbjct: 2   IRVLLADDETLIRDAVATLLGLEEDIEVVAVASSGTEAIAACERV--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      ++ + +A          +     +                   
Sbjct: 47  RPDVAVLDLQMPGADGIEVAQAIA--------PTVPDCAVVIVTSHGRPGYLKRALTVGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T   A +   +  +   GR +  +                   D     +  LT
Sbjct: 99  RGFLPKTASAAVLASVVRQVRDGGRYVDPELAA----------------DAIAAGESPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L   +EG   +EIA    ++  TV NY++S + K     R  A   A     +
Sbjct: 143 PREADVLELAAEGAPVEEIARRAALAPGTVRNYLSSAVAKLGASNRHEAARLARARGWL 201


>gi|238898715|ref|YP_002924396.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466473|gb|ACQ68247.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 235

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 65/190 (34%), Gaps = 19/190 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------- 127
              + S+ P +               V+ +               I+    +        
Sbjct: 40  HICIISNCP-EWFDIYLEFNHQLIDPVVIKALSRVEDFEWDENILISSKLALPKVLDQAK 98

Query: 128 -----NRYCSLTFDVARIRIGLMLLFPK-----GRIILRDRLWEIGLLAAY-QANMFKSY 176
                  +  +  D  +    L +   +        I R++++ + +       ++++ +
Sbjct: 99  TYDISRGHTFVLHDYKQNLAILSIFDDRPLKTNDFFIDREKMYLLLVKTHQKLLSLYEKF 158

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K+  L+ RE E L W S GKT  EI+ I+GI   ++  ++ +I  K        A
Sbjct: 159 EIPTKKNIGLSKRENEILHWASIGKTYQEISKIIGIKECSIKFHMKNITNKLGAINSRHA 218

Query: 237 IAYAVRNNIV 246
           I  A    ++
Sbjct: 219 IKLAYELKLL 228


>gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1]
 gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 530

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAA 167
             +               + Y     +    R+ L       R+    R   +    +AA
Sbjct: 383 RGIAGAELTAKDRLLAAADAY-QRLLEPRPHRLALDPRGAADRLKEEARTGRLDAESVAA 441

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             A   +           LT REVE L  +++G+++ EIA  L I+  T  N++  +  K
Sbjct: 442 VLAAAGQRVSRRTPWPAGLTDREVEILRLVAQGRSNREIAADLFIAEKTARNHVERVYAK 501

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+ A   A+   +V
Sbjct: 502 LGVNNRTQASLAAIDRGLV 520


>gi|15966696|ref|NP_387049.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15075968|emb|CAC47522.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021]
          Length = 237

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-------LAAYQANMFK 174
              GM +    L   +      + LL   G       L  +         LA       +
Sbjct: 89  VEEGMIHGVLPLNLHLDVCLTAIDLLMKGGEHFPAALLRRLAPKNPGERDLATRNETASE 148

Query: 175 SYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
           + D    K F    LT RE++ L  I  G  +  IA  LG+S NTV  ++ +I +K   +
Sbjct: 149 NVDPERRKGFGQVVLTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVR 208

Query: 232 TRSGAIAYAVRN 243
            R+ A +   RN
Sbjct: 209 NRTEAASRYFRN 220


>gi|328950846|ref|YP_004368181.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451170|gb|AEB12071.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 192

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 57/222 (25%), Gaps = 31/222 (13%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D     + +                 G                LD  +      
Sbjct: 2   RLLIADDHPLFRLGIKAVFEKQGFEVVGEAANGLEAVQQTLRLDPDAVLLDVKMPLLDGI 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              + +                 +    F              + Y S     A +   +
Sbjct: 62  GAAKKLREEGYT--------GLIVMLTTFTEPALQHQAAEAGADAYLSKEVSPAELARRV 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + L                          ++         ELT RE E LT ++ G T+ 
Sbjct: 114 LDLAEG-----------------------RAGRFVPPPVPELTAREREVLTLLARGMTAK 150

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  L +S +TV +++  +  K   + R  A+  A +  ++
Sbjct: 151 EMARYLNLSPDTVRDHLKRLYGKLDARGRVEALVRARQLGLI 192


>gi|307565431|ref|ZP_07627920.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
 gi|307345881|gb|EFN91229.1| transcriptional regulator, LuxR family [Prevotella amnii CRIS
           21A-A]
          Length = 200

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   ++ S   
Sbjct: 127 PAVLKNKLLSNREIEVLSLIVQGMINKEIADKLNISLTTVITHRKNIMDKLGMRSVSALT 186

Query: 238 AYAVRNNIV 246
            YAV +  V
Sbjct: 187 IYAVMHGYV 195


>gi|293394905|ref|ZP_06639195.1| response regulator protein [Serratia odorifera DSM 4582]
 gi|291422656|gb|EFE95895.1| response regulator protein [Serratia odorifera DSM 4582]
          Length = 210

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 24/216 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P  +  +A    L+    +       +E     H L       +      +V   
Sbjct: 8   VIDDHPLVASGIANF--LNTHCRFKRAYVVTSEESCYRHIL-------ENGAPRLMVIDF 58

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           W  D      L E  + Y  ++                        + +           
Sbjct: 59  WLSDGTALKLLKEIKQLYPKIRFLVVSGD---ENNEIGQKVRHAGGHGFVLKNQPPELFS 115

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L         D                     +  + F LT R++E LT +  G 
Sbjct: 116 QAVFALLENRTWFPEDNAT------------VADNSKNPLQQFNLTSRQLEVLTMMMRGF 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            + +IA+ L IS  TV  +I++I++K    +R  AI
Sbjct: 164 PNKKIALQLAISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|117926978|ref|YP_867595.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610734|gb|ABK46189.1| transcriptional regulator, LuxR family [Magnetococcus sp. MC-1]
          Length = 220

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 5/191 (2%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
             +                 +      +   DW     +    S        +     + 
Sbjct: 27  REMGRACTQQAGTAPTAFTVRSSLGSVLWIWDWQQSGDKERIFSLLSNQSGAVPLVLLIN 86

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P   +L   +           +    + ++   +  +        R  L   GL+    
Sbjct: 87  LPDDISLE--LRALQSGIRGVVTFDTPLEQLIRAVEAVERGELWFSRKTLTR-GLIERGP 143

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +       HW     +T RE E L  I+ G ++  IA  LGIS +TV  +  ++ RK  
Sbjct: 144 QSGTLPKRSHWPN--GITSREAEILRLITSGCSNKRIAYELGISLHTVKAHTYNLYRKID 201

Query: 230 TKTRSGAIAYA 240
              R  A  +A
Sbjct: 202 ASNRMDAANWA 212


>gi|308180746|ref|YP_003924874.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046237|gb|ADN98780.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ L    D L  +      ++    +  L               
Sbjct: 2   ITLYLAEDQSMLNSALTQLLELEDDLHVVGSAVDGINAWQELQEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +A S+             +    F              
Sbjct: 47  QPDVAILDIEMPGMTGLDVADRLAGSQL--------ATKVIVLTTFAQRRYFERAVKANV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     I   + +  +                    +  LT
Sbjct: 99  AGYLLKDSPSDDLIDAIRAVMTGRTIYAPELVTNM----------------LSADNNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L    +G  +  IA  L +S  T  NY+++I  K     R  AI  A  N  +
Sbjct: 143 ERELAVLVEAEKGLPTKTIAANLYLSAGTTRNYLSAIFSKLGVHNRLEAIHVAKANQWL 201


>gi|307708433|ref|ZP_07644899.1| SalR [Streptococcus mitis NCTC 12261]
 gi|307615532|gb|EFN94739.1| SalR [Streptococcus mitis NCTC 12261]
          Length = 198

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 44/238 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +  +  +  +   S+ + ++  +D                  S    + ++
Sbjct: 1   MKILLIDDHKLFSQSIKMILELSENIKKVQLVDN----------------FSTISEIAFN 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            +    +D  ++S +  D +        +           +    +          A   
Sbjct: 45  DYDIILIDINLTSLYQADGLTLAQEIIDNGCS-----SKVVILTGYSKKMYEHRAKAMGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D   +   L  ++  G+I   + + E+                       LT
Sbjct: 100 YGFLDKSMDPDELVKKLEKIYLGGKIFSDEVMVEV-----------------------LT 136

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A +   
Sbjct: 137 PREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQLGY 194


>gi|291085584|ref|ZP_06571117.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
 gi|291071350|gb|EFE09459.1| putative csgAB operon transcriptional regulatory protein
           [Citrobacter youngae ATCC 29220]
          Length = 159

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 48  NGVFYATEDEQRVVSGLQGVLRGECYFSQK-------LASYLITHSGNYRYNSTESAILT 100

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 101 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 153


>gi|297200745|ref|ZP_06918142.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197712315|gb|EDY56349.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 202

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 65/239 (27%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  ++      ++ L +  D LA +                    G     + R  
Sbjct: 3   VRLLLADDEHLIRGALAALLSLEDDLAVVAEAAT---------------GPEALAMARAH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +           L     L                   
Sbjct: 48  GPDVAVLDLQMPGADGVKVATSLRTE--------LPSCKVLIVTSHGRPGHLRRALEAGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T    R+   +  +    R +  +                   D     D  LT
Sbjct: 100 RGFVPKTVSAQRLAEIIRTVHAGNRYVDPELAA----------------DAISAGDSPLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G    EIA    +S+ TV NY++S + K   + R  A+  A     V
Sbjct: 144 VREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERGWV 202


>gi|317122922|ref|YP_004102925.1| LuxR family transcriptional regulator [Thermaerobacter marianensis
           DSM 12885]
 gi|315592902|gb|ADU52198.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter marianensis DSM 12885]
          Length = 259

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 61/245 (24%), Gaps = 36/245 (14%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     +       G      V+ + F    LD  +      
Sbjct: 3   RVLLADDQALVREGLRLLLELQGDLEVTAVADGTEAVERVQREAFDVALLDVRMPRMDGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +R +     D           L    F          A     Y         +   +
Sbjct: 63  TCLRRLRALRPD--------LPVLMLTTFGDDGLVRQCLAAGAAAYLLKDVPPEDLANAV 114

Query: 145 MLLFPKGRIILRDRLWEI----------------------------GLLAAYQANMFKSY 176
            L+   G +I  D    +                                          
Sbjct: 115 RLVVLGGGLIPGDLARSLVEGEGAGASPGQGGLPAPPGPAPAAAPRLPARRKAPGDGPPR 174

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        LT R+ E L  ++EG ++ EIA  L +S  TV N ++ I  +   + R  A
Sbjct: 175 DPRLDGPEPLTARQREVLELLAEGLSNREIAARLHLSEGTVKNVVSEIYARLQVRDRVQA 234

Query: 237 IAYAV 241
           +  A 
Sbjct: 235 VLRAR 239


>gi|254556805|ref|YP_003063222.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300768112|ref|ZP_07078017.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|254045732|gb|ACT62525.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300494176|gb|EFK29339.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     S ++ L    D L  +      ++    +  L               
Sbjct: 2   ITLYLAEDQSMLNSALTQLLELEDDLHVVGSAVDGINAWQELQEL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +A S+             +    F              
Sbjct: 47  QPDVAILDIEMPGITGLDVADRLASSQL--------ATKVIVLTTFAQRRYFERAVKANV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +   +  +     I   + +  +                    +  LT
Sbjct: 99  AGYLLKDSPSDDLIDAIRAVMTGRTIYAPELVTNM----------------LSADNNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L    +G  +  IA  L +S  T  NY+++I  K     R  AI  A  N  +
Sbjct: 143 ERELAVLVEAEKGLPTKTIAANLYLSAGTTRNYLSAIFSKLGVHNRLEAIRVAKANQWL 201


>gi|73537441|ref|YP_297808.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120778|gb|AAZ62964.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia
           eutropha JMP134]
          Length = 947

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 69/237 (29%), Gaps = 9/237 (3%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           +R         R      +        W  R    +         + R  L    +  + 
Sbjct: 712 ERARLALRQGNRHAAEEALQRAGDPALWRTRPGVSSFASDVEDITVGRLRLALHVEPTAQ 771

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPT-----ELFCPVFHTLPENITPPAGMDNRYCS 132
           V      +L      ++  +    L+                 +        G    +  
Sbjct: 772 VREAVERELAAA-VSNQLMRRALKLRILLAQAYQRTGDGAQALVVMAEALRFGAAEGFVR 830

Query: 133 LTFDVAR--IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGR 189
           +  D      R+       +G  +    +  +        ++  S         E LT +
Sbjct: 831 IFADEGDEVRRLVAQACARQGGNLPSAYVERLLGACGQGPDVAPSGQAAPAPLVEPLTPK 890

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  ++EG ++  +A  L +S  TV  ++ +I  K     R+ A+A A +  ++
Sbjct: 891 EQKVLQLLAEGFSNVAMAQRLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGLL 947


>gi|229820676|ref|YP_002882202.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229566589|gb|ACQ80440.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 220

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 37/240 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRS--DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             +++  +       ++HL      D++     +       +R+                
Sbjct: 2   TTVLVVDDHPVYRRGIAHLLAAGGYDVVGEAAGVREAEQLALRLR--------------- 46

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      D    +  +              +   +F          A 
Sbjct: 47  ---PSVVIMDLGLPDGSGVDATSRIVAAN--------PGTRVVVVTLFDDDGSVQRALAA 95

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y     D   I   +  +     ++       +   AA  A   +         + 
Sbjct: 96  GAAGYVVKDADPDEILAAVRAVETGAMVLGAHLAGAVLGAAAVAARPAEDV-------WG 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AYAVRN 243
           LT RE + L  + +G T+  IA  LG+S  TV N ++ I+ K     R  A     A R 
Sbjct: 149 LTPRERQVLDLLVKGLTNRAIAERLGLSGKTVANNVSVILGKLGATDRVEATQLVRAQRA 208


>gi|171058084|ref|YP_001790433.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775529|gb|ACB33668.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 205

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 17/219 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
             D       L   +     +  + E   G     L R   +    LD  +       L+
Sbjct: 2   ADDHPVVRQRLRQILMAEPALTVVAEAGDGDEALALARSTDWDLALLDFSMPGCSGLSLI 61

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +      +          L   V               + Y        ++   +  +
Sbjct: 62  EHVRRDFPQR--------PVLVLSVHDEQLLAPHVLRAGASGYLCKECATEQLIQAIRAV 113

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G  +       +            + +        L+ RE   +  +S G+   EIA
Sbjct: 114 TAGGTHVSAPVAQRLAW--------QVAIESGGAPHERLSDREYRVMWLLSSGRHIVEIA 165

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L +   TV +Y   ++RK      +  ++YAVR+ +V
Sbjct: 166 QELHLRPRTVASYRHRVLRKLGLHDTAELVSYAVRHELV 204


>gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea
           34H]
 gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea
           34H]
          Length = 269

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 79/249 (31%), Gaps = 38/249 (15%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSD--------- 81
              +       + M  + E +G   FL            +  ++   +S           
Sbjct: 9   FSAIQNEGDLLLLMDNVVESLGLDGFLFAYAINGWLPSGEPGEIQRWLSKGIDKKSLKAW 68

Query: 82  -WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG--------------- 125
             PFD           ++  + +   +   P    L + I                    
Sbjct: 69  LAPFDRASRKDSDVNRRFDPIRRFMVQQTIPHQFLLTDIIKENKNEYTLVEKRWINSLIK 128

Query: 126 --MDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQA-----NMFKSYD 177
             + N               L       R  +       + L A         N+    D
Sbjct: 129 NNVVNLISIPVQLPPSEYWSLSFFSKNTRYQLESSDKARLMLFAHQLVYHCIDNLQWRED 188

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  +LT RE +CL W ++GKT++EIA ILG+   T+  YI ++M++   ++++ A+
Sbjct: 189 GMKYSIVKLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSKTQAV 248

Query: 238 AYAVRNNIV 246
             A+   ++
Sbjct: 249 VKAIEFGLL 257


>gi|163800211|ref|ZP_02194112.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
 gi|159175654|gb|EDP60448.1| putative transcriptional regulator, LuxR family protein [Vibrio sp.
           AND4]
          Length = 222

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 172 MFKSYDVHWGKDFE--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             + +     K     LT RE + +T +S G ++ +IA  L +S NTV  ++ +I +K  
Sbjct: 141 HLRRHGRPTSKPLREILTKREQQIITLLSSGASNQQIADQLLVSENTVKTHLHNIFKKID 200

Query: 230 TKTRSGAIAYAVRN 243
            K R  A+ +A  N
Sbjct: 201 VKNRVQALIWAKEN 214


>gi|161524306|ref|YP_001579318.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189350938|ref|YP_001946566.1| putative signal transduction response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221198444|ref|ZP_03571490.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2M]
 gi|221208607|ref|ZP_03581608.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2]
 gi|221214793|ref|ZP_03587762.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD1]
 gi|99652803|dbj|BAE94656.1| response regulator [Burkholderia multivorans]
 gi|160341735|gb|ABX14821.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
 gi|189334960|dbj|BAG44030.1| putative signal transduction response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221165332|gb|EED97809.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD1]
 gi|221171598|gb|EEE04044.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2]
 gi|221182376|gb|EEE14777.1| transcriptional regulatory protein FixJ [Burkholderia multivorans
           CGD2M]
          Length = 212

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 38/236 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q  + +  +DE     +  L       +      +  +          +           
Sbjct: 9   QETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ----------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +S     +L   +                 +F      +P  ++    
Sbjct: 58  ---IACLILDVRMSGMSGLELQERLIADN--------AALPIIFVTGHGDVPMAVSTMKK 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    FD A +R  +  +  K               A  ++   +       +  +
Sbjct: 107 GAMDFIEKPFDEAELRKLVERMLDK---------------ARSESKSVQEQRAASERLSK 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 152 LTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|84394370|ref|ZP_00993090.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84374999|gb|EAP91926.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 229

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 37/64 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +LT RE++ +  +  G ++ +IA  L IS  TV +++  I RK A K R  AIA+
Sbjct: 163 TPTNVDLTIRELQVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAW 222

Query: 240 AVRN 243
           A +N
Sbjct: 223 ANQN 226


>gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 306

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 63/216 (29%), Gaps = 37/216 (17%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V       ++LAR+         T       +  G    L+       +        
Sbjct: 112 VDYVVKPIRAPEVLARLHTHARNARITRLAREAVDVAGLGVLLV-------DAHGRIAWR 164

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           S      +                                I P      R   +   +A 
Sbjct: 165 SPQAERWLAACGPDGPGNV---------------------IAPAEAGTERVFQMPGPLAP 203

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWI 197
            R+ L  L           + E   L   Q            +     LT RE E L+W+
Sbjct: 204 QRLTLRSLG-------PAGMGETMWLLEVQRGDGSDGAASPSRLSAAALTPRETEVLSWL 256

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           ++GKT+ +I  ILG+S  TVN ++  I  K   +TR
Sbjct: 257 AKGKTNRDIGDILGVSPRTVNKHLEHIFEKLGVETR 292


>gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
 gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Conexibacter woesei DSM 14684]
          Length = 873

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 69/236 (29%), Gaps = 15/236 (6%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L   DE R   +  L                      +         +H  L R D  +
Sbjct: 651 LLLALDEARVKLLLALGRTGAAANAASAPRGPSRPERLLL-------GAHVALAREDPAE 703

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            + L     +    D      L       +       ++  +                  
Sbjct: 704 ARWLADRFLARATTDTRPAHVLEGMLLQASTTYELGTVWDALSWLERAIAAAAEERCR-- 761

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                +       L+ +  +           +G +A                D  L+ RE
Sbjct: 762 -RPFAEAGAPIGALLRVLARRGPWPP-----VGFVAELLDERPAGTAAEAPGDSALSQRE 815

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              L ++  G +  EIA  LG+S NTV  +++SI RK   ++R+ A+A A    ++
Sbjct: 816 RAILRYLPSGLSKREIAGELGVSANTVKTHVSSIYRKLDVRSRAQAVARARELGLL 871


>gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1]
          Length = 74

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   DKSFQPKPLLTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VIELLRMG 70


>gi|167586004|ref|ZP_02378392.1| two component transcriptional regulator, LuxR family protein
           [Burkholderia ubonensis Bu]
          Length = 281

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +VLN  D +R   +  L  + D  A                 L          +   D+ 
Sbjct: 4   LVLNS-DAERRDGLKALLRQIDRHAAYNDAPDGFQ----ARRLLRNERFDLVAIDWQDVG 58

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDN 128
           +  +L ++ ++  P      +                          PE +         
Sbjct: 59  RRSELQALCNACSPSPAAVLID----------------------DATPETVRGLFNCGVT 96

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM----FKSYDVHWGKDF 184
                +     I     ++   G  I    L  +  L   +                   
Sbjct: 97  GVIPRSTRPHLIVRAFEMVLLGGHYIPPIALNLLPSLLVTRHEAHVQELAGTIPRRSATR 156

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 157 VLSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 214

Query: 245 IV 246
            +
Sbjct: 215 WL 216


>gi|218778430|ref|YP_002429748.1| LuxR family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759814|gb|ACL02280.1| two component transcriptional regulator, LuxR family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 557

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  I+L          +  + +  +  A +      +    R+  +   +      ++  
Sbjct: 348 QTRILLGSGQPILREGIVRILSGMEDAAVVEEASTFLELMDRLKDVDFDLLLLDTSILGA 407

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                                  M + E   Y  VL        P       ++      
Sbjct: 408 QAVH-----------------NLMKIKETSPYTPVL-----TLTPDSDDDDFSVRMLRHG 445

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                S +  V  +   +  +    + +      ++                     ++L
Sbjct: 446 AAGCLSHSSSVNELIAAVHKVAAGRKHVSNRIAEKLA--------FEVDIYAPKPFLYKL 497

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + +  I+EGKT  EIA  L +S  T+  Y   +  K   +T +  + Y V   ++
Sbjct: 498 SDRERQVMFMIAEGKTMKEIASELRLSYKTIATYRTRVFEKMHMRTDAQIVRYVVSKGLL 557


>gi|256420538|ref|YP_003121191.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035446|gb|ACU58990.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 198

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 40/91 (43%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 +  +    A   +         + L+ RE+E L  +  G T  +IA    IS  
Sbjct: 106 AAMQTNLLAVQKVLAFFNRKNAGSQDHRYGLSPRELEVLDCLVNGDTYKKIAEHCHISVG 165

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV ++I +I RK    +RSGAI  A++  +V
Sbjct: 166 TVRSHIMNIYRKLDVNSRSGAIVKAMQERLV 196


>gi|261340133|ref|ZP_05967991.1| nitrate/nitrite response regulator protein NarL [Enterobacter
           cancerogenus ATCC 35316]
 gi|296101980|ref|YP_003612126.1| nitrate/nitrite response regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|288318066|gb|EFC57004.1| nitrate/nitrite response regulator protein NarL [Enterobacter
           cancerogenus ATCC 35316]
 gi|295056439|gb|ADF61177.1| nitrate/nitrite response regulator [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295095651|emb|CBK84741.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 216

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +  +I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPASILLIDDHPMLRTGVKQLVSMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +                 +   V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLS--------GRVVVFSVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATSDRDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 SQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|254475262|ref|ZP_05088648.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214029505|gb|EEB70340.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 240

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 25/199 (12%)

Query: 50  YALTEYVGASHFLLVRWDL--FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
              T   GA     V  +   F    LD  +        +  +          V+     
Sbjct: 36  EVTTCQRGADVLTAVSQESCGFDLILLDVHMPDMTGMSSIIEIVEKAAPI--PVVL---- 89

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
                  +              Y   + ++  +   L ++   G     + L        
Sbjct: 90  --LTGGVSDQFAHQALNRGVRGYIPKSTNLGNLCDILKVVLSGGVYAPANVLA------- 140

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                           + L+ RE      ++ G T+  IA  LG+S  TV  +I SI RK
Sbjct: 141 --------AKPLGESLWGLSPREQSIGELLALGLTNKVIAFELGLSEPTVKMHIRSIFRK 192

Query: 228 TATKTRSGAIAYAVRNNIV 246
                R+   A    N++V
Sbjct: 193 LGAANRTQVAAAFQENDLV 211


>gi|209551570|ref|YP_002283487.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537326|gb|ACI57261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 260

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG---------LLAAYQA 170
               A + +    L   +      + LL   G       L  +          L      
Sbjct: 112 RLVEARIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPSALLNRLTNKNTPLEPSLYQTKSV 171

Query: 171 NMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           +  ++  +   +D    LT REV+ L  I +G  +  IA  L +S NTV  ++ +I +K 
Sbjct: 172 DAARTNALKLRRDSISSLTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKM 231

Query: 229 ATKTRSGAIAY 239
             + R+ A + 
Sbjct: 232 NVRNRTEAASR 242


>gi|317128933|ref|YP_004095215.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315473881|gb|ADU30484.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 708

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           +S      +D +L+ RE++ L  + +G ++ +IA  L IS +TV N++  I++K     R
Sbjct: 633 RSPKSKITEDLKLSKRELDVLDLVLKGYSNSDIANTLFISDHTVKNHMTKILQKLDCTDR 692

Query: 234 SGAIAYAVRNNI 245
           S AIA   +   
Sbjct: 693 SQAIAKVYQMGY 704


>gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8]
 gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8]
          Length = 192

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 59/222 (26%), Gaps = 32/222 (14%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D     + L   +             G    +           LD  +      
Sbjct: 2   RLLVADDHPLFRLGLKAALEAEGLEVVAEAGTGEEALVQALEKAPDAVLLDLRMPGMDGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +             R   +    +      +       + Y S       ++  L
Sbjct: 62  TCARRLREMGY--------RGLVILLTTYQEPALLLEAYKAGADAYLSKELSAPELKRRL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +      +    +                          LT RE E L  ++EG ++ 
Sbjct: 114 LRIRQGEERLTAPDIPA------------------------LTPREEEVLRLLAEGLSTK 149

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV +++ S+  K   + R  A++ A     +
Sbjct: 150 EIARALRLSPETVRSHLESLYAKLEARNRVEALSRARSLGFL 191


>gi|300814540|ref|ZP_07094796.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511367|gb|EFK38611.1| transcriptional regulator, LuxR family [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 208

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 56/168 (33%), Gaps = 19/168 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSE-KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            KLD ++      D    +  +E   K    L+       P    +             +
Sbjct: 47  TKLDLVIMDILMQDGSNGLDAAEKIKKLKPELKIIAVTSMP---EVSWMDRAKEIGIESF 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    I   +         I  D   E+ L                    +LT RE
Sbjct: 104 WYKEVSEDTILEIIERTLNGES-IYPDETPEVKL--------------GQVSSSQLTPRE 148

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ L  ++ G  +DEIA  LGIS NTV  +IA ++ KT  KTR+    
Sbjct: 149 IQVLRLLTTGVGNDEIASKLGISENTVKTHIAHLLSKTGFKTRTQLAI 196


>gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102]
 gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102]
          Length = 91

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D     +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSSDPSDPLNISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ N 
Sbjct: 61  RVALLNWAMDNG 72


>gi|256380943|ref|YP_003104603.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255925246|gb|ACU40757.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 234

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 70/217 (32%), Gaps = 18/217 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +  +D        + A+         +G++  L     L +  + D ++         + 
Sbjct: 24  VALVDPVPLLREGLAAVVRRTPGLNWLGSTGHLNSAVRLHERLRPDVLLVDSVLDP--QG 81

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              S        L     +  P   T        A         T + A +   ++    
Sbjct: 82  HLASLLVASDPQLAVVALVREP-HRTPKYVRGALAAGVRGLVPRTAEPAEVVEAILRAHR 140

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +   +           +    +  +           L+ RE E L  I++G  +  +A  
Sbjct: 141 ERVHLDPTLAPLAAGFSPGADSGTRRA---------LSRREYEVLQLIADGLENQSVADA 191

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L +S  TV  ++ +I+RK   + R+ A++ A +  ++
Sbjct: 192 LYVSVETVRTHVKNILRKLRARDRTHAVSLAYQAGLL 228


>gi|255523270|ref|ZP_05390241.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|296186229|ref|ZP_06854634.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255513138|gb|EET89407.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|296049497|gb|EFG88926.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 882

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  I  G  + EIA  L I+ +T  ++I +I  K   + R  A+A A    I+
Sbjct: 823 SKREKEVLMLIESGAKNSEIAKALFITESTTKSHILNIFSKLGVRNRIQAVAKAKEIGII 882


>gi|71908721|ref|YP_286308.1| LuxR response regulator receiver [Dechloromonas aromatica RCB]
 gi|71848342|gb|AAZ47838.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas
           aromatica RCB]
          Length = 202

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 32/211 (15%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV---------RWDLFQEQKLDSIVSSDWPFDL 86
           +  +D   +    M  L E  G                R D+     LD  +      +L
Sbjct: 8   IFVVDDDEAMRDSMTWLLEGEGYRVACFDSAENFLKARRDDMRGCLVLDVRMPEMSGLEL 67

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +             +   +F      +P  ++        +    F    +      
Sbjct: 68  QEKLDALGS--------QLPVIFVTGHGDVPMAVSALQRGACDFIEKPFHNEDLL----- 114

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                      R+     L    +   +   V   +  +LT RE E +  +  GK + +I
Sbjct: 115 ----------SRIQRALELDNQLSARRQRDGVISHRLDQLTQREREVMQLVVAGKLNKQI 164

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           A  L IS  TV  + A +M K   +T +  +
Sbjct: 165 ADELNISMKTVEAHRARVMEKMGVRTLAELV 195


>gi|17544911|ref|NP_518313.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17427200|emb|CAD13720.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       V H+  R+                                LVR  
Sbjct: 2   IRVMIADDHAVMRDGVRHILERAGDFEVACEASDGTQVLQ---------------LVRDH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +L+R +                 L   +               
Sbjct: 47  QPQVIVLDLSMPGRSGLELLRQLHDDHPT--------VRVLVLTMHAEEQYVARAFRAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   L  +   G  +      ++       ++              L+
Sbjct: 99  AAYLTKESAATELVTALQKVARGGTYVSPPMAEKLAHSLGETSDEAAH--------MRLS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +  G+   EIA  L +S  T++ Y   +M K    + +  + YA+R+ +
Sbjct: 151 DREMEVYRRLVLGEPLTEIAASLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHRL 208


>gi|150003225|ref|YP_001297969.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294776005|ref|ZP_06741501.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|149931649|gb|ABR38347.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|294450143|gb|EFG18647.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
          Length = 256

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 37/77 (48%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             MF    V     F LTGRE+E L  I  G  S EIA  L IS +TV+ +  +++RK  
Sbjct: 179 GEMFSPGVVIMNPAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLG 238

Query: 230 TKTRSGAIAYAVRNNIV 246
            +    AI     + ++
Sbjct: 239 VQNSLEAIRLGQESGLL 255


>gi|94499939|ref|ZP_01306474.1| putative two-component response regulator [Oceanobacter sp. RED65]
 gi|94427797|gb|EAT12772.1| putative two-component response regulator [Oceanobacter sp. RED65]
          Length = 222

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 64/235 (27%), Gaps = 31/235 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            ++I++  +     S +            +       S    + +               
Sbjct: 4   PISIIIADDHPLFRSALKGTLESQFDQPTLFEAQDMASLQQAVES--------------H 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +     F  +  +       +  V+                        
Sbjct: 50  QSASLVLLDLHMPGAEGFSALVFLVA--HYPHIPVVIVS------AHEEAEIIQRAMQHG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +   +  V  +   +  +   G    +    ++     +  +  +           L
Sbjct: 102 ASGFLPKSSSVEDMTQAINTVLQGGIWAPQ----KLEQNRQHNPDEMQIAKALAS----L 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           T ++    + +S+G  + +IA  L ++  T+  ++  I RK    +R+  +  A+
Sbjct: 154 TPQQFRVASMVSQGMLNKQIAYELDVTEATIKAHMTEIFRKLGLHSRTQ-VVKAM 207


>gi|16263379|ref|NP_436172.1| Two-component response regulator [Sinorhizobium meliloti 1021]
 gi|307321169|ref|ZP_07600572.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|14524065|gb|AAK65584.1| Two-component response regulator [Sinorhizobium meliloti 1021]
 gi|306893160|gb|EFN23943.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 213

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 22/220 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD----SIVSSDWPFDL 86
           DL   +  +D   S+   +  L    G    L    D F  Q  D     ++       L
Sbjct: 3   DLEPIVHIVDDDQSFRTAVGRLLAASGFRVALYESGDQFLAQFADGEPGCVLLDLGLPGL 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     +   +L               + +         +         +   +  
Sbjct: 63  SGLELQDRLAEKAPLLPIVFLTGRGDIRATVQAM---KAGAEDFLEKPTPKEVLLETIGR 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +  +   ++  +  L                 +   LT RE E    I  GK + +I
Sbjct: 120 ALRRYALRRLEQDRKHAL---------------RRRLANLTPREFEVFGLIVRGKLNKQI 164

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  LG S  TV  +  ++M K  T++ +  ++ A R  +V
Sbjct: 165 AQALGTSERTVKAHRHNLMEKLGTRSLAETVSIAERLGLV 204


>gi|300691836|ref|YP_003752831.1| transcription regulator protein [Ralstonia solanacearum PSI07]
 gi|299078896|emb|CBJ51557.1| putative transcription regulator protein [Ralstonia solanacearum
           PSI07]
          Length = 222

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 22/237 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N VL        + ++HL      +  +  ++        + A  +       L++   
Sbjct: 1   MNTVLIEAHPLVRTGIAHLLRTLKGVTGVTVVEPDEGMFDAIEAHADA----GLLVIGLP 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L                D +  +       + + +    E   P        +       
Sbjct: 57  LPH-------------LDELSAIGEIMHRPHAHHVVVLAESESPDIIRTLMQM-----GL 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L L+   G+ I    L     L    +           K   +T
Sbjct: 99  SGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPSPSLAGDPQTDPKLLGIT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A +  
Sbjct: 159 PRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQRG 215


>gi|289705063|ref|ZP_06501474.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
 gi|289558226|gb|EFD51506.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58]
          Length = 232

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 58/243 (23%), Gaps = 29/243 (11%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           V+  +     S +       D LA +            +  L                  
Sbjct: 10  VIVDDHAIFRSGLRADL-DPDRLAIVGEAGDVDEAVRTVLELA----------------- 51

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               D ++                 ++          L   V     + +         Y
Sbjct: 52  ---PDVVLLDVHLPGGAGGGGAEVAERVLARRPAQRFLALSVSDAAEDVVAVIRAGARGY 108

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------GLLAAYQANMFKSYDVHWGK 182
            + T   A +    + +     +        +               A            
Sbjct: 109 ITKTASGAEVADAAVRVADGDAVFSPRLAGFVLDAFRGTAPASPPVPAAATSGAAAPDED 168

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +  I+ G T  E    L IS  TV  +++S++RK     R     +A R
Sbjct: 169 LDRLSAREREVMRLIARGYTYREAGAELFISDRTVETHVSSVLRKLQLSNRHELTRWAAR 228

Query: 243 NNI 245
              
Sbjct: 229 RGY 231


>gi|2655264|gb|AAC23717.1| transcriptional activator [Pseudomonas sp. VLB120]
          Length = 207

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 22/205 (10%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVSSDWPFDLVRCMALSE 94
           +D  +S    +  L    G           F E +       +V       +       +
Sbjct: 10  VDDDLSVREGLRNLLRSAGFEVETFDCASTFLEHRHPDQHGCLVLDMRMPGMSGIELQEQ 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
                + +      F      +P  +         +    F+   +   +     +  + 
Sbjct: 70  LTAISDGIPIV---FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAI-----EQGLQ 121

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           L     +   +      +F S          LTGRE + L     G  + +IA  LGI+ 
Sbjct: 122 LDAERRQARAIQDQLEQLFSS----------LTGREQQVLQLTIRGLMNKQIAGELGIAE 171

Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239
            TV  +  +IM+K   ++ +  +  
Sbjct: 172 VTVKVHRHNIMQKLNVRSLANLVHL 196


>gi|307328684|ref|ZP_07607856.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885633|gb|EFN16647.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 228

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 24/190 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LD  +      D    +           L     L    F   
Sbjct: 63  GDEIVPRALETRPDVALLDIELPGRSGLDAAAALRE--------ALPECQVLILTTFGRP 114

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +      V  + + +  +    R+I                +   + 
Sbjct: 115 GYLRRAMEAGAAGFLVKDGPVEELAVAIRRVLAGERVI----------------DPGLAA 158

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + L+   +G T  +IA  + +S  TV NY++S + KT T+ R  A
Sbjct: 159 AALSAGPNPLTQRERDVLSAAVDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEA 218

Query: 237 IAYAVRNNIV 246
           +  A +N  +
Sbjct: 219 VRAARQNGWL 228


>gi|316935154|ref|YP_004110136.1| LuxR family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602868|gb|ADU45403.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris DX-1]
          Length = 208

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 37/239 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +     + +  +D      +S + + +                     +    G S 
Sbjct: 1   MNGQSSGGEVFVVDDDPAVRETLSIVLSAAGY-----------------QVICFADGESL 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             + R        LD  +      D++  +   +      +     +        +   +
Sbjct: 44  LAVARNRSPACILLDVHIPGRSGLDILAELHAEDYP--APIFMISGKG------DIAMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F    I      +      I            +   +         
Sbjct: 96  NAIKNGALDFIEKPFRGKEI------VSRVEEAIEAFSRRRDASQGSKAPSYNFPGKEP- 148

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT RE E L   S G T+ E    LGIS  T+  + A+IM+K   +  +  +  
Sbjct: 149 -----LTLREREVLELFSSGNTNKEAGRHLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|302875621|ref|YP_003844254.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
 gi|307690153|ref|ZP_07632599.1| two component transcriptional regulator, LuxR family protein
           [Clostridium cellulovorans 743B]
 gi|302578478|gb|ADL52490.1| two component transcriptional regulator, LuxR family [Clostridium
           cellulovorans 743B]
          Length = 206

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 73/231 (31%), Gaps = 34/231 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +D      +  L      +  +                    G       + +
Sbjct: 3   IKILICDDDSLIRESLKILLPLKGDIQIIGEAAN---------------GRECIEFCKLN 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      + V+ +  S   K          L    F              
Sbjct: 48  EVDVALIDIRMPEVNGVEAVKEIVKSTNTKC---------LILTTFDEEDYINEALYYGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y        +I   ++ ++    ++  + L ++           K  +    K ++ T
Sbjct: 99  KGYILKNNSPDQIVNSIVSVYNNTIVMNDNILDKLH---------GKETNPKISK-YDFT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            RE + +  +SEG ++ EI+  L IS  T+ NYI +I+ KTA + R+    
Sbjct: 149 EREKDIIIAVSEGLSNKEISKKLFISEGTIRNYITAILDKTALEHRTAIAV 199


>gi|119469813|ref|ZP_01612651.1| putative csg operon transcription regulator (LuxR family) protein
           [Alteromonadales bacterium TW-7]
 gi|119446796|gb|EAW28068.1| putative csg operon transcription regulator (LuxR family) protein
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 15/186 (8%)

Query: 65  RWDLFQEQ-KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--- 120
                  + K D  +      + +  +                     +F+   E +   
Sbjct: 41  ALPKPDARDKFDLYLIDGAKNNWLDLLPADLLC-------LAKRHKVVLFNVDQEAVCEK 93

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD----RLWEIGLLAAYQANMFKSY 176
                  N     +     I  GL+ +        R        +I L+A+   ++    
Sbjct: 94  NLLLNHVNGVFYKSDAPEVIFKGLVRVTSDELWFTRKVISKAFSDILLVASSFNSLKDDI 153

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            +       LT RE   +  I++G +++ IA  L IS +TV  ++ S  +KT ++ R   
Sbjct: 154 TLKQDDYAHLTKREKSVIHLIAQGASNNTIADKLNISDHTVKTHLYSAFKKTNSRNRIEL 213

Query: 237 IAYAVR 242
             +A R
Sbjct: 214 ANWAQR 219


>gi|77459476|ref|YP_348983.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77383479|gb|ABA74992.1| putative luxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 24/214 (11%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  R+I  D    +   +    + +     +    DL  +  L  + + D P  L+  + 
Sbjct: 1   MACRIIIADDHPLFREALLRTVQRLLPEALIEEAGDL--DTVLALLPAGDEPDTLILDLR 58

Query: 92  LSEKDKY--YNVLQRPTELFCPVFHTLPENITP----PAGMDNRYCSLTFDVARIRIGLM 145
                       L+R       +  ++ ++        A   + +         I   + 
Sbjct: 59  FPGLTCVTQLAELRRCLPRTTLIVVSMVDDEALIGEVMAAGIDGFIGKNIAPDEIGQAIR 118

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     ++       + L                     LT R+ E L  I++GKT+ E
Sbjct: 119 AIREGEVLVKFAPSGLLPL----------------DTCTALTPRQQEVLRLIAQGKTNKE 162

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L IS  TV  +++S++R     +R+ A   
Sbjct: 163 IARELDISPFTVRIHVSSLLRVLNVPSRAAAAVK 196


>gi|148548958|ref|YP_001269060.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148513016|gb|ABQ79876.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|313499885|gb|ADR61251.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 215

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +++  +       V  L  R    + +    C+      +               
Sbjct: 1   MEKLKVIIADDHPIVLLGVRELVERDPRFSVVGEAVCSQGLIELLERQ------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWP-FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     D  + +D P  D ++ +   ++      +   T +  P+  T  + +   
Sbjct: 49  ---PVDMVISDYNMPADSPYGDGLKLIDYLKRHYPAVRILVLTMISNPLILTRLQEL--- 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               +     +     I   L  +             +         ++         + 
Sbjct: 103 --GVDGVIQKSQLHGEIEKALNAVARNSTYRAPAPARQ---------SVIACNTAIDQRV 151

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ +E E L     G++  EIA     S  T++    S MRK    +    +AY + +
Sbjct: 152 ENLSPKEFEILRLFVAGQSVSEIARSQHRSTKTISAQKVSAMRKLEVNSDQELLAYCLAS 211

Query: 244 NI 245
           +I
Sbjct: 212 HI 213


>gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 214

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 38/239 (15%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++   +    +   +    RS L+A +   +      + + A  +  G          
Sbjct: 2   INVLFIEDQPLVSEATAEKIARSPLVANIEVCNSADKALLALKATPDRWG---------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  V       L   +            +          H         A   
Sbjct: 52  ---LILLDLDVPGAVGLSLAMEIKKLG--------KEGRTCILTGTHRTDYIAQAKASGF 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     ++  +   L       ++     L ++G                      LT
Sbjct: 101 QGYILKAIEIKELEASLDKAIAGEKVFP--ELPDLG---------------ANPNAIRLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ +CL ++  G+++ EIA +L +   TVN +I S M     K+R+ A+  A++  ++
Sbjct: 144 NRQCQCLEFVGAGRSTKEIARLLSLHPGTVNYHIDSAMEALGVKSRAHAVQKALQLGLL 202


>gi|226311034|ref|YP_002770928.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226093982|dbj|BAH42424.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 873

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 35/270 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q +I L R+ EQ    V+        LAR+      VS    M A  EYV      +++ 
Sbjct: 609 QQSIQLARQLEQTDRVVAAQV----FLARLKLAQGDVSGAATMLANAEYVARKQGFVMQM 664

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP--------- 117
               E ++  ++  D      R     +       +             L          
Sbjct: 665 PPIAEVQVLILLQQDNLTAAARLALRHDLPILQARVLLAQGDTSAALAVLEPLLVQAEAK 724

Query: 118 -------------------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                              +     A    +   +  +        +    + + IL D 
Sbjct: 725 QIEDERLKIMLLQAVALQVQGDQAKAAQIMKDVLVIAEPGGFIRTFVDEGSQMKRILHDA 784

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNT 216
                +L  Y   +   ++ H        L+ RE+E L  I +G ++ +IA  L ++ +T
Sbjct: 785 TVH-RMLPRYIEKLLAEFEPHHADSLIEPLSERELEILQLIEKGLSNRDIAQQLFLALST 843

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +  ++  K   + R+ A+A A +  ++
Sbjct: 844 VKGHNRNVFDKLQVQRRTEAVARARQLGLL 873


>gi|86750958|ref|YP_487454.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris HaA2]
 gi|86573986|gb|ABD08543.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris HaA2]
          Length = 209

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 29/216 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHF---------LLVRWDLFQEQKLDSIVSSDWP 83
              +  +D   +    +  +    G              + R        LD  +     
Sbjct: 7   AREVFVVDDDPAVRETLSIVLSTAGYEVICFADGESLLAVARSRSPACILLDVHIPGRSG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D++  +   +      +     +        +   +         +    F    I   
Sbjct: 67  LDILAELHAEDYP--APIFMISGKG------DIAMAVNAIKNGALDFIEKPFRGKEIVAR 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +            +   +            K+    +     LT RE E L   + G T+
Sbjct: 119 V------------EEAIDAFQRRRGPGTEVKAPSYVFPGKEPLTLREREVLELFASGNTN 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E    LGIS  T+  + A+IM+K   +  +  +  
Sbjct: 167 KEAGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|56460314|ref|YP_155595.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179324|gb|AAV82046.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 207

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 15/165 (9%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D I       D     AL    K                 ++ E     A     Y    
Sbjct: 48  DLIFLEMDLPDAEIRPALQRLKKVAPRTHIVLFTRP---RSISEVRQVLAAGVRSYLPKD 104

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
               + ++ +  L    R I  D          +        D   G +  L+ R++E +
Sbjct: 105 SSAEQAKLAIRALLNGDRHIPDD---------PHLNE---PRDKSSGAESFLSPRQLEIM 152

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +++G ++ EIA ILGI+  T+  ++++I +      R+ A  +
Sbjct: 153 QLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKVSNRTEATLW 197


>gi|115377388|ref|ZP_01464593.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310824785|ref|YP_003957143.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115365599|gb|EAU64629.1| response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309397857|gb|ADO75316.1| Response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 223

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 57/221 (25%), Gaps = 22/221 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL----------VRWDLFQEQKLDSIVSSDWPFD 85
           +  L+    +   + ++ E  G                 R        +D  +       
Sbjct: 8   VGILEDQQVFLESLVSICENAGFEVVATGSTLEDFMASTRQHPPDVALVDLRLERVQDAV 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT-FDVARIRIGL 144
           +   +   E             L     H               Y          +   +
Sbjct: 68  VTDGVRAVELLHD--FFPAVKPLVLSGSHDTEVMERCFRAGAAGYLCKLKVTCVELVDAV 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +   D       ++                   LT R+ E L +IS G  + 
Sbjct: 126 TRVAQGESMRPLDLFSARVEVSEAVDATGVRL---------LTPRQFEVLRYISTGADNL 176

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  L I+  TV  +I SI +K   + R+     A +  +
Sbjct: 177 KIAACLNITERTVKAHITSIYQKLKVENRTQMAMLACQLGL 217


>gi|333023582|ref|ZP_08451646.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332743434|gb|EGJ73875.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 224

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 55/215 (25%), Gaps = 9/215 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +     +  + E   G     L          +D  +      
Sbjct: 3   VLLADDDALVRAGLRLMLGGAPELEIVGEAADGEEAVRLAEELGPDVVLMDLRMPGTDGL 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +            + P  L    FH   + +         +       A I   +
Sbjct: 63  TATERIRERP--------EAPEVLVLTTFHADEQVLRALRAGAAGFLLKDTPPAEIAAAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     ++       +    A   +     D    +   L  RE E    +  G ++ 
Sbjct: 115 REVARGRPVLSPLVTRRLIAQVAGGDSPHARRDRARARLARLAEREREVALAVGRGASNA 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L +S  TV  +++ ++ K     R      
Sbjct: 175 EIAAELYLSVPTVKAHVSRVLAKLHLNNRVQIALL 209


>gi|239930001|ref|ZP_04686954.1| two component transcriptional regulator, LuxR family protein
           [Streptomyces ghanaensis ATCC 14672]
          Length = 209

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 61/225 (27%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           V  +    D+    + L   +     M    +   G+     V         LD  +   
Sbjct: 8   VQRIVLAEDMHMIRVALAALLDLEPDMEVAAQVGSGSEVLPAVLRTGADTAILDIDMPGM 67

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +                 L                     +         + 
Sbjct: 68  DGIAAAAVLRDRA--------PGCRTLILTGMARPGTLRRALDAQVAGFLPKDASPEELL 119

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +    R+I  +       +                 D  LT REVE L  ++EG 
Sbjct: 120 GGVRRVGAGRRVIDPELAMAAWEIG----------------DSPLTEREVEVLARVAEGA 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA    +S  TV NY+ +I+ K   + R  A+  A  N  +
Sbjct: 164 DTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGWL 208


>gi|4217959|gb|AAD12186.1| putative DNA binding protein TutB1 [Thauera aromatica]
          Length = 227

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 23/174 (13%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  + +     L + +             +   +F   +                
Sbjct: 55  GCVILDVRMQNVSGLQLQQALCDRGF--------KLPIIFLSAYGDAQMGAQAVKKGAFD 106

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    +    +   +                     +    N  +           L+ R
Sbjct: 107 FLQKPYRNQDLLDAVNAALA---------------FSKEMTNKQREKQERADLLAALSQR 151

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E+E L  +  G +S EIA +LGIS  TV  +   IM K   ++    I +A+R+
Sbjct: 152 EMEILDKVVCGNSSKEIAKLLGISHKTVEAHRGRIMSKLGLRSTGDLIHFAMRS 205


>gi|327404807|ref|YP_004345645.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327320315|gb|AEA44807.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 208

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 36/240 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  + +     +++L    + +A++            +      V        
Sbjct: 1   MSKIGILIADDHDLILQGLANLLVEEEWIAQIHQARTKTDVLRILQQEQIQV-------- 52

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L Q+ K  +  +  +  D+    A                +            +   
Sbjct: 53  ---LIQDVKFGADDARSFIPDIRNKYAE------------LKIIALSSLGDSASIHSVMN 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N Y   +   +++   +  +   G+ +  +    +             +      D 
Sbjct: 98  AGANGYVVKSESGSQLVSVIKSVLSDGQALSVESQKVL-------------FKTQISPDI 144

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E L  I E  ++ EIA +L +S  TV +Y A++  K   K  +G +  A+   
Sbjct: 145 QLSIREKEVLKAILEELSTKEIAALLFLSEKTVEHYRATLFVKFDVKNVTGLVKNAILLG 204


>gi|302545152|ref|ZP_07297494.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462770|gb|EFL25863.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 201

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D+      L   + +   +  + E   GA      R        LD  +   
Sbjct: 1   MVRVLIAEDMHMLRKALVALLEFEPDIEVVAEFSSGADILPQARQLRPDVAILDIDLPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +           +     +               A     +       A + 
Sbjct: 61  DGLTAAAELHT--------AVPECRTMMLTSLGRPGNLRRALAAHVAGFLLKDSSPATLC 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R+I                               LT RE+E L   SEG+
Sbjct: 113 DAIRAVARGERVIDPQLA----------------LAALDDGPQPLTPRELEVLRMASEGE 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  IA  L +S  TV NY+ S + K   + R  AI  A     +
Sbjct: 157 EAARIAARLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201


>gi|46198976|ref|YP_004643.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196600|gb|AAS81016.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 192

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 58/222 (26%), Gaps = 32/222 (14%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D     + L   +             G                LD  +      
Sbjct: 2   RLLVADDHPLFRLGLKAALEAEGLEVVAEAGTGEEALAQALEKAPDAVLLDLRMPGMDGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +             R   +    +      +       + Y S       ++  L
Sbjct: 62  TCARRLREMGY--------RGLVILLTTYQEPALLLEAYKAGADAYLSKELSAPELKRRL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +      +    +                          LT RE E L  ++EG ++ 
Sbjct: 114 LRIRQGEERLTAPDIPA------------------------LTPREEEVLRLLAEGLSTK 149

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV +++ S+  K   + R  A++ A     +
Sbjct: 150 EIARALRLSPETVRSHLESLYAKLEARNRVEALSRARSLGFL 191


>gi|321157306|emb|CBW39288.1| Response regulator [Streptococcus pneumoniae]
          Length = 198

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 23/120 (19%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   + D   +   L  ++  G++   + + E+                       
Sbjct: 98  GAYGFLDKSVDPDELVKKLEKIYLGGKVFSDEVMVEV----------------------- 134

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A +   
Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQLGY 194


>gi|254884986|ref|ZP_05257696.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|319640388|ref|ZP_07995112.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|254837779|gb|EET18088.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|317387991|gb|EFV68846.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 256

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 37/77 (48%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             MF    +     F LTGRE+E L  I  G  S EIA  L IS +TV+ +  +++RK  
Sbjct: 179 GEMFSPGVMIMNPAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLG 238

Query: 230 TKTRSGAIAYAVRNNIV 246
            +    AI     + ++
Sbjct: 239 VQNSLEAIRLGQESGLL 255


>gi|209696228|ref|YP_002264158.1| transcriptional regulator, LuxR response regulator receiver
           [Aliivibrio salmonicida LFI1238]
 gi|208010181|emb|CAQ80508.1| transcriptional regulator, LuxR response regulator receiver
           [Aliivibrio salmonicida LFI1238]
          Length = 209

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 66/231 (28%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +                   
Sbjct: 6   TIIIADDHPLFRNALFQSIHMAISGANLLEADSLDALLTVLEK--------------EPD 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++         +           +    
Sbjct: 52  PDLLLLDLKMPGSNGMSGL--IHLRSQYPDLPIVVVSASEESSIV------SQAKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               + D    +   LT 
Sbjct: 104 GFIPKSSDMRSLISALNQILAGDSYFPEGSIKNNQ-----------ACDDLATRISSLTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+ +
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNRTQAVIF 203


>gi|83719547|ref|YP_442392.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|167581308|ref|ZP_02374182.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
 gi|167619391|ref|ZP_02388022.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis Bt4]
 gi|257138594|ref|ZP_05586856.1| LuxR family DNA-binding response regulator [Burkholderia
           thailandensis E264]
 gi|83653372|gb|ABC37435.1| DNA-binding response regulator, LuxR family [Burkholderia
           thailandensis E264]
          Length = 212

 Score = 91.1 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 36/236 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            Q  + +  +DE     +  L   +            V          E    +     +
Sbjct: 8   SQETVFVVDDDEAVRDSLRWLLEANGY---------RVQCFSSAEQFLEAYQPAQ----Q 54

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +S     +L   +                 +F      +P  ++    
Sbjct: 55  AGQIACLILDVRMSGMSGLELQERLIAEN--------AALPIIFVTGHGDVPMAVSTMKK 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    FD A +R  +  +  K               A  ++   +       +  +
Sbjct: 107 GAMDFIEKPFDEAELRKLVERMLDK---------------ARSESKSVQEQRAASERLSK 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 152 LTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|313205371|ref|YP_004044028.1| two component transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312444687|gb|ADQ81043.1| two component transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 217

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 11/225 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D       +   +        + E   G     L+         LD  +   
Sbjct: 1   MEKIILVDDHALFREGMKLLIETEGIGTVVAEAENGKEFVELLDTHTPDLVILDIEMPVM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +         K    ++              + ++        +   T     + 
Sbjct: 61  GGLEALSR-----AKKIQPDIKVLVLTMLSEKANYSDMVS---AGAMGFVLKTAGKKDLE 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  L         + L    ++         +       D  +T  E+E L ++ +G 
Sbjct: 113 KAMKTLIGGECYFSNELLR--QIIVNITTQQKIAPKSLVKIDHGITDNEMEVLRYLCQGL 170

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  +IA  +  S   V    + +++KT T      I YA++   V
Sbjct: 171 TVSQIAEKIFRSVKAVEARRSLLLKKTNTPDTINLILYAIKCGWV 215


>gi|53725082|ref|YP_102613.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67641979|ref|ZP_00440743.1| capsular synthesis regulator component B [Burkholderia mallei GB8
           horse 4]
 gi|76811092|ref|YP_333198.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121601120|ref|YP_992735.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124384327|ref|YP_001026471.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126449531|ref|YP_001080252.1| capsular synthesis regulator component B [Burkholderia mallei NCTC
           10247]
 gi|126454700|ref|YP_001065911.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106a]
 gi|134282838|ref|ZP_01769541.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           305]
 gi|167001870|ref|ZP_02267660.1| capsular synthesis regulator component B [Burkholderia mallei
           PRL-20]
 gi|167738961|ref|ZP_02411735.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           14]
 gi|167824553|ref|ZP_02456024.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           9]
 gi|167846086|ref|ZP_02471594.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           B7210]
 gi|167894656|ref|ZP_02482058.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           7894]
 gi|167903066|ref|ZP_02490271.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           NCTC 13177]
 gi|167911297|ref|ZP_02498388.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           112]
 gi|167919317|ref|ZP_02506408.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           BCC215]
 gi|217423762|ref|ZP_03455263.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           576]
 gi|226192919|ref|ZP_03788531.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811926|ref|YP_002896377.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242317427|ref|ZP_04816443.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106b]
 gi|254178165|ref|ZP_04884820.1| capsular synthesis regulator component B [Burkholderia mallei ATCC
           10399]
 gi|254180086|ref|ZP_04886685.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1655]
 gi|254188508|ref|ZP_04895019.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197245|ref|ZP_04903667.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           S13]
 gi|254199547|ref|ZP_04905913.1| capsular synthesis regulator component B [Burkholderia mallei FMH]
 gi|254205865|ref|ZP_04912217.1| capsular synthesis regulator component B [Burkholderia mallei JHU]
 gi|254258480|ref|ZP_04949534.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1710a]
 gi|254358733|ref|ZP_04975006.1| capsular synthesis regulator component B [Burkholderia mallei
           2002721280]
 gi|52428505|gb|AAU49098.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76580545|gb|ABA50020.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121229930|gb|ABM52448.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124292347|gb|ABN01616.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126228342|gb|ABN91882.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106a]
 gi|126242401|gb|ABO05494.1| capsular synthesis regulator component B [Burkholderia mallei NCTC
           10247]
 gi|134245924|gb|EBA46015.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           305]
 gi|147749143|gb|EDK56217.1| capsular synthesis regulator component B [Burkholderia mallei FMH]
 gi|147753308|gb|EDK60373.1| capsular synthesis regulator component B [Burkholderia mallei JHU]
 gi|148027860|gb|EDK85881.1| capsular synthesis regulator component B [Burkholderia mallei
           2002721280]
 gi|157936187|gb|EDO91857.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160699204|gb|EDP89174.1| capsular synthesis regulator component B [Burkholderia mallei ATCC
           10399]
 gi|169653986|gb|EDS86679.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           S13]
 gi|184210626|gb|EDU07669.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1655]
 gi|217393620|gb|EEC33641.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           576]
 gi|225935009|gb|EEH30984.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           Pakistan 9]
 gi|237502945|gb|ACQ95263.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238523017|gb|EEP86458.1| capsular synthesis regulator component B [Burkholderia mallei GB8
           horse 4]
 gi|242140666|gb|EES27068.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1106b]
 gi|243062372|gb|EES44558.1| capsular synthesis regulator component B [Burkholderia mallei
           PRL-20]
 gi|254217169|gb|EET06553.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1710a]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 17/223 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    ++ +   ++    +  + E    A    L+          D  +     
Sbjct: 4   QVLIADDHPLVLLGVRHMLAGMGDVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPA 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +                 +   +        T          S   D+  +   
Sbjct: 64  ADGLAMLTAIRDGYPS-----VRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDELPRA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  ++                +  +                +L+ RE+E +   + G T 
Sbjct: 119 LAAVYQGRP-----------FVGTHAGAAGGGAMRGTDAPRQLSPREIEVVRLCATGMTM 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +IA   G S  TV+ +  + M K   K+      YA  N +V
Sbjct: 168 TDIANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATENGLV 210


>gi|332991563|gb|AEF01618.1| putative regulator in two-component regulatory system [Alteromonas
           sp. SN2]
          Length = 217

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 14/223 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ L    D       L   +S ++    L+E  G     +   +      L   +    
Sbjct: 1   MTTLLIADDHPLYRDALRGALSLSLPALTLSEA-GDLTSTVDILNREDIDLLLLDLHMPG 59

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             DL   + + +      V                      +     +   T     I  
Sbjct: 60  SNDLFGLIHIRKLFPDVPVAVVSGTE------DTQLISKIMSAGALGFIPKTASSGDIAN 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      +  +       L+     + + +         LT  + + L ++ +G  
Sbjct: 114 AVQAILDGDVWLPPN-------LSDSVDEIDEEFSELADNVASLTPSQYKVLCFMRDGLL 166

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +I   L I+  TV  ++ +I +K     R+ A+  A +  +
Sbjct: 167 NKQIGYNLDIAEATVKAHVTAIFKKLGINNRTQAVLIASQLEL 209


>gi|333025578|ref|ZP_08453642.1| putative two-component system response regulator TcsR2
           [Streptomyces sp. Tu6071]
 gi|332745430|gb|EGJ75871.1| putative two-component system response regulator TcsR2
           [Streptomyces sp. Tu6071]
          Length = 198

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 57/221 (25%), Gaps = 24/221 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    + L R                     GA    + R        LD  +       
Sbjct: 2   LLADDEHLIRGALAALLALEDDLEVVAEAASGAEALAMARAKGPDVAVLDLQMPDGDGVS 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +          ++                           +   T    R+   + 
Sbjct: 62  VATSLRSELPGCRCLIV--------TSHGRPGHLKRALEVGVRGFVPKTVSAQRLAEIIR 113

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R +  +                   D     D  L+ RE E L + ++G    E
Sbjct: 114 TVHAGSRYVDPELAA----------------DAIAAGDSPLSAREAEVLEYAADGAPVAE 157

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA   G+S  TV NY++S + K   + R  A+  A     V
Sbjct: 158 IAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRGWV 198


>gi|294630195|ref|ZP_06708755.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833528|gb|EFF91877.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 207

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 59/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S    +  + E   G     + R        LD  +     
Sbjct: 9   RLLLADDEHLIRGALAALLSLEDDLLVVAEAASGPEALAMARAHTPDVAVLDLQMPGADG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   +           L     L               A     +   T    R+   
Sbjct: 69  VKVATSLRAE--------LPGCRVLIVTSHGRPGHLKRALAAGVRGFVPKTVSAQRLAEI 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +  +                   D     D  LT RE E L   ++G   
Sbjct: 121 IRTVHAGNRYVDPELAA----------------DAISAGDSPLTAREAEVLELAADGAPV 164

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S  TV NY++S + K   + R  A+  A     V
Sbjct: 165 TEIAERAALSAGTVRNYLSSAVTKLGAENRHAAVRLARERGWV 207


>gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae]
          Length = 921

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 17/250 (6%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +QV + L R +    +    L  + + +A    +D        +  ++  +  S  L
Sbjct: 682 LLAEQVRVRLQRGN---FTGAEQLQRQLEQMAASFRMDAEHPCQRAI-VMSASLSRSRLL 737

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL------QRPTELFCPVFHTL 116
           L R    Q   L + + SD      R  A   +  +   L            F PV    
Sbjct: 738 LARGQAPQACVLLAEMVSDQESRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLA 797

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            +       +D         +A +         KG +                A+     
Sbjct: 798 EQQHLTGLFLDAGDTLQPL-LAGMNETSSACKEKGGVHEPWADKRA------PADGTPFN 850

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   EL+ RE + L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A
Sbjct: 851 SGSPDIPGELSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQA 910

Query: 237 IAYAVRNNIV 246
           ++ A+   ++
Sbjct: 911 MSRALEMKLL 920


>gi|239994586|ref|ZP_04715110.1| response regulator (activator) in two-component regulatory system
           wtih UhpB, regulates uhpT expression (LuxR/UhpA family)
           protein [Alteromonas macleodii ATCC 27126]
          Length = 218

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 63/237 (26%), Gaps = 36/237 (15%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  + E     +  L  +         +    +                      D  
Sbjct: 3   ILIIDDHEIVRDGIKTLIEQEYGWHVSYAVSSLDALPS---------------FATLDDI 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  ++ +  FD +  +           ++         +  +           + 
Sbjct: 48  DVAILDISLAQESGFDTLVKIKKD-----APFIKCLMLSM---YDHVGYISKALELGADG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y +       +   L  L      +  D   ++        +              LT R
Sbjct: 100 YVTKNAATKELMDALEALEKDENYLSTDISKKLAFGDKQLTS-------------ILTER 146

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E    +++G    +IA  +  +  TV  +  +I +K    ++ G +  A+    +
Sbjct: 147 EKEIFLLLAKGFQPKQIAYYIDTAPKTVMVHRTNIYKKLNVTSQFGLLRIALETGYL 203


>gi|226355186|ref|YP_002784926.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226317176|gb|ACO45172.1| putative Transcriptional regulator, LuxR family [Deinococcus
           deserti VCD115]
          Length = 762

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 66/229 (28%), Gaps = 20/229 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  L        R  AL+E  G          L            D    L +      
Sbjct: 529 RLGQLPEASRCFERAQALSEEYGGGEGAAFALGLRSWVAY-LQGQQDTALPLAQVAWQHM 587

Query: 95  KDKYYNVLQRPTELFCPVFHTLP-------------ENITPPAGMDNRYCSLTFDVARIR 141
                 +L+                           E +    G     C     V R+ 
Sbjct: 588 LKVPNALLRYVLLHQMAFHARDAGQLSLAARMVGCSEAMRASTGEPWDVCFAPH-VRRLD 646

Query: 142 IGLMLLFPKGRII-----LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             L     +   +        RL ++    A              +   LTGRE + L  
Sbjct: 647 TALRTAMGERYEVCRQEGSALRLEDLVPDVAAMLENAVQTTYAETRVTPLTGREQDVLRL 706

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++G +   IA  L IS  TV+ +++S++ K     R     +A+RN +
Sbjct: 707 LAQGISDKRIAQQLNISAATVSKHVSSMLSKLGVHNRVELARWALRNGL 755


>gi|94985596|ref|YP_604960.1| LuxR family transcriptional regulator [Deinococcus geothermalis DSM
           11300]
 gi|94555877|gb|ABF45791.1| transcriptional regulator, LuxR family [Deinococcus geothermalis
           DSM 11300]
          Length = 197

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S       +  G++       ++    L  +           +   +    D  
Sbjct: 79  GGWAVLSPDAAPTELLAGILGAAAGLAVLPPTLLPSL----FSAGEDEEEAALPLSGDVT 134

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L  ++ G ++   A  LG+S +TV  ++ ++  K   ++R+ A+   ++  +
Sbjct: 135 LTPRERDVLALLAAGLSNKRAARELGVSESTVKFHVQAVYSKLGVQSRAAAVTRGIQLGL 194

Query: 246 V 246
           +
Sbjct: 195 L 195


>gi|108804775|ref|YP_644712.1| two component LuxR family transcriptional regulator [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766018|gb|ABG04900.1| two component transcriptional regulator, LuxR family [Rubrobacter
           xylanophilus DSM 9941]
          Length = 208

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 16/195 (8%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
              L + +     +          + D ++      + V   A+    +        + +
Sbjct: 26  ARGLIDILDPDARIHYAESAPSGDRPDIVLFCAGGAEDVGE-AVRRLQEQAPG---ASVV 81

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
              +   L             +     + +++   L +       + RD L ++      
Sbjct: 82  VFGLSSDLNLARAGLQAGAKGFVHAGMEPSQVVRALTVAASGEVAVPRDLLKDLV----- 136

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT R+ E L  ++EG+T+ +I   L +S +TV  ++ +  +  
Sbjct: 137 -------AGREPVDLSGLTHRQQEILKLVAEGQTNAQIGRRLFLSESTVKQHLRAAYKVL 189

Query: 229 ATKTRSGAIAYAVRN 243
             + R+ A       
Sbjct: 190 KVRNRTEAAKLIRER 204


>gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 215

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 66/199 (33%), Gaps = 9/199 (4%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
             +++   G S   +      Q +    I       D  +    S  D   +VL  P + 
Sbjct: 19  AASISSATGLSCECIDVLPPAQGRAE--IGQRMMLIDWQQLDGDSRWDALGDVLGDPMQT 76

Query: 109 FCPVF----HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +       L                    +  +  G+  +        R  + E   
Sbjct: 77  MDTILFNVPTGLDIERQALDRGVRGIFRQNQPLKLLMRGITAVLEGELWYSRRAISER-- 134

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L   Q           GK+  L+ RE E L  I++G ++DE+   L IS +TV  ++ +I
Sbjct: 135 LRQNQLTQASPKAASAGKEM-LSAREREVLLLIAQGLSNDEVGDKLCISLSTVKKHLCNI 193

Query: 225 MRKTATKTRSGAIAYAVRN 243
             K     R  A  +AV+N
Sbjct: 194 YAKLKISNRIQAAFWAVQN 212


>gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
 gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22]
          Length = 255

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI    
Sbjct: 190 PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQ 249

Query: 242 RNNIV 246
            + ++
Sbjct: 250 ESGLL 254


>gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 245

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI    
Sbjct: 180 PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQ 239

Query: 242 RNNIV 246
            + ++
Sbjct: 240 ESGLL 244


>gi|326201441|ref|ZP_08191312.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
 gi|325988041|gb|EGD48866.1| two component transcriptional regulator, LuxR family [Clostridium
           papyrosolvens DSM 2782]
          Length = 210

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 60/190 (31%), Gaps = 15/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G         +      +D  +     F+  R +      +   V+          F+  
Sbjct: 36  GKEALDFCNSNTPDMIIMDLKMPELDGFEATRLI-KHMYSEIKIVI-------LSTFNDE 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + + +    +  +   +  +    R+     L       +   +   + 
Sbjct: 88  VSVTKAVKYGADGFITKDMGLLELHHSIRSIHIGLRVFEDSVL-------SNIVSKIDTV 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                K  +++ RE+  +  I++GK+  EI   L ++  TV N +  ++ +   K R   
Sbjct: 141 SAEPEKAIDISPREISIIKLIADGKSYKEIGETLYLAEGTVRNIVYKLLSQLDLKDRIQL 200

Query: 237 IAYAVRNNIV 246
             YA +  ++
Sbjct: 201 AVYAAKRKLI 210


>gi|163747623|ref|ZP_02154970.1| probable transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
 gi|161379093|gb|EDQ03515.1| probable transcription regulator protein [Oceanibulbus indolifex
           HEL-45]
          Length = 241

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRII--------LRDRLWEIGLLAAYQANMFKSYDVH 179
           +   + +     +   L  +   GR +            +  +   A       +     
Sbjct: 102 HGVLNASETPEVLSAALGFIIAGGRYVPHVRASEAAPSEMSYLPQPAEAPLGPIQLLAAE 161

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + +LT R+ E L  ++ G ++ EIA  L +S  TV +++  +MRK     R+ A   
Sbjct: 162 NPDNPDLTRRQYEVLYALANGHSNKEIARDLELSEATVKSHVRQVMRKLHVDNRTQAALL 221

Query: 240 AVRN 243
           A   
Sbjct: 222 ARDL 225


>gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42]
 gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208]
 gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus
           amyloliquefaciens LL3]
          Length = 74

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|24371949|ref|NP_715991.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24345792|gb|AAN53436.1|AE015483_2 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 198

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L++   F     D  +      +L   +             +   +    F   
Sbjct: 34  GDEALTLLKQQHFDLLLTDIEMPGRTGLELAAWLKEQHS--------QTKVVVITTFGRA 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +         +   +  +    R+I      E+ ++A          
Sbjct: 86  GYIKRAIEAGVGGFLLKDAPSETLVSSIQQVMAGKRVIDP----ELAMMAI--------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    L  +E   L + SEGK++ EIA +L I+  TV NY++  + K     R  A
Sbjct: 133 ----GDIDPLNDKERRALRFASEGKSTAEIADMLFIAEGTVRNYLSEAIAKLNASNRIDA 188

Query: 237 IAYAVRNNIV 246
              A +   +
Sbjct: 189 ARIAKQKGWL 198


>gi|146291641|ref|YP_001182065.1| response regulator receiver protein [Shewanella putrefaciens CN-32]
 gi|145563331|gb|ABP74266.1| two component transcriptional regulator, LuxR family [Shewanella
           putrefaciens CN-32]
          Length = 200

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 57/208 (27%), Gaps = 36/208 (17%)

Query: 39  LDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  +    G                         LDS +      ++ + 
Sbjct: 10  VDDDDAILDSLGFMLRQFGYQVQTFNNGRDFLEQCPLSEAGCVILDSRMPEITGQEVQQK 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  +              +F      LP  ++        +         +   +     
Sbjct: 70  LIETHSP--------LGVIFLTGHGDLPMALSAFRKGACDFFQKPVSGKALVQAI----- 116

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                      +   LA +             K  +LT RE + L  + +G T+ +I+  
Sbjct: 117 --------EKAQCESLATF------EKQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEA 162

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +S  T+  + A IM+K      +  +
Sbjct: 163 MFLSLRTIEVHRAKIMKKLEVNNMAELV 190


>gi|237713861|ref|ZP_04544342.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262409230|ref|ZP_06085774.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294645794|ref|ZP_06723478.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294809468|ref|ZP_06768172.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446017|gb|EEO51808.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262352977|gb|EEZ02073.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292638873|gb|EFF57207.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443340|gb|EFG12103.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 255

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI    
Sbjct: 190 PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQ 249

Query: 242 RNNIV 246
            + ++
Sbjct: 250 ESGLL 254


>gi|228957309|ref|ZP_04119070.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228802342|gb|EEM49198.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 217

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S T   +++   +        ++    L ++   +          D     D  
Sbjct: 95  GVIGLVSKTSSPSQLVNAIRCAIRDEAVLPVTLLRQLRRTSLKV------LDDQSNIDVT 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +T  E   L  I +G T+  I+  L +S+ T+ + +  I +K    +R  A+A A    +
Sbjct: 149 VTEEEQAILIEIDKGLTNKSISQKLHVSQRTIEHRLTLIFQKLNVTSRIKAVAKAKELGL 208

Query: 246 V 246
           +
Sbjct: 209 I 209


>gi|217971562|ref|YP_002356313.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217496697|gb|ACK44890.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 198

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 25/190 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L++   F     D  +      +L   +             +   +    F   
Sbjct: 34  GDEALGLLKQQSFDLLLTDIEMPGRTGLELAAWLKDQHS--------QTKVMVITTFGRA 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +         +   +  +    R+I      E+ ++A          
Sbjct: 86  GYIKRAIEAGVGGFLLKDAPSETLVNAIQQVMAGKRVIDP----ELAMMAI--------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    L  +E   L   SEGK++ +IA  L I+  TV NY++  + K     R  A
Sbjct: 133 ----GDVDPLNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDA 188

Query: 237 IAYAVRNNIV 246
              A +   +
Sbjct: 189 ARIAKQKGWL 198


>gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5]
 gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE
 gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory
           Protein Gere
 gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis]
 gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580]
 gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032]
 gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195]
 gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2]
 gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5]
          Length = 74

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|78066914|ref|YP_369683.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|115352227|ref|YP_774066.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria AMMD]
 gi|116690160|ref|YP_835783.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|134296321|ref|YP_001120056.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|167586726|ref|ZP_02379114.1| response regulator receiver protein [Burkholderia ubonensis Bu]
 gi|170703358|ref|ZP_02894143.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|170733493|ref|YP_001765440.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|171318540|ref|ZP_02907691.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|172061094|ref|YP_001808746.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|254251954|ref|ZP_04945272.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
 gi|77967659|gb|ABB09039.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
 gi|115282215|gb|ABI87732.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria AMMD]
 gi|116648249|gb|ABK08890.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
 gi|124894563|gb|EAY68443.1| regulatory protein LuxR [Burkholderia dolosa AUO158]
 gi|134139478|gb|ABO55221.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
 gi|169816735|gb|ACA91318.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
 gi|170131735|gb|EDT00278.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria IOP40-10]
 gi|171096282|gb|EDT41189.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171993611|gb|ACB64530.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
 gi|325527278|gb|EGD04647.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 212

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 38/236 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q  + +  +DE     +  L       +      +  +          +           
Sbjct: 9   QETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ----------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +S     +L   +                 +F      +P  ++    
Sbjct: 58  ---IACLILDVRMSGMSGLELQERLIADN--------AALPIIFVTGHGDVPMAVSTMKK 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    FD A +R  +  +  K               A  ++   +       +  +
Sbjct: 107 GAMDFIEKPFDEAELRKLVERMLDK---------------ARSESKSVQEQRAASERLSK 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 152 LTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|227886355|ref|ZP_04004160.1| transcriptional regulator NarL [Escherichia coli 83972]
 gi|227836559|gb|EEJ47025.1| transcriptional regulator NarL [Escherichia coli 83972]
 gi|307553277|gb|ADN46052.1| nitrate/nitrite response regulator protein [Escherichia coli ABU
           83972]
          Length = 216

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPDITVVDEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|194291803|ref|YP_002007710.1| response regulator, luxr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225707|emb|CAQ71653.1| putative Response regulator, LuxR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 220

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 36/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +    ++L  +     + +  +   S  +A +I           M A+ ++ GA      
Sbjct: 11  MPDACLLLIDDHTLFRTGLRLVLADSPSVAHIIEAG------SVMQAVQDHGGA------ 58

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + V+ +             R   L       L        
Sbjct: 59  ---AVDIVLLDIQMPGLNGIEGVKVLRRH--------FGRARILIVSGTSGLEIIPAEVR 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   + D   I   +      G     +        A Y A+             
Sbjct: 108 REIAGFLPKSADAHEIEDAIACCLAGGTYFSGEANAVAAPQAPYAAS------------- 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R++E L  ++ G+++  IA  +G+S NTV  ++A+I+      +R  AI  A R  
Sbjct: 155 TLTPRQLEVLHQLTLGRSNKVIAYHMGLSENTVRVHVAAILDHLGVVSRVEAILEAQRRG 214

Query: 245 IV 246
           +V
Sbjct: 215 LV 216


>gi|145588751|ref|YP_001155348.1| two component LuxR family transcriptional regulator
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047157|gb|ABP33784.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 197

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT R+ E L  IS G ++  IA  L IS  TV  ++  I +K     R+ A+  A  N
Sbjct: 135 TQLTDRQKEILAHISNGDSNKMIAYSLNISEQTVKVHLGEIFKKIKVFNRTQAVIKAKEN 194

Query: 244 NIV 246
             V
Sbjct: 195 GWV 197


>gi|46203133|ref|ZP_00208813.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 221

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 13/213 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFL----LVRWDLFQEQKLDSIVSSDWPFDLVR 88
            + ++ +D           + E  G    +    +V       +    +V  D  F    
Sbjct: 11  ASPVLVIDDHPIVLQGCRRVLEDAGIETVVEATGVVSGYRAFHRLRPPVVICDLTFQGSG 70

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L+   +   +      L   + +               Y         +      + 
Sbjct: 71  LAGLALIRRMRAIEPETRVLVFSMHNDPVIVSRALEAGALGYVLKDHASNELFQAFDRVR 130

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                + R    E+ +L           D     + +LT RE + L  +++GK+   IA 
Sbjct: 131 AGEVYLDRRLATEVAML---------RADPRRTPETQLTPREQQILARLAQGKSYGTIAA 181

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            L +S  TV N  + + +K   +T +  I  AV
Sbjct: 182 DLSVSYKTVTNACSQMRQKLKVRTLAELIHVAV 214


>gi|323138697|ref|ZP_08073763.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322396052|gb|EFX98587.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 229

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 17/222 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V  +    D    +      +S    +     +                  LD  +   
Sbjct: 18  IVMRVLIVDDHPMVIEGCRGMLSGQKDIEVSEAHNADEALEKFASLAPDVIVLDINLPGV 77

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
             F+L+R +     +           +   +                 Y + + D     
Sbjct: 78  SGFELLRLLLKRNSN--------AKIIVFTMNDDPVFAARAIERGARGYLAKSEDPKAFI 129

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R +  +   ++          F    +       L  RE+E L  ++ GK
Sbjct: 130 KAIRSVGAGERYLSGNLALKLA---------FGDQSLTRNPLDALNSREIEILRNLANGK 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              EIA IL IS  TV N    + RK   ++++  +  AV N
Sbjct: 181 DMAEIAYILKISYKTVANNCVLLKRKLGARSKADLLRIAVEN 222


>gi|298249263|ref|ZP_06973067.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547267|gb|EFH81134.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 889

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 74/268 (27%), Gaps = 29/268 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRW 66
           V + L ++ +++      L  R +++         +  T    AL E   G     +   
Sbjct: 622 VLLALIKQAQEQIDESLALLRREEMVGHQKQFAPAIQVTRAYQALLEVRRGHVQAAIPWM 681

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA-- 124
             F++Q +   ++S    +      +          +R       +              
Sbjct: 682 RDFEQQTVSYPLTSRNEREYHILARVQLAAGNDAEAERVLAQMLTLAEEEGRMRAVIKTK 741

Query: 125 --------------------------GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                                          Y     +       L+      +      
Sbjct: 742 VLQALVFQAKGATERAMSTIIQALVLAEPEGYVFTFTEEGAEMARLLKAVHAAQRTGSLA 801

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           L           +              L+ RE E +  ++ G ++ EIA  L I+ +TV 
Sbjct: 802 LRLAPEYLQRLLDACAERRTSSSSHILLSEREREIVRLLASGLSNQEIADHLVIAMSTVK 861

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  I  K    +R+ AIA A   N++
Sbjct: 862 WHVRQIFNKLGVNSRTQAIAQARELNVL 889


>gi|91777231|ref|YP_552439.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91689891|gb|ABE33089.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 203

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 28/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +   P     +A ++  D  +             G     +V  +      +D  +
Sbjct: 3   RIVIIDDHPIIRGTIASVLRADPELDLIGTCG-----DGEEGLAMVLTENPDLVIIDLDL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L+R +   +      VL    E     +          +   N Y     +++
Sbjct: 58  PRLDGLSLIRRIREKDTKICILVLSAKPEHIMAGYTR--------SAGANGYVGKGREIS 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +         D    +   +   A               L+ REVE L +++
Sbjct: 110 ELVTALKTVLFGYDCFPADSADAVAAASGLSA---------------LSAREVEVLQYLA 154

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ +IA  L +S  TV+ Y + I  K    + +G I +A  + ++
Sbjct: 155 RGVSNRDIAGRLSLSDKTVSTYKSRIQEKLGLSSLAGLIEFATSHRLI 202


>gi|325067500|ref|ZP_08126173.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
 gi|326772178|ref|ZP_08231463.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           viscosus C505]
 gi|326638311|gb|EGE39212.1| nitrate/nitrite response regulator protein NarL [Actinomyces
           viscosus C505]
          Length = 223

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 5/217 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     +  +    G    +     +  +Q +D ++      
Sbjct: 10  RVLIVDDDPLIRTTFAEQLDSQRAITVVAAASGGRQAI--SLLMTGQQPIDVVLLDSDMP 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+          + +  +         VF          A   N + +       +   L
Sbjct: 68  DMDGAQTARAIYERFPRMPIVMF---TVFSRDEMLAEALAEGVNGFITKDESTENVAAAL 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +       ++       +      +     +         EL  R  +  T + EG T+ 
Sbjct: 125 LRASRGEPVMSSRPTKMLVSAYQSEQKRATAEARIQELVNELPPRLRDIYTCLLEGLTNR 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            IA  LGIS NTV  Y++ ++ +    +R+  IA A+
Sbjct: 185 RIARKLGISENTVRIYVSEVLHRLGHTSRTELIAAAL 221


>gi|298290106|ref|YP_003692045.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926617|gb|ADH87426.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 205

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 21/186 (11%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA+   + R  +     LD  +      D+++ +          +     +   P     
Sbjct: 37  GAAFLSVARTHVPACIVLDVHMPGRSGLDILKELEADRYP--APIFIISGQGDIP----- 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         +    FD   +   +                ++              
Sbjct: 90  -MAVDAIRHGALDFIEKPFDADTVVERVRDAIEAHSRRGSSEPGDL-------------L 135

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             H+     LT RE E L  I+ G ++ E    LGIS  T+  + A IM K   K  +  
Sbjct: 136 TAHFPGHEMLTPREREVLVQIASGASNKEAGRKLGISPRTIEVHRARIMEKLGAKNAADL 195

Query: 237 IAYAVR 242
           +   ++
Sbjct: 196 VRIVLK 201


>gi|296140194|ref|YP_003647437.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296028328|gb|ADG79098.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 208

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 16/214 (7%)

Query: 32  LLARMIPLDCTVSWTMRMYALT------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +  R++  D        + A+       E V A        +    Q     +       
Sbjct: 1   MTVRVLVADDDPIVREYLRAVLSAEPDLEVVAAVADGAAAVESGIAQAPHVALLDVRMPG 60

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +A          +             L + +         +   T +   +   + 
Sbjct: 61  VDGIVATRALRDLDPPVAVVLITTLDTDAVLVDGLA---AGAAGFVVKTAEPPLLASAVR 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                G ++  D L  +  LA          D        L  RE + L  ++ G ++ E
Sbjct: 118 TAASGGSLLSPDALARLVRLAGELPRRDPRLDA-------LGVRERDVLRELACGSSNAE 170

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IA  L ++ +TV  Y++++M +     R+     
Sbjct: 171 IAARLFLAESTVKGYVSALMTRLDCANRTQLALL 204


>gi|84393053|ref|ZP_00991819.1| Response regulator [Vibrio splendidus 12B01]
 gi|84376305|gb|EAP93187.1| Response regulator [Vibrio splendidus 12B01]
          Length = 209

 Score = 90.7 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +                 D 
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKK--------------EDE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IQLRAEYPDLPIV------VISASEDASVVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               +      K   LT 
Sbjct: 104 GFIPKSSDMRELVSALNQVLNGDPFFPEGLITN-----------NAACSDLAEKLSTLTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|298253870|ref|ZP_06977457.1| two component transcriptional regulator, LuxR family [Gardnerella
           vaginalis 5-1]
 gi|297532013|gb|EFH70988.1| two component transcriptional regulator, LuxR family [Gardnerella
           vaginalis 5-1]
          Length = 227

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 11/233 (4%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +    + R   V          + +I    T +           +     +L R     E
Sbjct: 1   MIDRKKIRVIIVDDQKAIRYGFSMIINKSATCTVIGSCENGLVALD----MLERLSASGE 56

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
           Q  + I+       +   +A       Y  ++         +          +   + + 
Sbjct: 57  QLPEIIIMDIRMPVMNGIIATKHIKTKYRNIKIL---ALTTYDYDDYAFKMLSSGASGFL 113

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FELTGR 189
                  ++   +  +     ++      +I  LA + + +  S DV   +     LT  
Sbjct: 114 LKDVRGPQLISAIEAINAGDAVLTPRITGKI--LARHVSQISASQDVQIARAKFDALTEH 171

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E+E ++ +S G  + EIA  L I  ++    ++ I+ K   + R       ++
Sbjct: 172 EIEIVSLVSCGLNNAEIAEKLFIEPDSAKKAVSRILAKLGMRDRVQLAIEWIK 224


>gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
 gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Klebsiella variicola At-22]
          Length = 921

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 75/249 (30%), Gaps = 15/249 (6%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +QV + L R +    +    L  + + +A    +D        +            L
Sbjct: 682 MLAEQVRVRLQRGN---VTGAEQLQRQLEQMAASFRMDAEHPCQRAIALSASLSHCRLLL 738

Query: 63  LVRWDLFQEQKLDSIVSS--DWPFDLVRCMALSEKD---KYYNVLQRPTELFCPVFHTLP 117
                      L  +V+   +    L      +                  F PV     
Sbjct: 739 ATGQAPQACILLAYMVADQENRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAE 798

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +       +D         +A +         +G +                A+      
Sbjct: 799 QQHLTGLFLDAGDTLQPL-LAGMNESSSAGKEEGGVHEPWADKRA------PADGTPFNS 851

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                  EL+ RE++ L  I+EG+ + EIA  L IS  TV  +I +I  K    +R+ A+
Sbjct: 852 GSPDIHGELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAM 911

Query: 238 AYAVRNNIV 246
           + A+   ++
Sbjct: 912 SRALEMKLL 920


>gi|108803724|ref|YP_643661.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108764967|gb|ABG03849.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 253

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 16/186 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L   D  + +            +L+R +A          L   T            + 
Sbjct: 83  VALAVLDGARLRPKGLDERKSGERELLRALAERG------ELTPTTAAMRTSLTVDEASK 136

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +     +   I   L                E        +      D   
Sbjct: 137 MLEELARKGHLRPRAEDGAISYALR----------ERDRRETPGEDPAPSEAEFGGDAPR 186

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  L+ RE+E L  I+ G+T+ EI   L +S  TV ++  SI RK   + R+ AIA A
Sbjct: 187 RLDEPLSERELEVLKHIASGRTNSEIGRHLYVSVGTVKSHTGSIYRKLGVRNRAEAIARA 246

Query: 241 VRNNIV 246
               ++
Sbjct: 247 RELKLL 252


>gi|167563375|ref|ZP_02356291.1| response regulator receiver protein [Burkholderia oklahomensis
           EO147]
 gi|167570543|ref|ZP_02363417.1| response regulator receiver protein [Burkholderia oklahomensis
           C6786]
          Length = 212

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 38/237 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q  + +  +DE     +  L       +      +  +          +          
Sbjct: 8   SQETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ---------- 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +S     +L   +                 +F      +P  ++   
Sbjct: 58  ----IACLILDVRMSGMSGLELQERLIAEN--------AALPIIFVTGHGDVPMAVSTMK 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +    FD A +R  +  +  K               A  ++   +       +  
Sbjct: 106 KGAMDFIEKPFDEAELRKLVERMLDK---------------ARSESKSVQEQRAASERLS 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 151 KLTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|150398035|ref|YP_001328502.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150029550|gb|ABR61667.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 262

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL--AAYQANMFKSYDVH 179
              GM +    L   +      + LL   G       L  +          +        
Sbjct: 114 VEEGMIHGVLPLNLHLDVCLTAIDLLMKGGEHFPAALLRRLAPKNPGERDFSGPNETASE 173

Query: 180 WGKD--------FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            G            LT RE++ L  I  G  +  IA  LG+S NTV  ++ +I +K   +
Sbjct: 174 NGNPERSKGLGQVVLTTREIQILDLICMGTQNKIIADRLGLSENTVKVHVRNIYKKMNVR 233

Query: 232 TRSGAIAYAVRN 243
            R+ A +   R+
Sbjct: 234 NRTEAASRYFRS 245


>gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 509

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 74/249 (29%), Gaps = 18/249 (7%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E ++      R+ E+R +    +      +A  I             A     G   
Sbjct: 255 MDLEPRKQAEHALRQSEERFAKAFRVAP----VATAIVTAERFEMLDVNDAFIALTGYPL 310

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS-----EKDKYYNVLQRPTELFCPVFHT 115
             +    +        + +      L+   +       +   +   ++        V   
Sbjct: 311 DEIRGKSVSSIGLWVDLDAFGHAAALLTRDSRLLNVDIQIRSHDGEVRDCLISADSVSIH 370

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
             + I     + +           + + +           R       L+         +
Sbjct: 371 DQDCI--LFALLD-ISDRKRSETEMVLAIETAMQDASWFSR------MLIEKLANVRRTN 421

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +  +LTGRE E    +  G    EIA+ L +S NTV N++A+I  K    +R+ 
Sbjct: 422 SPDAGAQLSDLTGREREVFDLLCRGLADKEIAIKLNLSPNTVRNHVATIYGKLDVHSRTE 481

Query: 236 AIAYAVRNN 244
           AI +A    
Sbjct: 482 AIVWARERG 490


>gi|256389975|ref|YP_003111539.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356201|gb|ACU69698.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 208

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 68/225 (30%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           V  L    D       L   ++    +  + E   G       +    +   LD  +   
Sbjct: 8   VVRLLLAEDQAMVRGALATLLNLEDDLEVVAEVGRGDEVLAAAKAADVRVALLDIEMPGM 67

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D    +           +     +    F              + +      VA + 
Sbjct: 68  SGLDAADALHR--------AMPEVRIIILTTFGRPGFLRRAMESGASAFLVKDAPVAELV 119

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R+I  D                         +  LT RE + L   ++G 
Sbjct: 120 AAIRKVLRGERVIDPDLAAAALAAG----------------ENPLTPRERDVLAASADGS 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  +IA  L +S  TV NY+++ ++KTA + R+ A+  A +   +
Sbjct: 164 TIADIARRLHLSEGTVRNYLSACIQKTAARNRTEAVRTAQQRGWL 208


>gi|261337582|ref|ZP_05965466.1| DNA-binding response regulator [Bifidobacterium gallicum DSM 20093]
 gi|270278003|gb|EFA23857.1| DNA-binding response regulator [Bifidobacterium gallicum DSM 20093]
          Length = 218

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 62/225 (27%), Gaps = 18/225 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            + + V   P     +  ++    T          + + G +              +D  
Sbjct: 1   MKVAIVDDDPIVCTSIGTILTATKTAEVI-----WSAHDGVAAVREYERHEPDVLLIDVQ 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +             +   L    F                Y     DV
Sbjct: 56  MPDMDGLQASELILN--------AHPQARILILTTFADPEYIRRAVELHTKGYLIK-QDV 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAY----QANMFKSYDVHWGKDFELTGREVEC 193
           A +   +  +     ++  + L ++ +L                    +   LT RE + 
Sbjct: 107 ASVIPAVQAVMAGQVVLGAEVLQQLPMLGTQGSAMTDAAAMDAGHSDERFEGLTERERDI 166

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              ++EG  + +IA  L +S  TV N I+ I+ KT    R+    
Sbjct: 167 AALVAEGLDNRQIAAQLYLSEGTVRNRISDILAKTNISNRTKLAV 211


>gi|146311964|ref|YP_001177038.1| transcriptional regulator NarL [Enterobacter sp. 638]
 gi|145318840|gb|ABP60987.1| two component transcriptional regulator, LuxR family [Enterobacter
           sp. 638]
          Length = 216

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 73/242 (30%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + ++ +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVRQLVSMAEDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          V          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATSDRDV 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  ++
Sbjct: 154 TQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQD 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|288962972|ref|YP_003453266.1| two-component response regulator [Azospirillum sp. B510]
 gi|288915238|dbj|BAI76722.1| two-component response regulator [Azospirillum sp. B510]
          Length = 216

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 33/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + ++    ++   A ++           + A                 
Sbjct: 4   RILIADDHPLMRTALTQTIGQAIPGAVILEASRFEQIKPLLEA----------------- 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
              +  D I+       +   + L         +                         +
Sbjct: 47  --GEPPDIILLDLHMPGMSGLIGLMMLRSEQPAIPVIVVS---ASEDPVTIQRAIDYGAS 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +    +I   +  +      +                           +   LT 
Sbjct: 102 GFVPKSAPNTQIIEAIHAVLDGELWLPEIN-----------GGPETEAPDPARRAATLTP 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +++  L  I+EGK + +IA  + ++  TV  ++ +I+RK    TR+ A   A +  +
Sbjct: 151 QQLRVLAGIAEGKLNKQIAYEMNVAETTVKAHVTTILRKLGVLTRTQAAVLASQLAL 207


>gi|163735876|ref|ZP_02143304.1| transcriptional regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
 gi|161390812|gb|EDQ15153.1| transcriptional regulator, LuxR family, putative [Roseobacter
           litoralis Och 149]
          Length = 239

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 23/226 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H      L + +  +   V          + +G +   +      +    D  +     
Sbjct: 21  DHPLYSDALESALELVLTDVEIKK-----VQSLGDAIAAVKDGFKPELVMFDLKLPDVTG 75

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                        ++    +         F       +        +         ++  
Sbjct: 76  ISGF-----VSLRQHLPKARILVISSLASFDL---VQSLLREGAAGFLPKDTSARGLKSV 127

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +      + +D            A+ F        K  ELT ++   +  I  GK +
Sbjct: 128 LSEIIAGQTYVPKDYQQPNSCERDALADEF-----QHPKLAELTPQQQRIMRLICFGKPN 182

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAI-----AYAVRNN 244
            +IA  L ++  TV  +I +++R+   + R+ A+     A A +  
Sbjct: 183 KQIAYELDLAEATVKAHITALLRRLGVRNRTQAVVLVEGAMAAQRG 228


>gi|62550953|emb|CAI79307.1| GacA like protein [Aeromonas caviae]
          Length = 163

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 50/168 (29%), Gaps = 18/168 (10%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR-PTELFCPVFHTLPENITPPAGMD 127
             +   +  +      +  R +           ++     +   +    P          
Sbjct: 13  VDDLSSEMNMPGIGGLEATRKI---------PRIRPDVRIIVLTIHSENPFPTKVMQAGA 63

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +       +   + L+    R I  +   ++ L     A+              L+
Sbjct: 64  AGYLTKGAAPDEMIHAIRLVHSGQRYISPEIAQQMALSQFASADE--------NPFKSLS 115

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            RE++ +  I++G+   +I+  L +S  TVN+Y   +  K        
Sbjct: 116 ERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLGINGDVE 163


>gi|333005061|gb|EGK24581.1| response regulator [Shigella flexneri VA-6]
          Length = 216

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 71/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +   I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +          +          V +   + +T   
Sbjct: 49  ESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVIF--------SVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDV 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|90407954|ref|ZP_01216128.1| putative response regulator (repressor) in two-component regulatory
           system with UhpB (LuxR/UhpA family) [Psychromonas sp.
           CNPT3]
 gi|90310968|gb|EAS39079.1| putative response regulator (repressor) in two-component regulatory
           system with UhpB (LuxR/UhpA family) [Psychromonas sp.
           CNPT3]
          Length = 202

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 31/222 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ--KLDSI 77
            + +          A+++ L+  +       +  +               Q     +D  
Sbjct: 4   VALIDDHVIVRSGFAQLLSLETDIKIVAEFSSAAQARQ-------GLPGIQAHVCIIDIS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +  +    L+  +                 +   V  ++             Y S     
Sbjct: 57  MPDESGLSLLEDLPSGLAC-----------IMLSVHDSVAIIEKSLQLGALGYLSKRCSP 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +      +  +            A   KS         +LT RE +    +
Sbjct: 106 DELIQAVREVATGKVYLTPE-----------LAAKLKSAVAAPLAINQLTKREDQISRLL 154

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + G     IA +L +S  T++ + A+ M+K   K       Y
Sbjct: 155 ANGLEIKTIADMLNLSPKTIHVHRANAMQKLHVKNNVALAKY 196


>gi|315505170|ref|YP_004084057.1| two component transcriptional regulator, luxr family
           [Micromonospora sp. L5]
 gi|315411789|gb|ADU09906.1| two component transcriptional regulator, LuxR family
           [Micromonospora sp. L5]
          Length = 256

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   +++    E     V  +      L+ +     +V               +   + 
Sbjct: 23  VRPTTLMIVDGHELIRHGVRQILETEQDLSVVAEAGDSV---------------TAVTVS 67

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +    P   VR +     D           +   +            
Sbjct: 68  TAVRPDVVVLDIEIPGGDPVGTVRRIREGSPD--------TAVIILSMLDGPELVRDLLE 119

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   +     +   +  +      +                +      V+  +D 
Sbjct: 120 VGVRGYLHKSVARHDLVSAVRAVSRDRARV------------VLGVSRSSLDHVYGRRDE 167

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L   +EG ++ +IA  L ++  TV  ++ +I  K +  +R  A+  AV  +
Sbjct: 168 VLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAVNKAVAAS 227

Query: 245 IV 246
           I+
Sbjct: 228 II 229


>gi|300022829|ref|YP_003755440.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524650|gb|ADJ23119.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 18/221 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    D    +       +    +  +     A+  L ++ D      +D  +      +
Sbjct: 3   LLVVEDHPIVISGCRALFTEDAGVTMIEARTAAAARLALKNDAPDVSVIDINLPDGSGLE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R         +    +           T    I         Y S     + ++  + 
Sbjct: 63  LTREFIA-----HDPEAKIVVFSM---SDTPMLAIQAVECGAKSYVSKNGSPSDLKDAVF 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      I  D + E+ LL A             G    L+ RE + L  ++ G++  E
Sbjct: 115 AVARGEIWISDDLIQEMALLRAKAF----------GATTFLSEREHQVLRMLARGRSMAE 164

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  + +S  TV    A +  K   +T S  I  AV   +V
Sbjct: 165 IANDISVSYKTVAADCAMLRTKLGARTSSELIRIAVELKLV 205


>gi|218710848|ref|YP_002418469.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32]
 gi|218323867|emb|CAV20228.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 209

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +                 D 
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKK--------------EDE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +  + L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--IQLRAEYPDLPIV------VISASEDASVVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               +      K   LT 
Sbjct: 104 GFIPKSSDMRELVSALNQVLNGDPFFPEGLITN-----------NAACSDLAEKLSTLTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|319785858|ref|YP_004145333.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464370|gb|ADV26102.1| two component transcriptional regulator, LuxR family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 221

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 30/236 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +     R    A +   D   +    + A                
Sbjct: 1   MTILIADDHPLFREALRGSIQRILPGAELHEADSVDALYGLVEA--------------HP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +     F  +  +          V+         V     +         
Sbjct: 47  DADLLLMDLNMPGAHGFSALVHLRAQHPQL--PVVVVSAREEPGVMRRALD------HGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D   I   +  +    R           +         +       +  ELT
Sbjct: 99  LGFIPKSADSETIGTAVGTVLDGERWAPAAAAAAPAV--------SRDEHEVAQRLRELT 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++   L  + EG+ + +IA  LG+S  T+  ++ +++RK     R+ A+  A R 
Sbjct: 151 PQQFRVLQMLGEGRLNKQIAYDLGVSEATIKAHVTAVLRKLGVGNRTQAVLMAGRL 206


>gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
 gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483]
          Length = 275

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
              F    +       LT RE+E L  I +G  S EIA  L IS +TVN +  +++RK  
Sbjct: 198 GEFFSPSSLIMPSSLNLTNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLG 257

Query: 230 TKTRSGAIAYAVRNNIV 246
            +    AI       ++
Sbjct: 258 VQNSIEAIRLGQETGLL 274


>gi|70732244|ref|YP_262000.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346543|gb|AAY94149.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 205

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 22/212 (10%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFL-------LVRWDLFQEQKLDSIVSSDWPFDLV 87
           R+I  D    +   M    + +     L        V       ++ DS++       L 
Sbjct: 4   RIIVADDHPLFREGMLRTIQRLLPDAVLEEAGDLAAVMALAESGEEPDSLILDLRFPGLT 63

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               ++   +      R + +   +           A   + +   +     I   +  +
Sbjct: 64  SVSMIAGLRQQLP---RTSIIVVSMVDNQDLIAEVMAAGADGFIGKSISPDEIGQAIQAI 120

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++             Y  +          +  +LT R+ E L  I++GKT+ EIA
Sbjct: 121 REGDVVV------------KYAPSGLLLPLDACAEVSQLTTRQQEVLRLIAQGKTNKEIA 168

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L IS  TV  +++S++      +R+ A   
Sbjct: 169 RELDISPFTVRIHVSSLLHTLKVPSRAAAAVK 200


>gi|115523311|ref|YP_780222.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisA53]
 gi|115517258|gb|ABJ05242.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 212

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 52/184 (28%), Gaps = 22/184 (11%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +          LD  V     F+ VR   ++              L        P     
Sbjct: 48  IAIDPRLNVAVLDLSVPGLDGFEAVRRFLVAS--------PECRVLAITAQDDGPYLRQL 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y S     A +  G+  +   G                      +      G 
Sbjct: 100 IELGVAGYVSQRSSAADLLRGIQTVGNGGLYRDPSIA--------------ERAPADRGT 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             EL+ RE+E L   + G ++  IA  L I   +V  Y A  M K    TR   +++A+ 
Sbjct: 146 AAELSTREIEVLKLAAAGHSNKTIAAKLQIGSKSVETYKARGMAKLGFHTRVEVVSFALS 205

Query: 243 NNIV 246
              +
Sbjct: 206 MGWL 209


>gi|170728910|ref|YP_001762936.1| two component LuxR family transcriptional regulator [Shewanella
           woodyi ATCC 51908]
 gi|169814257|gb|ACA88841.1| two component transcriptional regulator, LuxR family [Shewanella
           woodyi ATCC 51908]
          Length = 198

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 66/229 (28%), Gaps = 31/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ LD                G     L++   F     D  
Sbjct: 1   MRILLAEDQAMVRGALAALLSLDGEFEVIQACD------GDQALSLLKAQTFDLLLTDIE 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L +                   +    F                +       
Sbjct: 55  MPGFTGLELAQWCQQQNSTI--------KVIILTTFGRAGYIKRAIEYGAGGFLLKDAPS 106

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  G+  +    R+I      E+ ++A              G++  L+ +E + L   
Sbjct: 107 ESLIQGIKQVMAGKRVIDP----ELAIMA-------------VGENDPLSDKERKALRLA 149

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SEGKT+ EIA +L I+  TV NY++    K     R  A   A +   +
Sbjct: 150 SEGKTTSEIAALLFIAEGTVRNYLSEATSKLHGSNRIDAARIAKQKGWL 198


>gi|282859564|ref|ZP_06268669.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282587792|gb|EFB92992.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 200

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 131 KNKILSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 190

Query: 242 RNNIV 246
            +  V
Sbjct: 191 MHGYV 195


>gi|260591672|ref|ZP_05857130.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536472|gb|EEX19089.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 204

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K+  L+ RE+E L+ I +G  + EIA  L IS  TV  +  +IM K   K+ S    YAV
Sbjct: 135 KNKILSNREIEVLSLIVQGMINKEIAEKLNISLTTVITHRKNIMDKLGMKSVSALTIYAV 194

Query: 242 RNNIV 246
            +  V
Sbjct: 195 MHGYV 199


>gi|293606534|ref|ZP_06688892.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815157|gb|EFF74280.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y         +   + L+   G              A       +      
Sbjct: 100 ACARAGVAGYLPKASSPDALAAAVSLVVAGGECY-PQPAGRPQGAAHAPMQELR------ 152

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               ELT R+ E L  + +GKT  EI   +GIS  TV ++  ++  K   + ++ A   A
Sbjct: 153 ----ELTQRQEEILQLLVQGKTMREIGQHVGISVATVKSHARTLYWKLNARNQAEAAYIA 208

Query: 241 VRNNIV 246
           V+  +V
Sbjct: 209 VQMGLV 214


>gi|89073965|ref|ZP_01160471.1| putative response regulator (repressor) in two-component
           regulatorysystem with UhpB (LuxR/UhpA family protein)
           [Photobacterium sp. SKA34]
 gi|89050293|gb|EAR55797.1| putative response regulator (repressor) in two-component
           regulatorysystem with UhpB (LuxR/UhpA family protein)
           [Photobacterium sp. SKA34]
          Length = 202

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 63/219 (28%), Gaps = 27/219 (12%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
           + V          A+++ L+  +    +  +  E        L   D      LD  + +
Sbjct: 5   ALVDDHVIVRSGFAQLLALEPDMEVVGQFSSAGEA----RVGLPSLDATVC-ILDISMPN 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +    L+  +                 +   V  +        +     + S       +
Sbjct: 60  ESGLMLLEDLPS-----------GIASIMLSVHDSATVVEKALSLGAKGFLSKRCSPDEL 108

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +      G  +  D    +            S + +     +LT RE +    +S G
Sbjct: 109 VQAVRTAAQGGCYLTPDIAINLV-----------SPNCNKQALGKLTKREHQISELLSTG 157

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +AV LG+S  TV+ + A+ M K   K       +
Sbjct: 158 LDVKTVAVKLGLSHKTVHVHRANAMDKLDVKNNVELAKF 196


>gi|116249841|ref|YP_765679.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254489|emb|CAK05563.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 260

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI----GLLAAYQAN---- 171
               A + +    L   +      + LL   G       L  +      L          
Sbjct: 112 RLVEARIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPSALLNRLTNKNAQLEPSLYQTKSV 171

Query: 172 ---MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                 +  +       LT REV+ L  I +G  +  IA  L +S NTV  ++ +I +K 
Sbjct: 172 DAARSNALKLRRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKM 231

Query: 229 ATKTRSGAIAY 239
             + R+ A + 
Sbjct: 232 NVRNRTEAASR 242


>gi|327403227|ref|YP_004344065.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327318735|gb|AEA43227.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +     + +  L    +    ++ ++  +     +                  
Sbjct: 7   IRIAIAEDQSIFRNGLVKLLNDINGFEVVVAVENGLLLIESLRTT--------------- 51

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +                 L   ++              
Sbjct: 52  QVDLALIDFRMPVMNGIEATKEIRE--------FFPDVKVLLLSMYDDAEFVELAIENGA 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N Y S   +   I++ +      G  +          +A            +        
Sbjct: 104 NGYLSKDDEAEEIQMAIRSAVETGYYLSDRTSKM--FIAKMVHTGKIQPSFNENSMVLFN 161

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E+  L  I +  T+ EI+  L  S+ T+ +   S+M K   +   G + +A++N ++
Sbjct: 162 SNELTILEMICDEMTTQEISDKLFKSKRTIESARTSMMNKVGARNVVGLVMFAIQNGVL 220


>gi|299065948|emb|CBJ37129.1| putative response regulator (vsrC), LuxR family [Ralstonia
           solanacearum CMR15]
          Length = 221

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 12/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            TS +  L    D    +        +  +     +   A         + +  + D ++
Sbjct: 1   MTSSLRSLLVVDDHPLALSGTTT---FLAQALPEIQVHAAIGRRQALALIDEGIRPDVVL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDV 137
              W  D     A+ E        +             PE +          +     D 
Sbjct: 58  LDVWLSDCTGFDAMRELRGKLPEARFAFMSAE----NTPEIVAKAQALGAIGFIGKHADA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +F  G     +   ++G+      +           +  LT R+   L  +
Sbjct: 114 HAFSQAVAGIFGGGSSFPSED--DLGMTNGK--SGASHGIPITPTELGLTPRQGSVLALL 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG  +  IA  LG++ NTV  ++++I+++   +TR   I+   R  +
Sbjct: 170 LEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMERFRL 217


>gi|171058257|ref|YP_001790606.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775702|gb|ACB33841.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 219

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           +L  +       ++ L  +      +  +         +                    +
Sbjct: 4   LLVDDHSLFREGLTMLMAQRFPAVELFDVGDLNDAEAVLGT--------------EPGIE 49

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      D ++ +          V+     +           +         +
Sbjct: 50  LILLDLGLPDSQGLDSLQRLRS--------VVPEVPIVVMSADERPETILAAIDQGAAGF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T  +  I   L ++   G  + +     I    A              +   LT R+
Sbjct: 102 IPKTARIGAIESALRVVLDGGIFLPQGIYRSIAPPLADGPE-VDEAQAALMQSLGLTPRQ 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++ L  ++ G+++ +I+  L ++ +T+  ++A + R+    +RS  +  A R  +
Sbjct: 161 LDVLRLMALGQSNKQISRALSVAESTIKTHVAVVFRRLDVTSRSQVMVAAARMGL 215


>gi|167839343|ref|ZP_02466027.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           thailandensis MSMB43]
          Length = 214

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 64/216 (29%), Gaps = 9/216 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---QEQKLDSIVSSDWPFDLVRC 89
           + R++ +D        +  + E  G         D     +  K      +      +  
Sbjct: 1   MIRLLMVDRHAMLRDGLRHILEKSGEFEIDGEAGDAPSAFELVKQGRTGIALLDQTTLGH 60

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              +   +          L      +            + Y +       +   L  +  
Sbjct: 61  DCANLIHRIRRTAPSTRVLVMAARASQRHAAEAFQAGASGYLTKQSGCDELIAALRKIAA 120

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G  +  D   ++        N+    D        L+ RE E    ++ G T  EIA  
Sbjct: 121 GGVYVSMDVAEQLA------ENLHAPSDADAPPHERLSKREFEVFLHLAAGDTPAEIAQA 174

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LGIS  TV  Y A ++ K A    S  + YAV + I
Sbjct: 175 LGISAKTVRIYKAHVLDKLALPNESALVRYAVAHRI 210


>gi|21231384|ref|NP_637301.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768563|ref|YP_243325.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188991627|ref|YP_001903637.1| response regulator / transcriptional regulator,LuxR family
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21113049|gb|AAM41225.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573895|gb|AAY49305.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733387|emb|CAP51588.1| response regulator / transcriptional regulator,LuxR family
           [Xanthomonas campestris pv. campestris]
          Length = 210

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 56/226 (24%), Gaps = 21/226 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L+R++     +          + +                 +D  
Sbjct: 1   MRVIIVDDHTLVRAGLSRLLQTFSGIDVVGEASNAQQALDM-----TSLHRPDLVLMDLS 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +     ++  +                                +       
Sbjct: 56  LPGRSGLDAM-----TDVLRAAPRTHVVMMSM---HDDPVHVRDALDRGAVGFVVKDAAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + L         +         ++A                   L+ R+ E L  I
Sbjct: 108 LELELALRAAAAGQVFLSPQI--SSKMIAPMLGREKPVGIAA------LSPRQREILREI 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             G+++ EIA  LGIS  TV  + A +M     +  +  +  A ++
Sbjct: 160 GRGQSNKEIAADLGISVKTVETHRARMMESLGCRRANDLVLLAAKH 205


>gi|237711747|ref|ZP_04542228.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|229454442|gb|EEO60163.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 262

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 35/77 (45%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             MF    V       LTGRE+E L  I  G  S EIA  L IS +TV+ +  +++RK  
Sbjct: 185 GEMFSPGVVIMNPVVSLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLG 244

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI     + ++
Sbjct: 245 VHNSLEAIRLGQESGLL 261


>gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70]
          Length = 74

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D  +     LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   DKSFQPKPLLTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VIELLRMG 70


>gi|27362891|gb|AAN86997.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum]
          Length = 204

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                  T  V  I   L  +      +  D               +   +   GK   L
Sbjct: 97  VMGVVLKTSPVDSIAQALKTVSMGMVCLPDD---------GVIYEGWSVDNSVKGK---L 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 145 SERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|120600427|ref|YP_965001.1| response regulator receiver protein [Shewanella sp. W3-18-1]
 gi|120560520|gb|ABM26447.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
 gi|319424869|gb|ADV52943.1| two component transciptional regulator for
           thiosulfate/tetrathionate response, TtrR [Shewanella
           putrefaciens 200]
          Length = 200

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 57/208 (27%), Gaps = 36/208 (17%)

Query: 39  LDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  +    G                         LDS +      ++ + 
Sbjct: 10  VDDDDAILDSLGFMLRQFGYQVQTFNNGRDFLEQCPLSEAGCVILDSRMPEITGQEVQQK 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  +              +F      LP  ++        +         +   +     
Sbjct: 70  LIETHSP--------LGVIFLTGHGDLPMALSAFRKGACDFFQKPVSGKALVQAI----- 116

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                      +   LA +             K  +LT RE + L  + +G T+ +I+  
Sbjct: 117 --------EKAQCESLATF------EKQSLQHKFDQLTEREQQVLAHVIQGMTNKQISEA 162

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +S  T+  + A IM+K      +  +
Sbjct: 163 MFLSLRTIEVHRAKIMKKLEVNNMAELV 190


>gi|296141209|ref|YP_003648452.1| LuxR family transcriptional regulator [Tsukamurella paurometabola
           DSM 20162]
 gi|296029343|gb|ADG80113.1| two component transcriptional regulator, LuxR family [Tsukamurella
           paurometabola DSM 20162]
          Length = 206

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 18/222 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       +   +     ++   E    +  L        E    ++   D   
Sbjct: 3   DVLLADDEHLIRTAMAALLDLEDDLHVAAEAGSGTELLARWRRRIDEGLPPAVAVLDLQM 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  +  +   +   +      L               +     +   T   A +   +
Sbjct: 63  PGMDGIDTAA--ELLRLTPGAGTLIVTSHGRPGYLKRALSIGVRGFLPKTAPAATLAQVI 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   GR +  +   E                     D  LT RE + L + ++G + D
Sbjct: 121 RTVHDGGRYVDPELAAE----------------AISAGDSPLTPREADVLEFAADGASVD 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA    ++  T  NY++S + K     R  A   A     +
Sbjct: 165 EIARRAHLTPGTTRNYLSSAVAKLGVANRYEATLRARERGWI 206


>gi|90425279|ref|YP_533649.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90107293|gb|ABD89330.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 209

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 56/214 (26%), Gaps = 29/214 (13%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHF---------LLVRWDLFQEQKLDSIVSSDWPFD 85
            +  +D   +    +  +    G              + R        LD  +      D
Sbjct: 8   EIFVVDDDPAVRETLSIVLSAAGYQSICFADGEALLAVARSRCPACILLDVHIPGRSGLD 67

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +   +      +     +        +   +         +    F    I     
Sbjct: 68  ILEELHAEDYP--APIFMISGKG------DIAMAVNAIKNGALDFIEKPFRGPEI----- 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +      I          L     ++             LT RE E L   S G T+ E
Sbjct: 115 -VTRVEEAIEAFTRRRAAGLVPKVPSLNFPGREP------LTMREREVLELFSSGNTNKE 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               LGIS  T+  + A+IM+K   K  +  +  
Sbjct: 168 AGRQLGISPRTIEYHRANIMKKLGAKNATDLVRI 201


>gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 904

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 24/266 (9%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLL 63
           + Q+  + +   + R +  + L     LL +                AL E VG  H + 
Sbjct: 638 LTQLEYLGHVRRQARVAAGAKLERARILLMQGHTRAAKDELARADDPALWERVGRLHLIA 697

Query: 64  VRWDLFQEQKLDS-IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC-----------P 111
              D  +  +L    ++ D    + R  A +E   +    +R  +L             P
Sbjct: 698 NDLDYLELAQLRWEALAGDAQAAVARLRAAAEFADHDGRHRRAMKLRLLCALAYQRAGEP 757

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL-----------FPKGRIILRDRLW 160
                       A     +  L  D    RIG +L              +  ++    + 
Sbjct: 758 AAAQAILAPVLKAACAEGFARLLLDEGGNRIGPLLAQFSRTLESSGGAQRDPVLAEFVMR 817

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            +      + +              LT +E+  L  ++EG ++  IA  L +S +TV  +
Sbjct: 818 LVQACGPLEESPEPIAGDRPQLLDPLTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTH 877

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I  K    +R+ A+A A R  ++
Sbjct: 878 LRNINNKICAHSRTQAVAIARRLGVI 903


>gi|302559531|ref|ZP_07311873.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
 gi|302477149|gb|EFL40242.1| two-component system response regulator TcsR2 [Streptomyces
           griseoflavus Tu4000]
          Length = 202

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 62/225 (27%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D+    + L   +     M  + +   G+     V         LD  +   
Sbjct: 1   MQRIVLAEDMHMIRVALAALLDLEPDMEVVAQVGSGSEVLPAVLRTGADTAILDIDMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +                 L                     +         + 
Sbjct: 61  DGIAAAAVLRDRA--------PGCRTLILTGMARPGTLWRALDAQVAGFLPKDASPDELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +    R+I  +       +                 D  LT REVE L  ++EG 
Sbjct: 113 DGVRRVGAGRRVIDPELAMAAWEVG----------------DSPLTEREVEVLARVAEGA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA    +S  TV NY+ +I+ K   + R  A+  A  N  +
Sbjct: 157 DTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGWL 201


>gi|323344011|ref|ZP_08084237.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323094740|gb|EFZ37315.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 213

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                  +  IR  L       R I +     + +            +    +  +LT  
Sbjct: 101 VLLKESPLQEIREALSFAMRGRRFICQRMTELLLV-----------PETREQEQVKLTRT 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G T+ EIA     S +TVN +  +I RK        A  YA+R  +V
Sbjct: 150 ETEVLKDIALGMTTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEATKYALRAGLV 206


>gi|312796728|ref|YP_004029650.1| transcriptional regulatory protein fixJ [Burkholderia rhizoxinica
           HKI 454]
 gi|312168503|emb|CBW75506.1| Transcriptional regulatory protein fixJ [Burkholderia rhizoxinica
           HKI 454]
          Length = 207

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 73/239 (30%), Gaps = 40/239 (16%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
           F  QQ  + +  +DE     +  L   +            V          +    S   
Sbjct: 5   FTTQQETVFVVDDDEAVRDSLRWLLEANGY---------RVQCFSSAEQFLDAYQPSQL- 54

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +S     +L   +                 +F      +P  ++ 
Sbjct: 55  -------GCLILDVRMSGMNGLELQEKLIAEH--------ATLPIIFVTGHGDVPMAVST 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  +    FD A +R  +  +  +               A  +++  +       +
Sbjct: 100 MKKGAMDFIEKPFDEAELRQLVERMLER---------------ARTESSTAQQQRAAAER 144

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 145 LSKLTAREQQVLGRIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 203


>gi|332142663|ref|YP_004428401.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552685|gb|AEA99403.1| putative transcriptional regulator, LuxR family protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 225

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 12/204 (5%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
                   R  ++    G S                S++++ + F +      S      
Sbjct: 17  TRRDEAYERFLSILPSCGFS------VTSGAIHPPRSVLNNTYTFFIDAQYCDSVAMLNL 70

Query: 100 NVLQRPTELFCPVFHTLPENI----TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
            V+    +L   +F+    ++           N    +  ++  +  G+  +    +   
Sbjct: 71  PVVNDYPDLNKVIFNVPQADVDFHYAALQHGINGIFHIEDNLELLVRGVQQVQAGNKWYS 130

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R+ +     + A      K           LT RE+     I++G  + EIA  L IS N
Sbjct: 131 REIMSR--YIDANLVPKTKPVAALQSSTTVLTKRELAITRKIADGAQNQEIADCLHISVN 188

Query: 216 TVNNYIASIMRKTATKTRSGAIAY 239
           TV  ++ SI RKT  + R   I +
Sbjct: 189 TVKTHVYSIFRKTDCRNRVELIKW 212


>gi|299533896|ref|ZP_07047262.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|298718123|gb|EFI59114.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 199

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 14/176 (7%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      D ++ +    +       +    +   +                
Sbjct: 34  PDIVIVDYHMPDPQYGDGIKFIGYLLRQF-----EGLKVIVLTMLSNPMIVKALYEAGVK 88

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  D   +   + L+           L     L                +   LT 
Sbjct: 89  GVVFKQDDPTEVFKAIRLVSLGNTYTPPSFLETNVSLQHQMLQE---------RFKSLTP 139

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE E L +   G +  EIA  L  S  TV++   + MRK   K+    +A+ + + 
Sbjct: 140 REFEVLRYYVRGGSLAEIAERLNRSIKTVSSQKMTAMRKLEAKSNQELMAFCLNSG 195


>gi|45259328|emb|CAE51186.1| RemP protein [Streptomyces resistomycificus]
          Length = 221

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 70/217 (32%), Gaps = 19/217 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL--------FQEQKLDSIVSSDWPFDL 86
           R++ +D           L E  G S F +V             + ++   +V    P   
Sbjct: 5   RVLLVDSERLVAEGFQKLLE--GFSEFSVVSVAPDGLSALKEVRRERPHLVVMGLCPAGS 62

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                     +     Q    +               A   N Y S       +R  L+ 
Sbjct: 63  DSAQVARAIRRD---FQHVRIVVLATNQQPVYMREAFAAGANAYLSRNIGADELRDTLLT 119

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +  +G  +      ++  + +                  LT RE + L+ +++ + +  I
Sbjct: 120 VHREGAALSTVAAGQMLEMLS------GRPTNGGSPLSLLTERERQILSLVADEQATHRI 173

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           A  LGIS  TV NY++ I  K  T+ R     YA R+
Sbjct: 174 AKRLGISPKTVRNYLSRIYAKLGTQNRVQTALYAKRS 210


>gi|325067020|ref|ZP_08125693.1| NarL family two-component response regulator [Actinomyces oris K20]
          Length = 199

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 19/181 (10%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             +  E + D ++            A +   +     +         F            
Sbjct: 36  LPVALEHRPDVVLMDVDMPGTDGLSATASLLERLPATRVLIVTT---FGRPGFLRRAIQS 92

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +         +   +  +    R++      +  +                  D  
Sbjct: 93  GAHGFVVKDAPATELAESVRRVHAGLRVVDPALAADSLIFG----------------DSP 136

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L   ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +   
Sbjct: 137 LTARETEVLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGW 196

Query: 246 V 246
           +
Sbjct: 197 I 197


>gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 201

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 28/195 (14%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
           +T + G S   ++  +       D  +     F+L+  +                 +F  
Sbjct: 33  VTAHDGESGLAMLLREAPDLVLCDVGMPGMTGFELLEQLRTL-----APRYAEIPFVFLT 87

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
                   +       + Y +   D   +   +     +                     
Sbjct: 88  AMAQRDSELRGRRLGADDYVTKPVDFEILISIVQTRLAR--------------------- 126

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +          +L+ RE E L W + GKTS EIA ILG+S+ TV+ ++ +   K    
Sbjct: 127 --RPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVA 184

Query: 232 TRSGAIAYAVRNNIV 246
           TR  A+  A    I+
Sbjct: 185 TRIEAVVRASSAGII 199


>gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 92

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D     D  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ N 
Sbjct: 61  RVALLNWAMDNG 72


>gi|37681305|ref|NP_935914.1| LuxR family transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200056|dbj|BAC95885.1| transcriptional regulator, LuxR family [Vibrio vulnificus YJ016]
          Length = 215

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 24/216 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R+ L   +       +         + + A   LL+R +      LD  +     
Sbjct: 16  DHPLFRNALFQSVHMAVSGANLLE-----ADSLDALLNLLMREEEPDLLLLDLKMPGANG 70

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +          ++                     +     +   + D+  +   
Sbjct: 71  MSGLIHLRAE--YPDLPIV------VVSASEEPAVVTQVKSHGAFGFIPKSSDMRTLVSA 122

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +           +               + +    K   LT ++ + L  +S+G  +
Sbjct: 123 LNQVLNGDPYFPEGLITN-----------NAACNDLAEKIAALTPQQYKVLGMLSDGLLN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 172 KQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 207


>gi|115523744|ref|YP_780655.1| response regulator FixJ [Rhodopseudomonas palustris BisA53]
 gi|115517691|gb|ABJ05675.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisA53]
          Length = 205

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 40/238 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + ++ +  +D+     +  L   +D   R+   +  + +   M  L              
Sbjct: 4   RGSVYVIDDDQAMRDSLEFLLGSADFEVRL--FESAIDFLHDMSGL-------------- 47

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F     D  +      DL++ +             R   +       +P  +      
Sbjct: 48  -PFGCVVSDVRMPGMNGMDLLKQLKNDR--------ARLPVVIMTGHGDVPLAVEAMKLG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +    F+  R+   +                   + A+              +   L
Sbjct: 99  AIDFIEKPFEDDRLIDMIETA---------------LMQASAGVKTEAIAQDIAARIATL 143

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE + +  +  G ++  IA    IS  T+  Y A++M K    + S  +  A+R  
Sbjct: 144 SPRERQVMDGLVAGLSNKVIAREFDISPRTIEVYRANVMTKMQAGSLSELVRLAMRGG 201


>gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
 gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC
           8106]
          Length = 100

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE++ +  I+ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R   +
Sbjct: 4   SKSHTPVSLSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRVALV 63

Query: 238 AYAVRNN 244
           ++A+++ 
Sbjct: 64  SWALKSG 70


>gi|303240539|ref|ZP_07327055.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302591941|gb|EFL61673.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 210

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 26/225 (11%)

Query: 33  LARMIPLDCTVSWTMRMY-----------ALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
           + R++  +        +                  G     L   +      +D  +   
Sbjct: 1   MIRILIAEDMQMLRESLKFMIESDGEMQVVALAQNGKEALSLCEKESPDVVVMDLKMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
             F+  + +     +           +    F+             + + +    +A + 
Sbjct: 61  DGFEATKFIKSRYPN--------TKVIALSTFNDEASVSKAVKSGVDGFITKDLGLAELH 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +      +       +      + +           +F LT RE+E +  IS+GK
Sbjct: 113 QSIKSI-----YLGLRVFQNLSRTGGAKKSY--CSAEREALEFNLTDREIEIIKHISDGK 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  EI  ++ +S  TV N +  ++ +     R     +AV+NNI+
Sbjct: 166 SYKEIGEVIHLSEGTVRNMVYELLGRFNLNDRIQLAVFAVKNNII 210


>gi|298249219|ref|ZP_06973023.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297547223|gb|EFH81090.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1032

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 9/203 (4%)

Query: 48   RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
             +  +    G  H         Q      +  +       R + +               
Sbjct: 832  TLARVLIARGCGHPNASSLSQAQILLDRLLEIAVGTDAHGRRIEIQMLRALA-----LHT 886

Query: 108  LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-GLLA 166
                         T        Y  L  D   +   L+           D L  I   +A
Sbjct: 887  QGKTRQALTTLGPTLAQAEPEGYLRLFADEGEVMAHLLTRIAPFTTASPDYLQRIQAAIA 946

Query: 167  AYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                           +      L+ RE   L  ++EG ++ +IA  L +S +TV  ++  
Sbjct: 947  PAWHTQPDPSTQAGPRSTPYEPLSARERSVLQLMAEGYSNQQIAEHLILSLHTVKLHVKH 1006

Query: 224  IMRKTATKTRSGAIAYAVRNNIV 246
            ++ K     R+ A+A A   +I+
Sbjct: 1007 LLAKLGATNRTQAVARARALHIL 1029


>gi|261405324|ref|YP_003241565.1| LuxR family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|315645684|ref|ZP_07898808.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
 gi|261281787|gb|ACX63758.1| transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10]
 gi|315279162|gb|EFU42472.1| transcriptional regulator, LuxR family protein [Paenibacillus
           vortex V453]
          Length = 74

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A
Sbjct: 3   GTDHNSKFLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   ++  
Sbjct: 63  VVELIKLG 70


>gi|120403536|ref|YP_953365.1| two component LuxR family transcriptional regulator [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956354|gb|ABM13359.1| two component transcriptional regulator, LuxR family [Mycobacterium
           vanbaalenii PYR-1]
          Length = 216

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 66/232 (28%), Gaps = 30/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + L  + E     +  L +    L  +           R+ AL               
Sbjct: 2   VKVFLVDDHEVVRRGLIDLLSSDPELDVVGEAGSVAEALARIPAL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      +L R +     D           L    F +    +       
Sbjct: 47  QPDVAVLDVRLPDGNGIELCRDLLSRLPDLRC--------LMLTSFTSDEAMLDAILAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         +   +  +     ++           AA      +           LT
Sbjct: 99  SGYVVKDIKGMELAQAIKDVGSGRSLLD-------NRAAAALMARLRGEGERTDPLSGLT 151

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A  +
Sbjct: 152 EQERVLLGLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVF 203


>gi|213691932|ref|YP_002322518.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|296454256|ref|YP_003661399.1| LuxR family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|213523393|gb|ACJ52140.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|296183687|gb|ADH00569.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 227

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 17/238 (7%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  + +      S +  +   L   +           + AL          L    
Sbjct: 2   INVMIVDDQQPTRMGFSLMVMKDPALRMTLQAGNGQDALDILAAL---------QLHGQS 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      D    +        Y  ++         +          +   
Sbjct: 53  LPDVILMDVRMPVMDGLDATARIKQL-----YPSIRIL---ILTTYDQDSYAFGGLSAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  ++    I+      E+        ++         K   L 
Sbjct: 105 SGFLLKDVKTKDLCRAIHSVYDGDAILTPRITKEVIRRGVPNVSINADTLAIRSKFDSLG 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +SEG T+ EIA  LG+    V   ++  + K   K R G      +  +
Sbjct: 165 PREFEVSALVSEGMTNAEIAQRLGMQLEAVKKAVSRSLAKLDVKERVGIAVLWYKAGM 222


>gi|57233739|ref|YP_182229.1| LuxR family DNA-binding response regulator [Dehalococcoides
           ethenogenes 195]
 gi|57224187|gb|AAW39244.1| DNA-binding response regulator, LuxR family [Dehalococcoides
           ethenogenes 195]
          Length = 219

 Score = 90.7 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 61/228 (26%), Gaps = 25/228 (10%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E + +             L  +I  +  +        L+  +      ++R         
Sbjct: 3   ESKIKVLICDDHDIVCQGLVNIISCEADLEIVGCAANLSSAL-----TMIRELKPDVVLA 57

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +  +  FDL++    +        +          F                  S  
Sbjct: 58  DIRLGDENGFDLIKQSHRAGFKI--PFI------MITGFKNEFYVSKAIENGAAGLLSKE 109

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL-----TGR 189
                I   + L F    +   + L           N           D  L     T R
Sbjct: 110 SPGRVIVNSIRLTFDGNSVWPMELLKN-------TYNSLSISHYASDTDTNLAVPNFTPR 162

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E E + ++ +G T+  IA  LG+S  TV   + +IM K     R    
Sbjct: 163 EKEIIKFLLKGNTNKAIAHELGLSDVTVKKSLKNIMTKLHVDNRMKLA 210


>gi|327194559|gb|EGE61413.1| putative transcriptional regulator protein, LuxR family [Rhizobium
           etli CNPAF512]
          Length = 260

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 11/131 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV- 178
                 + +    L   +      + LL   G       L  +    A            
Sbjct: 112 RLVEGRIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPSALLNRLANKNAQLEPSLYQTKSV 171

Query: 179 ----------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT REV+ L  I +G  +  IA  L +S NTV  ++ +I +K 
Sbjct: 172 DVARNNALKLRRDSISALTTREVQILDLICKGTQNKIIADKLHLSENTVKVHVRNIYKKM 231

Query: 229 ATKTRSGAIAY 239
             + R+ A + 
Sbjct: 232 NVRNRTEAASR 242


>gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus
           KT]
          Length = 257

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 17/124 (13%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---- 186
                      + ++L               +  L  Y  +  +  +    +   L    
Sbjct: 133 AIKDHRGRHDCLYVLL--SSNLSFPPASRPMLEALLPYIDSALRQIEHLPEQQPTLIKAE 190

Query: 187 -----------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                      +GRE+E + W+++GKT+ EI +IL IS  TV N++  I +K     R+ 
Sbjct: 191 PEPKDESLNILSGRELEIMDWVTKGKTNQEIGMILDISAFTVKNHLQRIFKKLNVMNRAQ 250

Query: 236 AIAY 239
           A+A 
Sbjct: 251 AVAK 254


>gi|324998248|ref|ZP_08119360.1| response regulator receiver protein [Pseudonocardia sp. P1]
          Length = 229

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 47/189 (24%), Gaps = 9/189 (4%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    L          +D  +                +      +          F   
Sbjct: 46  GAEAIELAERHAPDVVLMDIRMPGTDGLTATE---TLRRRPRSPQVV-----VLTTFDAD 97

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         +         + + +        ++  +    +    A         
Sbjct: 98  AHVLRALRAGAAGFLLKDTPPDELVLAIRHAAAGRPVLSPEVTRRLIDRVAGGGEDSAR- 156

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           DV   +   L  RE      +  G+++ EIA +  +S  TV  ++++I+ K     R   
Sbjct: 157 DVARRRLAVLAERERAVAVELGAGRSNAEIAALHHVSIATVKTHVSAILTKLDLNNRVQV 216

Query: 237 IAYAVRNNI 245
                   +
Sbjct: 217 ALLVHDAGL 225


>gi|126462017|ref|YP_001043131.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103681|gb|ABN76359.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 235

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 66/224 (29%), Gaps = 17/224 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   D LA  +     +       +L     A+  +L    L     LD  +   
Sbjct: 26  IVDDHPLMCDALAMTLTHALGLKRVRSAASLA----AAEKILREGPLPDAIVLDLNLPDV 81

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + V  +            +                    A     Y S +    ++ 
Sbjct: 82  RGIEGVMSLQKLA--------RSVPLTVISAEVDAEMVTAVMAAGAQGYVSKSLPRPQMV 133

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                ++    +   +   +         +  +           LT +++  L  I +G+
Sbjct: 134 EAFARMWTGEFVTPEEYDAD-----GAGEDGGEQMRELARSFATLTPQQMNILRLICQGR 188

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  I+  L I+  TV  +IA+IM K   + R+ A   A +  I
Sbjct: 189 PNKLISYELSIAEATVKTHIAAIMTKINVRNRTQAALLASKARI 232


>gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM
           22836]
          Length = 245

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 32/67 (47%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K  +LT RE+  L  I EG  S EI+  L IS +TVN +   I+ K        A+ Y
Sbjct: 178 SSKASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQRILEKLDVNNSMEAVKY 237

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 238 ASALGLI 244


>gi|326771790|ref|ZP_08231075.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
 gi|326637923|gb|EGE38824.1| two-component system response regulator TcsR2 [Actinomyces viscosus
           C505]
          Length = 203

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   ++    +  + +   G     +          +D  +     
Sbjct: 3   RVMLADDQAMVRGALAALLALEADIEVVAQVGNGDDVVPVALEHRPDVVLMDVDMPGTDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                 +           L     L    F              + +         +   
Sbjct: 63  LSATASLLER--------LPATRVLIVTTFGRPGFLRRAIQSGAHGFVVKDAPATELAES 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++      +  +                  D  LT RE E L   ++G T 
Sbjct: 115 VRRVHAGLRVVDPALAADSLVFG----------------DSPLTARETEVLQAAADGATV 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+A  + +S  T  N+++  M KT   TR+ A+  A +   +
Sbjct: 159 SEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGWI 201


>gi|293397213|ref|ZP_06641487.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
 gi|291420684|gb|EFE93939.1| LuxR family two component transcriptional regulator [Serratia
           odorifera DSM 4582]
          Length = 201

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 38/230 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +++L  +       +      S     +  +         + A               + 
Sbjct: 3   SLLLVDDHPVVHVALEAALMTSPHAYALHAVHNDTQALSELAA---------------NR 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F    LD  +       L++ +      +          L               +   N
Sbjct: 48  FDLVILDIGLPQVDGLQLLKKIRRHYPQQ--------AMLIYTAQEEEVYARMAYSAGAN 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +      + ++   +  +         D                 + +       +LT 
Sbjct: 100 GFVHKGKPLEQLVQAIDAVLGGASGFPAD---------------LPTDETAATDSPQLTP 144

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +E++ L  +S+G ++ +IA +L IS  TV+ +  +I+RKT        +A
Sbjct: 145 KELQVLGLLSKGLSNLQIAAMLNISNKTVSTHKKNILRKTGASNLLELVA 194


>gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 230

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 73/216 (33%), Gaps = 10/216 (4%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +  L   ++    M  L    G S    +         LD+++     F+
Sbjct: 13  VLIVDDTPDNLAMLSDALNDAGYM-VLVALDGLSALNRIERRRPDLILLDAMMPGLDGFE 71

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +     +    VL      F          +       + Y +         +  +
Sbjct: 72  TCRRIKEHPANADIPVL------FMTALTESRHVVQGFEVGGSDYVTKPIQTDE-VLARV 124

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +   IL          A    +            F+LTGREVE L W++ GKT+ +
Sbjct: 125 AAHLRTSRILLSARAASQPAAPSLDDEPAH--RVLSARFQLTGREVEVLRWVACGKTNRD 182

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           I  IL +S  TVN ++  +  K   +TR+ A + A+
Sbjct: 183 IGTILDLSPRTVNKHLEHVYVKLGVETRTAATSVAL 218


>gi|291438340|ref|ZP_06577730.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341235|gb|EFE68191.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 202

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 61/225 (27%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D+    + L   +     M    +   G+     V         LD  +   
Sbjct: 1   MQRIVLAEDMHMIRVALAALLDLEPDMEVAAQVGSGSEVLPAVLRTGADTAILDIDMPGM 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +                 L                     +         + 
Sbjct: 61  DGIAAAAVLRDRA--------PGCRTLILTGMARPGTLRRALDAQVAGFLPKDASPEELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +    R+I  +       +                 D  LT REVE L  ++EG 
Sbjct: 113 GGVRRVGAGRRVIDPELAMAAWEIG----------------DSPLTEREVEVLARVAEGA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +IA    +S  TV NY+ +I+ K   + R  A+  A  N  +
Sbjct: 157 DTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGWL 201


>gi|262403969|ref|ZP_06080524.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262349001|gb|EEY98139.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 222

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               Y + +    ++      +      +  D L E        +   K  D        
Sbjct: 98  GAVGYVAKSCARQQMGEAFAQILRGDVYLPADILRENVKNPPSSSLR-KQADFSVEALQT 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT ++++ L  +S+G  + +IA  L IS  TV +++++I++K     R  A+  A
Sbjct: 157 LTRKQLQVLQSMSKGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVVGA 211


>gi|302530222|ref|ZP_07282564.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302439117|gb|EFL10933.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 200

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 76/239 (31%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +VL  ++      ++ L    D +  +   +                G          
Sbjct: 2   TTVVLADDEVLLRKAMAALLPMEDEITVLAEAED---------------GEEAVRATVEH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  + +    D V  +     ++   V+   T    P                
Sbjct: 47  RPDVLVIDLEMPTVDGLDAVARIRRERPEQ---VILMLTRHARPGV-----LRKALKLGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S + + A I   +  L    R I  D      +                  D  LT
Sbjct: 99  QGFVSKSAEPAHIAAVIRTLDEGKRWIDPDVSALAVV-----------------DDCPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++ L    EG +  +IA  L ++  TV NY+++ M+KT T+TR  A  YA  ++ +
Sbjct: 142 VREIDVLRATREGYSVADIATRLHLAAGTVRNYLSNAMQKTQTRTRHEAARYAREHDWL 200


>gi|170741132|ref|YP_001769787.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168195406|gb|ACA17353.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 251

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 64/216 (29%), Gaps = 16/216 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG--ASHFLLVRWDLFQEQKLDSIVSSDW 82
           HL    D       L   V       A+ E  G  A+   L R        LD  +    
Sbjct: 33  HLMIVDDHPLFREALTSAVRLAFPAAAVEEADGIEAACAALSRLRSVDLTLLDLSMRGVN 92

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            FD +  +           +                     +     +       A +  
Sbjct: 93  GFDGLLAIRTRF-----PRIPILVVSGM---DDPRIVREALSHGAAGFVPKAAGKAVLTR 144

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      +        G+ A               +  ELT ++V  L  I +GK 
Sbjct: 145 AITDVLNGAIFVPD------GVGAQEGEAPRGGKPPIAQRIAELTPQQVRVLLMIRQGKL 198

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + +IA  LG+  +TV  +++ I+RK    +R+  + 
Sbjct: 199 NKQIAHELGVGDSTVKAHVSEILRKLGVISRTQIVI 234


>gi|254472083|ref|ZP_05085484.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959285|gb|EEA94484.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 202

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 56/217 (25%), Gaps = 35/217 (16%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSDW 82
           + + +  +D   +    +  L E  G         +               LD  +    
Sbjct: 3   MPSVIHIVDDDPAVRDALSLLFETEGFRVKSFANAEEFLGGVEEETPNCVLLDVHMPGRS 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             D+++ +          +     +   P        +         +    FDV  I  
Sbjct: 63  GIDILKSLNGENFP--APIFIISGQGDIP------MAVEAIKSGAYDFIEKPFDVESIIS 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +     +                                   LT RE + LT I+ G +
Sbjct: 115 RVREAVSRTAQASGANTMTF------------------PGAETLTPRERQVLTEITAGSS 156

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + E    L IS  TV  + A IM K   +  +  +  
Sbjct: 157 NKEAGRNLKISPRTVEVHRARIMEKLGARNAADLVRI 193


>gi|253991535|ref|YP_003042891.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638413|emb|CAR67035.1| transcriptional regulator of sqaz gene cluster [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782985|emb|CAQ86150.1| putative transcriptional regulator [Photorhabdus asymbiotica]
          Length = 236

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 13/216 (6%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            ++L+ +           ++     Y+    + + + + +       ++ ++   + +  
Sbjct: 6   HEILSEIQKAKTIPELEKKVLNAINYLDFEFYSIYQEEKYPFTTKKYVLITNLHTETMGN 65

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHT-------LPENITPPAGMDNRYCSLTFDVARIRI 142
              ++      ++        P  +              P         S+         
Sbjct: 66  YDKNDNHDSDQLMNGDFIFSIPSIYDEKTSKHTDFMIEKPNENEIKNIISIKIKSYHGER 125

Query: 143 GLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVECLTW 196
            +  +  K   I   + L + G+L        K+++    K+       L+ REVE + W
Sbjct: 126 SIFSVARKEGPISHNEILNKAGMLGILANECIKTFNNLKNKEDKIIVPTLSTREVEVIRW 185

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             EGKTS EIA IL IS  TVN +I +IM K     
Sbjct: 186 TCEGKTSAEIANILDISTRTVNFHINNIMEKLVVPN 221


>gi|240141039|ref|YP_002965519.1| two-component response regulator [Methylobacterium extorquens AM1]
 gi|240011016|gb|ACS42242.1| two-component response regulator [Methylobacterium extorquens AM1]
          Length = 244

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           L      R   V   P   + LA  I L    +         + +G +  +L R      
Sbjct: 22  LAGGQALRLLIVDDHPLFREALASAIALAFPEAVLHE----ADGIGTACEILGRNPAIDL 77

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +     F+ +  +           +             + E +         + 
Sbjct: 78  TLLDLSMQGVTGFEGLTAIRTRF-----PRVPILIVSGVTDPRIMHEAV---RHGAAGFV 129

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D A +   +  +      +  D       +                +   LT +++
Sbjct: 130 PKAVDKATLTRAISEVLGGALFMPPDLAAAPAPV------RGGDKAPIAERVARLTPQQM 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             L  I +GK + +IA  L +  +TV  +++ I+RK    +R+  + 
Sbjct: 184 RVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVI 230


>gi|218442646|ref|YP_002380966.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218175004|gb|ACK73736.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 222

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 46/178 (25%), Gaps = 5/178 (2%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
              D ++           +           L     L           +   +   + Y 
Sbjct: 46  TNPDLVIIDMSLKQGESGVTA--LSSISRSLPHLKSLVLTASSQFELALKCLSVGADGYL 103

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---TG 188
                   IR  +  ++  G  +      +      +  +              L   + 
Sbjct: 104 IKGQQPENIRAVIKTVYEGGIYLDPSFKTDFNHYFTFPNSHLIHSATSSESKEILQKFSA 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E+E    I  G T+ +IA I     +T+ + I  I  K   K R+     A    ++
Sbjct: 164 AELEVFQLIGNGYTNKQIATITHKPIDTIKSIIVRIFHKLNLKNRTLVALKAYELGLI 221


>gi|163853617|ref|YP_001641660.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218532476|ref|YP_002423292.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|254563553|ref|YP_003070648.1| two-component response regulator [Methylobacterium extorquens DM4]
 gi|163665222|gb|ABY32589.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524779|gb|ACK85364.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
 gi|254270831|emb|CAX26836.1| two-component response regulator [Methylobacterium extorquens DM4]
          Length = 244

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           L      R   V   P   + LA  I L    +         + +G +  +L R      
Sbjct: 22  LAGGQALRLLIVDDHPLFREALASAIALAFPEAVLHE----ADGIGTACEILGRNPAIDL 77

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +     F+ +  +           +             + E +         + 
Sbjct: 78  TLLDLSMQGVTGFEGLTAIRTRF-----PRVPILIVSGVTDPRIMHEAV---RHGAAGFV 129

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               D A +   +  +                L AA              +   LT +++
Sbjct: 130 PKAVDKATLTRAISEVLGG------ALFMPPDLAAAPAPARGGDKAPIAERVARLTPQQM 183

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             L  I +GK + +IA  L +  +TV  +++ I+RK    +R+  + 
Sbjct: 184 RVLGMIRQGKLNKQIAYELQVGDSTVKAHVSEILRKLEVISRTQIVI 230


>gi|54301688|ref|YP_131681.1| tetrathionate reductase complex response regulator [Photobacterium
           profundum SS9]
 gi|46915108|emb|CAG21881.1| hypothetical tetrathionate reductasecomplex: response regulator
           [Photobacterium profundum SS9]
          Length = 197

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 44/235 (18%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + + +  +DE     ++ +    D       ++                G +     
Sbjct: 1   MNPLPVFVVDDDESVRDSLAFMLEGYDF-----KVESYAD------------GVTFLEQA 43

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D      LD  +       + R +                 +F      +P  +    
Sbjct: 44  NIDQAGCVVLDIRMPIMMGQQVHRLLKDKHSP--------LVVIFLTGHGDVPMAVEALK 95

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +     D  ++   +           +    +   L                   
Sbjct: 96  HGAIDFFQKPVDGEKLVAAIRHAEK------QSLHNQSQQLLHKAFE------------- 136

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT RE E L  + +G  + +I+  L I+  TV  + +S+M+K   KT +  + +
Sbjct: 137 TLTTREQELLGLLVKGYKNQQISDELCIAVRTVEVHRSSLMKKLHAKTIAELVMF 191


>gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
 gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory
           response ZniR [Cupriavidus metallidurans CH34]
          Length = 206

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 27/223 (12%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H     +  A    L               + G   F  +          D  +     
Sbjct: 9   PHQILCIEDDAETATLIAEELTERGFAVTVAHDGQEGFAAILRMPPDLVLCDVGMPVMDG 68

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F+++  +                 +F          +       + Y +   D   +   
Sbjct: 69  FEVLAKLRAL-----APRYAEVPFVFLTALAQRDAELKGRRLGADDYVAKPVDFDILESI 123

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +                        + +          ++  L+ RE+E L+W + GKTS
Sbjct: 124 I----------------------EARLSRAVKPQQRTPQNVTLSEREIEALSWSARGKTS 161

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA ILG+S+ TV+ +I     K    TR  A+  A     +
Sbjct: 162 GEIATILGLSKRTVDFHIDRAREKLGVATRVEAVVRAATEGFI 204


>gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101]
          Length = 236

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 12/222 (5%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L  R  L+           +   +    +  GA+       D  +  + D ++ +D    
Sbjct: 20  LLERHRLVVCFGSPMTLTLFVSALGPAQQLAGATTSESDALDRLRSTQADLLLCTDRLEQ 79

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI-GL 144
                 +    +          +  P    L           +  C  +          L
Sbjct: 80  GNGGSLVEAAKQLQPAPSTLLVVTQP--RRLITIRRAVDAGCDGICLESQIGQGTVAQAL 137

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +      I      E GL   Y         +       LT RE+E L  I+   T+ 
Sbjct: 138 ETISAGAAYI------EKGLQQQYLQGF---CGIGDAPLAPLTERELEVLQRIAANATNP 188

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV +++A ++ K   ++R  A    +R  +V
Sbjct: 189 EIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIKGIRLGLV 230


>gi|300855110|ref|YP_003780094.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528]
 gi|300435225|gb|ADK14992.1| predicted regulatory protein [Clostridium ljungdahlii DSM 13528]
          Length = 885

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE E L  I +G  + EIA  L I+ +T  ++I +I  K + + R  A+A A    I+
Sbjct: 826 SKREREVLMLIEKGAKNSEIAKRLFITESTAKSHILNIFSKLSVRNRIEAVAKAKEIGII 885


>gi|257143112|ref|ZP_05591374.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
          Length = 296

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 50  PRFAPRLGIAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 109

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 110 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLARDHAARGSDALDGFLRVMHDD 168

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 169 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLALGLSVHRFAAPQLIASA 228

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 229 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 288

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 289 FASSRGLI 296


>gi|218506954|ref|ZP_03504832.1| transcriptional activator protein [Rhizobium etli Brasil 5]
          Length = 179

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 17/179 (9%)

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-----------PENITPPAGMDNRYCSL 133
           + V      +      V++     F PV  +             +               
Sbjct: 1   EWVEQYRDRDYFSIDPVVRLGRRGFLPVEWSASGWDSGRAYGFFKEAMAFGVGRQGVTLP 60

Query: 134 TFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF--KSYDVHWGKDFELT 187
                  R    +         R    D + ++  LA +  +     S          L+
Sbjct: 61  VRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPRLS 120

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++CL   + G  + +I   L IS + V  Y+AS  RK    T S A+A A    ++
Sbjct: 121 RRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI 179


>gi|94497083|ref|ZP_01303656.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
 gi|307296677|ref|ZP_07576496.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|94423455|gb|EAT08483.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
 gi|306877806|gb|EFN09031.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 207

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 58/220 (26%), Gaps = 32/220 (14%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR---------WDLFQEQKLDSIVSSDWPFD 85
            +  +D   S         +  G                         LD  +      +
Sbjct: 6   VIHLVDDEESIRKAASFALKTAGYDVVTYASGVEFLKEAKSAAVGCVILDVRMPEMDGLE 65

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   MA    +           +       +   +    G    +    F+ A +   + 
Sbjct: 66  VQAAMAARGVNM--------PVIVLTGHGDVSVAVQAMKGGAVDFLEKPFEKAALLGAVS 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             F +   +    L                      +   LT RE E L  ++ G  +  
Sbjct: 118 RAFARLDDVDFRTL---------------ETSEAGVRVAALTPREREVLEGLANGLPNKT 162

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  LG S  TV  + AS+M K   +  S A+  A    +
Sbjct: 163 IAYDLGCSSRTVEVHRASLMAKLEVRNLSEALRIAFAAGM 202


>gi|21223147|ref|NP_628926.1| two-component regulator [Streptomyces coelicolor A3(2)]
 gi|29831541|ref|NP_826175.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|182436552|ref|YP_001824271.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239929430|ref|ZP_04686383.1| putative two-component system response regulator [Streptomyces
           ghanaensis ATCC 14672]
 gi|239979981|ref|ZP_04702505.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|239990114|ref|ZP_04710778.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|254383110|ref|ZP_04998464.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|254392007|ref|ZP_05007198.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|256785756|ref|ZP_05524187.1| putative two-component system response regulator [Streptomyces
           lividans TK24]
 gi|282860879|ref|ZP_06269945.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|289769648|ref|ZP_06529026.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|290958081|ref|YP_003489263.1| luxR family regulator [Streptomyces scabiei 87.22]
 gi|291437756|ref|ZP_06577146.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291447128|ref|ZP_06586518.1| whiK [Streptomyces roseosporus NRRL 15998]
 gi|291451838|ref|ZP_06591228.1| whiK [Streptomyces albus J1074]
 gi|294630967|ref|ZP_06709527.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|294814529|ref|ZP_06773172.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|295838473|ref|ZP_06825406.1| two-component system, regulatory protein [Streptomyces sp. SPB74]
 gi|297192634|ref|ZP_06910032.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297201810|ref|ZP_06919207.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|302519583|ref|ZP_07271925.1| whiK [Streptomyces sp. SPB78]
 gi|302536316|ref|ZP_07288658.1| whiK [Streptomyces sp. C]
 gi|302543269|ref|ZP_07295611.1| two-component system, regulatory protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302553613|ref|ZP_07305955.1| two-component system, regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302558923|ref|ZP_07311265.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|307331078|ref|ZP_07610207.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|318058051|ref|ZP_07976774.1| luxR family regulator [Streptomyces sp. SA3_actG]
 gi|318080229|ref|ZP_07987561.1| luxR family regulator [Streptomyces sp. SA3_actF]
 gi|326442919|ref|ZP_08217653.1| luxR family regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326777175|ref|ZP_08236440.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|329938172|ref|ZP_08287623.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|333026588|ref|ZP_08454652.1| putative two-component regulator [Streptomyces sp. Tu6071]
 gi|3449280|emb|CAA20424.1| putative two-component regulator [Streptomyces coelicolor A3(2)]
 gi|3618247|emb|CAA09263.1| whiK [Streptomyces coelicolor A3(2)]
 gi|29608657|dbj|BAC72710.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|178465068|dbj|BAG19588.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|194342009|gb|EDX22975.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|197695725|gb|EDY42658.1| two-component system, regulatory protein [Streptomyces sp. SPB74]
 gi|197705685|gb|EDY51497.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197717529|gb|EDY61563.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|197722965|gb|EDY66873.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|260647607|emb|CBG70712.1| putative luxR family regulator [Streptomyces scabiei 87.22]
 gi|282564615|gb|EFB70151.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|289699847|gb|EFD67276.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|291340651|gb|EFE67607.1| two-component regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291350075|gb|EFE76979.1| whiK [Streptomyces roseosporus NRRL 15998]
 gi|291354787|gb|EFE81689.1| whiK [Streptomyces albus J1074]
 gi|292834300|gb|EFF92649.1| two-component system, regulatory protein [Streptomyces sp. e14]
 gi|294327128|gb|EFG08771.1| Two component transcriptional regulator, LuxR family [Streptomyces
           clavuligerus ATCC 27064]
 gi|297159676|gb|ADI09388.1| putative luxR family regulator [Streptomyces bingchenggensis BCW-1]
 gi|302428478|gb|EFL00294.1| whiK [Streptomyces sp. SPB78]
 gi|302445211|gb|EFL17027.1| whiK [Streptomyces sp. C]
 gi|302460887|gb|EFL23980.1| two-component system, regulatory protein [Streptomyces
           himastatinicus ATCC 53653]
 gi|302471231|gb|EFL34324.1| two-component system, regulatory protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302476541|gb|EFL39634.1| two-component system, regulatory protein [Streptomyces griseoflavus
           Tu4000]
 gi|306883289|gb|EFN14346.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|320009036|gb|ADW03886.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
 gi|326657508|gb|EGE42354.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|328884500|emb|CCA57739.1| DNA-binding response regulator, LuxR family [Streptomyces
           venezuelae ATCC 10712]
 gi|329302661|gb|EGG46551.1| DNA-binding response regulator, LuxR family [Streptomyces
           griseoaurantiacus M045]
 gi|332746440|gb|EGJ76881.1| putative two-component regulator [Streptomyces sp. Tu6071]
          Length = 203

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 26/226 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   V+    +  +T    G         D      +D  +   
Sbjct: 1   MTSVLVCDDSPLAREALRRAVATVPGVERVTTAANGEEVLRRWGADRSDLILMDVRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + VR +  ++             +   V   L       A     Y       A +R
Sbjct: 61  GGVETVRRLLSAD--------PGARIIMLTVAEDLDGVALAVAAGARGYLHKDASRAELR 112

Query: 142 IGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             +          +   RL    + AA                  LT RE++ L  +S G
Sbjct: 113 ATVTQALADPTWRLAPRRLRSAEMGAA----------------PTLTAREIQVLEGMSHG 156

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++ EI   L +S +TV  +   + +K     R+ A+A   R  +V
Sbjct: 157 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202


>gi|3868876|dbj|BAA34262.1| response regulator [Rhodococcus erythropolis]
          Length = 209

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 22/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            +           + R++           +       G +    +     +   LD  ++
Sbjct: 4   VAVCDDHGLIRSGIRRILAATPEFEVVAAV-----ATGNALMRALPGLQPEVLVLDIRLA 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L+  +A         V      +   +                 Y +       
Sbjct: 59  DGSGLELLETIAE--------VAPATRVVILSMHGARGYVQKARFLGARGYVTKECLDEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +      +           A       +  D        L+ RE+E +  ++ 
Sbjct: 111 LVAVLREVMAGDDFVSLRAA------APGVGVRERRKDTDIDA---LSARELEVMRMVAA 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ E+A  L +S  TV ++ ASI RK   +TR+     A+   ++
Sbjct: 162 GLTTSEVAERLTVSPRTVESHRASIQRKLHVRTRAEMARIALDEGLL 208


>gi|1916865|gb|AAB52544.1| response regulator BpdT [Rhodococcus sp. M5]
          Length = 209

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 65/227 (28%), Gaps = 22/227 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                        + R++           +       G +    +     +   LD  ++
Sbjct: 4   VEVCDDHGLIRSGIRRILAATPEFEVVAAV-----ATGNALMRALPGLQPEVLVLDIRLA 58

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +L+  +A         V      +   +                 Y +       
Sbjct: 59  DGSGLELLETIAE--------VAPATRVVILSMHGARGYVQKARFLGARGYVTKECLDEE 110

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  +      +           A       +  D        L+ RE+E +  ++ 
Sbjct: 111 LVAVLREVMAGDDFVSLRAA------APGVGVRERRKDTDIDA---LSARELEVMRMVAA 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ E+A  L +S  TV ++ ASI RK   +TR+     A+   ++
Sbjct: 162 GLTTSEVAERLTVSPRTVESHRASIQRKLHVRTRAEMARIALDEGLL 208


>gi|58580732|ref|YP_199748.1| LuxR/UhpA family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84622663|ref|YP_450035.1| LuxR/UhpA family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713355|ref|ZP_02244562.1| transcriptional regulator luxR/uhpA family protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
 gi|58425326|gb|AAW74363.1| transcriptional regulator luxR/uhpA family [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84366603|dbj|BAE67761.1| transcriptional regulator luxR/uhpA family [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 212

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 1   MADLTILVADDHPLFRAAVLHVLQQTLPQANVVEASSAATLSAMLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSTPAESIGTAVASVLDGGTWFPP-----------MTAERSEADAQLASKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 202


>gi|53719913|ref|YP_108899.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53724159|ref|YP_103343.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           ATCC 23344]
 gi|76811469|ref|YP_334134.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1710b]
 gi|121601447|ref|YP_993544.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           SAVP1]
 gi|124386548|ref|YP_001029028.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10229]
 gi|126438707|ref|YP_001059640.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 668]
 gi|126448807|ref|YP_001081052.1| LuxR family DNA-binding response regulator [Burkholderia mallei
           NCTC 10247]
 gi|126452394|ref|YP_001066923.1| LuxR family DNA-binding response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134277393|ref|ZP_01764108.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|167000626|ref|ZP_02266437.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|167720369|ref|ZP_02403605.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei DM98]
 gi|167739362|ref|ZP_02412136.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
 gi|167816577|ref|ZP_02448257.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
 gi|167824972|ref|ZP_02456443.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 9]
 gi|167846490|ref|ZP_02471998.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei B7210]
 gi|167895067|ref|ZP_02482469.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
 gi|167903453|ref|ZP_02490658.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911704|ref|ZP_02498795.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
 gi|167919702|ref|ZP_02506793.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           pseudomallei BCC215]
 gi|217420684|ref|ZP_03452189.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|226195476|ref|ZP_03791064.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813035|ref|YP_002897486.1| transcriptional regulatory protein FixJ [Burkholderia pseudomallei
           MSHR346]
 gi|238561635|ref|ZP_04609684.1| transcriptional regulatory protein FixJ [Burkholderia mallei GB8
           horse 4]
 gi|242316741|ref|ZP_04815757.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|254178707|ref|ZP_04885362.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|254184353|ref|ZP_04890943.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|254191386|ref|ZP_04897890.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195951|ref|ZP_04902377.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|254200301|ref|ZP_04906667.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|254209377|ref|ZP_04915723.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|254260594|ref|ZP_04951648.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
 gi|254297016|ref|ZP_04964469.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|254357951|ref|ZP_04974224.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|52210327|emb|CAH36306.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52427582|gb|AAU48175.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 23344]
 gi|76580922|gb|ABA50397.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710b]
 gi|121230257|gb|ABM52775.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           SAVP1]
 gi|124294568|gb|ABN03837.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10229]
 gi|126218200|gb|ABN81706.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 668]
 gi|126226036|gb|ABN89576.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106a]
 gi|126241677|gb|ABO04770.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           NCTC 10247]
 gi|134251043|gb|EBA51122.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 305]
 gi|147749897|gb|EDK56971.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           FMH]
 gi|147750150|gb|EDK57221.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           JHU]
 gi|148027078|gb|EDK85099.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|157807044|gb|EDO84214.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 406e]
 gi|157939058|gb|EDO94728.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699746|gb|EDP89716.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           ATCC 10399]
 gi|169652696|gb|EDS85389.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei S13]
 gi|184214884|gb|EDU11927.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1655]
 gi|217396096|gb|EEC36113.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 576]
 gi|225932436|gb|EEH28435.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei Pakistan 9]
 gi|237502844|gb|ACQ95162.1| transcriptional regulatory protein FixJ [Burkholderia pseudomallei
           MSHR346]
 gi|238524253|gb|EEP87687.1| transcriptional regulatory protein FixJ [Burkholderia mallei GB8
           horse 4]
 gi|242139980|gb|EES26382.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1106b]
 gi|243063436|gb|EES45622.1| DNA-binding response regulator, LuxR family [Burkholderia mallei
           PRL-20]
 gi|254219283|gb|EET08667.1| DNA-binding response regulator, LuxR family [Burkholderia
           pseudomallei 1710a]
          Length = 212

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 38/237 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            Q  + +  +DE     +  L       +      +  +          +          
Sbjct: 8   SQETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ---------- 57

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +S     +L   +                 +F      +P  ++   
Sbjct: 58  ----IACLILDVRMSGMSGLELQERLIAEN--------AALPIIFVTGHGDVPMAVSTMK 105

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +    FD A +R  +                 +   A  ++   +       +  
Sbjct: 106 KGAMDFIEKPFDEAELRKLV---------------ERMLEKARNESKSVQEQRAASERLS 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 151 KLTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|323491663|ref|ZP_08096841.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
 gi|323314025|gb|EGA67111.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG
           20546]
          Length = 225

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE++ L  +  G ++ +IA  + IS  TV +++  I +K   K R+ A
Sbjct: 154 SQTTPATVDLTIRELQILRCLISGSSNTQIAEDMFISEFTVKSHLQKIFKKLCVKNRAQA 213

Query: 237 IAYAVRN 243
            ++A ++
Sbjct: 214 ASWARQH 220


>gi|228996711|ref|ZP_04156348.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           mycoides Rock3-17]
 gi|228763030|gb|EEM11940.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           mycoides Rock3-17]
          Length = 55

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G T+ EI   L IS +TV  +I +I  K     R  AI  A+ + ++
Sbjct: 2   LIVLATGATNKEIGKKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54


>gi|156933695|ref|YP_001437611.1| transcriptional regulator NarL [Cronobacter sakazakii ATCC BAA-894]
 gi|156531949|gb|ABU76775.1| hypothetical protein ESA_01517 [Cronobacter sakazakii ATCC BAA-894]
          Length = 216

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 31/241 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +   I+L  +     S V  L + +  +  +              AL             
Sbjct: 5   EPATILLIDDHPMLRSGVKQLVSMAPAITVVGEAGNGEQGIEMAEAL------------- 51

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      + +  +                 +   V +   + +T    
Sbjct: 52  --DPDLILLDLNMPGMNGLETLDKLREKALS--------GRVVVFSVSNHEEDVVTALKR 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
             + Y     +   +   L        ++       +           ++     G+D  
Sbjct: 102 GADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRASRATSGRDVS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +  
Sbjct: 155 QLTPRERDILKLIAQGLPNKMIARKLDITESTVKVHVKHLLKKMKLKSRVEAAVWVHQER 214

Query: 245 I 245
           I
Sbjct: 215 I 215


>gi|23098290|ref|NP_691756.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22776515|dbj|BAC12791.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 207

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   +     I  G+  +      +  +    +       AN           +  LT
Sbjct: 94  DGYFYHSMLEKDIISGIEFIKNGYTYVYPELAKLLHEEYVRIANTL-----QARPEGLLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  I++G  +D+IA+ L IS  TV N++ +I+RK     R+ A+  A R   +
Sbjct: 149 DREWDILIEIAKGNNNDQIALNLEISDKTVKNHVTTILRKLDVNDRTNAMLLAFRKGWI 207


>gi|302337778|ref|YP_003802984.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634963|gb|ADK80390.1| transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM
           11293]
          Length = 264

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             K     + KD+ L+ RE E    + +GKT+ EI   L IS  TV  +IASI RKT  +
Sbjct: 193 RQKEGTEEFAKDYALSPRETEITALLLQGKTNAEICQSLFISLATVKTHIASIFRKTGAR 252

Query: 232 TRSGAIAYAVRNN 244
            R+   A   RN 
Sbjct: 253 NRTELSAL-FRNG 264


>gi|282877369|ref|ZP_06286192.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
 gi|281300421|gb|EFA92767.1| transcriptional regulator, LuxR family [Prevotella buccalis ATCC
           35310]
          Length = 203

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELT 187
             + + D +    G   L     +     +  + +L        + +       K   L+
Sbjct: 82  VLAASIDPSTQLSGFHSLCVN--VPEDQLVRSLLMLEQNAHGGGQRFPSSLKTLKTKILS 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L+ I +G  + EIA  L I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 140 DREIEVLSLIVQGYINKEIADQLNIGMTTVITHRKNIMDKLGVKSVSALTIYAVMHGYV 198


>gi|227818570|ref|YP_002822541.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|36958825|gb|AAQ87250.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234]
 gi|227337569|gb|ACP21788.1| transcriptional regulator, LuxR family [Sinorhizobium fredii
           NGR234]
          Length = 240

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 17  EQRTSF-VSHLPTRSDLLA-RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E R++  V   P   D LA  +  L    S           + A+   L +        L
Sbjct: 25  ELRSALIVDDHPLFCDALAMTLSGLVGIQSIES-----VGTLDAALARLDQDGPPDVVVL 79

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D V  +  +        +             L           N +    
Sbjct: 80  DLNLPDVNGLDGVVRLRQA-----APQIPIVVVSSL---DELRVIRALLKAGINGFVPKH 131

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                 R     +        +  L                 D    +   LT ++ + L
Sbjct: 132 AARDEFRAAFAAIARGEIHAPQMALE---------PGSPSLSDEAVARLGLLTRQQAKIL 182

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +  G  + +IA  L I+  TV  ++ +IMRK   +TR  A+ +A   
Sbjct: 183 QLVCAGLMNKQIAYELSIAETTVKAHVTAIMRKLGVQTRMQAVLFAQEA 231


>gi|298241116|ref|ZP_06964923.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554170|gb|EFH88034.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 938

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 79/252 (31%), Gaps = 27/252 (10%)

Query: 5   IQQVNIVLNRED-EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           + Q+   L   D +Q   ++S L     L++ +      +++   + A +E   A   L 
Sbjct: 700 VDQMRFWLACGDLKQARRWMSDLEQEEPLVSPLARERQHIAYVRLLLAESEPDYALKLLT 759

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    +    V   W     +   + ++ +                          
Sbjct: 760 SLVKRAVATQRWDHVLEMWLLQ-TQAYQMLQRQQD---------------ALAQLAQAVH 803

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 Y     D       L+    K + + +D L  +  L                K+
Sbjct: 804 LAAPEGYIRSFVDEGPSLAALLSQLRKQKPLAKD-LPYLETLLRAFDQQPIPQPTQLEKE 862

Query: 184 F---------ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      L+ RE + L  ++ G ++ +IA  L ++  TV ++I  I+ K     R+
Sbjct: 863 PSLSLQPLLDPLSAREQDVLHLLARGASNQDIAEALVVTPGTVKHHITHILSKLEATNRT 922

Query: 235 GAIAYAVRNNIV 246
            A+A A    ++
Sbjct: 923 QAVARAQALGLL 934


>gi|183598703|ref|ZP_02960196.1| hypothetical protein PROSTU_02115 [Providencia stuartii ATCC 25827]
 gi|188020894|gb|EDU58934.1| hypothetical protein PROSTU_02115 [Providencia stuartii ATCC 25827]
          Length = 228

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           +       +           S   +V      + ++  + +II  D    I L    Q  
Sbjct: 83  IHAHYSFLLKALDLGIQGILSAKIEVNEFLEAIQVVNARSKIISPDIAQSIALKRINQHE 142

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         L+ RE+E +  I++G  + +IA +L +S  TVN Y   +  K   +
Sbjct: 143 Q-------TDLYELLSTRELEIMLLITQGIPTKQIAQVLNLSPKTVNTYRYRMFGKLNIR 195

Query: 232 TRSGAIAYAVRNNIV 246
           +       A+   ++
Sbjct: 196 SDVELTHIAISYGLI 210


>gi|307706263|ref|ZP_07643077.1| competence protein A [Streptococcus mitis SK321]
 gi|307618354|gb|EFN97507.1| competence protein A [Streptococcus mitis SK321]
          Length = 198

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 23/125 (18%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A     +   + +   +   L  ++  G++   + + E+                  
Sbjct: 93  RAKAMGAYGFLDKSMNPDELVKKLEKIYLGGKVFSDEVMVEV------------------ 134

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A
Sbjct: 135 -----LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIA 189

Query: 241 VRNNI 245
            +   
Sbjct: 190 EQLGY 194


>gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7]
 gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
 gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19]
          Length = 193

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 3/116 (2%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            ++  D       L  +        ++ + E             S +     + +L+ RE
Sbjct: 74  TAILIDSTEEHGALSSMNRITLRSSQETIIEQ---LQQLFTSDSSGNTTTENNKDLSSRE 130

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT SG   YA+ N I+
Sbjct: 131 VDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNGII 186


>gi|183221711|ref|YP_001839707.1| two-component regulatory LuxR family response regulator [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911786|ref|YP_001963341.1| two component response regulator receiver protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776462|gb|ABZ94763.1| Receiver component of a two-component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167780133|gb|ABZ98431.1| Putative two-component regulatory response regulator, LuxR family
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 206

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 72/241 (29%), Gaps = 37/241 (15%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +  ++L  +       V H+   S+    +   + +      +                
Sbjct: 3   PKKKVLLVEDHAVTRVGVKHVVNASNDFEVVGEAEHSSQIANLLQET------------- 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +  +   ++V+             L +   +   +    P   +    
Sbjct: 50  --RPDFVLLDLRIPGENVLNMVKDWKKD--------LPQLKVVTLTMLDEQPIVHSAIEA 99

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + Y   + D++ +   L  +     +  ++             N          K   
Sbjct: 100 GVDGYLLKSDDLSSLTRNLNEIASGKTVYSKNL--------KLSFNRKPQDGKVANK--- 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
              +E + LT + +GKT  EI   +G+S+ TV  ++  +  +   KT +  I  A    +
Sbjct: 149 ---KEKQILTLLGQGKTYQEIGTDIGLSKRTVEYHVGRLKDRFNAKTVAELIGRAKEQML 205

Query: 246 V 246
           +
Sbjct: 206 I 206


>gi|163853849|ref|YP_001641892.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|240141303|ref|YP_002965783.1| two component transcriptional regulator [Methylobacterium
           extorquens AM1]
 gi|254563812|ref|YP_003070907.1| two component transcriptional regulator [Methylobacterium
           extorquens DM4]
 gi|163665454|gb|ABY32821.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|240011280|gb|ACS42506.1| two component transcriptional regulator [Methylobacterium
           extorquens AM1]
 gi|254271090|emb|CAX27097.1| two component transcriptional regulator [Methylobacterium
           extorquens DM4]
          Length = 229

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 13/210 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----LVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +D           + E  G    +    +V       +    +V  D  F       
Sbjct: 22  VLVIDDHPIVLQGCRRVLEDAGIETVVEATGVVSGYRAFHRLRPPVVICDLTFQGSGLAG 81

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L+   +   +      L   + +               Y         +      +    
Sbjct: 82  LALIRRMRAIEPETRVLVFSMHNDPVIVSRALEAGALGYVLKDHASNELFQAFERVRAGE 141

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             + R    E+ +L           D     + +LT RE + L  +++GK+   IA  L 
Sbjct: 142 VYLDRRLATEVAML---------RADPRRTPETQLTPREQQILARLAQGKSYGAIAADLS 192

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +S  TV N  + + +K   +T +  I  AV
Sbjct: 193 VSYKTVTNACSQMRQKLRVRTLAELIHVAV 222


>gi|161503121|ref|YP_001570233.1| transcriptional regulator NarL [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864468|gb|ABX21091.1| hypothetical protein SARI_01186 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 216

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N ++      +   P     + +++ +   V             G     L        
Sbjct: 1   MNNQEPATILLIDDHPMLRTGVKQLVSMAPDVCVVGEASN-----GEQGIELAESLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +T      + Y 
Sbjct: 56  ILLDLNMPGMNGLETLDKLREKALSGRIVVF--------SVSNHEEDVVTALKRGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGRE 190
               +   +   L        ++       +           ++      +D  +LT RE
Sbjct: 108 LKDMEPEDLLKALQQAAAGEMVLSEALTPILA-------ASLRANRATTDRDVTQLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +  I
Sbjct: 161 RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 215


>gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 301

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 63/221 (28%), Gaps = 38/221 (17%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V       ++L R+         T       +  G    +L            + + 
Sbjct: 111 VDYVVKPLRIPEVLVRLATHVRNAHATRLAREAVDVAGMGVVMLDSQGRIAWCSPQAAL- 169

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  +      +  +                    + +   +G       +      
Sbjct: 170 ------WLDSSFADQAPQ-----------------ARADWLQSASGA--GEIFMPMPGGG 204

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                 L                   +     +  +       +  LT RE E L W+++
Sbjct: 205 RLGARHLGASG------------LTESMLLLRLAAADTPPRQPEVPLTPRETEVLAWLAK 252

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKT+ +IA ILG+S  TVN ++  I  K   +TRS A A A
Sbjct: 253 GKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRSAATAVA 293


>gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
 gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp.
           DG881]
          Length = 216

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M N         A +  G+  +F       R  L    + +      F         +  
Sbjct: 104 MVNGGFQHDCPQALLSKGIKAIFDGELWFPRAVLQTYLMKSRTFNKTFSRS------EVS 157

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT REVE L  ++ G  + EIA  L +S +T+  +I +I +K     R  A+ +A  N
Sbjct: 158 LTDREVEVLKVMATGAKNSEIASSLNLSPHTIKTHIYNIFKKINASNRLQAVNWAQEN 215


>gi|227818474|ref|YP_002822445.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gi|227337473|gb|ACP21692.1| putative transcriptional regulator protein, LuxR family
           [Sinorhizobium fredii NGR234]
          Length = 263

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 18/206 (8%)

Query: 53  TEYVGASHFLLVRWDLFQEQ-KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
             +       L   D   +   +D  +   +        ++           +       
Sbjct: 42  ARFQDQDIVSLADADGLLDHNLIDVSLVILYSLPAAEFPSIMRTIHE--FHPKAAVGVMV 99

Query: 112 VFHTLPE---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                 +         G+ +    L  ++      + LL   G       L  +      
Sbjct: 100 QNADELDSSIADLVDEGLVHGVLPLNLNLDVCLTAIDLLMKGGEHFPAALLRRLAP-GGL 158

Query: 169 QANMFKSYDVHWGKDFE-----------LTGREVECLTWISEGKTSDEIAVILGISRNTV 217
             +          +D +           L  RE++ L  I  G  +  IA  LG+S NTV
Sbjct: 159 AGSGVLGQKPASSEDVDMERKTDFAQGLLRMREIQILDLICVGTPNKIIAHRLGLSENTV 218

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRN 243
             ++ +I +K     R+ A +   R+
Sbjct: 219 KVHVRNIYKKMNVHNRTEAASRCFRS 244


>gi|312796856|ref|YP_004029778.1| transcriptional regulator, LuxR family [Burkholderia rhizoxinica
           HKI 454]
 gi|312168631|emb|CBW75634.1| Transcriptional regulator, LuxR family [Burkholderia rhizoxinica
           HKI 454]
          Length = 294

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 9/226 (3%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
            ++ +++ ++  L+        +  L   +   + F   R     ++ L          D
Sbjct: 4   LSQGEVVMKVCLLNEQAERREGLKTLLRQINRHASFYDARDWRQAQRILQHACPDMLVID 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               M + +                    +     +              +   I     
Sbjct: 64  WQDGMNVQDIFDLRRHYPNLPIAALVDDDSPTRVKSLVDAGVLGVVPRRLNPRLIVRAFE 123

Query: 146 LLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISE 199
           ++   G  +    L      +  + AY+ +                L+ R+ + L  +  
Sbjct: 124 IVLLGGHYVPPSGLNLHTPTVVPINAYEDSSLNRAACRRQSASPGLLSPRQEQILRLVHM 183

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           G T+  IA  LGIS  TV  ++ +I  K     R+ A+  A+ N  
Sbjct: 184 GATNKSIARALGISEGTVKIHLGAIFEKLGATNRAAAV--AIYNGW 227


>gi|86359865|ref|YP_471756.1| conjugal transfer transcriptional regulator protein [Rhizobium etli
           CFN 42]
 gi|28453858|gb|AAO43545.1| transcriptional activator protein TraR [Rhizobium etli CFN 42]
 gi|86283967|gb|ABC93029.1| conjugal transfer transcriptional regulator protein, LuxR family
           [Rhizobium etli CFN 42]
          Length = 239

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 22/232 (9%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           L+  +      VS  + +       G   +  +     +    +    +++P D      
Sbjct: 13  LIDTVEASQDEVSVKVALRNYGAAFGLERYAYL-----EASGAEVRTFNNYPKDWQEAYL 67

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL-------------PENITPPAGMDNRYCSLTFDVA 138
                +   V+            T                      G+ +     T    
Sbjct: 68  SGHYTRIDPVVTEAKRRQEAFGWTADNWPARGTSDLRKFREQAVDHGLRSGVTIGTDGSF 127

Query: 139 RIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
              + L     + R     + +       LL  +    F +          L+ RE+ CL
Sbjct: 128 GSHLMLTFATSEARTDLVEMQQTFQALQALLVVHYRLRFIAARTQLAPKRTLSPREMTCL 187

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W ++GKT+ E A++ GI+  TV +Y+     K   ++    +A A    ++
Sbjct: 188 LWATKGKTAPETAMLTGINARTVQHYLDKAREKFDAQSVPQLVAIAKDRGLL 239


>gi|124267788|ref|YP_001021792.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124260563|gb|ABM95557.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 222

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 61/229 (26%), Gaps = 20/229 (8%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R +             R++ L+  ++             A        D      LD 
Sbjct: 9   PLRVALADDHAVVRAGYRRLLELEADIAVVAEYGDAESAYNALAGGASSGDDIDLLVLDL 68

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +L+R +A    D         + L   +  +              + + +  
Sbjct: 69  SMPGRSGLELLRRLAQRRPD--------LSVLVFTMHDSAAMLDQCLRAGAAGFVTKSSA 120

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +         +  D                 +          L+ RE + L  
Sbjct: 121 PEVLVTAVRQAARGEIALSPDVAA------------LAARSEGGPPHTRLSSREFDILQQ 168

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  G+  +EIA  L +S  TV NY   I +     +    + YA  + +
Sbjct: 169 LLAGRGVEEIAQTLRLSTKTVANYQTRIRQALGVGSAVELLNYAREHGL 217


>gi|166030393|ref|ZP_02233222.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
 gi|166029751|gb|EDR48508.1| hypothetical protein DORFOR_00054 [Dorea formicigenerans ATCC
           27755]
          Length = 208

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 21/173 (12%)

Query: 75  DSIVSSDWPFDLVRCM-ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           D I+      D    + A  E  K+   ++       P                + +   
Sbjct: 51  DLILMDILMSDGSNGLSAACEIKKFRPEVKIIAVTSMP---ETSWLTRAREIGIDSFWYK 107

Query: 134 TFDVARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                 I   +   +  +                    +      V      E T RE+E
Sbjct: 108 EASKETILQVMDRTMSGESVYP----------------DKVPQVKVGMATSHEFTEREME 151

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  ++ G ++  IA  L IS +TV N+I  ++ KT  ++R+     A  + I
Sbjct: 152 VLRLMTTGASNAAIAEKLVISESTVKNHIHRMLEKTGCESRTELAIEARISGI 204


>gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 301

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 32/223 (14%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +++     ++L+AR+         T   +   + +G + F         +       +
Sbjct: 105 VDYITKPVRPNELIARIRVHLNNARMTQSAHTTLDRLGQTSF-------STDAAGQWHWA 157

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +     L+    +        + +              +    P  +  RY      V+ 
Sbjct: 158 TPHTDQLLEKAKVERSALADPIQRWLKHQPE----RGQQLNKLPGNLGLRYLG--HSVSG 211

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
                 L     R++  D   E+ LL                    +T RE + L WI+ 
Sbjct: 212 EENSEHLF----RLLHHDSDAELELLKTALH---------------VTHRESQVLVWIAH 252

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           GKT+ EIA IL +S  TVN ++  I RK   + R+ A A  ++
Sbjct: 253 GKTNREIAQILELSPRTVNKHLEQIFRKLGVENRTAAAAMVIQ 295


>gi|27382083|ref|NP_773612.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27355253|dbj|BAC52237.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 261

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 12/207 (5%)

Query: 45  WTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
               +    + +       +   D    + +  ++ S     +       +         
Sbjct: 33  ILHVLRRELDELEILDMATVQGLDCTSARDVRLVMLSIADKPIGDPSVEDDLAFVAECCP 92

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW--- 160
               +        P            + S +  +     GL L+   G            
Sbjct: 93  NAATVVLSNHDDEPTVQAAMQRGVRGFLSTSLPIEIAIAGLRLVLVGGAYRPLPVARMNR 152

Query: 161 --------EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                     GL+ AY  N      +      +LT RE + L  +  G  +  IA  LG+
Sbjct: 153 ITDFEPPDARGLVPAYLINEGARVAIDRRSVTDLTPREQQVLAELELGLPNKLIAAKLGL 212

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAY 239
           S +TV  +I  IMRK A   R+ A+  
Sbjct: 213 SESTVKMHIQHIMRKCAAHNRTEAVLR 239


>gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 359

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 70/225 (31%), Gaps = 24/225 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LARM           +     +  G +   +   D         +  
Sbjct: 148 VDYVTKPIKPKEVLARMGVHLAGARERRQTRNALDAFGYATITVRAADGC------LMWQ 201

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFC-PVFHTLPENITPPAGMDNRYCSLTFDVA 138
           +    DL+     ++       +    +     V                R         
Sbjct: 202 TPLARDLLERYCGTQAPNTPPEVLGWLQACLQTVARGDEPAKLSLERGPKRLTFRLH--- 258

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             +IG         I++R+      + A                 F+LT RE E L W+ 
Sbjct: 259 -QQIGDSDAGGDWLIVMREVSDTAVIEAMSL-------------SFKLTAREAEVLYWVV 304

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +GKT+ +I  ILG S  TV  ++  +  K   +TR+ A   A+  
Sbjct: 305 KGKTNKDIGDILGSSPMTVKKHLERVFVKLGVETRTAAAGMAMSR 349


>gi|227505759|ref|ZP_03935808.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197727|gb|EEI77775.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 207

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 64/239 (26%), Gaps = 33/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I +  +++   S ++ L    D L              R            + L    
Sbjct: 2   LSIAIVDDEQLIASSLATLLELEDDLKVTETFASGEELLSRWEK--------AYTL-NSP 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L      D  +      +L + +           +   T    P      +     A   
Sbjct: 53  LPDVLVTDLQLGGMDGVELAKEIPRLSPQT---AIVIVTSHSRPH-----QLKRALASGV 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T         +  +      I ++                            LT
Sbjct: 105 QGFLPKTATAEEFATAIRTVHKGRSFIDQELAA----------------TTITANSSPLT 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +     G + ++IA  + ++  T  NY++S M K   + R  A   A  +  +
Sbjct: 149 EREAEVIEAAGNGGSIEQIAKEVFLATGTTRNYLSSAMAKLGAQNRFEAYLRARESGWI 207


>gi|320158185|ref|YP_004190563.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
 gi|319933497|gb|ADV88360.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O]
          Length = 212

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 165 LAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           ++    +  + +     K+   +LT RE + +T +S G ++ +IA  L +  NTV  ++ 
Sbjct: 124 ISQEFISTLRQHSKPISKNVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLH 183

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           +I +K   K R  A+ +A  +
Sbjct: 184 NIFKKIDVKNRVQALIWAKEH 204


>gi|320333213|ref|YP_004169924.1| two component LuxR family transcriptional regulator [Deinococcus
           maricopensis DSM 21211]
 gi|319754502|gb|ADV66259.1| two component transcriptional regulator, LuxR family [Deinococcus
           maricopensis DSM 21211]
          Length = 194

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 58/221 (26%), Gaps = 30/221 (13%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D     + L   ++            G +   L          LD  +      +
Sbjct: 3   VLIADDHPLFRMGLRYALTAQGFTVIAEAADGHAALQLALTHRPDVALLDVKMPGLTGIE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +  +        +          F       +        Y S             
Sbjct: 63  VAERLRTT-----APGVLVALITT---FQEPAIIQSARRAGARAYLSKETPP-------- 106

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
                          ++        +      +       LT RE + L  +++G+++ E
Sbjct: 107 --------------QDLARQLRALMDRPFDDHLPHVTVPTLTPREGDVLRLLADGQSNKE 152

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  LG+S  TV  ++A +  K     R  A+  A    ++
Sbjct: 153 IARSLGVSPETVKEHLARMYVKLDAPDRVSALNKARTLGLI 193


>gi|27367915|ref|NP_763442.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
 gi|27359488|gb|AAO08432.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6]
          Length = 221

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 165 LAAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           ++    +  + +     K+   +LT RE + +T +S G ++ +IA  L +  NTV  ++ 
Sbjct: 133 ISQEFISTLRQHSKPISKNVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLH 192

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           +I +K   K R  A+ +A  +
Sbjct: 193 NIFKKIDVKNRVQALIWAKEH 213


>gi|333004174|gb|EGK23706.1| regulatory protein sdiA [Shigella flexneri K-272]
 gi|333017786|gb|EGK37093.1| regulatory protein sdiA [Shigella flexneri K-227]
          Length = 208

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 13/198 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGIS 213
           W +EGKTS EIA+IL I+
Sbjct: 190 WTAEGKTSAEIAMILSIT 207


>gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 235

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 73/222 (32%), Gaps = 16/222 (7%)

Query: 41  CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV---SSDWPFDLVRCMALSEKDK 97
             +  + ++  + + + A +F L   +   +      +    +++  +      +  K  
Sbjct: 13  SLLELSSKLKIIQKRIKARNFALYTINCALDSPRRQQLVCELNNYDPESGEIPNILIKTY 72

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPA-------GMDNRYCSLTFDVARIRIGLM----- 145
               L        P+     +  T           +D            +R+G       
Sbjct: 73  GDEFLFHFNSGLLPIIWNNMQEETIIESSGQFFIRLDKGILPFAGIAFPLRLGFHKNGYV 132

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQ-ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +   +  ++  + + E               +         LT RE  CL    +G TS+
Sbjct: 133 VFTAECLMLANEVIIEAHGACYQVIMGFLALFKKRSSAARNLTERETSCLQLAGDGYTSE 192

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  LG+S +TVN Y+ S   K     R  AIA A+R   +
Sbjct: 193 EIAKKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234


>gi|37676042|ref|NP_936438.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
 gi|37200582|dbj|BAC96408.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016]
          Length = 224

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 165 LAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
           ++    +  + +     K    +LT RE + +T +S G ++ +IA  L +  NTV  ++ 
Sbjct: 136 ISQEFISTLRQHSKPISKTVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLH 195

Query: 223 SIMRKTATKTRSGAIAYAVRN 243
           +I +K   K R  A+ +A  +
Sbjct: 196 NIFKKIDVKNRVQALIWAKEH 216


>gi|297516127|ref|ZP_06934513.1| DNA-binding transcriptional regulator CsgD [Escherichia coli OP50]
          Length = 114

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 33  LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 92

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 93  FKKIAVKNRTQAVSWA 108


>gi|297622465|ref|YP_003703899.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297163645|gb|ADI13356.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 176

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           T  + I         Y S   D A++   L  L        R+ L               
Sbjct: 64  TEDDVIRLLQRGYRGYLSPQDDDAQLFKALQALRRGEIWASRELLTR------------- 110

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
              +      +LT RE E L  +++G ++  I   LGIS  TV  ++A++  K   +TR 
Sbjct: 111 --TIGSLSTPQLTEREREVLGLLAQGLSNRAIGERLGISERTVKTHVANLFDKFGVRTRL 168

Query: 235 GAIA 238
              A
Sbjct: 169 ELAA 172


>gi|194438019|ref|ZP_03070112.1| transcriptional regulator CsgD [Escherichia coli 101-1]
 gi|194422955|gb|EDX38949.1| transcriptional regulator CsgD [Escherichia coli 101-1]
          Length = 190

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 109 LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 169 FKKIAVKNRTQAVSWA 184


>gi|188583108|ref|YP_001926553.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179346606|gb|ACB82018.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 213

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 64/223 (28%), Gaps = 25/223 (11%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVR---------WDLFQEQKLDSIVSSDWPF 84
           A +  +D   +    +  L +  G    L              +      D  +      
Sbjct: 4   ALVHVVDDDPAMRDSVAFLLDTAGFDVRLYAAGTILLERLARPVRGCVLTDIRMPGLDGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L RC+  +       V+             +P  +         +    FD   +   L
Sbjct: 64  ALFRCLRSAGHTH--PVV------MMTGHGDVPLAVEAMKLGACDFIEKPFDGEALLQAL 115

Query: 145 MLLFPKGRI--ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
                +G    +       +            S      +   L+ RE + L  +  G T
Sbjct: 116 HGALERGGQNGMDPSPDPALHPTLH------PSLQDFVRRLATLSERERQVLDHLVAGGT 169

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S EI   LGIS  TV  Y A +M KT   T    + +AV   +
Sbjct: 170 SKEIGRRLGISPRTVEIYRAKVMAKTRAGTLQELVRWAVLAGL 212


>gi|329944179|ref|ZP_08292438.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530909|gb|EGF57765.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 223

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 5/217 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     +  +    G    +     +  +Q +D ++      
Sbjct: 10  RVLIVDDDPLIRTTFAEQLDSQRAITVVAAASGGRQAI--SLLMTGQQPIDVVLLDSDMP 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+          + +  +         VF          A   N + +       +   L
Sbjct: 68  DMDGARTARAIYERFPRMPIVMF---TVFSRDEMLTDALAEGVNGFITKDESTENVAAAL 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +       ++       +      +     +         EL  R  +  T + EG T+ 
Sbjct: 125 LRASRGEPVMSSRPTKMLVDAYQSEQKRATAEARIQELVNELPPRLQDVYTCLLEGLTNR 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            IA  LGIS NTV  Y++ ++ +    +R+  IA A+
Sbjct: 185 RIARKLGISENTVRIYVSEVLHRLGHTSRTELIAAAL 221


>gi|300703841|ref|YP_003745443.1| response regulator transcriptional regulator protein [Ralstonia
           solanacearum CFBP2957]
 gi|299071504|emb|CBJ42828.1| putative response regulator transcription regulator protein
           [Ralstonia solanacearum CFBP2957]
          Length = 211

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 65/235 (27%), Gaps = 31/235 (13%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       V H+  R+     +                          LVR    Q
Sbjct: 1   MIADDHAVMRDGVRHILERAGDFEVVCEASDGTQVLQ---------------LVRDHRPQ 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      DLVR +                 L   +                 Y
Sbjct: 46  VIVLDLSMPGRSGLDLVRQLNAEH--------PGVRVLVLTMHAEEQYVARAFRAGAAAY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +       +   L  +   G  +  D   ++              D        L+ RE
Sbjct: 98  LTKESAATELVTALKKVAQGGAYVSPDMAEKLA--------HSLHEDSVAQAHTRLSDRE 149

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E    +  G+   +IA  L +S  T++ Y   +M K    + +  + YA+R+ +
Sbjct: 150 MEVYRRLVRGEALTDIAASLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHQL 204


>gi|291543163|emb|CBL16273.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Ruminococcus bromii L2-63]
          Length = 212

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             + T RE+E L  ++ G T+ EIA  L I+  TV NYI  ++ KT  K+R+     A  
Sbjct: 140 STDFTERELEVLRELTSGDTNTEIAKRLYIAPGTVKNYIQYMLEKTGFKSRTELAVKARE 199

Query: 243 NNIV 246
             +V
Sbjct: 200 AGLV 203


>gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4]
 gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination
           protein) [Bacillus pseudofirmus OF4]
          Length = 74

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
              +G    LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   GAEFGPKPLLTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VIELIRLG 70


>gi|268590894|ref|ZP_06125115.1| DNA-binding response regulator, LuxR family [Providencia rettgeri
           DSM 1131]
 gi|291313687|gb|EFE54140.1| DNA-binding response regulator, LuxR family [Providencia rettgeri
           DSM 1131]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 73/242 (30%), Gaps = 28/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +VL  +     S +    ++S  L  +            +               
Sbjct: 1   MKKLKLVLVDDHPIVLSGLKDTLSQSMNLDILGAYTQDAELFAFLKK------------- 47

Query: 65  RWDLFQEQKLDSIVSSD-WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
             +       D ++ ++    D    +    +      +   T +  P+   +  +    
Sbjct: 48  --NEVDVIVTDYMMPNNTQSSDGQNYIQFLRRQYPNIAVIVLTMVSNPMIVQMLYDS--- 102

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               +   S    +  +   + L     +  +        L         ++      + 
Sbjct: 103 --GVSAVVSKEAPLGDLMKAITLAGQGRQYRVPVADMTTTL-------KSRNAVTLNDRV 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E L    +GK   +IA  L  S  T++    + MRK         I+Y + +
Sbjct: 154 KTLSPRELEVLRLFVQGKPIVDIAKQLNRSDKTISLQKNAAMRKLGVDNNQALISYCLTH 213

Query: 244 NI 245
           ++
Sbjct: 214 HL 215


>gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing
           magnetic vibrio]
          Length = 261

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 68/240 (28%), Gaps = 19/240 (7%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL-VRWDLFQEQKLDSIVSSDWPF 84
           L   S     +    C     M +       G    +          ++L+    S++  
Sbjct: 20  LQEASAFFELLQAQSCIDDCWMALLEEVGRHGFDWAMYGFGRRRNDSEELEITYFSNYSK 79

Query: 85  DLVRCMALSEKDKYYNVLQRPTELF-------------CPVFHTLPENITPPAGMDNRYC 131
           +           +                                 +     +G+ N   
Sbjct: 80  EWQDEYEKLGGSQNDIDTLHCISSTEDQIFFSPETRENLTPEQKAIDEFAQRSGIKNGIS 139

Query: 132 SL-----TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                    +          +       + D   +   L A   +              L
Sbjct: 140 FPLRAGPDINDWGGLGLSTRMDDDEFSAVLDERRDYLRLIAQVFHAVTQSRPLAKNALLL 199

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +E + L+  ++G  + +IA  LG+S   V+ +IA    K A+ TR+ A+A A+R +I+
Sbjct: 200 TEKEKQALSLTAKGLKTKQIADKLGMSDKAVDQHIARATAKLASTTRTQAVAEAIRLHIL 259


>gi|17227478|ref|NP_478660.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134944|dbj|BAB77499.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 223

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 13/210 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
             ++ +    +   A +  +G     L+         +D ++      +L R +  +   
Sbjct: 19  AAIEQSPDIEVTGSATSGKIGFQ---LIEQVNPDVVLVDLLLPDMSGLELTRSIKRN--- 72

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
               V+    E      ++            + Y   + DV  I + +   +    ++  
Sbjct: 73  TNSKVVIFTNETHSDFINS------AFRHGADSYMLKSADVELIELAIKRAYFDECLLDP 126

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++ L + YQ        V        T R+++ L  +++G    +IA  + +S +T
Sbjct: 127 KLAKKL-LESLYQNRYIDPTFVDKNLIDPPTERQIQVLRLLAQGLVFQDIAKEMFLSVST 185

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  Y + +  K   K R  AI        +
Sbjct: 186 VKQYASDLYSKWHVKNRYEAIKRGAMLGYI 215


>gi|73662755|ref|YP_301536.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495270|dbj|BAE18591.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 201

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       +  L   ++ L  +                    G   + L++  
Sbjct: 3   INIILAEDQTMLREAMVQLINLNEQLEVVGSSGN---------------GKEAYELIKVR 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +++R +   + D           +    F       +  A   
Sbjct: 48  QPQVAILDIEMPGMTGLEILRNIKEQQLD--------VKVIIVTTFKRPGYFESAVANDV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +    +      +  +                 + +   LT
Sbjct: 100 DAYVLKERSIDELVTTIYKVLNNEKEYSEALMTSL-----------------FKEKNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  I EG TS EI+  L +S  T+ NY ++I+ K   + R  A   A     +
Sbjct: 143 PKEQLVLREIGEGHTSKEISKHLFLSYGTIRNYTSTIIDKLDAENRFEAWNIARNKGWI 201


>gi|239930320|ref|ZP_04687273.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438665|ref|ZP_06578055.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341560|gb|EFE68516.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 206

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +S    +  + E   G     + R        LD  +     
Sbjct: 8   RLLLADDEHLIRGALATLLSLEDDLLVVAEAATGPEALAMARAHAPDVAVLDLQMPGADG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   +           L     L               A     +   T    R+   
Sbjct: 68  VKVATSLRAE--------LPGCRVLIVTSHGRPGHLKRALAAGVRGFVPKTVSAQRLAEI 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +  +                   D     D  LT RE E L   ++G   
Sbjct: 120 IRTVHAGNRYVDPELAA----------------DAIAAGDSPLTAREAEVLELAADGAPV 163

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S+ TV NY++S + K   + R  A+  A     V
Sbjct: 164 AEIAERAALSQGTVRNYLSSAVSKLGAENRHTAVRLARERGWV 206


>gi|150395391|ref|YP_001325858.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150026906|gb|ABR59023.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 215

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 62/240 (25%), Gaps = 30/240 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +       +    +       ++      +                    
Sbjct: 1   MPELTIIIADDHPLFRGAMRQALSSLSGAPAIVEAGDFAAARKSA--------------A 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +  +                 +                
Sbjct: 47  ENPEADLMLLDLTMPGVSGLSGLIALRAE--------FPSLPVMIVSAHDDPATIHRALD 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + S +  +  IR G+  +      +                           +  
Sbjct: 99  LGAAGFLSKSAGIEEIRDGIAKVMAGEVFVPAGYDRN--------QEYEPEVADLLHRLQ 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT ++   L+ ++EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+    +  
Sbjct: 151 TLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLG 210


>gi|39934752|ref|NP_947028.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192290274|ref|YP_001990879.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|39648602|emb|CAE27123.1| ptwo-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
 gi|192284023|gb|ACF00404.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 208

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 37/239 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN +     + +  +D      +S + + +                     +    G S 
Sbjct: 1   MNEQAAGGEVFVVDDDPAVRETLSIVLSAAGY-----------------QVICFADGESL 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             + R        LD  +      D++  +   +      +     +        +   +
Sbjct: 44  LAVARSRSPACILLDVHIPGRSGLDILAELHAEDYP--APIFMISGKG------DIAMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F    I   +     +  I    R  + G  +   +  F   +   
Sbjct: 96  NAIKNGALDFIEKPFRGKEIVSRV-----EEAIEAFSRRRDAGQGSKAPSYNFPGKEP-- 148

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT RE E L   S G T+ E    LGIS  T+  + A+IM+K   +  +  +  
Sbjct: 149 -----LTLREREVLELFSAGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLVRI 202


>gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803]
 gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803]
          Length = 89

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 39/63 (61%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+E L  ++ G T+ E++  L IS+ TV+N++++I+ KT T+ R   + +A+
Sbjct: 8   PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWAL 67

Query: 242 RNN 244
           +  
Sbjct: 68  QWG 70


>gi|288961322|ref|YP_003451661.1| two-component response regulator [Azospirillum sp. B510]
 gi|288913630|dbj|BAI75117.1| two-component response regulator [Azospirillum sp. B510]
          Length = 210

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 58/237 (24%), Gaps = 32/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +     +    L       A +  +         +               R + 
Sbjct: 4   TILLVDDHPIVRAGCQRLLAE----AALGRVVEAEDVGSALDR------------WRAER 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD     + P +      L         +                          
Sbjct: 48  PDVVILDL----NIPGEGGGMAVLRAIQAESPAVPVLIFSM---HEDPAIAARTLKAGAR 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +       +   +  +      +      E+ L+         +          LT 
Sbjct: 101 GYVTKNDAPDSLASAIGTVLAGRIHLDNGLARELALM---------TLTPTADPLAGLTQ 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E L  +  G T+  IA  LGIS+ TV N    I  K    +    I  A+ + +
Sbjct: 152 REREILGLVGRGLTTAAIADRLGISQKTVANACTQIKDKLGADSARALIRIAIDSGL 208


>gi|227875302|ref|ZP_03993444.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269978189|ref|ZP_06185139.1| sensory transduction protein LiaR [Mobiluncus mulieris 28-1]
 gi|306818564|ref|ZP_07452287.1| LuxR family DNA-binding response regulator [Mobiluncus mulieris
           ATCC 35239]
 gi|307701046|ref|ZP_07638071.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|227844207|gb|EEJ54374.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933698|gb|EEZ90282.1| sensory transduction protein LiaR [Mobiluncus mulieris 28-1]
 gi|304648737|gb|EFM46039.1| LuxR family DNA-binding response regulator [Mobiluncus mulieris
           ATCC 35239]
 gi|307614041|gb|EFN93285.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 36/237 (15%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            E  +  +++  + E     ++ +  R+  L  +           R              
Sbjct: 2   IEPAETRVMIVDDHEIVRRGIAEIVDRAQGLVVVAEAGSVSEALSRAE------------ 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      DL+  + +   +           +    F         
Sbjct: 50  ---LANPNVVLVDLQLPDGTGIDLMGQLRILVPESRC--------IVLTSFDDDAALAES 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T     I   +  +     ++    +              +S   H   
Sbjct: 99  LEVGAAAYLLKTVAGVEIANVIKAVAAGRTLLDERTVT-------------RSSSKHADP 145

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              LT  E + L  I +G ++ EI   LG++  TV N+I +++ K   + R+   A+
Sbjct: 146 TESLTPTERKILNLIGDGLSNREIGESLGVAEKTVKNHITALLSKMGLQRRTQVAAW 202


>gi|227327824|ref|ZP_03831848.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
 gi|290454909|emb|CBJ57167.1| homologue of Erwinia virulence regulator [Pectobacterium
           carotovorum]
          Length = 204

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                  T  V  I   L  +      +  D               +   +   GK   L
Sbjct: 97  VMGVILKTSPVDSIAQALKTVSMGMVCLPDD---------GVIYEGWSVDNSVKGK---L 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 145 SERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|167578474|ref|ZP_02371348.1| transcriptional regulator, LuxR family protein [Burkholderia
           thailandensis TXDOH]
          Length = 296

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 50  PRFAPRLGIAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 109

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 110 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLARDHAARGSDALDGFLRVMHDD 168

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 169 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASA 228

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 229 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 288

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 289 FASSRGLI 296


>gi|53719635|ref|YP_108621.1| putative two component regulatory system response regulator
           [Burkholderia pseudomallei K96243]
 gi|254297922|ref|ZP_04965375.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           406e]
 gi|52210049|emb|CAH36023.1| putative two component regulatory system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|157806813|gb|EDO83983.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           406e]
          Length = 206

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 59/221 (26%), Gaps = 17/221 (7%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D    ++ +   ++    +  + E    A    L+          D  +      D
Sbjct: 2   LIADDHPLVLLGVRHMLAGMGDVSIVGEAHDPAGLLALLAATPCDIVITDFAMPEQPAAD 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
            +  +                 +   +        T          S   D+  +   L 
Sbjct: 62  GLAMLTAIRDGYPS-----VRVIVLTMLDNPVLMHTMRQAGALAVLSKRGDLDELPRALA 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            ++                +  +                +L+ RE+E +   + G T  +
Sbjct: 117 AVYQGRP-----------FVGTHAGAAGGGAMRGTDAPRQLSPREIEVVRLCATGMTMTD 165

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA   G S  TV+ +  + M K   K+      YA  N +V
Sbjct: 166 IANRYGRSIKTVSTHKHNAMGKLGLKSDVDLFMYATENGLV 206


>gi|254247770|ref|ZP_04941091.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124872546|gb|EAY64262.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 212

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 38/236 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q  + +  +DE     +  L       +      +  +          +           
Sbjct: 9   QETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ----------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +S     +L   +                 +F      +P  ++    
Sbjct: 58  ---IACLILDVRMSGMSGLELQERLIADN--------AALPIIFVTGHGDVPMAVSTMKK 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   TFD A +R  +  +  K               A  ++   +       +  +
Sbjct: 107 GAMDFIEKTFDEAELRKLVERMLDK---------------ARSESKSVQEQRAASERLSK 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 152 LTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLAL 207


>gi|171463435|ref|YP_001797548.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192973|gb|ACB43934.1| two component transcriptional regulator, LuxR family
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 214

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 37/235 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  +V   +DE     ++ L   +  + R         +   + +               
Sbjct: 11  QAEVVYVVDDEAVRDSLTWLLESNGYVVRC--HASAERFLQSLQS------------TDK 56

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +L   +                  F      +   ++     
Sbjct: 57  STISCAILDVRMPGMSGLELQERLTSENLPM--------PVAFITGHGDVSMAVSTMKRG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +    F    +   +                 +   A    +      +      +L
Sbjct: 109 AVDFIEKPFKENDLCGLV---------------DRMLTKARIDYSQASQRKITQSLLSKL 153

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           TGRE + L  I  G+ + +IA  LGIS  TV  + A+I+ K    T +  +  A+
Sbjct: 154 TGRERQVLERIVAGRLNKQIADDLGISIKTVEAHRANIIEKLNVNTVADLLRLAL 208


>gi|302335061|ref|YP_003800268.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
 gi|301318901|gb|ADK67388.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Olsenella uli DSM 7084]
          Length = 787

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR---IILRDRLWEIGLLAAYQ 169
                            Y           + L+    +      +  D+L  +   A  Q
Sbjct: 650 DWRRWIADALDQAKRYGYVRTITLYGAAVLPLLTEARRHAKEMGVDEDQLARLVRGARAQ 709

Query: 170 ANMFKS-YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           A+ + +      G    LT  E + L  I + K++ EI  +LGI   TV  +++ I+ K 
Sbjct: 710 ASHYPNFMSSPSGPAEPLTKTEGQVLRLICQDKSNAEIGELLGIKLPTVKTHVSHILTKL 769

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A + A R ++V
Sbjct: 770 GVSRRAQAASEARRLHLV 787


>gi|182436316|ref|YP_001824035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464832|dbj|BAG19352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 354

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 65/280 (23%), Gaps = 73/280 (26%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +V+  ++    + +  L +    +  +                    G   +    
Sbjct: 87  DRLRVVVADDNPVVRAGLGVLLSGRADIQVVAEAAD---------------GREAYERTL 131

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +        +  +           +     L                 
Sbjct: 132 QHRPDVVLLDVRMPGVDGISALPHL-----------VGLAPVLMLTYSRESEIVHEALRL 180

Query: 126 MDNRYCSL-TFDVARIRIGLMLLFPKGR--------------IILRDRLW---------- 160
               Y     F   ++   +                       +                
Sbjct: 181 GAGGYLVHGEFTADQLVRAVRDTKDGRANFTATAADALLAHMRLGPATPRGPLPEGLGSA 240

Query: 161 -EIGLLAAYQANMFKSY---------------------DVHWGKDFELTGREVECLTWIS 198
                L  + A   +                            + + L+ REVE +  I+
Sbjct: 241 LTAAPLPTHPAPHPRETSESLSQLQPSVGQSSLSGGSTPAPNRQQYRLSSREVEVMDLIA 300

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G ++ +IA    IS  TV N+I  I  K  + +RS AIA
Sbjct: 301 SGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 340


>gi|31790496|emb|CAD56673.1| putative regulatory protein [Citrobacter freundii]
          Length = 216

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDEQRVVSGLQGVLRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|83952296|ref|ZP_00961028.1| putative nitrate/nitrite response regulator protein [Roseovarius
           nubinhibens ISM]
 gi|83837302|gb|EAP76599.1| putative nitrate/nitrite response regulator protein [Roseovarius
           nubinhibens ISM]
          Length = 232

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 108 LFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
              P    + +            Y  +  ++ R    L LL      + R+      L+ 
Sbjct: 94  RDVPAARQVADAAEADGLGAQLGYLPMNLEIDRWVSVLRLLLCGESYMPRE------LIE 147

Query: 167 AYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                   +      + F+ LT RE E L+  ++G  +  IA  LG+S +TV  ++  ++
Sbjct: 148 QAAPAPEPAKPAMPDRLFDRLTDREFEVLSCAAQGNQNKIIADKLGLSVHTVKLHMHHVI 207

Query: 226 RKTATKTRSGAIA 238
            K     R+ A  
Sbjct: 208 AKLGVHNRTEATI 220


>gi|124266090|ref|YP_001020094.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258865|gb|ABM93859.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 933

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 76/282 (26%), Gaps = 47/282 (16%)

Query: 10  IVLNREDEQR-----TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I ++R  E R        V     R    +    L     W     AL          L 
Sbjct: 653 IAISRMHEARGRSDEAVAVLDELERIGHTSPWQRLVAVSEWERVRRALAGGEIERAVALA 712

Query: 65  RWDLFQEQKLDSIVSS------DWPFDLVRCMALSEKDKYYNVLQRPTELF--------- 109
                  +                 +  +R +A++  D      +   E           
Sbjct: 713 TRIAPDSRDDAPHWIHLAEDVEGSGYGWIR-LAIARHDHADAAQRIARERARQTGRVYRD 771

Query: 110 --CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
               V  TL +         +R       + R    +  L  +G  +  + L E      
Sbjct: 772 IKLSVLETLLQQRMGARNAAHRCLRKALQLGRRGRYVRCLLDEGDGV-IELLREAYQNLL 830

Query: 168 YQANMFKSYDVHWGKDF-----------------------ELTGREVECLTWISEGKTSD 204
                         +D+                        L+ RE E L ++ +G T+ 
Sbjct: 831 RGHEPGGGTGTDPDRDYIELLLEASGTDLGRQAAGNALTEALSEREKEMLRFLLDGTTNR 890

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S NTV  ++ +I  K     R  AI  A    ++
Sbjct: 891 EIAGRLFVSENTVKFHLKNIYSKLGVGNRLQAINTARALRLI 932


>gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911]
 gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911]
          Length = 74

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|261218338|ref|ZP_05932619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320813|ref|ZP_05960010.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923427|gb|EEX89995.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293503|gb|EEX96999.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 157

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 8/123 (6%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                 + + S +  +  I   +  +         D   +               +    
Sbjct: 37  ALELGASGFISKSASMETIGEAVGAVLAGDIWTPDDIDLD--------HPKDPEIESPIA 88

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +   LT ++   LT ++EG  + +IA  LG+S  TV  +++++++K    +R+ A+    
Sbjct: 89  RLRTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLS 148

Query: 242 RNN 244
           R  
Sbjct: 149 RIG 151


>gi|118590980|ref|ZP_01548380.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118436502|gb|EAV43143.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 217

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 77/244 (31%), Gaps = 33/244 (13%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            + Q+ + ++  +     S +     +  L+               +    +  G S   
Sbjct: 1   MKDQRYSAIIADDHAIVRSGLRDALEKPGLI--------EPEGINVLAEAGD--GLSAIA 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            VR        LD  +      +++  +      K   V+         +   L E    
Sbjct: 51  EVRRHRPDLLLLDVSMPLAGGVEVL--IEARRWSKETRVVVLTGISAVGLISDLIET--- 105

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                +   S   D A     L  +                    + +++F         
Sbjct: 106 ---GVDGLFSKASDNAEFYQKLPGILRGQ---------------RHISDVFLKILEETPA 147

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + L  I  G+++ EIA  LGIS  TV+ +  S+M+K    +    +A A++
Sbjct: 148 PPVLTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVPQLMAKALK 207

Query: 243 NNIV 246
             ++
Sbjct: 208 EGMI 211


>gi|333020553|gb|EGK39813.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-227]
          Length = 190

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 79  NGVFYAMEDQERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 131

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 132 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184


>gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 491

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 75/233 (32%), Gaps = 9/233 (3%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    L     LL                 A  + +G +   L+   + +   
Sbjct: 264 RQSEERFAKAFRLSPVPTLLC----SADKQQLIDANEAFLDSLGYTAQELIGKTVAEIDF 319

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
                 +   FD +              ++   +   P+   L  +             L
Sbjct: 320 FADRGVAAQVFDAL----EKSGRIEALDVKLRKKGDDPLDCMLQADTVSLLDTPCYLLVL 375

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVE 192
                R R  L L+     ++     +   L+         +        F  LT RE +
Sbjct: 376 MDITERKRSELELVEAIETVMQDASWFSQTLIEKLANAKRINTGRLPDASFTDLTRRERD 435

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  I EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 436 VLALICEGLADKEIAARLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488


>gi|323165527|gb|EFZ51314.1| putative csgAB operon transcriptional regulatory protein [Shigella
           sonnei 53G]
          Length = 142

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 31  NGVFYAMEDQERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 83

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 84  HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 136


>gi|320534770|ref|ZP_08035192.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133012|gb|EFW25538.1| putative nitrate/nitrite response regulator protein NarL
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 223

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 5/217 (2%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     +  +    G    +     +  +Q +D ++      
Sbjct: 10  RVLIVDDDPLIRTTFAEQLDSQRAITVVAAASGGRQAI--SLLMTGQQPVDVVLLDSDMP 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D+          + +  +         VF          A   N + +       +   L
Sbjct: 68  DMDGAQTARAIYERFPRMPIVMF---TVFSRDEMLTDALAEGVNGFITKDESTENVAAAL 124

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           +       ++       +      +     +     G   EL  R  +  T + EG T+ 
Sbjct: 125 LRASRGEPVMSLRPTKMLVDAYQSEQKRATAEARIQGLVNELPPRLQDIYTCLLEGLTNR 184

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            IA  LGIS NTV  Y++ ++ +    +R+  IA A+
Sbjct: 185 RIARRLGISENTVRIYVSEVLHRLGHTSRTELIAAAL 221


>gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 204

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 29/227 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
                      + LA ++ L+  +    ++       G       R        LD  + 
Sbjct: 7   VLLAEDQSMVREALAALLGLEEDIEVVAQVAR-----GDEVLPAARAHSVDVALLDIEMP 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                +    +           L     +    F       +      + +       A+
Sbjct: 62  GATGIEAAALLHAE--------LPAVKLVILTTFGRPGYLRSAMESGADAFLVKDAPAAQ 113

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R+I                               LT RE E L   S+
Sbjct: 114 LAEAVRKVLTGERVIDPTLAAA----------------ALAEGANPLTDREREVLRAASD 157

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A     +
Sbjct: 158 GSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVAREKGWL 204


>gi|168789970|ref|ZP_02814977.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
 gi|189370464|gb|EDU88880.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli O157:H7 str. EC869]
          Length = 240

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYAMEDQERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
 gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea
           phototrophica DFL-43]
          Length = 260

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 9/220 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC--MALS 93
           +  +   +     +  L +      F L+R     +      +        +    + L 
Sbjct: 40  VGKIANRIDGYRLLKDLAQEYSFDDFALLRLPQSLKSANFRSIFDLHSLSEIELEMLDLE 99

Query: 94  EKDKYYNVLQRPTELFCPVFHTLP--ENITPPAGMDNRY-----CSLTFDVARIRIGLML 146
                  VL+       P    L   + I    G+   Y      +       +    + 
Sbjct: 100 GGCSAEPVLEHLMHWAVPYELRLTSNDAIDLAKGLLRHYGINVCVAFNLPSLTLTRYAIA 159

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            F +           + L A    +    + ++     E   R+   L+  SEG TS +I
Sbjct: 160 FFARKDTPENRNTGALMLDALACFDRLNMHLLNADNSDEFDARDAAILSLTSEGLTSQQI 219

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           AV L IS +TVN  +AS++R+     R   IA A+R  ++
Sbjct: 220 AVELKISEHTVNANVASMIRRLGVLNRPQLIATAIRKGLI 259


>gi|254440333|ref|ZP_05053827.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198255779|gb|EDY80093.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 220

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 25/222 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D+L + +  + +                +   + + D +    LD  +   
Sbjct: 5   IADDHDLLRDMLVQFLEKEGSFQTV-----AVGTFDEAAERIEKDDPYDLVLLDYNMPGM 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D ++        +                 T              +   +     + 
Sbjct: 60  NGLDGLKAAIALGGGQ--------RVALISGEATKQIAEVALEAGAAGFVPKSLPAKSLV 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    D +  +                      +LT RE++ L  ++EGK
Sbjct: 112 NAIKFMAMGEQYAPIDFMTAV------------EQTPTNPLADKLTERELQMLKGLTEGK 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           ++ EIA  L I   TV  ++ ++ RK     R+ A       
Sbjct: 160 SNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAALIGREA 201


>gi|254424867|ref|ZP_05038585.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
 gi|196192356|gb|EDX87320.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           PCC 7335]
          Length = 412

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S      K+  L+ RE E +  +++G    EI+  L IS  TV  +  +++ K   +TR+
Sbjct: 341 SSPQPLSKESPLSAREQEVIMLLAQGLRDREISKQLFISERTVKFHTRNMLGKLGVRTRT 400

Query: 235 GAIAYAVRNNIV 246
            A+  A +   +
Sbjct: 401 QAVFRATKQGWL 412


>gi|86356190|ref|YP_468082.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86280292|gb|ABC89355.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 215

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q+  I++  +       +       +    ++     V+      A             
Sbjct: 1   MQEQTIIIADDHPLFRDALRQAVIGMEGCQSIVEAGDFVAARTAAGA------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F  +  +                 +                
Sbjct: 48  -HPDADLMLLDLAMPGVSGFSGLMALRAE--------FASLPIIIVSATDDATTIRRALE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR  +  +         +   +                    +  
Sbjct: 99  LGASGFISKSSGIEDIRRSIQTVLAGDI-ATPESYRDGQ-------EQDPDVADLIHRLH 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   LT ++EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+ 
Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAVI 204


>gi|327190884|gb|EGE57942.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 215

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q+  I++  +       +       +    ++                    A+     
Sbjct: 1   MQEQTIIIADDHPLFRDALRQAVIGMEGRQSIVEAGD--------------FAAARTAAG 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F  +  +                 +                
Sbjct: 47  AHPDADLMLLDLAMPGVSGFSGLMALRAE--------FASLPIIIVSASDDATTIRRALE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR  +  +         +   +                    +  
Sbjct: 99  LGASGFISKSSGIEDIRRSIQTVLAGDI-ATPESYRDGQ-------EQDPDVADLIHRLH 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   LT ++EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+ 
Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVI 204


>gi|289165996|ref|YP_003456134.1| Transcriptional regulator, LuxR family with an autoinducer-binding
           domain [Legionella longbeachae NSW150]
 gi|288859169|emb|CBJ13099.1| Transcriptional regulator, LuxR family with an autoinducer-binding
           domain [Legionella longbeachae NSW150]
          Length = 248

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 60/200 (30%), Gaps = 19/200 (9%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
            F           KL    ++       +             L+   +   P+F  + E 
Sbjct: 35  AFTYYNQHTKTGSKLVYEWATTPLDAWHKYYLQEGYADIDRTLEATEQSLLPIFWDVKEQ 94

Query: 120 ITPP--------------AGMDNRYCSLTFDVARIRIGLMLLFP----KGRIILRDRLWE 161
           +                  G+D   C          + L+L         +         
Sbjct: 95  LRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGEFVILVLHQRINEHGLKNWENHVDTW 154

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G+L  Y   +    +        LT RE ECL   +EG   + IA +L IS+ TVN ++
Sbjct: 155 LGILHTYFHFLRLLLNEKKIGVVPLTKREQECLRLTAEGFRLELIAQLLKISKRTVNFHL 214

Query: 222 ASIMRKTATKTRSGAIAYAV 241
            +  +K     +      A+
Sbjct: 215 QNANKKLGVTNKY-LAIMAL 233


>gi|270159175|ref|ZP_06187831.1| LuxR family transcriptional regulator [Legionella longbeachae
           D-4968]
 gi|269987514|gb|EEZ93769.1| LuxR family transcriptional regulator [Legionella longbeachae
           D-4968]
          Length = 247

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 60/200 (30%), Gaps = 19/200 (9%)

Query: 60  HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPEN 119
            F           KL    ++       +             L+   +   P+F  + E 
Sbjct: 34  AFTYYNQHTKTGSKLVYEWATTPLDAWHKYYLQEGYADIDRTLEATEQSLLPIFWDVKEQ 93

Query: 120 ITPP--------------AGMDNRYCSLTFDVARIRIGLMLLFP----KGRIILRDRLWE 161
           +                  G+D   C          + L+L         +         
Sbjct: 94  LRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGEFVILVLHQRINEHGLKNWENHVDTW 153

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +G+L  Y   +    +        LT RE ECL   +EG   + IA +L IS+ TVN ++
Sbjct: 154 LGILHTYFHFLRLLLNEKKIGVVPLTKREQECLRLTAEGFRLELIAQLLKISKRTVNFHL 213

Query: 222 ASIMRKTATKTRSGAIAYAV 241
            +  +K     +      A+
Sbjct: 214 QNANKKLGVTNKY-LAIMAL 232


>gi|190410128|ref|YP_001965652.1| probable transcription activator TraR [Sinorhizobium meliloti]
 gi|125631158|gb|ABN47159.1| probable transcription activator TraR [Sinorhizobium meliloti SM11]
          Length = 237

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 20/225 (8%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                  +    +  L +    S +   +    +       V S+   D ++     + D
Sbjct: 18  AIAHDDATVKAALEGLADRFEFSGYAYTKLLPGE-----FCVISNLHPDWLKRKRKFDLD 72

Query: 97  KYYNVLQRPTELFCPVFHTLPENI-----------TPPAGMDNRYCSLTFDVARIRIGLM 145
           +   VL+R  +       +  E                  + +               L 
Sbjct: 73  RRNPVLRRAQQSRRAFVWSSQEENLSEEDQSFFGCAAKFEIRSGITIPIAISNGAISALS 132

Query: 146 LLFPKGRIILRDRLWEIGL--LAAYQANMFKS--YDVHWGKDFELTGREVECLTWISEGK 201
            + PK  +  ++ +  I             +         + F LT +E     W+S GK
Sbjct: 133 FVSPKPVLTAQEEIDPIAASSAVGQLHARIEQLKVAPSIQEPFYLTPKEGTYTRWLSLGK 192

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T ++ A I  +  NTV   +A   R+      +  +A A+R  +V
Sbjct: 193 TVEDTADIEHVKYNTVRIALAEARRRYDLCNNTQLVALAIRRGLV 237


>gi|126740186|ref|ZP_01755875.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
 gi|126718641|gb|EBA15354.1| DNA-binding response regulator, LuxR family protein [Roseobacter
           sp. SK209-2-6]
          Length = 215

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 75/239 (31%), Gaps = 40/239 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           +N   + ++I+L   +    S +S +  R    + +        +   +  +        
Sbjct: 2   VNPGSRPIDIMLADSNPLVLSAMSEIFERDPRFSLVATSATAEGFLGIVMRV-------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                    Q   +D  +       L+  +   E      V+    +   P         
Sbjct: 54  -------PVQVGIIDWNLPVLGAAKLIEVLREHENAPRL-VVYGDADGDAPRL------- 98

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +   + +   +    + +     +     + ++                  
Sbjct: 99  -AMQAGAAGFAPRSGEAEGLLETCLDVAAGKMVFPFIDVRKMQ----------------Q 141

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                L+ +E   L  +++G ++ E++  L IS NTV  ++++I  K + K R+ AIAY
Sbjct: 142 DPIHSLSRKERAILESLAKGMSNRELSKALQISTNTVKFHLSNIYEKLSVKNRAQAIAY 200


>gi|301029752|ref|ZP_07192806.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|299877440|gb|EFI85651.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1]
 gi|332342581|gb|AEE55915.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 190

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 109 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 168

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 169 FKKIAVKNRTQAVSWA 184


>gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 201

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 58/208 (27%), Gaps = 23/208 (11%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
            +        +      V  +H           +  D ++       +     L      
Sbjct: 15  AETAELIGEALLEHGFAVTVAHDGEAGLAALLREVPDLVLCDVGMPGMTGFELLERIGTL 74

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                    +F          +       + Y +   D   +   +              
Sbjct: 75  APRFAEIPFVFLTAMAQRESELKGRRLGADDYVTKPVDFEILVSIIETRL---------- 124

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                           +          L+ REVE L W + GKTS EIA ILG+S+ TV+
Sbjct: 125 -------------ARSARPRPPAPAVPLSEREVEVLAWSARGKTSGEIATILGLSKRTVD 171

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I +  +K    TR  A+  A    I+
Sbjct: 172 FHIDNARQKLGVATRIEAVVKASSAGII 199


>gi|156744138|ref|YP_001434267.1| ATP-dependent transcription regulator LuxR [Roseiflexus
           castenholzii DSM 13941]
 gi|156235466|gb|ABU60249.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Roseiflexus castenholzii DSM 13941]
          Length = 309

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 14/214 (6%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM----ALSEKDKYYNV 101
              M+ L ++     +        Q       + +      +             +    
Sbjct: 96  AELMFRLGDWAAFEAYAQGYHPPKQPLFFPYRLETLLQIRYLARRKAWDESRRLMQEQAR 155

Query: 102 LQRPTELF-----CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR---- 152
           L R            +   L E     +    R  +   ++ R    + +   +G     
Sbjct: 156 LARAAGYLEYEMELHIVGALLEQAAGNSSNAIRMLARALEIGRAGGYVRVFLDEGEEMRT 215

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++ + R  +               D     +  LT RE++ L  ++EG ++ EIA  L +
Sbjct: 216 LLAQLRRDDFAASLLAAFGKPAHIDQSALIE-PLTEREMDVLKLVAEGLSNPEIAEKLYL 274

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  ++  I  K     R  A   A    ++
Sbjct: 275 SVGTVKTHVKHIYGKLGVDDRVTAAGKARELGLI 308


>gi|90418016|ref|ZP_01225928.1| two component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337688|gb|EAS51339.1| two component response regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 250

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 31/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+        + + +L      +  +            + A         + L+  D
Sbjct: 1   MKLVVADGHALFRAGLRYLLQELADVVEVHEAATADELWQLLSA-------GSYDLILVD 53

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                        +               K    + R                       
Sbjct: 54  HLLGGLEHGSEIGNIRRRTGGAPVAVVSGKDEPAMIR----------------AALDDGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   L L+   G  +    L  +           ++ +    +   LT
Sbjct: 98  AGFIPKDSSPRLMIQALNLILAGGFYLPPTILSLLP--------RVRAGERPDPQRVSLT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            R+ E    +++G ++ +IA  LG+S   V  ++A ++R    + R+ A+  A     
Sbjct: 150 ARQAEVWNHLAKGASNKQIARSLGLSEGAVKAHVAGLLRLLGARNRTEALVRAGAVGW 207


>gi|78185167|ref|YP_377602.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78169461|gb|ABB26558.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 227

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVE 192
                G++ +   G+    D L  I  +A   +   K      G         L+ RE E
Sbjct: 115 EANVDGIIFVHSIGQSADGDFLKSIRAIANGSSYYPKEVRTMAGYVKSIALAGLSDRESE 174

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L  + +G ++ E+A +L +S  T+ +++++++ K   K R+ A+  A+R  +
Sbjct: 175 VLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAGM 227


>gi|56476411|ref|YP_158000.1| LuxR family transcriptional regulator [Aromatoleum aromaticum EbN1]
 gi|56312454|emb|CAI07099.1| putative LuxR-family transcriptional regulator [Aromatoleum
           aromaticum EbN1]
          Length = 207

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 9/190 (4%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
               E                   LD I  +    D    +A     +            
Sbjct: 16  ERWLEAFPDGMCTDAGDLPSTALPLDVIWVATAHADWQTLLA--RFHRTLPQSPLVVVTM 73

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
            P      E I         YC        +R   ++    G  +  + +  +   AA  
Sbjct: 74  VP---EADEAIVALEHGARGYCHALAVPGLLREVELVARHGGLWVGAELMARVVEAAARA 130

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                   +       L+ RE E     + G ++ EIA  LGI+  TV  ++ +I  K  
Sbjct: 131 LAAPGRGPLPAN----LSARESEVARETAAGLSNKEIASKLGITERTVKAHLGAIFDKLG 186

Query: 230 TKTRSGAIAY 239
            + R   +  
Sbjct: 187 VRDRLQLVLR 196


>gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 74

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0205]
          Length = 89

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 38/63 (60%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              +L+ RE+E +  +++G T+ EI   L IS+ TV+N+++++  KT  K R   + +A+
Sbjct: 10  SPMDLSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAM 69

Query: 242 RNN 244
            + 
Sbjct: 70  DHG 72


>gi|220925456|ref|YP_002500758.1| LuxR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gi|219950063|gb|ACL60455.1| transcriptional regulator, LuxR family [Methylobacterium nodulans
           ORS 2060]
          Length = 238

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRY---CSLTFDVARIRIGLMLLFPKGRIILRDRL 159
           +   +    +     +       ++        +      +   L ++     ++    +
Sbjct: 78  RMAPKARIAILAEPSDGTALRELLEMGVQACLDVLMQPEALVKSLNVIMQGNIVMPMGVV 137

Query: 160 WEIG-----LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             +G       A Y      +     G +  LT REVE L +++ G ++  IA  L I+ 
Sbjct: 138 PHLGRSGTKAPATYLLPTPPAAARGLGANETLTEREVEILAYLAAGLSNKLIARRLSIAE 197

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            TV  ++ SI+RKT  + R+ A  +  R+ I
Sbjct: 198 ATVKIHVKSILRKTGLQNRTQAAIWTHRHGI 228


>gi|183601348|ref|ZP_02962718.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683404|ref|YP_002469787.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191152|ref|YP_002968546.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196558|ref|YP_002970113.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218954|gb|EDT89595.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621054|gb|ACL29211.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249544|gb|ACS46484.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251112|gb|ACS48051.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178899|gb|ADC86145.1| Daunorubicin resistance two-component response regulator
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794142|gb|ADG33677.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 218

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 20/188 (10%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           T + GA+  +           +D  +      +    +                 L    
Sbjct: 31  TAHDGAAAVVAYARQKPDVLLIDVQMPGTDGLEASERI-----------------LVLTT 73

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL--LAAYQA 170
           F                Y     DVA +   +  +     ++  D L  + +   +    
Sbjct: 74  FADPEYIRRAIELGTKGYLIK-QDVASVIPAVQAVMAGQVVLGADVLRNLPMHDASGNVE 132

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               S      +   LT RE + +  ++E   + EIA  L +S  TV N I+ I+ KT  
Sbjct: 133 EPKASPLPDDPRFAHLTDREHDIVELVAEELDNREIAAKLFLSEGTVRNRISGILAKTHI 192

Query: 231 KTRSGAIA 238
             R+    
Sbjct: 193 SNRTKLAI 200


>gi|162452238|ref|YP_001614605.1| putative two-component system response regulator [Sorangium
           cellulosum 'So ce 56']
 gi|161162820|emb|CAN94125.1| putative two-component system response regulator [Sorangium
           cellulosum 'So ce 56']
          Length = 212

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 14/190 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G            Q   ++  ++     DL+R +           +     +   +    
Sbjct: 35  GQEALRAQEIHRCQVAVIELGLADRSGVDLIRELK---------GIAELRVIVLSMHRDE 85

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + Y S    +A +   L  +      +  D    +           +  
Sbjct: 86  FRVAEAMRAGADGYLSKQSRLADLLEALRTVVRGRTAVSPDVSAAMVRALQR-----RDA 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE + L  ++ G ++ E+A  L IS  TV  + A +  K AT + +  
Sbjct: 141 AARGDMVAALSDRERQVLRLLAMGLSAKEVAAQLSISVKTVETHRARLCAKVATHSVADL 200

Query: 237 IAYAVRNNIV 246
              AVR  +V
Sbjct: 201 TRLAVRAGLV 210


>gi|16764498|ref|NP_460113.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62179660|ref|YP_216077.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614644|ref|YP_001588609.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167553080|ref|ZP_02346830.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167993996|ref|ZP_02575088.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234058|ref|ZP_02659116.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237217|ref|ZP_02662275.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168822574|ref|ZP_02834574.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194469443|ref|ZP_03075427.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194737293|ref|YP_002114139.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249466|ref|YP_002146903.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262382|ref|ZP_03162456.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243879|ref|YP_002215996.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389724|ref|ZP_03216335.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930806|ref|ZP_03221679.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|207857350|ref|YP_002244001.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584353|ref|YP_002638151.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238911038|ref|ZP_04654875.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|6014730|sp|O54294|CSGD_SALTY RecName: Full=Probable csgAB operon transcriptional regulatory
           protein
 gi|2739237|emb|CAA05315.1| CsgD protein [Salmonella typhimurium]
 gi|16419657|gb|AAL20072.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127293|gb|AAX64996.1| putative transcriptional regulator (LuxR/UhpA family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364008|gb|ABX67776.1| hypothetical protein SPAB_02394 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455807|gb|EDX44646.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194712795|gb|ACF92016.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197213169|gb|ACH50566.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240637|gb|EDY23257.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289893|gb|EDY29254.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197938395|gb|ACH75728.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602169|gb|EDZ00715.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320265|gb|EDZ05469.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205322437|gb|EDZ10276.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205328037|gb|EDZ14801.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331948|gb|EDZ18712.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341044|gb|EDZ27808.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206709153|emb|CAR33486.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224468880|gb|ACN46710.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246354|emb|CBG24163.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992909|gb|ACY87794.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157683|emb|CBW17175.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912129|dbj|BAJ36103.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086418|emb|CBY96191.1| Transcriptional regulatory protein uhpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223757|gb|EFX48820.1| Transcriptional regulator CsgD for 2nd curli operon [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616512|gb|EFY13421.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619764|gb|EFY16639.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622541|gb|EFY19386.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629692|gb|EFY26467.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632588|gb|EFY29334.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636917|gb|EFY33620.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641545|gb|EFY38183.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644846|gb|EFY41380.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649699|gb|EFY46129.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653990|gb|EFY50313.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658522|gb|EFY54784.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663380|gb|EFY59582.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670114|gb|EFY66254.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674821|gb|EFY70912.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676708|gb|EFY72775.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682630|gb|EFY78649.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686312|gb|EFY82294.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322714130|gb|EFZ05701.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323129411|gb|ADX16841.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195731|gb|EFZ80907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199879|gb|EFZ84968.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203139|gb|EFZ88169.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209142|gb|EFZ94079.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209647|gb|EFZ94576.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217898|gb|EGA02613.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222185|gb|EGA06569.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224956|gb|EGA09214.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229700|gb|EGA13823.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232925|gb|EGA17021.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240660|gb|EGA24702.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242973|gb|EGA26994.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247665|gb|EGA31610.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252666|gb|EGA36504.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255707|gb|EGA39459.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261744|gb|EGA45316.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266904|gb|EGA50389.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269946|gb|EGA53395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623745|gb|EGE30090.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628199|gb|EGE34542.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332988033|gb|AEF07016.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 216

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D   +  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDQEHVVSGLQGILRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|23010418|ref|ZP_00051114.1| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Magnetospirillum
           magnetotacticum MS-1]
          Length = 243

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   + LA  I L    +         + + A+  +L +        LD  
Sbjct: 28  LRLLVVDDHPLFREALASAIALAFPKAELHE----ADGIRAACDILGQNPAIDLTLLDLS 83

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     FD +  +           +             + E +         +     D 
Sbjct: 84  MQGVTGFDGLDTIRARF-----PRVPILIVSGLTEPRIMQEAV---RHGAAGFVPKAVDK 135

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +      +  D                        +   LT +++  L  I
Sbjct: 136 ATLTRAISEVLGGALFMPPDLAPAP------VPARSADKAPVAERVARLTPQQMRVLAMI 189

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +GK + +IA  L +  +TV  +++ I+RK    +R+  + 
Sbjct: 190 RQGKLNKQIAHELQVGDSTVKAHVSEILRKLEVISRTQIVI 230


>gi|56413870|ref|YP_150945.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168244733|ref|ZP_02669665.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168264076|ref|ZP_02686049.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467083|ref|ZP_02700925.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444624|ref|YP_002040395.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194450147|ref|YP_002045140.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197362793|ref|YP_002142430.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56128127|gb|AAV77633.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|154269337|gb|ABS72185.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden]
 gi|194403287|gb|ACF63509.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194408451|gb|ACF68670.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195630363|gb|EDX48989.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197094270|emb|CAR59776.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205336437|gb|EDZ23201.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205347328|gb|EDZ33959.1| transcriptional regulator CsgD [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 216

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D   +  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDQEHVVSGLQGILRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|77460195|ref|YP_349702.1| two component LuxR family transcriptional regulator [Pseudomonas
           fluorescens Pf0-1]
 gi|77384198|gb|ABA75711.1| putative LuxR family response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 208

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                      CP     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNA----MSSPFKTLVLTAQCP----T 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L  +        +  +  
Sbjct: 87  LFGIRCMQSGASGYVCKQEDLSELVSAIKAVLSGYNYFPSQALNPVR------HDDVRYA 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K      RE+  L   ++G+T+ EIA  + +S  TV+ Y   +M+K   K+    
Sbjct: 141 ELELFKSVN--DRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLKAKSLVEL 198

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 199 IEMAKRNALV 208


>gi|21244205|ref|NP_643787.1| LuxR/UhpA family transcriptional regulator [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78049164|ref|YP_365339.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325926600|ref|ZP_08187914.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21109844|gb|AAM38323.1| transcriptional regulator luxR/uhpA family [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78037594|emb|CAJ25339.1| two-component system response regulator, LuxR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325542952|gb|EGD14401.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 212

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 1   MADLTILVADDHPLFRAAVIHVLQQTLPQANVVEASSAATLSAMLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSTPAESIGTAVASVLEGGTWFPP-----------MTAERSEADAQLASKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 202


>gi|114563476|ref|YP_750989.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334769|gb|ABI72151.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 220

 Score = 90.0 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            +++ +NI++  +     + +    + +    +    D   +    +             
Sbjct: 1   MKLENLNIIIADDHPLFRNALRLALSNAFEKTQWFEADSAEALQGVLDQ----------- 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             +   F    LD  +           + L        V+             +      
Sbjct: 50  --KETPFDLILLDLQMPGSHG--YSTLIHLRTHYPDIPVV------VISAHEDINTISRA 99

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +   +  +  +   L  +      + +                    D    +
Sbjct: 100 IHYGSSGFIPKSASMEVLAEALNAVLYGDIWLPKGT--------QIVPVSDDPTDKMANR 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT ++   L   +EG  + +IA   G+S  T+  +  +I RK   + R+ A+  A++
Sbjct: 152 LSDLTPQQYRVLQMFAEGLLNKQIAYDFGVSEATIKAHATAIFRKLGVRNRTQAV-IALQ 210

Query: 243 N 243
            
Sbjct: 211 Q 211


>gi|241662724|ref|YP_002981084.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|240864751|gb|ACS62412.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
          Length = 219

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N VL        + ++HL      +  + P +                           
Sbjct: 1   MNTVLIEAHPLVRTGIAHLLRTLKGVTVVEPDEGMFDAIET------------------- 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 L   +      +L   +       +   +    E   P        +       
Sbjct: 42  NADAGLLVIGLPLPHLDEL-SAIGEIMHRPHARHVVVLAESESPDIIRTLMQM-----GL 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         I   L L+   G+ I    L     L                K   +T
Sbjct: 96  SGYTLKHSPGEVIAASLELVLVGGQYIPASALLPESRLDGAPNPALAGDPQTDPKLLGIT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  +S G     I+ +L IS  T   +I+++ R+   ++R+ A+  A +  
Sbjct: 156 PRQYEILVLLSRGHPVKTISRMLNISEATAKAHISTLYRRLKVRSRTEAVYVANQRG 212


>gi|194367128|ref|YP_002029738.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349932|gb|ACF53055.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 216

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 72/235 (30%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  I++  +     S V     +S  LA++  +                  A    L 
Sbjct: 1   MSEYTILIADDHPLLRSAVVQSLRQSLPLAQVREVASAD--------------ALAEALD 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F  +  + +        V+   +    P      +      
Sbjct: 47  AHPDVDLVLLDLTMPGAHGFSAL--LHVRGSHPDIPVV-ILSSNDHPRVIRRAQQF---- 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++  +   +  
Sbjct: 100 -GAAGFIPKSAPAETIGEAVRAVLDGGLWFPA-----------MAAERSEADALLASRLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAYTLGLAENTVKVHVTAILKKLECHSRTQAAVL 202


>gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551]
 gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 201

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 58/208 (27%), Gaps = 23/208 (11%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
            +        +      V  +H           +  D ++       +     L      
Sbjct: 15  AETAELIGEALLEHGFAVTVAHDGEAGLAALLREVPDLVLCDVGMPGMTGFELLERIGTL 74

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
                    +F          +       + Y +   D   +   +              
Sbjct: 75  APRFAEIPFVFLTAMAQRESELKGRRLGADDYITKPVDFEILVSIIETRL---------- 124

Query: 159 LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
                           +          L+ REVE L W + GKTS EIA ILG+S+ TV+
Sbjct: 125 -------------ARSARPRPPAPAVPLSEREVEVLAWSARGKTSGEIATILGLSKRTVD 171

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +I +  +K    TR  A+  A    I+
Sbjct: 172 FHIDNARQKLGVATRIEAVVKASSAGII 199


>gi|241763752|ref|ZP_04761799.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241366971|gb|EER61367.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 208

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R                         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAETFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLIERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    FD   +   +  +                  A      ++      
Sbjct: 96  NTMKKGALDFIQKPFDEEELVGLVERMLDH---------------AREAFAGYQQAASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLSKLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|239990355|ref|ZP_04711019.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447364|ref|ZP_06586754.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350311|gb|EFE77215.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 315

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 64/276 (23%), Gaps = 69/276 (25%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ +V+  ++    + +  L +    +  +                    G   +    
Sbjct: 52  ERLRVVVADDNPVVRAGLGVLLSGRADIQVVAEAAD---------------GREAYEKTL 96

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +        +             VL                       
Sbjct: 97  EHRPDVVLLDVRMPGVDGISAL-----PHLVGIAPVL------MLTYSRESEIVHEALRL 145

Query: 126 MDNRYCSL-TFDVARIRIGLMLLFPKGR-------------------------------- 152
               Y     F   ++   +                                        
Sbjct: 146 GAGGYLVHGEFTANQLVQAVRDTKDGRANFTATAADALLAHMRHGTPPQRGPLPEGLGSA 205

Query: 153 ---IILRDRLWE----IGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKT 202
                      E    +  L         S       +   + L+ REVE +  I+ G +
Sbjct: 206 LATAPPPAHTAEPSESLSQLQPVVGESSVSGGTVPTPNRQQYGLSSREVEVMDLIASGMS 265

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + +IA    IS  TV N+I  I  K  + TRS AIA
Sbjct: 266 NQQIAATCFISEKTVKNHINRIFTKLHSATRSEAIA 301


>gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
 gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44]
 gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4]
 gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442]
          Length = 74

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|255039459|ref|YP_003090080.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
 gi|254952215|gb|ACT96915.1| two component transcriptional regulator, LuxR family [Dyadobacter
           fermentans DSM 18053]
          Length = 212

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 17/189 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                +D  ++     +L+     +   +   ++         V HT 
Sbjct: 35  GKEFIAERAAHPPDILVMDLALNGMNSIELLDICRSTLPSEMKIIVLSAVTDAQTVKHT- 93

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      N + S +  +      +  ++   + I R     +        ++F   
Sbjct: 94  ------IRRGANSFLSKSTALEEFLESIFQVYKGKQYIGRSIRESL------VNSVFSEE 141

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +V       L+ RE + L  +  G T  EIA  L +S +TV  Y  S+M K   +  +  
Sbjct: 142 EVVL----HLSPREKQVLRKVCSGHTIKEIAYELKLSTHTVQYYHRSVMDKLKVRRTTDL 197

Query: 237 IAYAVRNNI 245
           I YA+++ +
Sbjct: 198 IVYAMQHGL 206


>gi|170682157|ref|YP_001744145.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           SMS-3-5]
 gi|191172365|ref|ZP_03033906.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312968892|ref|ZP_07783099.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|170519875|gb|ACB18053.1| transcriptional regulator CsgD [Escherichia coli SMS-3-5]
 gi|190907249|gb|EDV66847.1| transcriptional regulator CsgD [Escherichia coli F11]
 gi|312286294|gb|EFR14207.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 2362-75]
 gi|320178529|gb|EFW53494.1| Transcriptional regulator CsgD for 2nd curli operon [Shigella
           boydii ATCC 9905]
 gi|323174844|gb|EFZ60459.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli LT-68]
 gi|323185839|gb|EFZ71200.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1357]
 gi|333005785|gb|EGK25303.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-218]
          Length = 190

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 79  NGVFYAMEDQERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 131

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 132 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 184


>gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 82

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D        LT RE + L W + GK+S EI  IL    +TVN ++ +I+RK    TR  A
Sbjct: 10  DSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKFDVSTRVAA 69

Query: 237 IAYAVRNNIV 246
           +  A+R  ++
Sbjct: 70  VIKAIRYGML 79


>gi|332521837|ref|ZP_08398286.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332042509|gb|EGI78711.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 453

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                  +  + + E+      Q +  K  +        L+ RE E L  IS GKT+ EI
Sbjct: 357 AIRADIDLHIEEIKELTATVHKQKSNKKEIETTQ----LLSFRETEILQLISLGKTNKEI 412

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSG 235
           A+ L IS NTV  ++ +I  K   K+R  
Sbjct: 413 ALELHISENTVKYHVKNIYTKLNIKSRKE 441


>gi|282862547|ref|ZP_06271609.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282562886|gb|EFB68426.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 33/242 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             Q+ IVL  +       V         +  +     +                +  L  
Sbjct: 6   AGQLRIVLIDDHALLREVVCEALNVEPDMVVVGVAASSS---------------TGILHC 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +  +   + VR +  +              L   +            
Sbjct: 51  DIKQPDVVLLDGNIPDESLTETVRAIRSAS--------PHARVLIVSMPDDPALVRQLLD 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                  + +     +   +  +      I          +                   
Sbjct: 103 CGVRGCLNKSASRTDLVSSIRAVCADNIRI----------VLHVSVEALTHIASTADCPD 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E LT +S+  ++ +I+  L I+  TV  ++ +I  K   ++R  A+  AV   
Sbjct: 153 VLTRREMEILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIG 212

Query: 245 IV 246
           ++
Sbjct: 213 LI 214


>gi|148977193|ref|ZP_01813820.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
 gi|145963475|gb|EDK28738.1| transcriptional regulator, LuxR family protein [Vibrionales
           bacterium SWAT-3]
          Length = 209

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 63/231 (27%), Gaps = 33/231 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + +      +   A ++  D   +    +                 D 
Sbjct: 6   TIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLKK--------------EDE 51

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +        +    L  +     ++                     +    
Sbjct: 52  PDLLLLDLKMPGANGMSGL--FQLRAEYPDLPIV------VISASEDASVVTQVKSHGAF 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + D+  +   L  +           +               +      K   LT 
Sbjct: 104 GFIPKSSDMRELVSALNQVLNGDPFFPEGLITN-----------NAACSDLAEKIATLTP 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 153 QQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 203


>gi|194365838|ref|YP_002028448.1| two component LuxR family transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348642|gb|ACF51765.1| two component transcriptional regulator, LuxR family
           [Stenotrophomonas maltophilia R551-3]
          Length = 224

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 60/224 (26%), Gaps = 14/224 (6%)

Query: 23  VSHLPTRSDLLA-RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
           +  L    D    R             +         S   ++         LD  +  +
Sbjct: 1   MPTLLIADDHPLFRAALHRAAEEAVADLQISEADSLDSVLEVLEHQQIDLMLLDLHMPGN 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  +   +             +                     Y   +  +  ++
Sbjct: 61  HGLAGLATIRALQ--------PGLAIIIVSANEEPQVIRRAVDLGAAGYLPKSSGLNELQ 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    R I       +  +A +             +   L+  + + L+ ++EG 
Sbjct: 113 SALQSVLEGERWIPALLREPVARVAPF-----SKDADLAARLASLSAHQYKVLSLVAEGL 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +IA  LG+   TV  ++  IM +   + R+ AI       +
Sbjct: 168 LNKQIADRLGVQLRTVKAHMTRIMERLGVRNRAQAIRVLHEMGL 211


>gi|296102843|ref|YP_003612989.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057302|gb|ADF62040.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 211

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 32/216 (14%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPF 84
             +  +D   ++   +       G   F              D      L+  +     F
Sbjct: 3   EVIYVIDDDDAYRSFVVQFLTAAGYQTFDFSNAEEFLSSPIVDHPSCLILELNLPRMNGF 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           D++  +          VL        P        +         + +   +  ++   +
Sbjct: 63  DVMDALKARG--CAIPVLILTKSGSIPA------CVRAMKAGARDFLTKPVEPEQLLRVV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +         ++     L   YQA               LT RE +       G  + 
Sbjct: 115 NEVLIDATNHFLEQQRLFELCKNYQA---------------LTRREKQIFELAINGLQNK 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +IA  LGI+  TV  +   +M K   +T +  +  A
Sbjct: 160 QIASELGITEITVKVHRRRVMDKMQVRTLADLVHAA 195


>gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
 gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9]
          Length = 97

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   ATSESQSSVTLSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVA 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|227112572|ref|ZP_03826228.1| virulence regulator [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 204

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 12/112 (10%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                  T  V  I   L  +      +  D               +   +   GK   L
Sbjct: 97  VMGVILKTSPVDSIAQALKTVSMGMVCLPDD---------GVIYEGWSVDNSVKGK---L 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           + R+ E L  I+ G ++ +I+  L IS  TV +++ SI R+   + R+ A  
Sbjct: 145 SERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196


>gi|192360065|ref|YP_001981449.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
 gi|190686230|gb|ACE83908.1| two-component transcriptional regulator, LuxR family [Cellvibrio
           japonicus Ueda107]
          Length = 312

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 27/223 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +++      +L+ARM           +     +  G   F +                
Sbjct: 112 VDYITKPINTHELIARMRVHLANARIAQQARRALDSAGQFLFTIDLEGQLLWATPQVYEL 171

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                     +   E      + Q+  E                               +
Sbjct: 172 LADAE-----ITTPELTLADPIHQQLRE------W---------------LSHKPESGRQ 205

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + + L        ++      E  LL  +Q    +       + F +TGRE + L WI+ 
Sbjct: 206 LPLNLNSQGLGIEMLNLVDKRE-YLLRLHQRAQPEDETQSLRQQFAVTGREADVLRWIAN 264

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           GKT+ EI  IL +S  TVN ++  I +K   + R+ A A A++
Sbjct: 265 GKTNREIGQILDMSPRTVNKHLEQIFKKLGVENRTSAAAAAIK 307


>gi|187478369|ref|YP_786393.1| virulence factors transcription regulator [Bordetella avium 197N]
 gi|115422955|emb|CAJ49484.1| virulence factors transcription regulator [Bordetella avium 197N]
          Length = 207

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 19/216 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ +D        + AL E  G          L    + +E   + ++       L    
Sbjct: 4   LLIIDDHPVIRFALKALMEKEGFEVVGETDNGLDGISMAREMLPNLVILDIGIPKLDGLE 63

Query: 91  ALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            L+        +         P                  + S   ++  +      +  
Sbjct: 64  VLTRLQGLCLPMHVLILTGQQPA----LFARRCLNAGAAGFVSKHGNLQEVVDAAKAVVA 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                 +  L +I                       L+ RE+  L  +++G T+ +IA  
Sbjct: 120 GYTYFPKTTLTDI---------RGVESQDDAMMISSLSNRELAVLQLLAQGLTNKDIADS 170

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  T++ Y   +++K    T    I  A RNN+
Sbjct: 171 MFLSNKTISTYKTRLLQKLNATTLVELIDMAKRNNL 206


>gi|289662552|ref|ZP_06484133.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 212

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 1   MADLTILVADDHPLFRAAVIHVLQQTLPHANVVEASSAATLSAMLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSTPAESIGTAVASVLEGGTWFPP-----------MTAERSEADAQLASKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 202


>gi|237725811|ref|ZP_04556292.1| transcriptional regulator [Bacteroides sp. D4]
 gi|265753165|ref|ZP_06088734.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|229435619|gb|EEO45696.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|263236351|gb|EEZ21846.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 256

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 35/77 (45%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             MF    V       LTGRE+E L  I  G  S EIA  L IS +TV+ +  +++RK  
Sbjct: 179 GEMFSPGVVIMNPVVSLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLG 238

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI     + ++
Sbjct: 239 VHNSLEAIRLGQESGLL 255


>gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
 gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905]
          Length = 377

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--TGREVECLTWISEGKTSDEI 206
            +     +  L  +  +                K+ EL  T RE   L  ++EG  + +I
Sbjct: 277 GEEFDCTKVELLLLEEVGKRLGLFLSRKGEKVEKNTELHLTERESMILGLLAEGYDNKKI 336

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +L +S +TV +Y++S+M K   K R+  +A A R  ++
Sbjct: 337 GGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 376


>gi|90994534|ref|YP_537024.1| hypothetical chloroplast protein 29 [Porphyra yezoensis]
 gi|122244619|sp|Q1XDE4|YCF29_PORYE RecName: Full=Probable transcriptional regulator ycf29
 gi|90819098|dbj|BAE92467.1| unnamed protein product [Porphyra yezoensis]
          Length = 222

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 18/183 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L     F     D ++     ++L+  +  ++      V+      F       
Sbjct: 35  GLEALNLAYQYNFDLIISDIMMPLVNGYELLAKLKKNKALSKIPVI------FLTAKGMT 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + I         Y S  FD   +   +  L      I RD L E  L          + 
Sbjct: 89  KDRIKGYDMGCYGYLSKPFDPNELLSIINNL------IARDVLKEASL------QNSATS 136

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE   L  + +G T+ EI+ IL  S   V  Y++ ++ KT  K R+  
Sbjct: 137 NQQLNHKIRLTPREKSILDLVVDGLTNKEISTILNTSVRNVEKYVSRLLHKTNMKNRTLL 196

Query: 237 IAY 239
           + Y
Sbjct: 197 VKY 199


>gi|330995249|ref|ZP_08319160.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
 gi|329575966|gb|EGG57486.1| transcriptional regulator, LuxR family [Paraprevotella xylaniphila
           YIT 11841]
          Length = 209

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 10/99 (10%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDF----------ELTGREVECLTWISEGKTSDEIA 207
            +  +  L  Y     +       K             L+ RE+E L  I  G T+ EIA
Sbjct: 106 MVRALLQLQQYAHAHGRHLPQGMRKPISGTTASTDPNGLSQREIEVLILIVRGLTNKEIA 165

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L I   TV ++  +IM K   ++ SG   YAV N  +
Sbjct: 166 DHLCIGTTTVISHRKNIMEKLNVRSVSGLTIYAVMNGYI 204


>gi|325002840|ref|ZP_08123952.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 212

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  + E   + +  +   +  +  +                    G +        
Sbjct: 3   IRVVVADDQEAVRTGLVLILGSAPDIEVVAEAGD---------------GLAAVRAAAEH 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  R +                 L    F          A   
Sbjct: 48  RPDVVLMDIRMPGIDGIEATRRILAG---------ASAQVLVLTTFDLDELVDGALAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   + D  R+  G+  +     ++  +    +  ++ Y                 LT
Sbjct: 99  AGFLLKSVDAPRLTDGVRAVARGDGVLAPEITRRV--ISRYAG---APRPGSVPGLGALT 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE + L  +  G ++ E++  L IS  T   +++ ++ K   ++R+ A   A    +V
Sbjct: 154 ARERDVLAGLGRGLSNAELSAELVISEGTTKTHVSRVLAKLGLRSRTQAAIAAQDAGLV 212


>gi|187921497|ref|YP_001890529.1| two component LuxR family transcriptional regulator [Burkholderia
           phytofirmans PsJN]
 gi|187719935|gb|ACD21158.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 202

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 66/228 (28%), Gaps = 29/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +   P     +A ++  D  +             G     +V         +D  +
Sbjct: 3   RVVIIDDHPIIRGTIASVLRADPELELVGE-----SGDGEDGLAMVLTKHPDLVIIDLDL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  ++R +  +        +        P                N Y S   +++
Sbjct: 58  PRLDGLTMIRRIRANSIK-----ISILVLSAKPEHIMAGYARN---AGANGYVSKGREIS 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +         D                            L+ REVE L  ++
Sbjct: 110 ELVTALKTVLFGYDCFPADN----------------GDVAPASGLSTLSAREVEVLQHLA 153

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ +IA  L +S  TV+ Y + I  K    + +G I +A  + +V
Sbjct: 154 RGVSNRDIAGRLSLSDKTVSTYKSRIQEKLGLTSLAGLIEFATLHRLV 201


>gi|113868997|ref|YP_727486.1| response regulator [Ralstonia eutropha H16]
 gi|113527773|emb|CAJ94118.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 219

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 12/218 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSI 77
            ++    L    D    +     T      M        G++   L      Q  + D +
Sbjct: 1   MSNAAPTLLVVDDHPMALSG--TTAFLAEVMPDVAVHAAGSAREALTSL--QQGLRPDIV 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +   W  D     A+        V+     +F     T        A     +     D 
Sbjct: 57  LLDIWLNDGTGFDAMQSFKT---VIPGARFIFMSAEATPEIVGRARALSACGFVGKHLDA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +         D      L    Q+            +  LT R+   L  +
Sbjct: 114 NAFTAAVRKVLAGDTSFPTDE----ALNGRAQSFGPAHGIPVTPAELGLTPRQGSVLALV 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            EG  +  IA  LG++ NTV  ++++I+++   +TR  
Sbjct: 170 LEGLPNKVIARRLGLTENTVKEHVSAILQRLGVRTRMQ 207


>gi|110634798|ref|YP_675006.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285782|gb|ABG63841.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1]
          Length = 554

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 10/224 (4%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            LA+        +    + A  + +  + FL    ++      D   + +   +L     
Sbjct: 332 RLAQKRTEAAAAAIKRALGATEDRLLRAKFLPACVEIMLASG-DIASAGEACRELEESAD 390

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL--TFDVARIRIGLMLLFP 149
                    +                  +         +  +   +  AR R  + L   
Sbjct: 391 RFRTVVLQAMAGHAAGAVALSADDHQNALKALRAAFELWLQVEAPYPAARTRELMALACR 450

Query: 150 K-----GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGKT 202
                 G  +      E         +M +   +   ++    LT RE+E L  ++ GK 
Sbjct: 451 GMGDEEGASLELAAAREAFQALGAAPDMARIDRLALPRNTRKGLTRRELEVLRLVTAGKP 510

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  IA  L +S  T++ ++++I  K    +R+ A A+A R  +V
Sbjct: 511 NKVIAAELFLSEKTIDRHLSNIFDKLGVSSRTAAAAWAFRQGLV 554


>gi|332306646|ref|YP_004434497.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173975|gb|AEE23229.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 213

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 57/175 (32%), Gaps = 14/175 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LL++    +   LD  +  +     +  +                        +      
Sbjct: 42  LLIQHQDVELLFLDVNMPGNDGLTGLTMIRSH--------FPDVLVAIVSGDESPAMVRK 93

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y   +  +  I   +  L    + +  +   ++  +                
Sbjct: 94  AMDFGACGYIPKSTPLPVISDAVQQLLDGEQWLPSELFEQVQKI------EDSQEQAFAA 147

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           K  +LT  +++ L  +++G  + +IA  LG+S +T+  ++++++ K     R+ A
Sbjct: 148 KLAQLTPHQLKVLQLMADGLLNKQIAYELGVSESTIKQHVSAVLHKLGFNNRTQA 202


>gi|171912872|ref|ZP_02928342.1| two component transcriptional regulator, LuxR family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 220

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 51/216 (23%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSDWPFDLVRC 89
           +D        +  L    G   F     +               LD  +     F L   
Sbjct: 13  VDDDELVRRSLQRLFLSAGHDAFTFSSAESYLQQVLPTRPACLVLDLQMPGLNGFALQDE 72

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +      +   ++        P                  +    F   R+   +     
Sbjct: 73  LTARGSHEG--IVFISGHGDVPA------CARALKKGAVDFLMKPFGDDRLLASV----- 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               +          L+                   LT RE+E L  +  G  + +IA  
Sbjct: 120 -EEALAYSERTLKQALSRQGVQELL---------ATLTPREMEVLRGVIAGYLNKQIAAD 169

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LG S  T+  +   +M K    + +  +       +
Sbjct: 170 LGTSEKTIKVHRGRVMEKLEVHSVAELVRMCAMIGL 205


>gi|241666813|ref|YP_002984897.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862270|gb|ACS59935.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 210

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 23/198 (11%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +       G      +         LD  +       + R +          V+      
Sbjct: 27  LRVEAYESGDQFLSRLSACEPGCVLLDLQMPGQSGLQIQRRLCELAPLF--PVV------ 78

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           F      +  ++         +   +   A +   +        +I  +R          
Sbjct: 79  FLTGEGDIKASVEAMKAGAKDFLEKSSTAATLMGAI-----DRALIQYERQRA------- 126

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
           + +  +           L+ RE E   ++  G+ + +IA  LGIS  TV  +   +M K 
Sbjct: 127 EHDRLQGQRSLV---AGLSPREAEVFRFLIRGRLNKQIAHALGISERTVKVHRHQVMEKL 183

Query: 229 ATKTRSGAIAYAVRNNIV 246
             ++ + A++ A    ++
Sbjct: 184 GVRSLAEAVSIAANIGLI 201


>gi|113971949|ref|YP_735742.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|117922250|ref|YP_871442.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|113886633|gb|ABI40685.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
 gi|117614582|gb|ABK50036.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 198

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 62/222 (27%), Gaps = 25/222 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D       L   ++            G     L++   F     D  +      
Sbjct: 2   HILLAEDQAMVRGALAALLTLAGGFTITQASNGDEALNLLKQQHFDLLLTDIEMPGRTGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L   +                 +    F                +         +   +
Sbjct: 62  ELATWLKEQHS--------HTKVVVITTFGRAGYIKRAIEAGVGGFLLKDAPSETLVHAI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    RII      E+ ++A              G    L  +E   L + SEGK++ 
Sbjct: 114 QQVIAGKRIIDP----ELAIMAI-------------GDVDPLNDKERRALRFASEGKSTA 156

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA +L I+  TV NY++  + K     R  A   A +   +
Sbjct: 157 EIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198


>gi|254236841|ref|ZP_04930164.1| hypothetical protein PACG_02861 [Pseudomonas aeruginosa C3719]
 gi|254242636|ref|ZP_04935958.1| hypothetical protein PA2G_03395 [Pseudomonas aeruginosa 2192]
 gi|126168772|gb|EAZ54283.1| hypothetical protein PACG_02861 [Pseudomonas aeruginosa C3719]
 gi|126196014|gb|EAZ60077.1| hypothetical protein PA2G_03395 [Pseudomonas aeruginosa 2192]
          Length = 209

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 34/239 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWD 67
            +++  +       V  L  +                   +  + E   G     LVR  
Sbjct: 3   TVLIVDDHPVIRLAVRVLLEKH-----------------GLQVVAETDNGVDAIQLVREH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++  +   E      VL   ++                    
Sbjct: 46  EPDVVILDIGIPKLDGLTVISRIKSLEL--RSQVLVLTSQSAEAF------CKRCIQVGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   D+  +   L  +              +G                      L+
Sbjct: 98  RGFVNKEEDLNNLINALNAVIAGYTFFPSLTFDTLGT--------PPERISESELIGLLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G ++  I   L +S  TV+ Y   +++K    +      +A RN+++
Sbjct: 150 DREMIVLQHLAMGYSNKAIGEKLFLSNKTVSTYKTRLLQKLGLGSLVDLAEFAKRNSLI 208


>gi|317403552|gb|EFV84049.1| hypothetical protein HMPREF0005_03096 [Achromobacter xylosoxidans
           C54]
          Length = 238

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           ++      + +  + E V  +  +L            SI   + P +L+        +  
Sbjct: 38  IEDYALLRVAIQHVLERVRNAEDILAISPAHLVNMPGSI---NRPVELLVIGCSGVAEPD 94

Query: 99  YNVLQRPTELFCPVFHTLPEN-------ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
             +L +   LF P       +                 Y         +   + L+   G
Sbjct: 95  IGLLSQAMALFMPRLVLALYSVLDQSVMAACARAGVAGYLPKASSPDALAAAVSLVLAGG 154

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
               +     +   A       +          ELT R+ E L  + +GKT  EI   +G
Sbjct: 155 ECYPQPTARPLAT-AHAPLQELR----------ELTQRQEEILQLLVQGKTMREIGQQVG 203

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV ++  ++  K   + ++ A   AV+  +V
Sbjct: 204 ISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 238


>gi|205353119|ref|YP_002226920.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272900|emb|CAR37830.1| csg operon transcriptional regulator protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
          Length = 216

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D   +  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDQEHVVSGLQGILRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|254236520|ref|ZP_04929843.1| hypothetical protein PACG_02517 [Pseudomonas aeruginosa C3719]
 gi|126168451|gb|EAZ53962.1| hypothetical protein PACG_02517 [Pseudomonas aeruginosa C3719]
          Length = 217

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 31/231 (13%)

Query: 10  IVLNREDEQ-RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           I++  +    R++    L        R++          R+    ++             
Sbjct: 6   ILIADDHPLFRSALHQALTLGLGPDVRLVEAASIAELEARLNEKADW------------- 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +   + F  +  +    +     V+    +                    +
Sbjct: 53  -DLVLLDLNMPGAYGFSGLVLL--RGQYPQVPVVMISAQE------EAAVVQRSREFGAS 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +  +  ++  +  +                L    +A               LT 
Sbjct: 104 GFIPKSSPLETLQQAVRAVLDGDTWWPPQDAAAEALSEEAKAASAGLAS--------LTP 155

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT + EG  + +IA  L +S  TV  ++ +I RK   +TR+ A   
Sbjct: 156 QQFRVLTMVCEGVLNKQIAYDLNVSEATVKAHVTAIFRKLNVRTRTQAALL 206


>gi|209518445|ref|ZP_03267268.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209501166|gb|EEA01199.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 239

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 28/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
               ++ ++L  +     S + H  +    +  +     +                    
Sbjct: 10  MAASEIRVILADDHPVMLSGIEHEISEVRTIQLVGTARNSTEL---------------IA 54

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L+          D  + +    D +     S   + Y  ++        +          
Sbjct: 55  LLSSKQCDVLVSDYAMPAGEYGDGIALF--SLIKRRYPDIKIV---VLTMLDNPAVIRAL 109

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                    S +  V  +   +  +   G+                            G 
Sbjct: 110 VTQGVTCIVSKSDAVTHLIPAIHAVHHGGKYYSPTI--------NEIVQSIDWNRRGRGS 161

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E +   + G T +EIA  L  S+ T++   +  M K   +       YA+ 
Sbjct: 162 SDVLSQRESEVVRLFASGLTVNEIAERLSRSKKTISTQKSKAMEKLGIEREIDLYRYALE 221

Query: 243 NNIV 246
           N +V
Sbjct: 222 NGMV 225


>gi|163801555|ref|ZP_02195453.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio sp. AND4]
 gi|159174472|gb|EDP59274.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio sp. AND4]
          Length = 199

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 40/236 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + + N ++  +       +  L    ++   +     +      +               
Sbjct: 2   MNKFNCLIFDDHPLVCIAIKSLVESLEIADEVTTATSSKDALKILKE------------- 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  ++    +D  + +             +   +F     +   +     
Sbjct: 49  --GNIGLLILDVNLADCDGYDFYKRIKSHGF--------KGKSIFFSAETSHMYSQMAFR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   + +   ++  +  +                    Y    FK          
Sbjct: 99  SGADGYVCKSENHDILKDAIEAVAKG-----------------YSFFKFKPTVEESSSTP 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            L+ RE   +  + +GK++ +IA IL IS  TV+ Y   ++ K   K        A
Sbjct: 142 SLSNRENSVMKLLLQGKSNRDIADILSISDKTVSTYKRRLLEKFNVKNIVELSKIA 197


>gi|320532002|ref|ZP_08032895.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135766|gb|EFW27821.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 203

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 63/229 (27%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ L+  +    ++ +     G     +          +D  
Sbjct: 2   IRVMLADDQAMVRGALAALLTLESDIQVVAQVGS-----GDDVLPVALEHRPDVVLMDVD 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +           L     L    F              + +       
Sbjct: 57  MPGTDGLSATASLLER--------LPATRVLIVTTFGRPGFLRRAVQSGAHGFVVKDAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R++      +  +                  D  LT RE E L   
Sbjct: 109 TDLAESVRRVHAGLRVVDPALAADSLVFG----------------DSPLTARETEVLQAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T  E+A  + +S  T  N+++  M KT   TR+ A+  A +   +
Sbjct: 153 ADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQKGWI 201


>gi|329947507|ref|ZP_08294704.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328524625|gb|EGF51689.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 230

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 65/241 (26%), Gaps = 38/241 (15%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L+ ++  +  +             GA    L R        +D  
Sbjct: 2   IRLVIADDQAVVRAGLSVILGAEEDIEVVGEA-----ADGAEAITLARELRPDVVCMDIR 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +         R +                 L    F    + +         +     D 
Sbjct: 57  MPGTDGIAATRAIVSDPGLDVD-------VLILTTFDVDDDVLASLEAGAAGFLLKGADE 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEI----------GLLAAY-QANMFKSYDVHWGK---- 182
           A +   +  +      + +     I          G LA +   +  +            
Sbjct: 110 ATLLGAVRSVAVGEGTLDQRVTRRILHELSRRGSPGTLARHDIGSQHRDVGSAADAGGAS 169

Query: 183 -----------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                      D  LT RE+E L  +++G ++ E+A  L +   T+  ++  +M+KT ++
Sbjct: 170 EQASFAGAASVDVTLTSRELEVLRLLAQGMSNGEMAAHLYVEPTTIKYHLTGLMQKTGSR 229

Query: 232 T 232
            
Sbjct: 230 D 230


>gi|325068498|ref|ZP_08127171.1| two component transcriptional regulator, LuxR family protein
           [Actinomyces oris K20]
          Length = 205

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 36/229 (15%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  + E     ++ +  R+D L  +           R                      
Sbjct: 1   MIVDDHEIVRRGIAEIIDRADGLDVVAEAGSRAEAVRRAE---------------LVRPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      +L++ +  S        + +   +    F          A     Y
Sbjct: 46  VILVDLQLPDGTGIELMQELRDS--------VPQALPIVLTSFDDDEALAEALAAGARAY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              T   A I   +  +     ++    +              +    H     +LT  E
Sbjct: 98  LLKTVHGAEISDVVRAVASGRVLLDERTVT-------------RRRADHDDPTADLTNAE 144

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 145 RKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 193


>gi|311896508|dbj|BAJ28916.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 203

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 67/225 (29%), Gaps = 24/225 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ +    D       L   V+    +  +T    G         D      +D  +   
Sbjct: 1   MTSVLVCDDSPLAREALRRAVATVPGVDRVTTATNGEEVLRRWVADRSDLVLMDVRMPGL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + VR +  ++             +   V   L       A     Y       A +R
Sbjct: 61  GGVETVRRLLSAD--------PGARIIMLTVAEDLDGVALAVAAGARGYLHKDASRAELR 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +                             +S D+       LT RE++ L  +S G+
Sbjct: 113 ATVTQALADPTW-------------RLAPRRLRSPDMGAAP--TLTAREIQVLEGMSHGR 157

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EI   L +S +TV  +   + +K     R+ A+A   R  +V
Sbjct: 158 SNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202


>gi|257791938|ref|YP_003182544.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
 gi|257475835|gb|ACV56155.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243]
          Length = 258

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 68/241 (28%), Gaps = 31/241 (12%)

Query: 30  SDLLARMIPLDCTVSWTMR-MYALTEYVGAS--HFLLVRW-DLFQEQKLDSIVSSDWPFD 85
            DLL  +           R M    + V      F L    +  +    D +       +
Sbjct: 13  DDLLLALYGASDLADLRRRVMRGFKDLVPYDKGFFDLCDCSESGRFVFFDPVSVDMTDEE 72

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLP----ENITPPAGMDNRYCSLT------- 134
           L+      E   Y         +  PV +       + +   + +   +           
Sbjct: 73  LLSYYQKYEPSDY---TTWLFSVNDPVVYRDSTFVTDEMRKRSELYREWMIPMDTHFSMG 129

Query: 135 ---FDVARIRIGLMLLFPKGR-IILRDRLWEIGLLAAYQANMFKSYDVHWGKD------- 183
                   I   + L   +       +    + +L  + +           +        
Sbjct: 130 STQVGNGMIYGSITLFRNRASGDFTEEEEECLAVLNRHLSTCLAVAHPRGLRRDEGKPVV 189

Query: 184 --FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E    I+EG ++ +I + L IS NTV  ++  I +K     R   +A   
Sbjct: 190 GRTSLTAREQEIAALIAEGLSNQQIGLRLFISENTVKKHVKGIFQKMGVSNRHQLMAELY 249

Query: 242 R 242
           R
Sbjct: 250 R 250


>gi|254482414|ref|ZP_05095654.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037419|gb|EEB78086.1| transcriptional regulator, LuxR family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 209

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 7/181 (3%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G +   +             +             A  +             +        
Sbjct: 23  GRAAVRVADIGEATSGSRGIVWLDIAALAPAERSAEVQ----AAAAFGWPVVVMAATPGE 78

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            E           YC L     ++R   +++   G  +  + +     L+          
Sbjct: 79  SEAFQLLNQGAVGYCHLKAAPEQLREVALVVEHGGFWMPPELMQRFLALSTRVVPTKAPV 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   ELT RE+     ++ G ++ EI+  L IS  TV  ++++   K   + R   
Sbjct: 139 SPELN---ELTSRELMVAEQVARGASNREISQALSISERTVKAHLSAAFEKLGVRDRVQL 195

Query: 237 I 237
            
Sbjct: 196 A 196


>gi|145297176|ref|YP_001140017.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142849948|gb|ABO88269.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 207

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 64/234 (27%), Gaps = 33/234 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       V  L         +                    G     +V+   
Sbjct: 3   TVLIVDDHPAIRMAVKILLLAEGF--HICGEVDN--------------GIDALQIVKAST 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D++  +  S       ++    +    +     +         N
Sbjct: 47  PNIVVLDIGIPKLDGIDVINRIKKSN--SQSLIVVLSAQDGNHIMSRCFQ------AGAN 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   D+  +   +       R    + + E             S          L+ 
Sbjct: 99  GFISKMDDLMLLSSAIKACLDGKRYFPDEIISE---------GDQASNINSDDALLSLSD 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           RE+     + +G ++ EIA  + +S  T++ Y + +MRK         I  A R
Sbjct: 150 REMRVFLSLCKGCSNKEIANNMLLSEKTISTYKSRVMRKLQVNNMVELIDLAKR 203


>gi|83944309|ref|ZP_00956764.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
 gi|83953350|ref|ZP_00962072.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83842318|gb|EAP81486.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83844853|gb|EAP82735.1| DNA-binding response regulator, LuxR family protein [Sulfitobacter
           sp. EE-36]
          Length = 206

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 61/228 (26%), Gaps = 35/228 (15%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVG-ASHFLLVRWD----------LFQEQKLDSIVSS 80
           +  R++  D        +    +  G                      F    LD  +  
Sbjct: 1   MALRILIADDHDMVRETIAMFLDADGGTETVAASDLPEAMAKIEAEGPFDLVLLDYTMPG 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               + +  +  + ++K   V                      A     +   T     +
Sbjct: 61  MKGLEALPKVMKANEEK--PVGLISGTAT------RLIAEQALAMGAIGFLPKTLPAKSL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWIS 198
              +  +                       N     D     DFE  L+ RE + L  + 
Sbjct: 113 VNAVRFMAAGEIYAP--------------VNFMSGKDDPEETDFEKALSERERQVLRGLM 158

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E K++ EIA  L +   T+  ++ ++ RK   + R+ A   A     +
Sbjct: 159 EAKSNKEIARDLELQEVTIKLHVKTLCRKLDARNRTDAAMIARSAGFI 206


>gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
 gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis
           biprosthecum C19]
          Length = 247

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 15/242 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-KLDSI 77
           RT  ++     +  LA +            + +L + +   +F     DL       + +
Sbjct: 6   RTRLLAAREFATGELAELRARHPAYD-RAIIESLRKVIPFDYFFFSGVDLDNCHTGANMV 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-TLPENITPPAGMDNRYCSLTFD 136
           + SD P   +     S   +   +L   T     +    +PE +     +      L   
Sbjct: 65  LMSDMPEAGIAEYHASGLVRADPLLTLVTVERPDLSWFDVPEEVKARPEVRALVSLLDQH 124

Query: 137 VARIRIGLM-----------LLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-VHWGKDF 184
               R+                + +      D +  +   +              + +  
Sbjct: 125 HIPPRVIFSQWNSAGDPYGTAGYARTEPFSADEMAILSWFSRRIHKDLCEPVLNGFNQQI 184

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E  CL   S G TS+EI   + ++  TVN+Y+  I RK   + RS AIA A+R N
Sbjct: 185 GLTAGETTCLELASRGMTSEEIGAQMDLTTETVNSYMKLITRKLGARNRSQAIADALRLN 244

Query: 245 IV 246
           ++
Sbjct: 245 LI 246


>gi|255325648|ref|ZP_05366745.1| two-component system response regulator TcsR2 [Corynebacterium
           tuberculostearicum SK141]
 gi|255297258|gb|EET76578.1| two-component system response regulator TcsR2 [Corynebacterium
           tuberculostearicum SK141]
          Length = 202

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 41/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  L      ++ +      V                   LV   
Sbjct: 5   IRVLIAEDQSLVRGALVALLETEPDISVVAQCATGVEVAG---------------LVAKH 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D    +  +              L    F              
Sbjct: 50  SVDVALLDIEMPGKNGLDAAVELQGTG----------CRSLIVTTFGRGGYVKRALETGV 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +        ++   +  +    ++I      E   +                ++  L 
Sbjct: 100 SGFVVKDTPPEKLAEDIRRVHSGLKVIDPALAQETIFI----------------RENPLN 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E      +G ++ +IA  + +S  TV N I+S++ KTA   R  A   A     +
Sbjct: 144 AREQEVALLALKGSSTHQIARKIHLSNGTVRNIISSLIAKTAAGNRFEAATIAQTQGWI 202


>gi|325982862|ref|YP_004295264.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325532381|gb|ADZ27102.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 205

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 40/241 (16%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             + +  + +  +D            R  L+  +      V       A         F 
Sbjct: 1   MIMHEPTVFIVDDDAAV---------RDSLMLMIEQAGIRVQAFEHADAFLSAYHPDFF- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      +D  +      D +R        K          +F      +P ++  
Sbjct: 51  -------GCIIIDVKMPGM---DGLRLQEELTWRKIA-----LPVIFLTGHGDIPMSVRA 95

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
             G    + +      ++ + +   F + +  + D      +++                
Sbjct: 96  IKGGAVDFLTKPVIREKLLVCVRAAFAEAKKRISDIARNKEMMSCLI------------- 142

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LTGRE E +T   +G T+ EIA  LGIS  TV  + + IM+KT              
Sbjct: 143 --KLTGREREVMTLAVQGHTNKEIASCLGISHRTVEIHKSKIMQKTGASNLLDLARIVRE 200

Query: 243 N 243
           +
Sbjct: 201 S 201


>gi|150397182|ref|YP_001327649.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150028697|gb|ABR60814.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 226

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 64/227 (28%), Gaps = 19/227 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   ++   T  D L+R+I  +             + +       +  +      +D  +
Sbjct: 16  RIVVIADHQTDLDELSRIIGAEPEWHLIAACRTAADAIDT-----LSANPVDLVLVDLDL 70

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           +     +LVR  +         +L               E                   +
Sbjct: 71  TEMDDLELVRRFSREMPGLSCVILAAEM--------NDEELAEAMRNGVGGVVLKARAQS 122

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      +    +     + +              K   LT RE+E     +
Sbjct: 123 SLVDCIRAVVAGRTYLAGQSMNS---VVSRIRERDAERRAVLQK---LTPRELEISRLAA 176

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            G  S EIA  LGI+  TV  ++ S+  K    TR      A R  +
Sbjct: 177 SGLRSREIAARLGIAPGTVKLHLHSVYGKLNLTTRVELANLAQRLQL 223


>gi|239943663|ref|ZP_04695600.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 183

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 25/198 (12%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
              T   G         D      +D  +      + VR +  ++             + 
Sbjct: 9   RVTTAANGEEVLRRWGADRSDLILMDVRMPGLGGVETVRRLLSAD--------PGARIIM 60

Query: 110 CPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAY 168
             V   L       A     Y       A +R  +          +   RL    + AA 
Sbjct: 61  LTVAEDLDGVALAVAAGARGYLHKDASRAELRATVTQALADPTWRLAPRRLRSAEMGAA- 119

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT RE++ L  +S G+++ EI   L +S +TV  +   + +K 
Sbjct: 120 ---------------PTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKL 164

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+ A+A   R  +V
Sbjct: 165 GASDRAHAVALGFRWGLV 182


>gi|317057055|ref|YP_004105522.1| LuxR family two component transcriptional regulator [Ruminococcus
           albus 7]
 gi|315449324|gb|ADU22888.1| two component transcriptional regulator, LuxR family [Ruminococcus
           albus 7]
          Length = 211

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 21/176 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCM-ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            ++D I+      D    + A  +  K    ++       P +          +     +
Sbjct: 48  HEVDLILMDILMNDGSNGLEAAEKIKKLRPDIKIIAVTSMPEY---SWLEKAKSIGIESF 104

Query: 131 CSLTFDVARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                D   I   +   +  +          ++GL                    ELT R
Sbjct: 105 WYKEADEQTILEVMDRTMAGESVYPDSSPRVKLGLA----------------DSSELTER 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  ++ G T+ ++A  LGIS NTV +++ S++ KT  ++R+     A    I
Sbjct: 149 ELEILRIVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKARVLGI 204


>gi|297161023|gb|ADI10735.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 201

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 24/190 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LD  +      D    +           L     L    F   
Sbjct: 36  GDKIVPRALETRPDVALLDIELPGLSGLDAAAALRQE--------LPGCHVLILTTFGRP 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      + +      V  + + +  +    R+I                +   + 
Sbjct: 88  GYLRRAMEAGASGFLVKDGPVEELAVAVRRVLAGERVI----------------DPGLAA 131

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + LT   +G T  +IA  + +S  TV NY++S + KT T+ R  A
Sbjct: 132 AALSAGPNPLTPRERDVLTAAVDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEA 191

Query: 237 IAYAVRNNIV 246
           +  A +N  +
Sbjct: 192 VRAARQNGWL 201


>gi|253773935|ref|YP_003036766.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161147|ref|YP_003044255.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B str.
           REL606]
 gi|300928412|ref|ZP_07143945.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|242376846|emb|CAQ31561.1| CsgD transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253324979|gb|ACT29581.1| transcriptional regulator, LuxR family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973048|gb|ACT38719.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli B str. REL606]
 gi|253977262|gb|ACT42932.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BL21(DE3)]
 gi|300463575|gb|EFK27068.1| transcriptional regulator, LuxR family [Escherichia coli MS 187-1]
 gi|323962640|gb|EGB58218.1| luxR family protein regulatory protein [Escherichia coli H489]
 gi|323973370|gb|EGB68559.1| luxR family protein regulatory protein [Escherichia coli TA007]
          Length = 216

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESVLLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
 gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1]
          Length = 511

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 41/70 (58%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +  +L+ RE+  L  +++G ++ E A +L +S  TV +Y++S+M++   + R+ A
Sbjct: 441 DEKQPELVQLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVSSLMKRLHARNRTEA 500

Query: 237 IAYAVRNNIV 246
              A+R  ++
Sbjct: 501 AVKAMRLGLI 510


>gi|170720806|ref|YP_001748494.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169758809|gb|ACA72125.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 206

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++R  L     LD  +      +++                    L        
Sbjct: 35  GVDAMQMIRETLPDLVILDISIPKLDGLEVLSRFQTMALP--------LKVLILTAQSPA 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D++ +   +  +           +      A     +F+  
Sbjct: 87  LFAVRCMHSGAAGYVCKQEDLSELLSAIKAVLAGYNYFPSQAIHTGHETAGTDLTLFRQV 146

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K    T    
Sbjct: 147 N----------DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKKRLMQKLQVDTLVDL 196

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 197 IEMAKRNALV 206


>gi|318041781|ref|ZP_07973737.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 228

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 21/188 (11%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           S    ++ + ++       + +   F+L R     +      V+        PV +    
Sbjct: 60  SCLSYLQQEPYELLICTDFLENGNGFELARKARQCQPQLK--VVVLALGDAIPVEYAEAS 117

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +       +       D   +   +M +                          +S  +
Sbjct: 118 WLEAVVAEAD----FIEDQKPLEAAVMAVMGHHSYRSPS---------------LRSGQL 158

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +     LT RE E L  ++ G T  EIA  L +S  T   Y   +++      R  A+ 
Sbjct: 159 PYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVSEETARTYTKRLLKTLEVNNRVQAVL 218

Query: 239 YAVRNNIV 246
             +R  +V
Sbjct: 219 KGMRCGMV 226


>gi|251795472|ref|YP_003010203.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|304408019|ref|ZP_07389669.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|247543098|gb|ACT00117.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2]
 gi|304343038|gb|EFM08882.1| transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 74

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A
Sbjct: 3   GSDHKSKFLLTHREREVFELLVQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   ++  
Sbjct: 63  VVELIKLG 70


>gi|172064666|ref|YP_001812316.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171998151|gb|ACB69067.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 207

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 20/211 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +      +       +  +      F L+         +D  +      + +  +    +
Sbjct: 6   IAGTTNAIDLISVCGSANDL-----FALLATTRCDVALIDFAMHGAGQMEGLALLGYLRR 60

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                 +        PV        +          S   DV  I   +   +  G  + 
Sbjct: 61  TYPDVSVAVLLSNENPVIVH-----SILERGVASVVSEFDDVGHIVTAIHTCYGGGNYLS 115

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                 + L          +      +  +L+ RE+E +     G + + IA  L   + 
Sbjct: 116 PLIKRSLEL----------AKGEATNRVPKLSPREIEVIRLYLSGLSINAIAGRLNKGKQ 165

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV+    S M+K   K+    I  A   +++
Sbjct: 166 TVSAQKMSAMKKLGVKSDVELIRCATCLDLI 196


>gi|291166834|gb|EFE28880.1| nitrate/nitrite response regulator protein [Filifactor alocis ATCC
           35896]
          Length = 221

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 26/223 (11%)

Query: 22  FVSHLPTRSDLLARMIPL-DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
            +   P   + L  +I +                        ++         +D  +  
Sbjct: 4   VLDDHPIAREGLEAIIKMYKPQEDIVQAGTV------EEAISIMETKKPDMVFVDINLGK 57

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
           +  FD +  +   + +           L      +  + +   A   + Y      +  I
Sbjct: 58  ESGFDFLEWLHSKKSE--------VKVLMITSSSSESDFLHARALGVDAYLLKDAFIDDI 109

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              L ++   G+    D + ++G L+                   LT RE+E L ++++G
Sbjct: 110 VYSLKVIERGGKFYSSDLVDQMGQLSEE--EKLLE---------TLTKRELEVLFFLNQG 158

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++ +I   L +S  TV  +I++++ K   + R  A  ++ RN
Sbjct: 159 YSNAKIGEALFVSEGTVKKHISNLLGKLGLENRMEAGLFSSRN 201


>gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1003

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 17/183 (9%)

Query: 81   DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE---------NITPPAGMDNRYC 131
            D    L+  +    +      L+    L     +   E                   RY 
Sbjct: 821  DLALHLLHRLQARSEQTRRPGLKLSLLLSMARAYDRQERPDRALASLEEALSLAEPQRYM 880

Query: 132  SLTFDVARIRIGLMLLFPKGRIILRDR--------LWEIGLLAAYQANMFKSYDVHWGKD 183
                D       L+    +                L  +              +      
Sbjct: 881  RTFIDEGPQIASLLKRLRQSYQQSTSAAQSCSLGYLNRLLSAFHGTHAPQPVQENVISLT 940

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             +L+ RE E L  ++ G ++ EIA  L I  NTV  ++ +I  K  T  R+ AIA A   
Sbjct: 941  EQLSQREQEVLHLLASGHSNAEIAETLIIGLNTVKTHLKNIYGKLGTHNRTQAIAQARTL 1000

Query: 244  NIV 246
            +++
Sbjct: 1001 HLL 1003


>gi|170768176|ref|ZP_02902629.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
 gi|170122942|gb|EDS91873.1| transcriptional regulator CsgD [Escherichia albertii TW07627]
          Length = 216

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYAMEDEERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|94501729|ref|ZP_01308243.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Oceanobacter sp. RED65]
 gi|94426129|gb|EAT11123.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Oceanobacter sp. RED65]
          Length = 198

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 34/226 (15%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +       D L  +  +   +  T  + A       +H +L+         +D  +   
Sbjct: 6   IIDDHQVYLDGLELI--VQSHLEETFVLKAT--DYQTAHEILLAHPDIDLTLIDLSLGES 61

Query: 82  WPFD-LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              +       +                         +           +   + D A +
Sbjct: 62  SGLEVWKELKHIHGPIPVA---------ILSASEEDVDIARCKRLGALGFIKKSSDNAVL 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +         D                         + ELT R+ E L  +++G
Sbjct: 113 THAISKMLDGEPYFPYDL--------------------SNIPNIELTPRQREVLQLLAQG 152

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  I   L +S  TV  ++ +I       TR+  +  A + +++
Sbjct: 153 LPNKAICRELNMSEATVKTHLRTIFALLNVNTRTQCVNVAQQYSLI 198


>gi|325920589|ref|ZP_08182508.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325548936|gb|EGD19871.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 218

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 7   MADLTILVADDHPLFRAAVIHVLQQTLPQADVVEASSAATLSAMLRS------------- 53

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 54  -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 104

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 105 FGAAGFIPKSTPAESIGTAVASVLEGGTWFPP-----------MTAERSEADAQLASKLA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 154 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 208


>gi|313680133|ref|YP_004057872.1| two component LuxR family transcriptional regulator [Oceanithermus
           profundus DSM 14977]
 gi|313152848|gb|ADR36699.1| two component transcriptional regulator, LuxR family [Oceanithermus
           profundus DSM 14977]
          Length = 196

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 55/222 (24%), Gaps = 30/222 (13%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D     I L   +             G     LV     +   LD  +      
Sbjct: 2   RLLIADDHPLFRIGLRAALEKEGFSVVAEAGDGDEAVRLVETHQPEVVILDIRMPRMDGI 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +                 +    F          +   N Y S     A      
Sbjct: 62  EACAALRQKGYS--------GLVVMLTTFTEAAIQNKAASAGANAYYSKEVSPA------ 107

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                           E+           +           LT RE E L  ++ G T+ 
Sbjct: 108 ----------------ELARRILRLTQNPEDSSFTPPPVPSLTPREREVLDLLARGLTAR 151

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+  ILG+  +TV +Y+  +  K     R  A+  A R   +
Sbjct: 152 EMGDILGLKPDTVRDYLKRLYGKLDAGNRIEALEQARRLGFL 193


>gi|239628083|ref|ZP_04671114.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518229|gb|EEQ58095.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 268

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K  D    K + LT RE E +  I  G ++ +I   L IS NTV  +I ++ RK     R
Sbjct: 184 KETDKSRMKRYGLTEREEEIMELIISGISNQQIGEKLFISENTVKKHINNLYRKLDVVNR 243

Query: 234 SGA 236
           S  
Sbjct: 244 SQL 246


>gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
          Length = 304

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 7/169 (4%)

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           +        LV              +            +L             +      
Sbjct: 135 VALDAAGRHLVAVSQEGTVLWSTPQIHNLLAKTGAAETSLFRLGRALGE----WLDGPHS 190

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGL---LAAYQANMFKSYDVHWGKDFELTGREVEC 193
               R   ML   +   +    L  +G    L    A             FELT RE E 
Sbjct: 191 SGERRKSFMLGLSENLAVQLHPLGRVGPDENLFRVTAEDEAGQVQALQGSFELTQREAEV 250

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L WI++GK++ +I  ILG+S  TVN ++  I  K   + R+ A   A  
Sbjct: 251 LIWIAKGKSNKDIGEILGLSPRTVNKHLEQIFVKLGVENRASAAVRAAE 299



 Score = 36.8 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 28/122 (22%), Gaps = 6/122 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            T          D     +           +  L    G +   +          +D+++
Sbjct: 1   MTDDRRDTVLVVDDSPETLGFVTEALKKTGVAVLVATSGETALNICSKVTPDTILMDAVM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                F+  R +  +        LQ    +F          +         + +   DV 
Sbjct: 61  PGLDGFETCRQIKEN------PALQHVPVIFMTGLSETEHVVKALESGGVDFLTKPIDVD 114

Query: 139 RI 140
            +
Sbjct: 115 EL 116


>gi|311279363|ref|YP_003941594.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
 gi|308748558|gb|ADO48310.1| two component transcriptional regulator, LuxR family [Enterobacter
           cloacae SCF1]
          Length = 216

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            ++  I+L  +     + V  L + +  +  +                    G     L 
Sbjct: 4   QERATILLIDDHPMLRTGVKQLISMAPDIQVVGEASN---------------GEQGIELA 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +  +                 +   V +   + +T   
Sbjct: 49  EALDPDLILLDLNMPGMNGLETLDKLREKTLS--------GRVVVFSVSNHEEDVVTALK 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y     +   +   L        ++       +           ++      +D 
Sbjct: 101 RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATSDRDI 153

Query: 185 -ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  + 
Sbjct: 154 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQE 213

Query: 244 NI 245
            I
Sbjct: 214 RI 215


>gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium
           etli 8C-3]
          Length = 122

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK-DF 184
           +       T  V   R+       +   + +  + E+ ++  +  + +     +      
Sbjct: 1   IPAGVAMPTIAVDGRRLVFWFCG-ERAALGQSEVNELAIIILHALDAYNIVRRNEESAHN 59

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E + W ++GKTS EI  IL +S +TVN Y+ + ++K     R+  +A A+R  
Sbjct: 60  ALSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLK 119

Query: 245 IV 246
           ++
Sbjct: 120 LI 121


>gi|239918216|ref|YP_002957774.1| RNA polymerase sigma factor, sigma-70 family [Micrococcus luteus
           NCTC 2665]
 gi|239839423|gb|ACS31220.1| RNA polymerase sigma factor, sigma-70 family [Micrococcus luteus
           NCTC 2665]
          Length = 232

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 57/229 (24%), Gaps = 14/229 (6%)

Query: 31  DLLARMIPLDCTVSWTMRMYAL------TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           D   R   +    +                 VG +  +        +   D ++      
Sbjct: 3   DPAPRTAVVVDNHAIFRSGLRADLDPDRLAIVGEAGDVDEAVRAVLDLAPDVVLLDVHLP 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                      ++          L   V     + +         Y + T   A +    
Sbjct: 63  GGAGGGGAEVAERVLARRPAQRFLALSVSDAAEDVVAVIRAGARGYITKTASGAEVADAA 122

Query: 145 MLLFPKGRIILRDRLWEI--------GLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           + +     +        +               A               L+ RE E +  
Sbjct: 123 VRVADGDAVFSPRLAGFVLDAFRGTAPASPPVPAAATSGAAAPDEDLDRLSAREREVMRL 182

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+ G T  E  V L IS  TV  +++S++RK     R     +A R   
Sbjct: 183 IARGYTYREAGVELFISDRTVETHVSSVLRKLQLSNRHELTRWAARRGY 231


>gi|34978677|gb|AAQ83580.1| BH2133-like protein [Bacillus firmus]
          Length = 204

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ +N+++  +       +  +    D +              ++ +L            
Sbjct: 1   MELINVLIADDQTLMREGLKTIIDLEDDMNVTGLAKNGKEVLDQIPSLL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      + ++ +          +      L    F      I    
Sbjct: 50  ----PHVILMDIQMPMMNGIECLKVVKR--------IYPHINVLMLTTFEDDEYIIESLV 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-LLAAY--QANMFKSYDVHWG 181
           G  N +     +  ++   +        +I      ++   L+ Y     +    +    
Sbjct: 98  GGANGFLLKDLNYDQLIYSIRQSVDGQMLIPNSIAVKLAKQLSKYNELTEVDLQIEKLKK 157

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
           +    + RE +  + +++  T+ +I+  L I+  TV NYI+ I  K
Sbjct: 158 EGLHFSERERQIASLLAQRLTNKKISEKLYITEGTVKNYISEIYSK 203


>gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4]
          Length = 220

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 76/237 (32%), Gaps = 36/237 (15%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  +       +  L  +    +++   D   +                         
Sbjct: 6   IIIADDHPIFREGIFALVRQLLPHSKIASTDTLDAALEIAR-------------ANPFPP 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD     +     +R +            +  + +   +        T      N 
Sbjct: 53  SMFILDLFFEGNNIVSNLRALREE--------FRLASIVVVTMASDKALVDTVMNAGING 104

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +       I+  L  +     ++          +A+Y                 L+ R
Sbjct: 105 FINKAALPDEIKEILRAVREGDVVV--QVPVSTNAIASYA-------------SPALSQR 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +++ L  ++EG+T+ EIA+ILGIS  TV  ++++I R     TR+GA+   +   +V
Sbjct: 150 QLDVLHLLAEGRTNKEIAIILGISPFTVRIHVSAIFRALGVATRAGAVTKGIAMGLV 206


>gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum
           IMS101]
          Length = 87

 Score = 90.0 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 41/63 (65%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE++ +  +++G T+++IA  L IS+ TV+N+I++I+ KT+T  R   + +A+
Sbjct: 8   THTSLSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRVELVRWAL 67

Query: 242 RNN 244
           +  
Sbjct: 68  QWG 70


>gi|157146272|ref|YP_001453591.1| DNA-binding transcriptional regulator CsgD [Citrobacter koseri ATCC
           BAA-895]
 gi|157083477|gb|ABV13155.1| hypothetical protein CKO_02029 [Citrobacter koseri ATCC BAA-895]
          Length = 216

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDEERVVNGLQGILRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|89075340|ref|ZP_01161762.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium sp. SKA34]
 gi|89048889|gb|EAR54458.1| putative transcriptional regulator, LuxR family protein
           [Photobacterium sp. SKA34]
          Length = 209

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 33/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  IV+  +     + +      +   A ++  D   S    +                 
Sbjct: 4   QHTIVIADDHPLFRNALFQSVHMAISGANLLEADSLDSLFALLEK--------------E 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  + L ++      +                     +  
Sbjct: 50  PDVDLLLLDLKMPGANGMSGL--IQLRQQYPELPTV------VISASEEDKVIRQVHSHG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D+  +   L  +         D            A+  ++Y     K   L
Sbjct: 102 AFGFIPKSSDMRALISALNQVLDGEPFFPED-----------IADNNRAYRDLADKIATL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+    + ++
Sbjct: 151 TPQQYKVLGMLSDGLLNKQIAYELTVSEATIKAHMTAIFRKLEVKNRTQAVILLQQLDL 209


>gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L]
 gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus
           anthracis str. A2012]
 gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis
           KBAB4]
 gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W]
 gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187]
 gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264]
 gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842]
 gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055]
 gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B]
 gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum]
 gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94]
 gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI]
 gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579]
 gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames]
 gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne]
 gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L]
 gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam]
 gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis
           KBAB4]
 gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488]
 gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193]
 gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442]
 gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389]
 gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174]
 gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I]
 gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W]
 gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108]
 gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99]
 gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134]
 gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97]
 gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187]
 gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264]
 gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842]
 gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102]
 gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684]
 gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876]
 gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1]
 gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W]
 gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621]
 gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342]
 gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550]
 gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24]
 gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26]
 gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196]
 gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4]
 gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3]
 gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15]
 gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28]
 gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29]
 gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42]
 gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2]
 gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185]
 gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603]
 gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676]
 gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271]
 gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048]
 gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407]
 gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200]
 gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222]
 gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248]
 gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171]
 gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI]
 gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 74

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|330808384|ref|YP_004352846.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376492|gb|AEA67842.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 208

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 28/196 (14%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                    L        
Sbjct: 35  GVDAMQMVRECMPDLVILDISIPKLDGLEILSRFNAMTTP--------LKTLVLTAQSPT 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L                 
Sbjct: 87  LFGIRCMQSGASGYVCKQEDLSELVSAIKAVLSGYNYFPSQALN--------------PV 132

Query: 177 DVHWGKDFEL------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                +  EL        RE+  L   ++G+T+ EIA  + +S  TV+ Y   +M+K   
Sbjct: 133 RPDDPRSIELDLFKSVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLKV 192

Query: 231 KTRSGAIAYAVRNNIV 246
           K+    I  A RN +V
Sbjct: 193 KSLVDLIEMAKRNALV 208


>gi|309780590|ref|ZP_07675336.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
 gi|308920640|gb|EFP66291.1| DNA-binding response regulator, LuxR family [Ralstonia sp.
           5_7_47FAA]
          Length = 222

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 64/242 (26%), Gaps = 26/242 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              V +V+  +     + V  L +       +            +  +            
Sbjct: 2   QPPVQLVIADDHPGVVAAVRRLVSGVHGFEVVGEASNADELLAVLARV------------ 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +      D +  +    +            +   +  T         
Sbjct: 50  ---RCDLAITDYAMPGSRYGDGILLLEFLVRRHPD-----LRLMVLTMLETRALMSNILR 101

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                  S + +   I  G+         +         L A       +    H     
Sbjct: 102 AGIKVIVSKSDEPQHILEGMQAAVDGRIYLSP------LLNAKLLCRNGEPQPAHDDPVA 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L  RE+E L     GKT  EIA  L  S  T+++   + MRK    T +    +AVR+ 
Sbjct: 156 KLGKRELEVLRMYVTGKTVSEIAQQLNRSVKTISSQKQTAMRKLELGTEAALFDFAVRHG 215

Query: 245 IV 246
           ++
Sbjct: 216 LL 217


>gi|27364647|ref|NP_760175.1| LuxR family transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|320155042|ref|YP_004187421.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
 gi|27360792|gb|AAO09702.1| Transcriptional regulator, LuxR family [Vibrio vulnificus CMCP6]
 gi|319930354|gb|ADV85218.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 24/216 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R+ L   +       +         + + A   LL+R +      LD  +     
Sbjct: 12  DHPLFRNALFQSVHMAVSGANLLE-----ADSLDALLNLLIREEEPDLLLLDLKMPGANG 66

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +          ++                     +     +   + D+  +   
Sbjct: 67  MSGLIHLRAE--YPDLPIV------VVSASEEPAVVTQVKSHGAFGFIPKSSDMRTLVSA 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +           +               + +    K   LT ++ + L  +S+G  +
Sbjct: 119 LNQVLNGDPYFPEGLITN-----------NAACNDLAEKIAALTPQQYKVLGMLSDGLLN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 168 KQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|270260780|ref|ZP_06189053.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044264|gb|EFA17355.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 201

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 23/175 (13%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F    LD  +       L++ +          +L    +                A   N
Sbjct: 48  FSLVILDIGLPQVDGLQLLKKI--RRHYPQQPILIYTAQE------EEIYARMAWAAGAN 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +      + ++   +  +           + E               +    +   LT 
Sbjct: 100 GFVHKGSRLEQLVQAIETVLAGEPSFPAAAMAE---------------ETQPAEGVLLTP 144

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +E++ L  +S+G ++ +IA +L IS  TV+ +  +I+RKT        +A     
Sbjct: 145 KELQILGLLSKGLSNLQIAEMLNISNKTVSTHKKNILRKTGASNLLELVAVFREL 199


>gi|254448276|ref|ZP_05061738.1| Two Component Transcriptional Regulator, LuxR family [gamma
           proteobacterium HTCC5015]
 gi|198262143|gb|EDY86426.1| Two Component Transcriptional Regulator, LuxR family [gamma
           proteobacterium HTCC5015]
          Length = 208

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  + +     ++ L        R+           ++                 +
Sbjct: 1   MRVLLADDHQLFLDGITMLMADLVENVRVSTAGSLEELKSQL----------------VE 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
            F    +D  +        +  +           +     +      +  +         
Sbjct: 45  PFDLLVMDLRMPGMKGMRSLTGVVHR--------VPETPVVVISATESQADVNACMEAGV 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   +     +   L  +                L A  Q   ++S DV      EL+
Sbjct: 97  RGFIPKSTPAPEMLAILRRVLAGELYHP-------ALEATAQHPSWESDDVDRAAFSELS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GR+++ L  +++G T+ EIA +L IS +TV  +IA +       +R      A    ++
Sbjct: 150 GRQMQVLAEMAKGSTNKEIAAVLNISEHTVKTHIAKLFSVLKVNSRVECAQQARLMGVI 208


>gi|238563430|ref|ZP_00438873.2| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
 gi|254189698|ref|ZP_04896207.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254204651|ref|ZP_04911004.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|147754237|gb|EDK61301.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU]
 gi|157937375|gb|EDO93045.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|238520698|gb|EEP84156.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8
           horse 4]
          Length = 291

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 45  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 104

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 105 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDD 163

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 164 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASA 223

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 224 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 283

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 284 FASARGLI 291


>gi|94495970|ref|ZP_01302549.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
 gi|94424662|gb|EAT09684.1| two component transcriptional regulator, LuxR family protein
           [Sphingomonas sp. SKA58]
          Length = 209

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 32/218 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFDL 86
           +  +D   +    +  L +  G +  L                    LD  +      ++
Sbjct: 7   IYVVDDDEAIRRSLSFLLKTSGFAVQLFEGGLPFLKEAGHLAPGCVLLDVRMPDMDGLEV 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +                 +       +   +       + +    F           
Sbjct: 67  QRALRGRGVM--------LPVIIMTGHGDVDMAVQAMKAGASDFIEKPF----------- 107

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                +  L   +      +  +  +         +   LT RE + L  + +G  +  I
Sbjct: 108 ----EKAALLACIAAAQRQSVAERGLSARAMEAQARLNVLTDRERDVLNGLVDGLPNKTI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  LGIS  TV  + A++M+K   ++ + A+  A    
Sbjct: 164 AYDLGISPRTVEIHRANLMQKLEVRSLAEALRIAFHAG 201


>gi|53716990|ref|YP_105811.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC
           23344]
 gi|53721704|ref|YP_110689.1| GerR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|126457399|ref|YP_001074949.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1106a]
 gi|217419285|ref|ZP_03450792.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|226195037|ref|ZP_03790628.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242311517|ref|ZP_04810534.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
 gi|254179205|ref|ZP_04885857.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|254262387|ref|ZP_04953252.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
 gi|254299972|ref|ZP_04967418.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|52212118|emb|CAH38134.1| GerR family regulatory protein [Burkholderia pseudomallei K96243]
 gi|52422960|gb|AAU46530.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           23344]
 gi|126231167|gb|ABN94580.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106a]
 gi|157809957|gb|EDO87127.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           406e]
 gi|160694532|gb|EDP84542.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC
           10399]
 gi|217398589|gb|EEC38604.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           576]
 gi|225932842|gb|EEH28838.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           Pakistan 9]
 gi|242134756|gb|EES21159.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1106b]
 gi|254213389|gb|EET02774.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710a]
          Length = 296

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 50  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 109

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 110 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDD 168

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 169 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASA 228

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 229 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 288

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 289 FASARGLI 296


>gi|194290603|ref|YP_002006510.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG
           19424]
 gi|193224438|emb|CAQ70449.1| response regulator, LuxR family [Cupriavidus taiwanensis LMG 19424]
          Length = 219

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 10/217 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            ++    L    D    +          +         G++   L      Q  + D ++
Sbjct: 1   MSNAAPTLLVVDDHPMALSG-TTAFLAEVMPDVAVHAAGSAREALASL--QQGLRPDIVL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
              W  D            +  V+     +F     T        A     +     D  
Sbjct: 58  LDIWLNDGTGF---DAMQTFKTVIPGARFIFMSAEATPEIVGRARALSACGFVGKHLDAN 114

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +  +         D      L    Q+            +  LT R+   L  + 
Sbjct: 115 AFTAAVRKVLAGDTAFPTDE----ALNGRAQSFGPAHGIPVTPAELGLTPRQGSVLALVL 170

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           EG  +  IA  LG++ NTV  ++++I+++   +TR  
Sbjct: 171 EGLPNKVIARRLGLTENTVKEHVSAILQRLGVRTRMQ 207


>gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
 gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH
           7805]
          Length = 97

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 40/62 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 16  NASLSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 75

Query: 243 NN 244
           + 
Sbjct: 76  HG 77


>gi|307942191|ref|ZP_07657542.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
 gi|307774477|gb|EFO33687.1| glycerol metabolism activator [Roseibium sp. TrichSKD4]
          Length = 236

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 19/217 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P   + L   + L    S T    +L E  G     L +   +    LD  +   
Sbjct: 13  IIDDHPLFREALHSAVELAYPDSNTQDAASLDEACGY----LAKDSGYDLALLDLSIPGV 68

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +  +          V+                     A     +   +   A + 
Sbjct: 69  RGMEGLLHLRT--HFPRLPVV------VVSGNDDPRIVSQVLAYGAAGFVPKSSKKAALA 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +      +  D       L      M +           LT ++++ L  I +G 
Sbjct: 121 DAIQHVMSGAVYVPEDMDDAQTALDDKTQEMIQRVAS-------LTPQQMKVLKMICDGL 173

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 174 LNKQIAFELSVGETTVKAHVSEILRKLNVFSRTQAVI 210


>gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424]
          Length = 90

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   ASSKFETPASLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVE 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|333009595|gb|EGK29047.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-272]
          Length = 216

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYAMEDQERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|269218650|ref|ZP_06162504.1| DNA-binding response regulator, LuxR family [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269211761|gb|EEZ78101.1| DNA-binding response regulator, LuxR family [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 215

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 26/228 (11%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +D+ R   +         +A ++     +       ++ E +     +         
Sbjct: 1   MASDDDIRVMIIDDHEVVRRGIAEVVDRMDGLIVVAEAGSVQEAIRRGELV-----HPDV 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             +D  +      D++R +  +  D           +    F          A     Y 
Sbjct: 56  ALVDLRLPDGTGIDIIRRLTEAVPDTKC--------IVLTSFDDDEALAEAQAAGAKAYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +   A I   +  +     ++    +              +    H     +LT  E 
Sbjct: 108 LKSVRGAEITENIKAVASGRVLLDERTV-------------SRRRADHADPTADLTPSER 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 155 RVLELIGDGLSNREIGDRLGVAEKTVKNHITSLLSKMGLQRRTQVAAW 202


>gi|146280178|ref|YP_001170335.1| hypothetical protein Rsph17025_4179 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558419|gb|ABP73030.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 232

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            I         Y   T     +   L  +      +                    +   
Sbjct: 93  VIEALEKGAAGYIDKTQGARSMVNALNFILAGETYLPAFMR--------------LTPRR 138

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   +  LT +E+E L  ++ G  + EIA  +G+S  TV  ++ SI  K   K R+ A  
Sbjct: 139 HSSDERGLTPKELEVLGGLTIGLMNKEIAQNMGLSEVTVKMHVRSICAKLNVKNRTQAAM 198

Query: 239 YAVRNNI 245
            A +   
Sbjct: 199 VAAQFGY 205


>gi|331695588|ref|YP_004331827.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950277|gb|AEA23974.1| transcriptional regulator, LuxR family [Pseudonocardia
           dioxanivorans CB1190]
          Length = 206

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           + +       + +     D   +   +  +     +        I  L         S  
Sbjct: 87  QVLAALRAGASGFLCRDTDGFALADAVRRVAAGDVVFGP----GIADLVLDAHGAGASAG 142

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   LT RE + +  + +G T+ +I V L +S  TV N++  I RK     R+  +
Sbjct: 143 PVV-----LTEREADVVRLVVDGLTARQIGVRLVLSPRTVENHVQRIQRKLGVSGRAAMV 197

Query: 238 AYAVRNNI 245
            +A+ N +
Sbjct: 198 RFAIENGL 205


>gi|1586735|prf||2204343B mxcE gene
          Length = 236

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 13/222 (5%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----IVS 79
           +    +      ++ +D           + E  G          +   +        +V 
Sbjct: 10  ADSLAKGTPAETVLVIDDHPIVLQGCRRVLEDAGIESVAEATGTVAGYRLFHRLRPKVVI 69

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            D  F       L+   +   V      L   + +               Y         
Sbjct: 70  CDLTFQGSGLAGLALIRRMRAVEPGTRVLVFSMHNDPVIVSRALEAGALGYVLKDHASNE 129

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +      +      + R    E+ +L           D     + +LT RE + L  +++
Sbjct: 130 LFQAFEQVRKGEVFLDRRLATEVAML---------RADPRRTPESQLTPREQQILARLAQ 180

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           GK+   IA  L +S  TV N  + + +K   +  +  I  AV
Sbjct: 181 GKSYGAIAADLSVSYKTVTNACSQMRQKLGVRALAELIHVAV 222


>gi|332289326|ref|YP_004420178.1| response regulator FixJ [Gallibacterium anatis UMN179]
 gi|330432222|gb|AEC17281.1| response regulator FixJ [Gallibacterium anatis UMN179]
          Length = 193

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 26/209 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ----KLDSIVSSDWPFDLVRCMA 91
           +  LD   +       L    G           F EQ    +   ++             
Sbjct: 3   VHILDDDETVVDAATFLLTQAGYDVVSWSNSKTFLEQVNPFEPGVVLLDMRMPYFDGRQV 62

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                +  +VLQ    +    F  +   +         +        +++  L     + 
Sbjct: 63  HKILKQQNSVLQ---VIIMTAFADVDMAVNELKQGAIDFLQKPILFDQLKTAL-----EN 114

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             I  ++ ++   +                   +L+ +E E L  I EG  + +IA  L 
Sbjct: 115 ARIRSEKRFQQYQIEQCY--------------DQLSEKEKEVLALIIEGNINKQIAERLN 160

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IS  TV  + + IM K   K  +  I  A
Sbjct: 161 ISVRTVEVHRSHIMEKMNAKNVAELIRKA 189


>gi|307324056|ref|ZP_07603265.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306890505|gb|EFN21482.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 219

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 60/237 (25%), Gaps = 24/237 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++++L  +D    + +  +   +  +  +                    GA    LV   
Sbjct: 2   IHVLLVDDDAIVRAGLRLMLGGAPDIEVVAEAAD---------------GAEVAALVAAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +           +                 L    FHT    +    G  
Sbjct: 47  RPDVVLMDIRMPGVDGLTATAEVRARPGAPE--------VLVLTTFHTDAHVLRALRGGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         I   +  +     ++       +    A      ++            
Sbjct: 99  AGFLLKDTPPRDIVAAIRTVAAGDPVLSPAVTRRLIEQVAGGGQEDRATAARARLALL-G 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE E    +  G+++ EIA  L ++  TV  +++ I+ +     R           
Sbjct: 158 EREREVARAVGGGRSNAEIARGLHLALPTVKAHVSRILTRLDLNNRVQIALLVHDAG 214


>gi|300743763|ref|ZP_07072783.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa
           M567]
 gi|300380124|gb|EFJ76687.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa
           M567]
          Length = 201

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 61/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +     S ++ L    + L  +            +                  
Sbjct: 2   ITVLIADDQTMFGSALASLIDEEEDLEIVCVCRDGQEALDSIVTYI-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++  +     +                F +            
Sbjct: 48  -PNVALLDIEMPKLNGLDVLDEVQKQGIN--------TKIAILTTFQSPGYVRRALESGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   D   +   +  +     ++    L                          L 
Sbjct: 99  CAFITKDQDAEEVSNIIRDIHSGKVVVDSALL----------------LSGATLPANPLK 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R  + L    EGKT ++IA  L +S  TV NY++  ++     +R  A   A  N  +
Sbjct: 143 PRHQDVLKLTMEGKTVNQIARELYLSHGTVKNYLSEAIQLLHCTSRVEAAHTARTNGWI 201


>gi|260222153|emb|CBA31434.1| hypothetical protein Csp_F37510 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 222

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 11/137 (8%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L               A     Y       + + + +  +    R I  D        
Sbjct: 86  RTLVVTARMDAGSVRAALALGATGYVPKNESSSELLLAIRRVAQGRRYISND-------- 137

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A++F    V    + +LT  E   L  + EG TS EIA+ L IS  TV  +  ++ 
Sbjct: 138 ---IASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENLR 194

Query: 226 RKTATKTRSGAIAYAVR 242
            K   +  +   AYA+R
Sbjct: 195 SKLGIRNSAEMAAYAIR 211


>gi|269795845|ref|YP_003315300.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269098030|gb|ACZ22466.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 219

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 60/237 (25%), Gaps = 24/237 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D      +  +      L  +   D                G      V+  
Sbjct: 2   IRVLLVDDDPLVRRSLRQILDSDPRLTVVAEADD---------------GDGAVPAVQAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +    +                 +    F    + +       
Sbjct: 47  HPDVVVMDLRMRRVHGVEATAAVRRLPDPPE--------VVAMTSFGADEQVLRALDAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         I+  +  +      +       +        +           D  LT
Sbjct: 99  RGFLLKDATPTAIKEAVHAVVAGDASLSPAVARYVVDHVTSDPHGPARAAASRELD-GLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE      +  G T+DEIA  + +S  TV  +++S++ +   + R        R+ 
Sbjct: 158 DRERAVALGVHAGLTNDEIAQRMYVSAATVKTHLSSVLARLGLEGRVQLAILVERSG 214


>gi|229021072|ref|ZP_04177731.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
 gi|229024513|ref|ZP_04180960.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228736801|gb|EEL87349.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1272]
 gi|228740232|gb|EEL90571.1| Two component transcriptional regulator, LuxR [Bacillus cereus
           AH1273]
          Length = 188

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 22/178 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            ++ + D IV+              +    +  ++         +              +
Sbjct: 30  VEDTRPDVIVTDIRMKQYNGIELTKDLLSKFPDVKVV---ILSGYDHEEYYNAAFEAGAS 86

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +       +   +        +                        +       LT 
Sbjct: 87  AYITKERSAFDLANAIRQSHMGYILFS-------------------KNQIIGNNIEALTS 127

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E   L  IS+ KT+ EI+  L IS+ TV  +I+SI+RK    +R GA+   ++  ++
Sbjct: 128 AEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVKGIKKGLI 185


>gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599]
 gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599]
          Length = 76

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                        LT RE E    + + KT+ EIA  L IS  TV N+I+++M+K   K 
Sbjct: 1   MARLKGSDQTKPLLTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKG 60

Query: 233 RSGAIAYAVRNN 244
           RS A+   VR  
Sbjct: 61  RSQAVVELVRLG 72


>gi|328886152|emb|CCA59391.1| Hemoglobin-dependent two component system response regulator HrrA
           [Streptomyces venezuelae ATCC 10712]
          Length = 208

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 55/208 (26%), Gaps = 19/208 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D       L   +        + E   A        +L     +D ++      
Sbjct: 4   RLLLADDHPVVRAGLRAVLDTEADFTVVAEAATAER----AVELAAAGGVDVVLMDLQFG 59

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +     +          +        + T  + +       + Y         +   +
Sbjct: 60  SGMHGSEATAAITAAPGGPKVLV--LTTYDTDADILAAVEAGASGYLLKDAPPEELAAAV 117

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +       +              D        LT RE+E L  + EG ++ 
Sbjct: 118 RTAAAGQSALAPAVAHRL-------------MDRMRTPAEALTRRELEVLQLVGEGLSNQ 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKT 232
           +I+ +L +S+ TV +++  +  K    +
Sbjct: 165 QISKVLFLSQATVKSHLVHVFAKLGVDS 192


>gi|229015004|ref|ZP_04172081.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
 gi|228746271|gb|EEL96197.1| Two component transcriptional regulator, LuxR [Bacillus mycoides
           DSM 2048]
          Length = 188

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 22/178 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            ++ + D IV+              +    +  ++         +              +
Sbjct: 30  VEDTRPDVIVTDIRMKQYNGIELTKDLLSKFPDVKVV---ILSGYDHEEYYNAAFEAGAS 86

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +       +   +        +                        +       LT 
Sbjct: 87  AYITKERSAFDLANAIRQSHMGYILFS-------------------KNQIMGNNIEALTS 127

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E   L  IS+ KT+ EI+  L IS+ TV  +I+SI+RK    +R GA+   ++  ++
Sbjct: 128 AEQRILLLISKDKTNYEISTDLSISKRTVEYHISSIIRKLGVDSRVGAVVKGIKKGLI 185


>gi|84624586|ref|YP_451958.1| LuxR/UhpA family transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368526|dbj|BAE69684.1| transcriptional regulator luxR/uhpA family [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 215

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 66/238 (27%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +     + +  + ++   +  +   +   +   ++  L               
Sbjct: 3   IRVFLIDDHALVRTGMKMILSKEVDVCVVGEAESGEAALPQIRQL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      ++   +   +      ++    +   P                
Sbjct: 48  KPDIVLCDLHLPGVSGLEITERIVKGDYGTRVIIVSVLEDGPLP--------KRLLEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y     D   +   +  +    R +       + L      +  +     +     L+
Sbjct: 100 SGYVGKGGDAHELLRAVREVALGRRYLGNTIAQNLAL------SNLEGGGSPFDA---LS 150

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE+E    +++    ++IA  L +S  T+N + A +  K   +        A +  +
Sbjct: 151 PRELEVALLLTQVLRQEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALARLANQYGL 208


>gi|45259349|emb|CAF32983.1| GacA protein [Pseudomonas putida]
          Length = 176

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 12/182 (6%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R  +  +  L     +    D+    A  +  + +  ++      C      P       
Sbjct: 3   RVLVVDDHDLVRTGITRMLADIDGLEATRKLLRSHPDIKVVAVTVC---EEDPFPTRLLQ 59

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y +    +  +   + + F   R I      ++ L         KS+        
Sbjct: 60  AGAAGYLTKGAGLDEMVQAIRVAFAGQRYISPQIAQQVAL---------KSFQPQGSPFD 110

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++    I   +    I+  L +S  TVN Y   I  K +  +       AVR+ 
Sbjct: 111 ALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEKLSVTSDVELTLLAVRHG 170

Query: 245 IV 246
           +V
Sbjct: 171 MV 172


>gi|21242714|ref|NP_642296.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
 gi|58582209|ref|YP_201225.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624101|ref|YP_451473.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|166712049|ref|ZP_02243256.1| two-component system response regulator, LuxR family protein
           [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|188576769|ref|YP_001913698.1| response regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576961|ref|YP_001913890.1| response regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|289666063|ref|ZP_06487644.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670524|ref|ZP_06491599.1| LuxR family two-component response regulator [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|325923287|ref|ZP_08184960.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325927962|ref|ZP_08189183.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21108189|gb|AAM36832.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
 gi|58426803|gb|AAW75840.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368041|dbj|BAE69199.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521221|gb|ACD59166.1| response regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521413|gb|ACD59358.1| response regulator [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325541647|gb|EGD13168.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546214|gb|EGD17395.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 210

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 56/226 (24%), Gaps = 21/226 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         L+R++     +          + +                 +D  
Sbjct: 1   MRVIIVDDHTLVRAGLSRLLQTFAGIDVVGEASNAQQALDM-----TSLHRPDLVLMDLS 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D +     ++  +                                +       
Sbjct: 56  LPGRSGLDAM-----TDVLRAAPRTHVVMMSM---HDDPVHVRDALDRGAVGFVVKDAAP 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             + + L         +         ++A                   L+ R+ E L  I
Sbjct: 108 LELELALRAAAAGQVFLSPQI--SSKMIAPMLGREKPVGIAA------LSPRQREILREI 159

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             G+++ EIA  LGIS  TV  + A +M     +  +  +  A ++
Sbjct: 160 GRGQSNKEIAADLGISVKTVETHRARMMESLGCRRANDLVLLAAKH 205


>gi|330973916|gb|EGH73982.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 198

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 54/223 (24%), Gaps = 29/223 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + E   +    L         +                    G     L +  
Sbjct: 5   VRLVLADDHEVTRTGFVSLLAGHPEFEVVGQAAD---------------GQQAIDLCQEL 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +         R +           +     +   +  +        +   
Sbjct: 50  QPDIAILDIRMPVLNGLGAARILQQR--------MPGLKVVIFTMDDSTDHLEAAMSAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         +  GL  +      +       +         M +           LT
Sbjct: 102 VGYLLKDASRDEVIDGLQRVARGEEALNSAVSARL------LRRMTERNTSGAALPETLT 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            RE + L  ++ G ++ EI   LGI+  T   ++  ++ K   
Sbjct: 156 PRERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGA 198


>gi|298247654|ref|ZP_06971459.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550313|gb|EFH84179.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Ktedonobacter racemifer DSM 44963]
          Length = 907

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                     RY  +  D       L+       I     +  +   +   A+       
Sbjct: 776 QRALSLAAPERYMRVFLDEGEPIKALLQQAVTHSIQSSYVIQLLRAFSE-AASRTSHTQP 834

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE+E L  I  G+++  IA  L +S NTV  +++ I  K    +R+ A+A
Sbjct: 835 LLDP---LSERELEVLQCIMRGQSNQTIADHLQVSLNTVKTHMSHIFAKLHVNSRTQAVA 891

Query: 239 YAVRNNIV 246
            A    ++
Sbjct: 892 RANELQLI 899


>gi|34540945|ref|NP_905424.1| LuxR family transcriptional regulator [Porphyromonas gingivalis
           W83]
 gi|34397260|gb|AAQ66323.1| transcriptional regulator, LuxR family [Porphyromonas gingivalis
           W83]
          Length = 199

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              + E+  L           +    +   LT RE E +  + +G T+ EIA  L +S +
Sbjct: 102 HATVEELKQLLERLYQKTLEPEESGEEQQTLTNREKEIVVGVVKGMTNKEIAEELFLSTH 161

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  +  +I +K    + SG   YA+ N +V
Sbjct: 162 TVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192


>gi|328544601|ref|YP_004304710.1| transcriptional regulatory protein [polymorphum gilvum SL003B-26A1]
 gi|326414343|gb|ADZ71406.1| Transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1]
          Length = 233

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 7/218 (3%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            + A    +GA+H L+    +        +    WP            
Sbjct: 14  VSESTTAQKILDILEANLARIGATHILITGLPMPNRPIDSLVHRYRWPDTRNGSTESPVL 73

Query: 96  DKYYNVLQRPTELFCPVFHTLPENIT------PPAGMDNRYCSLTFDVARIRIGLMLLFP 149
               + L            T+              G  ++   +           +    
Sbjct: 74  HASDSALMLGLASNRATVWTVTAGDMDHSRLLAAVGEGSQILIVPVTELHPLQAFVFCAG 133

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAV 208
                 +  L  + LL        +        +   L+ RE + L   + GKT+ EIA 
Sbjct: 134 PKLKTGKYELAALELLTDAAFTRLQDIGALSSQRPGALSSRERKVLELTAFGKTASEIAE 193

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +L IS+ TV+ ++ +   K     ++  +  A+R   +
Sbjct: 194 LLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231


>gi|238898060|ref|YP_002923741.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465819|gb|ACQ67593.1| autoinducer response regulator [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 243

 Score = 89.6 bits (221), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 25/196 (12%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP----------- 123
           +  + +  P         ++      ++                 I              
Sbjct: 40  EISIITSHPI-WFEFYIQNKYQNIDPIIIMSLNRITSFSWDENIMINLNLKLSKIFKMSK 98

Query: 124 -AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-----WEIGLLAAYQANMF---- 173
              + + Y  +  D       L ++  +  I   + L      ++  L     +      
Sbjct: 99  TYNITHGYTFIVHDHKNNLALLSMMADQDYIAALNELIISNKDKLQTLLITVHDKMLFLY 158

Query: 174 KSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           K  D+   K  +    + RE E L W S GKT +EIA+ILGI   TV  ++ ++++K   
Sbjct: 159 KEMDIKHHKREDKEMFSTRENEILYWSSVGKTYEEIAMILGIKLGTVKFHMGNVVKKLGV 218

Query: 231 KTRSGAIAYAVRNNIV 246
                AI   V   ++
Sbjct: 219 INGKHAIRLGVELKLI 234


>gi|221633727|ref|YP_002522953.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
 gi|221157126|gb|ACM06253.1| putative two-component system response regulator [Thermomicrobium
           roseum DSM 5159]
          Length = 246

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 14/233 (6%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R + +S +       A        +    R+  L E    S        L + Q+ D ++
Sbjct: 9   RRTDLSTVIIGDPHAAVRQSFRHYLESAGRLRVLGEAGELSRLA----SLLEWQQPDVVL 64

Query: 79  SSDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFH---TLPENITPPAGMDNRYCSL 133
            S      +     +         V      L   V+         +           S 
Sbjct: 65  VSAAFGPGLAHFVRAIKRLSPGLAVADGSPALPLVVYGLGNDSDVVLALARAGAEALVSA 124

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
              V  +   +  +  + R +       I L    + ++             LT RE + 
Sbjct: 125 EASVQELVEAVEAVLRRERYVSPRY-GGILLREVQRWSVLHEGHTG----VRLTRRETQL 179

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G ++ EIA +L ++ +TV N ++ +  K   K R+ A  +A+ N ++
Sbjct: 180 LQLVASGLSNKEIADVLSLAESTVKNRLSLLFDKLGVKDRTQAAIFALANGVL 232


>gi|269103638|ref|ZP_06156335.1| transcriptional regulator LuxR family [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163536|gb|EEZ42032.1| transcriptional regulator LuxR family [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 209

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 33/233 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  I++  +     S +      +     ++  D   S    +                 
Sbjct: 4   QYTIIIADDHPLFRSALLQSVHLAIGGVTLLEADSLSSLQRLLEK-------------HH 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  + L +      ++         +              
Sbjct: 51  LDVDLLLLDLKMPGANGMSGL--IELRQCYPDLPIVVVSASEEPAII------KQVYRHG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   +  +  +   L  +         D             +     D    K   L
Sbjct: 103 AFGFIPKSSGMKALHGALNQVLAGDNYFPTDI------------DALDETDELVEKIATL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T ++++ L  +++G  + +IA  L +S  T+  ++ +I RK +   R+ A+  
Sbjct: 151 TPQQLKVLKMLADGLLNKQIAYELDVSEATIKAHMTAIFRKLSVTNRTQAVIL 203


>gi|255523112|ref|ZP_05390084.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
 gi|255513227|gb|EET89495.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium carboxidivorans P7]
          Length = 821

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E LT   +G    EIA  L IS  TV  ++ +I +K     +  AI  A    I
Sbjct: 761 LSQREIEILTLTVKGLKRSEIAAKLNISEGTVKTHLQNIYKKLQVSGKFEAIKIAQMYGI 820

Query: 246 V 246
           V
Sbjct: 821 V 821


>gi|31790500|emb|CAD56676.1| putative regularory protein [Enterobacter sakazakii]
          Length = 216

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T +  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEEEGRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|30063360|ref|NP_837531.1| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 2457T]
 gi|56480001|ref|NP_707803.2| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 301]
 gi|110805889|ref|YP_689409.1| ftsQAZ gene transcriptional regulator cluster [Shigella flexneri 5
           str. 8401]
 gi|30041612|gb|AAP17340.1| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 2457T]
 gi|56383552|gb|AAN43510.2| transcriptional regulator of ftsQAZ gene cluster [Shigella flexneri
           2a str. 301]
 gi|110615437|gb|ABF04104.1| Regulatory protein sdiA [Shigella flexneri 5 str. 8401]
 gi|281601358|gb|ADA74342.1| Regulatory protein SdiA [Shigella flexneri 2002017]
 gi|313650133|gb|EFS14546.1| regulatory protein sdiA [Shigella flexneri 2a str. 2457T]
 gi|332757474|gb|EGJ87809.1| regulatory protein sdiA [Shigella flexneri K-671]
 gi|332766648|gb|EGJ96852.1| autoinducer binding domain protein [Shigella flexneri 2930-71]
          Length = 208

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 13/198 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEAYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGIS 213
           W +EGKTS EIA+IL I+
Sbjct: 190 WTAEGKTSAEIAMILSIT 207


>gi|83311866|ref|YP_422130.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946707|dbj|BAE51571.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 211

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVS-WTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSSDW 82
           +    D       +   +   +     + E    +  L  +     F    LD  +    
Sbjct: 3   VLLADDHALFREGVRMVLESLSNEPLDIVEACDFNQVLTLVRGNADFDVALLDLSMPGMD 62

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            F  +  +  S  D Y  V+                         + Y   +   A +  
Sbjct: 63  GFSAIGAVRRSAPDIYLVVV--------SASEEPQTVRKALDSGAHGYICKSAGSASMMA 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
           G+  +      +         ++    A               LT R+ + L  + +GK+
Sbjct: 115 GIRSVLEGDTFVSP------HIVVPDTAAPSIGDINGEQLQSLLTPRQRDVLGMLRQGKS 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + EIA  L ++  TV  ++ +I+R    + R+ A   A +  
Sbjct: 169 NKEIARDLSLAEITVKLHVTAILRALGCENRTQAAILAAKMG 210


>gi|289642054|ref|ZP_06474207.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
 gi|289508127|gb|EFD29073.1| two component transcriptional regulator, LuxR family [Frankia
           symbiont of Datisca glomerata]
          Length = 221

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 59/220 (26%), Gaps = 10/220 (4%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            S    R++ ++    +   + AL E       +    +          +  D       
Sbjct: 7   ASTRPVRILLVNDHPVFLAGLRALLEATAVGEVVGDLTNGTDIIPAARRLRPDVVIFDFD 66

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSLTFDVARIRIGLM 145
                       + +   +    V     +                        +   + 
Sbjct: 67  DDDNDVLMLIRRISRECPQTAVLVLTRRHDYRTVAAVVRAGARGCAFKAARPGDLARAVE 126

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     I            A      F +         ELT RE   L  +++G ++  
Sbjct: 127 AVSRGEVIFGAHV-------ADGVLRHFDAAGAEQPPFPELTERERVVLCLVADGYSTAA 179

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  L ++  TV NY++ I  K   + R+ A   A R  +
Sbjct: 180 IAGELALTTKTVRNYLSKIFAKLEVRDRAEAAVIARRAGL 219


>gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586]
 gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586]
          Length = 224

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
           +    +  D+  +  G+  +      + R    E  L        ++S +         +
Sbjct: 106 SGVFYIDDDIDTLIKGMSKILQDEMWLARKLAQEYIL-------HYRSGNSVVTSQMYAK 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 159 LTKREQQIIKLLGSGSSNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|148271201|ref|YP_001220762.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829131|emb|CAN00029.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 228

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V++V+  ++    S ++ +   S  +A    +                   +    VR  
Sbjct: 18  VSVVVIDDESLVRSGIAMVLGASPRIAVRAAVSSD----------------TAVATVREH 61

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +A    +     +          F T  + +       
Sbjct: 62  APDVVLLDIRMP---APDGLAILAELMAEPRPPAVA-----MLTTFDTDDQVLEALHRGA 113

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +     D  ++   ++ L   G ++                      D    +   L 
Sbjct: 114 SGFLLKDTDPEQLARHVLTLASGGIVLAPGLRPGRLF-------RSLEDDAARARVARLG 166

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE   L  ++ G ++ EI    G++  TV   ++SI++     TR  A   A R  +V
Sbjct: 167 DRETIVLKALARGLSNAEIVAECGLTLGTVKETVSSIVQALGVGTRVEAAVVADRAGLV 225


>gi|157370683|ref|YP_001478672.1| LuxR family transcriptional regulator [Serratia proteamaculans 568]
 gi|157322447|gb|ABV41544.1| transcriptional regulator, LuxR family [Serratia proteamaculans
           568]
          Length = 497

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKD------FELTGREVECLTWISEGKTSDEIAVI 209
            + + +    +        +       +       +LT RE + L  I EG    +IA  
Sbjct: 392 EEVMQDASWFSQTLLEKLANVKSINKPNLSGFSFTDLTARERDVLGLICEGLPDKKIATR 451

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L ++ NTV N++A +  K    +RS AI +A    +
Sbjct: 452 LNLAPNTVRNHVAMVYSKLDVHSRSEAIVWARERGL 487


>gi|311894380|dbj|BAJ26788.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 215

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  ++    + +  + T ++ +  +               L               
Sbjct: 2   IRVLVADDEPLIRAGIRMILTSAEDIEVVGEAPDGAQALRLARELA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++       L    AL+E  +     +         F      +       
Sbjct: 48  ------ADVLLLDIRMPVLDGLSALAELPRAAPGTRAL---VLTTFGERENVLRAITSGG 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +       A +   +         +       I    A      +  +    +   LT
Sbjct: 99  AGFLLKDTAPAELIQAVRAAATGNAFLSPAATRHIVDTLAEGPATAR-GEQARRRLAVLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + +  + EG ++ +    L +S  TV  Y++ I+ K   + R  A   A    +
Sbjct: 158 ARERDVVGLLGEGLSNADTGARLRMSEATVKTYVSRILAKLGCENRVQAALLARDAEL 215


>gi|51244367|ref|YP_064251.1| two-component system response regulator [Desulfotalea psychrophila
           LSv54]
 gi|50875404|emb|CAG35244.1| related to two-component system response regulator [Desulfotalea
           psychrophila LSv54]
          Length = 197

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 8/160 (5%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-----PENITPPAGMDNRYCSLTFD 136
            P DL+        D    V+   T    P+          E +         Y +    
Sbjct: 34  LPKDLMTNCDALIVDLKDCVVPVNTSCPTPIIVLTGVPTFQEALALLQLNVKGYGNRQMR 93

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +R  +  +      +    + ++       +    + +    K   L+ RE E  + 
Sbjct: 94  QDNMRQVVENVKAGQIWLPPSIINQLIATVGTDSTASHTANAILNK---LSKREQEVASC 150

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++EG ++ EIA  + +S  TV  +++SI  KT  + R   
Sbjct: 151 VAEGMSNQEIADKMYVSLRTVKAHLSSIYEKTGLRNRLEL 190


>gi|154243760|ref|YP_001409333.1| autoinducer-binding domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162882|gb|ABS70097.1| Autoinducer-binding domain protein [Xanthobacter autotrophicus Py2]
          Length = 233

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 21/224 (9%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
                +    +  L + +G   +  +               S++  +             
Sbjct: 15  ACTEQALKEALAELVQDLGFDGYAYLNVQPV-----RIFAVSNYASEWQARYLTQNYAMI 69

Query: 99  YNVLQRPTELFCPVFH------------TLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
             V+                            +     G+ +               L L
Sbjct: 70  DPVVTMAKAQMKAFAWAAAAPRSLSKPLRRFYSEASDFGIRSGISIPVRTAFGHLSMLTL 129

Query: 147 LFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
              K  + L   + +I  +      +     +  +     + +L  ++  CL W +EGKT
Sbjct: 130 ASHKPSLNLETDIDQIAAVTAVAQLHAKMEQQDAEPTASVEIDLKAKQALCLKWSAEGKT 189

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +IA I G+S  TVN ++ +  +     + + A A A +  ++
Sbjct: 190 MKDIASIEGMSFATVNFHLNNARKALDAGSLAQATALATKLKLI 233


>gi|306837047|ref|ZP_07469992.1| DNA-binding response regulator [Corynebacterium accolens ATCC
           49726]
 gi|304567075|gb|EFM42695.1| DNA-binding response regulator [Corynebacterium accolens ATCC
           49726]
          Length = 207

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 39/242 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++ +  +++   S ++ L    D L                   +          +   
Sbjct: 2   ISLAIVDDEQLIASSLATLLELEDDLKVTETFASGEEVISWWKRAST---------LDSP 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-- 125
           L      D  +      +L + ++           +   +    +  +            
Sbjct: 53  LPNVLVTDLQLGGIDGVELAQEIS-----------RLSPQTAIVIVTSHSRPRQLKRALT 101

Query: 126 -MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T         +  +      I ++                           
Sbjct: 102 SGVQGFLPKTATAEEFATAIRTVHEGRSFIDQELAA----------------TTITATSS 145

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REVE +     G + ++IA  + ++  T  NY++S M K   + R  A   A    
Sbjct: 146 PLTEREVEVIEAAGNGGSIEQIAKEVFLATGTTRNYLSSAMTKLGAQNRFEAYLRAQELG 205

Query: 245 IV 246
            +
Sbjct: 206 WI 207


>gi|300088662|ref|YP_003759184.1| LuxR family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528395|gb|ADJ26863.1| two component transcriptional regulator, LuxR family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 248

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 72/247 (29%), Gaps = 29/247 (11%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
             + + L  +     + +  L      +  +   +       ++  L             
Sbjct: 24  SPIRVFLVDDHPIVRTGMKTLVREQPNMDCVGEAEGNQEAIDKIETL------------- 70

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                  + D +V      ++     +   +                 ++L + +     
Sbjct: 71  -------QPDVVVIDSELTEMDTMEIVRAVNANSPGTAVVVLTSRGDEYSLAQALQYEVA 123

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY------QANMFKSYDVH 179
               + +       I I +      G +  R  L+    L          ++        
Sbjct: 124 ---GFITRESSKELIAIAIRAAAAGGGLWDRTLLYRAIRLLRLPTKLQEASDDSSEITSA 180

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +L+ RE+  L  +S+G T+ EIA+ L  S + V  Y+  IM K     R+     
Sbjct: 181 DIVVQQLSPREMSTLRLVSDGMTNKEIAMKLNCSESAVKGYVTRIMNKLNVTNRTQIALK 240

Query: 240 AVRNNIV 246
           A + NI+
Sbjct: 241 ASQLNII 247


>gi|327390805|gb|EGE89145.1| bacterial regulatory s, luxR family protein [Streptococcus
           pneumoniae GA04375]
          Length = 72

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE + L  I++G  +  IA  L IS  TV  ++++I+ K     R+ A  YA +++
Sbjct: 6   ELTARERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHH 65

Query: 245 IV 246
           +V
Sbjct: 66  LV 67


>gi|228964507|ref|ZP_04125619.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795209|gb|EEM42703.1| hypothetical protein bthur0004_13540 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 176

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 16/162 (9%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D ++      +  R +                 +    F    +    
Sbjct: 31  LALQLRPDIILMDLVMDEMDGVEATRAIIQEW--------PEAKIVVVTSFLDDEKLYPV 82

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y   T   + I   +   +    ++      ++        +  +        
Sbjct: 83  IEAGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKM-------MSRMRQKKEQPLH 135

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           + ELT RE E L  I+EGK++ EIA  L I+  TV  ++++I
Sbjct: 136 E-ELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNI 176


>gi|300781534|ref|ZP_07091388.1| LuxR family two component transcriptional regulator
           [Corynebacterium genitalium ATCC 33030]
 gi|300533241|gb|EFK54302.1| LuxR family two component transcriptional regulator
           [Corynebacterium genitalium ATCC 33030]
          Length = 228

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 30/243 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +VL  + +     +S L      +  +                    GA    ++   
Sbjct: 5   VRVVLVDDHQLMRGGLSMLLGTVGEVEVVGEAAD---------------GAEALTVIECT 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D+ +      +L    A                +    F   P      A   
Sbjct: 50  DPDVVLADARMPGMDGLELTAQCARHH--------PGVPVIILTTFDDTPVVEGALAAGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD-------VHW 180
             +         +   +      G +I       +    +  ++  +             
Sbjct: 102 AGFLLKDSSTDDLVSAVRAAVSGGLVIDPRVARTVMTKESSASSSAREAGDSNGFGISVD 161

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT  E    + IS G  + EIA  L ++  TV N+++++MRK     R+      
Sbjct: 162 ALLEQLTPTERRVASLISRGWNNREIAGDLVLAEGTVKNHVSAVMRKLLVHDRTRLALLL 221

Query: 241 VRN 243
             +
Sbjct: 222 RDH 224


>gi|228968226|ref|ZP_04129225.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791489|gb|EEM39092.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 213

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     M A          +      F    LD  + +    
Sbjct: 3   RVLIVDDHQIVGEGTKSMIELEEDMQAEYILNEQEALIKSEATPFDVYLLDMNMPNCSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +          ++      +   F+ L  +        +   S +     + + +
Sbjct: 63  ELAKKI--LHIQTDAKIILYTGFEYVSQFNLLINS------GISGIISKSASQQELLMAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++    L ++            +      K   LT +E+E L  +S+G ++ 
Sbjct: 115 RAAVNGYTLLPISLLRQLRT-------DDITTQQLENKTALLTQKELEILESVSKGSSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S   V   +  I +K    +RS A+  A+R+ I+
Sbjct: 168 QIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRHGIL 209


>gi|254514035|ref|ZP_05126096.1| two component transcriptional regulator, LuxR family [gamma
           proteobacterium NOR5-3]
 gi|219676278|gb|EED32643.1| two component transcriptional regulator, LuxR family [gamma
           proteobacterium NOR5-3]
          Length = 219

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 59/227 (25%), Gaps = 29/227 (12%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           V+  +       +S L + + + A++I  +        +                     
Sbjct: 4   VIADDHPLFREALSMLISGNPIGAQVIHAENVAELHKSVEQ--------------DGAPD 49

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +     F  +             V+                           +
Sbjct: 50  LLLLDLHMPGATGFSALGWFV--GNYPDKPVVIVSANT------HAETVRRAIDHGAAAF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S +     +   +  +    R +          L                    LT ++
Sbjct: 102 LSKSSSTDTMVQCIEQVLAGERGLHPG-------LDISVNGASLQALDVADALASLTPQQ 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               + + EG  + +IA  LG+   T+  ++  + RK   ++R+ A+
Sbjct: 155 FRVASMLVEGLLNKQIAYELGVKEATIKAHMTEVFRKLGVQSRTQAV 201


>gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41]
 gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 377

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL--TGREVECLTWISEGKTSDEI 206
            +     +  L  +  +                K  EL  T RE   L  ++EG  + +I
Sbjct: 277 GEEFDCTKSELLLLEEVGKRLGLFLSRKGEKVEKCTELHLTERESMILGLLAEGYDNKKI 336

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +L +S +TV +Y++S+M K   K R+  +A A R  ++
Sbjct: 337 GGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 376


>gi|82544494|ref|YP_408441.1| DNA-binding transcriptional regulator CsgD [Shigella boydii Sb227]
 gi|157160562|ref|YP_001457880.1| DNA-binding transcriptional regulator CsgD [Escherichia coli HS]
 gi|170020563|ref|YP_001725517.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ATCC
           8739]
 gi|188492464|ref|ZP_02999734.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300918637|ref|ZP_07135219.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|312971173|ref|ZP_07785351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|81245905|gb|ABB66613.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Shigella boydii Sb227]
 gi|157066242|gb|ABV05497.1| transcriptional regulator CsgD [Escherichia coli HS]
 gi|169755491|gb|ACA78190.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739]
 gi|188487663|gb|EDU62766.1| transcriptional regulator CsgD [Escherichia coli 53638]
 gi|300414180|gb|EFJ97490.1| transcriptional regulator, LuxR family [Escherichia coli MS 115-1]
 gi|309701312|emb|CBJ00613.1| probable csgab operon transcriptional regulator [Escherichia coli
           ETEC H10407]
 gi|310336375|gb|EFQ01561.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1827-70]
 gi|323937781|gb|EGB34045.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           E1520]
 gi|332094032|gb|EGI99084.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 3594-74]
          Length = 216

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|56964425|ref|YP_176156.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
 gi|56910668|dbj|BAD65195.1| transcriptional regulator of spore coat protein [Bacillus clausii
           KSM-K16]
          Length = 74

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
              +G    LT RE E    + + +T+ EIA  L IS  TV N+I++ M+K   K RS A
Sbjct: 3   GADFGPKPLLTKREREVFELLVQDQTTKEIANHLFISEKTVRNHISNTMQKLGVKGRSQA 62

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 63  VIELIRLG 70


>gi|320094339|ref|ZP_08026127.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978727|gb|EFW10282.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 254

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 70/277 (25%), Gaps = 64/277 (23%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D      ++ + +  D +  +               L               
Sbjct: 1   MRVLIVDDDAIVVQSLATILSAEDGIDVVGTCLSGAEAVQEFRRL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                + D ++            A  E  +      +   +F   F      +       
Sbjct: 46  -----RPDVLLMDIRMPGADGLSAAEEILEGDP---QARIVFLTTFSDDEYIVRALRMGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS------------ 175
             Y     DVA+I   L  +     ++  D L     +                      
Sbjct: 98  RGYLIK-QDVAQIAPALRSVMVGVCVLEGDVLERGASMGMRALPAPAPGSGAGTSGGGSG 156

Query: 176 ----------------------------YDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                                        D        LT RE E +  ++ G  + E A
Sbjct: 157 TSGSGPGKNGGRPGAHGDPGEPAGAVGVPDPRSTVFASLTDREYEVVEAVAAGLDNAETA 216

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +S  TV N+I+SI+ KT  + R+       R  
Sbjct: 217 ERLFMSEGTVRNHISSILAKTGLRNRTQVAVRYYRAG 253


>gi|218549230|ref|YP_002383021.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ATCC 35469]
 gi|218356771|emb|CAQ89399.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia fergusonii ATCC 35469]
 gi|324113838|gb|EGC07812.1| luxR family protein regulatory protein [Escherichia fergusonii
           B253]
 gi|325497648|gb|EGC95507.1| DNA-binding transcriptional regulator CsgD [Escherichia fergusonii
           ECD227]
          Length = 216

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K + K R+ A+++A
Sbjct: 195 FKKISVKNRTQAVSWA 210


>gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605]
          Length = 92

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D     +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSLDGTDPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ N 
Sbjct: 61  RVALLNWAMDNG 72


>gi|222083272|ref|YP_002542675.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738652|gb|ACM39490.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 234

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 73/241 (30%), Gaps = 24/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + H   R   LA +         T  +  LT++ G + +  +       Q   +I  +++
Sbjct: 1   MQHWLDRLTDLAAIQG--DESILTQGLADLTQHFGFTGYAYLHI-----QHKHTIAVTNY 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNR 129
             +          DK   V++R                                 G+ + 
Sbjct: 54  HREWRSTYFDKHFDKLDPVVKRAKSRKQVFAWSGEQDRARQSKEERAFYAHAADFGIRSG 113

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFE 185
                           L   K  I L   +  +         +    F            
Sbjct: 114 VTVPIKTANGSMSMFTLASEKPAIDLDREIDAVAAAAAVGQLHARISFLQTTPTVEDAAW 173

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +EIA + GI  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGMTMEEIADVEGIKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC
           796-83]
          Length = 159

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMF 173
                   G+            R    L        +  I+  +   ++ LL        
Sbjct: 25  LWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMAL 84

Query: 174 KSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +       +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K    
Sbjct: 85  MRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAP 144

Query: 232 TRSGAIAYAVRNNIV 246
            ++    YA    ++
Sbjct: 145 NKTQVACYAAATGLI 159


>gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
 gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti
           AK83]
          Length = 255

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
              G  N    L  ++      + LL   G       L            +         
Sbjct: 112 VDEGSVNGVLPLNLNLDLCLTAIDLLMKGGEHFPAALLRRPAPRGLAGGGLVAQKQASLE 171

Query: 182 K----------DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                         LT RE + L  I  G  +  IA  LG+S NTV  ++ +I +K   +
Sbjct: 172 DIDLERKIDFGQDLLTMRETQILDLICVGMQNKIIADRLGLSENTVKVHVRNIYKKMNVR 231

Query: 232 TRSGAIAYAVRN 243
            R+ A A   R+
Sbjct: 232 NRTEAAARYFRS 243


>gi|304439828|ref|ZP_07399722.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371567|gb|EFM25179.1| possible response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 196

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REVE L  + +G+   +IA  L IS  T+ N+I++I  K   K    A   A+   
Sbjct: 131 TLTEREVEVLREMIKGENKKDIAKKLYISERTLYNHISNIYEKLGAKNIVEAYNRAMELG 190

Query: 245 IV 246
            +
Sbjct: 191 YI 192


>gi|227820767|ref|YP_002824737.1| predicted two-component transcriptional regulator, LuxR family
           [Sinorhizobium fredii NGR234]
 gi|227339766|gb|ACP23984.1| predicted two-component transcriptional regulator, LuxR family
           [Sinorhizobium fredii NGR234]
          Length = 215

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 63/240 (26%), Gaps = 30/240 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +       +    +  D    ++                    A+     
Sbjct: 1   MPDMTIIIADDHPLFRGAMRQALSGMDGSPAVVEAGD--------------FAAARKAAA 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +        +  +                 +                
Sbjct: 47  DNPDADLMLLDLTMPGVSGLSGLIALRAE--------FPSLPVMIVSAHDDPATIHRAID 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + S +  +  IR G+  +      +                           +  
Sbjct: 99  LGAAGFLSKSAGIEEIRDGIGKVIAGEIFVPAGYDQN--------QEYEPEVADLLHRLQ 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT ++   L+ ++EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+    +  
Sbjct: 151 TLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLG 210


>gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465]
 gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066]
 gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465]
          Length = 74

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|17158658|ref|NP_478169.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17134607|dbj|BAB77165.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 240

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM----ALSEKDKYYNVLQ 103
            M A  E  G+ H+ +   D   +Q   +I     P   +       A  +K   Y V  
Sbjct: 25  YMDAAGELFGSQHWGIYIHDWAGQQG--TIHLQGLPDSFIDYYSKVGAALDKVMEYVVCH 82

Query: 104 RPTELFCPVFHTLPENITPPAGMDNR--------YCSLTFDVARIRIGLMLLF-PKGRII 154
                   +F       +    +                    R+   +           
Sbjct: 83  HAPAHEQIIFTEATWKQSELYQIGCGKIYDHEHIMTGPIVGEGRLIGTVQFARTSGNPAY 142

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVI 209
               L ++  + A+ +                 +  LT RE++    +++G T+ EIA  
Sbjct: 143 NTQDLLQLSAICAHLSAKLALLRSQHELFVPKPEISLTPRELQMAALVAKGLTNAEIAAE 202

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           L IS+NTV   +  I RK     R+  +A 
Sbjct: 203 LWISQNTVKQTLKRIFRKLDVSARAEMVAR 232


>gi|255008092|ref|ZP_05280218.1| putative transcriptional regulatory protein [Bacteroides fragilis
           3_1_12]
 gi|313145809|ref|ZP_07808002.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|313134576|gb|EFR51936.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 225

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 44/120 (36%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                        I   L     K R I       +   +     +   +     +D  L
Sbjct: 99  AFGVVLKDNSKEEIMSALQCASRKERFICNHVSNLLLSGSGNTNTVSSVHTFVPQEDRLL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        AI YA+R  IV
Sbjct: 159 TPTEKIILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEAIKYAMRAGIV 218


>gi|224023812|ref|ZP_03642178.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM
           18228]
 gi|224017034|gb|EEF75046.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM
           18228]
          Length = 149

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           ++  +A   + +    +        L+ RE E +  +  G T+ EIA  L IS +TV  +
Sbjct: 55  DLDAVAHKISTLMNVNEEEDSDQNSLSQREKEIIGCVVRGMTNKEIAEQLFISVHTVITH 114

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
             +I RK    + +G   YA+ N +V
Sbjct: 115 RRNITRKLQIHSAAGLTIYAIVNKLV 140


>gi|188592229|ref|YP_001796827.1| response regulator receiver, luxr chey family [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938603|emb|CAP63590.1| putative response regulator receiver, luxR cheY family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 219

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 61/221 (27%), Gaps = 32/221 (14%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPF 84
           A ++ +D   +    + +L   VG    L             D      LD  +      
Sbjct: 17  ATVLVVDDDAALRRALGSLFRSVGLKVALYASAAELLAAPFPDTPCCLLLDVRLRGPSGL 76

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL   +                 +F   +  +   +         +    F    +   +
Sbjct: 77  DLQARLGQLGVHI--------PIIFMTGYGDIAMTVAAMKAGAEDFMPKPFRDQDLLDAV 128

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                K R           L A Y                 LT RE E +     G  + 
Sbjct: 129 AAALEKDRGRREGLRQLEALHACY---------------RSLTPREGEVMGLAVSGLLNK 173

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +IA  +GIS  TV  +    MRK   +T +  +  A +  I
Sbjct: 174 QIAAEIGISEVTVKIHRGQAMRKMKARTFAELVLMAQQLGI 214


>gi|332993772|gb|AEF03827.1| Response regulator, LuxR family (CheY, HTH domains) [Alteromonas
           sp. SN2]
          Length = 216

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 63/230 (27%), Gaps = 27/230 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +     + +        +   ++          ++ A               
Sbjct: 2   KIRVLIADDHPLFRAAMCQAL-GDIVGPLILQASTLNETLSQLEA--------------N 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +  +               +          +               A  
Sbjct: 47  PDIDLVFLDVKMPGNDGL--------IGLSEVRARFPDVLVVMVTALEEANLIRKALALG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   +  +  I   +  +    + +          L           D    K   L
Sbjct: 99  ACGFIPKSASIECIAEAVERVIDGEQWLPESVAN----LNDDATETETKTDDFSVKLAML 154

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           T  +++ L  +++G  + +IA  L IS +TV  ++++++RK     R+ A
Sbjct: 155 TPHQLKVLRMVADGLLNKQIAYELDISESTVKQHVSAVLRKLNVINRTKA 204


>gi|325570549|ref|ZP_08146275.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156395|gb|EGC68575.1| transcriptional regulatory protein DegU [Enterococcus casseliflavus
           ATCC 12755]
          Length = 202

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 75/240 (31%), Gaps = 40/240 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L  + E     + +   +    + +        +   M                 
Sbjct: 2   PIKLALLDDHELVLEGIKNTLQKEPSFSIIGAFTKPTDFFQAM---------------AN 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD ++     F+L+  +         + L     +    F+    +       
Sbjct: 47  QSIDIVLLDMMLKGTHAFELIPRIHTL----TDDTLP--KIIMLSGFYEPLLHKRAFELG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +         +   +  ++   ++       E  +                     L
Sbjct: 101 IWAFLRKEASYDELITTIKTVYHGNKVSPEHLFLEKDMRL-------------------L 141

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  E + L  IS+ +T+++IA  L ISR TV N+++SI  K   +TR GA+   ++ N++
Sbjct: 142 SEIERQVLELISQEQTNEKIAKKLFISRRTVENHVSSICNKLNVQTRIGAVREGIKLNLI 201


>gi|288802576|ref|ZP_06408015.1| transcriptional regulator [Prevotella melaninogenica D18]
 gi|288335104|gb|EFC73540.1| transcriptional regulator [Prevotella melaninogenica D18]
          Length = 214

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L     L  +  NM  +      K+   LT  E E L  I+ G T+ EIA     S +T
Sbjct: 118 VLQGQRFLCQHATNMILAPTALVDKEIVALTKTETEILKEIALGATTREIADKRFSSFHT 177

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN +  +I RK        AI YA+R+ +V
Sbjct: 178 VNTHRKNIFRKLGVNNVHEAIRYAMRSGLV 207


>gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 921

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 76/258 (29%), Gaps = 25/258 (9%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIP--LDCTVSWTMRMYALTEYVGASH---FLL 63
            + ++R  ++    +  +     +  R+             ++  +              
Sbjct: 668 RLAVSRGWQR----LQAMLLAEQVRVRLQRGNFTGAEQLQRQLEQMAASFRMDAEHPCQR 723

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                    +   ++++         +A    D+     +        +  +L    +  
Sbjct: 724 AIVMSASLSRSRLLLATGQAPQACVLLAEMVSDQESRGDRLTAARLRTL-WSLALWNSGK 782

Query: 124 AGMDNRYCSLTFDVARIR---IGLMLLFPKGRII------LRDRLWEIGLLAAYQANMFK 174
                        +A  +      +      + +            E   +    A+   
Sbjct: 783 TAAARTTFQPVVQLAEQQHLKGLFLEAGDTLQPLLAGMNESSSACTEKRGVQGSWADKRG 842

Query: 175 SYDV------HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             D             EL+ RE++ L  I+EG+ + EIA  L IS  TV  +I +I  K 
Sbjct: 843 PVDGTPFNSGSPDIPGELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKL 902

Query: 229 ATKTRSGAIAYAVRNNIV 246
              +R+ A++ A+   ++
Sbjct: 903 KVNSRTQAMSRALEMKLL 920


>gi|194428408|ref|ZP_03060948.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|260843280|ref|YP_003221058.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|194413460|gb|EDX29742.1| transcriptional regulator CsgD [Escherichia coli B171]
 gi|257758427|dbj|BAI29924.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O103:H2 str. 12009]
 gi|323163719|gb|EFZ49538.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli E128010]
          Length = 216

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYAMEDQERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|193064557|ref|ZP_03045637.1| transcriptional regulator CsgD [Escherichia coli E22]
 gi|192927809|gb|EDV82423.1| transcriptional regulator CsgD [Escherichia coli E22]
          Length = 216

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N       D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYAMEDQERVVNGLQGVLRGECYFTQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|159900854|ref|YP_001547101.1| two component LuxR family transcriptional regulator [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893893|gb|ABX06973.1| two component transcriptional regulator, LuxR family [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 343

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 75/237 (31%), Gaps = 37/237 (15%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+ IV+  +     + +S   +    +  +  +         +                 
Sbjct: 8   QIRIVVADDHAVVRAGISTALSDLPNVEIVAEVGDGPGVLAAL----------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
               + + D++V             + +   +Y  L+         +             
Sbjct: 51  ----DLRPDALVIDVSMPQFEPLQTIRQIRMHYPQLKILVVS---AYDDDVYVQGLLQAG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y      +A IR+ L  +    R +    L ++                    +  L
Sbjct: 104 VDGYQLKDQPLADIRLALQRVLAGERWVCTPLLSKL-------------MRGVPVVETGL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T R+ E L  + +G  +  IA  +G+S  TV N++  + R+   ++R  A+ YA ++
Sbjct: 151 TPRQRELLWCLQQGDDNHAIARRIGLSVKTVENHLTRLYRQIGVQSRLEAVHYAAQH 207


>gi|302559828|ref|ZP_07312170.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477446|gb|EFL40539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 200

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S    +  + E   G     + R        LD  +     
Sbjct: 2   RVLLADDEHLIRGALVALLSLEDDLTVVAEAASGPEALAMARAHTPDVAVLDLQMPGADG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   +           L     L               A     +   T    R+   
Sbjct: 62  VKVATSLRAE--------LPGCRVLIVTGHGRPGHLKRALAAGVRGFVPKTVSAQRLAEI 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +  +                   D     D  LT RE E L   ++G   
Sbjct: 114 IRTVHAGNRYVDPELAA----------------DAIAAGDSPLTAREAEVLELAADGAPV 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    +S+ TV NY++S + K   + R  A+  A     V
Sbjct: 158 AEIAERAALSQGTVRNYLSSAVTKLGAENRHAAVRLARERGWV 200


>gi|16129003|ref|NP_415558.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107885|ref|AP_001665.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K-12 substr. W3110]
 gi|170080692|ref|YP_001730012.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900295|ref|YP_002926091.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|256023262|ref|ZP_05437127.1| DNA-binding transcriptional regulator CsgD [Escherichia sp.
           4_1_40B]
 gi|300950131|ref|ZP_07164076.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|300954426|ref|ZP_07166878.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|301644945|ref|ZP_07244913.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|307137675|ref|ZP_07497031.1| DNA-binding transcriptional regulator CsgD [Escherichia coli H736]
 gi|331641579|ref|ZP_08342714.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
 gi|1706166|sp|P52106|CSGD_ECOLI RecName: Full=CsgBAC operon transcriptional regulatory protein
 gi|1147562|emb|CAA62280.1| putative regulatory protein [Escherichia coli K-12]
 gi|1787277|gb|AAC74124.1| DNA-binding transcriptional activator for csgBA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062613|dbj|BAA35830.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli str. K12 substr. W3110]
 gi|169888527|gb|ACB02234.1| DNA-binding transcriptional regulator of adhesion determinants
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238860897|gb|ACR62895.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli BW2952]
 gi|260449819|gb|ACX40241.1| transcriptional regulator, LuxR family [Escherichia coli DH1]
 gi|300318576|gb|EFJ68360.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1]
 gi|300450478|gb|EFK14098.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1]
 gi|301076735|gb|EFK91541.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1]
 gi|323942508|gb|EGB38675.1| luxR family protein regulatory protein [Escherichia coli E482]
 gi|331038377|gb|EGI10597.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H736]
          Length = 216

 Score = 89.6 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|330821298|ref|YP_004350160.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
 gi|327373293|gb|AEA64648.1| PAS/PAC domain protein [Burkholderia gladioli BSR3]
          Length = 541

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 70/233 (30%), Gaps = 8/233 (3%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R +    +   +  +                 A     G +   ++     +   
Sbjct: 276 RQSEERFAKAFRMAPVAMAILTAGGC----EILDCNEAFAAMTGHAQHEVLGRSAEEIGL 331

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
                 +    D +               +       P    +  ++    G D    +L
Sbjct: 332 WAEPGMTREIVDAIGREGAVRMRDA----RVLRHDGEPRDCLVSADMVAIHGQDCLLLAL 387

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                R R  + L+      +     +   L+                +  +LT RE + 
Sbjct: 388 LDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANVRRDKAPDAGAQLADLTARERDV 447

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +  G    EIA  LG++ NTV N++++I  K    +R  AI +A    IV
Sbjct: 448 FDLLCHGLPDKEIANRLGLAPNTVRNHVSTIYNKLDVHSRGEAIVWARERGIV 500


>gi|319794223|ref|YP_004155863.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596686|gb|ADU37752.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 303

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 65/214 (30%), Gaps = 33/214 (15%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V       ++LAR+         T       +  G     +        +   + + 
Sbjct: 111 VDYVVKPIRAQEVLARLHTHARNARITRMARDAVDVAGMGVVFVDTRGRIAWRSPQAAL- 169

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  +  +          V                      A +      +      
Sbjct: 170 ------WLHALE-------DPVSPGLLPQSL------------EAALMAGAAIVIGTATG 204

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +R+ +  L           L E  LL A Q +           +  LT RE E L+W+++
Sbjct: 205 MRLSVRNLGA-------AALGETMLLFAMQRDGTAGASSARLAEAALTPRETEVLSWLAK 257

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           GKT+ +I  ILG S  TVN ++  I  K   +TR
Sbjct: 258 GKTNRDIGEILGTSPRTVNKHLEHIFEKLGVETR 291


>gi|284041551|ref|YP_003391891.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945772|gb|ADB48516.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 243

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 75/230 (32%), Gaps = 18/230 (7%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R        V       + L  ++     +         T   G     ++        
Sbjct: 26  VRRGPVTVVVVDPHAPVREGLPPLL-ARDGIDVV-----ATAATGDGAEAVIGHHAPDVA 79

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            +   ++      L+R +A         V+               ++            +
Sbjct: 80  LVALDLADVDGIVLLRRLAQRG--SRSAVVLY------TDADDPQQSAVALHAGAAGVIA 131

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               +A +   L  +         +   ++ +     + +    D+   +   L+  E+ 
Sbjct: 132 KRRSIAELSNALRAVAAGRLWF--NEPGDLPMPPRRLSPLL--TDLRERRSSALSSAELR 187

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L  ++EG +++E A +L +S +TV  ++ ++MRK    +R+ A+A A+R
Sbjct: 188 VLALVAEGSSTEEAAELLSLSPHTVRTHLRNVMRKLEASSRAHAVAIAIR 237


>gi|271966006|ref|YP_003340202.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509181|gb|ACZ87459.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 201

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 60/229 (26%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R      +    + LA ++ L+  +     + +     G                +D  
Sbjct: 2   IRVLLAEDMSMLREALAALLALEDDIEIVAEVGS-----GDVIVPTALRTRPDVAVIDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +           L     L               +     +       
Sbjct: 57  LPGMDGLSAAAELHER--------LPECRALILTGVGRPGSLRRAMSSHVAGFMVKDSRP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   GR++     +    +                    LT RE E L   
Sbjct: 109 KELIEAIRTVAGGGRVVDPQLAFAALNVQG----------------SPLTERESEVLRLT 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G    EIA  +G+S  TV NY+AS + K   + R  AI  A     +
Sbjct: 153 ASGAEPPEIAARIGLSYGTVRNYLASSVTKLNARNRVDAIRIATEAGWI 201


>gi|300022898|ref|YP_003755509.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524719|gb|ADJ23188.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 62/221 (28%), Gaps = 24/221 (10%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       + L R+                          +   +      LD  +   
Sbjct: 5   IVDDHGVVREGLKRLFVAHFDAQVLEAAEI------EEGLAIYARERPDIVVLDLNLEGA 58

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L+R +       + +  +          H     +    G    Y S +  V  + 
Sbjct: 59  GGLELLRRVQS-----FDSGARVVVFSM---HHEPIYAVRALRGGARGYVSKSAPVEELI 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    + I RD    I +          S          L+ REVE L  + +GK
Sbjct: 111 AAIKKVRGGEQYIDRDLASRIAV----------SQISTDDPLQSLSIREVEILRMLGQGK 160

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +   I+  LGI+  TV N    +  K      +  I  A+ 
Sbjct: 161 SMTAISESLGIAYKTVANICTQMKVKLGVDRTADLIRLAIE 201


>gi|134291732|ref|YP_001115501.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134134921|gb|ABO59246.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 212

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 70/238 (29%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            ++L          + ++  R+     +  L                 G +  +  + + 
Sbjct: 3   KVLLAERHAITRDGIRYILQRTGEYQVVRELSD---------------GDALIVAAKNES 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F    +D     +   +L+  +          +L   ++             +      +
Sbjct: 48  FDVAIVDLTSLGNRSIELISQLVACAPKMR--ILALCSK------AEPTRAKSVFCAGAS 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +     A +   +  +    + +       I                       LT 
Sbjct: 100 GFVTKDSTAAELVQAIHAVLAGHKYMSAQVAECIV--------RTIDIPPDAPLHTRLTE 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++ G    +IA  LG++  T++ Y A ++ K   +  +  I YA+   I+
Sbjct: 152 REGEVLKRLAYGDGISDIAKDLGLNSKTISTYKARLLAKLDLRNDAALIRYAIEQQII 209


>gi|300024936|ref|YP_003757547.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526757|gb|ADJ25226.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 219

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 10/189 (5%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
                A+   L   D       D  +      + +  +  +     Y  ++         
Sbjct: 38  AATFDAALDRLSELDGIGLALFDLAMPGVSGPESLGVIKET-----YPDVRVAIVSG--- 89

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                + +   A     Y   +     I   L  +      + R    +   +AA     
Sbjct: 90  SEERSDVLKAVATGLGGYVPKSLQDDEIVAALRDILDGRIYVPRFMTSQGSTVAARVLPE 149

Query: 173 FKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          ++ R+ + L  +  G ++ EIA  L I+  TV  ++A++      
Sbjct: 150 PAEKASASSATASKPISPRQRDVLECVRRGLSNKEIARELEIAEGTVKIHLAALFSHFGA 209

Query: 231 KTRSGAIAY 239
           + R+     
Sbjct: 210 RNRTELATR 218


>gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142]
          Length = 90

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 41/69 (59%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +     L+GRE++ L  +S G T+ EIA  L IS+ TV+N+I++I+ KT T+ R  
Sbjct: 2   TSAKFQNPVSLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVE 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|157961557|ref|YP_001501591.1| two component LuxR family transcriptional regulator [Shewanella
           pealeana ATCC 700345]
 gi|157846557|gb|ABV87056.1| two component transcriptional regulator, LuxR family [Shewanella
           pealeana ATCC 700345]
          Length = 210

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 64/238 (26%), Gaps = 43/238 (18%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  + +  +  ++ L  ++  +  +                                
Sbjct: 16  TIIIADDHQIVSEGIARLVEKNYQVQSIT--TNAEELIQAAKQF---------------Q 58

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +        +  +  +         +    +   +               +
Sbjct: 59  PDIIITDISMPGMQLNQTLGLLKRT--------CKEAKIICLTMHDEAEILQAAFEYGAD 110

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y         +   L  +    + +                         + +   LT 
Sbjct: 111 GYIVKHQAGFELLQALETVLAGKQYVS------------------AELQEKFNQKTVLTA 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R+++ L  +++G ++ +IA+ L IS  TV  +   ++ +      S  +AYA   N++
Sbjct: 153 RQLDILKLLAKGMSAKKIALSLNISAKTVEYHKYKMIEQLDLDNASSLVAYAHSRNLI 210


>gi|331001433|ref|ZP_08325053.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
 gi|329568315|gb|EGG50126.1| putative transcriptional regulatory protein FixJ [Parasutterella
           excrementihominis YIT 11859]
          Length = 218

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 23/182 (12%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A  +L           LD  +       L + + + E        +    +F      + 
Sbjct: 52  AEDYLASENVQIGCLILDVRMPGLSGLQLQQKLEILE--------REIPIIFVTGHGDVD 103

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +         +     D  R++  +                    L  +  +  +  +
Sbjct: 104 MAVLALKHGAQDFMLKPVDPQRLKGAVFQACQSD-------------LLHFLRSQKEEAE 150

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE E    +++G    +IA  LG S  TV  + A I  K   KT +   
Sbjct: 151 REATSS--LSQREREVAQLLAQGLLYKQIAERLGCSERTVKFHKARIAEKLGVKTSAEIA 208

Query: 238 AY 239
             
Sbjct: 209 LR 210


>gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 208

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 35/222 (15%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYA--LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
             R  L A +              A  + E  G    +++   L     ++ +      +
Sbjct: 20  LVRGALAAVLGRESDLKVVAECARADEVLEVSGGPEVVVLDPLLPGAIGMEELCGRLEGY 79

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L+  +   +       L    +                        +       +   +
Sbjct: 80  ALLMLIERDDGGSISLALAAAKQSAKV-----------------GVMTTDASPDDLVDAV 122

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +        + L A                D  LT RE E L  I  G T+ 
Sbjct: 123 REVADGRPVFDVS----LALAALRAG------------DNPLTERECEVLRLIGTGATAQ 166

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A IL +S  TV NY++ I+ KT  ++R  AI  A     +
Sbjct: 167 EVAQILCLSPGTVRNYLSRILSKTGARSRIEAIRKAQDAGWI 208


>gi|189466603|ref|ZP_03015388.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
 gi|189434867|gb|EDV03852.1| hypothetical protein BACINT_02978 [Bacteroides intestinalis DSM
           17393]
          Length = 275

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 16/123 (13%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KD 183
                      I   L     K R            +  + +N+  S           KD
Sbjct: 157 GVVLKDNSKEEILSALQCASRKER-----------FICNHVSNLLLSGSSVAPARPVPKD 205

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA++ 
Sbjct: 206 DLLTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAMKA 265

Query: 244 NIV 246
            IV
Sbjct: 266 GIV 268


>gi|171316805|ref|ZP_02906016.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171098063|gb|EDT42879.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 254

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 29/234 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +     S +  +      +  +     +      + +                
Sbjct: 6   IRVILADDHPTVISGLKAVLAPHKTVDIVATASNSTELIAALDS---------------H 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D ++ +    D +  +    +            +   +        +      
Sbjct: 51  HCDVLVSDYVMPNGDFGDGITLLLFLRRRYPD-----TRIVVLTMMDNPGVIRSLLKLGI 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               S +  V  +   +   +  GR             +     +      H  +   LT
Sbjct: 106 QCILSKSDSVNHVLTAIHGAYASGRYFSPSV-------SEVAWQVDVESGSHPNRA--LT 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            RE E +     G T +EIA  L  S+ T+++  ++ M+K    + +  + YA+
Sbjct: 157 TREEEVVRLFVSGLTVNEIASRLKRSKQTISSQKSNAMKKLGIDSDTDLVKYAM 210


>gi|310826620|ref|YP_003958977.1| salavaricin two-component response regulator [Eubacterium limosum
           KIST612]
 gi|308738354|gb|ADO36014.1| salavaricin two-component response regulator [Eubacterium limosum
           KIST612]
          Length = 204

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 66/239 (27%), Gaps = 42/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI+L  +       +  +      +     L         +  L               
Sbjct: 1   MNILLIDDHALFAKSLEIVLADMPEIESFTTLQNPSEAAAHIRRL--------------- 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    D +     S   K +  L+     F   +              
Sbjct: 46  HPDILLLDINLDTVSDVDGIAL--ASGLKKEFPGLKLV---FLTGYDLPVYRHAAEKLEA 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   D  R+   L+ +     +  R              N +           ELT
Sbjct: 101 CGFLNKNLDPDRLLESLIQINKGVPVFPRA-------------NEYIE---------ELT 138

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             E + L  +SEG     IA IL  S  T++N+I  I  K    +   A+   ++   +
Sbjct: 139 ATETKILQLLSEGYKRKAIAEILFSSERTISNHIQHIFDKLDVSSSLEAVTKGIKLGYI 197


>gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 261

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 6/186 (3%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L ++ K D ++                 +     L     +      T     T  
Sbjct: 57  AALQLCEQVKPDVVLLDSALDPNCHL--TKLLNAGDPALILVILIRD-ANRTQQYLATAI 113

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL---LAAYQANMFKSYDVHW 180
           A   +     + D  R+   +     + R I              AA + ++        
Sbjct: 114 AAGAHAIVPRSIDSRRLAEAIRRAHSERRYIDPALAALTARPKRTAAPKGDLAHDSPPAP 173

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE + L  ++EG  +  IA +L +S  TV  ++ SI+RK + + R+ A+  A
Sbjct: 174 RGAMPLSRREYQVLQLVAEGLENSAIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIA 233

Query: 241 VRNNIV 246
            R+ I+
Sbjct: 234 FRSGIL 239


>gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
 gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp.
           20_3]
          Length = 193

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +L  D       L           ++ + E             S +     + +L+ RE
Sbjct: 74  TALLIDSTEEHGALSSTNRITLRSSQETIIEQ---LQQLFTSDSSGNTTTENNKDLSSRE 130

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT SG   YA+ N I+
Sbjct: 131 VDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNGII 186


>gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 255

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKS----YDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            +I  D   E  ++ ++  N         D+    D  LT RE+E L  + +G  S EIA
Sbjct: 155 SVIDVDASHESEIIKSHLYNFKTGEQIFIDLSDTLDEPLTNRELEVLRLMKQGLLSKEIA 214

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             L +S NTVN +  +I++K        A+ +A R  +
Sbjct: 215 NTLKVSINTVNTHRQNILQKLKANNSIEAVNFAQRLGL 252


>gi|281419800|ref|ZP_06250799.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
 gi|281406176|gb|EFB36856.1| transcriptional regulator, LuxR family protein [Prevotella copri
           DSM 18205]
          Length = 318

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +     D +L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 INQTPMSDEQLSDREKDVIVALVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|254388791|ref|ZP_05004023.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702510|gb|EDY48322.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 264

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 64/237 (27%), Gaps = 8/237 (3%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   + ++ +++  +       ++        +          +      AL +  G   
Sbjct: 1   MGVSVIRIRVLVVDDHRIFAESLAAALAAEPDVEVAAAGSGPAALRCLERALADGRGFDV 60

Query: 61  FLLVRWDLFQEQKLDSI---VSSDWPFDLVRCMAL--SEKDKYYNVLQRPTELFCPVFHT 115
            L+         +  ++   V+   P D    +    +      +V      +       
Sbjct: 61  MLVDADLGAGGGRPQAVRAPVARAVPDDGDEGLVDGITLVAGVRSVHPAVRTVVLAEKDD 120

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                         + +    + R+   +  +      +    L  +             
Sbjct: 121 PRRAALALQAGACGWVAKDCSLQRLLAVIRGVLRDETHLPPALLTGVLRELTAARKHRTE 180

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            +        LT RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 181 SERLVES---LTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 234


>gi|190890234|ref|YP_001976776.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190695513|gb|ACE89598.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 215

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q+  I++  +       +       +    ++                    A+     
Sbjct: 1   MQEQTIIIADDHPLFRDALRQAVIGMEGRQSIVEAGD--------------FAAARTAAG 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F  +  +                 +                
Sbjct: 47  AHPDADLMLLDLAMPGVSGFSGLMALRAE--------FASLPIIIVSASDDATTIRRALE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR  +  +         +   +                    +  
Sbjct: 99  LGASGFISKSSGIEDIRRSIQTVLAGDI-ATPENYRDGQ-------EQDPDVADLIHRLH 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   LT ++EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+ 
Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAVI 204


>gi|31790492|emb|CAD56670.1| putative regulatory protein [Citrobacter sp. Fec2]
          Length = 216

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +  D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVADDEERVVNGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|229592530|ref|YP_002874649.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229364396|emb|CAY52185.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 830

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 7/237 (2%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D +R      +P        ++       W  +  A          L        +Q  
Sbjct: 595 RDAERLMQQRQVPETVYRAVLLLV--SGHFWLQQGRAELTAEAVRRVLRHFRGPLAKQAP 652

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRP-----TELFCPVFHTLPENITPPAGMDNR 129
            + +      + +  +A  +       + R      T     +     E       +  +
Sbjct: 653 PATLELIPRLEYLLVLAEVKLGCAEQPVARLSALLETTHQRGMLCLETELHLVLGEVAWQ 712

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                     ++ GL L            L         +  M          D  L+ R
Sbjct: 713 LGDAALARRSLQTGLELAGRCQVQQAIRELRLRSPGLLSELGMEPQASTPGAVDNPLSQR 772

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I+ G ++ EIA  L IS +TV  +   I  K   + R+ A+A A    ++
Sbjct: 773 ELEVLQLIALGNSNLEIADRLFISLHTVKTHARRIHSKLGVERRTQAVAKAKALGLM 829


>gi|221126751|ref|XP_002164776.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 202

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 11/137 (8%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
             L               A     Y       + + + +  +    R I  D        
Sbjct: 66  RTLVVTARMDAGSVRAALALGATGYVPKNESSSELLLAIRRVAQGRRYISND-------- 117

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
               A++F    V    + +LT  E   L  + EG TS EIA+ L IS  TV  +  ++ 
Sbjct: 118 ---IASLFVDDSVTEATEIKLTNSETTILQLVGEGLTSREIALKLNISEGTVRKHRENLR 174

Query: 226 RKTATKTRSGAIAYAVR 242
            K   +  +   AYA+R
Sbjct: 175 SKLGIRNSAEMAAYAIR 191


>gi|254468811|ref|ZP_05082217.1| two component transcriptional regulator, LuxR family [beta
           proteobacterium KB13]
 gi|207087621|gb|EDZ64904.1| two component transcriptional regulator, LuxR family [beta
           proteobacterium KB13]
          Length = 199

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 43/238 (18%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N++L  + +   S +  L +  +   ++   D                G   + L + + 
Sbjct: 3   NLLLVDDHKIVRSGLKTLLSDLNF-DQIDEADS---------------GRVAYSLAQENS 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           +    +D  +      D +  +      +          L   +  +             
Sbjct: 47  YSLIIMDISMEGMSGLDALSKIINRLPKQ--------KILILSMHDSDLVIEKAKKLGAM 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + + +     +   +  +   G                   N F      + +  +L  
Sbjct: 99  GFVTKSDISDNLFQAVEHILNGG-------------------NFFPETKASYNQLNQLNE 139

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E    I+ GK+   IA  + IS+ TV NY  SI +K            AV  N++
Sbjct: 140 REFEIFKMIASGKSIKNIAADMNISQKTVANYQTSIKQKLEIDNPIDFYKLAVELNLI 197


>gi|146311212|ref|YP_001176286.1| DNA-binding transcriptional regulator CsgD [Enterobacter sp. 638]
 gi|145318088|gb|ABP60235.1| response regulator receiver protein [Enterobacter sp. 638]
          Length = 216

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 14/198 (7%)

Query: 48  RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---- 103
           +  AL +++  S  L  +    Q    D +  S   FD++            N+ +    
Sbjct: 22  QATALLQHLKQSLCLNGKLHNIQRSFDDIVPGSIILFDMMEADKKLIHYWQDNLSRKNNN 81

Query: 104 -RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
            R   L  P  +   +  + P    N    +T D   +  GL  +        +      
Sbjct: 82  IRALLLNTPDEYPFRDIESWPH--INGVFYVTEDETHVVEGLQGILRGECYFSQK----- 134

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS NTV  ++ 
Sbjct: 135 --LASYLITHSGNYRYNSSESALLTHREKEILNKLRIGSSNIEIARSLFISENTVKTHLY 192

Query: 223 SIMRKTATKTRSGAIAYA 240
           ++ +K A K R+ A+++A
Sbjct: 193 NLFKKIAVKNRTQAVSWA 210


>gi|108762123|ref|YP_628591.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK
           1622]
 gi|108466003|gb|ABF91188.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK
           1622]
          Length = 209

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
               + + +   L+ +     +           LA  +A    S          LT RE 
Sbjct: 100 FRDAEPSALVAALLSVARGLTVFDPA-------LAELRATPRASLPAQATAPDALTPRER 152

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  ++EG ++  IA  L IS +T   ++ +++ K   + R+ A+  A +  +V
Sbjct: 153 EVLGLLAEGLSNKAIADRLDISEHTAKFHVNAVLAKLGVQRRTEAVVRAAKLGLV 207


>gi|87199633|ref|YP_496890.1| two component LuxR family transcriptional regulator
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135314|gb|ABD26056.1| two component transcriptional regulator, LuxR family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 218

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 62/219 (28%), Gaps = 32/219 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGA--------SHFL-LVRWDLFQEQKLDSIVSSDWPFDL 86
           +  +D        +  L    G           FL  V   +     +D  +      ++
Sbjct: 7   VHVVDDEEGVRRSLDFLLRTTGYNVQCWIDGDTFLKDVDGSVPACVLMDIRMPGSSGLEI 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              M     D    V+             +   +         +    F   ++   +  
Sbjct: 67  QEQMPEHGLDF--PVI------VLSGHGDIHSAVRAMKAGAVDFVEKPFSRDKLLDAIAN 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            F +      +   E  + A                   LT RE E L  ++ G  +  I
Sbjct: 119 AFQRVE--NGEAAREKAVSAQTLVAR-------------LTSREQEVLEGLACGYPNKTI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  LGIS  TV  Y A+IM K    + + A+  A    +
Sbjct: 164 AYDLGISPRTVEVYRANIMTKLKVPSFADALRIAFTAGL 202


>gi|71279910|ref|YP_266947.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71145650|gb|AAZ26123.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 219

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +  V  I   ++ +      +      +             S      +   
Sbjct: 101 GAAGFVPKSTPVDDIYSAIVAVLSGDTWLPASFEQK---------QRDNSDGDIAERVAS 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           LT ++   L   ++G  + +IA  L +S  T+  +  +I RK   + R+ A+ 
Sbjct: 152 LTQQQYRILMMFAQGMLNKQIAYDLNVSEATIKAHATAIFRKLDVRNRTQAVI 204


>gi|17232470|ref|NP_489018.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17134116|dbj|BAB76677.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 24/233 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWT-MRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVS 79
             +  D+   +  +          M  + EY G  H+ +   D       + Q + ++  
Sbjct: 2   PISLHDVFHAIANIRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSIPAVCL 61

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
              P   V    +          ++   +  P             G  +          R
Sbjct: 62  ESNP---VGRYVVERH---APAHEQL--ILTPEDWKDF-CPRHDHG--HVMTGPIICDGR 110

Query: 140 IRIGLMLLFP-KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVEC 193
           +   L             + L ++  L  + +    +   +           LT RE++ 
Sbjct: 111 LIGTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQI 170

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +++G T+ EIA  L I++N+V   +  + RK     R+  +A  +++ ++
Sbjct: 171 AELVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR-LQDQLI 222


>gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis
           raciborskii CS-505]
          Length = 97

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   TTSESRTPVTLSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVA 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|302868454|ref|YP_003837091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302571313|gb|ADL47515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 256

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 71/242 (29%), Gaps = 35/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++   +++    +     V  +      L+ +     +V               +   + 
Sbjct: 23  VRPTTLMIVDGHDLIRHGVRQILETEQDLSVVAEAGDSV---------------TAVTVS 67

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +    P   VR +     D           +   +            
Sbjct: 68  MAVRPDVVVLDIEIPGGDPVGTVRRIREGSPD--------TAVIILSMLDGPELVRDLLE 119

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   +     +   +  +      +                +      V+  +D 
Sbjct: 120 VGVRGYLHKSVARHDLVSAVRAVSRDRARV------------VLGVSRSSLDHVYGRRDE 167

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L   +EG ++ +IA  L ++  TV  ++ +I  K +  +R  A+  AV  +
Sbjct: 168 VLSPRELEVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAVNKAVAAS 227

Query: 245 IV 246
           I+
Sbjct: 228 II 229


>gi|260460262|ref|ZP_05808514.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259033907|gb|EEW35166.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 242

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 68/230 (29%), Gaps = 32/230 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR---------WDL 68
           QR++ VS           +I +D   S    +  L   +G                  D 
Sbjct: 9   QRSTPVSRQRNAEPQQPLVIIVDDDASVREALSELILSMGFEPVCFASTRELLDADVLDS 68

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      DL   +A +   K   ++      F      +P  +        
Sbjct: 69  PGCLILDVRMPGASGLDLQHHLASNGNPK--PII------FLTGHGDIPMTVQAMKAGAV 120

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +       +   ++           D +                   +  +   LT 
Sbjct: 121 DFLTKPVRDQTLLDAVIAGIAVDAKRRADAVV---------------VKRNIERVETLTP 165

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           RE E L  ++ G+ + +IA  LGIS  TV  +  ++MRK    +    I 
Sbjct: 166 REREVLHEVARGRLNKQIAFDLGISEVTVKLHRGNVMRKMEAASIGELIR 215


>gi|188995237|ref|YP_001929489.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
 gi|188594917|dbj|BAG33892.1| probable transcriptional regulator [Porphyromonas gingivalis ATCC
           33277]
          Length = 199

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              + E+  L           +    +   LT RE E +  + +G T+ EIA  L +S +
Sbjct: 102 HATVEELRQLLERLYQKTLEPEESGEEQQTLTNREKEIVVGVVKGMTNKEIAEELFLSTH 161

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV  +  +I +K    + SG   YA+ N +V
Sbjct: 162 TVITHRRNIAKKLQIHSPSGLTIYAIMNKLV 192


>gi|94311812|ref|YP_585022.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93355664|gb|ABF09753.1| Response regulator VsrC transcription regulator protein NarL-family
           [Cupriavidus metallidurans CH34]
          Length = 219

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 63/215 (29%), Gaps = 12/215 (5%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
               L    D    +     T      M        G++   L   +  Q  + D ++  
Sbjct: 4   AAPTLLVVDDHPMALSG--TTAFLAEVMPDVAVHSAGSAKEALHSLN--QGLRPDIVLLD 59

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
            W  D     A+        V+     +F     T        A     +     D    
Sbjct: 60  IWLNDGTGFDAMQSFKT---VIPGARFIFMSAEATPEIVGRARALSACGFVGKHLDANAF 116

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +         D      L    Q+            +  LT R+   L  + EG
Sbjct: 117 TAAVRKVLAGDTSFPSDE----ALSGRSQSFGPAHGIPVTPAELGLTPRQGSVLALVLEG 172

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +  IA  LG++ NTV  ++++I+++   +TR  
Sbjct: 173 LPNKVIARKLGLTENTVKEHVSAILQRLGVRTRMQ 207


>gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 478

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-------ARIRIGLMLLFPKGRIIL 155
           ++       V  TL               S+  D+       A +   +  +        
Sbjct: 317 RKLRTKSGAVLDTLVFAEAITLEGKPGLLSMFHDITLRKQTEAELLAAIDAVMQDATWFG 376

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           R  +  +      +A    + +       +LT RE + L  I+EG+ ++EIA+ LG+S+N
Sbjct: 377 RSVVERL-----LRARRGATAEAPGATLGDLTARERQVLELIAEGQKNEEIALALGLSKN 431

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           TV NY+A++  K   + R+ A+ +A    ++
Sbjct: 432 TVRNYVANLYAKIGVQGRAEAVIWARERGVI 462


>gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
 gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
 gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
 gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
 gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
          Length = 225

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
                +  D+  +  G+  +      + R    E  L        +++ +         +
Sbjct: 107 AGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYIL-------HYRAGNSVVTSQMYAK 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 160 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 214


>gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
 gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)]
 gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426]
 gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80]
 gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9]
 gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21]
 gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33]
 gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286]
 gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236]
          Length = 214

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
                +  D+  +  G+  +      + R    E  L        +++ +         +
Sbjct: 96  AGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYIL-------HYRAGNSVVTSQMYAK 148

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 149 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 203


>gi|281421139|ref|ZP_06252138.1| transcriptional regulator [Prevotella copri DSM 18205]
 gi|281404674|gb|EFB35354.1| transcriptional regulator [Prevotella copri DSM 18205]
          Length = 212

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                  +  I+  +       R + +  +            +  +      +   LT  
Sbjct: 100 VLLKECSLMEIKEAIRFCVASNRFVCQRMM-----------EVLLAPKQEEQEKINLTKT 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G T+ EIA     S +TVN +  +I RK        A  YA+R  +V
Sbjct: 149 ETEILKDIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEATKYALRAGLV 205


>gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
 gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226]
          Length = 224

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
                +  D+  +  G+  +      + R    E  L        +++ +         +
Sbjct: 106 AGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYIL-------HYRAGNSVVTSQMYAK 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
                +  D+  +  G+  +      + R    E  L        +++ +         +
Sbjct: 106 AGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYIL-------HYRAGNSVVTSQMYAK 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395]
 gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
 gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80]
 gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52]
 gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587]
 gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51]
 gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457]
 gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33]
 gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39]
 gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2]
 gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2]
 gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395]
 gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101]
 gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27]
 gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1]
 gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93]
          Length = 224

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
                +  D+  +  G+  +      + R    E  L        +++ +         +
Sbjct: 106 AGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYIL-------HYRAGNSVVTSQMYAK 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|323156843|gb|EFZ42977.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli EPECa14]
          Length = 203

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 122 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 181

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 182 FKKIAVKNRTQAVSWA 197


>gi|218549087|ref|YP_002382878.1| transcriptional regulator NarL [Escherichia fergusonii ATCC 35469]
 gi|218356628|emb|CAQ89254.1| DNA-binding response regulator in two-component regulatory system
           with NarX (or NarQ) [Escherichia fergusonii ATCC 35469]
 gi|324113980|gb|EGC07954.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497504|gb|EGC95363.1| transcriptional regulator NarL [Escherichia fergusonii ECD227]
          Length = 216

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 31/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +     + V  L + +  +  +                    G     L     
Sbjct: 8   TILLIDDHPMLRTGVKQLISMAPDITVVGEASN---------------GEQGIELAESLD 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + +  +          V          V +   + +T      +
Sbjct: 53  PDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHEEDVVTALKRGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF-ELT 187
            Y     +   +   L        ++       +           ++      +D  +LT
Sbjct: 105 GYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRANRATTERDVNQLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  A  +  +  I
Sbjct: 158 PRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 215


>gi|296115546|ref|ZP_06834175.1| response regulator receiver protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977906|gb|EFG84655.1| response regulator receiver protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 203

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 62/218 (28%), Gaps = 32/218 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF---------QEQKLDSIVSSDWPFDL 86
           +  +D   +    +  L    G +       D F              D  +      DL
Sbjct: 7   VHVIDDDEAVRESLAFLLLASGYTARTYASADEFLSILDRIEHGCVVTDIRMPGMDGLDL 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           V  +          V      +       +P  +    G    +    FD   I   +  
Sbjct: 67  VSHLQD--------VRPVLPVIVITGHADVPLAVQAMKGGARDFIEKPFDDHSILEAVAS 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                  I   R                   V   +   LT RE + L  + +G+++  I
Sbjct: 119 ALQSDGEIPAGRTP---------------AHVVRQRIAVLTNRERQVLRGLVDGQSNKAI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L IS  T+  Y A++M K   +T S  +  A+   
Sbjct: 164 ARELEISPRTIEIYRANLMTKMDARTLSELVRMALVAG 201


>gi|172062531|ref|YP_001810182.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171995048|gb|ACB65966.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 203

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 21/217 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D L  ++                   G +   L          LD  +      +L+R
Sbjct: 1   MRDGLRHILETAGGFEIVGEA-----SDGTAALALAERGDADVLLLDLSMPGPTGIELIR 55

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +                 L   +                 Y +     A +   +  + 
Sbjct: 56  LVKTRA--------PALRMLVLTMHAEAQYAARAFKAGATGYLTKDSATAELVQAVTKVA 107

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G  +       +         M             L+ RE++ +  I  G+T   IA 
Sbjct: 108 AGGVYVSPQAAESLARTLRAPVEML--------PHERLSARELDVMRRIVAGQTVTRIAA 159

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            L +S  TV+ Y   I+ K      +  + YAVR+++
Sbjct: 160 ELTLSAKTVSTYKTRILEKMELPHEAALVRYAVRHDL 196


>gi|167741857|ref|ZP_02414631.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 14]
          Length = 280

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 34  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 93

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 94  PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDD 152

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 153 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASA 212

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 213 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 272

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 273 FASARGLI 280


>gi|300786429|ref|YP_003766720.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795943|gb|ADJ46318.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 202

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 56/229 (24%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + L  ++ L+        +       G       R        LD  
Sbjct: 3   IRLLLADDQALVREALCALLALEDDFEVVASVGR-----GDEVVAAAREHRPDVALLDIE 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +A          +     +    F                +       
Sbjct: 58  MPGLDGLAAAAVLAAQ--------VPDCRIVMLTTFGRAGYLRRAIEAGAAGFVVKDAPA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R++                            +  LT RE + L   
Sbjct: 110 DVLADAIRRVRRGERVVDPALA----------------VATLAAGESPLTARERDVLITA 153

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             G T  EIA  L +S  TV NY+++ + KT  + R  A+  A     +
Sbjct: 154 RSGATIAEIASRLYLSEGTVRNYVSAAIAKTGARNRVEAVRMADERGWL 202


>gi|213691377|ref|YP_002321963.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522838|gb|ACJ51585.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 247

 Score = 89.2 bits (220), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 62/231 (26%), Gaps = 17/231 (7%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
            NI+L  + +        +  ++  +A +            +  L    G          
Sbjct: 2   TNIMLVDDLQYARLGYKLMLGKASDIAIVAQAGDGRQAIAEIERLESAGG---------P 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +         R +        +  +          +              
Sbjct: 53  LPDVVLMDVRMPVMDGITATREITR-----RWPAIHVL---ILTTYDEDDYAYGGLDAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A ++  +  +     ++      +I      +    +           L 
Sbjct: 105 SGFLLKDASAAAVKDAIHAVANGDAVVTPRITRQILEHGMPRPTAGREQQKLRDSFAALP 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            R+ E  T I+EG T++EIA  L +   T+   I+ I+       R+    
Sbjct: 165 PRQREICTLIAEGMTNEEIARKLVLEPATIRRTISRILFTLQLHDRTQIAV 215


>gi|330966354|gb|EGH66614.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 207

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 28/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R       P   + + R I      +   +   L E +  +       D      LD   
Sbjct: 4   RIIVADDHPLFREGMLRTIERLLPEAVIEQAGNLNEVLTLAR----SGDEVDTLILDLRF 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +  +            +R + +   +           +   + +     D  
Sbjct: 60  PGLNSMQAIAELRNE--------FRRTSIIVVSMVDDPETIAQVMSNGADGFIGKNIDPQ 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   ++ +     ++             Y++      +        LT R+ + L  ++
Sbjct: 112 EITESIVAIRQGEVVV------------KYKSEGSIFNESAVNALSPLTTRQKQVLGLVA 159

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA----YAVR 242
            GKT+ EIA  LGIS  TV  +++S+++     TRS A A     A+R
Sbjct: 160 AGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAAQFSSLAIR 207


>gi|313903315|ref|ZP_07836707.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466403|gb|EFR61925.1| two component transcriptional regulator, LuxR family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 59/248 (23%), Gaps = 28/248 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D       L   +     +       GA          F    LD  +      
Sbjct: 3   RVLLAEDQALVRDGLRLLLELQGDLQVTAVADGAEAVARAAAASFDVALLDVRMPHMDGI 62

Query: 85  DLVRCMALSEKDK---------YYNVLQRPTELFCPVFHTLPENITPPAGMDN-----RY 130
             +R +                   ++++        +          A           
Sbjct: 63  ACLRRLQALRPQMPVLMLTTYDDDRLVRQCLAAGAAAYLLKDMAPEDLANAIRLVVYGGG 122

Query: 131 CSLTFDVARIRIGLML---LFPKGRIILR-----DRLWEIGLLAAYQANMFK----SYDV 178
                    +             G  +           + G          +    S   
Sbjct: 123 LIPGDLAGVLARAASTGSAAGGTGSDMPPGRGAGRVRRDAGTPTGAPPPSSRKDALSRPA 182

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LT R+VE L  ++ G ++ EIA  L +S  TV N ++ I  +   + R  A+ 
Sbjct: 183 PAEQGEPLTPRQVEVLQLLARGVSNREIAARLHLSEGTVKNLVSEIYARLQVRDRVQAVL 242

Query: 239 YAVRNNIV 246
            A     +
Sbjct: 243 RA--RGWL 248


>gi|56965096|ref|YP_176828.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911340|dbj|BAD65867.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 201

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L+  ++    ++       GAS              +D  +     
Sbjct: 3   QILIAEDQTILRNALESLLNLEKDIHVAGAVPSGASVRSFPGLWELDLLLMDIEMPDGTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + M             R        F              + Y      + ++ + 
Sbjct: 63  LETAKYMKQHGF--------RGKIALLTTFSRPGYIEQAMKLGVDGYLLKDDPIDQLIVA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +     +I       +  L                +   L  RE E L  +  G+++
Sbjct: 115 IRRIVAGEHVISPALSNMLFRL----------------QPNPLNDREQEMLRRVRNGEST 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + IA  + +S  TV NY++S M+K  T  R  A+  A     +
Sbjct: 159 ETIASAMHLSLGTVRNYLSSAMQKLETTNRHDALRIAEEKGWI 201


>gi|293409411|ref|ZP_06652987.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469879|gb|EFF12363.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 216

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|270264708|ref|ZP_06192973.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041391|gb|EFA14490.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 210

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 15/174 (8%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               + +      +V   W  +      L E    Y+ ++                    
Sbjct: 41  CYRHILENGAPRLMVIDFWLSEGTALKLLKELKNQYSKIRFLVVSGD---ENNEIWQKVR 97

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               + +             +  L    +    +                 +      + 
Sbjct: 98  DAGGHGFVFKNEPPELFAEAVSALMENKKWFPLE------------HEECVNNAHGHLQK 145

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           F LT R+++ L  +  G  +  IA  L IS  TV  +I++I++K    +R  AI
Sbjct: 146 FNLTPRQIDVLIMMMRGFPNKRIAAQLSISEPTVKEHISNILKKIGVNSRVEAI 199


>gi|260911715|ref|ZP_05918291.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634140|gb|EEX52254.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 206

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210
           +     +  I  L  Y     ++        +   L+ RE+E L+ I +G  + EIA  L
Sbjct: 106 VPEEQLVRSILQLEQYAHAHGRNLPPLPHALQMKVLSDREIEVLSLIVQGLINKEIADRL 165

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 166 NIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGYV 201


>gi|170749794|ref|YP_001756054.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656316|gb|ACB25371.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 224

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 13/212 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----LVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +D           + E  G         +V       +    +V  D  F       
Sbjct: 17  VLVIDDHPIVLQGCRRVLEDSGVETIAEATTVVGGYRIFHRLRPPVVICDLTFQGSGMAG 76

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L    +   V      L   + +               Y       A +      +    
Sbjct: 77  LGLIRRIRAVAPETRILVFSMHNDPVIVARALEAGALGYVLKDHASAELFEAFAKVRVGE 136

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             + R    E+ +L           D     + +LT RE + L  +++G++   IA  L 
Sbjct: 137 VYLDRRLATEVAML---------RADARRAPESQLTPREQQILARLAQGRSYGAIAADLS 187

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +S  TV N  + + +K   +T +  I  AV +
Sbjct: 188 VSYKTVTNACSQMRQKLGVRTLAELIHVAVTH 219


>gi|325922351|ref|ZP_08184126.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325547170|gb|EGD18249.1| Transcriptional regulator, LuxR family protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 506

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 10/246 (4%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ E ++   V  R+ E+R +    +     L+        T+       A+ +    + 
Sbjct: 256 MDLEPRRRAEVALRQSEERFAKAFRITPVPTLICN----ADTLQIVEINDAVAQTTQYAS 311

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             ++   + +     +  +       ++  + S  +  Y +     +    +   +    
Sbjct: 312 EDIIGKPIEEIGLFPTRQAYQQFCHALQQ-SGSMLNVEYPI---ARKDGEQLDCLISAET 367

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY--QANMFKSYDV 178
               G+     SL     R R  + L+     ++     +   LL          +    
Sbjct: 368 VSIHGVPCYLLSLMDITDRKRTEMELVAAIEEVMQDASWFSQTLLEKLANVRRANRPSQA 427

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 ELTGRE + L  ++EG    EIA  L ++ NTV N++A++  K    +R  AI 
Sbjct: 428 QSCGIAELTGRERDVLGLLAEGLADKEIAQQLSVAPNTVRNHVAALYSKIDVHSRGEAIV 487

Query: 239 YAVRNN 244
           +A    
Sbjct: 488 WARERG 493


>gi|228910956|ref|ZP_04074764.1| Two-component response regulator ComA [Bacillus thuringiensis IBL
           200]
 gi|228848611|gb|EEM93457.1| Two-component response regulator ComA [Bacillus thuringiensis IBL
           200]
          Length = 213

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     M A          +      F    LD  + +    
Sbjct: 3   RVLIVDDHQIVGEGTKSMIELEEDMQAEYILNEQEALIKSDATPFDVYLLDMNMPNCSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +          ++      +   F+ L  +        +   S +     + + +
Sbjct: 63  ELAQKI--LHIQTDAKIILYTGFEYISQFNLLINS------GISGIISKSASQQELLMAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++    L ++            +      K   LT +E+E L  +S+G ++ 
Sbjct: 115 RAAVNGYTLLPISLLRQLRT-------DDITTQQIENKTALLTQKELEILESVSKGSSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S   V   +  I +K    +RS A+  A+R  I+
Sbjct: 168 QIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGIL 209


>gi|222147461|ref|YP_002548418.1| two component response regulator [Agrobacterium vitis S4]
 gi|221734451|gb|ACM35414.1| two component response regulator [Agrobacterium vitis S4]
          Length = 215

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 58/215 (26%), Gaps = 21/215 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L   +  +D                 A+     +        LD  +     
Sbjct: 11  DHPLFRGALRQAVSGMDGRQDIVE-----AGDFEAARLAADQHPDADVLLLDLAMPGVSG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           F  +  +                 + C                 + + S +  +  IR  
Sbjct: 66  FSGLMALRAE--------FSSLPIIICSATDDCATIRRSLELGASGFISKSSGIDDIRSA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +           + +                    +   LT ++   L  + EG  +
Sbjct: 118 IQTVLNGDIFTPSSYVED--------QEQDPELADIMARLRTLTPQQNRVLGMLCEGLLN 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +IA  L +S  T+  ++++I+ K    +R+ A+ 
Sbjct: 170 KQIAYELSVSEATIKAHVSAILLKLKVDSRTQAVI 204


>gi|148658579|ref|YP_001278784.1| two component LuxR family transcriptional regulator [Roseiflexus
           sp. RS-1]
 gi|148570689|gb|ABQ92834.1| two component transcriptional regulator, LuxR family [Roseiflexus
           sp. RS-1]
          Length = 221

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 34/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V I++  +     S +       + +  +           R+                 +
Sbjct: 2   VRILIVDDHPLVRSGLRAEIEVHEGMQVVAEAGTAAEALERL---------------AVE 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +  +   DL R +                 +    F      +       
Sbjct: 47  RPHVAVIDVRLGDECGIDLGRRIVAQSP---------CAAVLLTAFDWDVYLVRAWEAGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + + + D   +   +       R+   ++   I                       L+
Sbjct: 98  AAFVTKSDDTTALVEAIRGAADGARVFSAEQRTRID----------AWQRNIAAPLALLS 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE   L  + EG T+ EIAV LG++  TV  ++ SI+RK    +R  A+ +A R+ I
Sbjct: 148 ERESAVLRLMVEGATNREIAVELGLAVKTVEAHVHSILRKLRQPSRRAALVWARRHRI 205


>gi|298247008|ref|ZP_06970813.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297549667|gb|EFH83533.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 644

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 8/193 (4%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           E     + LL+ +       L   +       L    A  +  K   V+ R    F    
Sbjct: 459 ERAERLYTLLLPYHGQYHAILIDRLLGSLAILLKDFTAAQDYLKAAEVVAR-RFAFNVEL 517

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
               E     A     + +     +++   L L    G  I   RL              
Sbjct: 518 AWTLEASGNLALARGGFKNSEAGRSQLEAALKLFTQLGDQIQAQRLRNQ-------VRRR 570

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                      +L+ REVE L  ++ GK++ +I  IL IS  TV N+IASI  KT    R
Sbjct: 571 ARKPARSRLPLDLSEREVEVLRLVATGKSNRQIGEILVISERTVINHIASIFNKTGVSNR 630

Query: 234 SGAIAYAVRNNIV 246
           +GA A+A+R+ +V
Sbjct: 631 AGATAFAIRHKLV 643


>gi|98986217|dbj|BAE94501.1| response regulator involved in catabolite control [Acidovorax sp.
           KKS102]
          Length = 208

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 66/241 (27%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R                         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAETFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLIERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    FD   +   +  +                  A      ++      
Sbjct: 96  NTMKKGALDFIQKPFDEEELVGLVERMLDH---------------ARESFAGYQQAASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLSKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|59712981|ref|YP_205757.1| two-component response regulator [Vibrio fischeri ES114]
 gi|59481082|gb|AAW86869.1| two-component response regulator [Vibrio fischeri ES114]
          Length = 209

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   + D+  +   L  +           +               + D    K   
Sbjct: 101 GAFGFIPKSSDMKSLIGALNQILAGDSYFPAGAIKN-----------SAACDDLATKIAA 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|17547174|ref|NP_520576.1| response regulator VSRC transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17429476|emb|CAD16162.1| response regulator vsrc transcription regulator protein [Ralstonia
           solanacearum GMI1000]
          Length = 221

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 12/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            TS +  L    D    +        +  +     +   A         + +  + D ++
Sbjct: 1   MTSSLRSLLVVDDHPLALSGTTT---FLAQALPEIQVHAAIGRRQALALIDEGIRPDVVL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDV 137
              W  D     A+ E        +             PE +          +     D 
Sbjct: 58  LDVWLSDCTGFDAMRELRGKLPEARFAFMSAE----NTPEIVAKAQALGAIGFIGKHADA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +F        +   ++G+      N           +  LT R+   L  +
Sbjct: 114 HAFSQAVAGIFGGDSSFPSED--DLGMANGK--NGASHGIPITPAELGLTPRQGSVLALL 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG  +  IA  LG++ NTV  ++++I+++   +TR   I+   R  +
Sbjct: 170 LEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMERFRL 217


>gi|333003004|gb|EGK22558.1| regulatory protein sdiA [Shigella flexneri VA-6]
          Length = 208

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 13/198 (6%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R  +L R   ++        +    + +   ++ L         +      +++P   V 
Sbjct: 10  RRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVLFTRPKVAFYTNYPESWVS 69

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARI 140
                       VL         +                    G+            R 
Sbjct: 70  YYQAKNFLAIDPVLNPENFSQDHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRA 129

Query: 141 RIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLT 195
              L        +  I+  +   ++ LL           +       +   + RE E L 
Sbjct: 130 LGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILK 189

Query: 196 WISEGKTSDEIAVILGIS 213
           W +EGKTS EIA+IL I+
Sbjct: 190 WTAEGKTSAEIAMILSIT 207


>gi|325270893|ref|ZP_08137480.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324986690|gb|EGC18686.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 246

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L     L  + A +  +      ++   LT  E E L  I+ G T+ EIA     S +T
Sbjct: 150 VLHGRRFLCQHAAGLLLTPAETPDRETVKLTKTETEILKEIALGMTTREIAEKRFSSFHT 209

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN +  +I RK    +   A+ YA+R+ +V
Sbjct: 210 VNTHRKNIFRKLGVNSVHEAMRYAMRSGLV 239


>gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
          Length = 193

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            ++  D       L           ++ + E             S +     + +L+ RE
Sbjct: 74  TAILIDSTEEHGALSSTNRITLRSSQETIIEQ---LQQLFTSDSSGNTTTENNKDLSSRE 130

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+ L  I +G T+ EIA  L IS NTV  +  +I  K   KT SG   YA+ N I+
Sbjct: 131 VDVLQLIVKGITNKEIADKLNISLNTVLTHRKNITAKLGIKTVSGLTFYAIMNGII 186


>gi|331646293|ref|ZP_08347396.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
 gi|320196482|gb|EFW71105.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli WV_060327]
 gi|330910850|gb|EGH39360.1| transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli AA86]
 gi|331045045|gb|EGI17172.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M605]
          Length = 216

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|296102946|ref|YP_003613092.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057405|gb|ADF62143.1| sgAB operon transcriptional regulatory protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 216

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T +  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEEENRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|218532794|ref|YP_002423610.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218525097|gb|ACK85682.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 221

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 13/210 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----LVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +D           + E  G    +    +V       +    +V  D  F       
Sbjct: 14  VLVIDDHPIVLQGCRRVLEDAGIETVVEATGVVSGYRAFHRLRPPVVICDLTFQGSGLAG 73

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L+   +   +      L   + +               Y         +      +    
Sbjct: 74  LALIRRMRAIEPETRVLVFSMHNDPVIVSRALEAGALGYVLKDHASNELFQAFERVRAGE 133

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             + R    E+ +L           D     + +LT RE + L  +++GK+   IA  L 
Sbjct: 134 VYLDRRLATEVAML---------RADPRRTPETQLTPREQQILARLAQGKSYGAIAADLS 184

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +S  TV N  + + +K   +T +  I  AV
Sbjct: 185 VSYKTVTNACSQMRQKLRVRTLAELIHVAV 214


>gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3]
          Length = 201

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 60/239 (25%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L ++          L  + + +  +  L                            
Sbjct: 2   IKVLLAQDGRMVRGAFLALLAQENDIVVVAELAAGRELVPAARRF--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D           ++ +           L +   L                   
Sbjct: 47  EPDVAVVDIDTPGHDDLSSIQQIHEE--------LPQTRTLILTSTWRPTIVRRALDIQV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +        ++   +  L    R+I  D                            LT
Sbjct: 99  GGFLVKESPPEKLVSTIRELAAGLRVIDFDLA----------------VSAWQSPPPPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R++E L   + G    EIA  L +S  TV NY++S+  K   +TR  A+  A     +
Sbjct: 143 ERQLEILRLAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKLNARTRMDAVRIAADAGWL 201


>gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
 gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223]
          Length = 224

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
                +  D+  +  G+  +      + R    E  L        +++ +         +
Sbjct: 106 AGVFYIDDDMDTLIKGMSKVLLDEMWLTRKLAQEYIL-------HYRAGNSVVTSQMYAK 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
 gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603]
 gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451]
          Length = 224

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--E 185
                +  D+  +  G+  +      + R    E  L        +++ +         +
Sbjct: 106 AGVFYIDDDMDTLIKGMSKVLLDEMWLTRKLAQEYIL-------HYRAGNSVVTSQMYAK 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT RE + +  +  G ++ EIA  L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|171316907|ref|ZP_02906115.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
 gi|171097907|gb|EDT42726.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MEX-5]
          Length = 224

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 70/240 (29%), Gaps = 40/240 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            QQ+ + +  +DE   + V  L                     R+ A         F   
Sbjct: 9   AQQLIVYVVDDDESMRTAVDMLLRSVGF---------------RVEAFASAQEFLAF--D 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + D+     LD  +       +   +A ++             +F   +  +  ++    
Sbjct: 52  KPDVASCLILDVRLKGQSGLAVQEQIAAADL--------HLPIIFMTAYGDIAMSVKAMK 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +    F    +   +     +      +    + L A Y                
Sbjct: 104 AGAMDFLPKPFREQDMLDAVTTALERDARWRSEHRSLLDLRARYA--------------- 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E + +++ G  + +IA  + +S  TV  +    M+K   ++ +  +  A    
Sbjct: 149 TLSPREREVMAFVASGLMNKQIAAEMNLSEITVKIHRGQAMKKMEARSLADFVKKAEALG 208


>gi|56461253|ref|YP_156534.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56180263|gb|AAV82985.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 216

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 69/228 (30%), Gaps = 29/228 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
             ++  +     + +    + S L + +I          ++                   
Sbjct: 3   RAIIADDHPLFRAAMKQALSES-LESDIIEASSFSQLEQQLQQF--------------PQ 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   LD  +  +     +  +   +      V+    E    +           A   +
Sbjct: 48  IELVFLDLSMPGNRGLTGLSVLRS-QFPDILVVIVSANEDTRVI-------RQAMALGAS 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   +  +   +  +  +      +  + +  + L                 K  +LT 
Sbjct: 100 GYIPKSVPLPEWQTAVTTVLSGDNWL-PESMRTVSLTEPDV-----EMSDFANKLEQLTP 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++ + L  I++G  + +IA  LG+   T+  + ++I+RK     R+ A
Sbjct: 154 QQFKVLQCIADGLLNKQIAYELGVQETTIKQHASAILRKLKCVNRTQA 201


>gi|15801157|ref|NP_287174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 EDL933]
 gi|15830671|ref|NP_309444.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. Sakai]
 gi|26247175|ref|NP_753215.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           CFT073]
 gi|30062564|ref|NP_836735.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 2457T]
 gi|56479799|ref|NP_706950.2| DNA-binding transcriptional regulator CsgD [Shigella flexneri 2a
           str. 301]
 gi|91210188|ref|YP_540174.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UTI89]
 gi|110641216|ref|YP_668946.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 536]
 gi|110805049|ref|YP_688569.1| DNA-binding transcriptional regulator CsgD [Shigella flexneri 5
           str. 8401]
 gi|117623229|ref|YP_852142.1| DNA-binding transcriptional regulator CsgD [Escherichia coli APEC
           O1]
 gi|157155649|ref|YP_001462271.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           E24377A]
 gi|168747192|ref|ZP_02772214.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754516|ref|ZP_02779523.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760623|ref|ZP_02785630.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767694|ref|ZP_02792701.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773880|ref|ZP_02798887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783565|ref|ZP_02808572.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|168799314|ref|ZP_02824321.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|191166943|ref|ZP_03028767.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|193069453|ref|ZP_03050407.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194432391|ref|ZP_03064678.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|195935427|ref|ZP_03080809.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809483|ref|ZP_03251820.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815293|ref|ZP_03256472.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822315|ref|ZP_03262634.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396459|ref|YP_002269887.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918293|ref|YP_002292377.1| DNA-binding transcriptional regulator CsgD [Escherichia coli SE11]
 gi|215486249|ref|YP_002328680.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217328252|ref|ZP_03444334.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218553618|ref|YP_002386531.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI1]
 gi|218557921|ref|YP_002390834.1| DNA-binding transcriptional regulator CsgD [Escherichia coli S88]
 gi|218688993|ref|YP_002397205.1| DNA-binding transcriptional regulator CsgD [Escherichia coli ED1a]
 gi|218694575|ref|YP_002402242.1| DNA-binding transcriptional regulator CsgD [Escherichia coli 55989]
 gi|218704448|ref|YP_002411967.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           UMN026]
 gi|227886606|ref|ZP_04004411.1| LuxR family protein [Escherichia coli 83972]
 gi|237706978|ref|ZP_04537459.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|254792423|ref|YP_003077260.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. TW14359]
 gi|256018703|ref|ZP_05432568.1| DNA-binding transcriptional regulator CsgD [Shigella sp. D9]
 gi|260854523|ref|YP_003228414.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|260867403|ref|YP_003233805.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|261227055|ref|ZP_05941336.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256289|ref|ZP_05948822.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282059|ref|YP_003498877.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|293404327|ref|ZP_06648321.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|293433333|ref|ZP_06661761.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|298380106|ref|ZP_06989711.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300816738|ref|ZP_07096958.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300821183|ref|ZP_07101332.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300899554|ref|ZP_07117793.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300902427|ref|ZP_07120409.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300922561|ref|ZP_07138662.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300935178|ref|ZP_07150204.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300974342|ref|ZP_07172554.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300982659|ref|ZP_07176243.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|301023209|ref|ZP_07187008.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|301051178|ref|ZP_07198008.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|301305026|ref|ZP_07211128.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|301328594|ref|ZP_07221655.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|306814112|ref|ZP_07448285.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|307310181|ref|ZP_07589831.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|309794973|ref|ZP_07689393.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|331652090|ref|ZP_08353109.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331657094|ref|ZP_08358056.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331662440|ref|ZP_08363363.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331667434|ref|ZP_08368298.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331672560|ref|ZP_08373349.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331676827|ref|ZP_08377523.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331682538|ref|ZP_08383157.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332279774|ref|ZP_08392187.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|12514569|gb|AAG55786.1|AE005314_14 putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. EDL933]
 gi|26107576|gb|AAN79775.1|AE016759_49 Probable csgAB operon transcriptional Regulatory protein
           [Escherichia coli CFT073]
 gi|13360877|dbj|BAB34840.1| transcriptional regulator for 2nd curli operon [Escherichia coli
           O157:H7 str. Sakai]
 gi|30040810|gb|AAP16541.1| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|56383350|gb|AAN42657.2| probable csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 301]
 gi|91071762|gb|ABE06643.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli UTI89]
 gi|110342808|gb|ABG69045.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli 536]
 gi|110614597|gb|ABF03264.1| Probable csgAB operon transcriptional Regulatory protein [Shigella
           flexneri 5 str. 8401]
 gi|115512353|gb|ABJ00428.1| probable csgAB operon transcriptional regulatory protein
           [Escherichia coli APEC O1]
 gi|157077679|gb|ABV17387.1| transcriptional regulator CsgD [Escherichia coli E24377A]
 gi|171986605|gb|ACB59284.1| CsgD [Escherichia coli]
 gi|171986613|gb|ACB59291.1| CsgD [Escherichia coli]
 gi|171986621|gb|ACB59298.1| CsgD [Escherichia coli]
 gi|171986629|gb|ACB59305.1| CsgD [Escherichia coli]
 gi|187770420|gb|EDU34264.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018009|gb|EDU56131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999071|gb|EDU68057.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358200|gb|EDU76619.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363208|gb|EDU81627.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368715|gb|EDU87131.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189378335|gb|EDU96751.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC508]
 gi|190903055|gb|EDV62780.1| transcriptional regulator CsgD [Escherichia coli B7A]
 gi|192957201|gb|EDV87650.1| transcriptional regulator CsgD [Escherichia coli E110019]
 gi|194419278|gb|EDX35360.1| transcriptional regulator CsgD [Shigella dysenteriae 1012]
 gi|208729284|gb|EDZ78885.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731941|gb|EDZ80629.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737800|gb|EDZ85483.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157859|gb|ACI35292.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209773728|gb|ACI85176.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773730|gb|ACI85177.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773732|gb|ACI85178.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773734|gb|ACI85179.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209773736|gb|ACI85180.1| transcriptional regulator for 2nd curli operon [Escherichia coli]
 gi|209911552|dbj|BAG76626.1| putative transcriptional regulator [Escherichia coli SE11]
 gi|215264321|emb|CAS08678.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli O127:H6 str. E2348/69]
 gi|217318679|gb|EEC27105.1| transcriptional regulator CsgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351307|emb|CAU97012.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli 55989]
 gi|218360386|emb|CAQ97938.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI1]
 gi|218364690|emb|CAR02380.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli S88]
 gi|218426557|emb|CAR07385.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli ED1a]
 gi|218431545|emb|CAR12423.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli UMN026]
 gi|222032794|emb|CAP75533.1| csgAB operon transcriptional regulatory [Escherichia coli LF82]
 gi|226898188|gb|EEH84447.1| transcriptional regulator for 2nd curli operon [Escherichia sp.
           3_2_53FAA]
 gi|227836810|gb|EEJ47276.1| LuxR family protein [Escherichia coli 83972]
 gi|254591823|gb|ACT71184.1| putative 2-component transcriptional regulator for 2nd curli operon
           [Escherichia coli O157:H7 str. TW14359]
 gi|257753172|dbj|BAI24674.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O26:H11 str. 11368]
 gi|257763759|dbj|BAI35254.1| DNA-binding transcriptional activator CsgD in two-component
           regulatory system [Escherichia coli O111:H- str. 11128]
 gi|281178149|dbj|BAI54479.1| putative transcriptional regulator [Escherichia coli SE15]
 gi|281600449|gb|ADA73433.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2002017]
 gi|284920864|emb|CBG33927.1| probable csgab operon transcriptional regulator [Escherichia coli
           042]
 gi|290761932|gb|ADD55893.1| CsgD [Escherichia coli O55:H7 str. CB9615]
 gi|291324152|gb|EFE63574.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B088]
 gi|291428913|gb|EFF01938.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1412]
 gi|294494087|gb|ADE92843.1| transcriptional regulator CsgD [Escherichia coli IHE3034]
 gi|298279804|gb|EFI21312.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           FVEC1302]
 gi|300297199|gb|EFJ53584.1| transcriptional regulator, LuxR family [Escherichia coli MS 185-1]
 gi|300307124|gb|EFJ61644.1| transcriptional regulator, LuxR family [Escherichia coli MS 200-1]
 gi|300356825|gb|EFJ72695.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1]
 gi|300397133|gb|EFJ80671.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1]
 gi|300405459|gb|EFJ88997.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1]
 gi|300410585|gb|EFJ94123.1| transcriptional regulator, LuxR family [Escherichia coli MS 45-1]
 gi|300421107|gb|EFK04418.1| transcriptional regulator, LuxR family [Escherichia coli MS 182-1]
 gi|300459572|gb|EFK23065.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1]
 gi|300526482|gb|EFK47551.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7]
 gi|300530512|gb|EFK51574.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1]
 gi|300839744|gb|EFK67504.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1]
 gi|300844986|gb|EFK72746.1| transcriptional regulator, LuxR family [Escherichia coli MS 78-1]
 gi|305852749|gb|EFM53197.1| DNA-binding transcriptional regulator CsgD [Escherichia coli NC101]
 gi|306909899|gb|EFN40393.1| transcriptional regulator, LuxR family [Escherichia coli W]
 gi|307553043|gb|ADN45818.1| csgAB operon transcriptional regulatory protein [Escherichia coli
           ABU 83972]
 gi|307627490|gb|ADN71794.1| DNA-binding transcriptional regulator CsgD [Escherichia coli UM146]
 gi|308121277|gb|EFO58539.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7]
 gi|312945603|gb|ADR26430.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313650706|gb|EFS15107.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2a str. 2457T]
 gi|315060319|gb|ADT74646.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli W]
 gi|315253837|gb|EFU33805.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1]
 gi|315287407|gb|EFU46818.1| transcriptional regulator, LuxR family [Escherichia coli MS 110-3]
 gi|315291086|gb|EFU50449.1| transcriptional regulator, LuxR family [Escherichia coli MS 153-1]
 gi|315296668|gb|EFU55963.1| transcriptional regulator, LuxR family [Escherichia coli MS 16-3]
 gi|320189720|gb|EFW64376.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. EC1212]
 gi|320200932|gb|EFW75516.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli EC4100B]
 gi|320637492|gb|EFX07292.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. G5101]
 gi|320643053|gb|EFX12254.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. 493-89]
 gi|320648510|gb|EFX17165.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H- str. H 2687]
 gi|320653825|gb|EFX21899.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659305|gb|EFX26874.1| DNA-binding transcriptional regulator CsgD [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664439|gb|EFX31590.1| DNA-binding transcriptional regulator CsgD [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323175733|gb|EFZ61327.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 1180]
 gi|323190548|gb|EFZ75820.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli RN587/1]
 gi|323379120|gb|ADX51388.1| transcriptional regulator, LuxR family [Escherichia coli KO11]
 gi|323947348|gb|EGB43354.1| luxR family protein Bacterial regulatory protein [Escherichia coli
           H120]
 gi|323953272|gb|EGB49138.1| luxR family protein regulatory protein [Escherichia coli H252]
 gi|323958052|gb|EGB53762.1| luxR family protein regulatory protein [Escherichia coli H263]
 gi|323966982|gb|EGB62408.1| luxR family protein regulatory protein [Escherichia coli M863]
 gi|323976586|gb|EGB71674.1| luxR family protein regulatory protein [Escherichia coli TW10509]
 gi|324007878|gb|EGB77097.1| transcriptional regulator, LuxR family [Escherichia coli MS 57-2]
 gi|324013311|gb|EGB82530.1| transcriptional regulator, LuxR family [Escherichia coli MS 60-1]
 gi|324017459|gb|EGB86678.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3]
 gi|324117387|gb|EGC11294.1| luxR family protein regulatory protein [Escherichia coli E1167]
 gi|326339260|gb|EGD63074.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1125]
 gi|326344780|gb|EGD68528.1| Transcriptional regulator CsgD for 2nd curli operon [Escherichia
           coli O157:H7 str. 1044]
 gi|327253435|gb|EGE65073.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli STEC_7v]
 gi|331050368|gb|EGI22426.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli M718]
 gi|331055342|gb|EGI27351.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA206]
 gi|331060862|gb|EGI32826.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA143]
 gi|331065019|gb|EGI36914.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA271]
 gi|331070203|gb|EGI41569.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli TA280]
 gi|331075516|gb|EGI46814.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H591]
 gi|331080169|gb|EGI51348.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli H299]
 gi|332088801|gb|EGI93913.1| putative csgAB operon transcriptional regulatory protein [Shigella
           boydii 5216-82]
 gi|332092876|gb|EGI97944.1| putative csgAB operon transcriptional regulatory protein [Shigella
           dysenteriae 155-74]
 gi|332102126|gb|EGJ05472.1| transcriptional regulator for 2nd curli operon [Shigella sp. D9]
 gi|332758809|gb|EGJ89125.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 4343-70]
 gi|332759950|gb|EGJ90251.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri 2747-71]
 gi|332762241|gb|EGJ92509.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-671]
 gi|332767834|gb|EGJ98025.1| bacterial regulatory s, luxR family protein [Shigella flexneri
           2930-71]
 gi|333005819|gb|EGK25336.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri VA-6]
 gi|333019711|gb|EGK38984.1| putative csgAB operon transcriptional regulatory protein [Shigella
           flexneri K-304]
          Length = 216

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
 gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109]
          Length = 92

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D     +  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSLDGADPLEISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ N 
Sbjct: 61  RVALLNWAMDNG 72


>gi|107101409|ref|ZP_01365327.1| hypothetical protein PaerPA_01002448 [Pseudomonas aeruginosa PACS2]
 gi|254235065|ref|ZP_04928388.1| hypothetical protein PACG_00946 [Pseudomonas aeruginosa C3719]
 gi|126166996|gb|EAZ52507.1| hypothetical protein PACG_00946 [Pseudomonas aeruginosa C3719]
          Length = 225

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      V+ ++     +D  +      +L R +           L +   LF  +   L
Sbjct: 35  GEEALQAVQREIPSLVIVDLGLPGISGLELTRRLRQR--------LPQLRVLFFSLHDEL 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y +       +   +  +      + +     +              
Sbjct: 87  ALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLA--------CQSWE 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E    ++ G    E+A  LG+S  TV+N+++ + +K    T++  
Sbjct: 139 EQGGAALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAEL 198

Query: 237 IAYAVRNNIV 246
           +  A+ + ++
Sbjct: 199 VHRAIDSGVL 208


>gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
 gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus
           tusciae DSM 2912]
          Length = 278

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 74/220 (33%), Gaps = 4/220 (1%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF----DL 86
           DL          V     +   T  +  +H    R         D ++  D       + 
Sbjct: 56  DLATVGNKAAEAVGTIKSIRQETRVMVLAHEADSRLVEVLAAGADGVLLKDVGASGLVEG 115

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +R +A      +    +   E+   V     E+      +          VA     L +
Sbjct: 116 IRGLARVGAYLHPAAARVVLEVLRSVLAEDREDAACGEALGWDEDQAPAAVAAPTPALAV 175

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
             P G      R            +     D   G    LT RE E L  ++EG+++ +I
Sbjct: 176 HGPAGEGREASRGEAGWDWMVDFESEEDGEDKAPGIVAPLTKREFEVLQLLAEGRSNRDI 235

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S  TV N++ASI+ K   + R+ A+  A+R   V
Sbjct: 236 AKALVLSEKTVKNHVASILDKLVVRDRTQAVLVALRRGWV 275


>gi|194291999|ref|YP_002007906.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225903|emb|CAQ71850.1| putative transcriptional regulator, LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 333

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 59/242 (24%), Gaps = 26/242 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW-P 83
                  L+  +         +  M +    +G              Q         + P
Sbjct: 68  RHGATPGLVTALQAEPTHEGRSAVMQSAIRAIGFDWLGYATAAHVGGQLQPRTFFESYSP 127

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT------------------PPAG 125
                        +      +P     P      +                       AG
Sbjct: 128 PGWRERYFRERYYEIDPRTPQPGTFCLPTVWDADDLAQTPLGNVPPLRRRRFLEDLRDAG 187

Query: 126 MDNR-YCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMF---KSYDVH 179
           + +  + +L        + +  +      R I    + +   +                 
Sbjct: 188 VRSGIFLNLPMPGNNEFVLISFMSGIESRRWIGDSVVGQALAMGLALHEFLTCHVEIPAF 247

Query: 180 WGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G+  E L+  + + L  +++G +  EIA  + +S   V+ ++  +      + R    +
Sbjct: 248 AGRHREGLSDVQRDILACLAQGLSDKEIARRMDMSIFNVDYHMRRLRSHFGVRNRVQLAS 307

Query: 239 YA 240
            A
Sbjct: 308 AA 309


>gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307]
 gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307]
          Length = 92

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  ++   T+ EIA+ L IS+ TV+N++++I  KT ++ R   + +A+ N
Sbjct: 16  IHLSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSN 75

Query: 244 N 244
            
Sbjct: 76  G 76


>gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 243

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLML---LFPKGRIILRDRLWEIGLLAAYQANMFKS 175
             +           L  +   +   L+L          + +         A   A     
Sbjct: 113 ASSGDPAAIRTVLQLKCEDESLHSALILSFIAMHLHAALTQKIPDRSHGEARMPAAETDG 172

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G+ F+ T +E E + W+ EGKT+ EI  IL +S  TV  ++ ++  K     R+ 
Sbjct: 173 VGSADGEGFQFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQ 232

Query: 236 AIAYAVRNNIV 246
           A+A   R  ++
Sbjct: 233 AVAKVSRLGLI 243


>gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
 gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Paenibacillus sp. JDR-2]
          Length = 866

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 3/131 (2%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                      +  +  D  +    L   +     +  +      LL    +    +   
Sbjct: 736 AQACELARPEGFIRIFMDEGQALTPLFERWLSEASLDEEMAAYANLLRERISEGGWTASY 795

Query: 179 HWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              KD    +LTGRE E L  I EG +++EI   L +S  TV  Y  +I  K   K R  
Sbjct: 796 ARMKDNLTVKLTGREREVLRKIGEGLSNEEIGGQLFLSTGTVKKYAYNIYEKLQVKNRVQ 855

Query: 236 AIAYAVRNNIV 246
           AI+ A    ++
Sbjct: 856 AISRAKEMGLL 866


>gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
 gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium
           IMCC1989]
          Length = 271

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV---SSDWPFDLVRCMALS 93
              +           + ++ G  H          E K  S +     +      +     
Sbjct: 42  QHANSIKELFAMYEVIMKHYGFDHLAHAVISDHDELKNGSALGLTVHNELNGWEKHYLEQ 101

Query: 94  EKDKYYNVLQRPTELFCPVFHTLP------------ENITPPAGMDNRYCSLTFDVARIR 141
                    Q                           N      + +       +   ++
Sbjct: 102 NYIAIDLAPQITYSKAGFFTWHDMKQQALSREQSAIFNEAEDFKLYSGVNVSIHNANGVK 161

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQAN---MFKSYDVHWGKDFELTGREVECLTWIS 198
             ++    +    +     +I  L A+Q N   +  +      K   LT +E E L WIS
Sbjct: 162 CVIIAASNQQGFSVNQYTKDIVNLLAHQFNTCFLSLTKHELIQKKIPLTQKEEEILKWIS 221

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +G +  EI   + IS +TV+ Y+ SI +K  T      +  A++  ++
Sbjct: 222 KGLSKPEIGDKMNISSHTVSYYMRSIFKKMGTNNTVSTVIKAIKEELI 269


>gi|311069668|ref|YP_003974591.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870185|gb|ADP33660.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 213

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 15/226 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD--LFQEQKLDSIVSS 80
           +  +    D  A M      +     +        AS   +   D   +    +D  +  
Sbjct: 1   MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGE 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               +L + +                 +    +              +   S T    +I
Sbjct: 61  INGMELSKKILKEN--------PLCKIIVYTGYEVEDYFEEAIRAGLHGAISKTESKEKI 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +  +     ++      ++           K           LT RE   L  + +G
Sbjct: 113 TQYIYHVLNDEILVDFSYFKQLVT-----HQKTKPAAASQNDQDVLTPRECLILQEVEKG 167

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            T+ EIA  L +S+ ++   + SI  K    +R+ A+  A  + ++
Sbjct: 168 FTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL 213


>gi|294146475|ref|YP_003559141.1| NarL-family response regulator [Sphingobium japonicum UT26S]
 gi|292676892|dbj|BAI98409.1| NarL-family response regulator [Sphingobium japonicum UT26S]
          Length = 207

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 61/218 (27%), Gaps = 32/218 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFDL 86
           +  +D   +    +  + +  G +  L                    LD  +       +
Sbjct: 7   IYVVDDDEAIRRSLSFMLKTSGFAVKLFEGGLPFLKEAAGLEPGCVLLDVRMPDMDGLAV 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +                 +       +   +T      + +    F+ A +   +  
Sbjct: 67  QRELRDRGIM--------LPVVIMTGHGDIDMAVTAMKAGASDFIEKPFEKAALLGCVEA 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                             +A          +    +   LT RE E L  + EG  +  I
Sbjct: 119 ARR---------------MAVADRGANARAEDARARLNILTEREREVLDGLVEGLPNKTI 163

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  L IS  TV  + A++M+K   K+ + A+  A    
Sbjct: 164 AYDLAISPRTVEIHRANLMQKLEVKSLAEALRIAFHAG 201


>gi|319900090|ref|YP_004159818.1| two component transcriptional regulator, LuxR family [Bacteroides
           helcogenes P 36-108]
 gi|319415121|gb|ADV42232.1| two component transcriptional regulator, LuxR family [Bacteroides
           helcogenes P 36-108]
          Length = 217

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  + +     V       + + R++     V     + +     G     L+    +  
Sbjct: 1   MREKTKAEMLVVDDHSLIIEGICRLVEKLPEVVVADAVTS-----GEEAVTLIARRDYDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +     F+L+  +            +    +   +   +           N   
Sbjct: 56  YVLDVGMPGMSGFELIVRIREIN--------ENARIIINTMHEEIWMVNRLVQSGVNAVI 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +   + +   +  +                   A  +           +    T RE 
Sbjct: 108 LKSSTASYLIDAVRCVLQGNSYACPR--------FASISRKLCRTSPELQQKDVPTRREQ 159

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E L  +++G  + EIA +L +S NTV  +   ++ K   K     +  AV    +
Sbjct: 160 EVLQAVAKGLNTREIADLLKVSENTVETFRRRLIFKFDAKNAIDMVLKAVSQGWI 214


>gi|218460493|ref|ZP_03500584.1| probable two-component response regulator protein [Rhizobium etli
           Kim 5]
          Length = 215

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q+  I++  +       +       +    ++                    A+     
Sbjct: 1   MQEQTIIIADDHPLFRDALRQAVIGMEGRQLIVEAGD--------------FAAARTAAG 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F  +  +                 +                
Sbjct: 47  AHPDADLMLLDLAMPGVSGFSGLMALRAE--------FASLPIIIVSASDDATTIRRALE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR G+  +         +   +                    +  
Sbjct: 99  LGASGFISKSSGIEDIRRGIQTVLAGDI-ATPESYRDGQ-------EQDPDVADLIHRLH 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   LT ++EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+ 
Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAVI 204


>gi|313888654|ref|ZP_07822319.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845383|gb|EFR32779.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 195

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  +  G T  EIA  L IS  T+ N++A+I  K   K    A   A+   
Sbjct: 130 PLTKREEEILIEVLSGLTKKEIADKLYISERTLYNHLANIYAKLGAKNAIEAYKIALELG 189

Query: 245 IV 246
            +
Sbjct: 190 YI 191


>gi|312884751|ref|ZP_07744452.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367664|gb|EFP95215.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 211

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 19/179 (10%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           F L+  +      LD  +        +      +    Y  L                  
Sbjct: 43  FDLLAKEEPDLLLLDLKMPGANGMSGL-----IQLRCDYPHLPIVVIS---ASEEPAVIA 94

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +   + D+  +   L  +                      A+     +   
Sbjct: 95  QVKRHGAFGFIPKSSDMRALVNALNQVLEGNMFFPET-----------VADFGSEKNRLA 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            K   LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 144 EKIASLTPQQHKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAVIL 202


>gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Acidobacterium sp. MP5ACTX8]
          Length = 162

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 50/119 (42%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   ++ F    I +G  +   +  I     + E+ + A   A    + +    +   +T
Sbjct: 43  SALVAILFAAFGIWLGFRITRNRETIRETVVVREVLVPAEAPAPEPFAPNTAQQQTLGIT 102

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E LT I+ G ++ EIA  L +S NTV  + A    K     R+ A+       ++
Sbjct: 103 ARELETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELGLL 161


>gi|213963027|ref|ZP_03391286.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
 gi|213954368|gb|EEB65691.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena
           Capno]
          Length = 235

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E LT  S+G +S EIA  L IS  TVN +  +I  K   ++   AI  A + 
Sbjct: 173 FTLTPREKEILTLASQGFSSKEIAEKLFISTYTVNRHRQNIREKFNAESLIEAIDIARKK 232

Query: 244 NIV 246
            ++
Sbjct: 233 GVL 235


>gi|116624170|ref|YP_826326.1| two component LuxR family transcriptional regulator [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227332|gb|ABJ86041.1| two component transcriptional regulator, LuxR family [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 213

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 24/232 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +  +   R   V       + LA+ +  +          ++ E +     + +    F  
Sbjct: 1   MTDQAPIRILLVDDHSLFRESLAQALSSEEAFKVA-HCASIREAL-----MELVHQPFDL 54

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  + S+     +        +           L    + +  E         N   
Sbjct: 55  VLLDHDLGSERASQFLPAARQLGYE--------GRVLVVTAWVSDTEARRLMRQGVNGIF 106

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                ++ +   +  +      I       +  +A       ++    +        R+ 
Sbjct: 107 LKQGPLSELSGAIRSVAGGETWID----RSLTAIAEDPCATPQAAVPVFN------ERQR 156

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + L ++ EG ++ EIA  L IS + V   + S+ +KT  +TR   +  AV  
Sbjct: 157 KVLRFVLEGLSNKEIAWRLQISESYVKAILQSLFQKTGVRTRGQLVRVAVEQ 208


>gi|15597176|ref|NP_250670.1| response regulator EraR [Pseudomonas aeruginosa PAO1]
 gi|9947980|gb|AAG05368.1|AE004624_7 response regulator EraR [Pseudomonas aeruginosa PAO1]
          Length = 225

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      V+ ++     +D  +      +L R +           L +   LF  +   L
Sbjct: 35  GEEALQAVQREIPSLVIVDLGLPGISGLELTRRLRQR--------LPQLRVLFFSLHDEL 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y +       +   +  +      + +     +              
Sbjct: 87  ALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLA--------CQSWE 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E    ++ G    E+A  LG+S  TV+N+++ + +K    T++  
Sbjct: 139 EQGGAALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAEL 198

Query: 237 IAYAVRNNIV 246
           +  A+ + ++
Sbjct: 199 VHRAIDSGVL 208


>gi|119714209|ref|YP_919351.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119526118|gb|ABL79488.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 205

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 22/224 (9%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V   P   D L   +     +          E +       +     +   +D  
Sbjct: 1   MRVLVVEDHPIFRDGLLAALASAEDLQVVAAAGTAVEAM-----AALDAADPELALVDLA 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D++R                   L   +     + +         Y       
Sbjct: 56  LPDGAGIDVIREATARG----------VRVLVLTMSTEPTQLVHAIRAGARGYVVKGAGK 105

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             I   +  +     +   +          +        D        LT RE + L  +
Sbjct: 106 RDIVAAIEAVAAGDAVFGAEVANLALAAVTH-------QDARTAAFPTLTQREHDVLELL 158

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + G  +  IA  L +S  TV N+++SI+ K   +TR  A   A 
Sbjct: 159 ALGLPNAGIATRLFLSEKTVRNHVSSILAKLGVETRHEAAEMAR 202


>gi|254240419|ref|ZP_04933741.1| hypothetical protein PA2G_01067 [Pseudomonas aeruginosa 2192]
 gi|8671336|emb|CAB95008.1| response regulator [Pseudomonas aeruginosa]
 gi|126193797|gb|EAZ57860.1| hypothetical protein PA2G_01067 [Pseudomonas aeruginosa 2192]
          Length = 225

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      V+ ++     +D  +      +L R +           L +   LF  +   L
Sbjct: 35  GEEALQAVQREIPSLVIVDLGLPGISGLELTRRLRQR--------LPQLRVLFFSLHDEL 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y +       +   +  +      + +     +              
Sbjct: 87  ALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLA--------CQSWE 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E    ++ G    E+A  LG+S  TV+N+++ + +K    T++  
Sbjct: 139 EQGGAALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAEL 198

Query: 237 IAYAVRNNIV 246
           +  A+ + ++
Sbjct: 199 VHRAIDSGVL 208


>gi|332716106|ref|YP_004443572.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062791|gb|ADY66481.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 256

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ-----------ANMF 173
            + +    L   +      + LL   G       L ++   +              AN  
Sbjct: 116 RIIDGVLPLNLRLDVFMAAVDLLMKGGEHFPAALLGKLTPYSQAVNGKSVQSNAVIANRA 175

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
            +  V   +   LT REV+ L  + +G  +  IA  L +S NTV  ++ +I +K   + R
Sbjct: 176 DALAVSKSEMAALTTREVQILDLLCKGTQNKIIADRLHLSENTVKVHVRNIYKKMNVRNR 235

Query: 234 SGAIAY 239
           + A + 
Sbjct: 236 TEAASR 241


>gi|297528715|ref|YP_003669990.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297251967|gb|ADI25413.1| two component transcriptional regulator, LuxR family [Geobacillus
           sp. C56-T3]
          Length = 223

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 14/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H+    D           +             G     ++    +    LD  +      
Sbjct: 3   HILVVDDHRLVGEGTKNMLESEQDFQVELVTSGTEAEQMMEQRTYDVFLLDWRMPDMSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +   + +    ++        P  +   E+          + S T    ++   +
Sbjct: 63  ELSKRILEKQPNAK--IVIYTGYDIVPFLNYFIES------GITGFVSKTASSEQLVTAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   +I    L ++ L         K+      +   L   E   L  ++ G ++ 
Sbjct: 115 RCALRDEAVIPVHVLRQLRLF------EVKARMEEEVEHITLDMFEQNILIEVANGLSNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA    +S+ ++   ++ I  K    +R  A+  A +  ++
Sbjct: 169 EIARKRCMSQRSLERQLSRIFSKLRVSSRIEAVEKAKQLGLI 210


>gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
 gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099]
          Length = 206

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 24/215 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV--RCMAL 92
           R++  +        +  + E  G   F L+      +Q LD  V   +   ++  +   +
Sbjct: 2   RIVVAERNPFVISALREMLECDG--RFDLLGSVQSGKQFLDLAVKGGFDVAIIGWKLADM 59

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
              D    V  R  ++   VF    +              YC    D A I   ++ +  
Sbjct: 60  DGADVLAEVQSRKLDVRITVFSNDHDIGILKQCVRLGAQGYCFQFDDPAIIFDTILAVAH 119

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               I    + ++                +     +LT RE E L  +S+G T+ +IA  
Sbjct: 120 GRICIPYIDINKV----------------NDTPLAQLTVRERELLAVLSDGWTNLQIATR 163

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIA-YAVRN 243
            GIS NTV  ++ ++  K   + R+ A+A YA   
Sbjct: 164 TGISENTVKYHLKNLYDKLDVRNRAMAVALYARER 198


>gi|317405275|gb|EFV85604.1| two component transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 212

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 21/224 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V         LAR++  D  V            +       +R + F    LD  +   
Sbjct: 7   IVDDHLIIRRGLARILQEDPRVGLVREAADAPAAL-----RALRQEPFDAMVLDVALGER 61

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D+++ +           L        P        +       + Y +   D   + 
Sbjct: 62  DGLDVLKTVRADH-----PALGVVMLSVYP---ESQFAVRALRAGAHAYLNKGCDPDELL 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L+        +       +              D        L+ RE + L  ++ GK
Sbjct: 114 AALVNAAAGRMYVTPAVAELLA--------HTVRQDSTRPPHELLSNREFQVLQLLAAGK 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +   I   L +S NT++ Y A +  K   +T    + YA  +++
Sbjct: 166 SVSAIGEQLALSVNTISTYRARVFEKLGVRTLVELVDYARAHHL 209


>gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family
           [Acidobacterium sp. MP5ACTX9]
          Length = 190

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 19/182 (10%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                ++  +D +V+      +               ++    +    F           
Sbjct: 28  ALKAAEQTGVDVLVTDIEMPGMTGLEVAGALKVSRPGVKA---IILTTFARPGYLRRALD 84

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y       + +   +  +    R++      E                    +  
Sbjct: 85  AGASGYLLKDRPASELADAVRRVHRGLRVVDPALATE----------------AWSAEAD 128

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L    EG++S EIA  L +S  TV NY++  + K     R  A   A    
Sbjct: 129 PLTDRERQILQRAGEGRSSGEIAGELRLSEGTVRNYLSEAISKLGAANRVDAARIARAKG 188

Query: 245 IV 246
            +
Sbjct: 189 WL 190


>gi|300774649|ref|ZP_07084512.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506464|gb|EFK37599.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 214

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 76/241 (31%), Gaps = 28/241 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + I +  +    +  + ++ T +     ++       +   +   +E          
Sbjct: 1   MKTIPIAIVDDHTLISKALENMITENTQYRVIMNHPNGEEFIAGVERASE---------- 50

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              L     +D  +      +           ++Y  ++    +   +       I    
Sbjct: 51  ---LPAVVLMDVNMPYKNGIE-----TTEWLTEHYPDIK---VIALTMDDDERILIKMLK 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       + +   +  +F KG             +A     +      +     
Sbjct: 100 AGAKGYLLKDMQPSILFQAIETVFEKGSFYTD-------FVAQKLLKVKTEEAKNASLLS 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL  RE E + W     T  EIA  + +S  T++ Y  S+  K   K R+G + +A++++
Sbjct: 153 ELRDREKEFIKWACSELTYKEIADKMCLSPKTIDGYRDSVFVKLDIKNRAGLVLFALKHD 212

Query: 245 I 245
           +
Sbjct: 213 L 213


>gi|256376957|ref|YP_003100617.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255921260|gb|ACU36771.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 492

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 81/242 (33%), Gaps = 17/242 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALT--EYVGASHFLLVRWDLFQEQKL 74
             R+S       RS+     +     +    ++      E VG +   LV+      ++ 
Sbjct: 235 ALRSSRYDDRQARSEATGLAMGALLDLRAEEQVRRGLSGEPVGEAFAALVKDLEPVVRRA 294

Query: 75  DSIVS-------SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--TLPENITPPAG 125
              +         D P +L    A    +     L R       V         +     
Sbjct: 295 GVRLEVDEPGDGGDVPLELAGLAAAVSTEVVLLALDRDAVTSLRVGWQVGEELVLRVRDN 354

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-KDF 184
             + +     D A +R     + P G  I  +    +G  A     + ++        DF
Sbjct: 355 ATSGF-----DPAGVRALATRIAPVGGTISVEVDHRLGATATLVLPLRRALAAPEEVPDF 409

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L+ ++ G  + EIA  + +S  T+  ++  I  K    TR  A A AV   
Sbjct: 410 GLSARELDVLSRVARGLRNREIAREIQLSPATIKFHLVRIFEKLGVGTRGEAAAVAVEFG 469

Query: 245 IV 246
           +V
Sbjct: 470 LV 471


>gi|170745177|ref|YP_001766634.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658778|gb|ACB27832.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 219

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 64/225 (28%), Gaps = 22/225 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V   P   +   R+I     ++ T    +         +   +        LD  +   
Sbjct: 7   LVDDHPVVREGYRRLIERQPGLAVTAEAASAA-----EAYRQYKAHGPDLVILDLSLPGP 61

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +R +       +    +                    A     Y S       + 
Sbjct: 62  SGIEAIRHIRQ-----WDKTARILVFSMRT---GAVVARQAFAAGACGYVSKASPPRELL 113

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R +  D    I                       L+ REVE L+  + G 
Sbjct: 114 AAVAAVLRGERAMSADIARAIAQDDVAGGRAAVDA---------LSPREVEILSLTAAGM 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+  +A  L +S  TV+N ++ I  K   +T +  +  A+   +V
Sbjct: 165 TAQAVAEALCVSLKTVHNNLSGIRAKLGARTDAHLVWIALGAGLV 209


>gi|221134627|ref|ZP_03560930.1| two component LuxR family transcriptional regulator [Glaciecola sp.
           HTCC2999]
          Length = 212

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 26/219 (11%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            H   R  L A ++P    +          + +  +   + +        LD  +     
Sbjct: 9   DHPLFREALQAALLPFFNDMEIIE-----ADSLHNTISAIKKHPDIDVILLDLTMPG--- 60

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT---PPAGMDNRYCSLTFDVARI 140
                            VL +   +   V        +           +   ++   ++
Sbjct: 61  --------ADHFYGLTAVLDKCANIPVVVITATDNEESVNIAMHLGAKGFIPKSYTSRKM 112

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +M +   G  I    +          ++             ELT +++  +  + +G
Sbjct: 113 AHAIMNVLNGGTFIPDRYI-------DAISSTHPEMLTAIELVKELTPKQLLVIKCLKQG 165

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           K + EIA  L ++  T+  +I++I +K    +R+  +  
Sbjct: 166 KKNKEIAGELCVTEATIKAHISAIFKKLNVTSRTQIVLL 204


>gi|254461366|ref|ZP_05074782.1| DNA-binding response regulator, LuxR family [Rhodobacterales
           bacterium HTCC2083]
 gi|255262610|ref|ZP_05341952.1| DNA-binding response regulator, LuxR family [Thalassiobium sp.
           R2A62]
 gi|206677955|gb|EDZ42442.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae
           bacterium HTCC2083]
 gi|255104945|gb|EET47619.1| DNA-binding response regulator, LuxR family [Thalassiobium sp.
           R2A62]
          Length = 216

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 40/233 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + + L   +    S +S +  R    + +        +   +  +   +G    +    
Sbjct: 10  PITVALADSNMLVLSAMSEIFDRDPRFSLVATASTAEDFLGTVMRVPVQIG---IIDWNL 66

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                QKL  ++        +     +  D                           +  
Sbjct: 67  PALGGQKLIEVMRDQPSAPRILVYGNNAGD---------------------MPRQALSAG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +      V  +      +     +     + E+                      +L
Sbjct: 106 AAGFTPRNGPVEGLLDTCAAVAAGQMVFPFLDVRELQ----------------SDPIHQL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE   L  +S G ++ ++A    IS NTV  +++++  K +  +R+ A+A+
Sbjct: 150 TKREKALLEALSRGLSNRQLAAEFEISANTVKFHLSNLYEKLSVTSRTQAVAF 202


>gi|254410427|ref|ZP_05024206.1| transcriptional regulator, LuxR family protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182633|gb|EDX77618.1| transcriptional regulator, LuxR family protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 244

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 64/227 (28%), Gaps = 20/227 (8%)

Query: 32  LLARMIPLDCTVSWT-MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
               +             M  L E+  A ++ L   +       +  +      +     
Sbjct: 14  FFQAIADARDEQELRLQIMDELGEHFQAQYWGLCLLNE-DSHAAEVQMQGGADTEGFVAD 72

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT------------PPAGMDNRYCSLTFDVA 138
                 K   VL+   E   P    L  +                   ++          
Sbjct: 73  YNKLARKVDPVLRYVIEHHAPAHEQLVFSPEVWKQSELYQNCYARYDHEHVMMGPIVSGG 132

Query: 139 RIRIGLMLLFPKGRIILR-DRLWEIGLLAAYQANMFKSYDVHWGKD-----FELTGREVE 192
           R+  G+               L ++  L  + ++   +      K        LT RE E
Sbjct: 133 RLMGGVYFARASDAPAFDYKDLADLTGLCLHLSSRLATLRSQAKKSQSLVANRLTPRERE 192

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
               +++G T+ EI   L I++N+V   +  + RK     R+  +A 
Sbjct: 193 IADLVAKGLTNAEIGAELWITQNSVKQALKRMFRKLNVSARAELVAR 239


>gi|182436743|ref|YP_001824462.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465259|dbj|BAG19779.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 234

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 64/223 (28%), Gaps = 23/223 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + IVL  +     + +  + T  D    +   +        +  L              D
Sbjct: 14  MRIVLADDSVLIRAGIREILTSHDH-DVIRECEDADELVAVVDELVR----------SGD 62

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGM 126
                  D  +      D +R             VL     +  P    L         +
Sbjct: 63  APDMVITDVRMPPKNTDDGLRAAIDLRSRHRDLPVLVLSAYVTGPYVRELLSGPGADGAV 122

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                     VA     +  +   G +I  + +                 D   G    L
Sbjct: 123 GYLLKEKVGRVADFLRAVETVSAGGVVIDPEVVRHAT-----------RADSPQGPLARL 171

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
           T RE E L  ++EG+++ EIA  L +S   V+ ++A++  K  
Sbjct: 172 TAREREVLAHMAEGRSNAEIATELFLSGAAVSKHVANVFVKLG 214


>gi|167032651|ref|YP_001667882.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|166859139|gb|ABY97546.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 205

 Score = 89.2 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 56/190 (29%), Gaps = 19/190 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++R        LD  +      +++                    L        
Sbjct: 35  GVDAMQMIRESNPDLVILDISIPKLDGLEVLSRFQSMALP--------LKVLVLTAQSPA 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D++ +   +  +           +    ++      +F+  
Sbjct: 87  LFAVRCMHSGAAGYVCKQEDLSELLSAIKAVLAGYNYFPSQAIKHNQVIDTDL-QLFRQV 145

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +           RE+  L   ++G+++ EIA  + +S  TV+ Y   +M K    T    
Sbjct: 146 N----------DRELMVLQLFAQGRSNKEIAKGMFLSSKTVSTYKKRLMHKLQVNTLVDL 195

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 196 IEMAKRNALV 205


>gi|294010480|ref|YP_003543940.1| response regulator UhpA [Sphingobium japonicum UT26S]
 gi|292673810|dbj|BAI95328.1| response regulator UhpA [Sphingobium japonicum UT26S]
          Length = 207

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 58/220 (26%), Gaps = 32/220 (14%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR---------WDLFQEQKLDSIVSSDWPFD 85
            +  +D   S         +  G                         LD  +      +
Sbjct: 6   VIHLVDDEESIRKAASFALKTAGYDVVTYASGVEFLKEAKSAAVGCVILDVRMPEMDGLE 65

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   MA    +           +       +   +    G    +    F+ A +   + 
Sbjct: 66  VQAAMAARGVNM--------PVIVLTGHGDVSVAVQAMKGGAVDFLEKPFEKAALLGAVS 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             F +   +    L                      +   LT RE E L  ++ G  +  
Sbjct: 118 RAFARLDDVDLRTL---------------ETSEAGVRVAALTPREREVLERLANGLPNKT 162

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  LG S  TV  + AS+M K   +  S A+  A    +
Sbjct: 163 IAYDLGCSSRTVEVHRASLMAKLEVRNLSEALRIAFAAGM 202


>gi|217976673|ref|YP_002360820.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217502049|gb|ACK49458.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 208

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 15/183 (8%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
           + L          +D ++ S+     +  +           +   +    PV        
Sbjct: 39  YRLFHRAKPDVVIVDLVIKSN-GLAGLDLIRRMRLRDQKARILVFSMHADPVIIGR---- 93

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y                +      +      E+ L+  + ++         
Sbjct: 94  -ALEAGAMGYVVKDAGPDEFIEAFKRVDSGKPYLSNAIATEVALVNVHASS--------- 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE++ L  ++EGK+   IA  L +S  TV N  + + RK    + +  IA A
Sbjct: 144 NPLANLSRREIQTLALLAEGKSYRAIADELRVSYKTVVNVCSLLRRKLGAGSLAELIALA 203

Query: 241 VRN 243
           VR+
Sbjct: 204 VRH 206


>gi|254976785|ref|ZP_05273257.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-66c26]
 gi|255094171|ref|ZP_05323649.1| salavaricin two-component response regulator [Clostridium difficile
           CIP 107932]
 gi|255315923|ref|ZP_05357506.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-76w55]
 gi|255518582|ref|ZP_05386258.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-97b34]
 gi|255651702|ref|ZP_05398604.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-37x79]
 gi|306521501|ref|ZP_07407848.1| salavaricin two-component response regulator [Clostridium difficile
           QCD-32g58]
          Length = 200

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 20/139 (14%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    +                + +       +   L+ ++        +    I     
Sbjct: 78  IILTGYDLPVYKHEAKKIGIYGFLNKNISPDSLIDSLLKVYQGVTCFPSENTEVII---- 133

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                            +LT  E   L  I  GK    IA  L IS  T++N++  I  K
Sbjct: 134 ----------------EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDK 177

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +   AI  A++   +
Sbjct: 178 LDVSSSVEAITKAIKMGYI 196


>gi|260684735|ref|YP_003216020.1| salavaricin two-component response regulator [Clostridium difficile
           CD196]
 gi|260688393|ref|YP_003219527.1| salavaricin two-component response regulator [Clostridium difficile
           R20291]
 gi|260210898|emb|CBA66091.1| salavaricin two-component response regulator [Clostridium difficile
           CD196]
 gi|260214410|emb|CBE06831.1| salavaricin two-component response regulator [Clostridium difficile
           R20291]
          Length = 206

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 20/139 (14%)

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           +    +                + +       +   L+ ++        +    I     
Sbjct: 84  IILTGYDLPVYKHEAKKIGIYGFLNKNISPDSLIDSLLKVYQGVTCFPSENTEVII---- 139

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                            +LT  E   L  I  GK    IA  L IS  T++N++  I  K
Sbjct: 140 ----------------EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDK 183

Query: 228 TATKTRSGAIAYAVRNNIV 246
               +   AI  A++   +
Sbjct: 184 LDVSSSVEAITKAIKMGYI 202


>gi|330998013|ref|ZP_08321844.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569314|gb|EGG51094.1| hemerythrin HHE cation binding domain protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 326

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D     +  L+ RE E +  + +G ++ EIA  L IS NTV  +  +I RK    + +
Sbjct: 248 EQDGEDSANDALSDREKEVIVCVVKGMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPA 307

Query: 235 GAIAYAVRNNIV 246
           G   YA+ N ++
Sbjct: 308 GLTIYAIVNGLI 319


>gi|256420108|ref|YP_003120761.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256035016|gb|ACU58560.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 234

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE + L    +G  + EIA  L +SR T+  +  +I  K   +  +  IA A +   
Sbjct: 174 LTPREKDILKLTVKGLNNKEIAAELNLSRYTIETHRKNIRIKLKVRNTTELIALARKVGY 233


>gi|167914159|ref|ZP_02501250.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 112]
          Length = 306

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 60  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFMRDDAECLYLHEAFT 119

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 120 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDD 178

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 179 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASA 238

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 239 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 298

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 299 FASARGLI 306


>gi|146339448|ref|YP_001204496.1| response regulator FixJ [Bradyrhizobium sp. ORS278]
 gi|146192254|emb|CAL76259.1| two component transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 205

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 32/219 (14%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL---------DSIVSSDWPFD 85
           R+  +D   +    +  L +  G    L      F ++           D  +      +
Sbjct: 6   RVYVIDDDEAMRDSLNFLLDSSGFDVTLFENAQSFLDRLPTLGFGCVVSDVRMPGIDGIE 65

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L++ M  +       +L             +P  +         +    F+  R+   + 
Sbjct: 66  LLKRMKTTGSGF--PIL------VMTGHGDVPLAVEAMKLGAVDFLEKPFEDERLVAMIE 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +     ++      +LA               +   L+ RE + +  +  G ++  
Sbjct: 118 TAIKQAEPAAKNESVTQDILA---------------RVASLSPRERQVMDGLMAGLSNKL 162

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           IA    IS  T+  Y A++M K    + S  +  A+R  
Sbjct: 163 IAREYDISPRTIEVYRANVMTKMGANSLSELVRLAMRAG 201


>gi|284046201|ref|YP_003396541.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950422|gb|ADB53166.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 201

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 59/229 (25%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             +A ++ L+  +     +    E VGA               LD  
Sbjct: 2   IRVLLAEDQAMVRGAIASLLGLEHDIVVVAEVGRGDEVVGA-----AATSRPDVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +           L     +    F          A     +       
Sbjct: 57  MPGMTGLDAAAALHS--------ALPDCKVVILTTFGRPGYLRRAMADGAAGFMLKDAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           + +   +       RI+                            D  LT RE E L   
Sbjct: 109 SELAAAIRRAVAGERIVDPGLAAA----------------ALSTGDSPLTPREREVLAAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
               T  E+A  L +S  T  N++++IMRK    +R  AI  A     +
Sbjct: 153 RTEGTVAELASALHLSHGTARNHLSAIMRKLGANSRIEAIRIAEERGWL 201


>gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus
           hydrothermalis DSM 14884]
          Length = 217

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 14/219 (6%)

Query: 33  LARMIPLDCTVSWTMRMYALTE------YVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++  D        +  L E        GA            E + D  +      D+
Sbjct: 1   MTRIVVADSCTLLCQGLSRLLETEADLRVTGAYTRGREALRAVLETRPDVFLVDTRLEDV 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              + + E  +    ++       P      E           +     D+  +   +  
Sbjct: 61  DAFVVVGEVRRARPEVRVVVFSAQP---EAREVRQAYEAGAAAFVEKRADLGALLQVIRR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +    R++   R   I            +         EL     E L  +++G ++ EI
Sbjct: 118 VRRGERLLDAARAAAIVQELEAGQRAVWARRAARLAAREL-----EILQLLAQGCSNQEI 172

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  LG+S  TV N ++ +  K   + R+ A  +AVR  I
Sbjct: 173 ADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAGI 211


>gi|326776946|ref|ZP_08236211.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|326657279|gb|EGE42125.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 344

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 64/280 (22%), Gaps = 73/280 (26%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            ++ +V+  ++    + +  L +    +  +                    G   +    
Sbjct: 77  DRLRVVVADDNPVVRAGLGVLLSGRADIQVVAEAAD---------------GREAYERTL 121

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +        +  +           +     L                 
Sbjct: 122 QHRPDVVLLDVRMPGVDGISALPHL-----------VGLAPVLMLTYSRESEIVHEALRL 170

Query: 126 MDNRYCSL-TFDVARIRIGLMLLFPKGR-------------------------------- 152
               Y     F   ++   +                                        
Sbjct: 171 GAGGYLVHGEFTADQLVRAVRDTKDGRANFTATAADALLAHMRLGPATPRGPLPEGLGSA 230

Query: 153 ----------IILRDRLWE-IGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWIS 198
                             E +  L         S       +   + L+ REVE +  I+
Sbjct: 231 LTTAPLPTHPAPHPRETSESLSQLQPSVGQSSLSGGSTPAPNRQQYRLSSREVEVMDLIA 290

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            G ++ +IA    IS  TV N+I  I  K  + +RS AIA
Sbjct: 291 SGMSNQQIAATCFISEKTVKNHINRIFTKLHSTSRSEAIA 330


>gi|218233335|ref|YP_002369918.1| competence protein A [Bacillus cereus B4264]
 gi|228961368|ref|ZP_04122983.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229153297|ref|ZP_04281475.1| Two-component response regulator ComA [Bacillus cereus m1550]
 gi|218161292|gb|ACK61284.1| competence protein A [Bacillus cereus B4264]
 gi|228629901|gb|EEK86552.1| Two-component response regulator ComA [Bacillus cereus m1550]
 gi|228798326|gb|EEM45324.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 213

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     M A          +      F    LD  + +    
Sbjct: 3   RVLIVDDHQIVGEGTKSMIELEEDMQAEYILNEQEALIKSDATPFDVYLLDMNMPNCSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +          ++      +   F+ L  +        +   S +     + + +
Sbjct: 63  ELAQKI--LHIQTDAKIILYTGFEYVSQFNLLINS------GISGIISKSASQQELLMAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++    L ++            +      K   LT +E+E L  +S+G ++ 
Sbjct: 115 RAAVNGYTLLPISLLRQLRT-------DDITTQQLENKTALLTQKELEILESVSKGSSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S   V   +  I +K    +RS A+  A+R  I+
Sbjct: 168 QIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGIL 209


>gi|146338977|ref|YP_001204025.1| two-component LuxR family response regulator [Bradyrhizobium sp.
           ORS278]
 gi|146191783|emb|CAL75788.1| putative two-component response regulator, lux-R family
           [Bradyrhizobium sp. ORS278]
          Length = 211

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 60/220 (27%), Gaps = 17/220 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +      ++    +  LTE   A   +     +      +D  +     
Sbjct: 3   RVLLVDDHPVVITACRWLLN-EAGIGTLTEAHDAESAYAAYVREQPDAAIVDLRLRG--- 58

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL     +     +    +                 +      + Y         +   
Sbjct: 59  EDLGGIGLIERMRSHDPQARILVFSMLG---DPRIVRSAIDAGASGYLLKDAPPQELPKA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   G  +       I +L           D        LT RE + L  +++ K+ 
Sbjct: 116 LEQVRTGGTYLDPQLAMRIAML---------RQDADGAAQTSLTPRERQALALLAQAKSY 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             IA  LGIS  TV N    + +K   ++    +  AV  
Sbjct: 167 QAIADQLGISYKTVINLTYRLRQKLGARSLPDLVRLAVEM 206


>gi|293414338|ref|ZP_06656987.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
 gi|291434396|gb|EFF07369.1| DNA-binding transcriptional regulator CsgD [Escherichia coli B185]
          Length = 216

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|110632702|ref|YP_672910.1| two component LuxR family transcriptional regulator [Mesorhizobium
           sp. BNC1]
 gi|110283686|gb|ABG61745.1| two component transcriptional regulator, LuxR family [Chelativorans
           sp. BNC1]
          Length = 216

 Score = 88.8 bits (219), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 66/237 (27%), Gaps = 26/237 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +         H+  R  L + +  +    +      A       +   +    
Sbjct: 1   MKVLLVDD---------HVLIRDALRSVLREVWDRAAIIEAADA-----RQAMHSIEANP 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     FD +  +                 +                   
Sbjct: 47  DLDLVLLDLTLPDGNGFDTLSRIRERH--------PAMAVVILSASDDRDAITRAFELGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   +     +   L L+F  G  +  + L              +           LT
Sbjct: 99  VGFIPKSAQREVMLSALKLVFSGGIYVPPEVLGRPQP----PPATARPELSPSLSKLGLT 154

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R++E L  + +GK++  I   L I+  TV N++  I++      R+ A+  A    
Sbjct: 155 ERQLEVLALMMQGKSNKAICRELDIAEPTVKNHVTCILKALKVSNRTEAVIAASALG 211


>gi|312130436|ref|YP_003997776.1| two component transcriptional regulator, luxr family
           [Leadbetterella byssophila DSM 17132]
 gi|311906982|gb|ADQ17423.1| two component transcriptional regulator, LuxR family
           [Leadbetterella byssophila DSM 17132]
          Length = 218

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 25/181 (13%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA---- 124
                LD  +     F+  + +  +  D               +  ++ ++         
Sbjct: 51  PDIVLLDISMPVMDGFETAKWITKNHPDI------------LVMALSMQDDEQSLFKMIN 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +         + I L  L  +          ++              +      +
Sbjct: 99  NGAKGFMHKNIHPQELEIALKTLLREKIYFPGWATQKL---------YSSINNPAPSPTY 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E+T RE E L ++ +  T  EI   +  S  T++ Y  S+  K    +R G   +AV++ 
Sbjct: 150 EITPREEEFLKYVCQDLTYKEIGEKMNCSHRTIDGYRDSLFTKLGINSRVGLALFAVKHK 209

Query: 245 I 245
            
Sbjct: 210 Y 210


>gi|289168290|ref|YP_003446559.1| response regulator [Streptococcus mitis B6]
 gi|288907857|emb|CBJ22697.1| response regulator [Streptococcus mitis B6]
          Length = 198

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 23/120 (19%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   + D   +   L  ++  G++   + + E+                       
Sbjct: 98  GVYGFLDKSMDPDELVKKLEKIYLGGKVFSDEVMVEM----------------------- 134

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE+E L  +  G T D++   + +S+ TV+N++A+I  K     R  AI  A +   
Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQLGY 194


>gi|226314788|ref|YP_002774684.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226097738|dbj|BAH46180.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 856

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 3/133 (2%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                 +         Y     D       ++    K + + +  +  + +L       F
Sbjct: 720 AMECMRMAVTLAAPEGYVRTFLDEGSGVAKMLYSLYKSKNVSKQEMAYLSMLLKSVEKEF 779

Query: 174 KSYD---VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            + D          +LT RE E L  I EG ++ +IA  L ++  TV  ++  I  K   
Sbjct: 780 PTLDIQIRVSPALEKLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQV 839

Query: 231 KTRSGAIAYAVRN 243
           K R+ AI     +
Sbjct: 840 KNRAQAIVRLRES 852


>gi|71279165|ref|YP_267686.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71144905|gb|AAZ25378.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 223

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 29/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q  +++  +     + +          A  +  D                      + 
Sbjct: 1   MSQAKVIIADDHPLFRTALKQAIIECIDDAGTLEADNFSELL--------------IAIE 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +  +  F  +     ++   +Y  L                      
Sbjct: 47  ATPSLEIVFLDLHMPGNDGFTGL-----TQLQNHYPDLVVIMVSSD---DNDETMQKAIN 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   + D+  I   +  +      +        G   A              +  
Sbjct: 99  FGAAAFIPKSADLTTIASAIDTVLMGDIWLPELIEKNAGQQTALAHQKLAK------QLG 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +LT ++   LT I++G+ + +IA  L I   TV  ++++I+ K     R+     A + 
Sbjct: 153 QLTPQQYVVLTQIADGQLNKQIAYYLNIKETTVKKHVSAILEKLEVNNRT-LAGLAYQQ 210


>gi|319779529|ref|YP_004130442.1| two-component response regulator [Taylorella equigenitalis MCE9]
 gi|317109553|gb|ADU92299.1| two-component response regulator [Taylorella equigenitalis MCE9]
          Length = 206

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 28/212 (13%)

Query: 39  LDCTVSWTMRMYALTEYVGA--SHF----LLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
           +D   +    +  L E  G     F    L +         +            ++    
Sbjct: 11  VDDDNAVRDSLRFLLETNGYIVETFPSGELFLDSYKPDSVSILITDVRMPGMSGLQLQEE 70

Query: 93  SEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
               K    ++        P        ++        +    F++  I           
Sbjct: 71  MNNRKIDIPIVFITGHGTVP------MAVSTMQRGAVDFIEKPFNLTHI----------- 113

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
               ++ +  +  +A  +A   KS   +     +LT RE + L  I  G+ + +IA  L 
Sbjct: 114 ----QEVISRLINVAQDRAEKTKSQKANDALLGKLTSREQQVLERIVAGRLNKQIADDLS 169

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IS  TV  + A+IM K      +  I  A+++
Sbjct: 170 ISIKTVEAHRANIMEKLEVSNVADLIKVALKS 201


>gi|118589374|ref|ZP_01546780.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
 gi|118438074|gb|EAV44709.1| two component transcriptional regulator, LuxR family protein
           [Stappia aggregata IAM 12614]
          Length = 205

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 64/239 (26%), Gaps = 42/239 (17%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+ +     I +  +D      +S L      +                   T   G + 
Sbjct: 1   MDMKADAEAIYIVDDDPAVRDALSVLFNMEGYVVE-----------------TFSDGDTF 43

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                  +     LD  +      ++++ +          +     +   P        +
Sbjct: 44  IQSASKAVPACVMLDVHMPGRSGIEILKALNAENYP--APIFIISGQGDIP------MAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F    +   +                    +A  +    K     +
Sbjct: 96  EAIRNGAFDFVEKPFSAETVLERVKES-----------------IAITRQRQDKVVPASF 138

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT RE+E L  I++G ++ E    LGIS  TV  + A IM K   +  +  +  
Sbjct: 139 QGADLLTRRELEVLKEITDGASNKEAGRTLGISPRTVEVHRARIMEKLGARNAADLVRI 197


>gi|73542427|ref|YP_296947.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72119840|gb|AAZ62103.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 219

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 12/218 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSI 77
            ++    L    D    +     T   T  M        G++   L      Q  + D +
Sbjct: 1   MSNAAPTLLVVDDHPMALSG--TTAFLTEVMPDVAVHAAGSAREALTSL--QQGLRPDIV 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +   W  D            +  V+     +F     T        A     +     D 
Sbjct: 57  LLDIWLNDGTGF---DAMQTFKTVIPGARFIFMSAEATPEIVGRARALSACGFVGKHLDA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +         D      L    Q+            +  LT R+   L  +
Sbjct: 114 HAFTSAVRKVLAGDTSFPTDE----ALSGRAQSFGPAHGIPVTPAELGLTPRQGSVLALV 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            EG  +  IA  LG++ NTV  ++++I+++   +TR  
Sbjct: 170 LEGLPNKVIARRLGLTENTVKEHVSAILQRLGVRTRMQ 207


>gi|330505285|ref|YP_004382154.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
 gi|328919571|gb|AEB60402.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina NK-01]
          Length = 211

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 67/233 (28%), Gaps = 35/233 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    QQ  I++  +       +  +  R    A ++             A T       
Sbjct: 1   MPERSQQERIIVADDHPVFRDGLCRIAQRVFPQACILEAGDMEDVLRLAQAGT------- 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD +     P  +                 R + +   +        
Sbjct: 54  -------APSLFMLDLLFPGQSPQAISALRQA---------FARSSIVVVSMVDNRELID 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   + +         I   LM +     ++    L   G+ A  ++          
Sbjct: 98  EVMAAGADGFIGKATPPDEIAAALMAVRDGEFVLT---LGPAGVPAFAESRHLLE----- 149

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +LT R+ E L  +  G ++ EIA  L IS  TV  +++S++R     TR
Sbjct: 150 ----QLTPRQQEVLRLVVRGLSNKEIARELAISPFTVRIHVSSLLRTLDVSTR 198


>gi|325274520|ref|ZP_08140584.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51]
 gi|324100337|gb|EGB98119.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51]
          Length = 205

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 19/190 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++R        LD  +      +++                    L        
Sbjct: 35  GVDAMQMIRESHPDLVILDISIPKLDGLEVLARFQAMALPM--------KVLVLTAQAPA 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D+  +   +  +           +           +   + 
Sbjct: 87  LFAVRCMHSGAAGYVCKQEDLGELLSAIKAVLAGYNYFPSQAIK---------HDQVTTS 137

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D+   +      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K    T    
Sbjct: 138 DLQLFRQVN--DRELMVLQLFAQGRSNKEIAKGMFLSSKTVSTYKKRLMQKLQVSTLVDL 195

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 196 IEMAKRNALV 205


>gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CB0101]
          Length = 79

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +L+ RE+E +  +++G T+ EI   L IS+ TV+N+++++  KT  K R   + +A+ +
Sbjct: 1   MDLSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDH 60

Query: 244 N 244
            
Sbjct: 61  G 61


>gi|254292885|ref|YP_003058908.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041416|gb|ACT58211.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC
           49814]
          Length = 249

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 70/242 (28%), Gaps = 26/242 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV--SSDWPFDLVR 88
           D   R+         T  +    E  G   F     D     + D+ +   S    D   
Sbjct: 8   DGCDRLQSAKSQEEITKAIQGFVENKGFWSFNFGYLDTLNFSRADAPLKFISTMSDDWAE 67

Query: 89  CMALSEKDKYYNVLQRPTELFCP-------------VFHTLPENITPPAGMDN------- 128
                + ++    ++   +                 V  +  E     A   N       
Sbjct: 68  HYMNEKYEEVDFAVRELRKERPTPILVGYELQKKMQVLTSDEEKYLRDAAEANWQNGCVI 127

Query: 129 --RYCSLTFDVARIRIGLMLLFPKGRI-ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 +             L  K  + +      EI +   +   +            E
Sbjct: 128 PLGSLPMDNKPPAGIGVASELREKEFLKVWEAGASEILVFMNFMNQVLSQSIADLLYSIE 187

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE +CL +++ G   D I   L I+  TVN +I +   K    T + A+A A+R N
Sbjct: 188 PLTDRERDCLAFLARGLRPDRIGDELSIATVTVNMHIRNARYKLKATTNAHAVAKAIRLN 247

Query: 245 IV 246
            +
Sbjct: 248 FI 249


>gi|261339343|ref|ZP_05967201.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
 gi|288318141|gb|EFC57079.1| putative csgAB operon transcriptional regulatory protein
           [Enterobacter cancerogenus ATCC 35316]
          Length = 216

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T +  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEEEGRVVEGLQGILRGECYFSQK-------LASYLITHSGNYRYNSSESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 255

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 21/187 (11%)

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF--------HT---LPENITPP----AG 125
            W    +R             ++       P +               + I        G
Sbjct: 59  RWLDPDLRYWEDRGFALRAAFIRASRVCAEPFYFQGGRLRSWRTNPALDAIAAEGIETFG 118

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRI----ILRDRLWEIGLLAAYQANMFKSYDVHW- 180
           +     +  +        +    P   +    +   R  E+  LA      +        
Sbjct: 119 VGAAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELHALALRFVATYAEATGALV 178

Query: 181 -GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT RE++ L W + GKT  EI  I+ IS  TV  +I +  RK     R+ A+  
Sbjct: 179 GTSPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHR 238

Query: 240 AVRNNIV 246
           A     +
Sbjct: 239 AATLGYL 245


>gi|149911017|ref|ZP_01899646.1| regulatory protein CsgD [Moritella sp. PE36]
 gi|149805920|gb|EDM65906.1| regulatory protein CsgD [Moritella sp. PE36]
          Length = 230

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              +   ++  +  G+  +      + R  L  +  +         +  V   +  ELT 
Sbjct: 120 GVFNKRDELDVVCKGIQKITEGEFWMPRRTLSSLISI------YRSTKAVDLDRKPELTT 173

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE E L  +  G ++ EIA  L +S +T+ +++ ++ +K   K R  A+++A  +
Sbjct: 174 REQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVFKKIKVKNRLQAVSWAKES 228


>gi|331001406|ref|ZP_08325026.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
 gi|329568288|gb|EGG50099.1| transcriptional regulator, LuxR family [Parasutterella
           excrementihominis YIT 11859]
          Length = 220

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 19/123 (15%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
            +  +   +         + +   +  R+   +     +                    +
Sbjct: 81  AYADVGTAVMALREGAYDFLTKPINDERLLESVEAAVNED-----------------WQS 123

Query: 172 MFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                +V   ++    LTGRE++ +  I++G  + EIA  LGI+  TV  + +SI RK  
Sbjct: 124 RSTLKNVKKNRELLLTLTGRELDIVRLITKGLNNKEIAEELGIAEKTVKVHRSSIYRKLQ 183

Query: 230 TKT 232
            +T
Sbjct: 184 VRT 186


>gi|256831369|ref|YP_003160096.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
 gi|256684900|gb|ACV07793.1| two component transcriptional regulator, LuxR family [Jonesia
           denitrificans DSM 20603]
          Length = 205

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 55/223 (24%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E   GA    ++         +D  +     
Sbjct: 4   RVLIADDQALVRSGLAALLDLEPDIEVVAEVSTGAQAISVIPSTRPHVCLMDVQMPDLNG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  + +                 +    F          A     +       +++   
Sbjct: 64  IEATQSITCDH--------PGVAVIMVTTFGRTGYLKDALAAGARGFIVKDTPASQLAET 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R++  +                            LT RE + L     G T 
Sbjct: 116 IRAVHRGIRVVDPELAA----------------SSLAEGSNPLTDREQDALRCALTGDTV 159

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  L +S  +  N ++  ++KT    R  A   A     +
Sbjct: 160 AGIAARLHVSAGSARNLLSQGIQKTGAANRVQAARIASERGWI 202


>gi|194291367|ref|YP_002007274.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225271|emb|CAQ71213.1| Putative Transcriptional Regulator, LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 918

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 62/237 (26%), Gaps = 8/237 (3%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL--- 74
           +R                +        W  R    +         L R  L    +    
Sbjct: 682 ERARLALRQGNVHAAQEAIERAADPALWRTRPGVSSFASDVEDITLGRLRLDLYARPGTP 741

Query: 75  -DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
               +  +        +          + Q            +        G    +  +
Sbjct: 742 VREAIERELAAAAGNQLMRRALKLRILLAQAWQRTGDGAHALVVMGEALRFGAAEGFVRI 801

Query: 134 TFD-VARIRIGLMLLFPKGRIILRD-RLWEIGLLAAYQANMFKSYDVHWGKD--FELTGR 189
             D    +R  +     +    L    + ++       A                 LT +
Sbjct: 802 FADEGDDVRRLVADACARQAASLPAPYVEKLLQACGQAAAEPSGAGRPAPPALVEPLTPK 861

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E + L  ++EG ++  +A  L +S  TV  ++ +I  K     R+ A+A A +  ++
Sbjct: 862 EQKVLHLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGLL 918


>gi|58039805|ref|YP_191769.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58002219|gb|AAW61113.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 224

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 58/213 (27%), Gaps = 25/213 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    +   +  +     +  +     G     L+R         D  +     
Sbjct: 3   RLILAEDQTMLLDAFEALLQLEDDIKIVGRATDGREALDLIREHRPDVVLTDIEMPHVTG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L   +                 +    F                Y      + ++   
Sbjct: 63  IELAEKILQESLP--------SRVMIVTTFGRSGYLRRALQAGVRGYMLKDAPITQLAAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +   GR I  D       LA    +              L+ RE   L     G+T+
Sbjct: 115 IRKVAAGGRAIAPD-------LAEAVWDALPD---------PLSERERAMLRLAEAGRTN 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            EIA  L +S  TV NY + I++K   + R  A
Sbjct: 159 REIAEELSLSSGTVRNYFSEIVQKLDARNRIEA 191


>gi|17232904|ref|NP_489442.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134894|dbj|BAB77450.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 223

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 10/191 (5%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
            G   F L+         +D ++      +L R +          V+    E      ++
Sbjct: 35  CGKIGFQLIEQVNPDVVLVDLLLPDMSGLELTRSIKRK---TNSKVVIFTNETHSDFINS 91

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                       + Y   + DV  I + +   +    ++      ++ L + YQ      
Sbjct: 92  ------AFRHGADSYMLKSADVELIELAIKRAYFYECLLDPKLAKKL-LESLYQNRYIDP 144

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             V        T R+++ L  +++G    +IA  + +S +TV  Y + +  K   K R  
Sbjct: 145 TFVDKNLIDPPTERQIQVLRLLAQGLVFQDIAKEMFLSVSTVKQYASDLYSKWHVKNRYE 204

Query: 236 AIAYAVRNNIV 246
           AI        +
Sbjct: 205 AIKRGAMLGYI 215


>gi|282861577|ref|ZP_06270641.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282563393|gb|EFB68931.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 190

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 25/210 (11%)

Query: 38  PLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            L   +     +  + E   G     L R        LD  +      +    +      
Sbjct: 5   ALASLLELESDIEVVAETGNGDEVLPLARLHRPDVAVLDIDMPGIDGIEAAALLHSE--- 61

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                L                     A   + +     + AR+   +  +   GR++  
Sbjct: 62  -----LPECRTTILTTLGRPGNLRRALAAHASGFLLKDTEPARLAAAIREVVAGGRVVDP 116

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +                         +  L+ RE E L   + G+   EIA  L +S  T
Sbjct: 117 ELA----------------LSALQTGESPLSARETEVLRLAAAGEEVPEIARALFLSAGT 160

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V NY+ + + +   + R  A+  A     +
Sbjct: 161 VRNYLTAAVTRLDARNRMDAVRIARNAGWL 190


>gi|150376101|ref|YP_001312697.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150030648|gb|ABR62764.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 229

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 17/221 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P   D LA  +             +L+E +                 LD  +   
Sbjct: 18  VIDDHPLYCDALAATMESTFNTRRIRTATSLSEALQQLRLRF----SPDLIMLDLNLPDA 73

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +     D    V+          F +     +  A     +     D    +
Sbjct: 74  SGLSGFLKIKEKMPDI--PVI------VISAFTSHDVVQSVMAAGAAGFIPKDIDRHNFQ 125

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  ++     +          + A      +S +    K   L+ ++   L+ I EG 
Sbjct: 126 EAMQDIWNGKTYVPPGYA-----VQARATAADQSAETISRKIAHLSQQQTRILSLICEGM 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +  IA  + ++  TV  +I +++R+     R+ A      
Sbjct: 181 PNKLIAYEMQLAEATVKAHITALLRRLGVHNRTQAAMLVRE 221


>gi|296269694|ref|YP_003652326.1| LuxR family two component transcriptional regulator [Thermobispora
           bispora DSM 43833]
 gi|296092481|gb|ADG88433.1| two component transcriptional regulator, LuxR family [Thermobispora
           bispora DSM 43833]
          Length = 201

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 64/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L    + +  +  +           A                
Sbjct: 2   ITVLLAEDQGMMRGALALLLGMEEDIEVVAQVSSGDEVVPAALAA--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +           L     L    F              
Sbjct: 47  RPDVALLDIEMPGRSGLDVAAELRDR--------LPSCRVLILTTFGRPGYLRRAMEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +      V  +   +  +     ++  +                            LT
Sbjct: 99  RGFLVKDGPVEELAGAIRRVLRGELVVDPELAAA----------------ALSAGPNPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G T  +IA  L +S +TV NY++S + KT T+ R  A   A  N  +
Sbjct: 143 EREREVLAAAADGATVADIAARLHLSESTVRNYLSSSIGKTGTRNRIEAARVARHNGWL 201


>gi|310287322|ref|YP_003938580.1| Response regulator of two-component system, LuxR family
           [Bifidobacterium bifidum S17]
 gi|309251258|gb|ADO53006.1| Response regulator of two-component system, LuxR family
           [Bifidobacterium bifidum S17]
          Length = 230

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 26/226 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFL---------LVRWDLFQEQKLDSIVSSDWPFD 85
           R+  +D        +  +    G +  L         + R+    E   D ++       
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTADVLWSVNDGGAAIRRYFESPENHPDILLIDIQMPG 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +    A  E        +     F   F                Y     DVA I   L 
Sbjct: 62  MNGLDAAREILTKDPAARIL---FLTTFSDQAYIEQAMRLGTKGYLIK-QDVAAIAPALH 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQ-------ANMFKSYDVHWGKDFE------LTGREVE 192
            +     ++  D + ++    A         A+      +  G+         L  RE +
Sbjct: 118 AVMAGQVVLGADVIGKLTGPTAGAGCKGPDDASDTAGDGIPHGRRTSDGIDQLLNERERD 177

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               ++EG  + +IA  L +S  TV N I++++ K A   R+    
Sbjct: 178 IAALVAEGLDNRDIAAKLYLSEGTVRNRISAMLDKLALTNRTQLAI 223


>gi|325859996|ref|ZP_08173123.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|325482522|gb|EGC85528.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           CRIS 18C-A]
          Length = 336

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  +  L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 259 ITQSPDSNEVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAG 318

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 319 LTIYAIVNNLV 329


>gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2]
 gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2]
          Length = 75

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A+   +R 
Sbjct: 11  FLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRL 70

Query: 244 N 244
            
Sbjct: 71  G 71


>gi|302536520|ref|ZP_07288862.1| predicted protein [Streptomyces sp. C]
 gi|302445415|gb|EFL17231.1| predicted protein [Streptomyces sp. C]
          Length = 224

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQE 71
           +  D  R   V       + L  ++           +  + +    A+   L      + 
Sbjct: 6   SEADPIRIIAVDDHSLLRNALCELL------DLQGDLRVVAQTDSSAALVELALEHRAEV 59

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  + +     +V  +           L     L   +                 Y 
Sbjct: 60  VLLDVEMPNHHAPTVVGEL--------SRALPDLQVLILSMHGDPQLIQELLRQGARSYL 111

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
             +     +   +              +  +                       L+ RE 
Sbjct: 112 HKSTHHETLLAAIR------------NIRNVDPHTIIAVPQQGRPSAFAPAPSGLSPRER 159

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E LT ++   ++ +IA  LG++  TV  ++ +I  K    +R  A+  A+   ++
Sbjct: 160 EVLTLVAHAMSNRQIASELGVAEGTVKRHLRNIFEKLEAVSRVDAVNKAIDAQLI 214


>gi|269926239|ref|YP_003322862.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789899|gb|ACZ42040.1| two component transcriptional regulator, LuxR family [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 225

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 10/175 (5%)

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
             + D ++       L     +         ++            +             Y
Sbjct: 46  AVRPDLLLMDVSEARLRSTSIIESISSKAPEVRIV---VLAEDKDILLVFDALRVGARGY 102

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +   D AR    L  +         D   ++       + +   Y         LT RE
Sbjct: 103 ITKEVDYARFIYVLRRVIHGEITFTPDLARKL------VSELTTRYSSKNEPFALLTSRE 156

Query: 191 VECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            E L+ +  G  ++ ++A  LG++ +TV  +  +I+ K   K R+   AYA R N
Sbjct: 157 REILSLLVHGVSSTRDLAEKLGVTEHTVKFHFRNILSKLHLKNRAQVAAYAARYN 211


>gi|90420379|ref|ZP_01228287.1| putative methanol utilization control regulatory protein MoxX
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335713|gb|EAS49463.1| putative methanol utilization control regulatory protein MoxX
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 209

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 35/235 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       V  L    + ++ +   +           L               
Sbjct: 1   MKILIVDDHTVVRDGVRRLVETLE-VSEIGEAETPSEALAEFRRL--------------- 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + +    D++R +            +         +  +    +      
Sbjct: 45  RPDVVVLDINLKNGSGLDVLRRLRAD-----DPKARIVVFSM---YSDIVYAASARREGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y + +     +   + +       +  +    +   A   A              +LT
Sbjct: 97  LGYVAKSAPSDELVEAIEMALKNEPYVDSETAALMATHAGRGAG-----------PDDLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            RE++ L  + EGK+  EIA  LG++  T+ N    I  K   +  S  + +A+ 
Sbjct: 146 RRELQILHMLGEGKSLTEIAEGLGVAYKTIANTSTRIKEKLGVERTSDLVRFAIE 200


>gi|288800041|ref|ZP_06405500.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288333289|gb|EFC71768.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 200

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVI 209
              + +    +L  Y     K+       +      LT RE+E L+ + +G  + EIA I
Sbjct: 99  PEEELIRSFLVLEQYAHGGGKNLPPLKMPESLTKKILTDREIEVLSLLVQGHINKEIATI 158

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L IS  TV  +  +I+ K   K+ S    YAV +  V
Sbjct: 159 LHISLTTVITHRKNIVEKLGMKSVSALTIYAVTHGYV 195


>gi|323529151|ref|YP_004231303.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323386153|gb|ADX58243.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 212

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +S +    D  A  + +   +   + +  + E   G +   + R        LD  +   
Sbjct: 1   MSTILIIDDHPAFRMIVRLQLMQLLSVEEVVEADNGQTAVEMARQYKPDLAILDLDIPRI 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  + L        +         P                + +   + ++  I 
Sbjct: 61  SGLDVIPRLKLVHP----PIRVMVLSGHDPAT----FAPRAMRSGVHGFVGKSQEMKEIM 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     +           +A        + +   G+   L+ +E+  L  +S+G 
Sbjct: 113 RGVEAVLAGYTVFP--VAPNGASIAPGV-----TPNGDEGRIMLLSDKELVILQMLSKGM 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++  I   L IS  TV+++   IM K   K+    I  A R  I
Sbjct: 166 SNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARRCRI 209


>gi|224026499|ref|ZP_03644865.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
 gi|224019735|gb|EEF77733.1| hypothetical protein BACCOPRO_03256 [Bacteroides coprophilus DSM
           18228]
          Length = 194

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT-FDVARIRIGLMLLFPKGRII----- 154
            + R    F  +    P+           Y + T F + R    ++L   +   +     
Sbjct: 31  AVIRSFSTFEALIDDTPDMYAHYFVSAQIYFAHTSFFLNRRPRAIVLAVGEQPALNGVPT 90

Query: 155 ------LRDRLWEIGLLAAYQAN-MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                     +  I  L  Y  +            + EL+ RE+E L  I++G  + EIA
Sbjct: 91  LNICLPQDQLVQAIMQLRKYGHSMHPHPSTQQQDTEHELSPREIEVLVLITKGLINKEIA 150

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             L IS  TV ++  +I  K   K+ SG   YAV    +
Sbjct: 151 DKLNISLTTVISHRKNITEKLGIKSVSGLAIYAVMRGYI 189


>gi|332306220|ref|YP_004434071.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173549|gb|AEE22803.1| two component transcriptional regulator, LuxR family [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 218

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 53  TEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPV 112
           TE + ++  L+   D      LD  +       L   + +  +     V+    E     
Sbjct: 33  TEDIESTLELIKSNDEIDLILLDLNMPGMTG--LNGLLDVRNECPTTPVVIVSAET---- 86

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                + +   +     + + +     I   +  +F     +  + +      +    N 
Sbjct: 87  --EKQKILQTLSYGAVGFIAKSSSKKVIGEAIQSVFEGNVYLPPNIMR-----SQTVDNQ 139

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
               ++   K   LT RE+  L  +++G+ + +IA  L IS  T+ ++++SI++K     
Sbjct: 140 TNECEISPEKISLLTRRELIVLKHLTKGEANKQIAYNLHISETTIKSHVSSILKKLGATN 199

Query: 233 RSGAIA 238
           R   + 
Sbjct: 200 RVKVVV 205


>gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681]
 gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681]
          Length = 75

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K RS A
Sbjct: 4   GNDHKNKFLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQA 63

Query: 237 IAYAVRNN 244
           +   +R  
Sbjct: 64  VVELIRLG 71


>gi|326442335|ref|ZP_08217069.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 203

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 60/227 (26%), Gaps = 25/227 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
             V  +    D       L   +S    +  + E   G     + R        LD  + 
Sbjct: 1   MTVVRVLLADDEHLIRGALAALLSLEDDLDVVAEAASGTEALAMARAHRPDVAVLDLQMP 60

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +   +           L     +                     +   T    R
Sbjct: 61  GADGVSVATSLRGE--------LPHCRTMIVTSHGLPGHLKRALEAGVRGFVPKTLSAQR 112

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R +  +                   D     D  LT RE E L   ++
Sbjct: 113 LAEIIRAVHAGSRYVDPELAA----------------DAISAGDSPLTAREAEVLALAAD 156

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G    EIA    +S+ TV NY++S + K   + R  A+  A     V
Sbjct: 157 GAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRGWV 203


>gi|90581277|ref|ZP_01237074.1| putative transcriptional regulator, LuxR family protein [Vibrio
           angustum S14]
 gi|90437516|gb|EAS62710.1| putative transcriptional regulator, LuxR family protein [Vibrio
           angustum S14]
          Length = 209

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 33/239 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  IV+  +     + +      +   A ++  D   S    +                 
Sbjct: 4   QHTIVIADDHPLFRNALFQSVHMAISGANLLEADSLDSLFALLEK--------------E 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  + L ++      +                     +  
Sbjct: 50  PDVDLLLLDLKMPGANGMSGL--IQLRQQYPELPTV------VISASEEEKVIRQVHSHG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D+  +   L  +         D            A+   +Y     K   L
Sbjct: 102 AFGFIPKSSDMRALISALNQVLDGEPFFPED-----------IADNNNAYRDLADKIATL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+    + ++
Sbjct: 151 TPQQYKVLGMLSDGLLNKQIAYELTVSEATIKAHMTAIFRKLEVKNRTQAVILLQQLDL 209


>gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 241

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 75/263 (28%), Gaps = 40/263 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN  I+++ ++L    +     +  +  +   ++ +  +         +           
Sbjct: 1   MNV-IKKIRVLLIERGDLAQLGLRKVLEQYKEVSLVSQVSSLRHVAALLKK--------- 50

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D +V +  P      +    ++                  +    I
Sbjct: 51  -----------SNPDVVVINLEPSTNTDALLRLVRNWKVAFFPNIL--LLSWDTSEEFVI 97

Query: 121 TPPAGMDNRYCSLTF-------DVARIRIGLMLLFPKGRIILRDRLWEIG---------- 163
           +      + Y            D +     L   +     I  +    +           
Sbjct: 98  SAFGAGVDSYYLKRINFPKTNVDTSTFLDALKATYEGQHWIDPEIAGYLLKNSIKSPGNN 157

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                  N  +       ++  LT RE+  L  I  G T+DEIA  L +   TV  +I S
Sbjct: 158 FSGITLINSCEPDYYQILRENPLTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRS 217

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           ++ K     R+ A   A+R+ +V
Sbjct: 218 VLWKLCCDDRTQAAVQALRSGLV 240


>gi|187779787|ref|ZP_02996260.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC
           15579]
 gi|187773412|gb|EDU37214.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC
           15579]
          Length = 865

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E +  + EG ++ +I   L IS  TV  ++ +I  K     R  A+
Sbjct: 803 LTEREKEVMEILFEGASNKQIGERLNISLATVKTHMINIYSKLQVSNRVQAV 854


>gi|312200653|ref|YP_004020714.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231989|gb|ADP84844.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 203

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 59/229 (25%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ L+  +    ++       G      V         +D  
Sbjct: 4   IRVLLADDQHLVRGALAALLSLEDDIEVVGQVSR-----GDEVVAAVVTATPDVVLMDVE 58

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +              L    F                +       
Sbjct: 59  MPGIDGLAAAAAVQATR--------PATKVLILTTFGRAGYLRRAMEAGALGFVVKDAPA 110

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R++                               LTGRE + L   
Sbjct: 111 DALADAVRRVSRGERVVDPTLAA----------------STLASGPSPLTGRERDVLVAA 154

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G T  +IA  L +S  TV NY+++ + KT  + R  A+  A  +  +
Sbjct: 155 RDGATVADIAGRLFLSEGTVRNYLSAAIAKTGARNRLEALRTAEESGWL 203


>gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 93

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +     L+ RE+E L  ++ G T+ EI+  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   SAAKFQTAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVE 61

Query: 236 AIAYAVRNN 244
            + +A+   
Sbjct: 62  LVRWALHWG 70


>gi|119504418|ref|ZP_01626498.1| putative LuxR-family transcriptional regulator [marine gamma
           proteobacterium HTCC2080]
 gi|119459926|gb|EAW41021.1| putative LuxR-family transcriptional regulator [marine gamma
           proteobacterium HTCC2080]
          Length = 173

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 2/137 (1%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           ++   +      +  E  +  A     YC +     ++      +   G  +    +  +
Sbjct: 32  EQARLVVLSASPSESEAFSVLAAGARGYCHVESVPEQLVEVAQAVCAGGYWVPPALVQRL 91

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
              A   A     +        ELT RE +    + +G  + EIA  LG+   T+  ++ 
Sbjct: 92  ASAALSVAT--VQHSEVPEGFDELTEREYQVAMAVGKGLNNKEIASQLGLGERTIKAHLT 149

Query: 223 SIMRKTATKTRSGAIAY 239
           +   K   + R      
Sbjct: 150 TTFEKLHVRDRVQLALI 166


>gi|302552511|ref|ZP_07304853.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470129|gb|EFL33222.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 203

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 63/242 (26%), Gaps = 39/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ V ++L  ++      ++ L    D L  +              A             
Sbjct: 1   MEPVRLLLADDEHLIRGALAALLALEDDLMIVAEAATGPEAMAMARA------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   K D  V              +         +            L   +    
Sbjct: 48  -------HKPDVAVLDLQMPGADGVKVATSLRVELPACRVLIVTSHGRPGHLKRALE--- 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T    R+   +  +    R +  +                   D     D 
Sbjct: 98  AGVRGFVPKTVSAQRLAEIIRTVHAGNRYVDPELAA----------------DAIAAGDS 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G    EIA    +S+ TV NY++S + K   + R  A+  A    
Sbjct: 142 PLTVREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERG 201

Query: 245 IV 246
            V
Sbjct: 202 WV 203


>gi|302346377|ref|YP_003814675.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
 gi|302151055|gb|ADK97316.1| transcriptional regulator, LuxR family [Prevotella melaninogenica
           ATCC 25845]
          Length = 214

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            L     L  +  NM  +      K+   LT  E E L  I+ G T+ EIA     S +T
Sbjct: 118 VLQGQRFLCQHATNMILAPTALADKEIVALTKTETEILKEIALGATTREIAEKRFSSFHT 177

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           VN +  +I RK        AI YA+R+ +V
Sbjct: 178 VNTHRKNIFRKLGVNNVHEAIRYAMRSGLV 207


>gi|329889299|ref|ZP_08267642.1| transcriptional regulatory protein fixJ [Brevundimonas diminuta
           ATCC 11568]
 gi|328844600|gb|EGF94164.1| transcriptional regulatory protein fixJ [Brevundimonas diminuta
           ATCC 11568]
          Length = 219

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 63/225 (28%), Gaps = 30/225 (13%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGAS--------HFLLVRWDLFQEQ---KLDS 76
                  R+  +D    +        E +G           FL    +   E     LD 
Sbjct: 7   PADGPSGRICLVDDHAEFRQSAAWWLESLGYEVECWEEPAAFLEAMTERPAEPACFLLDV 66

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +L+        D+          +F      +P  +         +    F 
Sbjct: 67  RMPGMSGLELMEAARERGLDQ--------PVIFMTGHGDVPLAVEAMRRGAVTFLEKPFQ 118

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   + L F        D      L  AY             +   LT RE E +  
Sbjct: 119 EKALEEAIALAFRTAPSETEDETTASPLSLAY-----------QERLSRLTAREREVMDL 167

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  G  +  IA  LGIS  TV  + A IM K    T +  +  AV
Sbjct: 168 VVAGSYNKVIAYDLGISPKTVELHRARIMTKMEAPTLTHLVRMAV 212


>gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 198

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 6/167 (3%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L+   A    D    V+   T+   P        +       N       D A   
Sbjct: 35  HGDELLARYARQSVD----VVLVGTQRAVPTGVEATRRLVAAHPQANVIVFGAPDDAGSI 90

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISE 199
              +    +G +       E+    A+   +    +  V      +LT RE++ L  +S+
Sbjct: 91  AAAIAGGARGYLRWDASRPELVAALAHTLASTSVPTPRVPTDPGVQLTERELQVLRGMSQ 150

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GK++ +I   L +S +TV  +   + RK   + R+ A+A+  R  +V
Sbjct: 151 GKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|212640069|ref|YP_002316589.1| transcriptional regulator LuxR family [Anoxybacillus flavithermus
           WK1]
 gi|212561549|gb|ACJ34604.1| Transcriptional regulator LuxR family [Anoxybacillus flavithermus
           WK1]
          Length = 194

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L+ RE +    + +G ++ EIA  L +S +T+ N+I ++ +K   K RS  IA 
Sbjct: 135 QLSERERQVFFLLLKGYSNKEIAKELILSEHTIKNHINNLFQKLDVKRRSQLIAK 189


>gi|116071221|ref|ZP_01468490.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116066626|gb|EAU72383.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 239

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 84/231 (36%), Gaps = 8/231 (3%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            E RT  +  L  R  ++A    +    + T     +   VGA+       +      + 
Sbjct: 2   REIRTRSLPVLNDRRTVIASADRVL-ITALTHLFEGIGPLVGAATSEQDALNCLTANDVQ 60

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D          ++     +  L+    +  P+  T+   I          CS   
Sbjct: 61  LLVCTDLLEHGSGPGLVATAKAQHPQLRCLMLIQRPLLSTIDAAIAS---GCEGLCSRER 117

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 + ++       I +   +  +   +  + +      +       LT RE + L 
Sbjct: 118 LGDGGVLSVLQAMDSDGIHMDPTITGVCQQSRRRPSH----GIAPPLSDVLTLREEDVLR 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++ EIA  L ++ +T+ + + S++RK   + R+ A+  A ++N+V
Sbjct: 174 GLCRGLSNQEIADQLHLAVDTIKHAVTSLLRKLEARDRTQAVLVAFQHNLV 224


>gi|56459425|ref|YP_154706.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56178435|gb|AAV81157.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           loihiensis L2TR]
          Length = 198

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 64/221 (28%), Gaps = 25/221 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D       L   +      +      G      ++   +     D  + +    +
Sbjct: 3   ILLAEDQTMVRTALASLLRLESDYHVDEAVDGVDAQKKLQESDYDVLLSDIEMPNLSGLE 62

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           LV+     + +    ++          F+               +      +  +   L 
Sbjct: 63  LVQWAQQQQPNLRSVII--------TTFNRSGYIKRAIDSGVRGFLLKDAPINELIASLQ 114

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    ++I  + L  +  L  +                 LT +E + L   S+G ++  
Sbjct: 115 RVCLGEQVISNELL--LQALGQH---------------DPLTEKERKALRLASQGLSTQA 157

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I+  T  NY++  + K     R+ A   A +   +
Sbjct: 158 IAEQLFIAPGTARNYLSEAINKLHASNRTEAARIAHQKGWL 198


>gi|21223502|ref|NP_629281.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|9967644|emb|CAC05762.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 204

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L    + +  +  +           A                
Sbjct: 5   IKVLLAEDQAMVREALAALLGLEEDIEVVAQVARGDEVLDAARA---------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +            A +   +    ++         F       +      
Sbjct: 49  ----HGVDVALLDIEMPGATGIEAAALVHRELPAVKLV---VLTTFGRPGYLRSAMESGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A++   +  +    R+I                               LT
Sbjct: 102 DAFLVKDAPAAQLAEAVRRVLAGERVIDPTLAAA----------------ALAEGANPLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A     +
Sbjct: 146 DREREILRAAADGSTNAELASALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARNKGWL 204


>gi|116049932|ref|YP_791259.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585153|gb|ABJ11168.1| putative wo-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 225

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      V+ ++     +D  +      +L R +           L +   LF  +   L
Sbjct: 35  GEEALQAVQREIPSLVIVDLGLPGISGLELTRRLRQR--------LPQLRVLFFSLHDEL 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y +       +   +  +      + +     +              
Sbjct: 87  ALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLA--------CQSWE 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E    ++ G    E+A  LG+S  TV+N+++ + +K    T++  
Sbjct: 139 EQGGAALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAEL 198

Query: 237 IAYAVRNNIV 246
           +  A+ + ++
Sbjct: 199 VHRAIDSGVL 208


>gi|327313695|ref|YP_004329132.1| hemerythrin HHE cation binding domain-containing protein
           [Prevotella denticola F0289]
 gi|326944895|gb|AEA20780.1| hemerythrin HHE cation binding domain protein [Prevotella denticola
           F0289]
          Length = 318

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  +  L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 ITQSPDSNEVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|325269082|ref|ZP_08135703.1| transcriptional regulator [Prevotella multiformis DSM 16608]
 gi|324988703|gb|EGC20665.1| transcriptional regulator [Prevotella multiformis DSM 16608]
          Length = 318

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  +  L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 ITQSPDSNEVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|323435982|ref|ZP_01049465.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis
           MED134]
 gi|321496297|gb|EAQ39437.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis
           MED134]
          Length = 537

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E+  +A  +    +           L+ RE E L  +S+G T+ +I   L IS  TV  +
Sbjct: 457 ELQNVANTKEQTLQESVDQISTSHNLSKRETEVLLELSKGFTNKQIGEALHISIATVKFH 516

Query: 221 IASIMRKTATKTRSGAIAY 239
            ++I  K     RS  I  
Sbjct: 517 TSNIYAKLDVSNRSEVIKK 535


>gi|262089625|gb|ACY24722.1| NarL-family response regulator [uncultured organism]
          Length = 205

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 20/189 (10%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           A     V   L     LD  +      +L+    L +K            +   +F    
Sbjct: 37  AEAIQQVNEGLPDIILLDLGLPDGRGSNLLLHRELKDKVWI---------VVTTIFDDDE 87

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                       Y             L  +      +                       
Sbjct: 88  HLFEALRLGAQGYLLKDDLGEIFDAALSGILAGKPPLSAGIAR-----------RILQTF 136

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +D  L+ RE + L  ++ G +    A  LGI+ NT  +Y+ ++ +K    +R+ A 
Sbjct: 137 RPANQDSILSAREHKLLALVARGYSVQRAANELGITYNTAASYLKNVYQKLEVGSRAEAT 196

Query: 238 AYAVRNNIV 246
             A+   +V
Sbjct: 197 RKAIHMGLV 205


>gi|253996775|ref|YP_003048839.1| two component LuxR family transcriptional regulator [Methylotenera
           mobilis JLW8]
 gi|253983454|gb|ACT48312.1| two component transcriptional regulator, LuxR family [Methylotenera
           mobilis JLW8]
          Length = 205

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 23/183 (12%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +   +      +D  +      +L   +A  + +           +F      +P ++  
Sbjct: 44  VCPQECSGCAIVDYRMPEMDGLELQAELAKRDIN--------LPIIFLTGHGNIPTSVKA 95

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  + +      ++   +M    +               +        SY      
Sbjct: 96  MKAGAIDFLTKPVRREKLISVVMAAMIE---------------SEKTHAENASYKEAVKC 140

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE + +    +G  + +IA  LGIS  TV  + ++IM KT           A +
Sbjct: 141 IASLTEREYDVMLLAIQGHHNKDIARQLGISHRTVEIHKSNIMHKTGANHVLDLARIAHK 200

Query: 243 NNI 245
           + +
Sbjct: 201 SGL 203


>gi|228942278|ref|ZP_04104817.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975207|ref|ZP_04135765.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981845|ref|ZP_04142140.1| Two-component response regulator ComA [Bacillus thuringiensis
           Bt407]
 gi|228777957|gb|EEM26229.1| Two-component response regulator ComA [Bacillus thuringiensis
           Bt407]
 gi|228784486|gb|EEM32507.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817322|gb|EEM63408.1| Two-component response regulator ComA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942934|gb|AEA18830.1| two-component response regulator comA [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 213

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     M A          +      F    LD  + +    
Sbjct: 3   RVLIVDDHQIVGEGTKNMIELEEDMQAEYILNEQEALIKSDATPFDVYLLDMNMPNCSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +          ++      +   F+ L  +        +   S +     + + +
Sbjct: 63  ELAQKI--LHIQTDAKIILYTGFEYVSQFNLLINS------GISGIISKSASQQELLMAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++    L ++            +      K   LT +E+E L  +S+G ++ 
Sbjct: 115 RAAVNGYTLLPISLLRQLRT-------DDITTQQLENKTALLTQKELEILESVSKGSSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S   V   +  I +K    +RS A+  A+R  I+
Sbjct: 168 QIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGIL 209


>gi|319795618|ref|YP_004157258.1| autoinducer-binding domain protein [Variovorax paradoxus EPS]
 gi|315598081|gb|ADU39147.1| Autoinducer-binding domain protein [Variovorax paradoxus EPS]
          Length = 320

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 64/259 (24%), Gaps = 41/259 (15%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP-FDL 86
             S L+  ++      +    +  +   +G          L   +       + +   + 
Sbjct: 54  EASGLVGELLRARAPEARQRMVRGMLGSMGFDWLSYGTVSLVGGRVRTQSFFTAYANAEW 113

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPE------------------NITPPAGMDN 128
           V+    S   +     Q       P+   L +                  +     GM +
Sbjct: 114 VQRYFASNHMQVDPRHQETPLSSLPLTWDLEQIEAIAAAGTACAQQQVFLDDMRACGMHS 173

Query: 129 RYCSLTFDV----ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD------- 177
                   +        IG+         I  +   +  +L          ++       
Sbjct: 174 GMLFRVASLKNSNEHAVIGVQSQRSGRDWISSEIAGQALMLGFSVHEFLARHELTPSEVD 233

Query: 178 -----------VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                          +   L+  +   L  +  G +  EIA  L +S + V+ ++  + R
Sbjct: 234 AQASLSSLQHAARPPEGAHLSPMQQRILAHLLHGLSDKEIAQRLSVSAHAVDYHMRQLRR 293

Query: 227 KTATKTRSGAIAYAVRNNI 245
           + A + R            
Sbjct: 294 RFAVRNRLQLANAVQDAGW 312


>gi|282856682|ref|ZP_06265948.1| two-component response regulator [Pyramidobacter piscolens W5455]
 gi|282585447|gb|EFB90749.1| two-component response regulator [Pyramidobacter piscolens W5455]
          Length = 203

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 23/218 (10%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           + R++ ++        +    + +   S    +      E   +         D+     
Sbjct: 1   MTRIMIVEDQTMVRDALRNSLDGIEDFSVIAAIADAALAELYCERTSPDLVLMDVCTEND 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPEN---ITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            S  D    + +R   +   +   LPE            + +     DV  +   +    
Sbjct: 61  SSGLDAAAAIKKRFPRVRVVMMTGLPEVTFVERAREAGADSFVYKDLDVNGLAGVIRDTC 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               +    R   +                      ELT RE E LT I +G +  EIA 
Sbjct: 121 AGKSVYPGRREEVLNF-------------------GELTRREREVLTLICDGLSRREIAE 161

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L I+ N+V  + ++I+ KT  ++ +    +AV N  +
Sbjct: 162 RLNITINSVKTHFSNILSKTGYESVAKLAIFAVSNGFI 199


>gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341]
 gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341]
          Length = 224

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEIA 207
               IL+D +W    LA      +++ +         +LT RE + +  +  G ++ EIA
Sbjct: 121 GMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIA 180

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             L +S NTV  ++ ++ +K   K R  A+ +A
Sbjct: 181 DKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213


>gi|218892061|ref|YP_002440928.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218772287|emb|CAW28069.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 223

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      V+ ++     +D  +      +L R +           L +   LF  +   L
Sbjct: 35  GEEALQAVQREIPSLVIVDLGLPGISGLELTRRLRQR--------LPQLRVLFFSLHDEL 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y +       +   +  +      + +     +              
Sbjct: 87  ALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLA--------CQSWE 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E    ++ G    E+A  LG+S  TV+N+++ + +K    T++  
Sbjct: 139 EQGGAALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAEL 198

Query: 237 IAYAVRNNIV 246
           +  A+ + ++
Sbjct: 199 VHRAIDSGVL 208


>gi|73539358|ref|YP_299725.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72122695|gb|AAZ64881.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 209

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 70/220 (31%), Gaps = 18/220 (8%)

Query: 33  LARMIPLDCTVSWTMRMYA-LTEYVGASHFL-----LVRWDLFQEQKLDSIVSSDWPFDL 86
           +A ++ +D   +  + M + L++ +G  H L         +  ++ K + ++       +
Sbjct: 1   MATVLIVDDHPALRLVMKSQLSQLLGVEHILEADNGQCAIEAVRQHKPELVMLDLDIPRI 60

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
                 +     +  ++                          + S T D+  I   +  
Sbjct: 61  GGLDVATRVRDIHPPVRILVVTAL---DPAVFVSRSWQAGVQGFVSKTQDIREILRSVES 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +     +                 +              L+ +E+  L  ++ G +   I
Sbjct: 118 VLAGYTVFPALARR---------GSPGPVLCGDDENLRRLSDKELVVLKMLARGLSYKTI 168

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  L IS  TV++Y A IM K    +    + +A R  +V
Sbjct: 169 SGELFISNKTVSSYKARIMTKLQVSSLVELVDFARRCRLV 208


>gi|224282877|ref|ZP_03646199.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 230

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 68/223 (30%), Gaps = 20/223 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  +D        +  +    G +  L    D     +       + P  L+  + +  
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTADVLWSANDGGAAIRRHFESPENHPDILLIDIQMPG 61

Query: 95  KDKYYNVLQRP------TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +      +          LF   F                Y     DVA I   L  + 
Sbjct: 62  MNGLDAAREILTKDPAARILFLTTFSDQAYIEQAMRLGTKGYLIK-QDVAAIAPALHAVM 120

Query: 149 PKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLT 195
               ++  D + ++       G      A+      +  G+         L  RE +   
Sbjct: 121 AGQVVLGADVIGKLTGPTAGAGYKGPDDASDTAGDGIPHGRRTSDGIDQLLNERERDIAA 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++EG  + +IA  L +S  TV N I++++ K A   R+    
Sbjct: 181 LVAEGLDNRDIAARLYLSEGTVRNRISAMLDKLALTNRTQLAI 223


>gi|169828201|ref|YP_001698359.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992689|gb|ACA40229.1| comA, srfB, comAA; two-component response regulator. potential
           cognate sensor kinase is comP [Lysinibacillus sphaericus
           C3-41]
          Length = 208

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S      ++   +        ++  D L  +   +    +          ++  L+
Sbjct: 98  DGLLSKLATKEQVIQTIQAALRGEILLAADFLDFVQQRSNLPNSR---------QEVLLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E E L  +++G T+  IA  +G+++ TV NY++ +  K   ++R+ A+  A     +
Sbjct: 149 DKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVAKEKAWI 207


>gi|154252823|ref|YP_001413647.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156773|gb|ABS63990.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 208

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 16/216 (7%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV-RWDLFQEQKLDSIVSSDWPFDLV 87
            SD    ++ +D  ++    + +L   +G          +L +    D          L 
Sbjct: 1   MSDTEVCVLIIDDDLAMRESLESLFRSLGHEARAFATGRELVESDLPDMPSCLVLDVRLP 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               L  + +   +      +F      +P ++         + +  F    +   +   
Sbjct: 61  GASGLELQLELLRLGFDLPIVFITGHGDVPMSVAAMKAGAIEFLTKPFREQELIDAVH-- 118

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             +G  I R+R   +  LA               +   LT RE E +  +  G+ + +IA
Sbjct: 119 --RGVEIDRERRAALTSLAEL-----------RSRFETLTPREREIIALVVTGQMNKQIA 165

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L +S  TV  + A +MRK   KT    + YA R 
Sbjct: 166 AELNLSEVTVKVHRAQVMRKMQAKTLPDLVRYADRL 201


>gi|206560573|ref|YP_002231338.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|99652813|dbj|BAE94658.1| response regulator [Burkholderia cenocepacia]
 gi|198036615|emb|CAR52512.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 212

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 38/236 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTR-SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q  + +  +DE     +  L       +      +  +          +           
Sbjct: 9   QETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFLDAYQPAQQAGQ----------- 57

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +S     +L   +                 +F      +P  ++    
Sbjct: 58  ---IACLILDVRMSGMSGLELQERLIADN--------AALPIIFVTGHGDVPMAVSTMKK 106

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    FD A +R  +  +  K               A  ++   +       +  +
Sbjct: 107 GAMDFIEKPFDEAELRKLVERMLDK---------------ARSESKSVQEQRAASERLSK 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+
Sbjct: 152 LTAREQQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADVLRLAL 207


>gi|13471106|ref|NP_102675.1| two component responce regulator [Mesorhizobium loti MAFF303099]
 gi|14021850|dbj|BAB48461.1| two component responce regulator [Mesorhizobium loti MAFF303099]
          Length = 212

 Score = 88.8 bits (219), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 56/207 (27%), Gaps = 32/207 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFDLVRC 89
           +D        +  L   VG                  D      LD  +      DL   
Sbjct: 17  VDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPACFVLDVRMPGQSGLDLQHL 76

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +          V+      F      +  ++         + +           + +   
Sbjct: 77  LLTKGIQT--PVV------FLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFLDAVSVAVA 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
             +            +A Y                 LT RE E L ++  G  + +IA  
Sbjct: 129 TDKARRAASTAARKTMALY---------------ETLTPREREVLRFVVAGAMNKQIAFD 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGA 236
           LGIS  TV  + +++M+K   ++ +  
Sbjct: 174 LGISEITVKLHRSNMMKKMNARSLTHL 200


>gi|218700457|ref|YP_002408086.1| DNA-binding transcriptional regulator CsgD [Escherichia coli IAI39]
 gi|218370443|emb|CAR18250.1| DNA-binding transcriptional activator in two-component regulatory
           system [Escherichia coli IAI39]
          Length = 216

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|167819038|ref|ZP_02450718.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 91]
          Length = 267

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 21  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 80

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 81  PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDD 139

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 140 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASA 199

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 200 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 259

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 260 FASARGLI 267


>gi|332291578|ref|YP_004430187.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169664|gb|AEE18919.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 476

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E+   A  +    +           L+ RE E L  +S+G T+ +I   L IS  TV  +
Sbjct: 396 ELQATADTKERTLQESVAQLSTTHNLSKRETEVLLELSKGYTNKQIGEELHISIATVKFH 455

Query: 221 IASIMRKTATKTRSGAIAY 239
            ++I  K     RS  I  
Sbjct: 456 TSNIYAKLDVSNRSEVIEK 474


>gi|319793602|ref|YP_004155242.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315596065|gb|ADU37131.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 212

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 30/218 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +       D L+ +I     +             G     +          LD  +   
Sbjct: 16  LIDDDQAVRDGLSLLIG-TVGLRVQGWADPQAFIDGFDRASVGAI------VLDVRMPGI 68

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               ++  +     D+          +      T+             +     D  ++ 
Sbjct: 69  SGLTVLDRLMAQGVDQ--------PVIMLTGHGTVEMCRRAFKAGAAEFLEKPVDDEQLL 120

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L     +                       ++ +    +  +L+ RE E L +I +G 
Sbjct: 121 EALQQAVRQHV---------------RTRERSQADNAARERVAQLSEREREVLAFIVQGL 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T+ EIA  L +S  TV  + A++  K    + +  I  
Sbjct: 166 TNKEIARTLALSPRTVETHRANLFAKLDCDSLAQLIRR 203


>gi|24374816|ref|NP_718859.1| LuxR family DNA-binding response regulator [Shewanella oneidensis
           MR-1]
 gi|24349500|gb|AAN56303.1|AE015768_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis
           MR-1]
          Length = 206

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT  +   L  I+ G ++  IA  L IS  TV  +I++I  K   K R+ A   
Sbjct: 148 TLTPSQFRVLHLIAAGHSNKTIADSLNISEKTVKAHISAIFEKLDVKNRTQAALL 202


>gi|2598025|emb|CAA03999.1| styrene response regulator [Pseudomonas sp. Y2]
          Length = 207

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 22/205 (10%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD----SIVSSDWPFDLVRCMALSE 94
           +D  +S    +  L    G           F E +       +V       +       +
Sbjct: 10  VDDDLSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQ 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
                + +      F      +P  +         +    F+   +   +       + +
Sbjct: 70  LTAISDGIPIV---FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAI------EQGL 120

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
             D          YQ     S          LT RE + L     G  + +IA  LGI+ 
Sbjct: 121 QLDAERRQARATQYQLEQLFSS---------LTVREQQVLQLTIRGLMNKQIAGELGIAE 171

Query: 215 NTVNNYIASIMRKTATKTRSGAIAY 239
            TV  +  +IM+K   ++ +  +  
Sbjct: 172 VTVKVHRHNIMQKLNVRSLANLVHL 196


>gi|149915179|ref|ZP_01903707.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
 gi|149810900|gb|EDM70739.1| phosphogluconate dehydratase [Roseobacter sp. AzwK-3b]
          Length = 201

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 56/222 (25%), Gaps = 25/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMY-ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D       +   +        +    +  +  +           LD  +      
Sbjct: 4   LLLADDHGLVRETIADYLRSQGGFEVSAAGSLDEAMAIETEQGPHDLVLLDYSMPGMDTL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
             +  M                        +              +   T     +   +
Sbjct: 64  AGLARMKE---------HAGCPVAILSGTASADVARRALRAGAAGFLPKTLGPDMLIAAV 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G     + L E                     D  LT RE++ L  ++EGK + 
Sbjct: 115 HEMLGGGIYRPIEFLAEA---------------EASPLDVALTPRELDVLKGLTEGKANK 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L I   TV  ++ ++ RK   + R+ A        +V
Sbjct: 160 EIARELDIQEVTVKLHVKTLSRKLQARNRTHAAMLGRDLGLV 201


>gi|121610244|ref|YP_998051.1| two component LuxR family transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gi|121554884|gb|ABM59033.1| two component transcriptional regulator, LuxR family
           [Verminephrobacter eiseniae EF01-2]
          Length = 222

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 56/221 (25%), Gaps = 18/221 (8%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D           +        + E       +   +        +D ++      D
Sbjct: 9   LIVDDHAVVRSGYRSYLEQVPGFQVVAEADCANEAYAQYKRMHPDVVIMDIMLQGASGID 68

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
             R +  +         +            L + +               D   +R   +
Sbjct: 69  ASRRILSNH-----PGAKILIFSMYVSPVLLQQALNV---GVLGAVGKQCDPDTLREAAI 120

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R +       +        + +      +     L+ RE E    +  G    E
Sbjct: 121 AVAGGDRYLDASMAQSL------VFSRYDRGQKIFDA---LSPREFEIFLLLISGAPVKE 171

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV N  + I +K    +    +  AV  +IV
Sbjct: 172 IAQALNLSAKTVANRASMIRQKLGVSSDIQLVKLAVAADIV 212


>gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 178

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L     +    +         +LT RE++ L  +S+GK++ +I   L +S +TV  + 
Sbjct: 93  AALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHA 152

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + RK   + R+ A+A+  R  +V
Sbjct: 153 RRLFRKLGVRDRAQAVAHGFRRGLV 177


>gi|183602522|ref|ZP_02963887.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190596|ref|YP_002967990.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196002|ref|YP_002969557.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218163|gb|EDT88809.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240248988|gb|ACS45928.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250556|gb|ACS47495.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289178334|gb|ADC85580.1| hypothetical protein BIF_00316 [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295793583|gb|ADG33118.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 228

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 66/238 (27%), Gaps = 22/238 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + +  NI L   D    S++               +                    H
Sbjct: 5   MNPDSEPWNIALVDNDALVRSYLETYLGGLPEFNICWSMQSGRDAVEA---------YHH 55

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            +     +      D  +     F+L   +          +L   +          P   
Sbjct: 56  SIACTNCVPDLIVTDLSMHGMSGFELCATIRFENDHT--PIL-GCSSYMI-----EPYER 107

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                          ++A++  G+  L     ++  + +                     
Sbjct: 108 DAVNNGMQGLLLKN-ELAQLADGMRTLLSGQPLLKSNGMP--YETPQQAHERLLMQGKPA 164

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                ++  E   +   SEG ++  IA   G S +TV  YI+  MRK   K+R+ A+A
Sbjct: 165 --IMSMSPNEQAVMELCSEGLSTRTIAEETGDSESTVKTYISRAMRKLRAKSRAEAVA 220


>gi|256389849|ref|YP_003111413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256356075|gb|ACU69572.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 214

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 25/221 (11%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-----KLDSIVSSDWPFDLVRC 89
           R++  +        M  L E  G      V       +     + D  V           
Sbjct: 2   RVVLAEDLFLLRDGMIRLLEAYGFEIAAAVGDGPALVEALVNERPDVAVVDVRMPPTFTD 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENIT--PPAGMDNRYCSL--TFDVARIRIGLM 145
             L    +   V+     L    +                  Y      FD       + 
Sbjct: 62  EGLRAVLEARQVVPGLPVLVLSQYVEQLYAGELLADGAGAIGYLLKDRVFDSDSFVDAVR 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   G ++  + +           +   +          LT RE E L+ ++EG+++  
Sbjct: 122 RVAGGGTVMDPEVI-----------SKLLARGARKEPLGALTDREREVLSLMAEGRSNAA 170

Query: 206 IAVILGISRNTVNNYIASIMRKTAT-----KTRSGAIAYAV 241
           IA  L I+   +  + ++I  K          R      A 
Sbjct: 171 IAERLVITERAIAKHTSNIFMKLGLPESGDDNRRVLAVLAY 211


>gi|238028111|ref|YP_002912342.1| putative DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877305|gb|ACR29638.1| Putative DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 276

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +  ++   D +R   +  L  + D   R    +    W   M  L         ++    
Sbjct: 1   MRFMVLSSDAERRDGLRALLRQID---RHGGHNDAKDWRQAMR-LVRQQSFDLIVV---- 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                            D +  M L +                    +        +   
Sbjct: 53  -----------------DFLSAMRLDDLRALCGACAPTPVAMLVDTTSPAIAPDQFSTGV 95

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--- 184
                       +     ++   G  +    L  +   AA Q    +   +   +     
Sbjct: 96  QGVVPRGMGAHLVIRAFEMVLLGGYYVPPCALNLLDADAAEQRATRRLGSIPLRRQPSIG 155

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ R+ + + ++  G T+  IA  LGIS  TV  ++ASI ++     R+ A+  A+ N 
Sbjct: 156 TLSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV--AIYNG 213

Query: 245 IV 246
            +
Sbjct: 214 WL 215


>gi|256391094|ref|YP_003112658.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357320|gb|ACU70817.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 200

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 30/229 (13%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V         LA ++ L   +    +        G +   L          LD  
Sbjct: 2   IRVLLVDDETLLRTALASLLSLSGEIEIVAQA-----ADGLTAVALAETCDPDVIVLDLE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + VR +  +   +          +               A     +   + D 
Sbjct: 57  MPGIDGIETVRRIIAARPAQ--------AVVMLTRHGRAGVLRMALAAGVRGFLLKSVDP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   ++ +    R I  +                         D  LT RE++ L   
Sbjct: 109 TELERVIIHVHSGKRWIDAEV-----------------SAAAMTDDCPLTDRELDTLRLT 151

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EG +  EI+  L ++  T+ NY++S M+KT   +R  A   A     +
Sbjct: 152 TEGLSVREISTRLHLASGTIRNYLSSAMQKTGGSSRHAAARVARERGWL 200


>gi|121606485|ref|YP_983814.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595454|gb|ABM38893.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 214

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 23/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R   V           R++  +  +          E        LV         +D  
Sbjct: 2   IRILLVDDHAVVRTGYRRLLGAEPGLQVVGEAARADEA-----NALVLQTTPDVALVDLS 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      + +R M                 L   +               + Y +   + 
Sbjct: 57  LRGSSGIEAIRGMLARR--------PVLRVLVLSMHEDAGHITQALRSGAHGYLTKHCEP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +  G+  +    R+   +    +   A    + F            LT RE E L   
Sbjct: 109 EEVIDGIRRIALGKRVFSPEVAQILAEQALDGEDAFAQ----------LTPREFEVLRLH 158

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G+ +  IA  L +S  T+ N +  I +K   +     +  A R+ ++
Sbjct: 159 VQGQPASCIAGALQLSPKTILNNLTLIRQKLDVENDFKLLQLAARHGLM 207


>gi|119776315|ref|YP_929055.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768815|gb|ABM01386.1| two component transcriptional regulator, LuxR family [Shewanella
           amazonensis SB2B]
          Length = 191

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 58/213 (27%), Gaps = 28/213 (13%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL----FQEQKLDSIVSSDWPFDLV-RC 89
           R+  +D   +    +  +    G         +             ++       L    
Sbjct: 2   RLFLVDDDEAIRDSLTYMLTQCGRQLTSFASAEAFLAQADITLPGCLILDSRMPGLSGEA 61

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +     ++          +F      LP  +         +       A +   +     
Sbjct: 62  LQHELVNQQSP----LGIIFLTGHGDLPMALAAFREGACDFFQKPVQAAPLCDAIDKAEA 117

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +                   +           K   L+ RE + L  +++G T+ +I+  
Sbjct: 118 E-------------------SQRRYEVAGLRLKLARLSERESQVLRLLTDGLTNKQISET 158

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           L +S  T+  + AS+M+K      +    +A R
Sbjct: 159 LYLSLRTIEVHRASMMKKLGVHNLAELGRFACR 191


>gi|116051988|ref|YP_789169.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296387526|ref|ZP_06877001.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313109383|ref|ZP_07795345.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115587209|gb|ABJ13224.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881847|gb|EFQ40441.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 209

 Score = 88.8 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 34/239 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWD 67
            +++  +       V  L  +                   +  + E   G     LVR  
Sbjct: 3   TVLIVDDHPVIRLAVRVLLEKH-----------------GLQVVAETDNGVDAIQLVREH 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       ++  +   E         R   L                   
Sbjct: 46  EPDVVILDIGIPKLDGLTVISRIKSLEL--------RTQVLVLTSQSAEAFCKRCIQVGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +   D+  +   L  +              +G                      L+
Sbjct: 98  RGFVNKEEDLNNLINALNAVIAGYTFFPSLTFDTLGT--------PPERISESELIGLLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+  L  ++ G ++  I   L +S  TV+ Y   +++K    +      +A RN+++
Sbjct: 150 DREMIVLQHLAMGYSNKAIGEKLFLSNKTVSTYKTRLLQKLGLGSLVDLAEFAKRNSLI 208


>gi|328886268|emb|CCA59507.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 203

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 58/230 (25%), Gaps = 29/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R      +      L  ++ L+  +     +       G                +D 
Sbjct: 2   PIRILLAEDMNMVRGALVALLDLEDDLEVVCELER-----GDQIVPSALEHRPDVAIIDI 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +           +           L     L               +     +      
Sbjct: 57  DLPGTDGLTAAAELREQ--------LPECRALILTSLGRPGALRRALSAQVAGFLLKDAP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +    R+I                N   +          LT RE E L  
Sbjct: 109 PNELAEAVRNVAAGRRVI----------------NSQLALSAWNSSQSPLTTRETEVLRL 152

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +EG    EIA  L +S  TV NY+ S++ K   + R  AI  A+  + +
Sbjct: 153 AAEGLEPIEIAGRLRLSLGTVRNYLTSVVTKLNARNRVDAIKIAMDADWL 202


>gi|307329198|ref|ZP_07608364.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
 gi|306885228|gb|EFN16248.1| two component transcriptional regulator, LuxR family [Streptomyces
           violaceusniger Tu 4113]
          Length = 190

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 29/218 (13%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             + LA ++ L+  +    ++       G       R        LD  +      +   
Sbjct: 2   VREALAALLGLEDEIEVIAQVAR-----GDEVVDAARAHRPDVALLDIEMPGMSGIE--- 53

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             A +   +    ++         F              + +       A++   +  + 
Sbjct: 54  --AAAALHRAAPGIRIV---ILTTFGRPGYLRRAMESGADAFLVKDAPAAQLADAIRRVL 108

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
              R+I                               LT RE E L   ++G T+ E+A 
Sbjct: 109 RGERVIDPTLAAA----------------ALVDGASPLTAREREVLHASADGSTNAELAR 152

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S  TV NY+++ ++KTA + R+ A+  A     +
Sbjct: 153 ALHLSPGTVRNYLSTAIQKTAARNRAEAVRIAREKGWL 190


>gi|288927582|ref|ZP_06421429.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330416|gb|EFC69000.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 198

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWG--KDFELTGREVECLTWISEGKTSDEIAVIL 210
           +     +  I  L  Y     ++        +   L+ RE+E L+ I +G  + EIA  L
Sbjct: 98  VPEEQLVRSILQLEQYAHAHGRNLPPLPHALQMKILSDREIEVLSLIVQGLINKEIADRL 157

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            I   TV  +  +IM K   K+ S    YAV +  V
Sbjct: 158 NIGLTTVITHRKNIMDKLGMKSVSALTIYAVMHGYV 193


>gi|209696260|ref|YP_002264190.1| probable CsgAB operon transcriptional regulatory protein
           [Aliivibrio salmonicida LFI1238]
 gi|208010213|emb|CAQ80542.1| probable CsgAB operon transcriptional regulatory protein
           [Aliivibrio salmonicida LFI1238]
          Length = 215

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
           +V  I  G+  +      + R    ++  +           +        LT RE E L 
Sbjct: 107 NVDVISEGVKKIIDGEMWLSRKITNDLISI------YRSKQNGILTSSVSLTTREKEILK 160

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +S G ++ +IA  L +S NTV  ++ ++ +K   K R  A+ +
Sbjct: 161 LLSLGASNIDIANTLFVSENTVKTHLHNVFKKLNVKNRLQAMIW 204


>gi|269795786|ref|YP_003315241.1| CheY-like receiver domain/HTH DNA-binding domain-containing
           response regulator [Sanguibacter keddieii DSM 10542]
 gi|269097971|gb|ACZ22407.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 219

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +  +    G      +         L+  +S+   ++L+  +              P   
Sbjct: 28  LEVVAAVDGHEALPTITTSRPDVVLLELRLSTRDGWELLTDIVS----MDDP----PAVA 79

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                 +        +   + +     D  R+   +  +   G ++       I      
Sbjct: 80  VLTSAGSREHVGRALSAGASGFLDKGSDPRRLPALVRSVAAGGVVLSPAASRRIVE---- 135

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             ++  + +    +   LT RE + L  ++ G ++ +I   L +SR TV +++++I+ K 
Sbjct: 136 -HHLGCADEAAVRRLTSLTCRERQVLAHLATGASNVQIGAALHLSRGTVKDHVSAILAKL 194

Query: 229 ATKTRSGAIAYAVR 242
              +R  A   A R
Sbjct: 195 GVASRLEAALVADR 208


>gi|237801066|ref|ZP_04589527.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023923|gb|EGI03980.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 208

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L        + + +    
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALACAVREDGHTSEL---- 142

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T   
Sbjct: 143 -----ELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVE 197

Query: 236 AIAYAVRNNIV 246
            I  A RN++V
Sbjct: 198 LIEMAKRNSLV 208


>gi|189461728|ref|ZP_03010513.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
 gi|189431488|gb|EDV00473.1| hypothetical protein BACCOP_02392 [Bacteroides coprocola DSM 17136]
          Length = 215

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 18/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLD-CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
           + HL    +     + +    +     + ++ E VG     L    +      DS+V  D
Sbjct: 1   MRHLILADNQAITRLGVKYLALEAGRELSSIKEAVG-----LQELSMMLSSYPDSVVIID 55

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
           +   L  C A           Q    LF               G+         DV  + 
Sbjct: 56  Y--TLFDCTADQLWILKERFPQSVFVLFSDALSESFIRRMVLGGIQFSLLFKDSDVHEV- 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                       +         +    ++ +++          +LT  E E L  ++ GK
Sbjct: 113 ---------AACLDEAEQGRQYICMKAKSWLYEKERDAVSDMPQLTMTEKEVLRSLTLGK 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+ EIA    +S  TV  +  +I RK        AI YA+R  IV
Sbjct: 164 TTKEIAAERFLSVYTVMTHRKNIFRKLNVNNAQEAIRYALRAGIV 208


>gi|221134366|ref|ZP_03560671.1| two-component response regulator [Glaciecola sp. HTCC2999]
          Length = 213

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 59/242 (24%), Gaps = 34/242 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  +NIVL  + +     +  L      L  +   +   S                    
Sbjct: 1   MNTINIVLVDDHDLVLQAIELLIASEPQLNVIGAFNDAESALSS---------------G 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +       D  +      D +  +                 +   ++ +         
Sbjct: 46  IINDEVLVITDISLPGQNGLDFLSSLHALGLS--------VKSIVLSMYESPHYVEMAKE 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y S       +   +  +                      ++   +         
Sbjct: 98  QGVKAYLSKRDAGELLLTAISEVAKGNTFYSP-----------QISDTLGTQTEELSLYQ 146

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E    ++ G     +A  L I+  T + +  +I+ K    +      +A++  
Sbjct: 147 GLTDREKEIFILLALGGEVKGVATSLDIAVKTAHVHRRNILNKFGVTSVFELTRFAIKYG 206

Query: 245 IV 246
           ++
Sbjct: 207 LI 208


>gi|332664117|ref|YP_004446905.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332931|gb|AEE50032.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 211

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 35/246 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  + + + + +          +S L   +  L             + +           
Sbjct: 1   MIAQARPIRVGIIDGQSPIAKGLSLLINGTAGLQVAHVYASAKEAQVALNK-----DLPD 55

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            LL        ++L SI +      L++ + +SE++    V                   
Sbjct: 56  VLLFLLGQPDVEELSSISAIRKMLPLIKIIVVSEREDEDLVFHMLR-------------- 101

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    + +      ++   +  +   G  +  +    +       A+ FK      
Sbjct: 102 ----AGAGGFLTRDVSPLKLLEAIREIQDGGAPMTMNVARLV------VASFFK------ 145

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             D  LT RE E L+W++ GK+  +IA IL + + TV ++I +I  K    +++ AI  A
Sbjct: 146 NNDSLLTPREREVLSWMARGKSYTQIAEILFVDKETVRSHIKNIYGKLEVHSKADAIEKA 205

Query: 241 VRNNIV 246
               ++
Sbjct: 206 TLEKLI 211


>gi|189468407|ref|ZP_03017192.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
 gi|189436671|gb|EDV05656.1| hypothetical protein BACINT_04804 [Bacteroides intestinalis DSM
           17393]
          Length = 209

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              + H   + +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ 
Sbjct: 132 PCGNPHADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSV 191

Query: 234 SGAIAYAVRNNIV 246
           +G   YAV +  V
Sbjct: 192 AGLTIYAVMHGYV 204


>gi|134101534|ref|YP_001107195.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008185|ref|ZP_06566158.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914157|emb|CAM04270.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 237

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
                  L+              + +         Y +    +A +   +          
Sbjct: 68  LRTRDPGLRVVPMNVP---EKESDILAYAELGAAGYLTRGHSIAELVRTVRSAAAGEFRC 124

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                  +                       L+ RE E    + +G ++ EIA  L I+ 
Sbjct: 125 SPCVAAALS----------PGAAQSIVSAGLLSHREAEIAELLEQGLSNQEIARRLCIAL 174

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAV 241
            TV N++ +I+ K   + R+ A A+A 
Sbjct: 175 ATVKNHVHNILDKLGVRGRAEAAAWAR 201


>gi|116255188|ref|YP_771022.1| putative LuxR-type transcriptional regulator protein TraR
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259836|emb|CAK02931.1| putative LuxR-type transcriptional regulator protein TraR
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 234

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 68/227 (29%), Gaps = 22/227 (9%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
                  +    +  L E    S +   +         D  V S+   D ++     + D
Sbjct: 13  AVAHDDATLKAALADLAERFEFSGYDYAKLLPG-----DFYVISNLHPDWLKRSRKLDLD 67

Query: 97  KYYNVLQRPTELFCPVFHT-------------LPENITPPAGMDNRYCSLTFDVARIRIG 143
           +   V++R  +       +                      G+ +         +     
Sbjct: 68  RRNPVMKRAQQTRRAFIWSGTPQTGTPLEEDQTFYETAAQFGIRSGITIPIAISSGAISV 127

Query: 144 LMLLFPKGRIILRDRLWEIGL--LAAYQANMF--KSYDVHWGKDFELTGREVECLTWISE 199
           L  + PK  +  +D +  I                       + F L+ +E     W+S 
Sbjct: 128 LSFVSPKSILTAQDEIDPIAASSAVGQLHARIGQLKVTPSIQESFYLSPKEGTYTRWLSL 187

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           GKT ++ A I  +  NTV   +A   R+      +  +A A+R  ++
Sbjct: 188 GKTVEDTADIEQVKYNTVRIALAEARRRYDLCNNTQLVALAIRRGLI 234


>gi|260597411|ref|YP_003209982.1| DNA-binding transcriptional regulator CsgD [Cronobacter turicensis
           z3032]
 gi|260216588|emb|CBA29849.1| Probable csgAB operon transcriptional regulatory protein
           [Cronobacter turicensis z3032]
          Length = 215

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             LA+Y       Y         LT RE E L  +  G ++ EIA  L IS NTV  ++ 
Sbjct: 132 QRLASYLITRSGFYHFLNCDAVLLTHREKEILNKLRFGASNMEIARSLFISENTVKTHLY 191

Query: 223 SIMRKTATKTRSGAIAYA 240
           ++ +K A K R+ A+ +A
Sbjct: 192 NLFKKLAVKNRTQAVTWA 209


>gi|163745597|ref|ZP_02152957.1| DNA-binding response regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161382415|gb|EDQ06824.1| DNA-binding response regulator, LuxR family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 206

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 35/225 (15%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVR-----------WDLFQEQKLDSIVSSDWP 83
           R++  D        +    +  G++                    +    LD  +     
Sbjct: 4   RILIADDHDMVRETIAMFLDADGSTVTEAASDLAGALDKIKTEPPYDLVLLDYTMPGMKG 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              ++   +   ++   V                            +   T     +   
Sbjct: 64  LQGLQ--TVLGINEGRPVGLISGTAT------RLIAEQALDMGAIGFLPKTLPAKSLVNA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--LTGREVECLTWISEGK 201
           +  +                       +     D     DFE  L+ RE + L  +   +
Sbjct: 116 VRFMAAGETYAP--------------VSFMSGKDNPEETDFEKALSERERQVLRGLMIAQ 161

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ EIA  L +   T+  ++ ++ RK   K R+ A   A     V
Sbjct: 162 SNKEIARDLDLQEVTIKLHVKTLCRKLDAKNRTDAAIIARDAGFV 206


>gi|332524707|ref|ZP_08400906.1| two component transcriptional regulator luxr family protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332108015|gb|EGJ09239.1| two component transcriptional regulator luxr family protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 215

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 65/235 (27%), Gaps = 32/235 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  +++     ++ L     LL+                                D  
Sbjct: 12  VYLVDDEDVVRDALAWLLRSRRLLSEGFASAEAFEAFRAGCRA-----------PWPDAP 60

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +       L   +A     +   V+      F      +P  +         
Sbjct: 61  SCLLLDVRMPGQSGLALFEQLADGGLTETLPVI------FLTGHGDVPTAVAAVKRGAFD 114

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    F    +                DR+ +  L++A      ++ +       +LT R
Sbjct: 115 FVEKPFSNNTLV---------------DRVEQALLVSAEALGRRRAAEAVQRSLADLTER 159

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E +  + EG+ +  IA  L IS  TV  + A +  K   K+          + 
Sbjct: 160 EREVMRLVVEGRPNKGIADQLAISVRTVEVHRARVFEKMNVKSAIELANLLRESG 214


>gi|313111208|ref|ZP_07797029.1| putative wo-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310883531|gb|EFQ42125.1| putative wo-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      V+ D+     +D  +      +L R +           L +   LF  +   L
Sbjct: 35  GEEALQAVQRDIPSLVIVDLGLPGISGLELTRRLRQR--------LPQLRVLFFSLHDEL 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y +       +   +  +      + +     +              
Sbjct: 87  ALVRQALDAGARGYVTKRAAPTVLLEAIRRVLAGQLYLEQPLATRLA--------CQSWE 138

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        LT RE E    ++ G    E+A  LG+S  TV+N+++ + +K    T++  
Sbjct: 139 EQGGAALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAEL 198

Query: 237 IAYAVRNNIV 246
           +  A+ + ++
Sbjct: 199 VHRAIDSGVL 208


>gi|308186093|ref|YP_003930224.1| Fimbriae Z protein [Pantoea vagans C9-1]
 gi|308056603|gb|ADO08775.1| Fimbriae Z protein [Pantoea vagans C9-1]
          Length = 193

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 64/228 (28%), Gaps = 45/228 (19%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +       +    ++S +  +++      +    +                    
Sbjct: 4   LLLIDDHPLVEVALEAALSQSPIPVKLLSASSEKAARPLLEE----------------QP 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      + +R + +        VL    +                A     
Sbjct: 48  DIIVLDIGLPDSDGLEFLRRLKIHR--PDCPVLIYSAQQT------RHYMRRAQALGAAG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +  + ++   ++ +                              +    +  LT +
Sbjct: 100 YVVKSQRMTQLLSAILAVLGGQTAFPE---------------------MDDEPELPLTQK 138

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E + L  ++ G ++ +IA  L IS  TV+ +  +IM KT  ++     
Sbjct: 139 ERQILALLASGLSNLQIAAQLHISNKTVSTHKKNIMEKTGARSVVELA 186


>gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 198

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 2/148 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V+   T+            +             + D        +    +G +       
Sbjct: 50  VVLIGTQRALTSGIEATRRLLAVHPSAVVIVFGSPDDTASIAAAIACGARGFLRWDATQP 109

Query: 161 EI--GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           EI   L          +       +  LT RE++ L  +S+G+++ EI   L +S +TV 
Sbjct: 110 EIVAALADTLTTPRLPALRDTPDGEAPLTEREMQVLRGMSQGQSNGEIGRELFLSEDTVK 169

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   + RK   + R+ A+A   R   V
Sbjct: 170 THARRLFRKLGARDRAQAVALGFRRGFV 197


>gi|188990243|ref|YP_001902253.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732003|emb|CAP50191.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv.
           campestris]
          Length = 281

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++   A ++      + +  + +             
Sbjct: 70  MADLTILVADDHPLFRAAVIHVLHQTLPTAEVVEASSATTLSAMLRS------------- 116

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 117 -HPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 167

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 168 FGAAGFIPKSTPAESIGTAVASVLDGGTWFPP-----------MTAERSEADAQLAAKLA 216

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 217 QLTPQQFRVLLCLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 271


>gi|186477620|ref|YP_001859090.1| two component LuxR family transcriptional regulator [Burkholderia
           phymatum STM815]
 gi|184194079|gb|ACC72044.1| two component transcriptional regulator, LuxR family [Burkholderia
           phymatum STM815]
          Length = 235

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 62/243 (25%), Gaps = 30/243 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
              + +V+  +             +   +  +     +      +               
Sbjct: 2   QDPIRVVVADDHPVILFGAEQALLKFQGIRVVARARQSTELVKILQTT------------ 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPP 123
                     D  +      D +  +    ++     ++         +           
Sbjct: 50  ---PCDVLVTDLAMPGGQYGDGLPLIGYLRRNFPDLPIV------VLTMLENAALLKRLS 100

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                   + + D++ I + +  +      +       +        +  +        +
Sbjct: 101 ELGVISVVNKSDDLSHIGLAVQHVSRHIEYMSPSVKSAL--------DTLRMNTGGKNDE 152

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +     G T  EI+  L  S  T++    + MRK   +  S    YA  N
Sbjct: 153 VILSKRELEVVRLFVSGMTIKEISEQLNRSIKTISTQKNTAMRKLGLERDSELFQYAQSN 212

Query: 244 NIV 246
            ++
Sbjct: 213 GLM 215


>gi|78100993|pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
           Pseudomonas Fluorescens
 gi|78101079|pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
 gi|59580654|gb|AAC06272.2| response regulatory protein [Pseudomonas fluorescens]
          Length = 208

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 24/206 (11%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD----SIVSSDWPFDLVRCMALSE 94
           +D  +S    +  L    G           F E +       +V       +       +
Sbjct: 10  VDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQ 69

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
                + +      F      +P  +         +    F+   +   +          
Sbjct: 70  LTAISDGIPIV---FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAI---------- 116

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGIS 213
                 E GL    +    +       + F  LTGRE + L     G  + +IA  LGI+
Sbjct: 117 ------EQGLQLNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIA 170

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAY 239
             TV  +  +IM+K   ++ +  +  
Sbjct: 171 EVTVKVHRHNIMQKLNVRSLANLVHL 196


>gi|262273261|ref|ZP_06051076.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
 gi|262222634|gb|EEY73944.1| transcriptional regulator LuxR family [Grimontia hollisae CIP
           101886]
          Length = 212

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 32/233 (13%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  IV+  +     + +      +   A ++  D   S T  +                 
Sbjct: 4   QYTIVIADDHPLFRNALFQSVHMAISGANLLEADSLDSLTALLEK--------------E 49

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +        +  + L  +     ++                     A  
Sbjct: 50  PDIDLLLLDLKMPGANGMSGL--IHLRVQYPELPIV------VISANEETCVIRQVKANG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   + D+  +   L  +                       +     +    K   L
Sbjct: 102 AIGFIPKSSDMRELINSLNHVLEGDTCFPPGID----------LSDNGDEESLMDKISSL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T ++ + L  +++G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 152 TPQQYKVLNMLNDGLLNKQIAYELDVSEATIKAHMTAIFRKLGVKNRTQAVIL 204


>gi|311745494|ref|ZP_07719279.1| DNA-binding response regulator [Algoriphagus sp. PR1]
 gi|126578047|gb|EAZ82267.1| DNA-binding response regulator [Algoriphagus sp. PR1]
          Length = 209

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 63/226 (27%), Gaps = 36/226 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  IV+  +       +       +    +  L  +      +  + +          
Sbjct: 1   MSKTTIVIADDHPLLLKGLKDFLLEQE----IDVLATSTDGQDALNQIIK---------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                Q   LD  + +    ++                     L   ++     N     
Sbjct: 47  --HKPQLAILDLEMPNMTGLEIASECKKRAL----PTKIILLTLHKEMY---LYNQAKEL 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
            + + Y    F +  +   +  +                          +  D    +  
Sbjct: 98  NL-SGYILKEFALGEVSQAIDSILAGKTFFSETIFKN------------QESDTLKTESS 144

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            LT  E + L  I++G+++ +IA  L IS  TV+ + ++++ K   
Sbjct: 145 PLTPSEKKILRLIAQGESTKQIAEKLFISERTVDKHRSNMISKLNL 190


>gi|325972574|ref|YP_004248765.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027812|gb|ADY14571.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy]
          Length = 305

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + RE E ++ + EG ++ EIA  L IS NTV  +I +I  K     R   
Sbjct: 250 SDREAEIVSLLVEGLSNQEIAKKLFISPNTVKTHIKNIYAKLEVNNRLQL 299


>gi|117921896|ref|YP_871088.1| two component LuxR family transcriptional regulator [Shewanella sp.
           ANA-3]
 gi|117614228|gb|ABK49682.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. ANA-3]
          Length = 223

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 66/232 (28%), Gaps = 28/232 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ + +  +     + ++    ++   A ++  +        +               
Sbjct: 1   MSQIKVAIADDHPLFRTALTQAVLKNVNTAEVLEAENFQELITLVE-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +  +  F  +  +           +                      
Sbjct: 47  NNPDIELIFLDLHMPGNEGFTGLTLLQNHF-----PDIAVIMVSSD---DQPEIIRKAIN 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   +  + +I   +  +      +       +    A +            +  
Sbjct: 99  FGASAFIPKSASLTQISTAIATVLEGEVWLPEHTDINVDQQTAAEHQRLAK------QLA 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT ++   L  I+ G+ + +IA  L I   TV  ++++I+ K     R+ A
Sbjct: 153 QLTPQQYTVLASIANGRLNKQIAYDLDIKETTVKKHVSAILVKLEVYNRTQA 204


>gi|127513542|ref|YP_001094739.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126638837|gb|ABO24480.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 222

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             +     +   +  V ++   +  +    +                +     + D    
Sbjct: 97  AMSFGAAGFIPKSSPVEQMVKAINAVMAGRQWTPP----------GCEDLSAVTLDSMSS 146

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K   L+ R+ + L   ++G  + +IA  LG+S  T+  + ++I  K    TR+ A+ 
Sbjct: 147 KIASLSPRQHKILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAVI 203


>gi|109898298|ref|YP_661553.1| two component LuxR family transcriptional regulator
           [Pseudoalteromonas atlantica T6c]
 gi|109700579|gb|ABG40499.1| two component transcriptional regulator, LuxR family
           [Pseudoalteromonas atlantica T6c]
          Length = 213

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 57/175 (32%), Gaps = 14/175 (8%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
           LL      +   LD  +  +     +  +                        +      
Sbjct: 42  LLKLHSDVELIFLDLNMPGNDGLTGLTMIRSH--------FPDVLVAIVSGDESPSMIRK 93

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   Y   +  +  I   +  L    + +  + + ++  +               G
Sbjct: 94  AMDFGACGYIPKSTPLPVIADAVRELLEGEQWLPNELVEQVQKI------EDSQEQAFAG 147

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           K  +LT  +++ L  +++G  + +IA  LG+S +T+  ++++++ K     R+ A
Sbjct: 148 KLAQLTPHQLKVLQLMADGLLNKQIAYELGVSESTIKQHVSAVLHKLGFNNRTQA 202


>gi|328883875|emb|CCA57114.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 204

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 64/240 (26%), Gaps = 39/240 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V ++L  ++      ++ L    D L  +                    G     + R 
Sbjct: 4   PVRVLLADDEHLIRGALAALLRLEDDLVVVAEAAT---------------GPEALAMARA 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +       +   +           L     +               +  
Sbjct: 49  HRPDVAVLDLQMPGADGVRVATALRDE--------LPDCRTMIVTGHGRPGHLKRALSAG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   T    R+   ++ +    R +  +                   D     D  L
Sbjct: 101 VRGFVPKTVSAQRLAEIILTVHAGNRYVDPELAA----------------DAIAAGDSPL 144

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E L + ++G    EIA    +S  TV NY++S   K   + R  A+  A     V
Sbjct: 145 TAREAEVLEFSADGAPVAEIARRASLSPGTVRNYLSSAAAKLGAENRHAAVRLAQAKGWV 204


>gi|320324215|gb|EFW80294.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 190

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 17  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +                 LA       ++ 
Sbjct: 69  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQA------LACAVREDGQTN 122

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    
Sbjct: 123 ELELFKLVN--DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVEL 180

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 181 IEMAKRNALV 190


>gi|213618655|ref|ZP_03372481.1| transcriptional regulator NarL [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 188

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 59/208 (28%), Gaps = 21/208 (10%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           +N ++      +   P     + +++ +   +S            G     L        
Sbjct: 1   MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASN-----GEQGIDLAESLDPDL 55

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
             LD  +      + +  +          V          V +   + +T      + Y 
Sbjct: 56  ILLDLNMPGMNGLETLDKLREKALSGRIVVF--------SVSNHEEDVVTALKRGADGYL 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD-FELTGRE 190
               +   +   L        ++       +           ++      +D  +LT RE
Sbjct: 108 LKDIEPEDLLKALQQAAAGEMVLSEALTPVLA-------ASLRANRATTDRDVTQLTPRE 160

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVN 218
            + L  I++G  +  IA  L I+ +TV 
Sbjct: 161 RDILKLIAQGLPNKMIARRLDITESTVK 188


>gi|159184332|ref|NP_353512.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139648|gb|AAK86297.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 216

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +       +       D    +I                    A+     
Sbjct: 1   MSELVIIIADDHPLFRGALKQAVAGLDGQQTIIEAGD--------------FEAARHAAT 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD  +     F  +  +          ++                      
Sbjct: 47  TRNDADLMLLDLAMPGVSGFSGLMALRAE--FSSLPIVIVSAT------DDATTVRRSIE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR G+  +      I      E                   G+  
Sbjct: 99  LGASGFISKSSGIDDIRDGIRAVLEGDVWIPSGHQGE--------KEQDPDVADLIGRLR 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   L  ++EG  + +IA  L +S  T+  ++++I+ K    +R+ A+ 
Sbjct: 151 TLTPQQSRVLGMLAEGLLNKQIAYELNVSEATIKAHVSAILLKLKVDSRTQAVI 204


>gi|19553957|ref|NP_601959.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391600|ref|YP_227002.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325536|dbj|BAC00158.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326942|emb|CAF20786.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 206

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 66/215 (30%), Gaps = 19/215 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D    +  L+   S    +  +     G     ++   +      D  +     
Sbjct: 6   QVLIVDDEPFFINALETYFSTNENINVVATAENGVQALDILSKTIVDVVLCDVRMPLLSG 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L++ +A  +             L    F      ++        +   + D   I   
Sbjct: 66  VELMKILAEKKLT--------CRVLALTSFLDDYAMLSMLQFGAFGFLLKSADRDEIIEA 117

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +      G  I  +    +    +   +             +L  RE + LT +  GK++
Sbjct: 118 VQSAAMGGTTISPEIATNLRKFLSQPPSSIS----------DLPTRERDVLTLLHLGKSN 167

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +IA  L +S  +V   ++ +M++    +R   +A
Sbjct: 168 ADIAAELKLSTVSVKKSVSRLMQRFQVSSRLELVA 202


>gi|320450456|ref|YP_004202552.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
 gi|320150625|gb|ADW22003.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
          Length = 206

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 57/222 (25%), Gaps = 32/222 (14%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D     + L   +     +       G            +   LD  +      
Sbjct: 14  RVLIADDHPLFRLGLRAGLEGEGLVVVAEAQDGKEALEKTLALNPEAVLLDLRMPVLDGL 73

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +  R +                      +              + Y S       ++  L
Sbjct: 74  ECTRMLRKKGYS--------GLVALLTTYQEPALVREAFLAGADAYFSKELSAPELKRRL 125

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +      +                               LT RE E L  +++G +  
Sbjct: 126 LRVAQGEEKLKP------------------------PDLPSLTSREEEVLRLLAQGLSVK 161

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  LG+S +TV +++ S+  K   + R  A+  A     +
Sbjct: 162 EMAKALGLSPDTVKDHLESLYGKLLARNRVEALEKARSLGFL 203


>gi|291456915|ref|ZP_06596305.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
 gi|291382192|gb|EFE89710.1| two-component system response regulator [Bifidobacterium breve DSM
           20213]
          Length = 227

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 17/238 (7%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++  + +      S +  +   L   +           + AL          L    
Sbjct: 2   INVMIVDDQQPTRMGFSLMVMKDPALRMTLQAGNGQDALDILAAL---------QLHGQS 52

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +D  +      D    +        Y  ++         +          +   
Sbjct: 53  LPDVILMDVRMPVMDGLDATARIKQL-----YPSIRIL---ILTTYDQDSYAFGGLSVGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +         +   +  ++    I+      E+        ++         K   L 
Sbjct: 105 SGFLLKDVKTKDLCRAIHSVYDGDAILTPRITKEVIRRGVPNVSINADTLAIRSKFDSLG 164

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E    +SEG T+ EIA  LG+    V   ++  + K   K R G      +  +
Sbjct: 165 PREFEVSALVSEGMTNAEIAQRLGMQLEAVKKAVSRSLAKLDVKERVGIAVLWYKAGM 222


>gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 75

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L +S  TV N+I+++M+K   K RS A+   VR  
Sbjct: 13  LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVRLG 71


>gi|28868117|ref|NP_790736.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213970211|ref|ZP_03398342.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301385917|ref|ZP_07234335.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059557|ref|ZP_07251098.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130881|ref|ZP_07256871.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28851354|gb|AAO54431.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213925092|gb|EEB58656.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|331018801|gb|EGH98857.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 207

 Score = 88.4 bits (218), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 28/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R       P   + + R I      +   +   L E +     L    D      LD   
Sbjct: 4   RIIVADDHPLFREGMLRTIERLLPEAVIEQAGNLNEVL----MLARSGDEVDTLILDLRF 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                   +  +            +R + +   +           +   + +     D  
Sbjct: 60  PGLNSMQTIAELRNE--------FRRTSIIVVSMVDDPETIAQVMSNGADGFIGKNIDPQ 111

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   ++ +     ++             Y++      +        LT R+ + L  ++
Sbjct: 112 EITESIVAIRQGEVVV------------KYKSEGSIFNESAVNALSPLTTRQKQVLGLVA 159

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA----YAVR 242
            GKT+ EIA  LGIS  TV  +++S+++     TRS A A     A+R
Sbjct: 160 AGKTNKEIAKELGISPFTVRIHVSSLLKVLGVSTRSAAAAQFSSLAIR 207


>gi|256785392|ref|ZP_05523823.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769288|ref|ZP_06528666.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289699487|gb|EFD66916.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 204

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +       ++ L    + +  +  +           A                
Sbjct: 5   IKVLLAEDQAMVREALAALLGLEEDIEVVAQVARGDEVLDAARA---------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +            A +   +    ++         F       +      
Sbjct: 49  ----HGVDVALLDIEMPGATGIEAAALVHRELPAVKLV---VLTTFGRPGYLRSAMESGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + +       A++   +  +    R+I                               LT
Sbjct: 102 DAFLVKDAPAAQLAEAVRRVLAGERVIDPTLAAA----------------ALAEGANPLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G T+ E+A  L +S+ TV NY+++ ++K A + R+ A+  A     +
Sbjct: 146 DREREILRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARNKGWL 204


>gi|71908813|ref|YP_286400.1| LuxR family transcriptional regulator [Dechloromonas aromatica RCB]
 gi|71848434|gb|AAZ47930.1| transcriptional regulator, LuxR family [Dechloromonas aromatica
           RCB]
          Length = 205

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 6/180 (3%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ---RPTELFCPVFHTLPEN 119
           L  +   +  + + +         +        +   +VL+     T     +    P+ 
Sbjct: 17  LAAFPQARTMRREDVFGFPAGESAILWYRCRSSESVASVLRFPCLETGQRVVLLADEPDE 76

Query: 120 ---ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                  A   +  C+       +R   +++   G  + +  L  +   A+         
Sbjct: 77  SVVEEALALGASGCCNTNAAPEVLRQVALVVENGGLWVGQSLLLRLVGGASRALATKSER 136

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ REV+    ++ G ++ E+A  L I+  TV  ++++I  K   + R   
Sbjct: 137 PPRVDWAMLLSEREVQVARLVAGGASNREVAEQLSITERTVKAHMSAIFEKLGLRDRLQL 196


>gi|315642413|ref|ZP_07896990.1| LuxR family DNA-binding response regulator [Enterococcus italicus
           DSM 15952]
 gi|315482290|gb|EFU72845.1| LuxR family DNA-binding response regulator [Enterococcus italicus
           DSM 15952]
          Length = 202

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 68/225 (30%), Gaps = 29/225 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                   +  L  ++ L+            +   G      +R    +   LD  +   
Sbjct: 6   LAEDQIMLNTTLTTILNLEDDFDVI-----ASTADGKEALEKIRKLQPEVVILDIEMPQL 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              ++ + +  +              +    F              + Y         + 
Sbjct: 61  TGLEVAKEIRSAGLPI--------KIIILTTFARECYFQEAVEYNVDAYLLKDSPSDYLV 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R+   + +                  V   +   LT RE+  L  +  G 
Sbjct: 113 ASIHQILTGNRVFSPELV----------------TSVLRAEKNPLTKREMSVLAGLQTGA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ ++A  L +S  T+ NYI+SI+ KT T +R  AI  A +N  +
Sbjct: 157 STAKMAEELFLSEGTLRNYISSILSKTGTHSRIEAINIAKKNGWI 201


>gi|269148498|gb|ACZ28637.1| two component transcriptional regulator LuxR family [uncultured
           organism]
          Length = 203

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 26/223 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTM-RMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            S    +    D  A    L+     T   + +                      LD  +
Sbjct: 1   MSTQPTVFVVDDDAAVRDSLEMLFDSTGMSVESFASASRF--IDYYDPARPGCLVLDIRM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L + +   +             +F      +  ++         +    F+  
Sbjct: 59  PDMDGMELQQVLKEKQVS--------LPIIFITGHGEVSLSVKALKEGAYDFIEKPFEDE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +                +  +L A    + +       +   LT RE E +  I+
Sbjct: 111 VLLESIH---------------DAIVLDAKNRQLAEREADIRRRCERLTPREKEVMQHIA 155

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +GK++ EIA +L +S  TV  + A +M K   K+ +  +  A+
Sbjct: 156 DGKSNKEIAALLELSHRTVEVHRARLMEKMEVKSLAELVPMAL 198


>gi|71901159|ref|ZP_00683264.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
 gi|71729081|gb|EAO31207.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
          Length = 210

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +     + V  +   +   A+++      +    + A             
Sbjct: 1   MSEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 49  --PQTELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                      ++      K  
Sbjct: 99  FGAAGFIPKSSPPETITEVVAAVLDGGTWFPP-----------MLVECSEADTQLAVKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 RLTPQQFRVLLCLADGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAAVL 202


>gi|271963218|ref|YP_003337414.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506393|gb|ACZ84671.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 197

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 61/229 (26%), Gaps = 33/229 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             +A ++ L+  +    ++       G      VR        LD  
Sbjct: 2   IRVLLADDEHLIRGAIATLLGLEPDIEVVAQVAR-----GDLVAQAVRDHRPDVIVLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       +               L     L    F          A     +       
Sbjct: 57  MPGMDGLTVAE------------TLPGHAVLMLSSFGRPGYLRRALAAGVRGFIPKDASA 104

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +   GR +  +      +                  +  LT RE + L   
Sbjct: 105 DELATAIRKVSSGGRYLDPEMAASAMMAG----------------ESPLTERERDALALA 148

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S G +  EIAV L ++  TV NY++S + K     R  AI  A     +
Sbjct: 149 SRGASVGEIAVSLHLTEGTVRNYLSSAITKLGASNRITAIHAAQEKGWL 197


>gi|124266085|ref|YP_001020089.1| ATP-dependent transcriptional regulator-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258860|gb|ABM93854.1| ATP-dependent transcriptional regulator-like protein protein
           [Methylibium petroleiphilum PM1]
          Length = 896

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 15/248 (6%)

Query: 10  IVLNREDEQRTSFVS-HLPTRSDLLARMIPLDCTV--SWTMRMYAL-TEYVGASHFLLVR 65
           + L   +  R + ++  L   + L  R+ P+   +   W      +  E  G     +  
Sbjct: 652 VSLADWERVRRAVLAGELDRATALAKRIAPVCPPLNPQWIYMADDMEGEAFGRIRLAIAH 711

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D         +++ +      R         +  ++            +L + +     
Sbjct: 712 HDH---ALASQLIARERARQTGRVYRDIRLYVFEALMLHDKGSPNGAHRSLRKALQLARP 768

Query: 126 MD-------NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                         ++      +  L            DR +   LLAA   ++ +    
Sbjct: 769 GRYVRCFLDEGRAIVSMLREEYQHFLQSAADGQAPADPDRDFIELLLAASGTDLGQPRGR 828

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H   D  L+ RE E L +++ G  + EIA  L +S NTV  ++ +I  K     R  AI 
Sbjct: 829 HHLTD-PLSEREKEMLQFLANGVANKEIASRLFVSENTVKFHLKNIYSKLGVSGRVQAIN 887

Query: 239 YAVRNNIV 246
            A    +V
Sbjct: 888 AARTLRLV 895


>gi|227819625|ref|YP_002823596.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227338624|gb|ACP22843.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 266

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                  L + ++        Y   T  +      + L    G  +    +  +G   A 
Sbjct: 120 VLSDIDELEQVLSALESGARGYVPSTIGLEVCVKAISLALAGGTFVPASSV--LGRTVAG 177

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                             T R+ E +  +  GK +  IA  L +  +TV  +I +IM+K 
Sbjct: 178 AGEELARPGAGM-----FTHRQEEVIQELRRGKANKIIAYDLNLHESTVKVHIRNIMKKL 232

Query: 229 ATKTRSGAIAYAVRN 243
               R+     A + 
Sbjct: 233 GATNRTEVAYKASQM 247


>gi|153807354|ref|ZP_01960022.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
 gi|149129716|gb|EDM20928.1| hypothetical protein BACCAC_01632 [Bacteroides caccae ATCC 43185]
          Length = 200

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 34/80 (42%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y                 L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 116 GYPVKDMPPMIPAEHPQVLLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 175

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 176 KLGIKSVSGLTIYAVMNGYI 195


>gi|307308093|ref|ZP_07587808.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306901296|gb|EFN31901.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 229

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 17/238 (7%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  + ++    +    +   P   D LA  +             +L+E +        
Sbjct: 1   MPRTAVPVHSLSIKSALVIDDHPLYCDALAATMESTFNTRRIRTATSLSEALQQLRMRF- 59

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +           +     D    V+          F +     +  A
Sbjct: 60  ---SPDLIMLDLNLPDASGLSGFLKIKEKMPDI--PVI------VISAFTSKDVVQSVIA 108

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +     D    +  +  ++     +          + A      +S +    K  
Sbjct: 109 AGAAGFIPKDIDRHNFQEAMQDIWNGKTYVPPGYA-----VPARATATDQSVETISRKIA 163

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            L+ ++   L+ I EG  +  IA  + ++  TV  +I +++R+     R+ A      
Sbjct: 164 HLSQQQTRILSLICEGMPNKLIAYEMQLAEATVKAHITALLRRLGVHNRTQAAMLVRE 221


>gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus
           marinus str. MIT 9303]
          Length = 92

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 41/72 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +  +       L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MATGKIPSSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ + 
Sbjct: 61  RVALLNWAMDHG 72


>gi|75908471|ref|YP_322767.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75702196|gb|ABA21872.1| Transcriptional Regulator with GAF sensor, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 224

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 74/229 (32%), Gaps = 24/229 (10%)

Query: 30  SDLLARMIPLDCTVSWT-MRMYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWP 83
            D+   +  +          M  + EY G  H+ +   D       + Q + ++     P
Sbjct: 6   HDVFHAIANIRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKPDTETQSIPAVCLESNP 65

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              V    +          ++   +  P             G  +          R+   
Sbjct: 66  ---VGRYVVERH---APAHEQL--ILTPEDWKDF-CPRHDHG--HVMTGPIICDGRLIGT 114

Query: 144 LMLLFP-KGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWI 197
           L             + L ++  L  + +    +   +           LT RE++    +
Sbjct: 115 LNFARDKGKPAFTANDLADLSALCIHLSAKLATLRTNPNIFKSSTTNPLTPRELQIAELV 174

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T+ EIA  L I++N+V   +  + RK     R+  +A  +++ ++
Sbjct: 175 AQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVAR-LQDQLI 222


>gi|37524129|ref|NP_927473.1| hypothetical protein plu0103 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783552|emb|CAE12398.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 208

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 68/228 (29%), Gaps = 36/228 (15%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I L  +DE     +S L         +  ++  VS         + + + +  +++    
Sbjct: 5   IYLIDDDEAIRDSLSML---------LETMNWQVSSFPGAQEFLDRIDSENIAVLQ---- 51

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +       L     L + +    V+             +             
Sbjct: 52  GCILLDIRMPGKPGLALQA--DLLKLNSTLPVI------IMTGHGNIDICRRAFKNGAFE 103

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +   D   +   +                   L         + Y+    K  +L+ R
Sbjct: 104 FLTKPIDADLLIETVSSA---------------LLFHQKVFRQRQIYEQLKTKFSQLSER 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E E +  I EGKTS +IA  L +S  T+  + A+I  K    +    +
Sbjct: 149 EREVMKIILEGKTSKQIAQQLSLSPRTIEVHRANIFHKLDIHSLPQLV 196


>gi|313203941|ref|YP_004042598.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312443257|gb|ADQ79613.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 201

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D    +   L+ RE E +  + +G T+ EIA  L +S +TV ++  +I RK    + +G
Sbjct: 123 TDQALDEQNTLSAREKEIIICVVKGLTNKEIAQTLFLSTHTVISHRRNITRKLEIHSTAG 182

Query: 236 AIAYAVRNNIV 246
              YA+ N ++
Sbjct: 183 LTVYAIMNKLI 193


>gi|212690554|ref|ZP_03298682.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855]
 gi|212666903|gb|EEB27475.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855]
          Length = 231

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 160 WEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             +  +    A   +  +     +   LT  E E L  ++ GKT+ EIA    +S  TV 
Sbjct: 137 QRLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVM 196

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I RK        A  YA+R  IV
Sbjct: 197 THRKNIFRKLEVNNVYEATKYALRAGIV 224


>gi|326388234|ref|ZP_08209837.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207400|gb|EGD58214.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 194

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 11/189 (5%)

Query: 56  VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115
           + A         L    ++D ++      D+ R   L+     +  +             
Sbjct: 15  LEAGALSEAIEALEAAGEVDMVLLDLNIPDVSRFSGLNRLRDSFPSIPVVMVSG---ALD 71

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                   A     +   +   A I   L  +      I          +        + 
Sbjct: 72  RITVREALAAGAAGFIPKSLKRAEIVEALRQVLEGEIYIPN--------ILEEDNEDARE 123

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +   LT ++   L  +  GK + +IA  L +S  TV  ++++I++K    +R+ 
Sbjct: 124 RASILARIEALTPQQKVVLRHLVNGKLNKQIAFELDVSMTTVKAHVSAILQKLNAYSRTQ 183

Query: 236 AIAYAVRNN 244
           A+  A R  
Sbjct: 184 AVILANRVG 192


>gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family
           [Rhodobacter capsulatus SB 1003]
          Length = 261

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ-----KLDSIVSSDWPFDLVR 88
                         R + +    GAS  +       +E          ++  +    ++ 
Sbjct: 15  PEAAGASGLGREVDRFFEIARGFGASALIYDYTPRHRETDGTVTAPAVMMVRNLDPGMID 74

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENIT------------------PPAGMDNRY 130
                       V         P   +                          +G  N  
Sbjct: 75  YWCGRGYAHVDPVQAVAVNSVAPFVWSYDAEAGDLSASFLTRNSRPVVEFISASGFVNGI 134

Query: 131 CSLTFDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMF-------KSYDVH 179
                      + +  L+         +    L    L+A    N          +    
Sbjct: 135 TVPIHLPGGGYVTVNGLWNGPGRAFAAVAAQVLPGFALMAQAFQNDIGAPAPADPAPPQP 194

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +   L+ RE ECL   ++G+++ E + ++  S  TV  ++ + +RK   + RS A+A 
Sbjct: 195 QPRTPALSARERECLDHAAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAE 254

Query: 240 AVRNNIV 246
           AVR  ++
Sbjct: 255 AVRRGLI 261


>gi|291286070|ref|YP_003502886.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883230|gb|ADD66930.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 193

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            E +         Y +     A   + +  L      +  + +  +        N     
Sbjct: 74  EEAVQLMRFGVRGYGNRLMLPANFVMAVNALSSGQVWMPPEIINRLINAIPENVN----- 128

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G    L+ RE+E   ++++G+++ EIA  + I+  TV  ++ SI  KT  + R   
Sbjct: 129 SNGAGDMSMLSEREMEVARYVAQGQSNIEIADNMDITVRTVKAHLTSIFNKTGLRDR--- 185

Query: 237 IAYAVRN 243
           +A A+R 
Sbjct: 186 VALALRL 192


>gi|124265671|ref|YP_001019675.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124258446|gb|ABM93440.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 215

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 64/223 (28%), Gaps = 18/223 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           H+    D           +     M  +      A     +R        +D  +  D  
Sbjct: 8   HVLLLDDHAVVRAGYRQLIDAEPDMCVVAACATSAQACEQLRLQQIDVAVVDLSLKDDSG 67

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              ++ +           L     L   +       +         Y +   D   +   
Sbjct: 68  LQAIQRLRAR--------LASLRILVFTMHAQQSYALQALRAGALGYLTKDSDPQAMLDA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R+   + +    +L   +           G   +LT RE + L   ++G  +
Sbjct: 120 VRQVAQGRRVFSSELVE--AMLDPLEVERG-------GPLRQLTPREFDVLRLAAQGLAT 170

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA  + +   TV NY++ I +K         +  A +N +V
Sbjct: 171 RAIAEAMHLGDKTVLNYMSLIRQKLGAANDLQLLRLAAQNGLV 213


>gi|89902166|ref|YP_524637.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89346903|gb|ABD71106.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 328

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 69/225 (30%), Gaps = 24/225 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LARM           +  +  +  G +   +   D         +  
Sbjct: 117 VDYVTKPIKPKEVLARMQVHLQGAREKRQARSALDAFGYASITVRVSDG------KLMWQ 170

Query: 80  SDWPFDLV-RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
           +    +L+ R            V Q                         R         
Sbjct: 171 TPLARELLLRYYGTEAPKTPEPVCQWLRRHVNDAVALTEPPRLSIELGPKRLTFRLH--- 227

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
             +IG         II+++   E  + A                 F+LT RE E L W+ 
Sbjct: 228 -QQIGDSEGGGDWLIIMQEVSDESVIEAIAL-------------SFKLTPREAEVLYWVV 273

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +GK + +I  ILG S  TV  ++  +  K   +TR+ A   A+  
Sbjct: 274 KGKINRDIGDILGSSPMTVKKHLEHVFAKLGVETRTAAAGMAMSR 318


>gi|75675221|ref|YP_317642.1| response regulator FixJ [Nitrobacter winogradskyi Nb-255]
 gi|74420091|gb|ABA04290.1| two component transcriptional regulator, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 205

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 50/178 (28%), Gaps = 23/178 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F     D  +      DL+R +                 +       +P  +        
Sbjct: 49  FGCVVSDVRMPGIDGMDLLRRLKAHASP--------LPVIIMTGHGDIPLAVEAMKLGAI 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    F+  R+   +     +G                              +   L+ 
Sbjct: 101 DFVEKPFEDERLIGMIEAALEQGPDQT---------------KGDSISAEIVSRIATLSQ 145

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE + +  +  G ++  IA    IS  T+  Y A++M K      S  I  A+R  I+
Sbjct: 146 RERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKMQAHNLSELIRLALRAGIL 203


>gi|260461192|ref|ZP_05809441.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
 gi|259033226|gb|EEW34488.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 254

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 14/220 (6%)

Query: 21  SFVSHLPTRSDLLAR-MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           + +       D LAR +  ++       R    +         L          + ++ S
Sbjct: 35  AIIDDRSLMCDCLARGLAEIEPAF----RFQHFSSIETFDAADLEETQRISTVLMCAVWS 90

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +      +  +A  +  +        + +         +           Y   +  +  
Sbjct: 91  NSEADHHLARIAHLKVTR-----PWVSTIILADIENFDDVHKAIDNGACGYVPTSVSLQI 145

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
               + L+   G  I    L++    A               +D   T R++  +  +  
Sbjct: 146 AAKAIHLVAAGGIFIPPSVLFQSAKNARDGHQA---TKSQAQEDNFFTSRQISVIEALRR 202

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GK +  IA  L +  +TV  ++ +IM+K   + R+  +AY
Sbjct: 203 GKANKIIAYELNMCESTVKVHVRNIMKKLRARNRTE-VAY 241


>gi|120555604|ref|YP_959955.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
 gi|120325453|gb|ABM19768.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8]
          Length = 891

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%)

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
            +                        ++ RE   L  I++G ++ EIA  L IS +TV  
Sbjct: 805 GDFTAALGRLFGCEPVAPAADPLAEPISDREQGVLELIAQGLSNQEIADKLHISLHTVKT 864

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +   I  K   K+R+ AI  A    ++
Sbjct: 865 HARRINAKLDVKSRTQAIVRARELGLL 891


>gi|329957447|ref|ZP_08297922.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328522324|gb|EGF49433.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 238

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +    +  +   D +L+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K   
Sbjct: 158 SSMPPHAANGADDHDLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKLGI 217

Query: 231 KTRSGAIAYAVRNNIV 246
           K+ SG   YAV +  +
Sbjct: 218 KSVSGLTIYAVMHGYI 233


>gi|182679882|ref|YP_001834028.1| LuxR family transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635765|gb|ACB96539.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 257

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 63/228 (27%), Gaps = 19/228 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +            +  ++  +G S+F +      Q ++   +    +P D          
Sbjct: 15  LQRAKNFSEIHDCVLLVSCQMGFSYFAITEHFNTQPKRPVPMSIVHYPKDWESLFRRKRL 74

Query: 96  DKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRI 142
                V +         F               +   +    G+ + Y        R   
Sbjct: 75  FGVDPVQRASNNRLRGFFWSEVPRMIPMSRQDHMILELARKNGLGDGYTVPANIPGRYNG 134

Query: 143 GLMLLF--PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK----DFELTGREVECLTW 196
                    +   +    L  +  +      + +S              LT R+++C+  
Sbjct: 135 SCSFGMKVSEEVRLEFKHLPLLDYIGTAAFEIAQSLHHGSAPGELDRPRLTDRQLDCVAL 194

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +++G ++ EI   L I   T   +I    ++     R+     A+ + 
Sbjct: 195 LAQGLSTVEIGHALNIRYETAVQHIKDASQRYGVNRRTPLAVRALLDG 242


>gi|229543112|ref|ZP_04432172.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
 gi|229327532|gb|EEN93207.1| two component transcriptional regulator, LuxR family [Bacillus
           coagulans 36D1]
          Length = 217

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 69/221 (31%), Gaps = 19/221 (8%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD----LFQEQKLDSIVSSDWPFDLV 87
           ++A ++ +D          +L +  G     +   D      +    D  +      ++ 
Sbjct: 1   MMASILVIDDHRLVASGTKSLLQNAGFEAEAIFSADYLKEKIESANYDVFLIDWSFPEVN 60

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--TPPAGMDNRYCSLTFDVARIRIGLM 145
                 +  K      +   +    F +    +         +   S T  V  +   + 
Sbjct: 61  GLEISKKIIKLQP---QAKIIIYTGFDSELAIVLDQLIEEGISGIISKTASVNTLINAVH 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +     I     + E    + Y   + K  +         + RE+E +  + +G T+ E
Sbjct: 118 AVISGYSIFPNTLVKE----SVYTLRLKKETENL------FSEREIEIIECLIDGDTNKE 167

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L I++ +V   + SI +K    +R           I+
Sbjct: 168 IAAKLYITQRSVEYQLRSIYKKLGIHSREQVADRVKEMRII 208


>gi|329767843|ref|ZP_08259358.1| hypothetical protein HMPREF0428_01055 [Gemella haemolysans M341]
 gi|328838762|gb|EGF88359.1| hypothetical protein HMPREF0428_01055 [Gemella haemolysans M341]
          Length = 205

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 85/239 (35%), Gaps = 35/239 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  + +     +  L    + ++ +        +  ++                 +
Sbjct: 1   MKILLIDDHKLIKIGIKVLLEDDEKISVIDDCASKTEFLEKIK---------------DN 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           ++     D  +     +D++  +   + D           +   +               
Sbjct: 46  IYNLFICDISLPDGSGYDILEIIKEKKLD--------AKVIILSMHEDKSYIKKALRLGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y + +     I   +       ++I++D ++     A     +FK       K+ EL+
Sbjct: 98  SGYVTKSTAHEEILQAI------DKVIVKDEIYLNDKYATIFYELFKE-----DKEIELS 146

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E   +I EG T  +I   L +S  TV+ Y   +M KT TK RS  + Y ++NN++
Sbjct: 147 EREKEVGRYIVEGYTLTDIGEKLFLSVKTVDTYKKRLMEKTNTKKRSELVEY-LKNNLI 204


>gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus
           DSM 2522]
          Length = 74

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   VR  
Sbjct: 12  LTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRSQAVIELVRLG 70


>gi|170751099|ref|YP_001757359.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657621|gb|ACB26676.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 196

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 31/220 (14%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVR 88
           + R++ ++        +      +G +              Q    D ++       +  
Sbjct: 1   MPRILCVEDDAETASLLAEALVDLGYTVERASDGEAGLSAIQMSPPDLVLCDVRMPGMNG 60

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L +       L R   +F          I       + Y +   D            
Sbjct: 61  LDLLEQLAAAAPHLARIPFVFLTALDDRDSEIAARRKGADDYLTKPIDFE---------- 110

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTWISEGKTSDEI 206
                          +LA    +  ++      +D    LTGRE E LTW S GKTS EI
Sbjct: 111 ---------------MLAVVVEHRLRAGRGGQSQDAFGHLTGREREVLTWASRGKTSAEI 155

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A+IL +   TVN +    M++     R+ A+A A+   ++
Sbjct: 156 ALILDLRERTVNFHFDQAMKRLNVVNRTHAVARALSLRLI 195


>gi|157960462|ref|YP_001500496.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845462|gb|ABV85961.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC
           700345]
          Length = 224

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 44/140 (31%), Gaps = 1/140 (0%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           ++        V                        +  +  GL  +        R  + +
Sbjct: 71  VKHVPVALYQVEREGLSAEAALLQGIRGLLFNNERMDLLLTGLRKMLSDELWFDRPLMSK 130

Query: 162 -IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            +  L                    LT RE   +  +S G  + EIA  L IS +TV  +
Sbjct: 131 VLRQLVNKMGISESLTSEASESLEGLTNREKTIIQLVSSGARNKEIADKLCISEHTVKAH 190

Query: 221 IASIMRKTATKTRSGAIAYA 240
           I+SI RKT  + R   + +A
Sbjct: 191 ISSIFRKTQARNRVELLRWA 210


>gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain
           and an HTH DNA-binding domain [Bifidobacterium longum
           DJO10A]
          Length = 64

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT RE E L  I+ G ++ EIA  L IS  TV  ++A I+ K   + R  A+ +A  N+
Sbjct: 3   ELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFAYENH 62

Query: 245 IV 246
           +V
Sbjct: 63  LV 64


>gi|330809462|ref|YP_004353924.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377570|gb|AEA68920.1| putative two-component response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 216

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 40/235 (17%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D      +S+L     +  R+     T  +  +     +  GAS  +L      
Sbjct: 17  VFVVDDDASMRDALSNLLRSVGI--RVETFASTADFLQQ----PKTEGASCLVL------ 64

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D  +      D  R +A S       ++      F      +  ++         
Sbjct: 65  -----DVRLQGSSGLDFQRQLAGSNVTI--PII------FITGHGDIEMSVKAMKAGAVD 111

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +  F    +   +         +  D                +       +   LT R
Sbjct: 112 FLAKPFREQDLLDAVSAA------LQADVKRRAV---------ERQLADLHARYETLTAR 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E +T+ ++G  + +IA  + +S  TV  +    M+K   K+ +  +  A    
Sbjct: 157 EKEVMTFAAKGLMNKQIAGQMNLSEITVKIHRGHAMKKMHAKSFADLVRMAESLG 211


>gi|237730973|ref|ZP_04561454.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
 gi|226906512|gb|EEH92430.1| DNA-binding transcriptional regulator CsgD [Citrobacter sp. 30_2]
          Length = 216

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 42/76 (55%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G ++ EIA  L IS NTV  ++ ++
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNIEIARSLFISENTVKTHLYNL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|92117445|ref|YP_577174.1| response regulator FixJ [Nitrobacter hamburgensis X14]
 gi|91800339|gb|ABE62714.1| two component transcriptional regulator, LuxR family [Nitrobacter
           hamburgensis X14]
          Length = 205

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 65/240 (27%), Gaps = 40/240 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           + N+ +  +D      +  L   +     +                     A        
Sbjct: 4   KGNVYVIDDDPAMRDSLDFLLGSAGFKVMLFDAA-----------------ADFLNAHAG 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
             F     D  +      DL+R +  +              +       +P  +      
Sbjct: 47  LRFGCLISDVRMPGIDGMDLLRRLKANASP--------LPVIIMTGHGDIPLAVEAIKLG 98

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +    F+  R+   +                 +     +  +   S +    +   L
Sbjct: 99  ALDFIEKPFEDERLIGMIETA--------------LQQSPGHAKSDAISAE-IASRIASL 143

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE + +  +  G ++  IA    IS  T+  Y A++M K      S  I  A+R  I+
Sbjct: 144 SQRERQVMDGLVAGLSNKLIAREHNISPRTIEVYRANVMTKMQAHNLSELIRLALRAGIL 203


>gi|302542744|ref|ZP_07295086.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460362|gb|EFL23455.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 201

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + LA ++ L+  +    ++       G       R        LD  
Sbjct: 2   IRVLLAEDQSMVREALAALLGLEDEIEVVAQVAR-----GDEVVDAARAHRPDVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +  +E       ++         F              + +       
Sbjct: 57  MPGLSGIEAAAALHAAE-----PGVRIV---ILTTFGRPGYLRRAMESGADAFLVKDAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A++   +  +    R+I                               LT RE E L   
Sbjct: 109 AQLADAIRRVLRGERVIDPTLAAA----------------ALVDGASPLTAREREVLGAS 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T+ E+A  LG+S+ TV NY+++ ++KTA + R+ A+  A     +
Sbjct: 153 ADGSTNAELARALGLSQGTVRNYLSTAIQKTAARNRADAVRIARDKGWL 201


>gi|240138479|ref|YP_002962951.1| Transcriptional regulatory protein fixJ [Methylobacterium
           extorquens AM1]
 gi|240008448|gb|ACS39674.1| Transcriptional regulatory protein fixJ [Methylobacterium
           extorquens AM1]
          Length = 215

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 22/215 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHF----LLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  +D  ++    +  L + VG         +   +     +   +V+     ++     
Sbjct: 7   VHVIDDDMAVRQSLAFLLQTVGIPVRVYDSAVAFLNALPAVQRGCVVTDIRMPEIHGLEL 66

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                     L     +       +P  +         +    FD   +   +       
Sbjct: 67  QRRLKPLDLSLPI---IVITGHGDVPLAVEAMKAGAVDFIEKPFDDEVVLSAVRSALD-- 121

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                        L A ++           +   L+ RE + L  +  G  +  IA  LG
Sbjct: 122 -------------LHARESERKAQTTETVVRLGSLSERESQVLAGLVAGHPNKVIARELG 168

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IS  TV  Y A++M K    + S  +  ++   +V
Sbjct: 169 ISPRTVEIYRANVMTKMQASSLSELVRMSLLTGVV 203


>gi|224535141|ref|ZP_03675680.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523238|gb|EEF92343.1| hypothetical protein BACCELL_00001 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 209

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 38/73 (52%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              + H   + +L+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ 
Sbjct: 132 PCGNPHADSEHDLSPREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSV 191

Query: 234 SGAIAYAVRNNIV 246
           +G   YAV +  V
Sbjct: 192 AGLTIYAVMHGYV 204


>gi|189461600|ref|ZP_03010385.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
 gi|189431710|gb|EDV00695.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136]
          Length = 202

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             N  +  D        L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK 
Sbjct: 119 LMNFAEEDDSGQD---TLSQREKEIIGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKL 175

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + +G   YA+ N +V
Sbjct: 176 QIHSAAGLTIYAIVNKLV 193


>gi|91788297|ref|YP_549249.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91697522|gb|ABE44351.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 246

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 22/228 (9%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLAR---MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           ++ +D      ++ L    D+         L         +  +   +      + R  L
Sbjct: 20  ISDDDRHVMPTITVLDVSDDITLHQSWRAALTSQADI-SLIDEVRNTL--QLLRITRSLL 76

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD     D    L+  +            +            + +          
Sbjct: 77  PDVFLLDWRFQFDDGSPLLPRI-----HTISPKTKTILFCDVMGLRQVVDATA---HGVR 128

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---ANMFKSYDVHWGKDFE 185
                     +    + ++      I R  + E   + +++    N+    +        
Sbjct: 129 GLIPKKSPPEQWLKAIRVVHAGDIWINRKLMAEALEVLSHRPGHHNLLAELEPEI----- 183

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           LT RE E + W+  G T+ EIA  + IS NTV  ++  +  K     R
Sbjct: 184 LTKREWEVVHWVGLGMTNKEIARAMTISDNTVKTHLQHVFGKLKVGRR 231


>gi|302558693|ref|ZP_07311035.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
 gi|302476311|gb|EFL39404.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces
           griseoflavus Tu4000]
          Length = 268

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 61/281 (21%), Gaps = 78/281 (27%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  ++    + ++ L T  + +  +                    G   +   R     
Sbjct: 1   MVADDNPVVRAGLTALLTGREDITVVAEAAD---------------GREAYEATRTHRPD 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +        +             V+                           Y
Sbjct: 46  VVLLDVRMPGVDGISAL-----PHLVGIAPVV------MLTYSGESEIVQEALRRGAGGY 94

Query: 131 CSL-TFDVARIRIGLMLLFPKGRII----------------------------------- 154
                F   ++   +  +                                          
Sbjct: 95  LVHGEFTADQLVSAIRDIEQGRPHFTPTAAGALLSQLRRDTRPGATLPEGLGSASATPRN 154

Query: 155 -----------LRDRLWEIGLLAAYQANMFK-----SYDVHWGKDFELTGREVECLTWIS 198
                             +  L    A                  ++L+ RE E +  I+
Sbjct: 155 PTGISAPHISTSPTSAENLSQLQPDMAPSSSGWTGGRPAAPDRSGYQLSTREAEIMDLIA 214

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G T+ +IA    IS  TV N+I  I  K  + +RS A A 
Sbjct: 215 SGMTNQQIAATCFISEKTVKNHINRIFAKLHSTSRSEAAAK 255


>gi|28975403|gb|AAO61797.1| response regulator VbsA [Vibrio parahaemolyticus]
          Length = 198

 Score = 88.4 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 68/236 (28%), Gaps = 40/236 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++N ++  +       +  L     +   +       S    +               
Sbjct: 1   MNKMNCLIFDDHPLVCVAIKSLLKEQGMTNEVFTATSAKSAFKTLKE------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  ++    FD  + +     +           +F     +   +     
Sbjct: 48  --SNIELLILDVNLADCDGFDFYKRIKSHGYE--------GKVIFFSAETSQMYSQMAFR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   + +   ++  +  +                    Y    FK       +  
Sbjct: 98  SGADGYVCKSENHDILKDAIEAVVKG-----------------YTFFKFKQVANEVREMP 140

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE   + ++ +GK++ +IA +L IS  TV+ Y   ++ K   K        A
Sbjct: 141 QLSSRESAVMKYLLQGKSNRDIASVLSISDKTVSTYKRRVLDKFNVKNIVELTRVA 196


>gi|307292976|ref|ZP_07572822.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
 gi|306881042|gb|EFN12258.1| two component transcriptional regulator, LuxR family [Sphingobium
           chlorophenolicum L-1]
          Length = 204

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 56/189 (29%), Gaps = 23/189 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G      VR        LD  +      ++ + +                 +       +
Sbjct: 37  GVEFLKDVRNAAEGCILLDVRMPQMDGLEVQKELNERGIAM--------PVIILTGHGDV 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              ++        +    F+ A +   +   F +   +                      
Sbjct: 89  SIAVSAMKAGAVDFIEKPFEKAVLLAAIESAFERLADVEGRATRAA-------------- 134

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                +   L+GRE + L  ++ G  +  IA  LGIS  TV  + A++M K   ++ S A
Sbjct: 135 -DATIRIAALSGREQDVLKGLARGLPNKTIAYDLGISPRTVEVHRANLMTKLGVRSLSEA 193

Query: 237 IAYAVRNNI 245
           +  A    I
Sbjct: 194 LRIAFSAGI 202


>gi|188584153|ref|YP_001927598.1| LuxR family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347651|gb|ACB83063.1| two component transcriptional regulator, LuxR family
           [Methylobacterium populi BJ001]
          Length = 220

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 13/210 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL----LVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           ++ +D           + E  G    +    +V       +    +V  D  F       
Sbjct: 13  VLVIDDHPIVLQGCRRVLEDAGIETVVEATGVVSGYRAFHRLRPPVVICDLTFQGSGLAG 72

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
           L+   +   +      L   + +               Y         +      +    
Sbjct: 73  LALIRRMRAIEPETRVLVFSMHNDPVIVSRALEAGALGYVLKDHASNELFQAFDRVRAGE 132

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             + R    E+ +L           D     + +LT RE + L  +++GK+   IA  L 
Sbjct: 133 VYLDRRLATEVAML---------RADPRRTPETQLTPREQQILARLAQGKSYGAIAADLS 183

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +S  TV N  + + +K   +T +  I  AV
Sbjct: 184 VSYKTVTNACSQMRQKLRVRTLAELIHVAV 213


>gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
 gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501]
          Length = 218

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 12/177 (6%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             LV  +  ++   D  +      +  +    S  D+  +          P      E +
Sbjct: 39  VSLVGLEPPEQHDADLFLVDAGHSEAEQI--SSLIDQLDDHTPVALVNIVP---EQAEQL 93

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                +             +  G+ +L   G  + R       +L       ++      
Sbjct: 94  VEKHPVIRGVFYSHATREHLLEGIRVLLKGGDWLPR-------VLTERLLGQWRRMRQLA 146

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                LT RE E L+   +G ++ EIA  L +S +T+ ++I +++RK     R+ A 
Sbjct: 147 ESKTSLTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEAA 203


>gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708]
          Length = 91

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                G    L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   AASESGTPVSLSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRVA 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|218680630|ref|ZP_03528527.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT
           894]
          Length = 186

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 2/134 (1%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           ++ V+ L  R +LL R+  +  T      + ALTEYVGASH+LL R DL QE  LD IVS
Sbjct: 20  SAVVADLLPRDELLQRLHGVADTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVS 79

Query: 80  SDWPFDLVRCMALS--EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           SDWPFDLVR +A            L++  ++F P F  +P+N   P G   +YCSLTF+V
Sbjct: 80  SDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDNADVPDGASRQYCSLTFNV 139

Query: 138 ARIRIGLMLLFPKG 151
            R R+ LM LF +G
Sbjct: 140 GRSRLALMFLFRRG 153


>gi|320185068|gb|EFW59848.1| Positive transcription regulator EvgA [Shigella flexneri CDC
           796-83]
          Length = 204

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 74/238 (31%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +     + + +L  ++D+                +  LTE  GAS    V   
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDI--------------EILAELTE--GASAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                 +G L                K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSL-----------TSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|93009160|gb|ABE97934.1| GacA [Pseudomonas sp. RR4-5-13]
          Length = 181

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 18/187 (9%)

Query: 49  MYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
           +  + E   G +   + R        +D  +      +  R +  S        ++    
Sbjct: 12  LQVVGEADSGEASLKVARELKPDVVLMDVKMPGIGGLEATRKLLRSH-----PDVKVVAV 66

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
             C      P            Y +    +  +   + L+F   R I      ++ L   
Sbjct: 67  TVC---EEDPFPTRLLQAGAAGYLTKGAGLDEMVQAIRLVFAGQRYISPQIAQQLAL--- 120

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                 KS+         L+ RE++    I   +    I+  L +S  TVN Y   I  K
Sbjct: 121 ------KSFQPQGSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKTVNTYRYRIFEK 174

Query: 228 TATKTRS 234
            +  + +
Sbjct: 175 LSITSNA 181


>gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 305

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 70/222 (31%), Gaps = 31/222 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LAR+         T    A  +  G   FLL      +         
Sbjct: 106 VDYVTKPIAVEEMLARIRVHLANARMTQSARAALDVSG--RFLLAVNREGRL-------- 155

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL-PENITPPAGMDNRYCSLTFDVA 138
             W     + +                EL  P       +      G      S+     
Sbjct: 156 -MWATPQAQRLLSDSLGT-------AEELVLPDALRQWLDQAQKGKGGTKPMASVPDHPE 207

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                +    P   ++                         +  +F LT RE E L+W+S
Sbjct: 208 LRLYYMGGAGPNEFLL------------RLAKESSGELPKEFSSEFGLTVRESEVLSWLS 255

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +GKT+ +IA ILG+S  TV+ ++  I  K   + R+ A A A
Sbjct: 256 KGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297



 Score = 38.4 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 39/154 (25%), Gaps = 8/154 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D    +  L   +     M  +    GA+   +V         LD+++     F+ 
Sbjct: 12  LVVDDSPETLRLLTDALD-GAGMTVMVALDGAAAMRIVDQITPDIILLDAVMPGIDGFET 70

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +          V+      F          +         Y +    V  +   +  
Sbjct: 71  CRKLKREAGLSNVPVI------FMTGLADTEHIVQGLEAGGVDYVTKPIAVEEMLARIR- 123

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +      + +     + +   +   + +   + W
Sbjct: 124 VHLANARMTQSARAALDVSGRFLLAVNREGRLMW 157


>gi|256392339|ref|YP_003113903.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256358565|gb|ACU72062.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 224

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 69/227 (30%), Gaps = 25/227 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            S V   P   D L R+      +   +   ++ +      F+  R        LD  + 
Sbjct: 17  VSVVEDHPLYRDALTRLFEEAGDMDVDVVAGSVGK------FVACRPRRDGIVVLDLTLP 70

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                  V  +                 L         + +   +     + S   + A 
Sbjct: 71  GVKGSAAVLQINGMGN----------RVLVVSGEAAKSDVLGAISAGARGFLSKESEGAE 120

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           I   +  +      +       +              +   G   EL+G+E + L  ++ 
Sbjct: 121 ILRAVREIAAGNSYVSPTLASIVLTT---------EQNRQAGPRLELSGQEKQVLRLVAA 171

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G+   +IA+ +GIS  TV +Y+  I  K   + R+     A+   ++
Sbjct: 172 GERDRDIAMAMGISVRTVRSYLDRIRDKIGARRRADMTRAAIELGVL 218


>gi|229589676|ref|YP_002871795.1| putative LuxR family regulatory protein [Pseudomonas fluorescens
           SBW25]
 gi|229361542|emb|CAY48418.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens
           SBW25]
          Length = 208

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +S      D       +   +     +  L    GA    + R        LD  +    
Sbjct: 1   MSKALIVDDHPFIRATVKHLLKQEGFVEILEAGNGADAMQIARVHRPDLVILDLAMPKLG 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++  +   E             L    +  +  +          + + T ++  ++ 
Sbjct: 61  GLEVISRIKALELP--------CKILVLTSYLAVFFSTRCMRAGAMGFVAKTGELDELQK 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +                 L                    L+ RE+  L  ++ G  
Sbjct: 113 AIRAIRSGYSCFPS--------LPTSSVRRDDLQTTEQELVDALSDRELTVLQKLALGLG 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  T++ Y   +  K    +      +A RN+++
Sbjct: 165 NKEIAEDMLLSHKTISTYKTRLKEKLRMSSVVHLSKFAQRNHLI 208


>gi|4322356|gb|AAD16025.1| regulatory protein CsgD [Escherichia coli]
          Length = 83

 Score = 88.4 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ ++
Sbjct: 2   LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNL 61

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 62  FKKIAVKNRTQAVSWA 77


>gi|315618207|gb|EFU98797.1| putative csgAB operon transcriptional regulatory protein
           [Escherichia coli 3431]
          Length = 216

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 43/76 (56%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           LA+Y      +Y  +  +   LT RE E L  +  G +++EIA  L IS NTV  ++ S+
Sbjct: 135 LASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYSL 194

Query: 225 MRKTATKTRSGAIAYA 240
            +K A K R+ A+++A
Sbjct: 195 FKKIAVKNRTQAVSWA 210


>gi|326772944|ref|ZP_08232228.1| two-component system response regulator [Actinomyces viscosus C505]
 gi|326637576|gb|EGE38478.1| two-component system response regulator [Actinomyces viscosus C505]
          Length = 244

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 59/241 (24%), Gaps = 27/241 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D    ++ L   +     M  +     G         D      LD  +     
Sbjct: 3   RLGLADDEPLHIMGLATLLGAQPDMEIIWRAADGKEALARNAADPADVLLLDVQMPGLSG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +                 +      T    +       +     +     +   
Sbjct: 63  PATTRELMARG--------ATGRVVILTTSDTDAPVMDAIEAGASGLLLTSTPPQELAAA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF------------------E 185
           +  +     +I       +   A              G+                     
Sbjct: 115 IRAVHDGSSVISPGPTRRLLTAARTGHVSGVRAREGAGRHASEDSVEALRAAEASQQVAG 174

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G +  EI     +S  TV  +++ ++  T  + R   +  A+R  +
Sbjct: 175 LTQREREILALIALGLSDQEICDRKWLSMPTVTTHVSHLLSTTGCRDRIQLVLLALRGGV 234

Query: 246 V 246
           V
Sbjct: 235 V 235


>gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311]
 gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           CC9311]
          Length = 83

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ + 
Sbjct: 5   LSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHG 63


>gi|212691634|ref|ZP_03299762.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855]
 gi|212665823|gb|EEB26395.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855]
          Length = 256

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 34/77 (44%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
             MF    V       LTGRE+E L  I  G  S EIA  L IS  TV+ +  +++RK  
Sbjct: 179 GEMFSPGVVIMNPVVSLTGREMEILRLIQRGFLSKEIADKLCISIYTVHIHRQNLLRKLG 238

Query: 230 TKTRSGAIAYAVRNNIV 246
                 AI     + ++
Sbjct: 239 VHNSLEAIRLGQESGLL 255


>gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str.
           NATL1A]
 gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. NATL1A]
          Length = 90

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 42/70 (60%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + ++       L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R 
Sbjct: 3   TGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRV 62

Query: 235 GAIAYAVRNN 244
             + +A+ + 
Sbjct: 63  ALLNWAMDHG 72


>gi|114707721|ref|ZP_01440616.1| probable two-component response regulator [Fulvimarina pelagi
           HTCC2506]
 gi|114536965|gb|EAU40094.1| probable two-component response regulator [Fulvimarina pelagi
           HTCC2506]
          Length = 229

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 63/217 (29%), Gaps = 23/217 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMR--MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            H   R  L A +              + A     G           F    LD  +   
Sbjct: 9   DHPLFRDALRAAIEAAVPESEILETDTIEAAIVACGEET------KSFDLALLDLTMPGV 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
             F+ +  +             +   L               +     + S +     + 
Sbjct: 63  SGFEGLLELRAR--------FPKLPILVVSALDDPKIVRRVLSYGAAGFVSKSAKKLDLA 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +      +  +      L+A    +     D    +   LT +++  L+ I +G 
Sbjct: 115 TAITEVLSGSVYVQDE------LIANGPEDHP-DVDSLASRVASLTPQQLRVLSMIRQGL 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            + +IA  L +   TV  +++ I+RK    +R+ A+ 
Sbjct: 168 LNKQIAYELSVGETTVKAHVSEILRKLNVFSRTQAVI 204


>gi|222109015|ref|YP_002551281.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
 gi|13405830|gb|AAD31606.2| TraR' [Agrobacterium radiobacter K84]
 gi|221727937|gb|ACM30987.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
          Length = 234

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 22/219 (10%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + ++ G + +  +       Q    I  +++  D        + D    V++R
Sbjct: 21  LKTGLADVADHFGFTGYAYLHI-----QHKHIIAVTNYHHDWRSLYFDKKFDALDPVVKR 75

Query: 105 PTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                                            G+ +                 L   + 
Sbjct: 76  ARSRKHVFAWSGEQERPALSKEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLASERT 135

Query: 152 RIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            I L   +  +         +    F            L  +E   L WI+ GKT +EIA
Sbjct: 136 AIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAVWLDPKEATYLRWIAVGKTMEEIA 195

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G+  N+V   +   M++   ++++   A A+R  ++
Sbjct: 196 DVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|194432240|ref|ZP_03064528.1| positive transcription regulator EvgS [Shigella dysenteriae 1012]
 gi|194419443|gb|EDX35524.1| positive transcription regulator EvgS [Shigella dysenteriae 1012]
 gi|332086017|gb|EGI91181.1| positive transcription regulator evgA [Shigella dysenteriae 155-74]
          Length = 204

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +     + + +L  ++D+                +  LTE  G S    V   
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDI--------------EILAELTE--GGSAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                 +G L                K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFSFSLNRFVGSL-----------TSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|149912597|ref|ZP_01901131.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149813003|gb|EDM72829.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 206

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
           +   +       +   +   +++ +R+    +      +  D   +I     +       
Sbjct: 82  IDMAVDALDAGASGILTYNSEMSDLRVAARRVMNGDNYVQPDMAMDI-----FAKLRQAE 136

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +   LT RE + +  + +G T+ +I+V L IS  TV +Y+ S+  K     R  
Sbjct: 137 AKRKEAERLRLTARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLE 196

Query: 236 AIAYAVRNN 244
            +  A R  
Sbjct: 197 VVLEAQRLG 205


>gi|328544835|ref|YP_004304944.1| Two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326414577|gb|ADZ71640.1| Two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 201

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 24/221 (10%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            T+    +    D  A    L              E  G +     R        LD  +
Sbjct: 1   MTTGAQAIYIVDDDPAVRDALAVVFEMEGFAVETFED-GDTFVEAARLKAPASVILDVHM 59

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 D+++ ++         +     +   P        +         +    F+  
Sbjct: 60  PGRSGIDVLKALSADHY--DAPIFIISGQGDIP------MAVEAIRNGAFDFIEKPFN-- 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                + ++      I   R           +         +    +LT RE E L+ I+
Sbjct: 110 ----AVTVVDRVREGIAATRAR---------SQTQSDLPGDFAGAEQLTRREREVLSEIT 156

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            G ++ E    LGIS  TV  + A IM K   +  +  +  
Sbjct: 157 SGASNKEAGRSLGISPRTVEVHRARIMEKLGARNAADLVRI 197


>gi|182416054|ref|YP_001821120.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177843268|gb|ACB77520.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 210

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 59/189 (31%), Gaps = 19/189 (10%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++  +      LD  +     F++V  +            +          +TL
Sbjct: 25  GVQAVEVILREKPDAVILDLSLPDMDGFNVVDRVLS-----VLPETRILVVSSHCDDYTL 79

Query: 117 PENITPPAGMDNRYCSLTFD-VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                      + +     + V  ++  L  +                  AA+Q      
Sbjct: 80  FRVEKS---GVHGFLDKNSNTVEALQDALKSIEEGRVYFS----------AAFQRAKLAR 126

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +        L+  E   L+ I +G + +EI   L +S  TV  + + +++K   K    
Sbjct: 127 RNDPRSFTKVLSEWERAILSLIGQGLSDEEIGERLQLSPRTVQTHRSHLLQKLKLKGTPK 186

Query: 236 AIAYAVRNN 244
            IA+A+ + 
Sbjct: 187 LIAFAIEHG 195


>gi|159045214|ref|YP_001534008.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157912974|gb|ABV94407.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 228

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 28/234 (11%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +S        +  +   D   S   ++   T                 
Sbjct: 11  MIVDDHPLFLDALSMTLRTVSDIDEIATADTMESALSQLDGAT---------------PD 55

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      D +  +  +              +            +      + +
Sbjct: 56  VIVLDLNLPDVNGLDGLIRLKTAVPSTP--------VVVVSSMADNRMITSTLRVGASGF 107

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                     R     +         + +           +   + +    +   LT ++
Sbjct: 108 VPKHSKREVFREAFDAIQNGTVFTPENYVPN-----TDADSPQNNAEEALARLGLLTKQQ 162

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
              L  I  GK + +IA  L I+  TV  ++ +IMRK   ++R+ A+  A   N
Sbjct: 163 ARILQLICAGKLNKQIAYDLSIAETTVKAHVTAIMRKLGVQSRTQAVLIAQEAN 216


>gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9211]
 gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9211]
          Length = 90

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 39/61 (63%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ +
Sbjct: 12  MSLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 71

Query: 244 N 244
            
Sbjct: 72  G 72


>gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74]
          Length = 147

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLF---PKGRIILRDRLWEIGLLAAYQANMF 173
                   G+            R    L        +  I+  +   ++ LL        
Sbjct: 13  LWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMAL 72

Query: 174 KSYDV--HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +       +   + RE E L W +EGKTS EIA+IL IS NTVN +  ++ +K    
Sbjct: 73  MRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAP 132

Query: 232 TRSGAIAYAVRNNIV 246
            ++    YA    ++
Sbjct: 133 NKTQVACYAAATGLI 147


>gi|326403930|ref|YP_004284012.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|325050792|dbj|BAJ81130.1| LuxR family transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 319

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 18/215 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-----QKLDSIVSS---DWPFDL 86
           R+  +D +      + +     GA   +              +  D ++     D P   
Sbjct: 101 RIGLVDSSRLTRECLASALVAQGADFAVRSFVTAEDCIDAAGEGFDLLLCHAHEDGPAAK 160

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC-SLTFDVARIRIGLM 145
                ++   + +  L                           +  +    +      + 
Sbjct: 161 AVLADIAALREAFPGLPIVVLHDAAETPDTGFVRLLFQEGAQGFVPTRMVGIPLAVAAIR 220

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   GR    D L +         +           D  LT R+      + +GK +  
Sbjct: 221 FVQAGGRFAPVDLLLD---------DRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKI 271

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  LG+S +TV  +I +IMRK     R+ A+  A
Sbjct: 272 IAYELGVSESTVKVHIKNIMRKIGATNRTQAVYKA 306


>gi|307324066|ref|ZP_07603275.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306890515|gb|EFN21492.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 430

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 9/239 (3%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
            R  +   + ++ L  R+D    ++      ++     +L   +      L       E+
Sbjct: 190 ARAVDLAVTALAELRDRTDRDQALVEESAGDAFARLAESLRPVLRGLAVRLDLGPPGTEE 249

Query: 73  KLDSIVSSDWP-------FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             D ++ +D           +V  M   +             +         E       
Sbjct: 250 GADRLLPADVANTARAVVRAVVHAMLDEQGPGQDGAPHPVRRVHVGWKVGDGELRATVRD 309

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                   T   AR     +        +  D + E G L      +           + 
Sbjct: 310 DGPGVLRRTALDARRVGERLSALGGR--LDVDAVPEWGTLVTATVPLGPPQPARKDPLYV 367

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  RE+E L  ++ G+ + +IA  L IS +TV  ++A+I+ K    +R  A A A    
Sbjct: 368 LGARELEVLERLARGRRNRQIAQELHISESTVKFHVANILEKLGVTSRGEAAALAHTWG 426


>gi|291287493|ref|YP_003504309.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884653|gb|ADD68353.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 219

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 32/240 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++ +  +       ++ +  +   +      D       +++ +            
Sbjct: 1   MKNYSVFIIDDHAVVREGLAMVINQEADMEVCGSADDGPVALQKLFNI------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +++    ++++ +        Y  +             +        
Sbjct: 49  ---EPDIIIVDLSLTTSDGLEVIKAIKA-----RYPNIFILVLSMR---EEMVFAERCVR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   +   + I   L  +                    Y  N   +      KD 
Sbjct: 98  AGASGYVMKSEKPSVIIEALRKIIKGKIYFSEKMT-------EYILNKAMNVKNCEDKDV 150

Query: 185 E--LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE +    I  G T+ +IA  L +S  T++ +  S+  K   K+      YA++
Sbjct: 151 VEALTDREFQVFQMIGNGFTTKQIATKLNLSVKTIDAFRESMKHKLGLKSAPELSQYAIK 210


>gi|256376071|ref|YP_003099731.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255920374|gb|ACU35885.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 201

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 66/229 (28%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R              A M+ ++  +     + +     G                LD  
Sbjct: 2   IRVLLADDQALVRGAFAAMLGMESDIEVVASVGS-----GDEVLPEALRTEPDVALLDVQ 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +           L R   + C  F          A     +       
Sbjct: 57  MPGLDGLEAAALLHER--------LPRCRVIVCTTFGRPGYLARAMAAGAAGFVVKDASP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            ++   +  +    R++  D   E                        LT RE + L   
Sbjct: 109 EQLVDAVRRVHAGLRVVDPDLAAE----------------SLAQGPSPLTARERDVLALA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G T  ++A  +G+S  TV N++++ + KT  +TR+ A+  A  +  +
Sbjct: 153 RDGGTVADLAKGVGLSEGTVRNHLSAAIGKTGARTRAEAVRIAEESGWL 201


>gi|188591974|ref|YP_001796572.1| response regulator receiver, luxr family [Cupriavidus taiwanensis
           LMG 19424]
 gi|170938348|emb|CAP63333.1| putative Response regulator receiver, LuxR family [Cupriavidus
           taiwanensis LMG 19424]
          Length = 209

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       + H  ++   +  +I  D                G      VR  
Sbjct: 2   TTILIVDDHPAMRLVLRHHLSQLLGVDEVIEADN---------------GQCAIETVRTR 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           +     LD  +      D+   +          +  +   L                   
Sbjct: 47  MPDLVLLDLDIPRSSGLDVAPRLRA--------IHPQVRILVVTALDPAVFVSRSWQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S T D+  I   +  +     +            +    +              L+
Sbjct: 99  QGFVSKTQDIKEILRAVEAVLAGYTVFPVLGRGGAPRQSMSADDEMLR---------RLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  L  ++ G +   I+  L IS  TV++Y A IM K    +    + +A R  +
Sbjct: 150 DKELVVLQMLARGMSYKAISESLFISNKTVSSYKARIMNKLQVSSLVELVDFARRCRL 207


>gi|217971498|ref|YP_002356249.1| LuxR family two component transcriptional regulator [Shewanella
           baltica OS223]
 gi|217496633|gb|ACK44826.1| two component transcriptional regulator, LuxR family [Shewanella
           baltica OS223]
          Length = 212

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 29/237 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I+L  +     + V  L         M  +  +         ++E         +    
Sbjct: 4   KIILADDHPIILTGVRSL---------MAGIQPSCEIVAEANNVSELWHT-----LAQHE 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  + +D   D +  +    +            +     H L           N
Sbjct: 50  CDLLITDFSMPNDDNVDGMAMIKQLRRKY-----PNLPIIVLTQVHNLGVLQALMQIGIN 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   +A +   +  +      I       +           +     +    EL+ 
Sbjct: 105 GLLLKKSVIAELANTVKKVLSGSVYIGDAVRELLN----------EQGINQYSTPIELSL 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E+E +  ++ G +  ++A  L  S  T++    + M+K   K+ S    YA +  +
Sbjct: 155 KEIEVVRLLANGMSVTQVASYLNRSVKTISTQKTNAMQKLGLKSDSELFHYAQQQGL 211


>gi|15837574|ref|NP_298262.1| LuxR/UhpA family transcriptional regulator [Xylella fastidiosa
           9a5c]
 gi|9105902|gb|AAF83782.1|AE003935_8 transcriptional regulator (LuxR/UhpA family) [Xylella fastidiosa
           9a5c]
          Length = 210

 Score = 88.0 bits (217), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 71/235 (30%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +     + V  +   +    +++      +    + A             
Sbjct: 1   MSEMLILVVDDHPLFRNAVIQVLRENFQDTQVLDASSAATLRSALQAY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 49  --PQTELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                      +S      K  
Sbjct: 99  FGAAGFIPKSSPPETITEVVAAVLDGGTWFPP-----------MLVECSESDAQLAVKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 RLTPQQFRVLLCLADGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAAVL 202


>gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 93

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +     L+ RE+E L  ++ G T+ EI+  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   SAGKFQTAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVE 61

Query: 236 AIAYAVRNN 244
            + +A+   
Sbjct: 62  LVRWALHWG 70


>gi|126724410|ref|ZP_01740253.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126705574|gb|EBA04664.1| transcriptional regulator, LuxR family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 203

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 50/178 (28%), Gaps = 17/178 (9%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP--------AGMDNRY 130
            + +P   V    +         ++   +    V  +  +   P           +    
Sbjct: 33  INSFPQAWVDHYTVMGLAVQDPFMRWVYQNEGTVRWSELDLPDPAGVQQAYIEHNLRYGC 92

Query: 131 CSLTFDV--ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                D           +     R      L ++           +           LT 
Sbjct: 93  LVSVLDALSGAPTRSFGIFARNDREFKTSELAKLQ-------QSLRGAKPGIDDKPVLTE 145

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++E L  +S GK   EIA  L IS + V   + + M     KT + A + A R  ++
Sbjct: 146 AQIEALRLLSNGKRFKEIAHELNISESAVKARLRAAMTNIGAKTATQATSKAARLGLL 203


>gi|89900659|ref|YP_523130.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345396|gb|ABD69599.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 219

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 31/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +     + +    +     A +                    G     +VR  
Sbjct: 11  IRIAIVDDHAMVRAGLRQFFSDQIDFAVVAEAAN---------------GRGALDIVRKG 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D +  +     D           L    F       T      
Sbjct: 56  EVDVILLDISMPDQSGVDALIAIRARAPD--------LPVLILSGFAEEHYATTLLRQGA 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y +   D   I   +  +    + I       +            S          L+
Sbjct: 108 SGYLNKDCDPEEIVKAIRTVHRGRKYITAGVAELLA--------DGLSGGTDKPLHENLS 159

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE++    +++G+    +AV + +S  TV+ Y   +M K   +T S    YA+++ ++
Sbjct: 160 ERELQVFLRLAKGEAIGHMAVSMSLSVKTVSTYRTRVMEKMKLETNSDLTYYALKSGLI 218


>gi|311064166|ref|YP_003970891.1| response regulatorof two-component system [Bifidobacterium bifidum
           PRL2010]
 gi|310866485|gb|ADP35854.1| Response regulatorof two-component system [Bifidobacterium bifidum
           PRL2010]
          Length = 230

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 20/223 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R+  +D        +  +    G +  L    D     +       + P  L+  + +  
Sbjct: 2   RIAIVDDDPIVCQSLETILTATGTADVLWSANDGGAAIRRHFESPENHPDILLIDIQMPG 61

Query: 95  KDKYYNVLQRP------TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +      +          LF   F                Y     DVA I   L  + 
Sbjct: 62  MNGLDAAREILTKDPAARILFLTTFSNQAYIEQAMRLGTKGYLIK-QDVAAIAPALHAVM 120

Query: 149 PKGRIILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLT 195
               ++  D + ++       G   +  A+      +  G+         L  RE +   
Sbjct: 121 AGQVVLGADVIGKLTGPTAGAGYKGSDDASDTAGDGIPHGRRTSDGIDQLLNERERDIAA 180

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            ++EG  + +IA  L +S  TV N I++++ K A   R+    
Sbjct: 181 LVAEGLDNRDIAARLYLSEGTVRNRISAMLDKLALTNRTQLAI 223


>gi|221067196|ref|ZP_03543301.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|264678380|ref|YP_003278287.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|299532225|ref|ZP_07045619.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
 gi|220712219|gb|EED67587.1| two component transcriptional regulator, LuxR family [Comamonas
           testosteroni KF-1]
 gi|262208893|gb|ACY32991.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni CNB-2]
 gi|298719887|gb|EFI60850.1| two component transcriptional regulator, LuxR [Comamonas
           testosteroni S44]
          Length = 217

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 66/244 (27%), Gaps = 40/244 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R                         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAETFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLIERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F+   +   +  +                  A       +      
Sbjct: 96  NTMKKGALDFIQKPFNEEELLGLVERMLDH---------------AREAFTGHQQAASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLAKLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 VRNN 244
           +   
Sbjct: 201 LGQG 204


>gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 71

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           W +   L+ RE E L    EGKT++EIA  L +S  TV NYI+ ++ K   K R  AI  
Sbjct: 5   WQEQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITI 64

Query: 240 AVRNNIV 246
           A     +
Sbjct: 65  AEEKGWI 71


>gi|298207898|ref|YP_003716077.1| DNA-binding response regulator, LuxR family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850539|gb|EAP88407.1| DNA-binding response regulator, LuxR family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 210

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 75/229 (32%), Gaps = 30/229 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+++          ++ +  + +    +   +        +                   
Sbjct: 3   NVLIADAHPIVIKGLASILKKDEAYKIVAKSNDENELKNHI---------------SLKS 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + +     +++ +  +        ++       P        ++      +
Sbjct: 48  PDIIIMDIDMPNSSGLSIIKTLKQNN-----PEVRIIIFSHQP---EELYALSAIRFGAS 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y + +  + +I+  +  +   G  +          ++   ++   S      K   L+ 
Sbjct: 100 GYINKSKSLKKIKTAIDQVARGGIYLS-------KFISEKISSKSSSKTGVVSKYRALSS 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           RE+E L +IS+G  + +IA +L I+  TV+ Y   + +K    + +G I
Sbjct: 153 REIEVLNFISKGLKNKDIAEMLKINEKTVSTYKTRLQKKLNVDSVAGLI 201


>gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 91

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 39/66 (59%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  L+ RE++ +  ++ G T+ EIA  L IS+ TV+N++++I+ KTAT  R   + 
Sbjct: 5   VSHTSVTLSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVR 64

Query: 239 YAVRNN 244
           +A++  
Sbjct: 65  WAMQWG 70


>gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 230

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             + +LT REVE L  +++G  S EI+  L IS +TVNN+  +I++K  T     AI YA
Sbjct: 164 ETNIKLTKREVEILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYA 223

Query: 241 VRNNIV 246
            +  ++
Sbjct: 224 RKLGLL 229


>gi|307150230|ref|YP_003885614.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
 gi|306980458|gb|ADN12339.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 237

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 68/227 (29%), Gaps = 22/227 (9%)

Query: 32  LLARMIPLDCTVSWTMR-MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           L+A +             M    E   A  + +   D   +     +     P   V   
Sbjct: 9   LIASLATASNQQQMRSHFMDTAGELFIAQRWGIYLLDNLSQVAQVDV--KGLPDSFVDRY 66

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENIT------PPAGMDNRY------CSLTFDVA 138
                 +   VL+   E   P    L                 + +              
Sbjct: 67  EKIG-RQVDPVLKYVIERHAPAHEQLLLTQEQWKQSLLYQNCCSSFDHEHIMTGPIVGQG 125

Query: 139 RIRIGLMLLF-PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-----LTGREVE 192
           ++   +      +      D L  +  +  + +      +    +        LT RE++
Sbjct: 126 QLIGTVHFARIRETSAFNIDDLMFLSAICTHFSANLARINSPDPQLTSDWAKKLTSRELQ 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++ +++G T+ EI   L I++N+V   +  I RK   ++R+  +A 
Sbjct: 186 IISLVAQGLTNTEIGQELWITQNSVKQALKRIFRKLDVRSRAQMVAK 232


>gi|190575788|ref|YP_001973633.1| putative nitrate/nitrite response regulator protein NarL
           [Stenotrophomonas maltophilia K279a]
 gi|190013710|emb|CAQ47345.1| putative nitrate/nitrite response regulator protein NarL
           [Stenotrophomonas maltophilia K279a]
          Length = 216

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 73/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  I++  +     S V     +S  LA++  +                  A    L 
Sbjct: 1   MSEYTILIADDHPLLRSAVVQSLRQSLPLAQVREVASAE--------------ALAEALD 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
            +       LD  +     F  +  + +        V+   +    P      +      
Sbjct: 47  AYPDVDLVLLDLTMPGAHGFSAL--LHVRGSHPDIPVV-ILSSNDHPRVIRRAQQF---- 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++  +   +  
Sbjct: 100 -GAAGFIPKSAPAETIGEAVQAVLDGGLWFPA-----------MAAERSEADALLASRLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAYTLGLAENTVKVHVTAILKKLECHSRTQAAVL 202


>gi|182437656|ref|YP_001825375.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778292|ref|ZP_08237557.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
 gi|178466172|dbj|BAG20692.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658625|gb|EGE43471.1| two component transcriptional regulator, LuxR family [Streptomyces
           cf. griseus XylebKG-1]
          Length = 206

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 55/221 (24%), Gaps = 24/221 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    + L R             +       G     +          LD  +       
Sbjct: 10  LLADDEHLIRGALAALLALEEDLVVVAEAASGPEALAMALAHRPDVAVLDLQMPGADGVK 69

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +           L     +               A     +   T    R+   + 
Sbjct: 70  VATSLRTE--------LPHCRTMIVTSHGRPGHLKRALAAGVRGFVPKTVSARRLAEIIR 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R +  +                   D     D  LT RE E L   ++G    E
Sbjct: 122 TVHAGNRYVDPELAA----------------DAISAGDSPLTAREAEVLELAADGAPVAE 165

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    +S+ TV NY++S   K   + R  A+  A     V
Sbjct: 166 IAERASLSQGTVRNYLSSAATKIGAENRHTAVRLARERGWV 206


>gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 192

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L   D+ +  + D ++             ++E             L      +      
Sbjct: 27  ALELSDVLRRHRPDVVLVDLASEVAPSVEVVAEIAGAAP---DAAVLAMGRRWSPAVVGE 83

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             A   +    +   V  +   +  +   GR+I  +      L                 
Sbjct: 84  LLAAGAHGLIGMDAPVEALVGAVREVATGGRVIDAEVAVTALL----------------P 127

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               LT RE E L   +EG    EIA  L ++  TV N+++++MRKT T+ R  A+  A 
Sbjct: 128 PGSPLTRREAEVLRAAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQAR 187

Query: 242 RNNIV 246
           R+  +
Sbjct: 188 RHGWI 192


>gi|300022848|ref|YP_003755459.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524669|gb|ADJ23138.1| two component transcriptional regulator, LuxR family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 216

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 56/215 (26%), Gaps = 19/215 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++ +D           + E  G  +  L    +   +   +        DL         
Sbjct: 4   ILVIDDHPVVLQGCRRVLEDAGIENITLASNLIDGFRAYRNDKPDVIIIDLA---IKKGV 60

Query: 96  DKYYNVLQRPTEL-------FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                 ++R              +               N Y         I   L  + 
Sbjct: 61  LVGLTFIRRLRVHDKHTPILVLTMHEDPMIASQSLRLGANGYILKDTSSVDIVKALQAVR 120

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                +       I L+                    +T RE++ L  I++GK    IA 
Sbjct: 121 QGRPFLSHTVASAIALM---------ETKGRSNPLSGMTLRELQTLELIAQGKQYAAIAE 171

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            L +S  T+ N  + I  K   K+    +  A+ +
Sbjct: 172 ELHVSYKTIANTCSQIKAKLGVKSLPELMRIAIDH 206


>gi|239817406|ref|YP_002946316.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803983|gb|ACS21050.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 8/181 (4%)

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
             Q    ++      D      +      +  +     +               A     
Sbjct: 45  AAQAFSLVLVGMDGPDGDGAALIRHVRTAHPHIDA---IAMSETDDDGLVGAAIAAGAVG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWE-IGLLAAYQANMFKSYDVHWGKDFE--- 185
           Y     D A +   L  +   G  +        +GL AA       +         E   
Sbjct: 102 YVLTEADDAELAFLLRSIERGGAPVDSRIARRILGLFAASAQPKPIAIHPVPASLAEGKP 161

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE++ L  I++G ++ +IA  + +S NT+  +  +I RK + K+R+ A+  A +  
Sbjct: 162 LLSPRELKVLRLIAQGWSNQQIAEAVSLSVNTIEFHAKNIYRKLSVKSRTQAVHQATQQG 221

Query: 245 I 245
           +
Sbjct: 222 L 222


>gi|167567184|ref|ZP_02360100.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
 gi|167572592|ref|ZP_02365466.1| DNA-binding response regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 212

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 63/224 (28%), Gaps = 21/224 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            V       D L  ++                     S F LV+        LD      
Sbjct: 6   MVDRHVVLRDGLRHILEKSGDFEIDGEAGDAA-----SAFELVKHGHADIAILDQTTVGR 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              DL+  +  +        ++              +         + Y +       + 
Sbjct: 61  ECADLIHRIRQA-----APSMRILVMTAQMNQRHAAD---VFRAGASGYLTKQSGCEELI 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +   G  +      ++      Q++              L+ RE E    ++ G 
Sbjct: 113 AALHKIASGGVYVSMHVAEQLAENLHSQSDAPLHER--------LSKREFEVFRHLASGD 164

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T  EIA  LGIS  TV  Y A ++ K      S  + YAV + I
Sbjct: 165 TPAEIAQALGISAKTVRIYKAHVLDKLELPNESALVRYAVAHRI 208


>gi|160899372|ref|YP_001564954.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160364956|gb|ABX36569.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 218

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 30/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +     + +  +      +  +     +      +                 +
Sbjct: 6   LRILIADDHPAVLAGIESVLEDKHEIEIVGRAKNSTEIISFLKK---------------N 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D +  +  +   K +  ++        +   +    +      
Sbjct: 51  ECDVLVTDYSMPGGAYGDGLVML--NVIRKRFPSVKIVM---LTMIENIGIIKSLTNQGI 105

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
            R    T  +  +   +   +  G+ I         LL        ++         EL+
Sbjct: 106 YRIVHKTDSLGSLLPAIYAAYTDGQFISPSA---SKLLGGEWLGAVRT-------SIELS 155

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L     G T  EIA  L  S  TV+ +  ++M K   +     I Y +    +
Sbjct: 156 KREEEVLLLFISGMTVSEIAKKLYRSIKTVSTHKVAVMNKLGIRKDIDLIRYGIEMGWI 214


>gi|148654958|ref|YP_001275163.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148567068|gb|ABQ89213.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 204

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 16/216 (7%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHF--LLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           + R++ +  T +    + AL            +             ++ +     L    
Sbjct: 1   MIRVLIVAPTPALRAGLRALVAEANVEIVGETVSLTTPASIPPDTDVILAADDSVLTEAD 60

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
               ++  Y VL               + +           S     A +   +  +   
Sbjct: 61  RALGEEPRYAVLLLS------DDERQADVLRRLPLTAWGLLSHDAGAAELAAAIQAVAQG 114

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +   +    +           +   V       LT RE + L  +S+G ++ +IA  L
Sbjct: 115 LIVFASELALRLL--------HRRPLSVAEPVGEPLTARERDVLELVSQGLSNKQIAQKL 166

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IS +TV  +++S+  K    +R+ A+    R  I+
Sbjct: 167 QISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGII 202


>gi|91793679|ref|YP_563330.1| regulatory protein, LuxR [Shewanella denitrificans OS217]
 gi|91715681|gb|ABE55607.1| transcriptional regulator, LuxR family [Shewanella denitrificans
           OS217]
          Length = 210

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 22/182 (12%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
            D      +  +V      DL +   L         ++R       VF   P  I     
Sbjct: 41  ADKLDSHLVSVVVFDLATVDLQQSYQLQRL------IEREYSSIKTVFLNFPRQIDAKFL 94

Query: 126 MD----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
           +          L   ++ I  GL  +     ++  +                   D    
Sbjct: 95  IHPATSVGVFYLDSGISEISSGLNDILKGRSVMPFE-----------LHQSMLHDDTEDE 143

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  LT RE E L  +  G T+ +IA  L +S +T+  ++    RK    +R  AIA+A 
Sbjct: 144 TDS-LTIREREVLQALLSGSTNLDIANQLFVSESTIKTHLYRAFRKIGVSSRGQAIAWAQ 202

Query: 242 RN 243
            +
Sbjct: 203 TH 204


>gi|121605575|ref|YP_982904.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120594544|gb|ABM37983.1| transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 262

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 17/211 (8%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R D+++R+         T  +  L      S  L  R     + +    +  +       
Sbjct: 61  RHDIVSRLPGARSYAVGTDGLPFLLGKFHESWVLAGRQPNSLDFRNFEYLLGNASLP--- 117

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                      +       +   + H + +       +                 + +L 
Sbjct: 118 ----------DSFGSALRNMRSVLIHGMRDERGQYECLYVLLSVHEIPAESASGAIKVLM 167

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
           P     +   L ++  L   Q    KS  V   + F L+ RE++ + W++ GKT+ EI  
Sbjct: 168 P----FIDSALRQVAQLPQQQKPFAKSPRVVQEEIFGLSEREIQIMDWVAMGKTNSEIGS 223

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IL IS  TV N++  I +K     R+ A++ 
Sbjct: 224 ILNISGFTVKNHMQRIFQKLNVFNRAQAVSK 254


>gi|269102423|ref|ZP_06155120.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162321|gb|EEZ40817.1| transcriptional regulator VpsT [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 219

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              S    +  +   + ++   G  + R  L    +L  Y+ +   +          LT 
Sbjct: 101 GILSKDSPIEHLIKSIAVVIEHGLWLPRQTLE--QMLDYYRNHKPSNDTRLLPTQPLLTR 158

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           RE + L  ++EGKT+ EIA  L ++  TV ++I ++ +K   K R  AI
Sbjct: 159 REKQILGLLTEGKTNIEIAETLFVAETTVKSHIYNLYKKIDVKCRKEAI 207


>gi|153941243|ref|YP_001390894.1| LuxR family transcriptional regulator [Clostridium botulinum F str.
           Langeland]
 gi|152937139|gb|ABS42637.1| transcriptional regulator, LuxR family [Clostridium botulinum F
           str. Langeland]
          Length = 865

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E +  + EG ++ +I   L IS  TV  ++ +I  K     R  A+  
Sbjct: 803 LTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSKLQVSNRVQAVEK 856


>gi|148254242|ref|YP_001238827.1| response regulator FixJ [Bradyrhizobium sp. BTAi1]
 gi|146406415|gb|ABQ34921.1| two component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 205

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 32/220 (14%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL---------DSIVSSDWPF 84
           A++  +D   +    +  L +  G    L      F E            D  +      
Sbjct: 5   AKVYVIDDDEAMRDSLNFLLDSSGFEVVLFEHAQSFLEHLPSLSFGCVVSDVRMPGIDGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L++ M  +       +L             +P  +         +    F+  R+   +
Sbjct: 65  ELLKRMKAAGSSF--PIL------VMTGHGDVPLAVEAMKLGAVDFLEKPFEDERLVAMI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                +                   A          G+   L+ RE + +  +  G ++ 
Sbjct: 117 ETAIRQAEP---------------AAKNESITQDILGRIASLSPRERQVMDGLMAGLSNK 161

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IA    IS  T+  Y A++M K    + S  +  A+R  
Sbjct: 162 LIAREYDISPRTIEVYRANVMTKMGANSLSELVRLAMRAG 201


>gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 93

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  ++ G T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ +
Sbjct: 12  MSLSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 71

Query: 244 N 244
            
Sbjct: 72  G 72


>gi|153832084|ref|ZP_01984751.1| response regulator VbsA [Vibrio harveyi HY01]
 gi|148871699|gb|EDL70540.1| response regulator VbsA [Vibrio harveyi HY01]
          Length = 199

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 40/233 (17%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++N ++  +       +  L     +   ++    +      +               
Sbjct: 2   MNKLNCLIFDDHPLVCVAIKSLVESLGIANEVMTATSSKDALKSLKE------------- 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  ++    +D  + +     +           +F     +   +     
Sbjct: 49  --GNIGLLILDVNLADCDGYDFYKRIKSHGFN--------GKVIFFSAETSHMYSQMAFR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   + +   ++  +  +                    Y    FK          
Sbjct: 99  SGADGYVCKSENHEILKDAIEAVAKG-----------------YSFFKFKQTVEESRNVP 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            L+ RE   +  + +GK++ +IA +L IS  TV+ Y   ++ K          
Sbjct: 142 SLSSRESAVMKLLLQGKSNRDIADVLSISDKTVSTYKRRVLDKLNVNNIIELA 194


>gi|307726643|ref|YP_003909856.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307587168|gb|ADN60565.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 212

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +S +    D  A  + +   +   + +  + E   G +   + R        LD  +   
Sbjct: 1   MSTILIIDDHPAFRMIVRLQLMQLLSVEEVVEADNGQTAVEMARQYKPDLAILDLDIPRI 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  + L        +         P                + +   + ++  I 
Sbjct: 61  SGLDVIPRLKLVHP----PIRVMVLSGHDPAT----FAPRAMRSGVHGFVGKSQEMKEIM 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
            G+  +     +           +A   A+         G+   L+ +E+  L  +S+G 
Sbjct: 113 RGVEAVLAGYTVFP--VGPNGASIAPGVAS-----SGEEGRIMLLSDKELVILQMLSKGM 165

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           ++  I   L IS  TV+++   IM K   K+    I  A R  I
Sbjct: 166 SNKAIGDALFISNKTVSSHKTRIMHKLGVKSLVELIDLARRCRI 209


>gi|281494439|ref|NP_977559.2| competence protein A, putative [Bacillus cereus ATCC 10987]
 gi|290782529|gb|AAS40167.2| competence protein A, putative [Bacillus cereus ATCC 10987]
          Length = 219

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 75/222 (33%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D +A  +     +        +     A +   +    +    +D  + +    
Sbjct: 3   EVLIIDDHMAVGMGTKALIETEDICADVLFDS-AEYLSCITKKKYDVYLVDLFMPNLNGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ + +   + D    ++        P F+ L EN        +   S T    ++   +
Sbjct: 62  EVTKGI--LKHDPDAAIIIYTGFDIEPHFNLLLENN------ISGIISKTASKEQMITTI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                K  +I      ++ J      ++    +        LT RE E L ++ +G T+ 
Sbjct: 114 RCAKRKEVVIPLGLFRQLRJQQFSAKSVL-QSEKINEIPITLTQREREVLIFVQQGMTNK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IAV L +S+ ++   +  +  K    +R  A+  A    I+
Sbjct: 173 NIAVTLNLSQRSIEYTLTELFNKLRVSSRVEAVEKAKSLGIL 214


>gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Burkholderia thailandensis MSMB43]
          Length = 137

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 7/136 (5%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI-------GLLAAYQA 170
            +     G+         D +     L +            +  +               
Sbjct: 2   RDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDASDILRLLSLSQLLAGFVHAAM 61

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                  +      +LT RE E L W   GKT+ EI+ ILGIS  T+  ++++  RK   
Sbjct: 62  QELLDCRLRRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAARKIGA 121

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+  A    ++
Sbjct: 122 NNRAQAVVMASARGLI 137


>gi|110835379|ref|YP_694238.1| transcription regulator [Alcanivorax borkumensis SK2]
 gi|110648490|emb|CAL17966.1| transcription regulator, putative [Alcanivorax borkumensis SK2]
          Length = 203

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 22/181 (12%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
             L+    LD  +       L   +           +     L C    T          
Sbjct: 45  LPLYDLVILDQTMPHLDGLTLWSLIGRL--------VGGAKVLVCSGSATEATVRRAVQL 96

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             N +   +  V +I   +  +                L+A                   
Sbjct: 97  KVNGFVDKSESVEQILFAIREIMAGRSYFSES----FRLMAGAAPEEAL----------T 142

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT +++  LT + EG  + EIA  L +S NT+  ++  +  K     R+  I  A +  +
Sbjct: 143 LTRQQLAILTMLQEGHGNKEIARQLFVSVNTIKTHLRLLYEKLDVPNRTACIEKARQIGL 202

Query: 246 V 246
           +
Sbjct: 203 L 203


>gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 102

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 52/101 (51%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +L  +     +  + ++ L A    +      +       LT RE E + W SEGKTS E
Sbjct: 1   MLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSAE 60

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA+ILG+S +TVN++I +  RK     R   +A A+RN +V
Sbjct: 61  IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLV 101


>gi|254249292|ref|ZP_04942612.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124875793|gb|EAY65783.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 275

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + IV+  +         +  + ++ LA +   + +      +                 
Sbjct: 50  PIRIVIADDHPAVVIGARYELSATNTLAVVASANNSTELMETL---------------AN 94

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +      D +   +     K Y  L+        +              
Sbjct: 95  HPCDVLVSDYAMPGTEYGDGLAMFSA--ILKRYPNLRIV---VMTMMENAVALRALLDLG 149

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                S +   + + + +   +  GR +       +           ++     GK   L
Sbjct: 150 IACVVSKSDMTSHLTMAIHAAYTNGRYLSPSMDRIL-----------RAAGNSGGKAPAL 198

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +   + G + ++IA  L  S+ T++   +S M+K   +     + YA+   +V
Sbjct: 199 SARELEVIRLFASGLSVNDIAEQLSRSKKTISTQKSSAMQKLGIERDVDLVRYAIACGLV 258


>gi|291298992|ref|YP_003510270.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568212|gb|ADD41177.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 203

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 43/117 (36%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N             +        GR +      E   +    +  ++   +      +LT
Sbjct: 84  NGAVIPVARGYGHTMTDQPARGYGRTLTTQPGAEPRGIGPRTSAYYRGDQLPSINGKQLT 143

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            RE + L   ++GK+++ I   L +S +T+  ++  +  K     R+ A+A A R  
Sbjct: 144 VREYQILNCAAQGKSNEHIGRELFVSEHTIKTHLRRLFDKIGAANRAHAVAIAFRQG 200


>gi|237800190|ref|ZP_04588651.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023047|gb|EGI03104.1| LuxR response regulator receiver [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 135

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 8/121 (6%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +       + +   +  +  I+  +  +                       ++      
Sbjct: 13  VVRSREFGASGFIPKSSSLEVIQQAVRTVLDGEVWWPPQV--------NEVISVSDEAKA 64

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A  
Sbjct: 65  ASAGLASLTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAAL 124

Query: 239 Y 239
            
Sbjct: 125 L 125


>gi|124022984|ref|YP_001017291.1| hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
 gi|123963270|gb|ABM78026.1| Hypothetical protein P9303_12791 [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 119 NITPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
                    +    ++            L+     G     D            A   K 
Sbjct: 110 VDEALDAGADGVIFVSSVGSGNGDFIQSLLTTLKGGIYYPADVR--------ELARDTKQ 161

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +     D +LT RE+E L  I  G ++ EI+  L +S  TV + +++I+ K   + R+ 
Sbjct: 162 PNDAPVIDCQLTERELEVLNAIVGGLSNKEISESLFVSSETVKSNVSTIISKLGVRVRTQ 221

Query: 236 AIAYAVRNNIV 246
           A  +A+R+ IV
Sbjct: 222 AAVFAIRHRIV 232


>gi|332757226|gb|EGJ87563.1| regulatory protein sdiA [Shigella flexneri 2747-71]
 gi|333003265|gb|EGK22811.1| regulatory protein sdiA [Shigella flexneri K-218]
 gi|333017641|gb|EGK36953.1| regulatory protein sdiA [Shigella flexneri K-304]
          Length = 196

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 13/195 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +L R   ++        +    + +   ++ L         +      +++P   V    
Sbjct: 1   MLLRFQRMEAAEEAYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQ 60

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYCSLTFDVARIRIG 143
                    VL         +                    G+            R    
Sbjct: 61  AKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGF 120

Query: 144 LMLLF---PKGRIILRDRLWEIGLLAAYQANMFKSYDV--HWGKDFELTGREVECLTWIS 198
           L        +  I+  +   ++ LL           +       +   + RE E L W +
Sbjct: 121 LSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTA 180

Query: 199 EGKTSDEIAVILGIS 213
           EGKTS EIA+IL I+
Sbjct: 181 EGKTSAEIAMILSIT 195


>gi|221199403|ref|ZP_03572447.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2M]
 gi|221205694|ref|ZP_03578709.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2]
 gi|221174532|gb|EEE06964.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2]
 gi|221180688|gb|EEE13091.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD2M]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 40/241 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            +Q  + +  +DE   + V  L     L               R+ A         F   
Sbjct: 9   AEQSIVYVVDDDESMRTAVDMLLRSVGL---------------RVEAFASAHDFLAFE-- 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + D+     LD  +       +   +A ++         +   +F   +  +  ++    
Sbjct: 52  KPDVPSCLILDVRLKGQSGLAVQEQIAAADL--------QLPIIFMTAYGDIAMSVKAMK 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + +  F    +   +     +                    +  ++      +  
Sbjct: 104 AGAMDFLAKPFREQDMLDAVAAALARDE---------------RCRSAQRALGDLRSRYA 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E + +++ G  + +IA  + +S  TV  +    M+K   ++ +  +  A    
Sbjct: 149 TLSAREREVMAFVASGLMNKQIAAEMNLSEITVKIHRGQAMKKMDARSLADFVRKAEALG 208

Query: 245 I 245
           I
Sbjct: 209 I 209


>gi|124381986|ref|YP_001023905.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10229]
 gi|126442536|ref|YP_001061999.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           668]
 gi|126447520|ref|YP_001078722.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC
           10247]
 gi|134279276|ref|ZP_01765989.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|237508465|ref|ZP_04521180.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|251766848|ref|ZP_04819839.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
 gi|254183039|ref|ZP_04889631.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1655]
 gi|254200625|ref|ZP_04906990.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|254356552|ref|ZP_04972827.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|124290006|gb|ABM99275.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10229]
 gi|126222027|gb|ABN85532.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           668]
 gi|126240374|gb|ABO03486.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC
           10247]
 gi|134249695|gb|EBA49776.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           305]
 gi|147748237|gb|EDK55312.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH]
 gi|148025579|gb|EDK83702.1| transcriptional regulator, LuxR family [Burkholderia mallei
           2002721280]
 gi|184213572|gb|EDU10615.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1655]
 gi|235000670|gb|EEP50094.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           MSHR346]
 gi|243064620|gb|EES46806.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20]
          Length = 319

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 73  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 132

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 133 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDD 191

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 192 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASA 251

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 252 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 311

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 312 FASARGLI 319


>gi|282860465|ref|ZP_06269531.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
 gi|282564201|gb|EFB69737.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE]
          Length = 251

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 54/229 (23%), Gaps = 25/229 (10%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           D  A ++          +   LTE        L          L   
Sbjct: 2   HRVLLAGGPALVRDAYAHVVVASPAFVLQGQTATLTEA-------LTALTPTTCDLLLIE 54

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
                                    +       P                        + 
Sbjct: 55  ARELARVPWAAAQVSLRL--AAARTRTAVLGTIPPAGLPLLTE----AGVTGVFGPCLEP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 L  +     +I                +         G    LT RE E L  +
Sbjct: 109 DAFFTALDAVCRGAMVIAP------------APSRTPPAPAAHGSLSPLTQREREVLALV 156

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +    +  IA+ LG+S  TV ++I  +MRK A  +R+  +  A  + ++
Sbjct: 157 ATQPDNTAIALALGVSPLTVKSHINRVMRKLAVSSRAQLVILAYESRLI 205


>gi|256786460|ref|ZP_05524891.1| LuxR family two component system response regulator [Streptomyces
           lividans TK24]
          Length = 204

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 63/239 (26%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  ++      ++ L +  D L  +                    G     + R  
Sbjct: 5   VRVLLADDEHLIRGALAALLSLEDDLVVVAEAAT---------------GPEALAMARAH 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       +   +           L     L               A   
Sbjct: 50  APDVAVLDLQMPGADGVKVATSLRAE--------LPACKVLIVTSHGRPGHLKRALAAGV 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +   T    R+   +  +    R +  +                   D     D  LT
Sbjct: 102 RGFVPKTVSAQRLAELIRTVHAGNRYVDPELAA----------------DAISAGDSPLT 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E L   ++G    EIA    ++  TV NY++S   K   + R  A+  A     V
Sbjct: 146 AREAEVLEHAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRHAAVRLARERGWV 204


>gi|253575646|ref|ZP_04852982.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844984|gb|EES72996.1| regulatory protein LuxR [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 74

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                  F LT RE E    + + KT+ +IA  L IS  TV N+I+++M+K   K R+ A
Sbjct: 3   SSDRNSKFLLTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRAQA 62

Query: 237 IAYAVRNN 244
           +   ++  
Sbjct: 63  VVELIKLG 70


>gi|28900593|ref|NP_800248.1| fimbrial protein Z transcriptional regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308094539|ref|ZP_05889893.2| response regulator VbsA [Vibrio parahaemolyticus AN-5034]
 gi|308095461|ref|ZP_05906017.2| response regulator VbsA [Vibrio parahaemolyticus Peru-466]
 gi|308125907|ref|ZP_05778010.2| response regulator VbsA [Vibrio parahaemolyticus K5030]
 gi|308126425|ref|ZP_05910118.2| response regulator VbsA [Vibrio parahaemolyticus AQ4037]
 gi|28808973|dbj|BAC62081.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087144|gb|EFO36839.1| response regulator VbsA [Vibrio parahaemolyticus Peru-466]
 gi|308090858|gb|EFO40553.1| response regulator VbsA [Vibrio parahaemolyticus AN-5034]
 gi|308108873|gb|EFO46413.1| response regulator VbsA [Vibrio parahaemolyticus AQ4037]
 gi|308114372|gb|EFO51912.1| response regulator VbsA [Vibrio parahaemolyticus K5030]
          Length = 198

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 68/236 (28%), Gaps = 40/236 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++N ++  +       +  L     +   +       S    +               
Sbjct: 1   MNKMNCLIFDDHPLVCVAIKSLLKELGMTNEVFTATSAKSAFKTLKE------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  ++    FD  + +     +           +F     +   +     
Sbjct: 48  --SNIELLILDVNLADCDGFDFYKRIKSHGYE--------GKVIFFSAETSQMYSQMAFR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   + +   ++  +  +                    Y    FK       +  
Sbjct: 98  SGADGYVCKSENHDILKDAIEAVVKG-----------------YTFFKFKQVANEVREMP 140

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +L+ RE   + ++ +GK++ +IA +L IS  TV+ Y   ++ K   K        A
Sbjct: 141 QLSSRESAVMKYLLQGKSNRDIASVLSISDKTVSTYKRRVLDKFNVKNIVELTRVA 196


>gi|332828196|gb|EGK00908.1| hypothetical protein HMPREF9455_02697 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 216

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 31/237 (13%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +++    +     +  L + ++  + +   D        + A  +       +++ + L 
Sbjct: 4   VIIVDRQDITRVGIETLISDTNKASSVQVADSKGDLVKMLTATPDA-----VVILDYTLS 58

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D +++  + F   R +  SE+  Y   L+R                         
Sbjct: 59  DFGSVDELLNVGYRFSQSRWLLFSEELSYD-FLRRLIMSSESFS---------------- 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
               + ++  I +GL+ +F   R I      ++               V    D  LT  
Sbjct: 102 IVLKSCELDEINMGLLHIFRGERFICGRVTNQLLQ---------SQKPVIESLDHILTVT 152

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  I+ G+T+ EIA    +S +T+  +  +I RK        AI YA+R  +V
Sbjct: 153 EKEILKEIALGRTTKEIASNRNLSFHTIITHRKNIFRKLEVNNVHEAIKYAMRAGLV 209


>gi|322832815|ref|YP_004212842.1| LuxR family transcriptional regulator [Rahnella sp. Y9602]
 gi|321168016|gb|ADW73715.1| two component transcriptional regulator, LuxR family [Rahnella sp.
           Y9602]
          Length = 216

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 32/247 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN  I    I+L  +     + V  L      L  +                    G   
Sbjct: 1   MND-ITPSTILLIDDHPMLRNGVKQLIALDSRLKVIGEASN---------------GEQG 44

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L +        LD  +      D +  M  +       V          V +   + +
Sbjct: 45  VELAKQLDPDLILLDLNMPGMNGLDTLDSMRQTSLSGRIVVF--------SVSNHEDDVV 96

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           T      + Y     +   +   L        ++       +           +      
Sbjct: 97  TALKRGADGYLLKDMEPEDLLAALHNAAAGKMVLSEALTPVLA-------ASLRESRPSG 149

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +D + LT RE + +  I+EG  +  IA  L I+ +TV  ++  +++K   K+R  A  +
Sbjct: 150 DRDIQSLTPRERDIIKLIAEGLPNKMIARRLNITESTVKVHVKHLLKKMKLKSRVEAAVW 209

Query: 240 AVRNNIV 246
            +++N++
Sbjct: 210 VLQSNVL 216


>gi|297566766|ref|YP_003685738.1| LuxR family two component transcriptional regulator [Meiothermus
           silvanus DSM 9946]
 gi|296851215|gb|ADH64230.1| two component transcriptional regulator, LuxR family [Meiothermus
           silvanus DSM 9946]
          Length = 192

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 55/222 (24%), Gaps = 31/222 (13%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            L    D     + L   +             G     L      +   LD  +      
Sbjct: 2   RLLIADDHPLFRLGLRAALEREGFAVVGEASDGEETVKLGLKLRPEAILLDIKMPKRDGI 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
              R +                      FH             + Y S       +   L
Sbjct: 62  SACRALREGGY--------AGLIAMVTTFHEPALVHQAATAGADAYWSKEMPPDELAHRL 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             L                              +      ELT RE   L  + +G ++ 
Sbjct: 114 RRL-----------------------QKGLEPRLRAPDLPELTPREKTVLRLLVQGLSTK 150

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  LG+S +TV +++  +  K + + R  A+  A     +
Sbjct: 151 EMAQELGLSPDTVKDHLERLYGKLSARNRVEALERARGLGFL 192


>gi|121605583|ref|YP_982912.1| two component LuxR family transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594552|gb|ABM37991.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 37/242 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +   +I+L  +     S +  +         ++           + +             
Sbjct: 19  MPPTSILLIDDHALFRSGMRLVLLAGMANVEVLEAASLEQAVRTVTS------------- 65

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + +         + +  +                     +
Sbjct: 66  ---PPALVLLDIQLQGVNGLEGLGLF-----KQRWPGVPLVMLSS---AAEPETIRLALS 114

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + S      +I   +  +   G       +               +   +     
Sbjct: 115 RGAAAFVSKADTAEKIIKVIEQVLSGGLPDASAGMAH-------------NTSANATPRP 161

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT R+ E L  + EG ++  IA  L +S  TV  ++ +++      +RS  +  A R+ 
Sbjct: 162 RLTPRQCEVLDLLCEGLSNKVIARRLELSEFTVRGHVQAVLGLLGVSSRSQVMFAARRSG 221

Query: 245 IV 246
           ++
Sbjct: 222 LI 223


>gi|260464130|ref|ZP_05812324.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259030115|gb|EEW31397.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 257

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 70/227 (30%), Gaps = 16/227 (7%)

Query: 14  REDEQRTSFVSHLPTRSDLLAR-MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
             +E   + +   P   D  AR +  ++ +           E   A+          + +
Sbjct: 32  SREEMEIAIIDDRPLMCDCFARSLELIEPSFRIQRY--PTVEAFDAAS-------PEETE 82

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           ++ +++      +      LS              +      +  + +         Y  
Sbjct: 83  RVSTVLLCVMWSNSQADYHLSRIAHLKATRPSLGIVMLSDIESFDDIVKAVESGTRGYIP 142

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            +  +      + L+   G  +    L+  G                   D   T R++ 
Sbjct: 143 TSVSLQVAAKAIQLVAAGGTFVPPSVLFSSGQAVKD-----SQPAKQPQGDNVFTSRQMA 197

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  +  GK +  IA  L +  +TV  +I ++M+K   + R+  +AY
Sbjct: 198 VIEALRRGKANKVIAYELNMCESTVKVHIRNVMKKLRARNRTE-VAY 243


>gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 201

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 19/181 (10%)

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    ++ V      D+    A     +     +       P      +     A 
Sbjct: 40  VPSVLRHGPETAVIDVDLPDVDGFTAALRLRENTPGCRVLLLSRDP---NPGQVRRAFAV 96

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + SL     ++  G+  +   G                   +   +       +  
Sbjct: 97  HALGFMSLDVGPEQLADGVRRVAAGG----------------RAVDSELAVAALEAAENP 140

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ L   ++G  S+EIA  L +S  TV N+++ IM KT  + R  A+  A  +  
Sbjct: 141 LTRRELDVLRLAAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIASDSGW 200

Query: 246 V 246
           +
Sbjct: 201 L 201


>gi|34497856|ref|NP_902071.1| transcription regulator [Chromobacterium violaceum ATCC 12472]
 gi|34332798|gb|AAQ60073.2| capsula synthesis response regulator transcription regulator
           protein [Chromobacterium violaceum ATCC 12472]
          Length = 231

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q + ++L  +       +         ++       +      +      +     +   
Sbjct: 10  QAIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPLADVAVIDYA 69

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   L+ I +    F  +R + +S       V                       G
Sbjct: 70  LRPDDVDGLNLIRAMRIRFPWLRILVMSAYYTPATV------------------ALAMRG 111

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             + +      ++ + + +  L      +  D    +   +    ++      +     +
Sbjct: 112 GAHGFIGKEQGMSELILAIRRLAAGQTYLSEDMREAMPQQSGEA-SIPSDALPNLLDHPD 170

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           L+ RE E L     G +  EIAV    S  T++N   S ++K   ++ +  
Sbjct: 171 LSPREREVLRCCLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNEL 221


>gi|26988826|ref|NP_744251.1| LuxR family DNA-binding response regulator [Pseudomonas putida
           KT2440]
 gi|24983628|gb|AAN67715.1|AE016402_7 DNA-binding response regulator, LuxR family [Pseudomonas putida
           KT2440]
          Length = 207

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 27/194 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++R        LD  +      +++                    L        
Sbjct: 37  GVDAMQMIRESNPDLVILDISIPKLDGLEVLARFQSMALP--------LKVLVLTAQSPA 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D++ +   +  +           +                 
Sbjct: 89  LFAVRCMHSGAAGYVCKQEDLSELLSAIKAVLAGYNYFPSQAI---------------KN 133

Query: 177 DVHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +     D +L      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M K    T
Sbjct: 134 NQTTDSDLQLFRQVNDRELMVLQLFAQGRSNKEIAKGMFLSSKTVSTYKKRLMHKLQVNT 193

Query: 233 RSGAIAYAVRNNIV 246
               I  A RN +V
Sbjct: 194 LVDLIEMAKRNALV 207


>gi|325263734|ref|ZP_08130467.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
 gi|324030772|gb|EGB92054.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
          Length = 240

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ELT RE E +  +S G ++ +IA  L IS +TV  +I++I++K +   R+    Y
Sbjct: 182 ELTSREREIIHLVSIGMSNQQIAGQLQISEHTVKAHISNILKKLSLNNRTQLAIY 236


>gi|254718410|ref|ZP_05180221.1| Monoamine regulon transcriptional regulator [Brucella sp. 83/13]
 gi|306840178|ref|ZP_07472961.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
 gi|306404743|gb|EFM61039.1| Monoamine regulon transcriptional regulator [Brucella sp. NF 2653]
          Length = 245

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 80  AVMIHIGSKRLADPFFSGEMQSIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 140 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 188 VHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|212709567|ref|ZP_03317695.1| hypothetical protein PROVALCAL_00609 [Providencia alcalifaciens DSM
           30120]
 gi|212687905|gb|EEB47433.1| hypothetical protein PROVALCAL_00609 [Providencia alcalifaciens DSM
           30120]
          Length = 228

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V H     +           S +     +   + ++  + +II  D       +A + A 
Sbjct: 83  VRHNDTFIVKALDIGIFGILSTSIAEEELIEAIQVVNARQKIISPD-------IAQHLAL 135

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +          L+ RE+E +  I+ G    +IA  L +S  TVN Y   +  K    
Sbjct: 136 QRLNQREQLDIYELLSARELEIMLMITRGTPVKQIADTLSLSPKTVNTYRYRMFGKLNIS 195

Query: 232 TRSGAIAYAVRNNIV 246
           +       A+   ++
Sbjct: 196 SDVELTHIAISYGLI 210


>gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str.
           NATL2A]
 gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A]
          Length = 91

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 42/70 (60%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + ++       L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K R 
Sbjct: 3   TGEIANSSHMGLSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRV 62

Query: 235 GAIAYAVRNN 244
             + +A+ + 
Sbjct: 63  ALLNWAMDHG 72


>gi|27375369|ref|NP_766898.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348505|dbj|BAC45523.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 223

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 68/235 (28%), Gaps = 32/235 (13%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLF 69
            T      P      A +I +D        + +L   VG    L                
Sbjct: 1   MTRPNQAQPPTQPSSATVIIVDDDAGIRASLDSLFRSVGLETRLFGSPAELLGGSLPGGP 60

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      DL   +          ++      F      +P ++         
Sbjct: 61  GCIVLDVRLPGVSGLDLQSQLVRQGISY--PII------FMTGHGDIPMSVRAMKAGAVD 112

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + S  F    +   +     +      +   +  + A Y                 LT R
Sbjct: 113 FLSKPFRDQDMLDAVTAALERDAQHRAEAATKEDIRAQYG---------------TLTAR 157

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E E +  ++ G  + ++A ++G+S  TV  +  ++MRK   ++ +  +  A    
Sbjct: 158 EREVMGHVTAGLMNKQVAALIGLSEITVKIHRGNVMRKMGVRSLADLVRKAEALG 212


>gi|300715898|ref|YP_003740701.1| two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
 gi|299061734|emb|CAX58850.1| Two component transcriptional regulator, LuxR family [Erwinia
           billingiae Eb661]
          Length = 196

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 60/230 (26%), Gaps = 42/230 (18%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V ++L  +       +     R+     ++  +        + A                
Sbjct: 2   VTLLLIDDHPLVHVALEAALARAPFPFTLLAAEDENRAHALLAAQ--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +       L++ +          V+    +                A   
Sbjct: 47  PVDIVVLDIGLPDSDGLQLLKFI--RRHFPALPVIIYSAQE------ERLYQRLAEAAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y +    + ++   ++ +                         F            LT
Sbjct: 99  AGYVAKRQPMPQLLSAILAVLGGQ-------------------QAFPVSSESETTTHMLT 139

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +E + L  ++ G ++ +IA  L IS  TV+ +  +IM KT   +     
Sbjct: 140 SKEQQILALLARGLSNLQIAEQLNISNKTVSTHKKNIMDKTGASSVVELA 189


>gi|288920723|ref|ZP_06415025.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
 gi|288347920|gb|EFC82195.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EUN1f]
          Length = 214

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 62/240 (25%), Gaps = 33/240 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + +V+  + E     +  L             D   +    +               
Sbjct: 1   MTSLRVVIADDHELFRDGLRGLLADLGATVVAETADGNAALAAVL--------------- 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +      +    +           +   + L   +            
Sbjct: 46  -LHRPDVVLMDLRMPGLGGIEATARIGEQ--------VPGTSVLVLTMSEDTASLQAALQ 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y       A +   L  +     +I      ++               +      
Sbjct: 97  AGARGYLLKESSKADVARALEAVARGELVIGPGIADKV---------RHAVGGLSPRIFP 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT  E+  L  +++G  + +IA  L +S  TV N I++I+ K    TR+  I  A    
Sbjct: 148 QLTDAEIRVLDLVADGLANGQIAARLSLSEKTVRNRISTILTKLEAATRTEVILRARDAG 207


>gi|190574521|ref|YP_001972366.1| putative two component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190012443|emb|CAQ46071.1| putative two component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
          Length = 224

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 61/224 (27%), Gaps = 14/224 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-LFQEQKLDSIVSSD 81
           +  L    D       L       +    ++E       L    +       LD  +  +
Sbjct: 1   MPTLLIADDHPLFRAALHRAAEEAVADLQISEADSLDSVLEAIENQSIDLMLLDLHMPGN 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  +   +             +                     Y   +  +  ++
Sbjct: 61  HGLAGLATIRALQ--------PGLAIIIVSANEEPQVIRRAIDLGAAGYLPKSSGLNELQ 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L  +    R I       +  +A +             +   L+  + + L  ++EG 
Sbjct: 113 SALQSVLEGERWIPALLREPVARVAPF-----SRDADLAARLASLSAHQYKVLGLVAEGL 167

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +IA  LG+   TV  ++  IM +   + R+ AI       +
Sbjct: 168 LNKQIADRLGVQLRTVKAHMTRIMERLGVRNRAQAIRVLHEMGL 211


>gi|254193253|ref|ZP_04899688.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
 gi|169650007|gb|EDS82700.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           S13]
          Length = 319

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 73  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 132

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 133 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDD 191

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 192 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLVASA 251

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 252 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 311

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 312 FASARGLI 319


>gi|89900824|ref|YP_523295.1| two component LuxR family transcriptional regulator [Rhodoferax
           ferrireducens T118]
 gi|89345561|gb|ABD69764.1| two component transcriptional regulator, LuxR family [Rhodoferax
           ferrireducens T118]
          Length = 212

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 67/241 (27%), Gaps = 36/241 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +       +  +    +    ++                        L  
Sbjct: 1   MNRLKILVVDDHALVREGLHQVLQGLNEPVEVLEAPDCERAFE--------------LAA 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +      + ++ +                 L               A
Sbjct: 47  LHPELDLVLLDYDLPGMNGLEALKVLGQ--------AHPELPILMLSGMANPQMVRKALA 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + S     A +   + L+      +                ++            
Sbjct: 99  SGAAGFLSKNGHSADLLAAVCLVLAGEVYVP--------------MDLLTPGASPGKSAP 144

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++T R+ E L  + +G+++ EI+  L ++ +T  N++ +++R    K+R+  +  A R  
Sbjct: 145 QVTPRQAEVLALLLDGRSNKEISEALALTDDTTKNHVTALLRAFDVKSRTQLVLAASRQG 204

Query: 245 I 245
            
Sbjct: 205 Y 205


>gi|16263297|ref|NP_436090.1| Response regulator [Sinorhizobium meliloti 1021]
 gi|307304384|ref|ZP_07584135.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|307318091|ref|ZP_07597527.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|14523975|gb|AAK65502.1| Response regulator [Sinorhizobium meliloti 1021]
 gi|306896132|gb|EFN26882.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306902586|gb|EFN33180.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 227

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 56/194 (28%), Gaps = 4/194 (2%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
             TE +           L + + +   +       +    +L+     +  L+       
Sbjct: 29  RFTEIIETGSLDEAIERLSEREDVSLALFDLAMPGMQSVASLAAVRDVHPDLKVAVVSAS 88

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                  + ++      N Y         +   +  +      +            A   
Sbjct: 89  S---RRSDILSALTAGINGYVPKGLGATDLAEAVRAILNGSVYVPPSIAGRASPSEAETP 145

Query: 171 NMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                      +  E LT R+ E L  + +G ++ EIA  L +   TV  ++A++ R   
Sbjct: 146 APGGGVQNERHRTIEFLTPRQREVLQLLVQGFSNKEIARKLKLGEGTVKIHMAALFRSLR 205

Query: 230 TKTRSGAIAYAVRN 243
            + R  A A   R 
Sbjct: 206 VRNRQEAAAAGARL 219


>gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9313]
 gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9313]
          Length = 92

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 41/72 (56%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +  +       L+ RE+E +  +++G T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MATGKIPNSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +A+ + 
Sbjct: 61  RVALLNWAMDHG 72


>gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 198

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L     +    +         +LT RE++ L  +S+GK++ +I   L +S +TV  + 
Sbjct: 113 AALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHA 172

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + RK   + R+ A+A+  R  +V
Sbjct: 173 RRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|237794891|ref|YP_002862443.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4
           str. 657]
 gi|229263459|gb|ACQ54492.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4
           str. 657]
          Length = 865

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E +  + EG ++ +I   L IS  TV  ++ +I  K     R  A+
Sbjct: 803 LTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSKLQVSNRVQAV 854


>gi|254502437|ref|ZP_05114588.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222438508|gb|EEE45187.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 203

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 34/215 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  L    G         D               LD  +      ++++ 
Sbjct: 11  VDDDAAVRDALSVLFNMEGFIVETFTDGDAFVQSASKAVPACIMLDVHMPGRSGIEILKA 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +          +     +   P+       +       + +    F    +   +     
Sbjct: 71  LNAENYP--APIFIISGQGDIPL------AVEAIRNGAHDFIEKPFSAESVLERVR---- 118

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                          + A +        + +     LT RE+E L  I++G ++ E    
Sbjct: 119 -------------EGINAMKQRQSSDDGMQFEGVDLLTRRELEVLKEITDGASNKEAGRT 165

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LGIS  TV  + A IM K   +  +  +   + + 
Sbjct: 166 LGISPRTVEVHRARIMEKLGARNAAELVRIVLGHG 200


>gi|168182481|ref|ZP_02617145.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf]
 gi|182674457|gb|EDT86418.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf]
          Length = 865

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E +  + EG ++ +I   L IS  TV  ++ +I  K     R  A+
Sbjct: 803 LTEREKEVMEILFEGASNKQIGKRLNISLATVKTHMINIYSKLQVSNRVQAV 854


>gi|238024126|ref|YP_002908358.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237878791|gb|ACR31123.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae
           BGR1]
          Length = 520

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 11/157 (7%)

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-ARIRIGLMLL 147
                        +        PV                       D+  R R  + L+
Sbjct: 353 RSVEFRLRTEDGSVLDCLVSAEPVTIH----------GTECVLMAILDITDRKRSEMELV 402

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
                ++     +   L+         +         +LT RE +    + +G +  +IA
Sbjct: 403 SAIETVMQDASWFSRTLIEKLANVRRANAPDAGAHLSDLTARECDVFEQLCKGLSDKDIA 462

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             L +S  TV N++A+I  K    +R+ AI +A    
Sbjct: 463 KALELSPATVRNHVATIYAKLDVHSRAEAIVWAQTRG 499


>gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 395

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 38/76 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              A+   +         ELT RE E L  +  G ++ EIA  L I+  TV +++  I+R
Sbjct: 318 GQTADDDATTGARPPHRVELTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILR 377

Query: 227 KTATKTRSGAIAYAVR 242
           K     R+ AIA+A++
Sbjct: 378 KYGAVNRAQAIAWALQ 393


>gi|76819024|ref|YP_337392.1| LuxR family transcriptional regulator [Burkholderia pseudomallei
           1710b]
 gi|76583497|gb|ABA52971.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei
           1710b]
          Length = 236

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 55/236 (23%), Gaps = 26/236 (11%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW-PFDLVRCMALSE 94
           +     T        +L   +G + F     +  ++      +   + P           
Sbjct: 2   LASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFTPAAYRGDYVRRR 61

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDVA----------- 138
                  +        PV   L   +            + +  +  D             
Sbjct: 62  HHDVDPRMLGTRASSMPVVWDL-RQLAREHAARGCDALDGFLRVMHDDDMCSGVMYSMPV 120

Query: 139 -----RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDVHWGKDFELTGRE 190
                               I    L ++  L                       LT  E
Sbjct: 121 PGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASARERAAERLTPFE 180

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E L  I+EG +  EI   L  S + V+ ++  + ++     R     +A    ++
Sbjct: 181 RELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYFASARGLI 236


>gi|312195201|ref|YP_004015262.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311226537|gb|ADP79392.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 232

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 65/246 (26%), Gaps = 35/246 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   +  + I+L  +       +  +   +  L  +     +                + 
Sbjct: 1   MTRTLDPIRILLADDHALFRDGIRQILETAPDLVVVGEAGSSD---------------TV 45

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            +           LD  +        V  +          V+     L   ++       
Sbjct: 46  VVAALRTRPDVILLDVEMPGADVTVTVATLRR--------VVPEAHILVLTMYDGPQLVR 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    Y   +     +   +         +      E   LA              
Sbjct: 98  NLIGLGIRGYLLKSATRHELMSAIRGACHDDTRVSLVVSPESVTLA------------QV 145

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  L+ RE + L   +E  T+ +IA  L ++  TV  ++ +I  K    +R  AI  A
Sbjct: 146 RGEQPLSRRERDVLELAAEAMTNIQIASRLSLTEATVKRHMHNIFGKLHATSRIDAINKA 205

Query: 241 VRNNIV 246
           V   ++
Sbjct: 206 VAARLI 211


>gi|289643816|ref|ZP_06475923.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289506369|gb|EFD27361.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 115

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y         +   +  +     ++                       VH  +  
Sbjct: 2   AGAAGYVLKRARGTALVDAVRRVAAGRSLLDPAVTPR-------VLRRAGQEPVHDERLA 54

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT +E   L  I+EG T+ +IA  L ++  TV NY++S++ K   ++R+ A  +A + 
Sbjct: 55  TLTEQERRILALIAEGLTNRQIANRLFLAEKTVKNYVSSLLAKLGLESRTQAAVFATKL 113


>gi|116694085|ref|YP_728296.1| response regulator [Ralstonia eutropha H16]
 gi|113528584|emb|CAJ94931.1| response regulator, NarL-family [Ralstonia eutropha H16]
          Length = 209

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 64/238 (26%), Gaps = 32/238 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       + H   +   +  +I  D                G     LVR  
Sbjct: 2   TTILIVDDHPAMRLVLRHHLLQLLGVDEVIEADN---------------GQCAIELVRAR 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D+   +          +  +   L                   
Sbjct: 47  TPDLVLLDLDIPRSSGLDVAPRLRA--------IHPQVRILVVTALDPAVFISRSWQAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + S T D+  I   +  +     +            A                   L+
Sbjct: 99  QGFVSKTQDIKEILRAVEAVLAGYTVFPVLSRGGAPRQAMSADEEILR---------RLS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  L  ++ G +   I+  L IS  TV++Y A IM K    +    + +A R  +
Sbjct: 150 DKELVVLQMLARGMSYKAISASLFISNKTVSSYKARIMGKLQVSSLVELVDFARRCRL 207


>gi|16263910|ref|NP_436702.1| putative transcriptional regulator protein [Sinorhizobium meliloti
           1021]
 gi|307316983|ref|ZP_07596425.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|15140034|emb|CAC48562.1| probable transcriptional regulator [Sinorhizobium meliloti 1021]
 gi|306897605|gb|EFN28349.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 229

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 17/221 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P   D LA  +             +L+E +                 LD  +   
Sbjct: 18  VIDDHPLYCDALAATMESTFNTRRIRTATSLSEALQQLRMRF----SPDLIMLDLNLPDA 73

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                   +     D    V+          F +     +  A     +     D    +
Sbjct: 74  SGLSGFLKIKEKMPDI--PVI------VISAFTSKDVVQSVIAAGAAGFIPKDIDRHNFQ 125

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  ++     +          + A      +S +    K   L+ ++   L+ I EG 
Sbjct: 126 EAMQDIWNGKTYVPPGYA-----VPARATATDQSVETISRKIAHLSQQQTRILSLICEGM 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            +  IA  + ++  TV  +I +++R+     R+ A      
Sbjct: 181 PNKLIAYEMQLAEATVKAHITALLRRLGVHNRTQAAMLVRE 221


>gi|71275670|ref|ZP_00651955.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Dixon]
 gi|71897786|ref|ZP_00680012.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
 gi|170729510|ref|YP_001774943.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|71163561|gb|EAO13278.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Dixon]
 gi|71732341|gb|EAO34395.1| regulatory protein, LuxR:Response regulator receiver [Xylella
           fastidiosa Ann-1]
 gi|167964303|gb|ACA11313.1| response regulator receiver protein [Xylella fastidiosa M12]
          Length = 210

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +     + V  +   +   A+++     V+    + A             
Sbjct: 1   MSEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAVTLRSALQAY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 49  --PQTELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                      ++      K  
Sbjct: 99  FGAAGFIPKSSPPETITEVVAAVLDGGTWFPP-----------MLVECSEADAQLAVKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 RLTPQQFRVLLCLADGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAAVL 202


>gi|332881678|ref|ZP_08449326.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680317|gb|EGJ53266.1| hemerythrin HHE cation binding domain protein [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 326

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISE 199
                  +  + L   +                 +  +G+D     L+ RE E +  + +
Sbjct: 213 LFSHCHLEDTLFLEAVVRLEDERQEQAREENPQTEEQYGEDSANDALSDREKEVIVCVVK 272

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  L IS NTV  +  +I RK    + +G   YA+ N ++
Sbjct: 273 GMSNKEIAEQLYISVNTVMTHRRNISRKLQIHSPAGLTIYAIVNGLI 319


>gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema
           mirum DSM 43827]
          Length = 198

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L     +    +         +LT RE++ L  +S+GK++ +I   L +S +TV  + 
Sbjct: 113 AALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHA 172

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + RK   + R+ A+A+  R  +V
Sbjct: 173 RRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|242280104|ref|YP_002992233.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242122998|gb|ACS80694.1| transcriptional regulator, LuxR family [Desulfovibrio salexigens
           DSM 2638]
          Length = 406

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE +    + +GK   E+A  L I+ NT + Y + IM+K    + +  I YA+
Sbjct: 342 TPTHLSPREYQVFLLLIQGKRIKEVANELDITGNTASTYRSRIMKKLNISSITELIQYAM 401

Query: 242 RNNIV 246
           R  ++
Sbjct: 402 RQGLI 406


>gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC
           29413]
          Length = 87

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R  
Sbjct: 2   AGGESQTPVTLSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVA 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|227831855|ref|YP_002833562.1| putative transcriptional regulator [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183119|ref|ZP_06042540.1| putative transcriptional regulator [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227452871|gb|ACP31624.1| putative transcriptional regulator [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 217

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 60/232 (25%), Gaps = 24/232 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +DE   S +      ++ +  +           ++                  
Sbjct: 3   IRVFLVDDDELVRSTLRVYFQTTEDITVVGEATNGADCLAQLEEA--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L++ +  +            T L    F +    +       
Sbjct: 48  KPDLVLADIHMPHMDGITLLKHLNSAPNPP--------TFLAVTAFDSDDTMLKILRAGG 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   +      G ++    +  +       A   +       +  EL 
Sbjct: 100 AGYILKNQRPRSIIEAVRAAVEGGTVVAPAAMHRLVDYIGEPAT-PRDPVAAAIESHELH 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             E+  L  +  G ++ EIA     S + V  +++ ++      TR   +  
Sbjct: 159 DAEIAVLKLLLAGNSNSEIAAATHYSESAVKKHVSRLITIFGASTRLNLVTK 210


>gi|121608885|ref|YP_996692.1| response regulator receiver protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553525|gb|ABM57674.1| two component transcriptional regulator, LuxR family
           [Verminephrobacter eiseniae EF01-2]
          Length = 208

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R                         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAETFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLVERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    FD   +   +  +    R    D    +   A              
Sbjct: 96  NTMKKGALDFIQKPFDEPELVGLVERMLDHAREAFADYQQAVCREALL------------ 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 144 ---SKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|85711048|ref|ZP_01042108.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina
           baltica OS145]
 gi|85694961|gb|EAQ32899.1| Response regulator, LuxR family  (CheY, HTH domains) [Idiomarina
           baltica OS145]
          Length = 207

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 98  YYNVLQRPTELFCPVFHTLP-------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
               LQR   L       L        +     A     Y        + ++ +  L   
Sbjct: 61  IRPALQRLKRLAPSAHLVLFTKAKAVGDVRQVMAAGVRSYLPKDASAEQAKMAIRGLLNG 120

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R +  D             N+ +  +   G +  L+ R++E +  +++G ++ EIA IL
Sbjct: 121 DRYLPDD------------PNLNEPRNKSSGAESFLSPRQLEIMQLLAQGLSNKEIANIL 168

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GI+  T+  ++++I +      R+ A  +
Sbjct: 169 GITEGTIRVHLSAIFKAIKVSNRTEATLW 197


>gi|121594476|ref|YP_986372.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222110849|ref|YP_002553113.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120606556|gb|ABM42296.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221730293|gb|ACM33113.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 208

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 67/241 (27%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R               +         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAESFLARYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLVERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F+   +   +  +                  A      ++      
Sbjct: 96  NTMKKGALDFIQKPFNEEELLGLVERMLDH---------------AREAFADYQQAASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLSKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|27377870|ref|NP_769399.1| response regulator FixJ [Bradyrhizobium japonicum USDA 110]
 gi|120201|sp|P23221|FIXJ_BRAJA RecName: Full=Transcriptional regulatory protein fixJ
 gi|39524|emb|CAA40144.1| fixJ [Bradyrhizobium japonicum]
 gi|3021310|emb|CAA06275.1| FixJ protein [Bradyrhizobium japonicum]
 gi|27351016|dbj|BAC48024.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 205

 Score = 88.0 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 65/221 (29%), Gaps = 32/221 (14%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL---------DSIVSSDWPFD 85
            +  +D   +    +  L +  G    L      F +            D  +      +
Sbjct: 6   HIYVIDDDAAMRDSLNFLLDSAGFGVTLFDDAQAFLDALPGLSFGCVVSDVRMPGLDGIE 65

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L++ M   +      +L             +P  +         +    F+  R+   + 
Sbjct: 66  LLKRMKAQQSPF--PIL------IMTGHGDVPLAVEAMKLGAVDFLEKPFEDDRLTAMIE 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               +     +       + A               +   L+ RE + +  +  G ++  
Sbjct: 118 SAIRQAEPAAKSEAVAQDIAA---------------RVASLSPRERQVMEGLIAGLSNKL 162

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    IS  T+  Y A++M K    + S  +  A+R  ++
Sbjct: 163 IAREYDISPRTIEVYRANVMTKMQANSLSELVRLAMRAGML 203


>gi|269125868|ref|YP_003299238.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310826|gb|ACY97200.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 60/229 (26%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + L  ++  +  +     +       G       R        LD  
Sbjct: 2   IRVLLADDHLLIREALVLLLETEEGIEVVADVGR-----GDEAVEQARALRPDVAVLDID 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           ++          +     +               A     +       
Sbjct: 57  MPGMDGLAAAERLSRE--------VPSCRLIIVTAHGRPGNLRRAMAAGVRGFLGKDAPG 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           +R+   +  +    R I      +                    ++  LT RE++ L   
Sbjct: 109 SRLAEVIRQVAGGARYIDPQLAAD----------------ALAAEECPLTPRELDALRAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G    +IA  +G+S  TV NY+++ + K     R  A+  A     +
Sbjct: 153 ADGSPISKIARSMGLSEGTVRNYLSAAVTKLGADNRHAAVRAARDRGWI 201


>gi|330942268|gb|EGH44908.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 208

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L              +  
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALTCAVR---------EEG 137

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +  + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T   
Sbjct: 138 QTNELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVE 197

Query: 236 AIAYAVRNNIV 246
            I  A RN +V
Sbjct: 198 LIEMAKRNALV 208


>gi|320012366|gb|ADW07216.1| two component transcriptional regulator, LuxR family [Streptomyces
           flavogriseus ATCC 33331]
          Length = 225

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 14/211 (6%)

Query: 32  LLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
            +A  + +D     T+   A     G +   +V         +D  +      D  R + 
Sbjct: 20  RMALRLVIDGEPDLTVVAEA---ADGNAALRVVDEQRPDVVLMDVRMPGRDGLDTARELL 76

Query: 92  LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                           L    F +    +         +       +RI   +  +    
Sbjct: 77  ARPAPP--------RVLMLTTFDSSDLVLGALRVGALGFVLKDTPPSRILDAVRTVADGN 128

Query: 152 RIILRDRLWEIGLLAA---YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            ++       +   A          +  +    +   LT RE E    I++G  + +IA 
Sbjct: 129 PVLSPAATARVIAAATGPDSAHARGRHREAARRRLSVLTERERETARAIADGLGNPQIAE 188

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L I+  TV  +  S+  K A + R      
Sbjct: 189 RLRITVATVKAHTGSLFAKLAVENRVQIALL 219


>gi|126735985|ref|ZP_01751729.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           CCS2]
 gi|126714542|gb|EBA11409.1| transcriptional regulator, LuxR family protein [Roseobacter sp.
           CCS2]
          Length = 202

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 48/174 (27%), Gaps = 18/174 (10%)

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYCSLT 134
           P   +          +  V++        +         P          GM        
Sbjct: 37  PQGWIAHYTKQRFMLFDPVVKWAYGNVGTIRWFKLAEDDPKRIIAQAQTFGMRFGVTVSV 96

Query: 135 FD--VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
           FD      R                   E+ LL AY                 LT  E+E
Sbjct: 97  FDSSADAQRSFASFTRSDRDYTDL----EVKLLLAYLTRRHNETAPPTN----LTKAELE 148

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L  + +GK   EIA  L +S   V   + +   K   KT + A A A +  ++
Sbjct: 149 ALGMVKDGKRLKEIAFELSVSEGAVKQRLKNAKLKLGAKTGTQAAALANQYGLI 202


>gi|325964346|ref|YP_004242252.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470433|gb|ADX74118.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 242

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 61/221 (27%), Gaps = 18/221 (8%)

Query: 23  VSHLPTRSDLLA--RMIPLDCTVSWTMRMYAL-----TEYVGASHFLLVRWDLFQEQKLD 75
             HL       A  R+  +         +  L      E VG S             K D
Sbjct: 5   APHLNGGRSQAASIRVFVVTGHAMVRQGLRDLFETEGIEVVGESGSAAEAAYRIPALKPD 64

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             V  D   D        +       ++         +              + Y     
Sbjct: 65  VAVLDDMLPDGTGIEVCRDIRAVDPGIRCL---ILASYDDEQAVRGAVLAGASGYVLKRI 121

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
               +  G+ L+     +        +        ++ ++    W     L  RE E L 
Sbjct: 122 GGTELVDGIRLIAAGHSLFRPGVKDLVA------ESLGRTATAPWMDS--LAAREQEVLV 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            I+ G T+ E+   + +    V NY++S++ K   + R  A
Sbjct: 174 LIARGLTNREVGQQMNLPEPVVKNYVSSVLEKLGFRRRPAA 214


>gi|306818281|ref|ZP_07452010.1| nitrate/nitrite response regulator protein NarL [Mobiluncus
           mulieris ATCC 35239]
 gi|304648926|gb|EFM46222.1| nitrate/nitrite response regulator protein NarL [Mobiluncus
           mulieris ATCC 35239]
          Length = 257

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+   +D      +++L    D +  +   +                GA    ++   
Sbjct: 43  IRILFADDDRIIREGLANLLNHQDGITVVATAEN---------------GAQALKILATQ 87

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +   +  K   V+    E       +L +N+       
Sbjct: 88  PVDVALIDVDMPVLDGIQTAQRI-AKQYPKLAVVILTAFEHEESFARSLEQNV------- 139

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +      R+   L       R+        +       ++    Y     +   L 
Sbjct: 140 RGFLTKDIPPDRLAEQLKRAHAGERVFGSRPTEMLTSNFLAASSNAPEYQDFRRRVEALP 199

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               +    + E   +  IA  L +S NTV  Y++ +       +R+     A++   
Sbjct: 200 PYLRDVFDLVIEAYPNKTIARRLKLSENTVRTYVSELFVALDFTSRNQLTITALKAGY 257


>gi|298384248|ref|ZP_06993808.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|298262527|gb|EFI05391.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 41/142 (28%), Gaps = 18/142 (12%)

Query: 112 VFHTLPENITPPAGMDN-------RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
           V   L  +      +                    IR  L  +    R            
Sbjct: 79  VRWLLFSDELSEQFIRRLGVEKNVGMILKESSGEEIRSALKCMALGER-----------F 127

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L      +  S          LT  E + L  I+ GK+  EIA     S +T+  +  +I
Sbjct: 128 LCYQITELLISNSGRPEHHSVLTATETDILKLIARGKSVKEIAAERISSVHTIVTHKKNI 187

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK        A  YA+R  +V
Sbjct: 188 FRKLGVNNVYEATRYALRAGLV 209


>gi|229589739|ref|YP_002871858.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361605|emb|CAY48483.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 38/230 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +     R    A +              +  E              
Sbjct: 10  RIIVADDHPLFREGMLRTIERLIPTAIIEQAGNLDEVLALARSGAE-------------- 55

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD          ++  +            +R + +   +   L       A   +
Sbjct: 56  VDSLILDLRFPGITSMQVIGQLRNE--------FKRTSIIVVSMIDDLEIISQVIAQGAD 107

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     D   I   +M +     ++                       +       LT 
Sbjct: 108 GFIGKNVDPTGIAEAIMAIREGEVVV----------------KYNPENPLLDPSLSSLTA 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           R+ + L  I+ GKT+ EIA  LGIS  TV  +++++ +     TR+ A A
Sbjct: 152 RQKQVLGLIAAGKTNKEIARQLGISPFTVRIHVSTLFKTLGVPTRAAAAA 201


>gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus
           Nitrospira defluvii]
 gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus
           Nitrospira defluvii]
          Length = 265

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 18/177 (10%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE----------NITPPAGMDN 128
            S +P +  +             + R       V  +  E          ++    G+  
Sbjct: 63  HSTYPREFCQLYMGQGLA-ADPAVYRLITSGQSVTSSADEPAFSEPKDITSLKLDFGIKT 121

Query: 129 RYCSLTFDVARIRIGLMLL------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              +                       K R++L        L      +   + +     
Sbjct: 122 CLSAGVRGEHGTCSYFAFSNFDAKQTDKLRLLLDILTPHFHLSYMRCHS-AWNPERPAPP 180

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              L+ RE E L W++ GKT+ EI+VIL +S NTV  ++ ++ +K   + R  AIAY
Sbjct: 181 PTLLSKREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNVFQKIGVENRWSAIAY 237


>gi|281415592|ref|ZP_06247334.1| RNA polymerase sigma factor, sigma-70 family protein [Micrococcus
           luteus NCTC 2665]
          Length = 193

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 49/189 (25%), Gaps = 8/189 (4%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                 +   D ++                 ++          L   V     + +    
Sbjct: 4   AVRAVLDLAPDVVLLDVHLPGGAGGGGAEVAERVLARRPAQRFLALSVSDAAEDVVAVIR 63

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------GLLAAYQANMFKSY 176
                Y + T   A +    + +     +        +               A      
Sbjct: 64  AGARGYITKTASGAEVADAAVRVADGDAVFSPRLAGFVLDAFRGTAPASPPVPAAATSGA 123

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    L+ RE E +  I+ G T  E  V L IS  TV  +++S++RK     R   
Sbjct: 124 AAPDEDLDRLSAREREVMRLIARGYTYREAGVELFISDRTVETHVSSVLRKLQLSNRHEL 183

Query: 237 IAYAVRNNI 245
             +A R   
Sbjct: 184 TRWAARRGY 192


>gi|114706302|ref|ZP_01439204.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
 gi|114538163|gb|EAU41285.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506]
          Length = 205

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 39/232 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + ++L   +    S + HL  + +  A     +       R    ++       ++   
Sbjct: 6   PIRVLLAERNPLVVSALKHLIGKDERFAFTGTAESGAEIIRR----SDDPDFDIVVVGW- 60

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                      ++      L+  +   E        + P  +       +          
Sbjct: 61  ----------TLADMDGASLLIKLKEKE--------KPPRVVIFSAEEDIVILRQAVRLG 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +C    D   +   L+ +      I    L  +   A                  +L
Sbjct: 103 TYGFCYQFDDPEVLFDTLLAVANGRICIPYLDLTLVNDTAI----------------SKL 146

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           T RE E L+ ++ G T+ +IA   GIS+NTV  Y+ ++  K   + R+ A+A
Sbjct: 147 TVRERELLSMLALGWTNVQIAARTGISQNTVKYYLKNLYEKLDVQNRAMAVA 198


>gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC
           73102]
          Length = 87

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T+ R  
Sbjct: 2   AGGKSETPVSLSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRVA 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|110632453|ref|YP_672661.1| two component LuxR family transcriptional regulator [Mesorhizobium
           sp. BNC1]
 gi|110283437|gb|ABG61496.1| two component transcriptional regulator, LuxR family [Chelativorans
           sp. BNC1]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 60/211 (28%), Gaps = 18/211 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD-------LFQEQKLDSIVSSDWPFDLV 87
           R +  D    +   +       GA   +L   D       +  +  +D ++         
Sbjct: 5   RFVVADDHPLFRGALQQALSGFGADCEILEAEDFESAKAAIDGDLDIDLVLLDLAMPGAS 64

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               L         +                         + + S +  +  +R  +  +
Sbjct: 65  GLSGLVALRGLAPAVPIVIVS---AHDDPQTIRRAVELGASGFISKSARMEELRRAVQTV 121

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
              G                              +   LT ++   L  ++EG  + +IA
Sbjct: 122 LDGGIYTPGGI--------DLGEEGDAEISELIARLRTLTPQQTRVLAMLAEGLLNKQIA 173

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             L +S  T+  ++++I++K    +R+ A+ 
Sbjct: 174 YALNVSEATIKAHVSAILQKLRVDSRTQAVI 204


>gi|168702398|ref|ZP_02734675.1| two-component transcriptional regulator, LuxR family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 21/221 (9%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
                       L   ++ +  +  + E   G +     +        +++++       
Sbjct: 2   LIVDPHAVTREGLKAVINMSQGVRVVGEAGDGPTALAQAKELNPDLVVMEAVLPGLGGAY 61

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +           ++  + L                     Y   +     +   + 
Sbjct: 62  VAARLRA---------VKDQSVLVLTASEHAGMARLFLGMGVRGYVLKSSSTENVEEAVR 112

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   GR      +                          L  REV  L  ++ G ++ E
Sbjct: 113 TIAAGGRYFSPGIIG-----------HSSGEGPRGPSGMALVEREVTVLVLVARGYSNKE 161

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+V L  S  +V  +    MR+   ++R   +  A  +  +
Sbjct: 162 ISVKLMCSVKSVEIHKRRAMRRLELRSRVDLVHMAAAHGWL 202


>gi|149203381|ref|ZP_01880351.1| two component transcriptional regulator, LuxR [Roseovarius sp.
           TM1035]
 gi|149143214|gb|EDM31253.1| two component transcriptional regulator, LuxR [Roseovarius sp.
           TM1035]
          Length = 221

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 33/238 (13%)

Query: 12  LNREDEQRTS--FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +N ++E   S   V      S+ +A  +      +      AL      +   +      
Sbjct: 14  MNNQEEPTLSILVVDDHKLVSEAVANFLSSSSDFNV-----ALCNSFQEAESFIKENGPI 68

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD ++      D +  +                           +           
Sbjct: 69  DVVLLDLVMPDMKGMDSIASIIKLN----EPGAVVLFSGT----ANPHDLNAALELGCMG 120

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTG 188
               +  +  +   + L+                             +       E  T 
Sbjct: 121 LIPKSLPLKSLESAIRLVSTGE-----------------VFVRASQNEPSAKGSTESFTE 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R++  L+ I+EGKT+ EIA ++ +S  +V +Y+  I        R+ A   A +  I+
Sbjct: 164 RDLLVLSKIAEGKTNKEIAWMIQVSEVSVKSYVRKICMILGATNRASAAVRAKQLGII 221


>gi|148548844|ref|YP_001268946.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida F1]
 gi|148512902|gb|ABQ79762.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida F1]
 gi|313499778|gb|ADR61144.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 205

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 27/194 (13%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     ++R        LD  +      +++                    L        
Sbjct: 35  GVDAMQMIRESNPDLVILDISIPKLDGLEVLARFQSMALP--------LKVLVLTAQSPA 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         Y     D++ +   +  +           +                 
Sbjct: 87  LFAVRCMHSGAAGYVCKQEDLSELLSAIKAVLAGYNYFPSQAI---------------KN 131

Query: 177 DVHWGKDFEL----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           +     D +L      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M K    T
Sbjct: 132 NQTTDSDLQLFRQVNDRELMVLQLFAQGRSNKEIAKGMFLSSKTVSTYKKRLMHKLQVNT 191

Query: 233 RSGAIAYAVRNNIV 246
               I  A RN +V
Sbjct: 192 LVDLIEMAKRNALV 205


>gi|282859563|ref|ZP_06268668.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282587791|gb|EFB92991.1| hemerythrin HHE cation binding domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 318

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    +   L+ RE + +  + +G ++ EIA  L IS NTV  +  +I +K    + +G
Sbjct: 241 INKRPDRGDTLSDREKDVIVALVQGMSNKEIAEHLCISTNTVITHRRNIAKKLKIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|219683566|ref|YP_002469949.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621216|gb|ACL29373.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 224

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 65/238 (27%), Gaps = 22/238 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN + +  NI L   D    S++               +                    H
Sbjct: 1   MNPDSEPWNIALVDNDALVRSYLETYLGGLPEFNICWSMQSGRDAVEA---------YHH 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            +     +      D  +     F+L   +           +   +          P   
Sbjct: 52  SIACTNCVPDLIVTDLSMHGMSGFELCATIRFENDHTP---ILGCSSYMI-----EPYER 103

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                          ++A++  G+  L     ++  + +                     
Sbjct: 104 DAVNNGMQGLLLKN-ELAQLADGMRTLLSGQPLLKSNGMP--YETPQQAHERLLMQGKPA 160

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                ++  E   +   SEG ++  IA   G S +TV  YI+  MRK   K+R+ A+A
Sbjct: 161 --IMSMSPNEQAVMELCSEGLSTRTIAEETGDSESTVKTYISRAMRKLRAKSRAEAVA 216


>gi|78484550|ref|YP_390475.1| LuxR family transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78362836|gb|ABB40801.1| transcriptional regulator, LuxR family [Thiomicrospira crunogena
           XCL-2]
          Length = 205

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           T  E +         Y +     +RI   L  +      + ++ +  I  + +  A+   
Sbjct: 77  TAEEGMDWFKKGIKGYLNTFAQPSRIDQALNTILAGNIWLGQNVMQSI--IQSVSASQPL 134

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
             D        L+ RE+E + WI +GK++ EIA  + IS  TV  ++ S++ K   K R 
Sbjct: 135 QNDSWKE---LLSAREIETMEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDRL 191

Query: 235 GAIAY 239
             +  
Sbjct: 192 NLVIK 196


>gi|283784837|ref|YP_003364702.1| CsgAB operon transcriptional regulator [Citrobacter rodentium
           ICC168]
 gi|282948291|emb|CBG87871.1| probable CsgAB operon transcriptional regulator [Citrobacter
           rodentium ICC168]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N    +T D  R+  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYVTEDEERVVYGLQGILRGECYFSQK-------LASYLITHSGNYRYNGTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE E L  +  G ++ EIA  L IS NTV  ++ ++ +K A K R+ A+++A
Sbjct: 158 HREKEILNKLRIGASNIEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210


>gi|282858615|ref|ZP_06267777.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
 gi|282588619|gb|EFB93762.1| transcriptional regulator, LuxR family [Prevotella bivia
           JCVIHMP010]
          Length = 214

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 164 LLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
            L  +   M          + F+LT  E E L  I+ G T+ EIA     S +TVN +  
Sbjct: 124 FLCQHITEMLLEPASSLSFERFKLTKTETEILIDIALGMTTKEIAEKRFSSFHTVNTHRK 183

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           +I RK +    + A  YA+R+ ++
Sbjct: 184 NIFRKLSVNNANEATRYALRSGLI 207


>gi|300777620|ref|ZP_07087478.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300503130|gb|EFK34270.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 212

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 12/177 (6%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D    ++ D ++      +      +SE  K    L+            +   I      
Sbjct: 42  DQLHAEQFDLVILDINMPESKYLSMISELKKIQPDLKILVFSVYDNDIAIQYIIE----G 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + Y +   D   I   +  +F  G     D + ++              +        L
Sbjct: 98  ADGYINKLCDENNILEAVGSIFETGTYYSPDIVKKLV--------SSAKKEAPANPLESL 149

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + RE E    + +G  + EI+  L +  +TV+ Y   I +K   K     +    RN
Sbjct: 150 SEREKEIFDLLIQGYGNIEISNELNLHLSTVSTYKTRIYKKLNIKNTVDLVRLGDRN 206


>gi|307545406|ref|YP_003897885.1| LuxR family transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217430|emb|CBV42700.1| two component transcriptional regulator, LuxR family [Halomonas
           elongata DSM 2581]
          Length = 227

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 4/206 (1%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
           D  V         +  + A              +LD ++      D      L +  +  
Sbjct: 15  DAMVGAIAAALPGSRVLEADSLAAAVRQAESHDELDLLLLDLGLPDAQELAGLQQLREAL 74

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
             L                 +         Y   +     +   L  +      +  D L
Sbjct: 75  PGLPVAIISAE---QGRETVLEAIRLGAVGYIPKSTPRDDLIAALQQVLEGQMYLPADIL 131

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                     +    + D+      +LT ++++ L  ++ G ++ +IA  L I+  TV  
Sbjct: 132 RR-PPTPVASSRCEPAADLESSALAQLTAKQLQVLERMTCGDSNKQIARELNIAETTVKT 190

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNI 245
           ++++I+ K    +R  AI  A  +++
Sbjct: 191 HVSAILNKLGVNSRIQAILAAREHDL 216


>gi|171058317|ref|YP_001790666.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775762|gb|ACB33901.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 236

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 16/218 (7%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +      +                       +   + L    A +   +   V+  
Sbjct: 18  LVEVLRRALPDLRRIDAAADLAQAEALVNQRHYGLAVVDWSLPDGTAQALIARLARVIPP 77

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +   +               + Y   +   A +   L  +      +       +  
Sbjct: 78  TLVVVATIHDDDNHVFPALQAGASGYVLKSQPRAVVEAQLRRIAQGEPPLSPSIALRVLA 137

Query: 165 LAAYQANMFKSYD----------------VHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                 +   +                          LTGRE + L  + +G  + EI  
Sbjct: 138 HFRRSLDETAAGAQGATPSSAQRCGPASTPQADDSVRLTGREEDVLRMMGKGHKAAEIGR 197

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +L IS NTVN Y+  + RK    +R+ A   A R  ++
Sbjct: 198 LLAISVNTVNGYVREVYRKLGISSRAEAAIEATRRGLL 235


>gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
 gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein
           [Plesiocystis pacifica SIR-1]
          Length = 247

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 7/200 (3%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR----CMALSEKDKYYNVLQRPT 106
           A+ +  G +  L+      +E+     + +      V+     +     D    +     
Sbjct: 48  AVVDDPGQARVLIWDAHTIEEEDGLPRLPAAADEASVQGEPPALVALLPDGVDPLPLLAV 107

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            +   V           + +      +  D       +    P                 
Sbjct: 108 GVRALVARDAGTQRLRASVLAAELGLVVLDEDPSDALVASWSPGEEPEASPAPTPAP--- 164

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
           A       +      ++  LT RE E L  +++G ++  I   LGIS +TV  ++ +++ 
Sbjct: 165 AKPEPRVANKPASAPENNLLTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLD 224

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   ++R+ A+  A+R  ++
Sbjct: 225 KLDARSRTQAVVQAIRRGLL 244


>gi|159043020|ref|YP_001531814.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157910780|gb|ABV92213.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 239

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 13/210 (6%)

Query: 40  DCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY 99
           D   S    M+   +   A                D ++      D+             
Sbjct: 27  DALESALEMMFTGCDIRKAQTLNAALETAQDGFDPDLVMFDLKLPDVTGVSGFKTLRNRL 86

Query: 100 NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
              +           ++    +        +       AR+R  L  +   G  + +D  
Sbjct: 87  PDARFLVISSL---ASVELVQSLLNEGAAGFLPKDTSTARLRDALAKIAAGGTFVPKDFR 143

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
                 A  +     + +    K  ELT ++   +  I +GK + EIA  L ++  TV  
Sbjct: 144 K-----AETEGVEGPAAEFDHPKLAELTPQQQRIMRLICKGKPNKEIAYELSLAEATVKA 198

Query: 220 YIASIMRKTATKTRSGAI-----AYAVRNN 244
           +I +++R+   + R+ A+     A A +  
Sbjct: 199 HITALLRRLGARNRTEAVVVVEEAMAAQRG 228


>gi|289422732|ref|ZP_06424572.1| response regulator [Peptostreptococcus anaerobius 653-L]
 gi|289156911|gb|EFD05536.1| response regulator [Peptostreptococcus anaerobius 653-L]
          Length = 199

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I++  +       +  L    + +  +   +  V     +                 +
Sbjct: 1   MKILVAEDQSMLRDALCQLLKFQEEVEEVFQAENGVRAQYILE---------------NE 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +      D++             ++                         
Sbjct: 46  KIDVAILDVEMPEKTGLDVLEWSKGKGITTKIIIITTFKRSG--------YFQRAIKSGV 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      +  +   +  +    +    + +                 D+       LT
Sbjct: 98  DAYVLKERSITDLMKTIHSVLLGKKEYSPELM-----------------DIVINDHSPLT 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E E L  +++G ++ EIA I  +S  TV NYI+ I++K   + R+ A+  A   N +
Sbjct: 141 SQEEELLRKVAQGLSNKEIARISYLSDGTVRNYISIILQKLDAENRTDAVRIAQEKNWI 199


>gi|226329454|ref|ZP_03804972.1| hypothetical protein PROPEN_03359 [Proteus penneri ATCC 35198]
 gi|225202640|gb|EEG84994.1| hypothetical protein PROPEN_03359 [Proteus penneri ATCC 35198]
          Length = 225

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 61/222 (27%), Gaps = 31/222 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    ++  I+L  +     + V  L +    L  +                    G   
Sbjct: 9   MGSPTEKATILLIDDHPMLRNGVKQLLSLDTTLTVVGEAGD---------------GIQG 53

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          LD  +     F+ +  + L        V                + +
Sbjct: 54  VKLAEELDPDLILLDLNMPGMNGFETLDQLRLKSLSGRIVVFSVSNYS--------DDLV 105

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           T      + Y     +   +   L        ++       +           +      
Sbjct: 106 TALKRGADGYLLKDMEPEELLAALKQAAAGKMVVSPALTPILA-------ESLREDRSEG 158

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            +D E LT RE + L  I++G ++  IA  L I+ +TV  ++
Sbjct: 159 ERDIEQLTPRERDILKLIAQGLSNKMIARKLDITESTVKVHV 200


>gi|88797548|ref|ZP_01113137.1| two-component system, response regulator [Reinekea sp. MED297]
 gi|88779720|gb|EAR10906.1| two-component system, response regulator [Reinekea sp. MED297]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 115 TLPENITPPAG-MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF 173
             P  I          + S +     I   +  +           L           +  
Sbjct: 92  DDPSIIAKARACGAAGFISKSLAAESILHAVQSVLQGDEYWPDIDL-----------SPD 140

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
              +    +  ELT +++  L  + +G+ + +IA  L IS  TV  ++ +I RK     R
Sbjct: 141 SELEDIARRINELTDQQLRVLRHLQDGRLNKQIAYDLDISEATVKAHVTAIFRKLNVLNR 200

Query: 234 SGAIAYA 240
           + A+  A
Sbjct: 201 TQAVILA 207


>gi|254464296|ref|ZP_05077707.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
 gi|206685204|gb|EDZ45686.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium
           Y4I]
          Length = 251

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 28/241 (11%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDL 86
           D L  +     T              G    +      R +       D ++ S+ P + 
Sbjct: 5   DYLNFLCGAQSTEELWCEHVKQMAAFGFDRLIYGHTRFRTETSLGDPEDFVILSNHPNEY 64

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP-----PAG-----------MDNRY 130
           +             +L+   E        + E++       P             M   Y
Sbjct: 65  LNGFLKEGLYLSAPMLRWALENEGAGSWRIVEDMAATGTLTPEARKVHEFNQKLDMTAGY 124

Query: 131 CSLTFDV-ARIRIGLMLLF------PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 V  R +  + L            ++  +R  +I L+         +      K 
Sbjct: 125 TISFHSVSNRYKGAISLAAQPGMSQDDVDMLWAERGEDIVLMNNVAHLKILTLPYASPKR 184

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT R+ E L W+ +GKT+ +IA+++G++  T+  ++       A +T + A+  A  +
Sbjct: 185 S-LTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLAVETTAQAVLKAALH 243

Query: 244 N 244
           N
Sbjct: 244 N 244


>gi|285808481|gb|ADC36005.1| transcriptional regulator NarL [uncultured bacterium 259]
          Length = 228

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 1/135 (0%)

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
           RP  +F          +   A       +     + I   +  +  + +I    R+    
Sbjct: 73  RPLVIFLVAPDDDEWMLQAIAAGARGIVAKDAPPSDIIRAVTAV-REDQIWAPRRILGTA 131

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           LL   +A++ +        +  L+ RE E L  ++ G ++ E+A  LGI   TV  ++ +
Sbjct: 132 LLNHQRASLARDRHPEALLEQRLSIREREVLRNMAAGLSNKEVADRLGIRPATVKVHLMN 191

Query: 224 IMRKTATKTRSGAIA 238
           I +K   ++R    A
Sbjct: 192 IFQKLGMRSRGELAA 206


>gi|265983374|ref|ZP_06096109.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|264661966|gb|EEZ32227.1| two component transcriptional regulator [Brucella sp. 83/13]
          Length = 254

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 89  AVMIHIGSKRLADPFFSGEMQSIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 148

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 149 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 196

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 197 VHAICLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|265754224|ref|ZP_06089413.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|263234933|gb|EEZ20488.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 214

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 160 WEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             +  +    A   +  +     +   LT  E E L  ++ GKT+ EIA    +S  TV 
Sbjct: 120 QRLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVM 179

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I RK        A  YA+R  IV
Sbjct: 180 THRKNIFRKLEVNNVYEATKYALRAGIV 207


>gi|227823159|ref|YP_002827131.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227342160|gb|ACP26378.1| putative two component transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 40/236 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++   +    + +  L + +     +     +     ++                   
Sbjct: 12  RVLIAERNPLVIAALRGLFSENARFFIVDTARTSAELCEKL---------------ALVE 56

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                L   +      D++  +           +    +   P                N
Sbjct: 57  ADCVLLSWQLEDADAPDVLADIGRLGF---DPKIVLFADTNNPAVVN-----ETIRLGVN 108

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
             C    D   +   L  +      I    L +I                      +LT 
Sbjct: 109 GLCYHFEDPEILFATLTAVIKGRICIPYTALSKI----------------SNPPFQQLTA 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA-YAVRN 243
           RE E L  ++ G ++ +IA   GIS NTV  ++ ++  K   + R+ A+A YA   
Sbjct: 153 RETELLGMLANGWSNTQIASRTGISENTVKYHLKNLYDKLEVRNRAMAVAIYAKER 208


>gi|224026836|ref|ZP_03645202.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM
           18228]
 gi|224020072|gb|EEF78070.1| hypothetical protein BACCOPRO_03593 [Bacteroides coprophilus DSM
           18228]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
           +       L    A   K           LT  E E L  ++ GK++ +IA    +S  T
Sbjct: 120 EATEGRPYLTGKVAAWLKQSGKTTDAVSPLTTTEKEILRAMALGKSTKDIASERFLSIYT 179

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +  +I RK        AI +A+R+ +V
Sbjct: 180 VMTHRKNIFRKLGVNNAHEAIRHALRSGLV 209


>gi|120611131|ref|YP_970809.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|326317560|ref|YP_004235232.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|120589595|gb|ABM33035.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
 gi|323374396|gb|ADX46665.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 208

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 71/241 (29%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R               +         
Sbjct: 1   MSLTPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAESFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLLERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F+   +   +            DR+ +    +        S D   
Sbjct: 96  NTMKKGALDFIQKPFNEDELVSLV------------DRMLDRARESFAGHQQAASRDALL 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 144 SK---LTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|302528153|ref|ZP_07280495.1| predicted protein [Streptomyces sp. AA4]
 gi|302437048|gb|EFL08864.1| predicted protein [Streptomyces sp. AA4]
          Length = 202

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 59/229 (25%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +         + L  ++ L+  ++            G     L          LD  
Sbjct: 3   IRVALAEDQRVLREALVALLQLERDLTVVGVAER-----GEEAVQLAGNVKPDVLILDIG 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       +   +           ++                        N +       
Sbjct: 58  LPDVSGLTVASRVRARL-----PAIRILM---LTSLDKPGVVREALTLGVNGFLPKGVAA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    R++  D +                       +  LT RE   L   
Sbjct: 110 AELVEAIRDVHAGKRVVSPDLV----------------SSALAAGENPLTPRERSILQLA 153

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G    +IA  L ++  TV NYI  I+ K + +  + AI  A     +
Sbjct: 154 ATGTPPPQIAGQLHLAEGTVRNYITRIIAKLSARNATDAIRIAQHYGWL 202


>gi|240142442|ref|YP_002966952.1| hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens
           AM1]
 gi|240012386|gb|ACS43611.1| Hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens
           AM1]
          Length = 266

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 64/226 (28%), Gaps = 10/226 (4%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            DL  ++              +L E  GA+ + L       E      V +         
Sbjct: 41  DDLARQLDAAADRDRAHRAFGSLAEVSGAARWALAEMRRGGEGGFVFDVLASSSAGGDAP 100

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA---------RI 140
           +          VL R       +           A           D A           
Sbjct: 101 IRTVGPCAEDRVLARTWRARDAIELRPSSAGASIAAGLEALLGAVADAAIAVLPIDSPDP 160

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              ++ +   G       L     L        +       +  +L+ RE+E L   + G
Sbjct: 161 SRRVLGVAAAGEGADIRVLRRGFALYGAFFARLRKEANLPTR-VDLSRREIEVLQRCAHG 219

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +D IA  L +S +TV  +I     K   +  S A+A A+R  ++
Sbjct: 220 LKTDAIAAELEVSAHTVREHIDRARLKLDARNLSHAVALAMRAGLI 265


>gi|326441614|ref|ZP_08216348.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 260

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 63/233 (27%), Gaps = 8/233 (3%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       ++        +          +      AL +  G    L+ 
Sbjct: 1   MIRIRVLVVDDHRIFAESLAAALAAEPDVEVAAAGSGPAALRCLERALADGRGFDVMLVD 60

Query: 65  RWDLFQEQKLDSI---VSSDWPFDLVRCMAL--SEKDKYYNVLQRPTELFCPVFHTLPEN 119
                   +  ++   V+   P D    +    +      +V      +           
Sbjct: 61  ADLGAGGGRPQAVRAPVARAVPDDGDEGLVDGITLVAGVRSVHPAVRTVVLAEKDDPRRA 120

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
                     + +    + R+   +  +      +    L  +              +  
Sbjct: 121 ALALQAGACGWVAKDCSLQRLLAVIRGVLRDETHLPPALLTGVLRELTAARKHRTESERL 180

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                 LT RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 181 VES---LTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 230


>gi|149912276|ref|ZP_01900849.1| DNA-binding response regulator, LuxR family [Moritella sp. PE36]
 gi|149804646|gb|EDM64703.1| DNA-binding response regulator, LuxR family [Moritella sp. PE36]
          Length = 222

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 32/239 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN  +    I++  +                  A +I L      T    A  E V +  
Sbjct: 1   MNMHVMPEKIIIADDHPLFRQ------------ALLIALKEQFKTTQWFEA--ETVESIS 46

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L+         LD  +     FD +  +     D    V+         +        
Sbjct: 47  ECLIANADADLLLLDLNIPGAHGFDHLIRIRKQNPDV--PVVVISAYSDETIIA------ 98

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + +   +  VA I   +  +      +        G     + ++  + DV  
Sbjct: 99  KAMQHGASGFVPKSESVAVIISAISSVLAGQLWVP-------GTFEKPKQDVNATADVAI 151

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            K   LT +E   L   SEG  + +I   L ++  TV  + ++I RK   + R+ A   
Sbjct: 152 AK---LTAQEYRILMMFSEGLLNKQIGDKLCVAEATVKAHASAIFRKLNVRNRTQAAMM 207


>gi|119897794|ref|YP_933007.1| putative two-component response regulator [Azoarcus sp. BH72]
 gi|119670207|emb|CAL94120.1| putative two-component response regulator [Azoarcus sp. BH72]
          Length = 211

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 17/222 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D           +     +    E   GA    L R        LD  +     
Sbjct: 3   RLLLVDDHAVVRQGYRRLLEQQGNLVVAGEAATGADGLQLWRELQPDLAVLDLALPDIGG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +L+  +            +            +   +         Y + +     ++  
Sbjct: 63  LELLARIRQ-----RDPQARLLAFSM---HRDVLWAVQAVRAGALGYVTKSSPPEVLQQA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R    D       +A       +  +     D  L+ RE+E L  +  G   
Sbjct: 115 VREVAGGRRFFSPD-------IATELRAALREAEPPTAADC-LSPRELEVLRLLLAGTPV 166

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EIA  L +S  TV+N    I  +         +  A R  +
Sbjct: 167 AEIATALCLSPKTVHNTHYQIKARLGAGNDFELVRIARRLGL 208


>gi|74318588|ref|YP_316328.1| two component LuxR family transcriptional regulator [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058083|gb|AAZ98523.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 224

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 70/237 (29%), Gaps = 27/237 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q+  +L  +       V  + ++ +    +I      S   +                  
Sbjct: 10  QLKTLLADDHPLMREGVRQVLSQLEPPVEIIDAHDYPSLFAQ------------------ 51

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  V        V    +S+    +  +            +  +  +     
Sbjct: 52  -TALHADLDLAVVDLNMPGFVGVQGISQFRARFPDVPLV---VLSASESSHDIRSVLEAG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y       A +   L  +      I          +        ++ D    +   L
Sbjct: 108 ALGYIPKAASSATMLAALQQVLAGDIYIP----TCPPAVREDGPRGARTADFDALQHSGL 163

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T R++E    +++G  +  IA  L +S +TV  +IA+I R  +   R+ A+  A++ 
Sbjct: 164 TARQLEVARLLAQGCANKAIAGSLAMSESTVKVHIAAIFRALSVTNRTEAV-LAIQR 219


>gi|114046174|ref|YP_736724.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-7]
 gi|113887616|gb|ABI41667.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-7]
          Length = 223

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 66/232 (28%), Gaps = 28/232 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ + +  +     + ++    ++   A ++  +        +               
Sbjct: 1   MSQIKVAIADDHPLFRTALTQAVLKNVNTADVLEAENFQELISIVE-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +  +  F  +  +           +                      
Sbjct: 47  NNPDIELIFLDLHMPGNEGFTGLTLLQNHF-----PDIAVIMVSSD---DQPEIIRKAIN 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   +  + +I   +  +      +       +    A +            +  
Sbjct: 99  FGASAFIPKSASLTQISTAIATVLEGEVWLPEHTDINVDQQTAAEHQRLAK------QLA 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT ++   L  I+ G+ + +IA  L I   TV  ++++I+ K     R+ A
Sbjct: 153 QLTPQQYTVLASIANGRLNKQIAYDLDIKETTVKKHVSAILVKLEVYNRTQA 204


>gi|271969348|ref|YP_003343544.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512523|gb|ACZ90801.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 202

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 28/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R      +      L  ++ L+  +     + +     G S              LD  
Sbjct: 2   IRVLLAEDMNLIRGALVALLGLEPDMEVVAEVSS-----GDSAVSEALRHRPDVAVLDIN 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +                 L               +     +       
Sbjct: 57  MPGGIDGLAAAAVLAERLPD-------CRVLILTSLGRPEMLRRALSAEVRGFMLKDAPP 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    R++                          G+   L+ REVE L   
Sbjct: 110 AELAGAIRRVAGGERVMDPQLAAA----------------AITGRRNPLSPREVEVLRMA 153

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           SEG    EIA  L +++ TV NY+ +I+ K   + R  A+  A   + +
Sbjct: 154 SEGAEPAEIASRLHLTKGTVRNYLGAIVTKLDARNRLDAVRIATEADWL 202


>gi|256395013|ref|YP_003116577.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256361239|gb|ACU74736.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 441

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L  I+ G ++ EIA  L ++  TV  +++ ++ K   + R+ A+  A  + +
Sbjct: 367 LTPRETEVLLLIARGLSNPEIAAELVVTDETVKTHVSRVLTKLGLRDRTQAVVAAYESGL 426

Query: 246 V 246
           V
Sbjct: 427 V 427



 Score = 64.5 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/146 (8%), Positives = 31/146 (21%), Gaps = 8/146 (5%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R              A ++               T   G     L R        +D 
Sbjct: 5   PIRIVIADDHLVVRTGFAALLATQADFEVVG-----TAADGEETVRLCREAEPDVVLMDV 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +  R +      +    +Q P  L    F          +   + +      
Sbjct: 60  RMPGTDGIEATRRVVAEATHR---GVQGPRILILTTFDLDSYVYDALSAGASGFLLKDAT 116

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEI 162
             R+   + ++     ++       +
Sbjct: 117 AERLFEAVRVVAAGEALLAPAVTRRL 142


>gi|325980997|ref|YP_004293399.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325530516|gb|ADZ25237.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 241

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 14/221 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH-FLLVRWDLFQEQKLDSIVSSDWP 83
            +          + L         +  + E       F L          +D ++S +  
Sbjct: 10  RILVAESFELVRLGLRSLFENHNSIRLVAETSQLDDLFNLAEQHKPDIILMDLLLSGNNY 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            + +      +        +          ++   ++           S       +   
Sbjct: 70  AEHI-----IQLLHTCPQSKILAFSH---HNSEQTHLQTFRSGAVGVISKNNSTDLLLKA 121

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISE 199
           ++ +           + ++   A + ++       H          L+  E        +
Sbjct: 122 IVAIHTGHIWFD-RNITKLLWQAQFNSDPAAEIKPHTDNSTSQQPRLSDSERHIAHLACK 180

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           G ++ EI   L ++  TV N ++ I RK   K +      A
Sbjct: 181 GLSAKEIGAQLFVTEKTVRNQLSVIYRKIGVKKQIELCLKA 221


>gi|238025036|ref|YP_002909268.1| FOG PAS/PAC domain-containing protein [Burkholderia glumae BGR1]
 gi|237879701|gb|ACR32033.1| FOG: PAS/PAC domain protein [Burkholderia glumae BGR1]
          Length = 529

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 81/244 (33%), Gaps = 17/244 (6%)

Query: 7   QVNIVLNREDEQRTSFVSHLPT--RSDLLARMIPLDCTVSWTMRM--YALTEYVGASHFL 62
           Q  + L R+ E+R +    +     + L A    +       + M  +   E +G +   
Sbjct: 269 QAEMAL-RQSEERFAKAFRMAPVAMAMLTAERFEILDLNDAFVAMTGHEQGELLGRAADE 327

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +  W      +    +++    + V  M   +       L+        V          
Sbjct: 328 IGLWADPGALRE---IAAALEGEAVVRMRDVQVTTRDGDLRDCVVSADAV---------A 375

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
             G D    +L     R R  + L+      +     +   L+                +
Sbjct: 376 IHGQDCILMALLDISERKRTEMELIQAIETAMQDASWFSRTLIEKLANVRRAKAPDAGAQ 435

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             +LT RE +    +  G    EIA  LG++ NTV N++A+I  K    +R  AI +A  
Sbjct: 436 LADLTARERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVATIYTKLDVHSRGEAIVWARE 495

Query: 243 NNIV 246
             IV
Sbjct: 496 RGIV 499


>gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 416

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 71/239 (29%), Gaps = 8/239 (3%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +NI LN +   +  +   L                 S             +   LL    
Sbjct: 1   MNISLNDDARGQIEYPDDLSIVFIGKELFYSNQTLRSVQNEFGVRALRCESLDELLSDAR 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L    +   +V      DL+       K      L        P    L E+       D
Sbjct: 61  LTGPTERILVVDQMMLEDLLARPEEYRKIASAGCLAFAYRKQSPA-RFLFESWDRACFGD 119

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-- 185
             Y  +       R  L LL  +   +      ++           +       +  E  
Sbjct: 120 IGYLPMNVSPDVWRAILRLLMHEELHLPCFLADKMHAAPGSPNTPVEKQPATRTRSPEKL 179

Query: 186 -----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                LT RE + L  +S+GK++  IA  LGI+ +TV  ++ ++  K     R+ A  +
Sbjct: 180 LLYSQLTRREKQVLRLVSQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAAAHF 238


>gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4]
          Length = 74

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|149370505|ref|ZP_01890194.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149356056|gb|EDM44613.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 214

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 68/178 (38%), Gaps = 17/178 (9%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +       L + +  ++ +    V+         +   L E+        +
Sbjct: 52  IDLVITDVTMPEVDGIALNKWIKKTDLNIKTLVV--SMHNSPKIIDDLIESN------VD 103

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y             +  +    +   ++ + +I L           ++ +  K+ +LT 
Sbjct: 104 GYLQKNAQKEEFLKAIETILGGEKYFSKE-IKDIYL--------KNKFEKNKEKEIKLTK 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE ++ I+E  T+ EIA  L +S++T+ +Y  +++ K   +  +G   YA++   V
Sbjct: 155 REVEVISLIAEEFTTQEIADQLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGYV 212


>gi|91777209|ref|YP_552417.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91689869|gb|ABE33067.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 213

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 30/237 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +     +   +  +I  D                G +   + R   
Sbjct: 3   TILVIDDHPAFRMVIKMQLMQLLGVEEVIEADN---------------GQTAVEMARVHT 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   LD  +      D++  + L        +         P                +
Sbjct: 48  PELAILDLDIPRISGLDVIPRLRLVHP----PIRVMVLSGHDPAT----FAPRAMRSGVH 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + ++  I  G+  +     +         G++A               +   L+ 
Sbjct: 100 GFVGKSQEMKEIMRGVEAVLAGYTVF-PVTANGSGMVA------AVGAGGEEQRIGLLSD 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E+  L  +S+G ++  I   L IS  TV+++   IM+K A K+    I  A R  I
Sbjct: 153 KELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMQKLAVKSLVELIDLARRCRI 209


>gi|304404955|ref|ZP_07386615.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
 gi|304345834|gb|EFM11668.1| two component transcriptional regulator, LuxR family [Paenibacillus
           curdlanolyticus YK9]
          Length = 228

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 67/238 (28%), Gaps = 25/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D +    +SH  +    L+ +                          L    
Sbjct: 15  IRVMLVEDDPEWRRGLSHYLSAVADLSVVAETGDPEQVAS---------------LCAST 59

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD I+ SD P  L               +     +                   
Sbjct: 60  RPDVILLD-IMLSDVPAGL-------RLAAELPAITSARMIMLTSMEDGAFVSEALRAGA 111

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   +     I   +        +I      ++ L    +    +          ++T
Sbjct: 112 VNYMVKS-RFTDIPHAIRQAAADRSMIDASAA-KLVLEELRRLKKVERDYEVDRFKRQVT 169

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             EV+ L+ I EG +  +IA    +S  TV N++ +I+RK    T   A   A    +
Sbjct: 170 PAEVQVLSMIHEGYSQSQIADRSFLSLRTVKNHVGNILRKIGVGTSKEAAEKAKDMGL 227


>gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425]
          Length = 100

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 38/59 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE++ +  I+ G ++ +IA  L IS+ TV+N++++I+ KT T  R   + +AV+  
Sbjct: 12  LSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRWAVQWG 70


>gi|206564594|ref|YP_002235357.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|42795458|gb|AAS46239.1| CblR [Burkholderia cenocepacia BC7]
 gi|198040634|emb|CAR56620.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 238

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 63/248 (25%), Gaps = 31/248 (12%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E Q + +V+  +       ++   T    +        +      + A         
Sbjct: 1   MRPEHQPIRVVILDDHAVVQHGIASYLTEKIGIEVAASFAKSRDLIRWLEA--------- 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD  +      D +  + L               L      T     
Sbjct: 52  ------HHADVVLLDYTL-GPGEIDGLNLVKLVNTRFPD-----CRILMMSSSDTPATVS 99

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----------AYQA 170
                    +   + D+  +   + ++      I  +    +   A          A   
Sbjct: 100 MTMRAGALGFFGKSEDLGELAHAIRVVANGRPYISAELAARMESSATPDPRMADTKAAGG 159

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +   + +     D  L+ RE E L     G +  +IA     S  T++    S  RK   
Sbjct: 160 DGTLTPESGPSADLRLSPREHEVLRCFLAGMSVSDIASKFSRSPKTISAQKQSAFRKLGI 219

Query: 231 KTRSGAIA 238
           ++ +   A
Sbjct: 220 RSDAELFA 227


>gi|289625885|ref|ZP_06458839.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646217|ref|ZP_06477560.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867535|gb|EGH02244.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 220

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 67/240 (27%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +  + DL   +            +                 
Sbjct: 8   PLRVIVADDHPIFLIGLRVVLEQDDLATVVAEACNPDELLQVLAR--------------- 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAG 125
                   D ++  +   D +R +    +D     V+         +F ++ +       
Sbjct: 53  HPCDVLVTDFMMPVELQNDGLRLLQRIHRDFPALPVIVVTALSNAGLFQSMLDLN----- 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S       +   +  +      +       +     Y  +     +       +
Sbjct: 108 -VRGLLSKASLAGELPAAIRGVQRGEFFVADSVRRVLIEARQYGPDALLPAE-------K 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S G T  +IA  L  S+ TV+    + MRK      +    Y   + +
Sbjct: 160 LSPRELEVLRLLSAGHTVGQIAAQLNRSKQTVSAQKVAAMRKLGLANDAALFIYLQESGM 219


>gi|269976440|ref|ZP_06183425.1| two component LuxR family transcriptional regulator [Mobiluncus
           mulieris 28-1]
 gi|269935241|gb|EEZ91790.1| two component LuxR family transcriptional regulator [Mobiluncus
           mulieris 28-1]
          Length = 257

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+   +D      +++L    D +  +   +                GA    ++   
Sbjct: 43  IRILFADDDRIIREGLANLLNHQDGITVVATAEN---------------GAQALKILATQ 87

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +   +  K   V+    E       +L +N+       
Sbjct: 88  PVDVALIDVDMPVLDGIQTAQRI-AKQYPKLAVVILTAFEHEESFARSLEQNV------- 139

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +      R+   L       R+        +       ++    Y     +   L 
Sbjct: 140 RGFLTKDIPPDRLAEQLKRAHAGERVFGSRPTEMLTSNFLAASSNAPEYQDFRRRVEALP 199

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               +    + E   +  IA  L +S NTV  Y++ +       +R+     A++   
Sbjct: 200 PYLRDVFDLVIEAYPNKTIARRLKLSENTVRTYVSELFVALDFTSRNQLTITALKAGY 257


>gi|288941613|ref|YP_003443853.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288896985|gb|ADC62821.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 209

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 59/207 (28%), Gaps = 32/207 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D        +  + E  G          +       D      LD  +      DL   
Sbjct: 10  VDDDQGMRDSLTLILELAGYPVRSFPTPAAFLAAFSPDERGCLVLDQRMPDMTGLDLQSE 69

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +                 +F   F  +P  +    G    +        ++   +   F 
Sbjct: 70  LLERG--------ALLPIIFLSAFGDVPTTVRAIQGGAIDFLEKPASTEQLLQRIEDAFA 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           + R    +   E                    +  +LT RE E LT  + G T+ +IA  
Sbjct: 122 EDRRRREEAATEY---------------DIRERFRQLTPREHEVLTLTTRGLTNKDIARQ 166

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGA 236
           LGIS  TV N+ A +M K      +  
Sbjct: 167 LGISPRTVENHRARMMEKMGAGNLAEL 193


>gi|254389987|ref|ZP_05005209.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813922|ref|ZP_06772565.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197703696|gb|EDY49508.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326521|gb|EFG08164.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 201

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 60/225 (26%), Gaps = 25/225 (11%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSD 81
           +  +    D       L   +S    +  + E   G     + R        LD  +   
Sbjct: 1   MVRVLLADDEHLIRGALAALLSLEDDLDVVAEAASGTEALAMARAHRPDVAVLDLQMPGA 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               +   +           L     +                     +   T    R+ 
Sbjct: 61  DGVSVATSLRGE--------LPHCRTMIVTSHGLPGHLKRALEAGVRGFVPKTLSAQRLA 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    R +  +                   D     D  LT RE E L   ++G 
Sbjct: 113 EIIRAVHAGSRYVDPELAA----------------DAISAGDSPLTAREAEVLALAADGA 156

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              EIA    +S+ TV NY++S + K   + R  A+  A     V
Sbjct: 157 PIAEIAERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRGWV 201


>gi|296130423|ref|YP_003637673.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
 gi|296022238|gb|ADG75474.1| two component transcriptional regulator, LuxR family [Cellulomonas
           flavigena DSM 20109]
          Length = 223

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 13/193 (6%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
               L R        LD+ +    P + +R +          V      +          
Sbjct: 38  ELLALARRIAPTVVLLDAHLPGAGPAEAIRRLRA--------VAPSAAVVLLAGPDDGEA 89

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGL-----MLLFPKGRIILRDRLWEIGLLAAYQANMF 173
                A     + +     A +           +                          
Sbjct: 90  LDRALALGARGFLAPDVGRAELAAVAAHVQASPVSSGPAAPALPHPASPLQETHAARADA 149

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                       LT RE+E L  +S G+++ +I   L +S +TV  +   + RK     R
Sbjct: 150 GVAPRQVDTGPVLTKREIEVLVGMSHGRSNAQIGQELFLSEDTVKTHARRLFRKLGASDR 209

Query: 234 SGAIAYAVRNNIV 246
           + A+A  +R  I+
Sbjct: 210 AQAVAIGLRRGII 222


>gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
 gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas
           auensis DSM 9187]
          Length = 298

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           +  L        +  +    ++  LT RE + L W+S GKT+ EIA IL +S  TVN ++
Sbjct: 215 LHALIRLVTPKKRGTEEDLQRELNLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNKHL 274

Query: 222 ASIMRKTATKTRSGAIAYAVRN 243
             I +K     R+ A + ++R 
Sbjct: 275 EQIYKKLNVDNRTAAASISLRL 296


>gi|254525287|ref|ZP_05137342.1| transcriptional regulator LuxR/uhpA family [Stenotrophomonas sp.
           SKA14]
 gi|219722878|gb|EED41403.1| transcriptional regulator LuxR/uhpA family [Stenotrophomonas sp.
           SKA14]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 72/235 (30%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + +  I++  +     S V     +S  LA++  +                  A    L 
Sbjct: 1   MSEYTILIADDHPLLRSAVVQSLRQSLPLAQVREVASAE--------------ALAEALD 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F  +  + +        V+   +    P      +      
Sbjct: 47  AHPDVDLVLLDLTMPGAHGFSAL--LHVRGSHPDIPVV-ILSSNDHPRVIRRAQQF---- 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++  +   +  
Sbjct: 100 -GAAGFIPKSAPAETIGEAVQAVLDGGLWFPA-----------MAAERSEADALLASRLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAYTLGLAENTVKVHVTAILKKLECHSRTQAAVL 202


>gi|170740380|ref|YP_001769035.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168194654|gb|ACA16601.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 244

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 22/223 (9%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +DE     +  +  RS     ++      +   ++               R +   
Sbjct: 29  LIADDDEFFRLAMVAILNRSLGFGEVVETGSLDAALDQLAQ-------------RANGIT 75

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               D  +        +  +          V+   +E    +               + Y
Sbjct: 76  LALFDLAMPGMEGPGSLSAVRECFPWVKVAVVSGSSERHKIL--------AALEVGVHGY 127

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGR 189
                  + +   + ++      +        G             +    G+  ELT R
Sbjct: 128 VPKGLGSSELTRAVGMILDGQIYVPPSLAVLDGPARPAAPRAAPDSESLRPGRTVELTPR 187

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           + + L  + EGK++ EIA  L +   TV  ++A+++R    + 
Sbjct: 188 QRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLRSLGVQN 230


>gi|254250192|ref|ZP_04943512.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
 gi|124876693|gb|EAY66683.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184]
          Length = 376

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 59/272 (21%), Gaps = 39/272 (14%)

Query: 14  REDEQRTSFVSHLPTRSDLLAR---------MIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           RE   +  +   +    D             +     T      + +L    G S F   
Sbjct: 105 RERPVQVVWCDDVKRGDDAQPHAPKLGVADTLAHAQSTAERNRIVTSLLHLTGFSTFAYF 164

Query: 65  RWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--- 120
             +  +E+     +   + P                           P+   L +     
Sbjct: 165 ALEFARERVESLYLHEAFTPATYRGDYVRHNHHDVDPRTLGARVCNMPIVWDLQQLRREH 224

Query: 121 --------------------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRD 157
                                   GM +                M           I   
Sbjct: 225 RERDDAPSVSPAALDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITPA 284

Query: 158 RLWEIGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
            + +   +                       LT  E E L  I+EG +  EI   L  S 
Sbjct: 285 TIEQALSIGLSVHKFASPQLISTSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTSA 344

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + V+ ++  + ++     R        +  ++
Sbjct: 345 HNVDYHLRKLRKRFGVANRIQLTYLTSKLELI 376


>gi|315181475|gb|ADT88388.1| response regulator VbsA [Vibrio furnissii NCTC 11218]
          Length = 204

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 28/211 (13%)

Query: 27  PTRSDLLARMIPLDCTVSW-TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
               D     + +   +         L E         +R        LD  +     F+
Sbjct: 12  LVLDDHPLVCMAMKQILDRNPRFTEVLVESDPFVGVKKLRQTQVDFLILDVNLVKLDGFE 71

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++R + L               LF     +   + T      + Y S + D++ ++  + 
Sbjct: 72  VLRRLKLQGFT--------GKTLFVSASESRLYSETAMRVGADGYISKSEDLSILQDAVE 123

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +                       + FK        D EL+ +E+    ++ +GK++ E
Sbjct: 124 CILNG-------------------YSFFKVTTDTKSMDVELSKQELAVFRFLVDGKSNKE 164

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           IA IL +S  T++ Y + I+ K    +    
Sbjct: 165 IAEILSLSPKTISTYKSRILDKYQVNSIVEL 195


>gi|311696074|gb|ADP98947.1| two component transcriptional regulator, LuxR family [marine
           bacterium HP15]
          Length = 257

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 23/232 (9%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +S +       + +I  D   S                      D 
Sbjct: 38  KILIADDHPLFREAISSVIASGFEGSEIIETDDLDSALDITRE--------------NDD 83

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      + +              +                 +        
Sbjct: 84  LDLILLDLNMPGMHGLNGL-----ITLRNEAPTIPVVIVSAE---EDKQVVLQAITYGAC 135

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + + +   A++   +  +      +  D +   G  +  +    +   +       LT 
Sbjct: 136 GFITKSSPRAQMTEAIQQILNGNVYLPSDIIRT-GKESNTRRGRNEDNPISPELLNSLTR 194

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           R++  L  +S+G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 195 RQLLVLERMSKGESNKQIAYNLNIAETTVKAHVSAILRKLGVHNRVQAILSA 246


>gi|312960109|ref|ZP_07774621.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311285603|gb|EFQ64172.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 210

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 59/190 (31%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA    + R +      LD  +      +++  +   +             L    +  +
Sbjct: 37  GADAMQIAREERPDLVILDLAMPKLGGLEVINRIKALDLP--------CRILVLTSYLAV 88

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
             +          + + T ++  ++  +  +                 L           
Sbjct: 89  FFSTRCMRAGAMGFVAKTGELDELQKAIRAIRSGYSCFPS--------LPTSSVRRDDLQ 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +        L+ RE+  L  ++ G  ++EIA  + +S  T++ Y   +  K    +    
Sbjct: 141 ETELQMIEGLSDRELTVLQMLALGLGNNEIAAQMLLSHKTISTYKTRLKEKLRMSSVVHL 200

Query: 237 IAYAVRNNIV 246
             +A RN+++
Sbjct: 201 SKFAQRNHLI 210


>gi|311103650|ref|YP_003976503.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans
           A8]
 gi|310758339|gb|ADP13788.1| bacterial regulatory protein, LuxR family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 212

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 64/237 (27%), Gaps = 32/237 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             ++L  +       +     ++     + P          +   T              
Sbjct: 2   TAVLLVDDHAMFREALVMALGQAMPGMTIHPAASGQEALDALDRQT-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   +D  +      +L++ +           +   +    P      +         
Sbjct: 48  AIQHVIMDFYLPDMAGAELLKRLRQRRAQLR---ILVLSASQDP-----EDMRRALEAGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + + +     +   L  +           +    LLA  Q                LT
Sbjct: 100 QGFLNKSASCQELAAALEAVS--EAQPAHRSVSSSALLAGGQDEAALLRA--------LT 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            R+ E L  + +G  + EI+  L ++  TV  ++++I+       R+ A   A R  
Sbjct: 150 PRQNEVLCLMCDGLRNKEISERLNMTEKTVKTHVSAILGTLGVLNRTQATLVARRGG 206


>gi|315498474|ref|YP_004087278.1| two component transcriptional regulator, luxr family [Asticcacaulis
           excentricus CB 48]
 gi|315416486|gb|ADU13127.1| two component transcriptional regulator, LuxR family [Asticcacaulis
           excentricus CB 48]
          Length = 240

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 68/245 (27%), Gaps = 36/245 (14%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   +   +I++  +       +     +    A ++      +    +   T       
Sbjct: 28  MPLPVSAPSILVADDHPLFRQALILAARKVRPDAHILEAGTLDAALEAVRQAT------- 80

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                    +   LD  +     F  V  +           +     L            
Sbjct: 81  -------NLKLVLLDLRMPGAEGFSGVALLHAE--------VPHVPVLVVSAAEAEKAAR 125

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +      + R++  +                E+  +AA  A+         
Sbjct: 126 EARRFGAVGFIGKDQPLPRMQEAISDALEGRISDTPPADPEVDTVAAKVAD--------- 176

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT  ++  L  +  G+ + +IA  L IS  TV  ++ +IMRK   + R+ A+  A
Sbjct: 177 -----LTPTQLRVLLGVLAGRLNKQIAYDLSISEATVKAHMTAIMRKLDVQNRTQAVLAA 231

Query: 241 VRNNI 245
               I
Sbjct: 232 RALGI 236


>gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822]
          Length = 90

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   ASSKFETPASLSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVE 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|89891521|ref|ZP_01203026.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
 gi|89516295|gb|EAS18957.1| DNA-binding response regulator, LuxR family [Flavobacteria
           bacterium BBFL7]
          Length = 208

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 66/236 (27%), Gaps = 34/236 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  + +     +  L      +  +           ++                + 
Sbjct: 2   IKLLIAEDHQSLIDGLILLFKEDSEIEVIGTAKDGKELLEKL---------------VFK 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L +     +             +   +F+             
Sbjct: 47  KPNVLLTDISMPRLNGVELCKKALTLQ--------PELKVIAFSMFNDEDAIKEMIKAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y   T  +  ++  ++  +   R                             K   L+
Sbjct: 99  YGYILKTSSLQEVKTAIIKAYRGERYFDAS-----------INIKEIGRTETSNKKTILS 147

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             E + L  I++GKTS EIA I   + +T+  +  +I++K   + +   + YA++ 
Sbjct: 148 PSETKILKLIAQGKTSSEIAEIRFTAVSTIIKHRKNIIQKLGLQGKGELLRYALQK 203


>gi|119384521|ref|YP_915577.1| two component LuxR family transcriptional regulator [Paracoccus
           denitrificans PD1222]
 gi|119374288|gb|ABL69881.1| two component transcriptional regulator, LuxR family [Paracoccus
           denitrificans PD1222]
          Length = 224

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 63/227 (27%), Gaps = 21/227 (9%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   V   P  ++    +               +     +  +   R        +D 
Sbjct: 11  PLRVLIVDDHPVVAEGWEWITRGRLDCEV------IAAATPSQGWRAWRRQAPDVIVVDL 64

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +  +      R +           +   T    P+               N        
Sbjct: 65  TM-GEARLAGARLIERLRAAGANQPILVFTMHRSPII-----ARRALQAGCNGIIMKDSP 118

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   L  +   G  +  D    I LL                    LT RE++ L  
Sbjct: 119 SDDICEALREVARGGDYVPADLARRIALL---------ERPGATPPRPRLTPRELDILRA 169

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           I+EG +  EIA    IS  TV+N   ++  K + ++ +  +  A+R+
Sbjct: 170 IAEGLSYREIAERANISYKTVSNVSQTLKDKLSAQSFADLVVKAIRH 216


>gi|326318896|ref|YP_004236568.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375732|gb|ADX48001.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 61/220 (27%), Gaps = 23/220 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E  GA     L+         +D  +     
Sbjct: 14  RLFLVDDHALVRDGLRARLGSLPWVAIVGEASGADEAEPLIARLAPGIVLMDVGMKDVSG 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            DL   +                 L   ++              + Y       + +   
Sbjct: 74  LDLAARLLAGSGAP--------RVLMLSMYDNPEYVQRALQVGASGYVLKDAPASELVAA 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   G  +       +                +      LT RE E L  +  G +S
Sbjct: 126 LEAVAAGGTFLSPAVSQRLF--------------RNQAPKPLLTPRESEILAALGRGASS 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  LG+S  TV  +  +I R+    + +  I YAV +
Sbjct: 172 KQIACDLGLSVRTVEAHRQNIRRRLELGSLAELIRYAVEH 211


>gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
 gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           protein [Clostridium cellulovorans 743B]
 gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Clostridium cellulovorans 743B]
          Length = 805

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               E+  +A Y  N  K          EL+ +E+E +  I+EG T+ EIA  L IS  T
Sbjct: 720 AVTSELKKMAIYYPNYIKEKHDFE----ELSKKELEVIRLIAEGCTNGEIAARLDISTAT 775

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           V  +IA++++K   + R  A+  A  N++
Sbjct: 776 VKFHIANLLKKLNAENRIMAVKIASENDL 804


>gi|330861759|emb|CBX71933.1| hypothetical protein YEW_AJ02000 [Yersinia enterocolitica W22703]
          Length = 205

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 32/213 (15%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFD 85
            +  +D        + AL   +G                         LD  +       
Sbjct: 4   HIYLIDDDEGVRAALSALLTTMGWEVNAFSNGQIFLDTFAITQPSCVLLDIRMPGKSGMT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +                 +       +        G    + +   D   +   + 
Sbjct: 64  ILEAIQERNS--------ALPVIIMTGHGNVELCRRAFKGGALEFLTKPIDADVLIETVS 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +              E  L A  Q   ++          +L+ RE E    I +G+TS +
Sbjct: 116 MAL---------EQHEQSLTAHKQRESYQQL------FNQLSAREREVAALIIQGETSKQ 160

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           IA  L +S  TV  + A+I  K    + +  I 
Sbjct: 161 IAHTLSLSPRTVEAHRANIFAKLEVNSLALLIH 193


>gi|330809309|ref|YP_004353771.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377417|gb|AEA68767.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 165

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   + +     D A I   +M +     ++                       +  
Sbjct: 47  QVMALGADGFIGKNIDPAGIADAIMAIREGEVVV----------------KYQAENAILD 90

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +LT R+ + L  I+ GKT+ EIA  LGIS  TV  +++S+++     TR+ A A
Sbjct: 91  DALSQLTARQRQVLGLIAAGKTNKEIARDLGISPFTVRIHVSSLLKSLGVPTRAAAAA 148


>gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 74

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + ELT RE E +  I++G ++ EI+  L IS  TV  YI  IM K   ++R    AY  +
Sbjct: 8   NSELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAAYYFQ 67

Query: 243 N 243
           N
Sbjct: 68  N 68


>gi|282879611|ref|ZP_06288342.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281306559|gb|EFA98588.1| hemerythrin HHE cation binding domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 318

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + SG
Sbjct: 241 LSQVPHSQEILSEREKEVIVSLVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPSG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN++
Sbjct: 301 LTIYAIVNNLI 311


>gi|226939138|ref|YP_002794209.1| Response regulator [Laribacter hongkongensis HLHK9]
 gi|226714062|gb|ACO73200.1| Response regulator [Laribacter hongkongensis HLHK9]
          Length = 225

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 57/223 (25%), Gaps = 35/223 (15%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW----------DLFQEQKLDSI 77
            +++ L     +D    +   +  L E  G S                        LD  
Sbjct: 5   LQTECLPVAHIVDDDEPFRQSLTFLLESSGWSTVEYDSAAAFLAADPPYPGAGCLILDIR 64

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +L + +                 LF      +   +         +    F  
Sbjct: 65  MPRMNGLELYQELVRRGSTF--------PVLFMTGHGDVELAVEAMKAGATDFLQKPFRE 116

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV-HWGKDFELTGREVECLTW 196
            ++   L      G                      +        +   LT RE E    
Sbjct: 117 QQLLTALESAHRHG----------------QMRQRLRDSRQQAQDRLDRLTPREYEIACL 160

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + G  +  IA  LGIS  TV+++  ++M KT     +  +  
Sbjct: 161 AAAGHPNKRIAAQLGISEKTVHSHRLNLMDKTGAGNLADLVRL 203


>gi|197106283|ref|YP_002131660.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
 gi|196479703|gb|ACG79231.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum
           HLK1]
          Length = 215

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 62/231 (26%), Gaps = 29/231 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +     + +S    R    AR++          R+                    
Sbjct: 4   VLLVDDHPLFRTALSTAVRRVRPDARIVEAPTLADAAARLR--------------DDPGI 49

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +     F  +  +                 +               +   + 
Sbjct: 50  SLVLLDLRMPDCEGFTGLLTLRAEHPAVP--------VVVVSASEDGETVRRALSFGASG 101

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +  +  +   L  +             +         +     D    +   LT  
Sbjct: 102 FIPKSASLETMSEALETVLAGEVWAPPVCTPDND-------DGTSERDGASERIASLTPA 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           ++  L  +  G+ + +IA  +G+S  TV  ++ +I RK     R+ A+  A
Sbjct: 155 QLRILVGLRRGRLNKQIAYEMGVSEATVKAHMTAIFRKLGVLNRTQAVIAA 205


>gi|153807885|ref|ZP_01960553.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
 gi|149129494|gb|EDM20708.1| hypothetical protein BACCAC_02171 [Bacteroides caccae ATCC 43185]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +           +D  
Sbjct: 98  MAFGVVMKDNSKEEIMTAIQCAGRKQRYICNHVSNLL------LSGAASPVAGTMTEDHL 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|159898419|ref|YP_001544666.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891458|gb|ABX04538.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 867

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 6/136 (4%)

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           P    L + I       ++      D       L+ L              +   A    
Sbjct: 735 PALVALKQAIAL--AEPHQLIRSLLDHGSAIQQLLQLASDHGFNSPLIKHALIEFAK--- 789

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
               S          L+ RE+E L  I+ G T  EI   L +S  TV  +  +I  K   
Sbjct: 790 -RQPSVQPQTHTLERLSERELEVLQQIATGLTDREIGERLYLSMYTVKVHARNIYAKLEV 848

Query: 231 KTRSGAIAYAVRNNIV 246
             R+ A+A A    ++
Sbjct: 849 SNRTQAVARARTLGLL 864


>gi|37528106|ref|NP_931451.1| hypothetical protein plu4274 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787543|emb|CAE16646.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                  +I  G+ LL  +  +        +  +           D+       LT +E 
Sbjct: 109 IFIRQHNQIIAGVSLL--RDTLFTPKDFNRLSAILPLI--ELAVRDLLPETPTILTAKEQ 164

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E +  I EG ++  IA IL IS +TV  ++ +I  KT    R+  +
Sbjct: 165 EIINLIREGSSNKRIAQILNISLSTVKTHLRNIFAKTKVTNRTELV 210


>gi|319785037|ref|YP_004144513.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170925|gb|ADV14463.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 224

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 13/215 (6%)

Query: 35  RMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           R+I  D    +   +           E   A+ F  V   L  +  +D  +       L 
Sbjct: 3   RIIIADDHGLYRRGLRLALMAGIPDLEIFEAACFDTVISLLEDQAPVDLAIIDLNMPGLS 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
                 +                    +  E +T  +   + Y   +     + + +  +
Sbjct: 63  G---QDDLRDVLPAHPDTRFAIVSGTDSRAEILTALSIGLHGYIVKSQTDEEVVLAVNEI 119

Query: 148 FPKGRI---ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +L  R  E   L +          +       LT R+ E L  ++EG ++ 
Sbjct: 120 LAGRIYVPALLSQRSKESVRLPSEAPTQMPHRTISVNNLGRLTSRQKEVLRLMAEGYSNK 179

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EIA  L I+  T   + A+++R+   + R+ A   
Sbjct: 180 EIARSLEIAEATTKIHAAAVLRELGARNRTEAAVL 214


>gi|307701764|ref|ZP_07638778.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307613022|gb|EFN92277.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 257

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+   +D      +++L    D +  +   +                GA    ++   
Sbjct: 43  IRILFADDDRIIREGLANLLNHQDGITVVATAEN---------------GAQALKILATQ 87

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +  ++  K   V+    E       +L +N+       
Sbjct: 88  PVDVALIDVDMPVLDGIQTAQRI-ATQYPKLAVVILTAFEHEESFARSLEQNV------- 139

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +      R+   L       R+        +       ++    Y     +   L 
Sbjct: 140 RGFLTKDIPPDRLAEQLKRAHAGERVFGSRPTEMLTSNFLAASSNAPEYQDFRRRVEALP 199

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               +    + E   +  IA  L +S NTV  Y++ +       +R+     A++   
Sbjct: 200 PYLRDVFDLVIEAYPNKTIARRLKLSENTVRTYVSELFVALDFTSRNQLTITALKAGY 257


>gi|170746838|ref|YP_001753098.1| two component LuxR family transcriptional regulator
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653360|gb|ACB22415.1| two component transcriptional regulator, LuxR family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 202

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 40/236 (16%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D      V  L        R+                    GA     ++    
Sbjct: 6   VHVVDDDPAMRDSVGFLLGTEGFDVRLYEA-----------------GADLLDGLKEPAG 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D  +      +L+R +  +              +       +P  +         
Sbjct: 49  GCVLTDIRMPGIDGLELLRRLRAAGH--------ALPVVMMTGHGDVPLAVEAMKLGACD 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    FD   +   L     +G              A       + +   +G    L+ R
Sbjct: 101 FIEKPFDDEALIQALRSALERGGA------------AGAVDPTLREFVRRFG---TLSER 145

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E + L  +  G TS EI   L IS  TV  Y A +M KT  ++    + ++V   +
Sbjct: 146 ERQVLNHLVAGGTSKEIGRTLDISPRTVEIYRAKLMAKTRAESLQELVRWSVLAGL 201


>gi|73537454|ref|YP_297821.1| LuxR response regulator receiver [Ralstonia eutropha JMP134]
 gi|72120791|gb|AAZ62977.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia
           eutropha JMP134]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 63/239 (26%), Gaps = 25/239 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+L  +    ++    L                        AL               
Sbjct: 3   LRILLADDHPLVSTAARDLLQTQAGWEVCGMATSATDLLCCAQAL--------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D +R ++   +      +   T +  P+        +      
Sbjct: 48  RPDVVITDYHMPGPGDSDGIRLISTLRRHYPAMAVIVLTMITNPMI-----LRSILKSRV 102

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +         + +   ++ +      + +  L  +      +++     +        ++
Sbjct: 103 HGLLLKDAPPSELVTAVVRIQRGFDYVGKSALEILT-----RSDPDSLIEPGQPVPQRMS 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE E +     G++  EIA I+  S  T++      M+K            A R  I+
Sbjct: 158 VRETEVIRLYLSGRSVSEIAGIMCRSVKTISRQKNCAMQKLGANNDRELFECAARQGIL 216


>gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila
           UNI-1]
          Length = 356

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 32/63 (50%)

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE E L  +++G T+ EIA  L IS NTV  ++ SI  K    TRS A
Sbjct: 288 GGKSDDLSSLTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRSAA 347

Query: 237 IAY 239
           +A 
Sbjct: 348 VAK 350


>gi|312960770|ref|ZP_07775275.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
 gi|311284428|gb|EFQ63004.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens WH6]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 64/230 (27%), Gaps = 38/230 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +     R    A +              +  E              
Sbjct: 10  RIIVADDHPLFREGMLRTLERLMPAAVIEQAGNLDEVLALARSGAE-------------- 55

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD           +  +            +R + +   +   L       A   +
Sbjct: 56  VDSLILDLRFPGITSTHAIGQLRNE--------FKRTSIIVVSMIDDLEIISQVIAQGAD 107

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +     D A I   +M +     +I                       V       LT 
Sbjct: 108 GFIGKNVDPAGIADAIMAIREGEVVI----------------KYNPENPVLDPSLSSLTA 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           R+ + L  I+ GKT+ EIA  L IS  TV  +++++++     TR+ A A
Sbjct: 152 RQKQVLGLIAAGKTNKEIAKQLDISPFTVRIHVSTLLKSLGVPTRAAAAA 201


>gi|298486655|ref|ZP_07004713.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158870|gb|EFH99932.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 212

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 39  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 90

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +                 LA       ++ 
Sbjct: 91  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQA------LACAVREDGQTN 144

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    
Sbjct: 145 ELELFKLVN--DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVEL 202

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 203 IEMAKRNALV 212


>gi|291439142|ref|ZP_06578532.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342037|gb|EFE68993.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 270

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 57/226 (25%), Gaps = 3/226 (1%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       ++        +          +      A  E       L+   
Sbjct: 14  RIRVLVVDDHRIFAESLAAALAAEPDVDVSAAGSGPAALRCLERAAAEGRRFDVLLVDAD 73

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +       V      +      +S      +   +   +                  
Sbjct: 74  LGGKVPGGRPAVPVQDGDEDGLVDGMSLVTGVRSAQPQVRIVVLAEKDDPRRAALALQAG 133

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + + +    + R+   +  +      +    L  +              +        L
Sbjct: 134 ASGWVAKDCSLNRLLTVIRGVLRDETHLPPALLTGVLRELTAARRHRTESERLVES---L 190

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           T RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 191 TPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 236


>gi|224825367|ref|ZP_03698472.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224602288|gb|EEG08466.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 67/224 (29%), Gaps = 30/224 (13%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
              V   P   + LA +I           M A+T           R        LD  + 
Sbjct: 12  VFIVDDDPAVRESLAMLIMA-------QGMRAVTFANAQEFVRDYREGDIGCMILDIRMP 64

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 L   +   E      ++      F      + +           + +   D +R
Sbjct: 65  QMSGMALQELLIQREITI--PIV------FITGHGDIEQCSRAFRAGAIDFLTKPIDTSR 116

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +                D L     L+  Q            +   ++GRE E L  +++
Sbjct: 117 LI---------------DSLRRGIRLSIQQHKHETETLEVMQRLSRISGREREVLEMVAD 161

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           G +S EIA  + +S  TV  + A++  K    + +  I + ++ 
Sbjct: 162 GLSSKEIARAMELSPRTVEAHRANLFSKLGVDSLADLIRFYLKA 205


>gi|157376272|ref|YP_001474872.1| two component LuxR family transcriptional regulator [Shewanella
           sediminis HAW-EB3]
 gi|157318646|gb|ABV37744.1| two component transcriptional regulator, LuxR family [Shewanella
           sediminis HAW-EB3]
          Length = 220

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +   A +   +  +    + +                      D    K   
Sbjct: 101 GAAGFIPKSTTAAMMLEAIQSVLAGKQWLPE----------GCSNFDAVEADSMSSKIMS 150

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+   L   ++G  + +IA  LG+S  T+  + ++I  K    TR+ A+ 
Sbjct: 151 LSPRQHRILMMFADGMLNKQIAYDLGLSEATIKAHASAIFLKLGVHTRTQAVI 203


>gi|46310121|gb|AAS87341.1| putative regulatory protein [uncultured gamma proteobacterium]
          Length = 233

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 13/222 (5%)

Query: 28  TRSDLLARMIPLDCTVSWT-MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
             ++L+  +             + A+   + A H     WD  + +    +  +     L
Sbjct: 12  RVAELVWLLAESQGRPDIRARSLQAVAALLEAEHVASFVWDQHEHRSTQPVAFNIDGHHL 71

Query: 87  VRCMAL-SEKDKYYNVLQRPTELFC--------PVFHTLPE-NITPPAGMDNRYCSLTFD 136
                     D    V+++  +            +  +    +   PA M++      FD
Sbjct: 72  QAYEQHFHRVDVVTPVMRKVRQAARVDCHVPRATLVASEFYNDFLRPADMEHGLNVFFFD 131

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             +    L +   +GR+   +   E  LL   +    K++     +   L+ RE E +  
Sbjct: 132 GNQDVADLRIWRGRGRVPFSE--REEQLLLTLEPYFLKAFCTVPKQRQALSLREAEVVRL 189

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ G +  E+A  LGIS  TV  ++ + M K   + R+    
Sbjct: 190 VAGGASDKEVARALGISFTTVRTHLKNAMAKLDCRNRTQLAR 231


>gi|330896102|gb|EGH28323.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 116

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M   +   +  +  I+  +  +                       ++             
Sbjct: 1   MVRGFIPKSSSLEVIQQAVRTVLDGDVWWPPQV--------NEVISVSDEAKAASAGLAS 52

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT ++   LT + EG  + +IA  L +S  T+  ++ +I RK   +TR+ A   
Sbjct: 53  LTPQQFRVLTMVCEGLLNKQIASELSVSEATIKAHVTAIFRKLGVRTRTQAALL 106


>gi|303234262|ref|ZP_07320907.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302494626|gb|EFL54387.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 208

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 53/173 (30%), Gaps = 19/173 (10%)

Query: 75  DSIVSSDWPFDLVRCMALSE-KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           D ++      D    +  +E   K    ++       P    +           + +   
Sbjct: 50  DLVIMDILMKDGSNGLDAAEKIKKLKPEIKIIAVTSMP---EVSWMNRAKEIGIDSFWYK 106

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
                 I   +        I   +                    +   K  ELT RE+E 
Sbjct: 107 EISKEEILEIIQRTLAGESIYPLET---------------PEVKLGMAKSTELTPREIEV 151

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G  +D+IA  LGI  NTV  +I  ++ KT   +R+     A     V
Sbjct: 152 LRLLTTGAGNDQIAEELGILLNTVKTHIQHMLDKTEFTSRTQLAIQARITGFV 204


>gi|254883648|ref|ZP_05256358.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775634|ref|ZP_06741143.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319642280|ref|ZP_07996939.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|254836441|gb|EET16750.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450576|gb|EFG19067.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317386136|gb|EFV67056.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               +  +      + +  +    K    LT  E E L  ++ GKT+ EIA    +S  T
Sbjct: 120 AKQHLQYMCTRAVWLLQHKEDKKDKLVSPLTVTEREILKLMALGKTTKEIAAERFLSVYT 179

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +  +I RK        A  YA+R  IV
Sbjct: 180 VMTHRKNIFRKLEVNNVHEATKYALRAGIV 209


>gi|237707990|ref|ZP_04538471.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237725262|ref|ZP_04555743.1| transcriptional regulator [Bacteroides sp. D4]
 gi|229436528|gb|EEO46605.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229457976|gb|EEO63697.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 216

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 160 WEIGLLAAYQANMFKSYDVHWG-KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
             +  +    A   +  +     +   LT  E E L  ++ GKT+ EIA    +S  TV 
Sbjct: 122 QRLQYICTRIAWQLQHKEEKKEKRGSSLTVTECEILKLMALGKTTKEIAAERFLSVYTVM 181

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I RK        A  YA+R  IV
Sbjct: 182 THRKNIFRKLEVNNVYEATKYALRAGIV 209


>gi|226306908|ref|YP_002766868.1| two-component response regulator DevR [Rhodococcus erythropolis
           PR4]
 gi|226186025|dbj|BAH34129.1| two-component response regulator DevR [Rhodococcus erythropolis
           PR4]
          Length = 215

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 29/234 (12%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + L  + E     +  L      L  +           R+ AL                 
Sbjct: 4   VFLVDDHEVVRRGLVELLEGDPGLRVVGEASNYAHAMARIPAL---------------KP 48

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +L R +           L     L    F      +       + 
Sbjct: 49  DVAVLDVRLPDGNGIELCRELLSK--------LPALRCLILTSFEDDQAMLDAILAGASG 100

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +  +     ++  D      L+A  + +         G   EL+ +
Sbjct: 101 YVVKDIKGLDLARAVRDVGAGKSLL--DNRAAAALMAKLRTDAA----DKNGPFEELSQQ 154

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E   L  + EG T+ +IA  + ++  TV NY++ ++ K   + R+ A   A + 
Sbjct: 155 ERVLLGLLGEGLTNRQIAARMFLAEKTVKNYVSRLLSKLGVERRTQAAILATKM 208


>gi|224540370|ref|ZP_03680909.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518021|gb|EEF87126.1| hypothetical protein BACCELL_05283 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 219

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---- 181
           M             I   L     K R            +  + +N+  S          
Sbjct: 98  MAFGVVLKDNSKEEILSALQCASRKER-----------FICNHVSNLLLSGSNASPVRHT 146

Query: 182 -KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            KD  LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA
Sbjct: 147 LKDDLLTPAERSVLKEIALGKTTKEIAAEKNLSFHTVNSHRKNIFRKLGVNNVHEATKYA 206

Query: 241 VRNNIV 246
           ++  IV
Sbjct: 207 MKAGIV 212


>gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
 gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein
           [Alteromonadales bacterium TW-7]
          Length = 218

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYD 177
                          T +   +  G+ LL        RD +   +  +  +  +      
Sbjct: 87  ANRALLSGIRGVFYTTDNADVLMKGIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLT 146

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +  +LT RE   ++ +S G  + EIA  L IS +TV  ++ S  RKT  + R   +
Sbjct: 147 EGDIEPVKLTKREKAIISLMSNGSKNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELL 206

Query: 238 AYAVRN 243
           ++A +N
Sbjct: 207 SWAQQN 212


>gi|77362110|ref|YP_341684.1| LuxR family CSG operon transcriptional regulator [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877021|emb|CAI89238.1| putative csg operon transcription regulator (LuxR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 4/120 (3%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI---GLLAAYQANMFKSYDVHWGKD 183
            N     +     +  GL+ +        R  L +     L+A    +           D
Sbjct: 99  VNGVFYKSTPSEEVFKGLVKINAGELWFTRMILSQAFSDILVATSSFSSLHEGIELKQDD 158

Query: 184 FE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ++ LT RE   +  I++G ++  IA  L IS +TV  ++ S  +KT+++ R     +A R
Sbjct: 159 YQHLTKRERSVIHLIAQGASNSVIADKLNISDHTVKTHLYSAFKKTSSRNRVELANWAQR 218


>gi|330958946|gb|EGH59206.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 208

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L              +  
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALTCAVR---------EDG 137

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +    + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  TKT   
Sbjct: 138 NPSELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTKTLVE 197

Query: 236 AIAYAVRNNIV 246
            I  A RN +V
Sbjct: 198 LIEMAKRNALV 208


>gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 319

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 23/219 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LAR+           +   + +    +   L       + +   +  
Sbjct: 114 VDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILAL-------DVQGKIVWK 166

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    DL+              L+         F  L     P       Y + +  +  
Sbjct: 167 TQKANDLLNQYL--------PELEGFEAGLKAWFSDLEHEKDPKKLTSCSYSTPSQQLQL 218

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +                + +  L+    +              +LT RE E + W+  
Sbjct: 219 LLLT--------PWQTETSVAKNYLIQIKTSTPALEIADILKYCPQLTQREAEVMHWLLL 270

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A
Sbjct: 271 GKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309


>gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 23/214 (10%)

Query: 36  MIPLDCTVSWTMRMYALTEY-----VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ ++        +  +        +GA +  L   +L  ++K D I+      +L    
Sbjct: 4   ILVIEDEPEMRRNLVTILRLEQYQPLGAENGRL-GLELAAKEKPDLILCDVMMPEL-DGY 61

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            + +  +     +    +F        +         + Y +     A +   ++  F +
Sbjct: 62  GVLKALRENAATESIPFIFLSAKGEKIDQRNGMNLGADDYLTKPVARAELLEAIVARFRR 121

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGK--DFELTGREVECLTWISEGKTSDEIAV 208
                                 FK             LT R  E L W+++GKT+ +IA 
Sbjct: 122 QE--------------QQARPEFKPNFSSHEPLLSLGLTPRAAETLLWVAQGKTNLDIAT 167

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           ILGIS +TV  ++  I  K   +TRS A   A+ 
Sbjct: 168 ILGISESTVKKHLLEIFDKLNIETRSAATLRALE 201


>gi|150004589|ref|YP_001299333.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254883067|ref|ZP_05255777.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294776747|ref|ZP_06742211.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|319643586|ref|ZP_07998206.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149933013|gb|ABR39711.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254835860|gb|EET16169.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294449402|gb|EFG17938.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510]
 gi|317384755|gb|EFV65714.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 214

 Score = 87.7 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212
             + +I  L  Y     K            + EL+ RE+E L  I++G  + EIA  L I
Sbjct: 116 SLIKDIHQLRQYGHQARKQAADKAMHIEKTEHELSVREIEVLILITKGLINKEIADKLNI 175

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 176 SLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209


>gi|332163534|ref|YP_004300111.1| two-component response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667764|gb|ADZ44408.1| two-component response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 201

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 32/213 (15%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFD 85
            +  +D        + AL   +G                         LD  +       
Sbjct: 4   HIYLIDDDEGVRAALSALLTTMGWEVNAFSNGQIFLDTFAITQPSCVLLDIRMPGKSGMT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +                 +       +        G    + +   D   +   + 
Sbjct: 64  ILEAIQERNS--------ALPVIIMTGHGNVELCRRAFKGGALEFLTKPIDADVLIETVS 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +              E  L A  Q   ++          +L+ RE E    I +G+TS +
Sbjct: 116 MAL---------EQHEQSLTAHKQRESYQQL------FNQLSAREREVAALIIQGETSKQ 160

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           IA  L +S  TV  + A+I  K    + +  I 
Sbjct: 161 IAHTLSLSPRTVEAHRANIFAKLEVNSLALLIH 193


>gi|302390092|ref|YP_003825913.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200720|gb|ADL08290.1| two component transcriptional regulator, LuxR family
           [Thermosediminibacter oceani DSM 16646]
          Length = 327

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 15/194 (7%)

Query: 52  LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCP 111
              Y G +        L +E   D I+      D     A          ++ P      
Sbjct: 142 FLNYAGEAKTACDAVPLLEEIHTDVILIGVNLKDDKEVDACKLIK-----VRHPNMSIVI 196

Query: 112 VFHTLPENITPPAGM--DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ 169
             +   + I  P      +     + D   +   +  +   G+ I    + E+       
Sbjct: 197 FCNIEEQEIAFPYIKDWADAILLKSCDKTDLIYAITKVVQGGKFIDTKIVKELL------ 250

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                + +V       LT +E +    ++ GKT+ EIA  L +S  TV NY++ I+RK  
Sbjct: 251 --AKPNSEVGKNPLNLLTAQEQKVFYALALGKTNKEIASELYLSPATVRNYVSKILRKLN 308

Query: 230 TKTRSGAIAYAVRN 243
              RS  ++YA++N
Sbjct: 309 LPNRSAVVSYAMKN 322


>gi|150003000|ref|YP_001297744.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|149931424|gb|ABR38122.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
          Length = 214

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               +  +      + +  +    K    LT  E E L  ++ GKT+ EIA    +S  T
Sbjct: 118 AKQHLQYMCTRAVWLLQHKEDKKDKLVSPLTVTEREILKLMALGKTTKEIAAERFLSVYT 177

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V  +  +I RK        A  YA+R  IV
Sbjct: 178 VMTHRKNIFRKLEVNNVHEATKYALRAGIV 207


>gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 92

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 42/72 (58%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             S D     D  L+ RE+E +  ++EG T+ EIA  L IS+ TV+N+++++  KT +K 
Sbjct: 1   MSSVDTTDPLDISLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKN 60

Query: 233 RSGAIAYAVRNN 244
           R   + +++ N 
Sbjct: 61  RVALLNWSMDNG 72


>gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166]
          Length = 194

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 12/177 (6%)

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L   +  ++   D  +      +  +    S  D+  +          P      E +
Sbjct: 15  VSLAGLEPPEQHDADLFLVDAGHSEAEQI--SSLIDQLDDHTPVALVNIVP---EQAEQL 69

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                +             +  G+ +L   G  + R       +L       ++      
Sbjct: 70  VEKHPVIRGVFYSHATREHLLEGIRVLLKGGDWLPR-------VLTERLLGQWRRMRQLA 122

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                LT RE E L+   +G ++ EIA  L +S +T+ ++I +++RK     R+ A 
Sbjct: 123 ESKTSLTLREREILSLAGKGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEAA 179


>gi|319939711|ref|ZP_08014069.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811129|gb|EFW07438.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 199

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 30/225 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                    D L +++ +   V    +        G     L++        LD  +   
Sbjct: 5   VAEDQSMLRDALCQLLEMQPDVEMVHQASN-----GQEALDLLQSQNIDVAILDVEMPKQ 59

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D++  + + +             +    F              + Y      +A + 
Sbjct: 60  TGLDVLEWVKVQQST--------VKVVIVTTFKRPGYFERAVKADVDAYVLKERSIADLM 111

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  +    +    + +                 +        L+ +E+  L   + G 
Sbjct: 112 KTIHTVLKGQKEYSPELM-----------------EAMMTSKNPLSNQEILVLQAAARGL 154

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S EIA  L +S  T+ NY++SI+ K   + R  A+  A  N  +
Sbjct: 155 SSKEIAQKLYLSNGTIRNYMSSILTKLTAENRLEAVRIAQENGWI 199


>gi|257867869|ref|ZP_05647522.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257874198|ref|ZP_05653851.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257876762|ref|ZP_05656415.1| regulatory protein [Enterococcus casseliflavus EC20]
 gi|257801952|gb|EEV30855.1| regulatory protein [Enterococcus casseliflavus EC30]
 gi|257808362|gb|EEV37184.1| regulatory protein [Enterococcus casseliflavus EC10]
 gi|257810928|gb|EEV39748.1| regulatory protein [Enterococcus casseliflavus EC20]
          Length = 207

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 64/236 (27%), Gaps = 32/236 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  +D   T+ +  +   ++ +  +    C                     L    
Sbjct: 2   ITVVIIDDDPFVTTSLQTILESTEEIQVLGIGHCAKD---------------AIALYEAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +         + +             +   L    F          +   
Sbjct: 47  RPDVLLTDIRMPEQTGIAAAKEILAK--------FPQAILLLLTTFKDQEYIREAFSIGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y     ++  I   +   +    +   + +                           +
Sbjct: 99  KGYLIK-QNLQAIIPSVKAAYNGQVVFGNEIVET--------FTQMMKNQPAIDNQASFS 149

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            RE+  +  ++ GK + EIA  L +S  T+ NYI+ ++ K   + R+    Y  ++
Sbjct: 150 ERELAIIKEVAAGKNNKEIADALYLSDGTIRNYISQLLEKLELRDRTQLAIYYYQH 205


>gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
 gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC
           43184]
          Length = 192

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 37/67 (55%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + EL+ RE + L  I +G T+ EIA  L IS NTV ++  +I  K   KT SG   Y
Sbjct: 119 SDNNKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFY 178

Query: 240 AVRNNIV 246
           A+ N I+
Sbjct: 179 AIMNGII 185


>gi|148555884|ref|YP_001263466.1| response regulator receiver protein [Sphingomonas wittichii RW1]
 gi|148501074|gb|ABQ69328.1| response regulator receiver protein [Sphingomonas wittichii RW1]
          Length = 208

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
             D  A    ++  +         +   G +    V         LD  +      +++ 
Sbjct: 9   VDDDDALRQSVEVLLDVAGGFVTRSFASGEAFLDAVPQMEAGCVLLDLNMPGLNGLEVLH 68

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            +   +         R   +       +   +         +    +D   +   L    
Sbjct: 69  RLQKLDN--------RFETILLTGQGDIGVAVEAMKSGAIDFIEKPYDNRMLLGAL---- 116

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
             G   + DR  E   +                    LT RE + L  + +GK +  IA 
Sbjct: 117 DNGFARIEDREKEASAI-----------QSARDGIDRLTPRERDVLLGLIDGKANKIIAY 165

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L IS  TV  Y A++M K   ++ + A+  A    +V
Sbjct: 166 ELDISPRTVEIYRANLMDKLGVRSVAEAVRIAFAAGLV 203


>gi|320457450|dbj|BAJ68071.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 243

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 3/176 (1%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           + R +       D ++       +    A  E  + +  +          +         
Sbjct: 39  IERLESAGGPLPDVVLMDVRMPVMDGITATREITRRWPAIHVL---ILTTYDEDDYAYGG 95

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + +       A ++  +  +     ++      +I      +    +        
Sbjct: 96  LDAGASGFLLKDASAAAVKDAIHAVANGDAVVTPRITRQILEHGMPRPTAGREQQKLRDS 155

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              L  R+ E  T I+EG T++EIA  L +   T+   I+ I+       R+    
Sbjct: 156 FAALPPRQREICTLIAEGMTNEEIARKLVLEPATIRRTISRILFTLQLHDRTQIAV 211


>gi|312143766|ref|YP_003995212.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
 gi|311904417|gb|ADQ14858.1| transcriptional regulator, LuxR family [Halanaerobium sp.
           'sapolanicus']
          Length = 255

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             G  + LT RE + L  I +G ++ EIA  L IS NTV  +I+ +  K    +R   I
Sbjct: 191 KSGNQYNLTDREKQVLKLIIQGMSNQEIAAELFISINTVKKHISHLFNKCKVSSRIELI 249


>gi|300691337|ref|YP_003752332.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum PSI07]
 gi|299078397|emb|CBJ51047.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum PSI07]
          Length = 210

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 39/235 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R            +                R + 
Sbjct: 14  TVFVVDDDEAMRDSLTWLLEGNGYTVRTYRSAEEFLVDDK----------------RGEG 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   +          ++      F      +P  ++       
Sbjct: 58  VGCLILDVRMQGMSGPELQDRLLAENSRM--PIV------FVTGHGDVPMAVSTMKKGAV 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +       R++ + R  +         +  +           LT 
Sbjct: 110 DFIEKPFDESELRELV------ERMLSKARTED---------SAAREQKAAKDLLSRLTT 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|253999066|ref|YP_003051129.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|253985745|gb|ACT50602.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4]
          Length = 348

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 80/241 (33%), Gaps = 4/241 (1%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             +  +  NR+    T  ++ L T  DL   +         T  ++      G+      
Sbjct: 88  QPRTTVHFNRQALHSTPGLADLNTGHDLSQALCTSVFLPDCTSFLFISLFRSGSHAHAFE 147

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D+  +Q L   + S W  +L+  +  +     +               ++    +  A
Sbjct: 148 AGDIRLKQWLTPHLYSCWRTNLLADIERTRLPNKWQGKASAYVDRRG---SIVYADSAFA 204

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              ++    ++   R+   L+ +     +        I L       + +          
Sbjct: 205 EFVSQAW-PSWRGGRLPHALVDMLVSNPVSSIQLPIGIYLNQQQAGGLTRLDIGRPSPLD 263

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E     ++  +  EIAV  G+S  TV +Y+  I  K A   ++  +    R+ 
Sbjct: 264 KLSRREREVARGFAQAHSYKEIAVETGLSPATVRHYLRGIYAKLAINDKAELVRLVTRHE 323

Query: 245 I 245
           +
Sbjct: 324 L 324


>gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6]
          Length = 267

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             LV     +         +R   L    +    E I       +       D+      
Sbjct: 98  PRLVDAWKGAHHLPIVLPARRDGVLGSGAWVAELERIAATRLAVHGC----HDIDGDANC 153

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL---------TGREVECL 194
           L LL  +G       L  + L+  +    +    +  G+  +L         T RE E L
Sbjct: 154 LFLLACQGDSPDPRELCLLRLVVPFLREAWVRSQMIGGRHDDLPAPHGHAVITVREQEIL 213

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            WI  GK++ EI  ILGIS  TV N++  ++ K     R+ A+  A+  +++
Sbjct: 214 KWIYLGKSNSEIGQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAIEAHLI 265


>gi|187929793|ref|YP_001900280.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|241663920|ref|YP_002982280.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|309781491|ref|ZP_07676227.1| response regulator vsrc transcription regulator protein [Ralstonia
           sp. 5_7_47FAA]
 gi|187726683|gb|ACD27848.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
 gi|240865947|gb|ACS63608.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
 gi|308919904|gb|EFP65565.1| response regulator vsrc transcription regulator protein [Ralstonia
           sp. 5_7_47FAA]
          Length = 221

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 12/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            TS +  L    D    +        +        +   A         + +  + D ++
Sbjct: 1   MTSSLRSLLVVDDHPLALSGTTT---FLAHALPEVQVHAAIGRRQALALVEEGVRPDVVL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDV 137
              W  D     A+ E        +             PE +          +     D 
Sbjct: 58  LDVWLSDCTGFDAMRELRGKLPEARFAFMSAE----NTPEIVAKAQALGAIGFIGKHADA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +F        +      +                  +  LT R+   L  +
Sbjct: 114 HAFSKAVAGIFGGDASFPSED----DMGGINGKGGASHGIPITPAELGLTPRQGSVLALL 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG  +  IA  LG++ NTV  ++++I+++   +TR   I+   R  +
Sbjct: 170 LEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMERFRL 217


>gi|91983635|gb|ABE68837.1| response regulator [Pseudomonas fluorescens]
          Length = 142

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 7/122 (5%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y +    +  +   +  +F   R I      ++ L +        
Sbjct: 27  EDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDS 86

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            +D        L+ RE++    I+       I+  L +S  TVN Y   I  K +  +  
Sbjct: 87  PFDS-------LSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSEV 139

Query: 235 GA 236
             
Sbjct: 140 EL 141


>gi|152964708|ref|YP_001360492.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
 gi|151359225|gb|ABS02228.1| two component transcriptional regulator, LuxR family [Kineococcus
           radiotolerans SRS30216]
          Length = 204

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 58/229 (25%), Gaps = 28/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
                   LP   + + RM+              +    G         +      +D  
Sbjct: 3   ATVLVCDDLPLAREAMRRMVAA-----VPGVTRVVGAASGEEALQRWPVERPSLVIMDVR 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +  R +                 L   +           A     Y       
Sbjct: 58  MPGIGGVEAARRLLARH--------PEANVLMATMAEDGDGVARAVASGARGYLVKDVSR 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   ++                  L                G+   LT RE + L  +
Sbjct: 110 EELATAVLQALQDVSRRRGGNRTRAVL---------------TGRAPVLTEREQQVLVGM 154

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S G+++ EI   L +S +TV  +   + RK     R+ A+A   R  +V
Sbjct: 155 SRGRSNAEIGRELFLSEDTVKTHARRLFRKLEAADRAQAVAVGFRWGLV 203


>gi|49477103|ref|YP_035372.1| two-component response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328659|gb|AAT59305.1| two-component response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 219

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D +A  +     +        +     A +   +    +    +D  + +    
Sbjct: 3   EVLIIDDHMAVGMGTKALIETEDICADVLFDS-AEYLSCITKKKYDVYLVDLFMPNLNGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ + +   + D    ++        P F+ L EN        +   S T    ++   +
Sbjct: 62  EVTKGI--LKHDPDAAIIIYTGFDIEPHFNLLLENN------ISGIISKTASKEQMITTI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                K  +I      ++  +  + A      +        LT RE E L ++ +G T+ 
Sbjct: 114 RCAKRKEVVIPLGLFRQLR-IQQFSAKSVLQSEKTNELPITLTQREREVLIFVQQGMTNK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IAV L +S+ ++   +  +  K    +R  A+  A    I+
Sbjct: 173 NIAVTLNLSQRSIEYTLTELFNKLRVSSRVEAVEKAKSLGIL 214


>gi|299536275|ref|ZP_07049588.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
 gi|298728261|gb|EFI68823.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis
           ZC1]
          Length = 243

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           E+T RE E L ++ +G  + EIA  L +S NT+  ++ ++ RK     R+  +A  ++
Sbjct: 181 EMTDREREVLKFVFKGLKNIEIAKQLFVSENTIKKHLQNLYRKFQVTNRTQLLAKCLK 238


>gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver
           domain-containing protein and an HTH DNA-binding
           domain-containing protein [Saccharomonospora viridis DSM
           43017]
 gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein
           and an HTH DNA-binding domain protein [Saccharomonospora
           viridis DSM 43017]
          Length = 198

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L     +    +         +LT RE++ L  +S+GK++ +I   L +S +TV  + 
Sbjct: 113 AALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHA 172

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + RK   + R+ A+A+  R  +V
Sbjct: 173 RRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|134280658|ref|ZP_01767368.1| Rhs1 protein [Burkholderia pseudomallei 305]
 gi|167725877|ref|ZP_02409113.1| regulatory protein, LuxR:Response regulator receiver [Burkholderia
           pseudomallei DM98]
 gi|167905037|ref|ZP_02492242.1| regulatory protein, LuxR:Response regulator receiver [Burkholderia
           pseudomallei NCTC 13177]
 gi|134247680|gb|EBA47764.1| Rhs1 protein [Burkholderia pseudomallei 305]
          Length = 188

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 15/188 (7%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
                +          D  +  D   D +     S   + Y   +    +   +      
Sbjct: 10  ELLAALNEHPCDVVISDYSMPDDNFGDGISLF--SYVQRRYPGTRL---IALTMISNPAI 64

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                +   +   S + +V  I   +   + KG  +      E  +   +          
Sbjct: 65  IQNLISHGISTVLSKSDEVGHIIAAVHASYAKGSYLSP--TMEAIVNNGH--------GK 114

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             G +  L+ RE+E +   + G + +EIA  L  S+ T+++  A+ MRK    +    + 
Sbjct: 115 TQGGEVSLSPREMEVVRLFTSGLSVNEIANRLKRSKQTISSQKANAMRKLGLNSDIDLLK 174

Query: 239 YAVRNNIV 246
           YA++  +V
Sbjct: 175 YALKVKLV 182


>gi|71277777|ref|YP_268662.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71143517|gb|AAZ23990.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 219

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 20/215 (9%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
                P   D +  +I +    S T      TE V ++   +   D      LD  +   
Sbjct: 6   VADDHPLFRDAIVNIIGIKYPGSTTYE----TEDVESTLAFVKDNDEIDLILLDLNMPGM 61

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
                +  + L  +     V+    E          + +   +     + + +     I 
Sbjct: 62  SNLSGL--LDLRNQCPTTPVVIVSAEQ------EKQKILQTLSYGAVGFIAKSSSKDVIG 113

Query: 142 IGLMLLFPKGRIILRDRLW--EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             L  +F     +  D +       +   +                LT RE+  L  +++
Sbjct: 114 DALDSIFQGNVYLPSDIMRSPTNSTVTKNEFQALPESISL------LTRRELIVLQHLTK 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           G+ + +IA  L IS  TV ++++SI++K     R 
Sbjct: 168 GEANKQIAFNLHISETTVKSHVSSILKKLGASNRV 202


>gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 218

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMF 173
                              T +   +  G+ LL        RD +   +  +  +  +  
Sbjct: 83  NPELANRALLSGIRGVFYTTDNADVLMKGIRLLLEDQLWYRRDIMCNALNRMLQFNKDAL 142

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +  +LT RE   ++ +S G  + EIA  L IS +TV  ++ S  RKT  + R
Sbjct: 143 HKLTEGDIEPVKLTKREKAIISLMSNGSKNKEIAEELSISPHTVKTHLYSAFRKTKCRNR 202

Query: 234 SGAIAYAVRN 243
              +++A ++
Sbjct: 203 IELLSWAQQH 212


>gi|163803797|ref|ZP_02197650.1| regulatory protein CsgD [Vibrio sp. AND4]
 gi|159172395|gb|EDP57268.1| regulatory protein CsgD [Vibrio sp. AND4]
          Length = 213

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++         R  +  E   +            P  +   EN      +       +
Sbjct: 49  DLVLIDYDFMR--RLESREELPDFDLFAWPLMIHNVPSHN--VENKLLRWKLLKGILLQS 104

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
             V  I   +  +F  G  + R  L    L+  Y+ +          +   LT RE + L
Sbjct: 105 ASVDHISESVEYIFQGGLWLPRGYLE--ALINNYRHSNI----SMDSQHDSLTSRERQIL 158

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             ++ G ++ +IA  L +S +TV ++I  + +K     R+ AI     N 
Sbjct: 159 ELLAYGISNQQIASQLFLSESTVKSHIYKLYKKLDVHCRNDAIKVVRMNG 208


>gi|86146681|ref|ZP_01065002.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|218676406|ref|YP_002395225.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
 gi|85835528|gb|EAQ53665.1| transcriptional regulator, LuxR family protein [Vibrio sp. MED222]
 gi|218324674|emb|CAV26268.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32]
          Length = 227

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   V  +   L  +      + R       L++   +N              LT 
Sbjct: 108 GIIYQDAPVEHLTRCLKTVCDDDLWLPR------KLMSHILSNARSQTFKSQVILSTLTK 161

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           RE +    +  G T+ EI+  L IS +TV  ++ +I +K     R  AI  A
Sbjct: 162 REAQIFKRVIRGDTNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKA 213


>gi|328882053|emb|CCA55292.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 201

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 61/229 (26%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ ++  +    ++       G                LD  
Sbjct: 2   IRLLLAEDQGMMRGALALLLGMEHDMEVVAQVGR-----GDEIVDAALLARPDVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D    +     D           L    F                +      V
Sbjct: 57  LPGRSGLDAAADLRAQAPD--------CRVLILTTFGRPGYLRRAMEAGAAGFLVKDGPV 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +        +I                +   +          LT RE + L   
Sbjct: 109 EELAEAVRKALRGETVI----------------DPALAAAALGAGPNPLTARERDALAAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G T  +IA  L +S +TV NY++S + KT T+ R  A+  A +   +
Sbjct: 153 VDGATIADIAAALHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGWL 201


>gi|300690680|ref|YP_003751675.1| response regulator (vsrC), LuxR family [Ralstonia solanacearum
           PSI07]
 gi|299077740|emb|CBJ50378.1| putative response regulator (vsrC), LuxR family [Ralstonia
           solanacearum PSI07]
          Length = 221

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 12/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            TS +  L    D    +        +  +     +   A         + +  + D ++
Sbjct: 1   MTSSLHSLLVVDDHPLALSGTTT---FLAQALPEIQVHAAIGRRQALALIDEGIRPDVVL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDV 137
              W  D     A+ E        +             PE +          +     D 
Sbjct: 58  LDVWLSDCTGFDAMRELRGKLPEARFAFMSAE----NTPEIVAKAQALGAIGFIGKHADA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +F        +   ++G+      N           +  LT R+   L  +
Sbjct: 114 HAFSKAVAGIFGGASSFPSED--DLGMANGK--NGASHGIPITPAELGLTPRQGSVLALL 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG  +  IA  LG++ NTV  ++++I+++   +TR   I+   R  +
Sbjct: 170 LEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMERFRL 217


>gi|167897499|ref|ZP_02484901.1| transcriptional regulator, LuxR family protein [Burkholderia
           pseudomallei 7894]
          Length = 281

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 58/247 (23%), Gaps = 24/247 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 35  PRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 94

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----NRYCSLTFDVA 138
           P                  +        PV   L +     A       + +  +  D  
Sbjct: 95  PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDLRQLAREHAARGCDALDGFLRVMHDDD 154

Query: 139 ----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDVH 179
                                          I    L ++  L                 
Sbjct: 155 MCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLSLGLSVHRFAAPQLIASAR 214

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     +
Sbjct: 215 ERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTYF 274

Query: 240 AVRNNIV 246
           A    ++
Sbjct: 275 ASARGLI 281


>gi|167565359|ref|ZP_02358275.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis EO147]
          Length = 334

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 66/268 (24%), Gaps = 26/268 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q +++V      +          R  +   +     T        +L   +G + F  
Sbjct: 68  EAQTIDVVWCGHARRAADAEPRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAY 127

Query: 64  VRWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
              +  ++      +   + P                  +        PV   L   +  
Sbjct: 128 FAIEFSRDDAECLYLHEAFTPAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAR 186

Query: 123 PAG-----MDNRYCSLTFDVARIRIGLMLL----------------FPKGRIILRDRLWE 161
                     + +  +  D       +  +                      I    L +
Sbjct: 187 DHASRGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRMHAFASYTAPRRSRDWISSATLEQ 246

Query: 162 IGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +  L                       LT  E E L  I+EG +  EI   L  S + V+
Sbjct: 247 VLSLGLSVHRFAAPQLIASSRERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVD 306

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  + ++     R     +A    ++
Sbjct: 307 YHLRKLRKRFGVANRIQLTYFASARGLI 334


>gi|332291348|ref|YP_004429957.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332169434|gb|AEE18689.1| two component transcriptional regulator, LuxR family [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 209

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 72/237 (30%), Gaps = 33/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            IV+  +    +  +S L    D    +            +                   
Sbjct: 3   TIVIVDDHTLLSQAISGLVNSFDNFEVLYTCKNGQELLDNLR------------------ 44

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
           F+ ++ D I+       +    A ++  + Y  +           HT+ + I        
Sbjct: 45  FENKRPDIILMDVNMPIMDGIEATAQVKELYPTILILALSVEEDDHTILQMI---RAGAK 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y     +   +   L  L   G                  + +         KD  L  
Sbjct: 102 GYLLKDTEKKTLENALNELALNGYYHT-----------NTVSQLLVKSLNGNNKDA-LRD 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE+E +       T +EIA ++ +S  TV  Y  S+  K   K R+G + YA++N +
Sbjct: 150 REIEFIKHACTEMTYNEIADVMFLSPKTVQGYRDSVFSKLNLKNRTGLVIYALKNGL 206


>gi|308050738|ref|YP_003914304.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307632928|gb|ADN77230.1| two component transcriptional regulator, LuxR family [Ferrimonas
           balearica DSM 9799]
          Length = 215

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 60/229 (26%), Gaps = 35/229 (15%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           I++  +     + ++ L  R      +   D        +                    
Sbjct: 7   ILIADDHPLYRAALADLLRRYYPDCALAEADGAEPLNQALRT--------------GPEP 52

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +     F  +  +          V+    +                      
Sbjct: 53  DLLLLDLHIPGAKGFQTLLQIREQ--YPALPVVVISGQE------DDATVAQARQCGAAG 104

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   +  V  +   +  +    +   +                    D    +   L+ R
Sbjct: 105 FVPKSRPVEAMLDAVAAVLDGAQWWPQSA-------------EGGELDEMAVRIASLSPR 151

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +   L   +EG  + +IA  LG+S  TV  + ++I  K   +TR+ A+ 
Sbjct: 152 QHRILMLFAEGLLNKQIATRLGLSEATVKAHASAIFLKLGVRTRTQAVI 200


>gi|258647693|ref|ZP_05735162.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
 gi|260852526|gb|EEX72395.1| transcriptional regulator, LuxR family domain protein [Prevotella
           tannerae ATCC 51259]
          Length = 315

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              K+ EL+ RE + +  I +G ++ EIA  L IS NTV  +  +I RK    T +G   
Sbjct: 241 VSNKEEELSARERDVIISIVQGMSNKEIAEHLCISTNTVITHRRNIARKLQIHTPAGLTI 300

Query: 239 YAVRNNIV 246
           YA+ N +V
Sbjct: 301 YAIVNGLV 308


>gi|170077282|ref|YP_001733920.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002]
 gi|169884951|gb|ACA98664.1| two component sensor histidine kinase [Synechococcus sp. PCC 7002]
          Length = 363

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE + L  +++G    +IA  L IS +TV  ++   + K   K R  AI  A +  +
Sbjct: 303 LSQRERQVLALLTKGLRDRDIAQQLHISESTVKFHLNRTLSKLQAKNRYQAIYQATKQGL 362

Query: 246 V 246
           +
Sbjct: 363 I 363


>gi|127512897|ref|YP_001094094.1| two component LuxR family transcriptional regulator [Shewanella
           loihica PV-4]
 gi|126638192|gb|ABO23835.1| two component transcriptional regulator, LuxR family [Shewanella
           loihica PV-4]
          Length = 199

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 52/174 (29%), Gaps = 23/174 (13%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
           V   L     LD  +      +L++ +   +           + +      T+   +   
Sbjct: 41  VDLHLPGVAILDIQMPGVDGIELLQQIKQQDSP--------LSVIMLTGHGTISMAVQAL 92

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +     D  ++               +  + +  L++       +       + 
Sbjct: 93  QHGAIDFLEKPADGDKL---------------QALMKKASLMSLDAYQHKEKASSVAQRI 137

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
             LT RE + +  +  GK +  IA  L I++ T+  +   +M+K      +   
Sbjct: 138 ASLTPREQQVMHAVLAGKLNKVIAAELNIAQRTIELHRQKVMQKMQVNNVAELA 191


>gi|298244586|ref|ZP_06968392.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297552067|gb|EFH85932.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 523

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 49/86 (56%)

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           E  + +    ++ K   +   +  +LT RE+E +  +++G+ + +IA  L IS+ TV ++
Sbjct: 438 EALVASLQAGDVGKKAVLKRSQATDLTQREIEVVRLLTQGQNTPQIARTLSISKKTVEHH 497

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +A I  K     R+ A+AYAV+ N+V
Sbjct: 498 LAHIYTKFGVSCRTAAVAYAVQQNLV 523


>gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces
           himastatinicus ATCC 53653]
          Length = 178

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +         +        G L  +   M   +         LT RE E L  +
Sbjct: 76  EELVEAVRRASDGTGYVSP---GLSGALLRFTRAMLPRHLSAVPTHAPLTSRESEVLQLV 132

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            +G  + EIA  LG+S  TV  ++++++ K    +R+  IA
Sbjct: 133 RKGMANKEIARRLGLSEKTVKFHVSNVLAKAHVASRAQLIA 173


>gi|297561441|ref|YP_003680415.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845889|gb|ADH67909.1| two component transcriptional regulator, LuxR family [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 226

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 10/186 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +V         +D  +           +  +              L      + 
Sbjct: 41  GDEAVRVVAEHAPDVVLMDLRMPGTDGVAATERIRSAPGAP--------PVLVLTTLDSD 92

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +       + +         +  G++ +  +   +       +  LA    +     
Sbjct: 93  RALVRALRAGASGFLLKDAPPDELVEGVLAVHRRRPHLADAATRRLIGLAVGGGDDEAR- 151

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           D    +   L+ RE E    +S G ++ EIA  L +S + V   +  +M K     R   
Sbjct: 152 DQARERLSALSEREREVALAVSRGLSNTEIAEDLFMSVSNVKAVVGRVMAKLDAPNRV-L 210

Query: 237 IAYAVR 242
           +A AVR
Sbjct: 211 VANAVR 216


>gi|152981623|ref|YP_001352308.1| positive response regulator for colanic capsule biosynthesis
           [Janthinobacterium sp. Marseille]
 gi|151281700|gb|ABR90110.1| positive response regulator for colanic capsule biosynthesis
           [Janthinobacterium sp. Marseille]
          Length = 216

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +++  ++L  +       +  L  +      +  +  + +    M               
Sbjct: 1   MKKQTVILADDHPLILMGLRDLVEKDASFELLGAVSSSTALVSLMRDA------------ 48

Query: 65  RWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                     D  +  D    D +R +    +      +   T +  P+  +   +    
Sbjct: 49  ---EPDMVITDYSMPGDETYGDGIRMIKYLIRHFPNTKILTMTMMSNPMIISALYD---- 101

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                     + D A     L +L    +        E     +      K         
Sbjct: 102 -AGVYAVIRKSDDPAEFIAALHILRLGRKYYPPSFQKE-----SKANERTKFIGERINS- 154

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ +E E L +  +GK   ++A+ L  S  TV+    + M K   KT    IA+ +  
Sbjct: 155 --LSPKEFEVLRYFIQGKPIMQVALHLNRSIKTVSGQKIAAMHKLNVKTDQELIAFCLET 212

Query: 244 NI 245
            +
Sbjct: 213 GL 214


>gi|126650269|ref|ZP_01722497.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592919|gb|EAZ86901.1| two-component response regulator [Bacillus sp. B14905]
          Length = 208

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +   S      ++   +        ++  D L  +           +S   +  ++  L+
Sbjct: 98  DGLLSKLATKEQVIQTIQAALRGEILLAADFLDFVQQ---------RSNLPNTQQEVLLS 148

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E E L  +++G T+  IA  +G+++ TV NY++ +  K   ++R+ A+  A     +
Sbjct: 149 DKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLFVKLNVESRAEAVIVAKEKAWI 207


>gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 218

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYD 177
                          T +   +  G+ LL        RD +   +  +  +  +      
Sbjct: 87  ANRALLSGIRGVFYTTDNADVLMKGIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLT 146

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +  +LT RE   ++ +S G  + EIA  L IS +TV  ++ S  RKT  + R   +
Sbjct: 147 DGDIEPIKLTKREKAIISLMSNGSKNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELL 206

Query: 238 AYAVRN 243
           ++A +N
Sbjct: 207 SWAQQN 212


>gi|213970544|ref|ZP_03398671.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
 gi|213924715|gb|EEB58283.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. tomato T1]
          Length = 212

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++   +                   P     
Sbjct: 39  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFSTMGL----PSKILVLTSQTPN---- 90

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +                 LA        + 
Sbjct: 91  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQA------LACAVREDGMTS 144

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    
Sbjct: 145 ELELFKLVN--DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVEL 202

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 203 IEMAKRNALV 212


>gi|217978159|ref|YP_002362306.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
 gi|217503535|gb|ACK50944.1| two component transcriptional regulator, LuxR family [Methylocella
           silvestris BL2]
          Length = 306

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 69/223 (30%), Gaps = 28/223 (12%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      +L+AR+              +  +  G       R  +   +  + +  
Sbjct: 106 VDYVTKPIVIGELVARIKVHLANARIAYGARSALDATG-------RCLMATNESGELLWC 158

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +     L+              L+R                     +             
Sbjct: 159 TPQAERLLSAEIGEAGWIDAGNLRRL--------------SLLRQDIGLGPKCAVLQFGS 204

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            RI    L   G      RL E    A   A   K           LT RE E L W++ 
Sbjct: 205 RRIECQFLSRTGPDEFLYRLKEADSEAGDGAQRLKEA-------MTLTSREAEVLVWLAA 257

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           GK++ +I+ IL IS  TVN ++  I RK   + R+ A   AV+
Sbjct: 258 GKSNRDISAILSISPRTVNKHLEQIFRKLGVENRAAAAVMAVQ 300



 Score = 35.3 bits (80), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 17/135 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFDL 86
           ++ +D T      +    E  G + F           +         LD+ + S   F L
Sbjct: 11  ILTIDDTPETLAFLTEALEREGLTVFAAIDGQSALNSLAEITPDLILLDARMPSMDGFQL 70

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG--L 144
            R +       +  ++      F          I   A     Y +    +  +     +
Sbjct: 71  CRRIKQEPHFSHVPII------FMTGLTETEHVIEGLAAGGVDYVTKPIVIGELVARIKV 124

Query: 145 MLLFPKGRIILRDRL 159
            L   +     R  L
Sbjct: 125 HLANARIAYGARSAL 139


>gi|242373618|ref|ZP_04819192.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348586|gb|EES40188.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 200

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 62/222 (27%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D L     +   +     M  L +   G      +  +      LD  +      
Sbjct: 4   LIIAEDQLMLRKAMVQLIELNEEMKVLKDVENGKEALQFIENEKPDVAILDIEIPGMTGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++  +     +           +    F          A   + Y      V  +   +
Sbjct: 64  EILAQIRAKGLN--------TKVIIVTTFKRPGYFEKAVANGVDAYVLKERSVEDLVSTI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +      +  +                 + +   LT +E   L  I  G +S 
Sbjct: 116 YNVMNGEKEYSTSLMTSL-----------------FKESNPLTHKEQVVLREIGNGLSSK 158

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV NY ++I+ K  +  R  A   A     +
Sbjct: 159 EIAEKLYLSDGTVRNYTSTIIDKLYSDNRFDAWKKATAKGWI 200


>gi|198276688|ref|ZP_03209219.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
 gi|198270213|gb|EDY94483.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135]
          Length = 195

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            ++             + EL+ RE+E L  +++G  + EIA  L IS  TV ++  +I  
Sbjct: 111 GHELTHHPVTPPATDAEHELSAREIEVLRLVTKGLINKEIADKLHISLTTVISHRKNITE 170

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV +  +
Sbjct: 171 KLGIKSVSGLAIYAVMHGYI 190


>gi|49079272|gb|AAT49874.1| PA1397 [synthetic construct]
          Length = 211

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 35/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R    AR+                              + 
Sbjct: 4   RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLADE--------------GEQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD         +++  +             R T +   +               +
Sbjct: 50  PDSLILDLRFPGLTRIEMLADLRRR--------FPRTTLIVVSMVDDPQLIGEVMNAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   ++ +     ++  +    + L                 +   LT 
Sbjct: 102 GFLGKSIAPEELGQAILAIRAGEVLVRYEPSGLLPL-------------QPSPRLEGLTE 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+ + L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 149 RQPDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|319762911|ref|YP_004126848.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330824990|ref|YP_004388293.1| two component LuxR family transcriptional regulator [Alicycliphilus
           denitrificans K601]
 gi|317117472|gb|ADU99960.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329310362|gb|AEB84777.1| two component transcriptional regulator, LuxR family
           [Alicycliphilus denitrificans K601]
          Length = 208

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 68/241 (28%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R               +         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAESFLTRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLVERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    FD   +   +  +  +               A       +      
Sbjct: 96  NTMKKGALDFIQKPFDEEELLGLVERMLDR---------------AREAFAGHQQAASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLSKLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|239997012|ref|ZP_04717536.1| two component LuxR family transcriptional regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 173

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R + F    LD  + +     L   +            +    L   +F  +        
Sbjct: 5   RANHFDLIILDINLGTTSGLTLAEYIVQRW--------EHAKVLMFSMFDDISIIDRAMK 56

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y S   +   +   +  +    R +  +   E+            +     G   
Sbjct: 57  LGAMGYVSKQSEPDVLISAVTSIIKGRRYLEHNTAIELATF---------NLSHSGGNLT 107

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT RE++    I+ G    ++A  L IS  TV+N I  + RK   +T +  +  AV+  
Sbjct: 108 DLTQRELDIFLGIANGLCRKQVAESLNISEKTVSNVITQLKRKLELQTNAEFVHLAVKQG 167

Query: 245 IV 246
            +
Sbjct: 168 YI 169


>gi|170756351|ref|YP_001781185.1| LuxR family transcriptional regulator [Clostridium botulinum B1
           str. Okra]
 gi|169121563|gb|ACA45399.1| transcriptional regulator, LuxR family [Clostridium botulinum B1
           str. Okra]
          Length = 865

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E +  + EG ++ +I   L IS  TV  ++ +I  K     R  A+  
Sbjct: 803 LTEREKEVMEILFEGSSNKQIGKRLNISLATVKTHMINIYSKLQVSNRVQAVEK 856


>gi|90419335|ref|ZP_01227245.1| two-component, nitrogen fixation regulatory protein fixJ
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90336272|gb|EAS50013.1| two-component, nitrogen fixation regulatory protein fixJ
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 206

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 32/220 (14%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPF 84
           A +  +D        +  L    G +  +                     D  +      
Sbjct: 5   AVVHVIDDDADVRQSLAFLLATAGLAVRVYDSATAFLASLEGLQPGCIVSDVRMPGIDGL 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R +                 +       +P  +              FD   +   +
Sbjct: 65  ELQRRLKGLGVM--------LPVVIMTGHADVPLAVQAMKEGAVDLVEKPFDDEILLEAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                +                 +Q           G+   L+ RE + L  +  G  + 
Sbjct: 117 HTALER---------------CNHQGGPDGDTARIQGRLQSLSPRERQVLDGLLAGHPNK 161

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            IA  LG+S  TV  + A++M K    + S  +  AVR  
Sbjct: 162 TIAYDLGLSPRTVEVHRANVMTKMEASSLSELVRMAVRAG 201


>gi|260174355|ref|ZP_05760767.1| LuxR family transcriptional regulator [Bacteroides sp. D2]
 gi|315922623|ref|ZP_07918863.1| luxR family transcriptional regulator [Bacteroides sp. D2]
 gi|313696498|gb|EFS33333.1| luxR family transcriptional regulator [Bacteroides sp. D2]
          Length = 200

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  I++G  + EIA  L IS  TV  +  +IM K   K+ SG   YAV N  
Sbjct: 135 LSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIMEKLGIKSVSGLTIYAVMNGY 194

Query: 246 V 246
           +
Sbjct: 195 I 195


>gi|116255424|ref|YP_771257.1| putative two-component response regulator transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115260072|emb|CAK03171.1| putative two-component response regulator transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 210

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 54/209 (25%), Gaps = 23/209 (11%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
                +     +       G      +         LD  +       + R +       
Sbjct: 16  TATARLLAAHGLKVEAYESGDQFLAGLSACEPGCVLLDLQMPGQSGLQIQRRLCELA--- 72

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
                     +F      +  ++         +                      +++  
Sbjct: 73  -----PLLPVVFLTGEGDIKASVEAMKAGAKDFLEK--------------SSTTAVLMEA 113

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
               +       A   +           L+ RE E   ++  G+ + +IA  LGIS  TV
Sbjct: 114 IDRALIQYERQLAEHDRLQAQRTL-VAGLSPREAEVFRFLIRGRLNKQIAYALGISERTV 172

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +   +M K   ++ + A++ A    ++
Sbjct: 173 KVHRHQVMDKLGVRSLAEAVSIAANIGLI 201


>gi|91786468|ref|YP_547420.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91695693|gb|ABE42522.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 297

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 67/214 (31%), Gaps = 35/214 (16%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V       +++AR+         T       +  G    L+        +   + + 
Sbjct: 107 VDYVVKPLRAQEVVARLHTHTRNARMTRLAREAVDVAGFGVVLVDAKGRVAWRSPQAALW 166

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
              P  L         +    V                       G  ++          
Sbjct: 167 LQTPEGLAAA-----GELPDPVH------------------AALGGKTDQVLMTLAGRQL 203

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
               +  +     ++L ++    G+  +  AN              LT RE E L+W+++
Sbjct: 204 SVRNMGRVGIGETMLLLEQRGANGMAPSRLANAA------------LTPRETEVLSWLAK 251

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           GKT+ +I  ILG+S  TVN ++  I  K   +TR
Sbjct: 252 GKTNKDIGDILGMSHRTVNKHLEHIFEKLGVETR 285



 Score = 35.3 bits (80), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 13/156 (8%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
              D QR      +    D  + +  L  ++        L    G +    +        
Sbjct: 3   ANPDPQR----PVVLVVDDAPSSLGMLCDSLEGEGY-TVLVARDGDAALQRLELVAPDAI 57

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD+++     FD  R +  +        L     +F       P  +   A     Y  
Sbjct: 58  LLDAVMPGLSGFDTCRRIKAN------PALAHIPVIFMTGLSETPHVLEGFACGGVDYVV 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                  +   L       R+       E   +A +
Sbjct: 112 KPLRAQEVVARLHTHTRNARM--TRLAREAVDVAGF 145


>gi|260770408|ref|ZP_05879341.1| putative fimbrial protein Z transcriptional regulator [Vibrio
           furnissii CIP 102972]
 gi|260615746|gb|EEX40932.1| putative fimbrial protein Z transcriptional regulator [Vibrio
           furnissii CIP 102972]
          Length = 183

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 47  MRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPT 106
                L E         +R        LD  +     F+++R + L              
Sbjct: 12  RFTEVLVESDPFVGVKKLRQTQVDFLILDVNLVKLDGFEVLRRLKLQGFT--------GK 63

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            LF     +   + T      + Y S + D++ ++  +  +                   
Sbjct: 64  TLFVSASESRLYSETAMRVGADGYISKSEDLSILQDAVECILNG---------------- 107

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
               + FK        D EL+ +E+    ++ +GK++ EIA IL +S  T++ Y + I+ 
Sbjct: 108 ---YSFFKVTTDTKSMDVELSKQELAVFRFLVDGKSNKEIAEILSLSPKTISTYKSRILD 164

Query: 227 KTATKTRSGA 236
           K    +    
Sbjct: 165 KYQVNSIVEL 174


>gi|317054459|ref|YP_004118484.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
 gi|316952454|gb|ADU71928.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b]
          Length = 243

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 19/191 (9%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP----------- 123
           D I  SD+P ++      ++      V+      F          I              
Sbjct: 43  DMIFISDFPDEISDNYLNNKYQYVDPVIINALSRFTHFSWDENLKINSMWTVKRIFEKIK 102

Query: 124 -AGMDNRYCSLTFDVARIRIGLML-----LFPKGRIILRDRLWEIGLLAAYQANMFKSY- 176
              +   +  +  +       L+      L      +      E+  +      M  S  
Sbjct: 103 SHNIIRGHAFVLHENNNNLAMLLFYIDKFLTSDIDDVFNKNRDELQGVLIDTHEMLLSVY 162

Query: 177 -DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    K+   + RE E L W S+G T  ++A +L I+ +T+  ++  +++K   K    
Sbjct: 163 SEGEEVKEDVFSARESEILYWCSKGYTYSQVAEMLNITVSTIKFHMGKVVKKMGVKNAKH 222

Query: 236 AIAYAVRNNIV 246
           AI+  +   ++
Sbjct: 223 AISLGIELKMI 233


>gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis]
 gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis]
          Length = 219

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 160 WEIGLLAAYQANMFKSYDVHWG-----------KDFELTGREVECLTWISEGKTSDEIAV 208
             +G++  +     +                      L+ RE E L W+  GKT+ EI +
Sbjct: 118 QMLGMIMPHLDAAIRRIGHLTPVVKDEDLLDSMAQGGLSDREQEILHWVRSGKTNLEIGM 177

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IL IS NTV N++  I +K     R+ A+A 
Sbjct: 178 ILNISANTVKNHLKRIFQKLDVSCRAQAVAK 208


>gi|239815768|ref|YP_002944678.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239802345|gb|ACS19412.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 213

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 30/218 (13%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +       D L+ +I     +             G     +          LD  +   
Sbjct: 17  LIDDDQAVRDSLSLLIG-TVGLRVQGWADPQAFIDGFDRASVGAI------VLDVRMPGI 69

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               ++  +     D+          +      T+             +     D  ++ 
Sbjct: 70  SGLTVLDRLMAQGVDQ--------PVIMLTGHGTVEMCRRAFKAGAAEFLEKPVDDEQLL 121

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             L     +                       ++ +    +  +L+ RE E L +I +G 
Sbjct: 122 EALQQAVRQHV---------------RSRERSQADNAARERVAQLSEREREVLAFIVQGL 166

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T+ EIA  L +S  TV  + A++  K    + +  I  
Sbjct: 167 TNKEIARTLALSPRTVETHRANLFAKLDCDSLAQLIRR 204


>gi|107100830|ref|ZP_01364748.1| hypothetical protein PaerPA_01001859 [Pseudomonas aeruginosa PACS2]
          Length = 210

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 35/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R    AR+                              + 
Sbjct: 4   RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLAGE--------------GEQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD         +++  +             R T +   +               +
Sbjct: 50  PDSLILDLRFPGLTRIEMLADLRRR--------FPRTTLIVVSMVDDPQLIGEVMNAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   ++ +     ++  +    + L                 +   LT 
Sbjct: 102 GFLGKSIAPEELGQAILAIRAGEVLVRYEPSGLLPL-------------QPSPRLEGLTE 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 149 RQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|254234497|ref|ZP_04927820.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719]
 gi|126166428|gb|EAZ51939.1| hypothetical protein PACG_00356 [Pseudomonas aeruginosa C3719]
          Length = 210

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 35/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R    AR+                              + 
Sbjct: 4   RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLAGE--------------GEQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD         +++  +             R T +   +               +
Sbjct: 50  PDSLILDLRFPGLTRIEMLADLRRQ--------FPRTTLIVVSMVDDPQLIGEVMNAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   ++ +     ++  +    + L                 +   LT 
Sbjct: 102 GFLGKSIAPEELGQAILAIRAGEVLVRYEPSGLLPL-------------QPSPRLEGLTE 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 149 RQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|220926584|ref|YP_002501886.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219951191|gb|ACL61583.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 270

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 68/246 (27%), Gaps = 31/246 (12%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS- 80
            +   P   + L R++      S    +  L    GA            +Q  D ++   
Sbjct: 9   VIDSNPLFREGLVRIL----PKSQFRTIRPLASANGAD------LCEAGDQSPDLVLLGA 58

Query: 81  -DWPFDLVRCMALSEKDKYYNVLQRPTELFCP-------------------VFHTLPENI 120
            D     V  +           +   ++   P                       L + I
Sbjct: 59  RDAAPATVDEITALHWQWPGARIVVLSDRHDPCVIAAAFRAGASAYLEQLRSHDALVKII 118

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                 +    S   +       L                          +  +  D   
Sbjct: 119 ELVMAGETVLTSPRLNQLLKSELLPTPPLGQSAAAPSDRGASSNGGTAVPDGKRLADNLQ 178

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE   LT ++ G ++  IA  L ++  TV  ++ SI+RK     R+ A  +A
Sbjct: 179 INMPHLSERERLILTMLASGSSNKVIARRLDVTEATVKVHVKSILRKIRVSNRTQAAIWA 238

Query: 241 VRNNIV 246
            +N IV
Sbjct: 239 TKNGIV 244


>gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
 gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805]
          Length = 235

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 23/200 (11%)

Query: 50  YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109
            A TE  G     LV           S + S +  +L+R +          ++       
Sbjct: 52  AATTEEEGFE---LVLRTQPDLLICSSDLESGYGINLLRRVKAELPTCQLLIV--LVRET 106

Query: 110 CPVFHTLPENITPPAGMDNRYCSLT---FDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
             V               +     +        +   L  L   G               
Sbjct: 107 QTVV------QEAMEAFADGVVFKSSLGTGRGDLISALRTLAEGGVYFPEQIRR------ 154

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                             EL+ RE+E    ++ G  ++ IA +LG+S  TV +++ + M 
Sbjct: 155 ---IAASTPQPDLPPLVEELSPRELEVAAGVARGLKNNAIASLLGLSVETVKSHVGNAMD 211

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   + R+     A+   ++
Sbjct: 212 KLGARDRTQMAVMALLYGLI 231


>gi|83716650|ref|YP_439945.1| LuxR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83650475|gb|ABC34539.1| transcriptional regulator, LuxR family [Burkholderia thailandensis
           E264]
          Length = 376

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 57/248 (22%), Gaps = 26/248 (10%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW- 82
                R  +   +     T        +L   +G + F     +  ++      +   + 
Sbjct: 130 PRFAPRLGIAEMLASARGTAECGRIATSLLRLMGFATFAYFALEFTRDDAECLYLHEAFT 189

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD-----NRYCSLTFDV 137
           P                  +        PV   L   +            + +  +  D 
Sbjct: 190 PAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLARDHAARGSDALDGFLRVMHDD 248

Query: 138 A----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS---YDV 178
                                           I    L ++  L                
Sbjct: 249 DMCSGVMYSMPVPGTRVHAFASFTAPRRSRDWISSATLEQVLALGLSVHRFAAPQLIASA 308

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                  LT  E E L  I+EG +  EI   L  S + V+ ++  + ++     R     
Sbjct: 309 RERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVDYHLRKLRKRFGVANRIQLTY 368

Query: 239 YAVRNNIV 246
           +A    ++
Sbjct: 369 FASSRGLI 376


>gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 198

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 2/148 (1%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLW 160
           V+   T+   P        +       N       D A      +    +G +       
Sbjct: 50  VVLVGTQRAVPTGVEATRRLVAAHPQANVIVFGAPDDAGSIAAAIAGGARGYLRWDASRP 109

Query: 161 EIGLLAAY--QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           E+    A+   +    +         +LT RE++ L  +S+GK++ +I   L +S +TV 
Sbjct: 110 ELVAALAHTLASTAVPTPRTPADPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVK 169

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +   + RK   + R+ A+A+  R  +V
Sbjct: 170 THARRLFRKLGVRDRAQAVAHGFRRGLV 197


>gi|322506324|gb|ADX01778.1| ER transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 197

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 18/189 (9%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           + DLL+  + +         + +    +G  +            +  +I+ +++P    +
Sbjct: 5   QEDLLSAFLVVKNEYQLFEIVKSTASRLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQK 64

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHT----------LPENITPPAGMDNRYCSLTFDVA 138
                +  K    +Q       P+  +                   G++  +   + D  
Sbjct: 65  RYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKTQAEKDFWEEARSYGLNVGWAQSSRDFI 124

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREV 191
             R  L L     + +             +      S       D E       LT RE 
Sbjct: 125 GTRGMLTLARSNDQ-LSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREK 183

Query: 192 ECLTWISEG 200
           E L W +EG
Sbjct: 184 EALRWTAEG 192


>gi|313887441|ref|ZP_07821130.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923083|gb|EFR33903.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 201

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I L+   +    +S +    K   L+ RE E +TW++ G T+ EIA +L +S +TV  + 
Sbjct: 109 IQLIQEAEQPDTESLESEEAKQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHR 168

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I  K    + SG   YA+ NN++
Sbjct: 169 RNIAAKLDIHSPSGLTIYALMNNLI 193


>gi|229171880|ref|ZP_04299449.1| hypothetical protein bcere0006_9970 [Bacillus cereus MM3]
 gi|228611590|gb|EEK68843.1| hypothetical protein bcere0006_9970 [Bacillus cereus MM3]
          Length = 221

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D +A  +     +        +     A +   +    +    +D  + +    
Sbjct: 5   EVLIIDDHMAVGMGTKALIETEDICADVLFDS-AEYLSCITKKKYDVYLVDLFMPNLNGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ + +   + D    ++        P F+ L EN        +   S T    ++   +
Sbjct: 64  EVTKGI--LKHDPDAAIIIYTGFDIEPHFNLLLENN------ISGIISKTASKEQMITTI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                K  +I      ++  +  + A      +        LT RE E L ++ +G T+ 
Sbjct: 116 RCAKRKEVVIPLGLFRQLR-IQQFSAKSVLQSEKTNELPITLTQREREVLIFVQQGMTNK 174

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IAV L +S+ ++   +  +  K    +R  A+  A    I+
Sbjct: 175 NIAVTLNLSQRSIEYTLTELFNKLRVSSRVEAVEKAKSLGIL 216


>gi|299066606|emb|CBJ37796.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum CMR15]
          Length = 210

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 39/235 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R            +                R + 
Sbjct: 14  TVFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLIDDK----------------RSEG 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   +          ++      F      +P  ++       
Sbjct: 58  VGCLILDVRMQGMSGPELQDRLLAENNRM--PIV------FVTGHGDVPMAVSTMKKGAV 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +       R++ + R  +         +  +           LT 
Sbjct: 110 DFIEKPFDESELRELV------ERMLSKARTED---------SAAREQKAANDLLSRLTT 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|294631904|ref|ZP_06710464.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292835237|gb|EFF93586.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 203

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 59/230 (25%), Gaps = 29/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R      +      L  ++ L+        +       G                +D 
Sbjct: 2   AIRLLLAEDMNMVRGALVALLGLEDDFEVVAELAR-----GDEIVPTALDCRPDVAIIDV 56

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      +    +           L     L                   N Y      
Sbjct: 57  DLPGLDGLNAAALLREK--------LPECRSLILTSLGRPGTVRRALTAQVNGYLLKDAP 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              +   +  +    R+I      ++   A                +  +T RE E L  
Sbjct: 109 PHELADAVRRVVAGQRVIDPQLALDVWGTA----------------ENPMTERETEVLRL 152

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++G  + EIA  L ++R TV NY+ S + K   + R  AI  A     +
Sbjct: 153 AADGLEAGEIAKQLRLARGTVRNYLTSAVTKLLARNRVDAIRIAREAGWL 202


>gi|254496316|ref|ZP_05109202.1| two-component response regulator [Legionella drancourtii LLAP12]
 gi|254354477|gb|EET13126.1| two-component response regulator [Legionella drancourtii LLAP12]
          Length = 212

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 19/139 (13%)

Query: 107 ELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA 166
            +    +  +P  I         +    F+   +   +     +  II  D +       
Sbjct: 80  VIIITGYGDIPMAIRAMKSGAVDFIVKPFNEQFLLETVQKHANR--IIDTDAI------- 130

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y      S          LT RE + +  ISEGK + EIA  L IS +TV  + A+IMR
Sbjct: 131 EYINERINS----------LTERERQIIDLISEGKLNKEIAYELTISISTVEAHRANIMR 180

Query: 227 KTATKTRSGAIAYAVRNNI 245
           K   K  +  I    ++  
Sbjct: 181 KMQAKNLAHLIKLYYKSQW 199


>gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 151

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             L     +    +         +LT RE++ L  +S+GK++ +I   L +S +TV  + 
Sbjct: 66  AALAHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKSNGQIGRELYLSEDTVKTHA 125

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + RK   + R+ A+A+  R  +V
Sbjct: 126 RRLFRKLGVRDRAQAVAHGFRRGLV 150


>gi|229589128|ref|YP_002871247.1| putative two-component system LuxR family response regulator
           [Pseudomonas fluorescens SBW25]
 gi|229360994|emb|CAY47856.1| putative two-component system LuxR-family response regulator
           [Pseudomonas fluorescens SBW25]
          Length = 215

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 63/241 (26%), Gaps = 32/241 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++N+V+  +       V  +  R      +     +     ++ +             
Sbjct: 1   MREMNVVIADDHPIVLVGVREIVQRDARYTLVGEAVSSSQLIEQLRS------------- 47

Query: 65  RWDLFQEQKLDSIVSSD--WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                Q    D  +  D  +   L     +        VL         +   L E    
Sbjct: 48  --HRPQVLITDFNMPGDDTYGDGLKLIEYILRHFPETQVLVLTMISNSLILTRLQEL--- 102

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                            I   L  +  +      +             ++  +      +
Sbjct: 103 ---GVAGVIQKNHLHGEIEKALGAISAQRSYRAPE---------PAATSVVVNATQVQER 150

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+E L     G +  +IA  L  S  TV+    S MRK    +    + Y + 
Sbjct: 151 FQSLSPREMEVLRLFVTGMSVSDIARQLSRSNKTVSAQKVSAMRKLEVDSDQALLTYCIE 210

Query: 243 N 243
            
Sbjct: 211 A 211


>gi|190889763|ref|YP_001976305.1| two-component response regulator nitrogen regulation protein
           [Rhizobium etli CIAT 652]
 gi|190695042|gb|ACE89127.1| two-component response regulator nitrogen regulation protein
           [Rhizobium etli CIAT 652]
          Length = 222

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 33/215 (15%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL---------DSIVSSDWPFDL 86
           +  +D   +    +  L    G +       + F +            D  +      +L
Sbjct: 7   IHLVDDEEALRRSLTFLLASAGFAVRAHSCANAFLDLLPLSGRNCLVTDLRMPDVNGIEL 66

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           ++ +  S  +           +       +   +       + +         +   + L
Sbjct: 67  LQRLRQSSVN--------VPAIVITGQGDVAAAVQAMKAGASDFLEKPLREETLIAAINL 118

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +                          +    +  +LT RE + LT + +G  +  I
Sbjct: 119 AMGQR----------------RPGRSIADSESVAARLRQLTDREHQVLTGVLDGLQNKMI 162

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           A  LGIS  TV  + A++M K   +  +  +  AV
Sbjct: 163 AYQLGISSRTVEVHRANVMAKMGARNLAELMRMAV 197


>gi|299147639|ref|ZP_07040703.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
 gi|298514426|gb|EFI38311.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23]
          Length = 257

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI       ++
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|298250665|ref|ZP_06974469.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
 gi|297548669|gb|EFH82536.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
            [Ktedonobacter racemifer DSM 44963]
          Length = 1075

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 163  GLLAAYQANMFKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LLA                  EL +  E   L  ++EG T  EIA  L  + NTV  + 
Sbjct: 991  QLLAMLDKQDMAEKPAENSASTELLSEHEFVILRCLAEGYTDREIARRLVRAENTVKTHT 1050

Query: 222  ASIMRKTATKTRSGAIAYAVRNNIV 246
              I  K    +R+ AIA +    ++
Sbjct: 1051 KHIYDKLNVHSRTQAIARSRELGLL 1075


>gi|237722799|ref|ZP_04553280.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|229447321|gb|EEO53112.1| transcriptional regulator [Bacteroides sp. 2_2_4]
          Length = 257

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI       ++
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|296158505|ref|ZP_06841335.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295891073|gb|EFG70861.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 203

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 28/228 (12%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   +   P     +A ++  D  +             G    ++V  +      +D  +
Sbjct: 3   RIVIIDDHPIIRRTIASVLHADPELELVGTCGD-----GEEGLVMVLAESPDLVIIDLDL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                  L+R +     +     +        P         +      N Y     +++
Sbjct: 58  PRLDGLSLIRRIREKNTE-----ISILVLSAKPEHIMAGYTRS---AGANGYVGKGREIS 109

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   L  +         D    +   +   A               L+ REVE L  ++
Sbjct: 110 ELVTALKTVLFGYDCFPADSADAVAAASGLSA---------------LSAREVEVLQHLA 154

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            G ++ +IA  L +S  TV+ Y + I  K    + +G I +A  + ++
Sbjct: 155 RGVSNRDIAGRLSLSDKTVSTYKSRIQEKLGLSSLAGLIEFAATHRLI 202


>gi|260175087|ref|ZP_05761499.1| LuxR family transcriptional regulator [Bacteroides sp. D2]
 gi|293371808|ref|ZP_06618218.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|315923316|ref|ZP_07919556.1| transcriptional regulator [Bacteroides sp. D2]
 gi|292633260|gb|EFF51831.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|313697191|gb|EFS34026.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 257

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE+E L  I +G  S EIA  L IS +TVN +  +++RK   +    AI       ++
Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQETGLL 256


>gi|302535729|ref|ZP_07288071.1| luxR family two component system response regulator [Streptomyces
           sp. C]
 gi|302444624|gb|EFL16440.1| luxR family two component system response regulator [Streptomyces
           sp. C]
          Length = 203

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 66/242 (27%), Gaps = 39/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  ++      ++ L    D L  +                    G     + 
Sbjct: 1   MSPVRVLLADDEHLIRGALAALLGLEDDLVVVAEAAS---------------GPEALAMA 45

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           R        LD  +       +   +           L     +               A
Sbjct: 46  RAHRPDVAVLDLQMPGADGVSVATSLRAE--------LPDCKTMIVTSHGRPGHLKRALA 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T    R+   +  +   GR +  +                   D     D 
Sbjct: 98  AGVRAFAPKTVSAQRLAELIRTVHAGGRYVDPELAA----------------DAISAGDS 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L   ++G    EIA    +S+ TV NY++S   K   + R  A+  A +  
Sbjct: 142 PLTAREAEVLELAADGAPIAEIAERASLSQGTVRNYLSSAATKLGAENRHTAVRLARQRG 201

Query: 245 IV 246
            V
Sbjct: 202 WV 203


>gi|228970024|ref|ZP_04130734.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228789688|gb|EEM37560.1| Two-component protein Kinase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 86

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 170 ANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
            +  K         +ELT RE+E L  +++G     IA  L +S  TV NY ++   K  
Sbjct: 9   FDEQKETPQSKATAYELTAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLG 68

Query: 230 TKTRSGAIAYAVRNNIV 246
            + +  A+  A+   I+
Sbjct: 69  VRNKEEAVQKALEIGII 85


>gi|223937686|ref|ZP_03629588.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223893658|gb|EEF60117.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 454

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 12/216 (5%)

Query: 35  RMIPLDCTVSWTMRM-YALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVR 88
           R+  ++        + + L    G     +           + +  D I+ +     +  
Sbjct: 244 RVAIVEPDGGLKEALVFWLNRQPGFECNEIWISAEEALSRLEHRHPDMILVNRLQPGMRA 303

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              + +         +       ++    +     +G+   Y         +   ++  F
Sbjct: 304 MELVDKLK---ARFPQLPVFTYGIYEDSDQIFIRVSGVRTGYIFKRRTPGELLEPILGAF 360

Query: 149 PKGRIILRDRLWEI-GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
             G +  ++   +I     ++        +     +  LT RE++ L  +S+G    EIA
Sbjct: 361 KHGALDSKEVFTQIKNYFQSFFGGESSEKENLAMAN--LTDRELKVLNCVSKGYLDKEIA 418

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LGIS  TV+N++ +   K    TR+ A    ++ 
Sbjct: 419 HELGISLWTVHNHLKNTYEKLNVHTRTEAALKYLQK 454


>gi|149926855|ref|ZP_01915114.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149824407|gb|EDM83625.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 205

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 69/238 (28%), Gaps = 42/238 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  + +  +DE     +  L            +       + +  L             W
Sbjct: 2   QETVFIVDDDEAVRDSLQWLIETEGY-----QVKTYEDPELFLEQLV------------W 44

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      ++ + +          ++         +       +      
Sbjct: 45  PQPCVLLLDIRMPKLSGLEVQKTLNERGIPI--PIVFITGHGDVTL------AVETMKNG 96

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE- 185
              +    FD  +I+  +                   +  A++       D    K +  
Sbjct: 97  AVDFLEKPFDEGKIKDLIHQ----------------HMRHAHELAQTAKLDEQINKLYSK 140

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LT RE++ L  I  G+ + +IA  L IS  TV  + A+IM K    T +  +  A+R 
Sbjct: 141 LTTRELQVLERIVSGRLNKQIADDLNISIKTVEAHRANIMDKLQVTTVADLLKIALRK 198


>gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 233

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 62/233 (26%), Gaps = 22/233 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           H     D +  +       +      A     G    L VR  +         V +    
Sbjct: 2   HAAALEDFVETISREVAPDALWQSTLAFLADAGFDKVLRVRAGVSG-----VTVRTTLSD 56

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI---------------TPPAGMDNR 129
                   +   K    L+        V                           G    
Sbjct: 57  GFQTFYWENGYQKDDPFLRHCMTSPVAVATGADYLDRYDYLNERSRRLILSAAEDGFRAG 116

Query: 130 YCSLTFDVARIRIGLMLLFP--KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           +  +     + R     +    +   + R R     L+      +    D        LT
Sbjct: 117 FSVVAPVPEQRRALGWNIGSSLRRAEVERIRQEREPLIRLALVAVQNRLDGPEAVRASLT 176

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE+ECL+ I+ G     IA  LGI   TV  ++ +  +K    TR  A+A A
Sbjct: 177 PRELECLSLIASGLRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVALA 229


>gi|239943901|ref|ZP_04695838.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 260

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 61/272 (22%), Gaps = 69/272 (25%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +V+  ++    + +  L +    +  +                    G   +        
Sbjct: 1   MVVADDNPVVRAGLGVLLSGRADIQVVAEAAD---------------GREAYEKTLEHRP 45

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +        +             VL                           
Sbjct: 46  DVVLLDVRMPGVDGISAL-----PHLVGIAPVL------MLTYSRESEIVHEALRLGAGG 94

Query: 130 YCSL-TFDVARIRIGLMLLFPKGR-----------------------------------I 153
           Y     F   ++   +                                            
Sbjct: 95  YLVHGEFTANQLVQAVRDTKDGRANFTATAADALLAHMRHGTPPQRGPLPEGLGSALATA 154

Query: 154 ILRDRLWE----IGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEI 206
                  E    +  L         S       +   + L+ REVE +  I+ G ++ +I
Sbjct: 155 PPPAHTAEPSESLSQLQPVVGESSVSGGTVPTPNRQQYGLSSREVEVMDLIASGMSNQQI 214

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           A    IS  TV N+I  I  K  + TRS AIA
Sbjct: 215 AATCFISEKTVKNHINRIFTKLHSATRSEAIA 246


>gi|229819768|ref|YP_002881294.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565681|gb|ACQ79532.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM
           12333]
          Length = 967

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 65/224 (29%), Gaps = 19/224 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           V       D    +   D  +             G       R  L + +   S +  + 
Sbjct: 759 VRARSRGDDAAELLQRGDELLRRAETAAERGRPRGGVLGPEGRSWLARTRAEHSRLHGEH 818

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             ++ R         +   L R       +   L                       +  
Sbjct: 819 NPEVWRVCVTEFSYGHVPELARSRWR---LAEALVGAGEREEAGAV-----------VTE 864

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L      G   L   + + G  A           V       LT RE + L  +++G +
Sbjct: 865 ALRAATEMGARPLERAIRDFGRRA-----RLAVPGVRLETSGVLTDRERDVLRLVADGLS 919

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I   L IS  TV+ +I++++ K     R+ A+  A R  ++
Sbjct: 920 NRQIGERLYISPKTVSVHISNLLAKLGVARRAEAVDVAHRRGLL 963


>gi|146309054|ref|YP_001189519.1| two component LuxR family transcriptional regulator [Pseudomonas
           mendocina ymp]
 gi|145577255|gb|ABP86787.1| two component transcriptional regulator, LuxR family [Pseudomonas
           mendocina ymp]
          Length = 216

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 63/233 (27%), Gaps = 35/233 (15%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M    QQ  I++  +       +S +  R    A++              A         
Sbjct: 6   MPERFQQERIIVADDHPVFRDGLSRIAQRVFAQAQVCEAGDMDEVLSLANAGAAPCLF-- 63

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        LD +     P  +       +     +++                  
Sbjct: 64  ------------ILDLLFPGQSPQAIGAL---RQHFPCSSIVIVSMV------DNRELID 102

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A   + +         I   L+ +     ++                    ++    
Sbjct: 103 EVMAAGADGFIGKATPPDDIAEALVAVRAGDFVMT------------LGPPGLPTFAEDR 150

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +LT R+ E L  +  G ++ EIA  L IS  TV  +++S++R     TR
Sbjct: 151 HLLEQLTPRQQEVLRLVVRGLSNKEIARQLDISPFTVRIHVSSLLRTLDVGTR 203


>gi|150377628|ref|YP_001314223.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150032175|gb|ABR64290.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 226

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 68/216 (31%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPFDLVRC 89
           +D  +S    +  L    G    L                    LD  +      DL   
Sbjct: 27  VDDDISVRESLELLIGSAGWRPILFDSAQAFLSATPNAGPSCLVLDVNMPGLNGLDLQSL 86

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S          R   +F   F  +P  +    G    + +   D   +   +     
Sbjct: 87  ITKSGN--------RTPIIFVSGFGDVPMTVKALKGGALDFLTKPIDAEALLAAIQSALS 138

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +   ++RD    + L   Y A               LT RE E ++ + +G  + ++A  
Sbjct: 139 QSEALIRDEEELMRLQVCYDA---------------LTPREREVMSGVVKGLLNKQVAFE 183

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L IS  TV  +   +MRK + ++    +  A +  I
Sbjct: 184 LDISEITVKAHRGQVMRKMSARSLPDLVNMAAKLRI 219


>gi|330977656|gb|EGH77559.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 208

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L              +  
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALTCAVR---------EDG 137

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +  + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T   
Sbjct: 138 QTNELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVE 197

Query: 236 AIAYAVRNNIV 246
            I  A RN +V
Sbjct: 198 LIEMAKRNALV 208


>gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 23/221 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D+      L   ++    +  + E       L       +    D  +       
Sbjct: 4   VLLAEDMHMVRGALVALLNLESDIEVVAEVSTGDQIL----PAAKAAHPDVAIIDIDLPG 59

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
                A  E  +    +     L                   N +        ++   + 
Sbjct: 60  KDGLSAAIEIHESLPDVH---TLILTSLGRPGTVRRALDAKVNGFLLKDAPSDKLANAVR 116

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R+I  +                         D  LT RE+E L+  + G+T  +
Sbjct: 117 SVAIGRRVIDSELA----------------LAAWETDDCPLTPREIEILSLAARGRTVSD 160

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L +S  TV NY+A+++ K   + R  AI  A     +
Sbjct: 161 IASELFLSAGTVRNYLAAVVTKLNARNRVHAIRIATEAEWL 201


>gi|270295166|ref|ZP_06201367.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274413|gb|EFA20274.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 210

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 36/232 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L ++ + +       C                     L   + 
Sbjct: 9   RILVIDDHPIVAEGIIALASQLEGVT-CKGATCAKDVEQ---------------LTLKER 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127
           F    +D  +     F L+  +           + +   L   +    P  I   + ++ 
Sbjct: 53  FDLCIIDLELPDMNGFQLISHLHSQ--------IPKCGILIYTMH-EEPWIIAKLSTLNI 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N   S     + +R  +  L    R    +   E+           +  +       EL+
Sbjct: 104 NGAVSKNASTSELRDAISTLKNGTRYFS-NVFSEL---------DKEKQNTLPHALPELS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E L ++S+G ++ EI+ +L +S NT+  Y   +M K   K  +  +  
Sbjct: 154 RREKEVLAYLSQGLSTSEISQLLFLSINTIQTYRKRLMEKLEAKNVAELVYK 205


>gi|291297713|ref|YP_003508991.1| LuxR family two component transcriptional regulator [Stackebrandtia
           nassauensis DSM 44728]
 gi|290566933|gb|ADD39898.1| two component transcriptional regulator, LuxR family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 24/241 (9%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            ++   +++L  +D    + +  +      +  +                    G     
Sbjct: 1   MDVTTTSVLLVDDDPMVRNGLRMVLRADPGIVVVGEAGN---------------GRQAVD 45

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
             R        +D  +         R             +     L    FH     +  
Sbjct: 46  QARELRPDVVLMDLQMPVMDGVAATR---ELRGLPDAPAV-----LVLTTFHLDTYILDA 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y         I   + +      +        +    A  A   K  +     
Sbjct: 98  LGAGASGYLLKDIPPTEIARAVQMAAAGESVFSSSVTRSLVQRVASPATDPK-IEAARAA 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              LT RE E    ++ GK++  IA  + +S  TV  +++ I+ KT ++ R        R
Sbjct: 157 LAALTEREREVAAAVAAGKSNAAIASEMFMSEATVKTHVSRILTKTRSQNRVQIALTVYR 216

Query: 243 N 243
            
Sbjct: 217 A 217


>gi|222081806|ref|YP_002541171.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
 gi|221726485|gb|ACM29574.1| two-component nodulation response regulator protein [Agrobacterium
           radiobacter K84]
          Length = 204

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 32/218 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV---------RWDLFQEQKLDSIVSSDWPFDL 86
           +  +D   S    + +L   VG                R D      LD  +      D 
Sbjct: 10  IYVIDDDPSVRDGLDSLLRSVGYDVSSFASPRDFLKHRRSDGPSCLVLDVRMPDASGLDF 69

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +A +              +F      +P ++         +    F    +   +  
Sbjct: 70  QDELARTGNP--------LPIIFLTGHGDVPMSVRAMKAGAVEFLLKPFREQDLLDAIRQ 121

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              K R  LR                         +   LT RE E +  ++ G+ + +I
Sbjct: 122 ALEKDRTRLRQDAA---------------TTDLRERFATLTAREREVMALVARGRLNKQI 166

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           A  LG+S  TV  +    MRK    + +  I  A    
Sbjct: 167 AAELGLSEITVKVHRGQAMRKMQAGSVADLIRMADALG 204


>gi|254477704|ref|ZP_05091090.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
 gi|214031947|gb|EEB72782.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11]
          Length = 261

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 24/238 (10%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           D L  ++                + +G    L+ +      Q     +++D P D +   
Sbjct: 24  DTLDALLFSQDQQDRWHAAQRAADKIGVKSILVAQ--AVGIQGDIRWMNTDMPSDWIEEY 81

Query: 91  ALSEKDKYYNVLQRPTEL----------FCPVFHTLPENITPPAGM-----DNRYCSLTF 135
                 +    +   ++                 +         G+      + +CS   
Sbjct: 82  LACGYVEVDPPVLNLSKQKGNMSVDCGVLHRGDASDKREWDLNHGLKAAGFGSLFCSCYK 141

Query: 136 DVARIRIGLMLLFPKGRIIL-RDRLWEIGLLAAYQANMFKSYDVHWG------KDFELTG 188
           D       + L +    +        E+ L +A   +  +   V  G      +   LT 
Sbjct: 142 DATGYDRFVTLAYDGHHLEDQPASQVELQLFSALLVSTIERDTVAPGNGYQPVRPSPLTQ 201

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           R+ E L+ ++EG  +  IA  LG+S   V+ + A+  +     TR  A+A A+    +
Sbjct: 202 RQREVLSLLAEGMMTARIAETLGLSEAAVSLHFANARKALGASTREHALALALTRGFI 259


>gi|332299624|ref|YP_004441545.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176687|gb|AEE12377.1| transcriptional regulator, LuxR family [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 201

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
           I L+   +    +S +    K   L+ RE E +TW++ G T+ EIA +L +S +TV  + 
Sbjct: 109 IQLIQEAEQPDTESLESEEAKQTPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHR 168

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
            +I  K    + SG   YA+ NN++
Sbjct: 169 RNIAAKLDIHSPSGLTIYALMNNLI 193


>gi|284034127|ref|YP_003384058.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283813420|gb|ADB35259.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 971

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 4/198 (2%)

Query: 51  ALTEYVGASHFLLVRWDL-FQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTEL 108
           A  E V     LL       ++      V        +  +    +   +   +  PT  
Sbjct: 775 AAAELVARGQDLLADGHATAEKGLPPGRVLGVEGIAWLARLEAEWERLRWLAGIDPPTAE 834

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                     +      +  +  S       +R    +     +  L         L A 
Sbjct: 835 EHVATWQRTVDAFGFGYVSEQAWSRLRLSDALRAAGRVADANEQAQLAAETAR--ELGAK 892

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT RE E L  ++EG+T+ ++A  L IS  TV+ ++++I+ K 
Sbjct: 893 PLLEELGSAAEPAGAAALTARETEVLALLAEGRTNRQLARELYISEKTVSVHVSNILAKL 952

Query: 229 ATKTRSGAIAYAVRNNIV 246
             ++R+ A A A R+ ++
Sbjct: 953 GVRSRTEAAAVARRDGLL 970


>gi|229193374|ref|ZP_04320323.1| Two-component response regulator ComA [Bacillus cereus ATCC 10876]
 gi|228590088|gb|EEK47958.1| Two-component response regulator ComA [Bacillus cereus ATCC 10876]
          Length = 213

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 15/222 (6%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D           +     M A          +      F    LD  + +    
Sbjct: 3   RVLIVDDHQIVGEGTKNMIELEEDMQAEYILNEQEALIKSDATPFDVYLLDMNMPNCSGI 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L + +          ++      +   F+ L  +        +   S +     + + +
Sbjct: 63  ELAQKI--LHIQTDAKIILYTGFEYVSQFNLLINS------GISGIISKSASQQELLMAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                   ++    L ++                   K   LT +E+E L  +S+G ++ 
Sbjct: 115 RAAVNGYTLLPISLLRQL-------RKDDIMTQQLENKTALLTQKELEILESVSKGSSNK 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +IA  L +S   V   +  I +K    +RS A+  A+R  I+
Sbjct: 168 QIADELYMSSRAVEYNLTKIFKKLKVGSRSEALTEAMRQGIL 209


>gi|83644295|ref|YP_432730.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
 gi|83632338|gb|ABC28305.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
          Length = 902

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                P            A           +       L++   +           I  L
Sbjct: 764 LAQARPSSAREFLTQAVNAAAPLGVRRPFREEITFLQPLLMDMARRG----QATTFISEL 819

Query: 166 AAYQANMFKSYDVHWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           + Y A   +    H       EL+ RE   L  +S G++++EIAV L I+ +TV  ++ +
Sbjct: 820 SVYSAPQTRPQRNHSNSPLMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKTHLRN 879

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I  K   + R+ A+A A    +V
Sbjct: 880 IYAKFGVRRRTQALAIAREKGLV 902


>gi|15596594|ref|NP_250088.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|9947343|gb|AAG04786.1|AE004569_4 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
          Length = 210

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 35/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R    AR+                              + 
Sbjct: 4   RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLADE--------------GEQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD         +++  +             R T +   +               +
Sbjct: 50  PDSLILDLRFPGLTRIEMLADLRRR--------FPRTTLIVVSMVDDPQLIGEVMNAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   ++ +     ++  +    + L                 +   LT 
Sbjct: 102 GFLGKSIAPEELGQAILAIRAGEVLVRYEPSGLLPL-------------QPSPRLEGLTE 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 149 RQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 218

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMF 173
                              T +   +  G+ LL        RD +   +  +  +  +  
Sbjct: 83  NPELANRALLSGIRGVFYTTDNADVLMKGIRLLLEDQLWYRRDIMCNALNRMLQFNKDAL 142

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
                   +  +LT RE   ++ +S+G  + EIA  L IS +TV  ++ S  RKT  + R
Sbjct: 143 HKLTEGDIEPVKLTKREKAIISLMSKGSKNKEIAEDLSISPHTVKTHLYSAFRKTKCRNR 202

Query: 234 SGAIAYAVRN 243
              +++A +N
Sbjct: 203 IELLSWAQQN 212


>gi|167765400|ref|ZP_02437513.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
 gi|167697028|gb|EDS13607.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC
           43183]
          Length = 256

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +G+M +    R +   +   + L      + + S ++      ELT RE+E L  I +
Sbjct: 153 LILGVMDIASDQRPLDGVKCTVLNLKTGELFSPYTSAEIKP----ELTNREIEILQLIKQ 208

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G  S EIA  LG+S +TVN +  +++RK   +    AI    +  ++
Sbjct: 209 GLLSKEIAYTLGVSIHTVNIHRQNLLRKLGVQNSIEAINIGSKTGLI 255


>gi|28198191|ref|NP_778505.1| LuxR/UhpA family transcriptional regulator [Xylella fastidiosa
           Temecula1]
 gi|182680826|ref|YP_001828986.1| two component LuxR family transcriptional regulator [Xylella
           fastidiosa M23]
 gi|28056261|gb|AAO28154.1| transcriptional regulator LuxR/UhpA family [Xylella fastidiosa
           Temecula1]
 gi|182630936|gb|ACB91712.1| two component transcriptional regulator, LuxR family [Xylella
           fastidiosa M23]
 gi|307579294|gb|ADN63263.1| two component LuxR family transcriptional regulator [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 210

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 71/235 (30%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ I++  +     + V  +   +   A+++      +    + A             
Sbjct: 1   MSEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 49  --PQTELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +                          ++      K  
Sbjct: 99  FGAAGFIPKSSPPETITEVVAAVLDGCTWFPP-----------MLVECSEADTQLAVKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 RLTPQQFRVLLCLADGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAAVL 202


>gi|325290812|ref|YP_004266993.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966213|gb|ADY56992.1| two component transcriptional regulator, LuxR family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 226

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 75/234 (32%), Gaps = 16/234 (6%)

Query: 8   VNIVLNRE--DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           +++ LN E  D+ +   + H  + ++    ++ ++  ++         E +         
Sbjct: 1   MSLSLNEEIPDQIKVLILDHHTSFAEGTVSLLAVEPRITVVGVAKNENECLEF------- 53

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D ++       L R   +    +  +       +     +     +T    
Sbjct: 54  ---VNTADPDVVLLDSCSLKLSRTDFIGRMKQINS---HLKVIILTDLNPAAFILTYGDK 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +      V  +   +  ++    +   + L           N       +      
Sbjct: 108 GVAGFLLKDCSVREMIQAIFRVYEGETVFS-EGLETSPRSLINNNNFKVPLVANKSMFQL 166

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T REVE    +++G  + EIA  LGI + TV+ +I +I +K    TR  A+  
Sbjct: 167 FTSREVEVARLMNKGLQNKEIAAALGIKKRTVDLHIRNIQKKLKVTTRLEAVVK 220


>gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301]
 gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301]
          Length = 281

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           K + L+ RE+E + W+ +GKT  EIA+IL IS+NTV +++  +  K     R+ A+A 
Sbjct: 220 KSYNLSVRELEIIDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVAK 277


>gi|294666588|ref|ZP_06731828.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603663|gb|EFF47074.1| transcriptional regulator luxR/uhpA family [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 213

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 72/235 (30%), Gaps = 32/235 (13%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + I++  +     + V H+  ++      +    + +    M               
Sbjct: 1   MADLTILVADDHPLFRAAVIHVLQQTLPPQANVVEASSAATLSAMLR------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +  + +  +     V+   +     V     +      
Sbjct: 48  SHPQAELVLLDLAMPGARGFSAL--LHVRGEHPDIPVVVISSNDHPRVIRRAQQ------ 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     I   +  +   G                  A   ++      K  
Sbjct: 100 FGAAGFIPKSTPAESIGTAVASVLEGGTWFPP-----------MTAERSEADAQLASKLA 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 149 QLTPQQFRVLLSLADGLLNKQIAHELGLAENTVKVHVTAILKKLDCYSRTQAAVL 203


>gi|257486234|ref|ZP_05640275.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289626569|ref|ZP_06459523.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650161|ref|ZP_06481504.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867642|gb|EGH02351.1| LuxR response regulator receiver [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330888268|gb|EGH20929.1| LuxR response regulator receiver [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989289|gb|EGH87392.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010548|gb|EGH90604.1| LuxR response regulator receiver [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 208

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +                 LA       ++ 
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQA------LACAVREDGQTN 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    
Sbjct: 141 ELELFKLVN--DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVEL 198

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 199 IEMAKRNALV 208


>gi|170721498|ref|YP_001749186.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida W619]
 gi|169759501|gb|ACA72817.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida W619]
          Length = 209

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 53/174 (30%), Gaps = 27/174 (15%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      D    M     +           +    +  +P ++        
Sbjct: 48  PSCLILDVRLKGASGLDFQARMDDLRVNI--------PVIMMTAYGDIPMSVRAMKAGAL 99

Query: 129 RYCSLTFDVARIRIGLMLL--FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +  F    +   ++      + R +  + + E+                   +   L
Sbjct: 100 GFLTKPFRDQDLLDAVVEALEHDRQRRVSEEGIIEL-----------------RERHNRL 142

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + RE E +   + G  + +IA  LGIS  TV  +  S MRK    + +  +  A
Sbjct: 143 STREQEVMAMATTGLLNKQIAAELGISEVTVKIHRGSAMRKMNAGSFAELVRMA 196


>gi|78213620|ref|YP_382399.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198079|gb|ABB35844.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 233

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 72/231 (31%), Gaps = 11/231 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTV--SWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            R     H P        +   D  +       +  +   VGA+               D
Sbjct: 1   MRDLPQRHRPLLEGRRIVVASADRVLISGLVHSLNGIGSLVGAASTEAEALACLSHTAAD 60

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            ++ SD          ++        L+    +  P+  T+              CS   
Sbjct: 61  LLICSDQLERGNGPSLVAAAKAQQPSLRCLMLIQRPLLSTIH---AAAKAQCEGLCSHER 117

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 + ++         +         +A    +   S D        L+ RE + L 
Sbjct: 118 IGNGGLLSVLRAMESDGSHMDSV------IAGVANHDRGSRDAAHPLSDVLSLREEDVLR 171

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + +G ++ EIA  L +S  T  + +  ++RK   K+R+ A+  A + N+V
Sbjct: 172 GLCKGLSNQEIADQLHLSIETTKHCVTGLLRKLDAKSRTQAVLIAFQRNLV 222


>gi|238786888|ref|ZP_04630689.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
 gi|238725256|gb|EEQ16895.1| Two component transcriptional regulator, LuxR family [Yersinia
           frederiksenii ATCC 33641]
          Length = 217

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++ + +VL  + +   + + +   +   +  +     +      +               
Sbjct: 2   MKMLRVVLLDDHKVVLAGMKYYLEQIPGIIVVNTFTQSADLIRHVT-------------- 47

Query: 65  RWDLFQEQKLDSIVS-SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
             D       D  +   +   D ++ +    +      L   T +  P+  +   +    
Sbjct: 48  -GDPPDVIITDYNMPKDEEYKDGLKFVGYLLRMFPDIKLLVLTMISNPMIVSALYDQ--- 103

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               +        +  +   L  L    R        E            +       + 
Sbjct: 104 --GVSGVVLKQDPLDEMASALRALRANNRYYPPSFQSE--------GRRDEREIFLRERI 153

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE E L +  EG +   IA  L  S  TV+    S MRK    +    I + + N
Sbjct: 154 NSLSPREFEVLRYFVEGDSISHIAERLNRSAKTVSLQKNSAMRKLNVDSSQELIRFCIGN 213

Query: 244 NI 245
           +I
Sbjct: 214 HI 215


>gi|269126698|ref|YP_003300068.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311656|gb|ACY98030.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 229

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 52/223 (23%), Gaps = 10/223 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            ++ +  L    D L R+                    GA               +D  +
Sbjct: 1   MSAPIRILIVDDDALVRLGLSMMLAGAEDLQIVGEAADGAEALAAAGELRPDVVLMDIRM 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                      +                 +    F T    +         +        
Sbjct: 61  PRMDGLTATERLRARRDPPE--------VIIMTTFDTDEHILRAMRVGACGFLLKHTPPP 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF--ELTGREVECLTW 196
           +I   +  +     II    L  +       A           +     L+  E      
Sbjct: 113 QIVQAIRQVAAGEPIISPSVLRRLMNYVGDLAAAPPDPRRERARAALQRLSPGERAVALL 172

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I +G+++ EI   L +S  TV  Y++ ++ K     R      
Sbjct: 173 IGQGRSNGEIGRELSMSVATVKAYVSRVLTKLDLNNRVQVALL 215


>gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
 gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970]
          Length = 238

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 77/206 (37%), Gaps = 16/206 (7%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVL--QRPTELFCPVFH 114
           G S F  V  +++   +       ++          ++  K   V+  +   +L   V+ 
Sbjct: 33  GFSFFSFVIREIYPITESRIYTFDNYNDSWRTLYEKNKLWKIDPVIFYKPMPQLEYAVWD 92

Query: 115 TLP-------ENITPPAGMDNRYCSLTFDVARIRIGLML------LFPKGRIILRDRLWE 161
           +L               G  +               L L      + PK   + +    +
Sbjct: 93  SLFFKGHEEIWAYGVEYGYQSGITFGMPLPQGYHSILSLSNMSHSITPKEISLAQSYFSK 152

Query: 162 IGLLAAYQANMFKSYDVHWGKD-FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
           I +       +     + + K+   LT RE+  L +  +G TS EIA  + IS++TV+ +
Sbjct: 153 ICVKIINSIILNAESPITFNKNNITLTKRELMILMFSVDGMTSHEIAGKIFISKSTVDFH 212

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           + +I++K   K +  AI+ A+   ++
Sbjct: 213 MLNIIKKLNCKNKFQAISKALIMGLI 238


>gi|256423122|ref|YP_003123775.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256038030|gb|ACU61574.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 208

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 44/167 (26%), Gaps = 10/167 (5%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
           K D ++             L      +  ++         +              + + S
Sbjct: 47  KFDLVILDIDMPGGNNHQMLDVIRLRHPDIRILIFSS---YDEQIFGWRYLEAGADGFLS 103

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
               +  I+     L    + +       +        N F +          L+ RE  
Sbjct: 104 KKTGIEEIKNAAKTLLRDEKYLSPTLKQTL-------LNNFTNKKSATNPIQRLSSRENN 156

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  + +G +  EIA  L +  +TV+ Y   I  K         I  
Sbjct: 157 IMQLLIKGSSVAEIADKLSLQISTVSTYKKRIFEKLQVSNVIEMIEK 203


>gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8]
 gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter
           aquaeolei VT8]
          Length = 301

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 32/223 (14%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+     ++LLARM         T       +  G + F + R           +  
Sbjct: 106 VDYVTKPIDTTELLARMAVHLANARMTRSARCALDTAGQNLFAVDREGNLLWGTPQ-VCR 164

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
              P D      + E+ + +   +       P+   L +       +          V  
Sbjct: 165 CLPPPDHEDFQGVREQLEDWLGHRPDPGHSLPI--RLLDTPRSIEYLAL--------VDG 214

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
               L L  P+ +      L E                      F+LT RE + L WI+ 
Sbjct: 215 QEYLLRLKTPQNQNSASAALRE---------------------RFDLTLRESDVLLWIAN 253

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           GKT+ EI  IL +S  TVN ++  + RK   + R+ A A A+R
Sbjct: 254 GKTNREIGQILEMSPRTVNKHLEQVFRKMNVENRTAAAANAIR 296


>gi|325972490|ref|YP_004248681.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027728|gb|ADY14487.1| two component transcriptional regulator, LuxR family [Spirochaeta
           sp. Buddy]
          Length = 203

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 23/182 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA     ++        LD  +      +  + +           ++         + TL
Sbjct: 35  GAQALSFLQKQSVDLVLLDIQMPVMDGIEAAQRIRAEF-----PPIKILMLTTFADYRTL 89

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +       + +   +    +  + +  +     +I    L                 
Sbjct: 90  HRCLES---GASGFLLKSDSTEKQILTIKAVHQGLPVISEQALKSF-------------- 132

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                   +LT RE + L  +++G ++ EIA  L +S  TV N I+ ++ K   + R+  
Sbjct: 133 -SDDQLFSDLTQREQDVLMQLAQGLSNKEIATRLCMSEGTVRNMISVMLDKLDLRDRTQL 191

Query: 237 IA 238
             
Sbjct: 192 AI 193


>gi|298488284|ref|ZP_07006317.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157223|gb|EFH98310.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 212

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +  +  + DL   +            +                  
Sbjct: 1   MRVIVADDHPIFLIGLRVVLEQDDLATVVAEACNPDELLQVLAR---------------H 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGM 126
                  D ++  +   D +R +    +D     V+   T     +F ++ +        
Sbjct: 46  PCDVLVTDFMMPVELQNDGLRLLQRIHRDFPALPVIVVTTLSNAGLFQSMLDLN------ 99

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                S       +   +  +      +       +     Y  +     +       +L
Sbjct: 100 VRGLLSKASLAGELPAAIRGVQRGEFFVADSVRRVLIEARQYGPDALLPAE-------KL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + RE+E L  +S G T  +IA  L  S+ TV+    + MRK      +    Y   + +
Sbjct: 153 SPRELEVLRLLSAGHTVGQIAAQLNRSKQTVSAQKVAAMRKLGLANDAALFIYLQESGM 211


>gi|271964121|ref|YP_003338317.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507296|gb|ACZ85574.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 489

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 18/230 (7%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R             L  ++  +                G      VR        +D 
Sbjct: 271 ALRIVVADDQALVRTGLRVVLDSEPGFDLVAEAED-----GEQAIAAVRETSPDLVLMDI 325

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +         R +   +             +    F T            + +   T  
Sbjct: 326 QMPRLDGLTAARRILADDSPP--------KVIMMTTFGTDDNLYAALRAGVSGFVLKTSA 377

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             ++   +        +I       +  +A++     ++          L   E++ +  
Sbjct: 378 PEQLISAMRAAQAGDALIDPAVTTRL--IASFAG---RTDPSAPPGLAGLGDTELDLMKL 432

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++ G T+ +IA  L +S  +V+  ++ ++       R+  +  A  + +V
Sbjct: 433 VARGLTNRQIAATLSVSERSVSQSVSKLLEHLGLFDRAQLVVSAYESGLV 482


>gi|291287073|ref|YP_003503889.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884233|gb|ADD67933.1| two component transcriptional regulator, LuxR family [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 193

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  LT RE E L  I+ GKTS EI  +L IS+NTV+ +   +++K      +  + YA 
Sbjct: 129 RNGSLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKLNLANSASLVHYAF 188

Query: 242 RNNIV 246
            + +V
Sbjct: 189 VSGLV 193


>gi|197335562|ref|YP_002157169.1| two-component response regulator [Vibrio fischeri MJ11]
 gi|197317052|gb|ACH66499.1| two-component response regulator [Vibrio fischeri MJ11]
          Length = 209

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   + D+  +   L  +           +               + D    K   
Sbjct: 101 GAFGFIPKSSDMKSLIGALNQILAGDSYFPVGAIKN-----------SAACDDLATKIAA 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT ++ + L  +S+G  + +IA  L +S  T+  ++ +I RK   K R+ A+  
Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYDLEVSEATIKAHMTAIFRKLGVKNRTQAVIL 203


>gi|69249446|ref|ZP_00604982.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257880327|ref|ZP_05659980.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257894240|ref|ZP_05673893.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260562369|ref|ZP_05832883.1| regulatory protein [Enterococcus faecium C68]
 gi|293553074|ref|ZP_06673716.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|293559445|ref|ZP_06675983.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|293568332|ref|ZP_06679655.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|294618821|ref|ZP_06698347.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|314937987|ref|ZP_07845298.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314941587|ref|ZP_07848471.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948427|ref|ZP_07851815.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314951384|ref|ZP_07854436.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314995348|ref|ZP_07860454.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194157|gb|EAN08690.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus
           faecium DO]
 gi|257814555|gb|EEV43313.1| regulatory protein [Enterococcus faecium 1,230,933]
 gi|257830619|gb|EEV57226.1| regulatory protein [Enterococcus faecium 1,231,408]
 gi|260073293|gb|EEW61634.1| regulatory protein [Enterococcus faecium C68]
 gi|291588941|gb|EFF20766.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|291594944|gb|EFF26295.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291602783|gb|EFF32993.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|291606600|gb|EFF35996.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|313590441|gb|EFR69286.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313596442|gb|EFR75287.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313599607|gb|EFR78450.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642662|gb|EFS07242.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313645152|gb|EFS09732.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 209

 Score = 87.3 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 15/185 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              +L           D  +      D  + +             +   L    F     
Sbjct: 38  DALVLYETHRPDVLLTDIRMPKQTGIDAAKEILAK--------FPKAILLLLTTFKDEEY 89

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                +     Y     ++  I   +   +    +       EI            + D 
Sbjct: 90  IREAFSIGVKGYLIK-QNLQAIIPSVKSAYNGQAVFG----NEIIETFTQMMKNKPTIDS 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    F  + RE+  +  ++ GK + EIA  L +S  TV NYI+ ++ K   + R+    
Sbjct: 145 HAYASF--SERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAI 202

Query: 239 YAVRN 243
           Y  ++
Sbjct: 203 YFYQH 207


>gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
 gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2]
          Length = 74

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 12  LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70


>gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076576|gb|ADJ65975.1| response regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 66/228 (28%), Gaps = 29/228 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
           +RT FV       D + R   L    S     +            L          LD  
Sbjct: 2   ERTVFVVD----DDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPC--CLLLDMK 55

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +     F++VR +          V+        P        +       + + +     
Sbjct: 56  MPGSDGFEVVRRLERRGDAI--PVIFISGYGTIPTT------VQAMKAGAHEFLTKPIQD 107

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+   +                E   +A  Q      +     +   LT RE E L   
Sbjct: 108 ERLLGAV---------------EEALQIAERQLQSRTEHAACTSRLETLTPREREVLELA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             G  + +IA  LGIS  TV  +   +M K  TKT +  +  A R  I
Sbjct: 153 IGGLLNKQIATELGISEITVKVHKRRVMDKMQTKTLADLVRAAERLQI 200


>gi|83745854|ref|ZP_00942911.1| transcriptional regulator/response regulator LuxR family [Ralstonia
           solanacearum UW551]
 gi|207742983|ref|YP_002259375.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|300703908|ref|YP_003745510.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum CFBP2957]
 gi|83727544|gb|EAP74665.1| transcriptional regulator/response regulator LuxR family [Ralstonia
           solanacearum UW551]
 gi|206594380|emb|CAQ61307.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|299071571|emb|CBJ42895.1| two component transcriptional regulatory protein [Ralstonia
           solanacearum CFBP2957]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 39/235 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R            +                R + 
Sbjct: 14  TVFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLIDDK----------------RNEG 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   +          ++      F      +P  ++       
Sbjct: 58  VGCLILDVRMQGMSGPELQDRLLAENNRM--PIV------FVTGHGDVPMAVSTMKKGAV 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +       R++ + R  +         +  +           LT 
Sbjct: 110 DFIEKPFDESELRELV------ERMLSKARTED---------SAAREQKAALDLLSRLTT 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|88861227|ref|ZP_01135860.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
 gi|88816820|gb|EAR26642.1| putative transcriptional regulator, LuxR family protein
           [Pseudoalteromonas tunicata D2]
          Length = 218

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 1/133 (0%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQA 170
           +                     T +   +  G+ LL        R+ +   +  L  +  
Sbjct: 80  INENTELANRALLSGIRGVFYATDNADVVMKGIRLLLDNQLWYRRNIMCNALSRLLHFNK 139

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +          +   LT RE   +  +S+G  + EIA  L IS +TV  ++ S  RKT  
Sbjct: 140 DNILQLTDTLAEPISLTKREKAIIVLMSKGCKNKEIADELSISPHTVKTHLYSAFRKTKC 199

Query: 231 KTRSGAIAYAVRN 243
           + R   +++A +N
Sbjct: 200 RNRIELLSWAQQN 212


>gi|312199930|ref|YP_004019991.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311231266|gb|ADP84121.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 63/220 (28%), Gaps = 27/220 (12%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSSDWPF 84
           R++  D    +   +  L   +GA+                        +D  +      
Sbjct: 5   RIVIADDHELFRDGLRGLLVELGATVVAEAADGNAALAATLRHAPDVVFMDLRMPGLSGI 64

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +    +          V  +   L   +                 Y         +   L
Sbjct: 65  EATARIGE--------VAPQTAILVLTMSEDTASLQAALQAGARGYLLKESSKKDVARAL 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +     +I      ++               +  G   +LT  EV  L  +++G  + 
Sbjct: 117 EAVTRGELVIGPGIADKV---------RHAVGGLSPGVFPQLTEAEVRMLELLADGLANG 167

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ++A  L +S  TV N +++I+ K    +R+ A+A A    
Sbjct: 168 QLAARLYLSEKTVRNRVSTILAKLGAGSRAEAVARARDAG 207


>gi|75812851|ref|YP_320468.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75705607|gb|ABA25279.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 262

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 23/232 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +   ++ ++R+                    G     LV         ++  +    
Sbjct: 4   INVVIIENENISRVGAATILSETGKIQVCGLAKTGKQGIELVDQQKPDIVVINIDLPDIN 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD----VA 138
             D++  +          V+         +           +   + Y            
Sbjct: 64  GTDVISLIKCK-HTSIKIVVMTANSSRDTIN-------AAISNGADCYYCKNNAREEVGE 115

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----TGREVECL 194
           R    +M  +     I       +        +  +S D       +L    + +E+  L
Sbjct: 116 RFIEAVMAAYNNESWIDPTINRILI-------DNLRSNDTADRDSLDLLSDFSNKEITVL 168

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G  ++EIA ++ +S  TV +Y+ +   K   K R  AI  A+R  I+
Sbjct: 169 KLAAGGMKNNEIANVMYVSEGTVRSYLHNSFIKLGVKDRLNAIREAIRLGIL 220


>gi|312886495|ref|ZP_07746104.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
 gi|311301123|gb|EFQ78183.1| transcriptional regulator, LuxR family [Mucilaginibacter paludis
           DSM 18603]
          Length = 263

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              ++   T RE   L +I+EG +S +IA  L IS NT+ N+  +++RKT  K  +  + 
Sbjct: 196 PHQEEAGFTKREKGVLVYIAEGLSSKQIADKLNISENTIVNHKQNMLRKTNAKNVTELVV 255

Query: 239 YAVRNNIV 246
            AVRN ++
Sbjct: 256 MAVRNRVI 263


>gi|224827162|ref|ZP_03700258.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224600671|gb|EEG06858.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 208

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 32/211 (15%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGA--------SHFLLVRWDLFQEQK-LDSIVSSDWPFDL 86
           +  +D   +    +  L +  G           FL            +D  +S      L
Sbjct: 6   LAVIDDDEAVRDSLIWLFDGQGFQTTGFDSAEAFLAGPGPAAFNALIVDLRLSGISGIVL 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +A                +       +P  +         +    FD  R+   +  
Sbjct: 66  LERLAEHPYCP--------PVIMLTAHGDVPHAVAALKLGAIDFMEKPFDDGRLLAMV-- 115

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                    +  L +         + F            LT RE E +  I  GK + +I
Sbjct: 116 --------DQALLRDQQE-----RDRFGRLSRLNQSLALLTEREREVMQLILAGKLNKQI 162

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           A  L IS  TV  + + +  K   K+     
Sbjct: 163 ADELAISMKTVEVHRSRVFDKMGVKSAVELA 193


>gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 781

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 12/221 (5%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
              +   +    +  + +        L    +   ++ D+  +      +V   +L +  
Sbjct: 561 AAREHLEAGLEALRRVGDPEEVRT-CLWFLIMLACERGDAAAARAHAARMVEGASLLQYR 619

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDN---------RYCSLTFDVARIRIGLMLL 147
               ++                 +      D                F    +      L
Sbjct: 620 YAAPLVLHAYARLAVEEGRPARALRLAGAADRLGRSIGTSVGPALRDFLRRGLEPAWAAL 679

Query: 148 FPKGRIILRDRLWEIGL--LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
             +      +    + L   AAY        +        LT RE+E L  + EG T  +
Sbjct: 680 GEERGRAAFEAGRALSLREAAAYALEEGPRGEERGPAGAPLTPRELEVLRLVGEGMTDAQ 739

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +A  L +S  TVN ++ SI+RK   ++R+ A+  A    ++
Sbjct: 740 VAGRLFVSTRTVNAHLRSILRKLGVRSRAAAVRLAQERGLL 780


>gi|260774008|ref|ZP_05882923.1| two component transcriptional regulator LuxR family [Vibrio
           metschnikovii CIP 69.14]
 gi|260610969|gb|EEX36173.1| two component transcriptional regulator LuxR family [Vibrio
           metschnikovii CIP 69.14]
          Length = 202

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 13/122 (10%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                  Y S    +  +   +  +    +    D +  +  +                 
Sbjct: 93  MQAGAYGYLSKETGLEELVTAMKAIAAGYKFF-PDCVTHLSTV------------QDQND 139

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE+    ++  G +++EIA  + IS  TV+ Y   IM K   K     I+ A R
Sbjct: 140 LSILSAREIVVFNYLVSGLSNNEIAEKMLISNKTVSTYKKRIMDKLNAKNIVDLISIAKR 199

Query: 243 NN 244
           NN
Sbjct: 200 NN 201


>gi|227819919|ref|YP_002823890.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Sinorhizobium fredii NGR234]
 gi|227338918|gb|ACP23137.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Sinorhizobium fredii NGR234]
          Length = 228

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 33/230 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR---------WDL 68
            R S    L +  D    +I +D   S    +  L    G                  D 
Sbjct: 8   LRRSLSPQLGSEEDEPLVII-VDDDASVRAALSELILSAGFRPVSFASTRELLDADTLDA 66

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +  +    L R +A +   K          +F      +P  +        
Sbjct: 67  PGCLILDVRMPGESGLHLQRHLADNGNPK--------PIIFLTGHGDIPMTVEAMKAGAV 118

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +       +   +      G  +  +R  E  +             ++  +   LT 
Sbjct: 119 DFLTKPVRDQTLLDAVTA----GIAMDAERRAEAAI-----------SRLNIERLETLTQ 163

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           RE E L  ++ G+ + +IA  LGIS  TV  + +S+M K    +    I 
Sbjct: 164 REREVLYEVARGRLNKQIAFDLGISEVTVKAHRSSVMHKMGAASVGELIR 213


>gi|224826678|ref|ZP_03699779.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
 gi|224601279|gb|EEG07461.1| two component transcriptional regulator, LuxR family [Lutiella
           nitroferrum 2002]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 66/239 (27%), Gaps = 42/239 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           Q  I +  +DE     +  L    D       ++C  S    +  +              
Sbjct: 6   QAPIHIIDDDEPFRDSLLWLLESHDY-----QVECHGSAEAFLGRVV------------L 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  +      +L   +          V+      F      +P  +      
Sbjct: 49  SGVGCLIVDIRMPGMSGLELFEELDRRGNPW--PVI------FITGHGDVPMAVQAVKRG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + +    F+   +   +                        + +   S      +   L
Sbjct: 101 AHDFLEKPFNQQALLDAVDSALAT---------------CRQRLDSTASLSKMAERLDSL 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AYAVRN 243
           T RE E L  + EGK +  IA  LGIS  TV  +   +M K   ++ +  +    A R 
Sbjct: 146 TIREREVLEKVIEGKMNKVIADDLGISIKTVEAHRGKMMDKMGARSIADLVQAVVAYRQ 204


>gi|256379381|ref|YP_003103041.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM
           43827]
 gi|255923684|gb|ACU39195.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM
           43827]
          Length = 213

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 33/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  E QQ+++VL+  D    + V+        +  + P D           + E + +  
Sbjct: 1   MIVEQQQLSVVLHATDSITRAGVTAALRARPEVRLVDPEDSARGEAQVALVVLERLDSDA 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L+R     E     +V+ D     +     S       V++R       +   L    
Sbjct: 61  QQLLRRLQVGEGPGIVLVAGDVADSDLLNAVSSGV---SAVVRRSEATPETLVRLLKATA 117

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                +         +         +   +  ++  +     G+                
Sbjct: 118 AGEGALPPDLLGKLLN--------RVSRLQRNVLHPNGWTMAGM---------------- 153

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                 + RE E L  I++G  + EIA  L  S+ TV + +  I  +   + R+ A+AYA
Sbjct: 154 ------SNRETEVLRLIADGYETREIAERLCYSQRTVKSILHDITNRFGLRNRAHAVAYA 207

Query: 241 VRNNIV 246
           +R  ++
Sbjct: 208 LREGLI 213


>gi|318608040|emb|CBY29538.1| transcriptional regulatory protein fixJ [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 205

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 32/213 (15%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFD 85
            +  +D        + AL   +G                         LD  +       
Sbjct: 4   HIYLIDDDEGVRAALNALLTTMGWEVNAFSNGQIFLDTFAITQPSCVLLDIRMPGKSGMT 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +                 +       +        G    + +   D   +   + 
Sbjct: 64  ILEAIQERNS--------ALPVIIMTGHGNVELCRRAFKGGALEFLTKPIDADVLIETVS 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +              E  L A  Q   ++          +L+ RE E    I +G+TS +
Sbjct: 116 MAL---------EQHEQSLTAHKQRESYQQL------FNQLSAREREVAALIIQGETSKQ 160

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           IA  L +S  TV  + A+I  K    + +  I 
Sbjct: 161 IAHTLSLSPRTVEAHRANIFAKLEVNSLALLIH 193


>gi|160888907|ref|ZP_02069910.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270293670|ref|ZP_06199872.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479365|ref|ZP_07938499.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
 gi|156861806|gb|EDO55237.1| hypothetical protein BACUNI_01327 [Bacteroides uniformis ATCC 8492]
 gi|270275137|gb|EFA20997.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904439|gb|EFV26259.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36]
          Length = 220

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 66/221 (29%), Gaps = 27/221 (12%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L  R    + ++  D       ++                        LD  +      +
Sbjct: 20  LLGRQKDTSLLLEADNKAELIQQLR---------------LHPTAVVILDYTLFDFSGAE 64

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
               M L E+ K  + L    EL  P    +  +                    I   L 
Sbjct: 65  --ELMVLHERFKEADWLLFSDELSLPFLRQVLFSSMAF-----GVALKDNSKEEILTALQ 117

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
               K R I       +        N   S      KD  LT  E   L  I+ GKT+ E
Sbjct: 118 CASRKERFICNHVSNLL-----LAGNGSSSPTHPTIKDDLLTTAERSILKEIALGKTTKE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    +S +TVN++  +I RK        A  YA++  IV
Sbjct: 173 IAAERNLSFHTVNSHRKNIFRKLGVNNAHEATKYAMKAGIV 213


>gi|116049343|ref|YP_791854.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390239|ref|ZP_06879714.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106385|ref|ZP_07792620.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115584564|gb|ABJ10579.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879122|gb|EFQ37716.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 35/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R    AR+                              + 
Sbjct: 4   RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLAGE--------------GEQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD         +++  +             R T +   +               +
Sbjct: 50  PDSLILDLRFPGLTRIEMLADLRRR--------FPRTTLIVVSMVDDPQLIGEVMNAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   ++ +     ++  +    + L                 +   LT 
Sbjct: 102 GFLGKSIAPEELGQAILAIRAGEVLVRYEPSGLLPL-------------QPSPRLEGLTE 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 149 RQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|163839801|ref|YP_001624206.1| LuxR family two-component response regulator [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953277|gb|ABY22792.1| two-component response regulator, LuxR family [Renibacterium
           salmoninarum ATCC 33209]
          Length = 67

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    I++G ++ EIA  L +S  TV  ++  I+ K   + R   +  A    
Sbjct: 4   LTAREHELFLLIAQGYSNPEIASNLFLSEATVKTHVGHILSKLGARDRVQIVVIAYETG 62


>gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
 gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Burkholderia ambifaria MEX-5]
          Length = 891

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 69/246 (28%), Gaps = 17/246 (6%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV---RWDLFQEQ 72
           +  R   +      +     +   +    W              +  L       L  + 
Sbjct: 647 ERARVLLMQGHVRAA--KEEIARAEDPAMWERVGRLHLIGNDFDYLELAQLRWEALAGDA 704

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF-CPVFHTLPENITPPAGMDNRYC 131
           +  +        D VR        K   +     +    P            +     Y 
Sbjct: 705 RAAAARLHAAVDDAVRVGRQRRAMKLRLLCALAHQRAGEPAAALAVMGALLKSACAEGYA 764

Query: 132 SLTFDVARIRIG--LMLLFP---------KGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
            +  D    RIG  L  +           +   +             +  +   +     
Sbjct: 765 RILLDEGGARIGPLLRQVARTREASATATRDPALTEYVTRLTQACGDFDESEDSTAGARP 824

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT +E+  L  ++EG ++  IA  L +S +TV  ++ +I  K    +R+ A+A +
Sbjct: 825 QLLDPLTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKVGAHSRTQAVAIS 884

Query: 241 VRNNIV 246
            R  ++
Sbjct: 885 RRLGVI 890


>gi|160891745|ref|ZP_02072748.1| hypothetical protein BACUNI_04200 [Bacteroides uniformis ATCC 8492]
 gi|317478188|ref|ZP_07937356.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156859152|gb|EDO52583.1| hypothetical protein BACUNI_04200 [Bacteroides uniformis ATCC 8492]
 gi|316905640|gb|EFV27426.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 72/232 (31%), Gaps = 36/232 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  L ++ + +       C                     L   + 
Sbjct: 9   RILVIDDHPIVAEGIIALASQLEGVT-CKGATCAKDVEQ---------------LTLKER 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD- 127
           F    +D  +     F L+  +          +L              P  I   + ++ 
Sbjct: 53  FDLCIIDLELPDMNGFQLISHLHSQ--IPECGILIYTMH-------EEPWIIAKLSTLNI 103

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N   S     + +R  +  L    R    +   E+           +  +       EL+
Sbjct: 104 NGAVSKNASTSELRDAISTLKNGTRYFS-NVFSEL---------DKEKQNTLPHALPELS 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            RE E L ++S+G ++ EI+ +L +S NT+  Y   +M K   K  +  +  
Sbjct: 154 RREKEVLAYLSQGLSTSEISQLLFLSINTIQTYRKRLMEKLEAKNVAELVYK 205


>gi|330814969|ref|YP_004358674.1| LuxR family DNA-binding response regulator [Burkholderia gladioli
           BSR3]
 gi|327367362|gb|AEA58718.1| LuxR family DNA-binding response regulator [Burkholderia gladioli
           BSR3]
          Length = 218

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 58/240 (24%), Gaps = 31/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ ++L+ +     S V H   R   +  +            +                 
Sbjct: 2   KIRVILSDDHPTVLSGVRHELARVPTVEIVGSALGADELLALLER--------------- 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D  +      D +  +                 +                  
Sbjct: 47  SHCDVLITDYAMPGGAAVDGLPLLRQLRLGW-----PAMKVVVLTTIDNPALLKEIAKTG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                S   +V  +      ++            ++ + A+                  +
Sbjct: 102 VQGLLSKIDEVDHLIAATHAVYAGANYQSPSVREKLAVQASSARA-----------VETM 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T +E E +     G +  EIA  L  ++ TV+    S MRK   +  +    YA    +V
Sbjct: 151 TTKEAEVIRLYVSGLSISEIAAQLNRAKQTVSAQKGSAMRKLGIERDADLFQYAYETGLV 210


>gi|326386722|ref|ZP_08208343.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208775|gb|EGD59571.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 211

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 60/225 (26%), Gaps = 26/225 (11%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGAS----------HFLLVRWDLFQEQKLDSIVS 79
           S  + R++  D    +   +  +   +G +              V+        LD  + 
Sbjct: 3   SPGMLRIVIADDHAFFRAGLEQVLGSLGFAVVASVGDGDAALAAVKEHHPDLVILDVRMP 62

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                ++++ +                 L           ++      N       +   
Sbjct: 63  VRDGGEVLKALRAKG--------DATPILILAAEIDDDRLVSAVRAGVNGIVFKDTEAGA 114

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +R  +  +    R I    +     L +                  L+ R+ + +   + 
Sbjct: 115 LREAIGTVMAGERAIAVSVMERAFTLVSE--------PRGPSLLESLSERDRKIVEGAAA 166

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           G  + EIA  LGIS  +V  Y+  I  +     R+          
Sbjct: 167 GLRNREIAERLGISEGSVKIYLHRIFDRLHVSNRTELALLVRTKG 211


>gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4]
 gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4]
          Length = 295

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 6/186 (3%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
               L ++ + D ++                 +     L     L      T        
Sbjct: 90  AAMQLCEQVRPDVVILDSALDPNCHL--AKLLNAGDPAL-VLVTLVRDTNRTQQYLAAAI 146

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
               +       D  R+   +       R I               +      D    + 
Sbjct: 147 GAGAHAIVPRAVDSRRLAEAVRRAHHDRRYIDPALSALTARPKREPSPRAAPVDGQLVQP 206

Query: 184 ---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                L+ RE + L  ++EG  +  IA +L +S  TV  ++ SI+RK + + R+ A+  A
Sbjct: 207 KGAMPLSRREYQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIA 266

Query: 241 VRNNIV 246
            R+ I+
Sbjct: 267 FRSGIL 272


>gi|257885374|ref|ZP_05665027.1| regulatory protein [Enterococcus faecium 1,231,501]
 gi|257821230|gb|EEV48360.1| regulatory protein [Enterococcus faecium 1,231,501]
          Length = 209

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 15/185 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              +L           D  +      D  + +             +   L    F     
Sbjct: 38  DALVLYETHRPDVLLTDIRMPKQTGIDAAKEILAK--------FPKAILLLLTTFKDEEY 89

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                +     Y     ++  I   +   +    +       EI            + D 
Sbjct: 90  IREAFSIGVKGYLIK-QNLQAIIPSVKSAYNGQAVFG----NEIIETFTQMMKNKSTIDS 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    F  + RE+  +  ++ GK + EIA  L +S  TV NYI+ ++ K   + R+    
Sbjct: 145 HAYASF--SERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAI 202

Query: 239 YAVRN 243
           Y  ++
Sbjct: 203 YFYQH 207


>gi|557022|gb|AAA50358.1| putative transcription factor; similar to E. coli NarL, Swiss-Prot
           Accession Number P10957 [Nostoc sp. PCC 7120]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 70/209 (33%), Gaps = 23/209 (11%)

Query: 49  MYALTEYVGASHFLLVRWDL-----FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQ 103
           M  + EY G  H+ +   D       + Q + ++     P   V    +          +
Sbjct: 21  MDKIGEYFGVQHWGIYLIDSESKADTETQSIPAVCLESNP---VGRYVVERH---APAHE 74

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP-KGRIILRDRLWEI 162
           +   +  P             G  +          R+   L             + L ++
Sbjct: 75  QL--ILTPEDWKDF-CPRHDHG--HVMTGPIICDGRLIGTLNFARDKGKPAFTANDLADL 129

Query: 163 GLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
             L  + +    +   +           LT RE++    +++G T+ EIA  L I++N+V
Sbjct: 130 SALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAELVAQGLTNAEIAEKLWITQNSV 189

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              +  + RK     R+  +A  +++ ++
Sbjct: 190 KQALKRMFRKLGVSARAEMVAR-LQDQLI 217


>gi|84387407|ref|ZP_00990426.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
 gi|84377660|gb|EAP94524.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01]
          Length = 227

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           LT RE +    +  G ++ EI+  L IS +TV  ++ +I +K     R  AI  A 
Sbjct: 159 LTKREAQIFKRVVRGDSNLEISSELFISESTVKTHVYNIYKKINVTNRKEAIRKAH 214


>gi|320328623|gb|EFW84625.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882548|gb|EGH16697.1| LuxR response regulator receiver [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 208

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +                 LA       ++ 
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQA------LACAVREDGQTN 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    
Sbjct: 141 ELELFKLVN--DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVEL 198

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 199 IEMAKRNALV 208


>gi|218531526|ref|YP_002422342.1| LuxR family transcriptional regulator [Methylobacterium
           chloromethanicum CM4]
 gi|218523829|gb|ACK84414.1| two component transcriptional regulator, LuxR family
           [Methylobacterium chloromethanicum CM4]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 64/225 (28%), Gaps = 18/225 (8%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH-FLLVRWDLFQEQKLDSIVSSD 81
           ++++    D                    + E   A+  + L +        LD  +   
Sbjct: 1   MTNILLVDDHPVVREGYRRLFERQPGFRVVAEAATAAEAYRLYKAQRPDLVILDLSLPGP 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              + +R +       +    +                    A   + Y S       + 
Sbjct: 61  SGIEAIRHIRQ-----WDGAARILVFSMRT---GAAIARQAFAAGASGYVSKASAPRELL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
                +    R +  D    I L                    EL+ REVE L   + G 
Sbjct: 113 AAAAGVLRGERAMSADIALAIAL---------DEVAGGRSSLDELSPREVEILGMTAAGA 163

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T+  IA  L +S  TV N ++ I  K   +T +  +  AV   +V
Sbjct: 164 TAQTIAEALCLSLKTVQNNLSLIRAKLGARTDAHLVWIAVGAGLV 208


>gi|150026109|ref|YP_001296935.1| two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772650|emb|CAL44133.1| Probable two-component system response regulatory protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 209

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 8/129 (6%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                       +   +  +  +   ++ +     I        + L++    +      
Sbjct: 89  YAPNAIKAGVFAFVQKSEKLDVLTSTIIKVNRGAVIFSDAVKKNMALISKQIKSERLYRK 148

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE+E L ++S GK + EIA  L ++  T++ Y   ++ K         +
Sbjct: 149 --------LSSREIEVLRYLSNGKKNKEIAEALHLNEKTISTYKLRLLAKLNVTNLVDLV 200

Query: 238 AYAVRNNIV 246
             A   +IV
Sbjct: 201 NKAKTLDIV 209


>gi|126736492|ref|ZP_01752233.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
 gi|126714030|gb|EBA10900.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Roseobacter sp. CCS2]
          Length = 254

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 73/249 (29%), Gaps = 36/249 (14%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL---- 74
            TS VSHL        ++                 E  G    +           L    
Sbjct: 1   MTSLVSHL-------EKLTNARTVEELWDVHSRQMETYGFDRLMYGFTRYRTSTGLGDPQ 53

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN------ 128
           D ++ S    + ++         +  +L+               ++     +        
Sbjct: 54  DWVLLSTQSPEYMKVFFDEGLYYHAPMLRWALANNGACSWRWMMDMNRVDNLTASERRVM 113

Query: 129 ----------RYCSLTFDVARIRIGLMLLFPKGRIILRDRLW-------EIGLLAAYQAN 171
                      Y      ++    G + L  K  +              EI +L      
Sbjct: 114 EFNKSMDVTAGYTVSFRSISERTKGAIALTAKAGMTQDAVEQTWTKHGEEIIVLNNVMHL 173

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
              +      ++  LT R+ E L W+ +GKT+ +IA++LG++  TV  ++         +
Sbjct: 174 KLLTLPYSGERN--LTKRQREVLQWVGDGKTTQDIALLLGLTPATVEKHLRLAREALDVE 231

Query: 232 TRSGAIAYA 240
           T + A+  A
Sbjct: 232 TTAQAVLKA 240


>gi|110833289|ref|YP_692148.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis
           SK2]
 gi|110646400|emb|CAL15876.1| DNA-binding response regulator, LuxR family [Alcanivorax
           borkumensis SK2]
          Length = 216

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 40/92 (43%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            I+  +  +   +L  Y              +  LT REVE L  ++ G  + +IA  L 
Sbjct: 124 AILDGELWFPRAVLQTYLMKSRTFNKTFSRSEVSLTDREVEVLKVMATGAKNSDIACSLN 183

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +S +T+  +I +I +K     R  A+ +A  N
Sbjct: 184 LSPHTIKTHIYNIFKKINASNRLQAVNWAQEN 215


>gi|254785114|ref|YP_003072542.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684126|gb|ACR11390.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 220

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM----DNRYCSLTFDVARIRIGLML 146
            L    KY   +Q   E                + +     +    +  +  ++  GL  
Sbjct: 65  DLENLSKYVREIQDSFESVTAALLNAEYESEQESLLEWPCVSGLFYVDTEQEQLIRGLKC 124

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L      + R       LL  +     K+       + +LT RE + L  I +G T+ +I
Sbjct: 125 LLDGDFWVPRR------LLHTFLDKNRKAPSNIKRPNVKLTKREKQILKLIKDGATNADI 178

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +  L +S +TV +++ ++ +K   + R  A
Sbjct: 179 SEALSVSEHTVKSHLYNVYKKIGVRNRLEA 208


>gi|134280958|ref|ZP_01767668.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           305]
 gi|134247980|gb|EBA48064.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           305]
          Length = 249

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D  A +  ++  +S +  +  +           L+  +       D  +     
Sbjct: 23  DLIVADDHPALVAGIEHALSRSNAIRVVGTASNSTELVDLLTCERCDILITDYAMPGGSH 82

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  ++   +            +            +          +    +  +   
Sbjct: 83  GDGLGLLSFLRRHHPD-----LKIIVFTAIDNPALIASMARLGARAIVNKMDHIDNLIAT 137

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     +          + A+ ++           + +L+ RE+E +     G + 
Sbjct: 138 VQAVYAGASCLP-------AGIGAFASSRLPVDGEAPEIERQLSARELEIVRLYVSGLSV 190

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L  S+  V+    + MRK   +  +G   YA    ++
Sbjct: 191 NEIAAYLHRSKQAVSTQKMNAMRKLGIERDAGLFRYAYETGLM 233


>gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira
           platensis str. Paraca]
 gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis
           NIES-39]
          Length = 105

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 41/69 (59%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D  +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R  
Sbjct: 2   SDSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVE 61

Query: 236 AIAYAVRNN 244
            + ++++  
Sbjct: 62  LVRWSLQWG 70


>gi|227874957|ref|ZP_03993108.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|227844477|gb|EEJ54635.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
          Length = 257

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I+   +D      +++L    D +  +   +                GA    ++   
Sbjct: 43  IRILFADDDRIIREGLANLLNHQDGITVVATAEN---------------GAQALKILATQ 87

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +         + +   +  K   V+    E       +L +N+       
Sbjct: 88  PVDVALIDVDMPVLDGIQTAQRI-AKQYPKLAVVILTAFEHEESFARSLEQNV------- 139

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +      R+   L       R+        +       ++    Y     +   L 
Sbjct: 140 RGFLTKDIPPDRLAEQLKRAHAGERVFGSRPTEMLTSNFLAASSNAPEYQYFRRRVEALP 199

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
               +    + E   +  IA  L +S NTV  Y++ +       +R+     A++   
Sbjct: 200 PYLRDVFDLVIEAYPNKTIARRLKLSENTVRTYVSELFVALDFTSRNQLTITALKAGY 257


>gi|212693876|ref|ZP_03302004.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
 gi|212663408|gb|EEB23982.1| hypothetical protein BACDOR_03398 [Bacteroides dorei DSM 17855]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212
             + +I  L  Y     K            + EL+ RE+E L  I++G  + EIA  L I
Sbjct: 116 SLIKDIHQLRQYGHQARKQAVDKAMHIEKTEHELSIREIEVLILITKGLINKEIADKLHI 175

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 176 SLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 209


>gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
 gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328]
          Length = 105

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 41/69 (59%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D  +     L+ RE++ +  ++ G T+ EIA  L IS+ TV+N+I++I+ KT+T  R  
Sbjct: 2   SDSKFKSPVSLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVE 61

Query: 236 AIAYAVRNN 244
            + ++++  
Sbjct: 62  LVRWSLQWG 70


>gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           aggregans DSM 9485]
 gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus aggregans DSM 9485]
          Length = 917

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG+++ EIA  L I+ +TV ++I +I  K    +R+ A+A   R  
Sbjct: 855 PLSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRLG 914

Query: 245 IV 246
           ++
Sbjct: 915 LI 916


>gi|29347298|ref|NP_810801.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572832|ref|ZP_04850231.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|29339197|gb|AAO76995.1| transcriptional regulator, LuxR family [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837564|gb|EES65656.1| transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 258

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I +G  S EIA  L +S +TVN +  +++RK   +    AI       
Sbjct: 196 PLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIEAIRIGYETG 255

Query: 245 IV 246
           I+
Sbjct: 256 IL 257


>gi|317503562|ref|ZP_07961584.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315665304|gb|EFV04949.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            + +   +    A M  +      +  +LT  E E L  I+ G T+ EIA     S +TV
Sbjct: 117 AIHDRRFICQRMAEMLLAPAQPQLEHVKLTPTETEILKDIALGMTTREIAEKRFSSFHTV 176

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           N +  +I RK    T   A  YA+R  ++
Sbjct: 177 NTHRKNIFRKLGVNTIHEATKYALRAGLI 205


>gi|296102698|ref|YP_003612844.1| two component transcriptional regulator, luxr family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057157|gb|ADF61895.1| two component transcriptional regulator, luxr family [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 203

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 56/206 (27%), Gaps = 18/206 (8%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +  +D   S    M  L   +G         D F                 +R       
Sbjct: 5   IWLIDDDESIRESMAFLLSGMGWPVRTFESVDAFTAAHARDTELVGCMLLDMRMPGKGGL 64

Query: 96  DKYYNV---LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
                          +      T+             + +   D  ++   + L F +  
Sbjct: 65  TWLEEGKWPWPLLPVIIMTGHGTVDACRRAFRNGVFEFFTKPLDADKLIETVGLAFEE-- 122

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
                        +  +   ++       +  +LT RE E L  + +G ++ E+A  L +
Sbjct: 123 -------------SQRRFAGWQETSRVKARFAQLTAREHEVLGELMKGLSNKEVAARLNL 169

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIA 238
           S  TV  + A+   K    +   AI 
Sbjct: 170 SPRTVEAHRAAAFTKLGVGSLVQAIR 195


>gi|78061706|ref|YP_371614.1| LuxR family transcriptional regulator [Burkholderia sp. 383]
 gi|77969591|gb|ABB10970.1| transcriptional regulator, LuxR family [Burkholderia sp. 383]
          Length = 301

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 59/272 (21%), Gaps = 39/272 (14%)

Query: 14  REDEQRTSFVSHLPTRS---------DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           RE   +  +   +              +   +     T   +  + +L    G S F   
Sbjct: 30  RERPVQVVWCDDVKRGDITQPHAPKLGVADTLAHAQSTAERSRIVASLLHLTGFSTFAYF 89

Query: 65  RWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--- 120
             +   E+     +   + P                           P+   L +     
Sbjct: 90  ALEFAHERVESLYLHEAFTPATYRGDYVRHNHHDIDPRTLGARVCNMPIVWDLQQLRREH 149

Query: 121 --------------------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRD 157
                                   GM +                M           I   
Sbjct: 150 RERDDGPRVTPAALDGFLQNMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITPA 209

Query: 158 RLWEIGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
            + +   +                       LT  E E L  I+EG +  EI   L  S 
Sbjct: 210 TIEQALSIGLSVHKFASPQLISTSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTSA 269

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + V+ ++  + ++     R        +  ++
Sbjct: 270 HNVDYHLRKLRKRFGVANRIQLTYLTSKLELI 301


>gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 68

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 35/58 (60%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L+ RE E +  I+EG T+ EIAVIL IS  TV  Y+ +IM K    +R   IA+  +N
Sbjct: 6   LSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIAWYYKN 63


>gi|227489258|ref|ZP_03919574.1| LuxR family response regulator [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227540847|ref|ZP_03970896.1| LuxR family response regulator [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227090789|gb|EEI26101.1| LuxR family response regulator [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227183379|gb|EEI64351.1| LuxR family response regulator [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ +++  +D   T  +      ++ +  +            +++             
Sbjct: 1   MDQIRVIVVDDDHIVTDTLERYFATTEDIVTVGTASNGSEALDVLHSTL----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +       L+R M               T +      +    +   +
Sbjct: 50  ----ADVIVADIHMPGMDGVQLLRAMKRMSHPP--------TFVAMTSLDSDEIMLEVLS 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                Y   + + + I   +      G ++  + +  +                      
Sbjct: 98  HGAAAYIIKSAEASFIIETVRQAAHGGTVVSPEPMSRLVGYLPTTHVAPPLVAE------ 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L   +   L  + +G ++ EIA   G S +TV   ++ ++      +R   +  A+R+ 
Sbjct: 152 DLPEAQRLILDLLCDGLSNSEIAEKSGYSESTVKKQVSKLIAHFGASSRLNLVVKALRSG 211


>gi|29829271|ref|NP_823905.1| LuxR family transcriptional regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606378|dbj|BAC70440.1| putative LuxR-family transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 1004

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 2/203 (0%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQ 103
            T     +  +   +  LL       ++  D           +               + 
Sbjct: 798 LTGDAATVRRWTDTAAELLELARTTADRGEDGTEQGPEGVAWLARAEAEWTRTVSGPDVV 857

Query: 104 RPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
              +      +  P           +                 +     ++    L +  
Sbjct: 858 VWEKAVTAFAYGDPYERARCRRRLAQALLAAGRREEAAEQARAVRETATLLGAAPLLDAV 917

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                                 LT RE + L  ++ G+T+ +I   L I+  T + ++++
Sbjct: 918 ETLVR-RGRLAETSPAADGTAVLTARENDVLRLLARGRTNRQIGEELFITGKTASVHVSN 976

Query: 224 IMRKTATKTRSGAIAYAVRNNIV 246
           I+ K +  +R+ A+  A R  ++
Sbjct: 977 ILAKLSAASRTEAVVIAYREGLL 999


>gi|91776114|ref|YP_545870.1| two component LuxR family transcriptional regulator
           [Methylobacillus flagellatus KT]
 gi|91710101|gb|ABE50029.1| two component transcriptional regulator, LuxR family
           [Methylobacillus flagellatus KT]
          Length = 311

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 25/211 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T +V+     +++LAR+           +     +  G +   ++            +  
Sbjct: 106 TDYVTKPIRTAEVLARINTHLQASRQMHQARGALDAFGQAAIAVMPKSG------RIVWQ 159

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    D ++    +       V         P+            G ++   ++     R
Sbjct: 160 TPLARDWMQRYFSAS--DIDPV------TLTPLAVLKWLANLREDGKESMPLTIVQGSGR 211

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   L  L  +              +   +     +      + F LT RE E L W  +
Sbjct: 212 LVFSLADLNAEE-----------QWIIILREESDAAQIEALMQTFGLTQRESEVLYWAIK 260

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           GKT+ +I  ILG S  TVN ++  +  K   
Sbjct: 261 GKTNRDIGDILGTSPRTVNKHMEHVFAKLGV 291


>gi|113971614|ref|YP_735407.1| two component LuxR family transcriptional regulator [Shewanella sp.
           MR-4]
 gi|113886298|gb|ABI40350.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. MR-4]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 66/232 (28%), Gaps = 28/232 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ + +  +     + ++    ++   A ++  +        +               
Sbjct: 1   MSQIKVAIADDHPLFRTALTQAVLKNVNTADVLEAENFQELITLVE-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +  +  F  +  +           +                      
Sbjct: 47  NNPDIELIFLDLHMPGNEGFTGLTLLQNHF-----PDIAVIMVSSD---DQPEIIRKAIN 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   +  + +I   +  +      +       +    A +            +  
Sbjct: 99  FGASAFIPKSASLTQISTAIATVLEGEVWLPEHTDINVDQQTAAEHQRLAK------QLA 152

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT ++   L  I+ G+ + +IA  L I   TV  ++++I+ K     R+ A
Sbjct: 153 QLTPQQYTVLASIANGRLNKQIAYDLDIKETTVKKHVSAILVKLEVYNRTQA 204


>gi|324325252|gb|ADY20512.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 75/222 (33%), Gaps = 10/222 (4%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D +A  +     +        +     A +   +    +    +D  + +    
Sbjct: 3   EVLIIDDHMAIGMGTKALIETEDICADVLFDS-AEYLSCITKKKYDVYLVDLFMPNLNGL 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           ++ + +   + D    ++        P F+ L EN        +   S T    ++   +
Sbjct: 62  EVTKGI--LKHDPDAAIIIYTGFDIEPHFNLLLENN------ISGIISKTASKEQMITTI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                K  +I      ++  +  + A      +        LT RE E L ++ +G T+ 
Sbjct: 114 RCAKRKEVVIPLGLFRQLR-IQQFSAKSLLQSEKTNELPITLTQREREILIFVQQGMTNK 172

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            IA+ L +S+ ++   +  +  K    +R  A+  A    I+
Sbjct: 173 NIALTLNLSQRSIEYTLTELFNKLRVSSRVEAVEKAKSLGIL 214


>gi|241663217|ref|YP_002981577.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12D]
 gi|309782581|ref|ZP_07677304.1| transcriptional regulatory protein FixJ [Ralstonia sp. 5_7_47FAA]
 gi|240865244|gb|ACS62905.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12D]
 gi|308918672|gb|EFP64346.1| transcriptional regulatory protein FixJ [Ralstonia sp. 5_7_47FAA]
          Length = 211

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 72/236 (30%), Gaps = 39/236 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R        S    +       G    +L     
Sbjct: 14  TVFVVDDDEAMRDSLTWLLEGNGYTVR-----TYRSAEEFLVDDKRGEGVGCLIL----- 63

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      +L   +          ++      F      +P  ++       
Sbjct: 64  ------DVRMQGMSGPELQDRLLAENNRM--PIV------FVTGHGDVPLAVSTMKKGAV 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +  +  K               A  + ++ +           LT 
Sbjct: 110 DFIEKPFDESELRELVERMLSK---------------ARSEDSVAREQKAAKDLLSRLTT 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  N
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSRN 210


>gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
 gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp.
           CCY0110]
          Length = 90

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 41/69 (59%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +     L+GRE++ +  +S G T+ EIA  L IS+ TV+N+I++I+ KT T+ R  
Sbjct: 2   TSAKFQNPVSLSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVE 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|300697517|ref|YP_003748178.1| LuxR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074241|emb|CBJ53786.1| Two component transcriptional regulator, LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 211

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 65/235 (27%), Gaps = 31/235 (13%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       V H+  R+     +                          LVR    Q
Sbjct: 1   MIADDHAVMRDGVRHILERAGDFEVVCEASDGTQVLQ---------------LVRDHRPQ 45

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +      DLVR +                 L   +                 Y
Sbjct: 46  VIVLDLSMPGRSGLDLVRQLNAEH--------PGVRVLVLTMHAEEQYVARAFRAGAAAY 97

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            +       +   L  +   G  +  D   ++              D        L+ RE
Sbjct: 98  LTKESAATELVTALKKVAQGGAYVSPDMAEKLA--------HSLHEDSVAQAHTRLSDRE 149

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E    +  G+   +IA  + +S  T++ Y   +M K    + +  + YA+R+ +
Sbjct: 150 MEVYRRLVRGEALTDIAPKVCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHQL 204


>gi|297538453|ref|YP_003674222.1| MalT-like ATP-dependent transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257800|gb|ADI29645.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Methylotenera sp. 301]
          Length = 258

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L+ RE+E + WI  GKT+ EIA IL IS+NTV +++  + +K     R+ A+A 
Sbjct: 197 TGLSVRELEIIHWIKSGKTNQEIATILDISQNTVKSHLKRVFQKMNVTRRAQAVAI 252


>gi|256424175|ref|YP_003124828.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039083|gb|ACU62627.1| two component transcriptional regulator, LuxR family [Chitinophaga
           pinensis DSM 2588]
          Length = 234

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 71/244 (29%), Gaps = 28/244 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              + +N+ +  +       + +     D +  +I          ++             
Sbjct: 1   MPAETINLAIVDDLLLFRKVLKNYLLEQDNINVLIQTSDISELFHKLKDF---------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                      LD  +S+    D++  +        Y  ++      C     L      
Sbjct: 51  -----PVDVLLLDVFMSNLNALDVLAFIRRE-----YPEIKVLIVSGCT---ELHLISEL 97

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y S T +   +   +++              ++   A Y     K  +     
Sbjct: 98  LDYGIHGYISKTDEPEELLQAILMASNNKLY-----CNKLLTEALYWNRQNKLGEHLQTS 152

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
             EL  RE + L  + + K + EIA  L +S  ++      +  K   ++  G + Y + 
Sbjct: 153 TVELNDREKKILQMLWDEKNNREIAEELFLSIRSIEKIRQDMKEKLGVRSTVGLLKYGIS 212

Query: 243 NNIV 246
             I+
Sbjct: 213 KKII 216


>gi|84497370|ref|ZP_00996192.1| putative two component response regulator [Janibacter sp. HTCC2649]
 gi|84382258|gb|EAP98140.1| putative two component response regulator [Janibacter sp. HTCC2649]
          Length = 245

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 75/211 (35%), Gaps = 15/211 (7%)

Query: 36  MIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           +  ++        + A+ E        + +  D+   + +D  +   +    +    L +
Sbjct: 21  LAVVNDHELIVRGVAAMLEPFKDVIQVVELDLDVPVTRPVDIALYDTFTRANLGSDDLDD 80

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
             +   + +     +           +      +     + D   +   L+ +  +   +
Sbjct: 81  LCENPGIGRVVLYAWQ---LNEDLVASALRRGVHGALPKSLDGEALVAALLAVHEQAIEV 137

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
           +            +  +   + +   G++F LT RE E +  ++ G ++ EIA    +S 
Sbjct: 138 IP-----------FVDDPDLASNSWPGREFGLTPRESEIIALVTAGLSNLEIAERTYLSI 186

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           N+V +YI S  R     +RS A+ + + + +
Sbjct: 187 NSVKSYIRSAYRTMDVTSRSKAVLWGIDHGM 217


>gi|289675088|ref|ZP_06495978.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
 gi|302185631|ref|ZP_07262304.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           642]
          Length = 208

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L              +  
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALTCAVR---------EDG 137

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
             +  + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T   
Sbjct: 138 QTNELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVE 197

Query: 236 AIAYAVRNNIV 246
            I  A RN +V
Sbjct: 198 LIEMAKRNALV 208


>gi|167571898|ref|ZP_02364772.1| capsular synthesis regulator component B [Burkholderia oklahomensis
           C6786]
          Length = 231

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 63/223 (28%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D  A +  ++  +S +  +              L+  +       D  +     
Sbjct: 4   DLIVADDHPALIAGIEHALSGSSAIRVAGTASNSTELVDLLACEPCDILITDYAMPGGSH 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  ++   +            +            +          +    +  +   
Sbjct: 64  GDGLGLISFLRRHYPD-----LKIIVFTAIDNPALIASMARLGVRAVVNKMDHIDNLIAS 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     I  D          + ++           + +L+ RE+E +     G + 
Sbjct: 119 VQAVYAGATYIPADVDA-------FVSSRMADDGQALSIERQLSARELEIVRLYVSGLSV 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L  S+  V+    + MRK   +  +    +A    ++
Sbjct: 172 NEIAAYLHRSKQAVSTQKMNAMRKLGIERDASLFRFAYETGLM 214


>gi|325264809|ref|ZP_08131538.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
 gi|324030101|gb|EGB91387.1| DNA-binding response regulator, LuxR family [Clostridium sp. D5]
          Length = 198

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
           K  D+   K    T RE E   W+ +GK++ +IA IL +S +TV  ++++I      ++R
Sbjct: 117 KESDMKILKGHGFTEREAEVTYWLCQGKSNGDIAYILNLSVSTVKKHLSNIFDNMGVRSR 176

Query: 234 SGAIAYAVRN 243
           S A+A A+  
Sbjct: 177 SAAVALALEM 186


>gi|301385099|ref|ZP_07233517.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061858|ref|ZP_07253399.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           K40]
 gi|302132157|ref|ZP_07258147.1| LuxR response regulator receiver [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331016190|gb|EGH96246.1| LuxR response regulator receiver [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 208

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++   +                   P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFSTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +                 LA        + 
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQA------LACAVREDGMTS 140

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           ++   K      RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T    
Sbjct: 141 ELELFKLVN--DRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVEL 198

Query: 237 IAYAVRNNIV 246
           I  A RN +V
Sbjct: 199 IEMAKRNALV 208


>gi|295084625|emb|CBK66148.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Bacteroides xylanisolvens XB1A]
          Length = 202

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 35/80 (43%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y      S          L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 118 GYPVKDMPSMPPAQPHQEILSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 177

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 178 KLGIKSVSGLTIYAVMNGYI 197


>gi|258652795|ref|YP_003201951.1| LuxR family two component transcriptional regulator [Nakamurella
           multipartita DSM 44233]
 gi|258556020|gb|ACV78962.1| two component transcriptional regulator, LuxR family [Nakamurella
           multipartita DSM 44233]
          Length = 144

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 17/142 (11%)

Query: 105 PTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
              +    F                Y       A +   +  +   GR +  +   +   
Sbjct: 20  TRVVILTTFARAGYLRRALDAGAGGYLLKDAPSATLAAAIRTVHAGGRAVDPELAADA-- 77

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                          W +   L  RE E L    +G ++ +IA  L +S  TV NY++  
Sbjct: 78  ---------------WSEPDPLADREREVLRLTEDGLSNADIARRLHLSEGTVRNYLSEA 122

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
             K     R  A   A     +
Sbjct: 123 THKLGAGNRIAAARQARERGWL 144


>gi|167646930|ref|YP_001684593.1| two component LuxR family transcriptional regulator [Caulobacter
           sp. K31]
 gi|167349360|gb|ABZ72095.1| two component transcriptional regulator, LuxR family [Caulobacter
           sp. K31]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 57/200 (28%), Gaps = 23/200 (11%)

Query: 46  TMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRP 105
           T      T   G +    VR        +D  +      ++   M          V+   
Sbjct: 26  TSGFAVTTHVSGTAFLREVRHLEPGCVLMDIRMPEMDGLEVYAAMVERGVTM--PVVVLT 83

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                 V       +         +    F+ A +   +   F +               
Sbjct: 84  GHGDVTV------AVRAMKAGAVDFIEKPFEKAVLLAAIEAAFER--------------- 122

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                               LTGRE + L  +++G  +  IA  LGIS  TV  + A++M
Sbjct: 123 LEDADGRAARAADAAVAVAALTGREQDVLKGLAQGLPNKTIAYDLGISPRTVEVHRANLM 182

Query: 226 RKTATKTRSGAIAYAVRNNI 245
            K   ++ S A+  A    +
Sbjct: 183 SKLKVRSLSEALRIAFSAGM 202


>gi|150377229|ref|YP_001313824.1| two component LuxR family transcriptional regulator [Sinorhizobium
           medicae WSM419]
 gi|150031776|gb|ABR63891.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           medicae WSM419]
          Length = 230

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 48/184 (26%), Gaps = 10/184 (5%)

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
            L   +       D  +        +  +          V                + ++
Sbjct: 45  RLSEREDVSLALFDLAMPGMQSVASLAAVRD--------VRPDLKVAVVSASSRRSDILS 96

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY-QANMFKSYDVHW 180
                 N Y         +   +  +      +       +                   
Sbjct: 97  ALTEGINGYVPKGLGATDLAEAVRAILHGSVYVPPSMAGRVSPAEEAKPPARVGEAPQGS 156

Query: 181 GKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  E LT R+ E L  + +G ++ EIA  L +   TV  ++A++ R    + R  A A 
Sbjct: 157 HRTIEFLTPRQREVLQLLVQGLSNKEIARKLKLGEGTVKIHMAALFRSLRVRNRQEAAAA 216

Query: 240 AVRN 243
             R 
Sbjct: 217 GARL 220


>gi|91223385|ref|ZP_01258650.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|91191471|gb|EAS77735.1| putative transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                +  V  I  G   +   G  + R  L ++ L   +             +  ELT 
Sbjct: 99  GILLRSASVTHICDGAEYVLKGGLWLPRMYLEKLVLNYRHANL------SEEQQHDELTC 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L  +  G ++ +IA  L +S +TV ++I  + +K    +R  A+     NN
Sbjct: 153 REKQILELLVYGISNQQIASRLFLSESTVKSHIYKLYKKLDVHSRHDAVKLVRMNN 208


>gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 333

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 21/222 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      +++AR+           +  +  +  G +   +   D         +  
Sbjct: 125 VDYVTKPIRPREVIARIAAHVRGARQARQARSALDAFGHAVITVRAGDG------RVLWQ 178

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    +L++ +  +          R      PV      +                +   
Sbjct: 179 TPLARELLQALDAT----------REAGTRGPVLSETLLDWMQAQA-----VLAATEQTG 223

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
             I L     +    L +   E   L     +  ++        F LTGRE E L W+++
Sbjct: 224 YPIVLAREGRRVSFALHEATGEDEWLLVLTESNDRASIEGLAVAFRLTGREAEVLHWVAQ 283

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           GKT+ +I  ILG S  TV+ ++  +  K   +TR+ A A A+
Sbjct: 284 GKTNRDIGDILGTSPRTVHKHLEHVFAKLGVETRTSAAAMAL 325


>gi|15832502|ref|NP_311275.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H7 str. Sakai]
 gi|16130301|ref|NP_416870.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli str. K-12 substr. MG1655]
 gi|24113730|ref|NP_708240.1| DNA-binding transcriptional activator EvgA [Shigella flexneri 2a
           str. 301]
 gi|26248747|ref|NP_754787.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           CFT073]
 gi|30063776|ref|NP_837947.1| DNA-binding transcriptional activator EvgA [Shigella flexneri 2a
           str. 2457T]
 gi|82544837|ref|YP_408784.1| DNA-binding transcriptional activator EvgA [Shigella boydii Sb227]
 gi|82779495|ref|YP_405844.1| DNA-binding transcriptional activator EvgA [Shigella dysenteriae
           Sd197]
 gi|89109189|ref|AP_002969.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli str. K-12 substr. W3110]
 gi|91211712|ref|YP_541698.1| DNA-binding transcriptional activator EvgA [Escherichia coli UTI89]
 gi|110642558|ref|YP_670288.1| DNA-binding transcriptional activator EvgA [Escherichia coli 536]
 gi|117624587|ref|YP_853500.1| DNA-binding transcriptional activator EvgA [Escherichia coli APEC
           O1]
 gi|157155607|ref|YP_001463704.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           E24377A]
 gi|157161842|ref|YP_001459160.1| DNA-binding transcriptional activator EvgA [Escherichia coli HS]
 gi|168748322|ref|ZP_02773344.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4113]
 gi|168757412|ref|ZP_02782419.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4401]
 gi|168763544|ref|ZP_02788551.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4501]
 gi|168770937|ref|ZP_02795944.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4486]
 gi|168772798|ref|ZP_02797805.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4196]
 gi|168780329|ref|ZP_02805336.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4076]
 gi|168787282|ref|ZP_02812289.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC869]
 gi|168800704|ref|ZP_02825711.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC508]
 gi|170019339|ref|YP_001724293.1| DNA-binding transcriptional activator EvgA [Escherichia coli ATCC
           8739]
 gi|170081985|ref|YP_001731305.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli str. K-12 substr. DH10B]
 gi|170683753|ref|YP_001744562.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           SMS-3-5]
 gi|188495998|ref|ZP_03003268.1| positive transcription regulator EvgA [Escherichia coli 53638]
 gi|191165549|ref|ZP_03027390.1| positive transcription regulator EvgS [Escherichia coli B7A]
 gi|191173795|ref|ZP_03035317.1| positive transcription regulator EvgS [Escherichia coli F11]
 gi|193062359|ref|ZP_03043454.1| positive transcription regulator EvgS [Escherichia coli E22]
 gi|193069753|ref|ZP_03050704.1| positive transcription regulator EvgS [Escherichia coli E110019]
 gi|194428589|ref|ZP_03061127.1| positive transcription regulator EvgS [Escherichia coli B171]
 gi|194432857|ref|ZP_03065141.1| positive transcription regulator EvgS [Shigella dysenteriae 1012]
 gi|194436013|ref|ZP_03068115.1| positive transcription regulator EvgS [Escherichia coli 101-1]
 gi|195938722|ref|ZP_03084104.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807379|ref|ZP_03249716.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4206]
 gi|208814142|ref|ZP_03255471.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4045]
 gi|208820317|ref|ZP_03260637.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4042]
 gi|209397221|ref|YP_002271856.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4115]
 gi|209919857|ref|YP_002293941.1| DNA-binding transcriptional activator EvgA [Escherichia coli SE11]
 gi|215487633|ref|YP_002330064.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326969|ref|ZP_03443052.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. TW14588]
 gi|218554911|ref|YP_002387824.1| DNA-binding transcriptional activator EvgA [Escherichia coli IAI1]
 gi|218559324|ref|YP_002392237.1| DNA-binding transcriptional activator EvgA [Escherichia coli S88]
 gi|218690512|ref|YP_002398724.1| DNA-binding transcriptional activator EvgA [Escherichia coli ED1a]
 gi|218696011|ref|YP_002403678.1| DNA-binding transcriptional activator EvgA [Escherichia coli 55989]
 gi|218705886|ref|YP_002413405.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           UMN026]
 gi|227887418|ref|ZP_04005223.1| positive transcription regulator EvgA [Escherichia coli 83972]
 gi|237704894|ref|ZP_04535375.1| positive transcription regulator evgA [Escherichia sp. 3_2_53FAA]
 gi|238901538|ref|YP_002927334.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli BW2952]
 gi|253772722|ref|YP_003035553.1| EvgA family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162362|ref|YP_003045470.1| DNA-binding transcriptional activator EvgA [Escherichia coli B str.
           REL606]
 gi|254794331|ref|YP_003079168.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H7 str. TW14359]
 gi|256017470|ref|ZP_05431335.1| DNA-binding transcriptional activator EvgA [Shigella sp. D9]
 gi|256021931|ref|ZP_05435796.1| DNA-binding transcriptional activator EvgA [Escherichia sp.
           4_1_40B]
 gi|260845016|ref|YP_003222794.1| DNA-binding response regulator EvgA in two-component regulatory
           system with EvgS [Escherichia coli O103:H2 str. 12009]
 gi|260856478|ref|YP_003230369.1| DNA-binding response regulator EvgA in two-component regulatory
           system with EvgS [Escherichia coli O26:H11 str. 11368]
 gi|260869074|ref|YP_003235476.1| DNA-binding response regulator EvgA in two-component regulatory
           system with EvgS [Escherichia coli O111:H- str. 11128]
 gi|261223181|ref|ZP_05937462.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259269|ref|ZP_05951802.1| DNA-binding response regulator EvgA in two-component regulatory
           system with EvgS [Escherichia coli O157:H7 str. FRIK966]
 gi|291283605|ref|YP_003500423.1| Positive transcription regulator evgA [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405823|ref|ZP_06649815.1| positive transcription regulator EvgA [Escherichia coli FVEC1412]
 gi|293410774|ref|ZP_06654350.1| positive transcription regulator EvgA [Escherichia coli B354]
 gi|293415650|ref|ZP_06658293.1| positive transcription regulator EvgA [Escherichia coli B185]
 gi|293446741|ref|ZP_06663163.1| positive transcription regulator EvgA [Escherichia coli B088]
 gi|298381572|ref|ZP_06991171.1| positive transcription regulator EvgA [Escherichia coli FVEC1302]
 gi|300817388|ref|ZP_07097605.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300820962|ref|ZP_07101112.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300901336|ref|ZP_07119428.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300903096|ref|ZP_07121033.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300918470|ref|ZP_07135065.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300922026|ref|ZP_07138170.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300928533|ref|ZP_07144058.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300948490|ref|ZP_07162587.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300956366|ref|ZP_07168660.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300983738|ref|ZP_07176719.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300997591|ref|ZP_07181800.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301023584|ref|ZP_07187347.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301023645|ref|ZP_07187401.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301049123|ref|ZP_07196104.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|301304742|ref|ZP_07210849.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301328871|ref|ZP_07221909.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301647537|ref|ZP_07247337.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306814537|ref|ZP_07448699.1| DNA-binding transcriptional activator EvgA [Escherichia coli NC101]
 gi|307139017|ref|ZP_07498373.1| DNA-binding transcriptional activator EvgA [Escherichia coli H736]
 gi|309787598|ref|ZP_07682210.1| positive transcription regulator evgA [Shigella dysenteriae 1617]
 gi|309796818|ref|ZP_07691221.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|312967658|ref|ZP_07781873.1| positive transcription regulator evgA [Escherichia coli 2362-75]
 gi|331642995|ref|ZP_08344130.1| positive transcription regulator EvgA [Escherichia coli H736]
 gi|331648034|ref|ZP_08349124.1| positive transcription regulator EvgA [Escherichia coli M605]
 gi|331653800|ref|ZP_08354801.1| positive transcription regulator EvgA [Escherichia coli M718]
 gi|331663933|ref|ZP_08364843.1| positive transcription regulator EvgA [Escherichia coli TA143]
 gi|331669115|ref|ZP_08369963.1| positive transcription regulator EvgA [Escherichia coli TA271]
 gi|331678362|ref|ZP_08379037.1| positive transcription regulator EvgA [Escherichia coli H591]
 gi|331684028|ref|ZP_08384624.1| positive transcription regulator EvgA [Escherichia coli H299]
 gi|332278475|ref|ZP_08390888.1| DNA-binding transcriptional activator EvgA [Shigella sp. D9]
 gi|82581665|sp|P0ACZ6|EVGA_ECO57 RecName: Full=Positive transcription regulator evgA
 gi|82581666|sp|P0ACZ5|EVGA_ECOL6 RecName: Full=Positive transcription regulator evgA
 gi|82581667|sp|P0ACZ4|EVGA_ECOLI RecName: Full=Positive transcription regulator evgA
 gi|82581668|sp|P0ACZ7|EVGA_SHIFL RecName: Full=Positive transcription regulator evgA
 gi|26109153|gb|AAN81355.1|AE016764_37 Positive transcription regulator evgA [Escherichia coli CFT073]
 gi|216551|dbj|BAA01918.1| evgA protein [Escherichia coli]
 gi|216553|dbj|BAA03107.1| EvgA [Escherichia coli]
 gi|1788712|gb|AAC75428.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli str. K-12 substr. MG1655]
 gi|1799780|dbj|BAA16240.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli str. K12 substr. W3110]
 gi|13362718|dbj|BAB36671.1| putative positive transcription regulator [Escherichia coli O157:H7
           str. Sakai]
 gi|24052804|gb|AAN43947.1| putative positive transcription regulator (sensor EvgS) [Shigella
           flexneri 2a str. 301]
 gi|30042031|gb|AAP17757.1| putative positive transcription regulator (sensor EvgS) [Shigella
           flexneri 2a str. 2457T]
 gi|81243643|gb|ABB64353.1| putative positive transcription regulator [Shigella dysenteriae
           Sd197]
 gi|81246248|gb|ABB66956.1| putative positive transcription regulator [Shigella boydii Sb227]
 gi|91073286|gb|ABE08167.1| putative positive transcription regulator [Escherichia coli UTI89]
 gi|110344150|gb|ABG70387.1| positive transcription regulator EvgA [Escherichia coli 536]
 gi|115513711|gb|ABJ01786.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli APEC O1]
 gi|157067522|gb|ABV06777.1| positive transcription regulator EvgS [Escherichia coli HS]
 gi|157077637|gb|ABV17345.1| positive transcription regulator EvgA [Escherichia coli E24377A]
 gi|169754267|gb|ACA76966.1| two component transcriptional regulator, LuxR family [Escherichia
           coli ATCC 8739]
 gi|169889820|gb|ACB03527.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli str. K-12 substr. DH10B]
 gi|170521471|gb|ACB19649.1| positive transcription regulator EvgS [Escherichia coli SMS-3-5]
 gi|187771228|gb|EDU35072.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4196]
 gi|188017285|gb|EDU55407.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4113]
 gi|188491197|gb|EDU66300.1| positive transcription regulator EvgA [Escherichia coli 53638]
 gi|189002125|gb|EDU71111.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4076]
 gi|189355611|gb|EDU74030.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4401]
 gi|189360188|gb|EDU78607.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4486]
 gi|189366299|gb|EDU84715.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC4501]
 gi|189372818|gb|EDU91234.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC869]
 gi|189377012|gb|EDU95428.1| positive transcription regulator EvgS [Escherichia coli O157:H7
           str. EC508]
 gi|190904472|gb|EDV64180.1| positive transcription regulator EvgS [Escherichia coli B7A]
 gi|190905943|gb|EDV65560.1| positive transcription regulator EvgS [Escherichia coli F11]
 gi|192932025|gb|EDV84624.1| positive transcription regulator EvgS [Escherichia coli E22]
 gi|192956955|gb|EDV87407.1| positive transcription regulator EvgS [Escherichia coli E110019]
 gi|194413312|gb|EDX29596.1| positive transcription regulator EvgS [Escherichia coli B171]
 gi|194418845|gb|EDX34930.1| positive transcription regulator EvgS [Shigella dysenteriae 1012]
 gi|194424741|gb|EDX40726.1| positive transcription regulator EvgS [Escherichia coli 101-1]
 gi|208727180|gb|EDZ76781.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4206]
 gi|208735419|gb|EDZ84106.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4045]
 gi|208740440|gb|EDZ88122.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4042]
 gi|209158621|gb|ACI36054.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC4115]
 gi|209764548|gb|ACI80586.1| putative positive transcription regulator [Escherichia coli]
 gi|209764550|gb|ACI80587.1| putative positive transcription regulator [Escherichia coli]
 gi|209764552|gb|ACI80588.1| putative positive transcription regulator [Escherichia coli]
 gi|209764554|gb|ACI80589.1| putative positive transcription regulator [Escherichia coli]
 gi|209764556|gb|ACI80590.1| putative positive transcription regulator [Escherichia coli]
 gi|209913116|dbj|BAG78190.1| two-component response regulator [Escherichia coli SE11]
 gi|215265705|emb|CAS10110.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli O127:H6 str. E2348/69]
 gi|217319336|gb|EEC27761.1| positive transcription regulator EvgA [Escherichia coli O157:H7
           str. TW14588]
 gi|218352743|emb|CAU98529.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli 55989]
 gi|218361679|emb|CAQ99276.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli IAI1]
 gi|218366093|emb|CAR03838.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli S88]
 gi|218428076|emb|CAR08994.2| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli ED1a]
 gi|218432983|emb|CAR13878.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli UMN026]
 gi|222034107|emb|CAP76848.1| Positive transcription regulator evgA [Escherichia coli LF82]
 gi|226901260|gb|EEH87519.1| positive transcription regulator evgA [Escherichia sp. 3_2_53FAA]
 gi|227835768|gb|EEJ46234.1| positive transcription regulator EvgA [Escherichia coli 83972]
 gi|238860864|gb|ACR62862.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli BW2952]
 gi|242377987|emb|CAQ32757.1| EvgA transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253323766|gb|ACT28368.1| two component transcriptional regulator, LuxR family [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974263|gb|ACT39934.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli B str. REL606]
 gi|253978430|gb|ACT44100.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli BL21(DE3)]
 gi|254593731|gb|ACT73092.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli O157:H7 str. TW14359]
 gi|257755127|dbj|BAI26629.1| DNA-binding response regulator EvgA in two-component regulatory
           system with EvgS [Escherichia coli O26:H11 str. 11368]
 gi|257760163|dbj|BAI31660.1| DNA-binding response regulator EvgA in two-component regulatory
           system with EvgS [Escherichia coli O103:H2 str. 12009]
 gi|257765430|dbj|BAI36925.1| DNA-binding response regulator EvgA in two-component regulatory
           system with EvgS [Escherichia coli O111:H- str. 11128]
 gi|260448540|gb|ACX38962.1| two component transcriptional regulator, LuxR family [Escherichia
           coli DH1]
 gi|281179449|dbj|BAI55779.1| two-component response regulator [Escherichia coli SE15]
 gi|281601797|gb|ADA74781.1| Positive transcription regulator evgA [Shigella flexneri 2002017]
 gi|290763478|gb|ADD57439.1| Positive transcription regulator evgA [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323571|gb|EFE62999.1| positive transcription regulator EvgA [Escherichia coli B088]
 gi|291428031|gb|EFF01058.1| positive transcription regulator EvgA [Escherichia coli FVEC1412]
 gi|291433298|gb|EFF06277.1| positive transcription regulator EvgA [Escherichia coli B185]
 gi|291471242|gb|EFF13726.1| positive transcription regulator EvgA [Escherichia coli B354]
 gi|294490539|gb|ADE89295.1| positive transcription regulator EvgA [Escherichia coli IHE3034]
 gi|298279014|gb|EFI20528.1| positive transcription regulator EvgA [Escherichia coli FVEC1302]
 gi|299880746|gb|EFI88957.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300299069|gb|EFJ55454.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300304162|gb|EFJ58682.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300316817|gb|EFJ66601.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300355237|gb|EFJ71107.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300396951|gb|EFJ80489.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300404873|gb|EFJ88411.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300408467|gb|EFJ92005.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300414353|gb|EFJ97663.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300421597|gb|EFK04908.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300451999|gb|EFK15619.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300463464|gb|EFK26957.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526715|gb|EFK47784.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300530014|gb|EFK51076.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300839973|gb|EFK67733.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300844745|gb|EFK72505.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301074333|gb|EFK89139.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|305851931|gb|EFM52383.1| DNA-binding transcriptional activator EvgA [Escherichia coli NC101]
 gi|307554417|gb|ADN47192.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli ABU 83972]
 gi|307626054|gb|ADN70358.1| DNA-binding transcriptional activator EvgA [Escherichia coli UM146]
 gi|308119577|gb|EFO56839.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|308925176|gb|EFP70671.1| positive transcription regulator evgA [Shigella dysenteriae 1617]
 gi|309702663|emb|CBJ01992.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli ETEC H10407]
 gi|312287855|gb|EFR15760.1| positive transcription regulator evgA [Escherichia coli 2362-75]
 gi|312946970|gb|ADR27797.1| DNA-binding transcriptional activator EvgA [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313651189|gb|EFS15588.1| positive transcription regulator evgA [Shigella flexneri 2a str.
           2457T]
 gi|315137005|dbj|BAJ44164.1| positive transcription regulator evgA [Escherichia coli DH1]
 gi|315256387|gb|EFU36355.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315288205|gb|EFU47605.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293498|gb|EFU52850.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315298195|gb|EFU57459.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|315615623|gb|EFU96255.1| positive transcription regulator evgA [Escherichia coli 3431]
 gi|320173478|gb|EFW48676.1| Positive transcription regulator EvgA [Shigella dysenteriae CDC
           74-1112]
 gi|320180363|gb|EFW55294.1| Positive transcription regulator EvgA [Shigella boydii ATCC 9905]
 gi|320192004|gb|EFW66649.1| Positive transcription regulator EvgA [Escherichia coli O157:H7
           str. EC1212]
 gi|320196218|gb|EFW70842.1| Positive transcription regulator EvgA [Escherichia coli WV_060327]
 gi|320199943|gb|EFW74532.1| Positive transcription regulator EvgA [Escherichia coli EC4100B]
 gi|320641021|gb|EFX10502.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H7 str. G5101]
 gi|320646409|gb|EFX15332.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H- str. 493-89]
 gi|320651678|gb|EFX20058.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H- str. H 2687]
 gi|320657259|gb|EFX25064.1| DNA-binding transcriptional activator EvgA [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662963|gb|EFX30287.1| DNA-binding transcriptional activator EvgA [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667709|gb|EFX34620.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323156376|gb|EFZ42533.1| positive transcription regulator evgA [Escherichia coli EPECa14]
 gi|323162230|gb|EFZ48089.1| positive transcription regulator evgA [Escherichia coli E128010]
 gi|323170367|gb|EFZ56020.1| positive transcription regulator evgA [Escherichia coli LT-68]
 gi|323177505|gb|EFZ63093.1| positive transcription regulator evgA [Escherichia coli 1180]
 gi|323184323|gb|EFZ69699.1| positive transcription regulator evgA [Escherichia coli 1357]
 gi|323187907|gb|EFZ73202.1| positive transcription regulator evgA [Escherichia coli RN587/1]
 gi|323936531|gb|EGB32819.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323941124|gb|EGB37310.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944867|gb|EGB40933.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323949582|gb|EGB45470.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955873|gb|EGB51628.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323961433|gb|EGB57044.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323967796|gb|EGB63208.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323970931|gb|EGB66182.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323977443|gb|EGB72529.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324009212|gb|EGB78431.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324011071|gb|EGB80290.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324016832|gb|EGB86051.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324117709|gb|EGC11608.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326340178|gb|EGD63982.1| Positive transcription regulator EvgA [Escherichia coli O157:H7
           str. 1125]
 gi|326344182|gb|EGD67943.1| Positive transcription regulator EvgA [Escherichia coli O157:H7
           str. 1044]
 gi|327252011|gb|EGE63683.1| positive transcription regulator evgA [Escherichia coli STEC_7v]
 gi|330912167|gb|EGH40677.1| positive transcription regulator EvgA [Escherichia coli AA86]
 gi|331039793|gb|EGI12013.1| positive transcription regulator EvgA [Escherichia coli H736]
 gi|331042894|gb|EGI15034.1| positive transcription regulator EvgA [Escherichia coli M605]
 gi|331048649|gb|EGI20725.1| positive transcription regulator EvgA [Escherichia coli M718]
 gi|331059732|gb|EGI31709.1| positive transcription regulator EvgA [Escherichia coli TA143]
 gi|331064309|gb|EGI36220.1| positive transcription regulator EvgA [Escherichia coli TA271]
 gi|331074822|gb|EGI46142.1| positive transcription regulator EvgA [Escherichia coli H591]
 gi|331078980|gb|EGI50182.1| positive transcription regulator EvgA [Escherichia coli H299]
 gi|332090064|gb|EGI95163.1| positive transcription regulator evgA [Shigella dysenteriae 155-74]
 gi|332093677|gb|EGI98735.1| positive transcription regulator evgA [Shigella boydii 3594-74]
 gi|332100827|gb|EGJ04173.1| DNA-binding transcriptional activator EvgA [Shigella sp. D9]
 gi|332344197|gb|AEE57531.1| positive transcription regulator EvgA [Escherichia coli UMNK88]
 gi|332755014|gb|EGJ85379.1| positive transcription regulator evgA [Shigella flexneri 4343-70]
 gi|332755414|gb|EGJ85778.1| positive transcription regulator evgA [Shigella flexneri K-671]
 gi|332756242|gb|EGJ86593.1| positive transcription regulator evgA [Shigella flexneri 2747-71]
 gi|332766182|gb|EGJ96392.1| response regulator [Shigella flexneri 2930-71]
 gi|333001507|gb|EGK21075.1| positive transcription regulator evgA [Shigella flexneri VA-6]
 gi|333001842|gb|EGK21408.1| positive transcription regulator evgA [Shigella flexneri K-218]
 gi|333002168|gb|EGK21732.1| positive transcription regulator evgA [Shigella flexneri K-272]
 gi|333015993|gb|EGK35325.1| positive transcription regulator evgA [Shigella flexneri K-227]
 gi|333016470|gb|EGK35801.1| positive transcription regulator evgA [Shigella flexneri K-304]
          Length = 204

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +     + + +L  ++D+                +  LTE  G S    V   
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDI--------------EILAELTE--GGSAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                 +G L                K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSL-----------TSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|323527635|ref|YP_004229788.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1001]
 gi|323384637|gb|ADX56728.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1001]
          Length = 229

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +             +   +  +     +      +                  
Sbjct: 5   VKVVIADDHPVILFGAEQALLKFPGIQVVARARQSTELIKVLQTTA-------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  D  +      D +  +  L        ++         +              
Sbjct: 51  -CDVLVTDLAMPGGQFGDGLPLIGYLRRNFPNLPIV------VLTMLENAALLQRLRELG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                + + D++ I + +  +      +       +        +  +        +  L
Sbjct: 104 VTSVVNKSDDLSHIGLAVQHVSRHLEYLSPSVKASL--------DALRMNAGGKSDEVML 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +     G T  EI+  L  S  T++    + MRK      S    YA  N ++
Sbjct: 156 SRRELEVVRLFVSGMTIKEISEQLNRSIKTISTQKNTAMRKLGIDRDSELFQYAQSNGLL 215


>gi|120612865|ref|YP_972543.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120591329|gb|ABM34769.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 219

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 61/220 (27%), Gaps = 23/220 (10%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + E  GA     L+         +D  +     
Sbjct: 14  RLFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPGIVLMDVGMKDVSG 73

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D    +   +             L   ++              + Y       + +   
Sbjct: 74  LDFAARLLAGDGAP--------RVLMLSMYDNPEYVQRALQVGASGYVLKDAPASELVAA 125

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   G  +       +                +      LT RE E L  +  G +S
Sbjct: 126 LEAVAAGGTFLSPAVSQRLF--------------RNQAPKPLLTPRESEILAALGRGASS 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +IA  LG+S  TV  +  +I R+    + +  I YAV +
Sbjct: 172 KQIACDLGLSVRTVEAHRQNIRRRLELGSLAELIRYAVEH 211


>gi|93009156|gb|ABE97932.1| GacA [Pseudomonas sp. BE3-2-40]
          Length = 182

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 17/198 (8%)

Query: 38  PLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   ++    +  + +   G    +  R        +D  +      +  R +  S   
Sbjct: 1   GITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLEATRKLLRSH-- 58

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                ++      C      P            Y +    +  +   + L+F   R I  
Sbjct: 59  ---PDIKVVAVTVC---EEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFAGQRYISP 112

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++ + +    N              L+ RE++    I   +    I+  L +S  T
Sbjct: 113 QIAQQLAIKSFQPTNE--------SPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKT 164

Query: 217 VNNYIASIMRKTATKTRS 234
           VN Y   I  K +  +  
Sbjct: 165 VNTYRYRIFEKLSITSDV 182


>gi|222109041|ref|YP_002551307.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
 gi|4883686|gb|AAD31600.1| TraR [Agrobacterium radiobacter K84]
 gi|221727963|gb|ACM31013.1| conjugal transfer regulatory protein [Agrobacterium radiobacter
           K84]
          Length = 234

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 22/219 (10%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + ++ G + +  +       Q    I  +++  D        + D    V++R
Sbjct: 21  LKTGLADVADHFGFTGYAYLHI-----QHKHIIAVTNYHHDWRSLYFDKKFDALDPVVKR 75

Query: 105 PTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                                            G+ +                 L   + 
Sbjct: 76  ARSRKQVFAWSGEQERPALSKEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLASERT 135

Query: 152 RIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            I L   +  +         +    F            L  +E   L WI+ GKT +EIA
Sbjct: 136 AIPLDREIDAVAAAAAVGQLHARISFLRTSPTAEDAVWLDPKEATYLRWIAVGKTMEEIA 195

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G+  N+V   +   M++   ++++   A A+R  ++
Sbjct: 196 DVEGVKYNSVRVKLREAMKRFDIRSKAHLTALAIRRKLI 234


>gi|302543707|ref|ZP_07296049.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461325|gb|EFL24418.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 206

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 25/227 (11%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVS 79
           + V  +    D       L   +S    +  + E   G     + R        LD  + 
Sbjct: 4   AGVIRVLLADDEHLIRGALAALLSLEDDLLVVAEAASGPEALAMARAHRPDVAVLDLQMP 63

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                 +   +           L     +                     +   T    +
Sbjct: 64  GRDGVGVAAALRSE--------LPDCRTMIVTSHGKPGHLKRALEAGARGFVPKTASAQQ 115

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  +    R +  D                   D     D  LT RE E L   ++
Sbjct: 116 LAEIIRAVHGGSRYVDPDLAA----------------DAISAGDSPLTARETELLDLAAD 159

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G +  EIA    +S  TV NY+++   K   + R  A+  A     +
Sbjct: 160 GASVAEIARRAALSPGTVRNYLSAAAAKLHAENRHAAVRRARERGWL 206


>gi|330811658|ref|YP_004356120.1| response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379766|gb|AEA71116.1| putative response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 849

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 38/80 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L  +  +  +       +D  L+ RE+E L  I++G ++ +IA  L IS +TV  +   I
Sbjct: 767 LVRWAQSAEQVEPPASAEDTLLSHRELEVLELIAQGHSNQQIAERLFISLHTVKTHARRI 826

Query: 225 MRKTATKTRSGAIAYAVRNN 244
             K   + R+ A+A A    
Sbjct: 827 HSKLGVQRRTQAVAKAKVMG 846


>gi|257882181|ref|ZP_05661834.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|294621968|ref|ZP_06701113.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|257817839|gb|EEV45167.1| regulatory protein [Enterococcus faecium 1,231,502]
 gi|291598447|gb|EFF29519.1| DNA-binding response regulator [Enterococcus faecium U0317]
          Length = 197

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 15/185 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              +L           D  +      D  + +             +   L    F     
Sbjct: 26  DALVLYETHRPDVLLTDIRMPKQTGIDAAKEILAK--------FPKAILLLLTTFKDEEY 77

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                +     Y     ++  I   +   +    +       EI            + D 
Sbjct: 78  IREAFSIGVKGYLIK-QNLQAIIPSVKSAYNGQAVFG----NEIIETFTQMMKNKPTIDS 132

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    F  + RE+  +  ++ GK + EIA  L +S  TV NYI+ ++ K   + R+    
Sbjct: 133 HAYASF--SERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAI 190

Query: 239 YAVRN 243
           Y  ++
Sbjct: 191 YFYQH 195


>gi|222080193|ref|YP_002540056.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738838|gb|ACM39617.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 227

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 24/220 (10%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + ++ G + +  +       Q       +++  +        + D    V++R
Sbjct: 14  LKTGLADIADHFGFTGYAYLHI-----QHRHITAVTNYHPEWQSVYFDKKFDALDPVVKR 68

Query: 105 PTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                                            G+ +                 L   + 
Sbjct: 69  ARSRKHIFTWSGEHERPTLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLA-SEK 127

Query: 152 RIILRDRLWEIGLLAA-----YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
            +I  DR  +    A      +    F            L  +E   L WI+ GKT +EI
Sbjct: 128 PVIDLDREIDAVAAAGTIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEI 187

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A + G+  N+V   +   M++   ++++   A A+R  ++
Sbjct: 188 ADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 227


>gi|332520649|ref|ZP_08397111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
 gi|332044002|gb|EGI80197.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 17/178 (9%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +       L + +  +       V+         +   L EN        +
Sbjct: 51  IDLVITDVTMPEVDGIALNKWIKKTANHIKTLVV--SMHNTPGIIDDLIEND------VD 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y             +  +    +   ++ + +I L   ++    K   +          
Sbjct: 103 GYLQKNAKKEEFLKAIETILGGEKYFSQE-IKDIYLKNKFEKKKDKDIKLTK-------- 153

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           REVE ++ I+E  T+ EIA  L +S++T+ +Y  +++ K   +  +G   YA++   V
Sbjct: 154 REVEVISLIAEEFTTQEIADKLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGYV 211


>gi|326391343|ref|ZP_08212882.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992606|gb|EGD51059.1| transcriptional regulator, LuxR family [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 257

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW-GKDFELTG 188
                     I   L L   K  ++    +    L     ++  + +         +L  
Sbjct: 139 IAIPLIIDDEIIGYLDLSTIKDSMVDEMVVIVELLAYKIVSDYIRMFGNKAKNSRVKLKE 198

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++ L  +++G     IA  LGIS NTVN +  +I +K   ++   AIA A+R  ++
Sbjct: 199 EQLKVLKLVTKGYKDIVIAKELGISINTVNYHKRNIFKKLDVRSTREAIAKAIRMGLI 256


>gi|298385200|ref|ZP_06994759.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
 gi|298262344|gb|EFI05209.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14]
          Length = 258

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L  I +G  S EIA  L +S +TVN +  +++RK   +    AI       
Sbjct: 196 PLTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIEAIRIGYETG 255

Query: 245 IV 246
           I+
Sbjct: 256 IL 257


>gi|260911714|ref|ZP_05918290.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634139|gb|EEX52253.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 318

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +        L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 INQKNDNVDNLSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|254387412|ref|ZP_05002655.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194346200|gb|EDX27166.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 201

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ ++  +    ++ A     G                LD  
Sbjct: 2   IRVLLAEDQGMMRGALALLLGMEEDIEVVAQVAA-----GDEIVPAALAARPDVALLDIE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      D     A ++             L    F                +      V
Sbjct: 57  LPGRSGLD-----AAADLRVRCPG---CRVLILTTFGRPGYLRRAMEAGAAGFLVKDGPV 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    ++I                +   +          LT RE + L   
Sbjct: 109 EELAAAVRRVLAGEKVI----------------DPALAAAALGAGPNPLTARERDVLNAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++G T  ++A  + +S +TV N+++S++ KT T+ R  A+  A R   +
Sbjct: 153 ADGATVADVAARVSLSESTVRNHLSSVIGKTGTRNRMEALRAARRQGWL 201


>gi|241666769|ref|YP_002984853.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862226|gb|ACS59891.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 70/231 (30%), Gaps = 20/231 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---FQEQKL 74
           + TS V+           +  +D  +S    +  L    G    L               
Sbjct: 3   RMTSTVTTSNLGDQDRPTVFVVDDDISVRESLELLIGSAGWRPLLFDSAHSFLEAPVLAS 62

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
              +  D     +  + L           R   +F   F  +P  +    G    + +  
Sbjct: 63  PCCLVLDVNMPGLNGLDLQSMITISRS--RMPIIFVSGFGDVPTTVKALKGGALDFLTKP 120

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +       +     +   +LRD    + L   Y+A               LT RE E +
Sbjct: 121 IETVAFLEAVSSALEQSAAMLRDESNLLALQGCYEA---------------LTKREREVM 165

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             + +G  + ++A  L IS  TV  +   +MRK   +T    +  A R  +
Sbjct: 166 VRVVKGLLNKQVAYELDISEITVKAHRGQVMRKMCARTLPDLVNMAARLRL 216


>gi|218680259|ref|ZP_03528156.1| transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 234

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 31  DLLARMIPLDCTVSWTMRMYA-LTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           D L  +  L    S   +  A   +  G   +  +           +I +S++  +    
Sbjct: 6   DKLTDLSALQGDESILRQAIADFADQAGFGGYAYLYIRPG-----HTIAASNYDPEWRST 60

Query: 90  MALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFD 136
                 +    V++R   L                             G+ +        
Sbjct: 61  YFRQNFEAVDPVVKRAKSLKQAFTWSGEQERPRLSKTERAFYAQAADFGIRSGITVPIRT 120

Query: 137 VARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
                    L   K  I L            +   +    F            L  +E  
Sbjct: 121 ANGSMSMFTLASAKTAIDLKRDIDTVAAAAAVGQLHSRMCFLPLTPSEQHPAWLDPKEGT 180

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L WI+ GKT +E+A + G+  N+V + I    ++    T    IA A+R  ++
Sbjct: 181 YLRWIAVGKTMEEVADLEGVKYNSVKSKIEETRKRLGIHTMPHLIALAIRAGLI 234


>gi|328470535|gb|EGF41446.1| fimbrial protein Z transcriptional regulator [Vibrio
           parahaemolyticus 10329]
          Length = 201

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 40/238 (16%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
            ++ ++N ++  +       +  L     +   +       S    +             
Sbjct: 2   KDMNKMNCLIFDDHPLVCVAIKSLLKELGMTNEVFTATSAKSAFKTLKE----------- 50

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
                  +   LD  ++    FD  + +     +           +F     +   +   
Sbjct: 51  ----SNIELLILDVNLADCDGFDFYKRIKSHGYE--------GKVIFFSAETSQMYSQMA 98

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                + Y   + +   ++  +  +                    Y    FK       +
Sbjct: 99  FRSGADGYVCKSENHDILKDAIEAVVKG-----------------YTFFKFKQVANEVRE 141

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +L+ RE   + ++ +GK++ +IA +L IS  TV+ Y   ++ K   K        A
Sbjct: 142 MPQLSSRESAVMKYLLQGKSNRDIASVLSISDKTVSTYKRRVLDKFNVKNIIELTRVA 199


>gi|317407768|gb|EFV87695.1| hypothetical protein HMPREF0005_03216 [Achromobacter xylosoxidans
           C54]
          Length = 223

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 66/245 (26%), Gaps = 23/245 (9%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           MN  I Q      R    RT          + +  ++         + +   T     S 
Sbjct: 1   MNIPIDQY----ARCSRLRTLVADDHHLVREGVKLVLSQRSMEHLVLVVAEATCAE--SV 54

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
              +         LD  +        +R +  +  D           +            
Sbjct: 55  LTQLATHEIDLLVLDLGMPGVTGSRWIRALRDAHPD--------LHIIVMTANQDTRTRD 106

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
              A     Y     +   +   +  L  K       R    G                 
Sbjct: 107 AVLAAGVEAYLLKQGETQTLLDAVNTLALKRATPTAARAAASGDAPPPSPAAPAES---- 162

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  I+ G T  E+A  L IS  TV  +  ++MRK      +  +AYA
Sbjct: 163 -----LTRREQQILALIATGATGTEVARRLYISPLTVRKHRENLMRKLEVHNTAELVAYA 217

Query: 241 VRNNI 245
           VR  I
Sbjct: 218 VRLGI 222


>gi|17546316|ref|NP_519718.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17428613|emb|CAD15299.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|99652817|dbj|BAE94659.1| response regulator [Ralstonia solanacearum]
          Length = 210

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 39/235 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +        +    S    +       G    +L     
Sbjct: 14  TVFVVDDDEAMRDSLTWLLEGNGY-----NVRTYRSAEEFLVDDKRGEGVGCLIL----- 63

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      +L   +          ++      F      +P  ++       
Sbjct: 64  ------DVRMQGMSGPELQDRLLAENNRM--PIV------FVTGHGDVPMAVSTMKKGAV 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +       R++ + R  +         +  +           LT 
Sbjct: 110 DFIEKPFDESELRELV------ERMLSKARTED---------SAAREQKAANDLLSRLTT 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSR 209


>gi|83746248|ref|ZP_00943301.1| Hypothetical Protein RRSL_03835 [Ralstonia solanacearum UW551]
 gi|207721450|ref|YP_002251891.1| response regulator vsrc protein [Ralstonia solanacearum MolK2]
 gi|207723588|ref|YP_002253987.1| response regulator vsrc protein [Ralstonia solanacearum MolK2]
 gi|207742569|ref|YP_002258961.1| response regulator vsrc protein [Ralstonia solanacearum IPO1609]
 gi|300703298|ref|YP_003744900.1| response regulator (vsrc), luxr family [Ralstonia solanacearum
           CFBP2957]
 gi|83726998|gb|EAP74123.1| Hypothetical Protein RRSL_03835 [Ralstonia solanacearum UW551]
 gi|206586610|emb|CAQ17197.1| response regulator vsrc protein [Ralstonia solanacearum MolK2]
 gi|206588790|emb|CAQ35753.1| response regulator vsrc protein [Ralstonia solanacearum MolK2]
 gi|206593962|emb|CAQ60889.1| response regulator vsrc protein [Ralstonia solanacearum IPO1609]
 gi|299070961|emb|CBJ42269.1| putative response regulator (vsrC), LuxR family [Ralstonia
           solanacearum CFBP2957]
          Length = 221

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 12/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            TS +  L    D    +        +        +   A         + +  + D ++
Sbjct: 1   MTSSLRSLLVVDDHPLALSGTTT---FLAHALPEIQVHAAIGRRQALALIDEGIRPDVVL 57

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDV 137
              W  D     A+ E        +             PE +          +     D 
Sbjct: 58  LDVWLSDCTGFDAMRELRGKLPEARFAFMSAE----NTPEIVAKAQALGAIGFIGKHADA 113

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +F        +   ++G       N           +  LT R+   L  +
Sbjct: 114 HAFSQAVAGIFGGASSFPSED--DLGTANGK--NGASHGIPITPAELGLTPRQGSVLALL 169

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG  +  IA  LG++ NTV  ++++I+++   +TR   I+   R  +
Sbjct: 170 LEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMERFRL 217


>gi|330960741|gb|EGH61001.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 24/222 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R       P   + + R I      +   +     E +  +       D      LD 
Sbjct: 2   ACRIIVADDHPLFREGMLRTIERLLPEAIIEQAGNFNEVLTLAR----SGDEVDTLILDL 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
                     +  +            +R + +   +               + +     D
Sbjct: 58  RFPGLESMHTIAELRNE--------FRRTSIIVVSMIDDPETISQVMLNGADGFIGKNID 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   ++ +     ++             Y++      +        LT R+ + L+ 
Sbjct: 110 PQEITDSIVAIRQGEVVV------------KYKSEGSIFNESAVNALSPLTARQKQVLSL 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ GKT+ EIA  LGIS  TV  +++S+++     TR+ A A
Sbjct: 158 VAAGKTNKEIAKDLGISPFTVRIHVSSLLKVLGVSTRAAAAA 199


>gi|313204085|ref|YP_004042742.1| transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443401|gb|ADQ79757.1| transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 220

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +   + +   I + ++      +    + L     +     N  K           LT  
Sbjct: 104 FILKSNEYDVITMAILDTLSGKKYFCSEALQ----IIMDGHNRKKESSGKRD---LLTHT 156

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E +   ++GKT+ EIA    +S +T+N +  +I RK         I +A++N +V
Sbjct: 157 ELELIQLFTQGKTAKEIADSRCLSHHTINTHRKNIFRKLEINNVQELIKFALKNGLV 213


>gi|302553857|ref|ZP_07306199.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471475|gb|EFL34568.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 325

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 72/293 (24%), Gaps = 73/293 (24%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ +V+  ++    + ++ L +    +  +                    G   +   
Sbjct: 30  VRRLRVVVADDNPVVRAGLTALLSGRADIEVVAEATD---------------GRQAYDAA 74

Query: 65  RWDLFQEQKLDSIVSSDWPF-------------------------DLVRC----MALSEK 95
           +        LD  +                               + +R       +  +
Sbjct: 75  QQHRPDVVLLDVRMPGVDGISALPYLVQIAPVVMLTYSRESEIVQEALRRGAGGYLVHGE 134

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG---- 151
                ++    ++     H  P           R  + T  +             G    
Sbjct: 135 FTADQLVDAVRDIKEGRAHFTPTAAGALLAQLRRDQTPTPPLPEGLGQSSSATAYGISTS 194

Query: 152 -------------------RIILRDRLWE-IGLLAAYQANMFKS-----YDVHWGKDFEL 186
                                       E +  +  +                    F+L
Sbjct: 195 AKSYSQPQNPALPVHFTPHPAPSPSTSSENLSQMQPHVGQSSSEWTSGRPAAPDRSRFQL 254

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + RE E +  I+ G  + +IA    IS  TV N+I  I  K  + +R  A+A 
Sbjct: 255 STREAEIMDLIASGMNNQQIAATCFISEKTVKNHINRIFAKLHSTSRGEAVAK 307


>gi|254441976|ref|ZP_05055460.1| transcriptional regulator, LuxR family protein [Octadecabacter
           antarcticus 307]
 gi|198250584|gb|EDY74908.1| transcriptional regulator, LuxR family protein [Octadecabacter
           antarcticus 307]
          Length = 146

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 12/127 (9%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                      +   +     +   +  +    +    D +  +                
Sbjct: 31  AEVALEAGAAGFVPKSLPAKSLVNAIKFMAMGEQYAPIDFMTAV------------EQTP 78

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE++ L  ++EGK++ EIA  L I   TV  ++ ++ RK     R+ A  
Sbjct: 79  TNPLADKLTERELQMLKGLTEGKSNKEIARDLEIREPTVKLHMKTLYRKVGVANRTQAAL 138

Query: 239 YAVRNNI 245
                N+
Sbjct: 139 IGREANL 145


>gi|313201168|ref|YP_004039826.1| LuxR family transcriptional regulator [Methylovorus sp. MP688]
 gi|312440484|gb|ADQ84590.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688]
          Length = 348

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 4/241 (1%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
             +  +  NR+    T  ++ L T  DL   +         T  ++      G+      
Sbjct: 88  QPRTTVHFNRQALHSTPGLADLNTGHDLSQALCTSVFLPDCTSFLFISLFRSGSRARAFE 147

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D+  +Q L   + S W  +L+  +  +     +               ++    +  A
Sbjct: 148 AGDIRLKQWLTPHLYSCWRTNLLADIERTRLPNKWQDKASAYVDRRG---SIVYADSAFA 204

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              ++    ++   R+   L+ +     +        I L       + +          
Sbjct: 205 EFVSQVW-PSWRGGRLPHALVDMLVSNPVSSIQLPIGIYLNQQQAGGLTRLDIGRPSPLD 263

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+ RE E     ++  +  EIA   G+S  TV +Y+  I  K A   ++  +    R+ 
Sbjct: 264 KLSRREREVALGFAQAHSYKEIAAETGLSPATVRHYLRGIYAKLAINDKAELVRLVTRHE 323

Query: 245 I 245
           +
Sbjct: 324 L 324


>gi|258592851|emb|CBE69160.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 160

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE + L  I++G +  +IA  L  S  T+ N+ A I +K   + R+G + +A RN 
Sbjct: 97  RLTPREQQILRLIAQGFSDKQIARTLQRSVRTIENHAARIRQKLHIENRTGLVRFAFRNR 156

Query: 245 IV 246
           ++
Sbjct: 157 LI 158


>gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 319

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 23/219 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LAR+           +   + +    +   L       + +   +  
Sbjct: 114 VDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILAL-------DVQGKIVWK 166

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    DL+              ++         F  L     P       Y + +  +  
Sbjct: 167 TQKASDLLNQYL--------PEIEGFEAGLKAWFSDLEYEKDPKKLTSCSYSTPSQQLQL 218

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +                + +  L+    +              +LT RE E + W+  
Sbjct: 219 LLLT--------PWQSGTSVAKNYLIQIKTSTPALDVADILKYCPQLTQREAEVMHWLLL 270

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A
Sbjct: 271 GKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|238765471|ref|ZP_04626390.1| two-component response regulator [Yersinia kristensenii ATCC 33638]
 gi|238696295|gb|EEP89093.1| two-component response regulator [Yersinia kristensenii ATCC 33638]
          Length = 176

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 23/170 (13%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +       ++  +  S+             +       +        G   
Sbjct: 23  PSCVLLDIRMPGKSGMAILEAIQESDSS--------LPVIIMTGHGNVELCRRAFKGGAL 74

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +   D   +   + +              +    A        SY   +    +L+ 
Sbjct: 75  EFLTKPIDADVLIETISMAL------------DQHEQALVVYKRQASYQQLFN---QLSA 119

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           RE E  T I +G+TS +IA IL IS  TV  + A+I  K    + +  I 
Sbjct: 120 REREVATLIIQGETSKQIAHILSISPRTVEAHRANIFAKLEVNSLASLIH 169


>gi|238899093|ref|YP_002924775.1| putative transcriptional regulator, response regulator receiver and
           GerE domains [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466853|gb|ACQ68627.1| putative transcriptional regulator, response regulator receiver and
           GerE domains [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 207

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 33/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +I++  +       +  L  + +    +  +D                G      V+   
Sbjct: 3   SILIVDDHPVARLAIRMLLEK-ENYTVVGEVDD---------------GFKALQQVKQFN 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + S    DLV  +   E         +   L                   +
Sbjct: 47  PDLILVDIDILSLNGIDLVLRLRHQEY--------KGGILVLTGKDNAHYITRCKQAGAD 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   +++ ++  L  +                 L   + +  K +     +  +L+ 
Sbjct: 99  GFISKRNNLSELKNALRSIESGYSFFP---------LQRAEFSDSKPFSDETDRINQLST 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E++ L+ +S+G    +IA  + IS  TV+ Y + +M K           ++ R+N+
Sbjct: 150 KELQVLSCLSKGMKILDIAEQMKISHKTVSTYKSRMMYKLQLNNMVDLYHFSQRHNL 206


>gi|66045354|ref|YP_235195.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256061|gb|AAY37157.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas
           syringae pv. syringae B728a]
          Length = 212

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 39  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 90

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L              +  
Sbjct: 91  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALTCAVR---------EDG 141

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T   
Sbjct: 142 QTDELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVE 201

Query: 236 AIAYAVRNNIV 246
            I  A RN +V
Sbjct: 202 LIEMAKRNALV 212


>gi|56459266|ref|YP_154547.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56178276|gb|AAV80998.1| Response regulator, LuxR family (CheY-HTH) [Idiomarina loihiensis
           L2TR]
          Length = 214

 Score = 86.9 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE--IGLLAAYQANM 172
                I                + R+   + ++        R  L +    ++   QA+ 
Sbjct: 84  DDVRPIQALNLGARGIIYENDHLDRVLTAIKVISQGELYYPRSLLSDKIEEMMLRRQADD 143

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
             +          LT +E++ +  ++ G  + EIA  L IS +TV  +++SI RKT  + 
Sbjct: 144 SFTTVSQINS---LTPQELKVIELVATGARNKEIAEHLNISAHTVKTHLSSIFRKTGARN 200

Query: 233 RSGAIAY 239
           R   + +
Sbjct: 201 RVELLKW 207


>gi|311695311|gb|ADP98184.1| regulatory protein, LuxR [marine bacterium HP15]
          Length = 900

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
           PV      +          + S       +R  L  L  KG   L +  ++  L      
Sbjct: 770 PVVALKILSTVVNEAAAEHFISPFR---ELRNELQELMTKGFGQLPEGAFKEAL--GEVF 824

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
            + +           ++ RE   L  I++G ++ EIA  L IS +TV  +   I  K   
Sbjct: 825 ELREVAGTLDTLAEPISEREQGVLELIAKGLSNQEIADKLHISLHTVKTHARRINAKLEV 884

Query: 231 KTRSGAIAYAVRNNIV 246
           K+R+ AI  A    ++
Sbjct: 885 KSRTQAIVRARELGLL 900


>gi|307311027|ref|ZP_07590671.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|306908533|gb|EFN39030.1| two component transcriptional regulator, LuxR family [Escherichia
           coli W]
 gi|315061704|gb|ADT76031.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli W]
 gi|323377715|gb|ADX49983.1| two component transcriptional regulator, LuxR family [Escherichia
           coli KO11]
          Length = 204

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +     + + +L  ++D+                +  LTE  G S    V   
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDI--------------EILAELTE--GGSAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIISAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                 +G L                K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSL-----------TSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM
           17093]
 gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM
           17093]
          Length = 508

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVH---WGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++ + +    ++                     L+ RE + L  ++ GK+++ IA  LG+
Sbjct: 414 QEVMSDTAWFSSQVLERLSQVRARKLERSALVTLSKRERQVLERLARGKSNEAIAAELGL 473

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  TV NYI+++  K   ++R+ A+ +A    ++
Sbjct: 474 ATQTVRNYISAVYDKLGVRSRAEAVVWARERGVI 507


>gi|290955466|ref|YP_003486648.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260644992|emb|CBG68078.1| putative LuxR-family regulator [Streptomyces scabiei 87.22]
          Length = 342

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 10/220 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMAL 92
             RM P     + T  ++     VG         D +        + +     L      
Sbjct: 110 AERMRPAGVRDAVTGALHHHGRLVGLITLSTATPDAYDTDTRR--LLASLLPALGVLADP 167

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------NRYCSLTFDVARIRIGLML 146
           +        L         V   + E       +        R      D    R  L L
Sbjct: 168 TAHAGDLPDLPSGGRASLAVADDVLELPGRDPALVLRDTEFRRLVRAFADSGGTR--LRL 225

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           L+P G    R  +    L +A        ++      + L+ RE+E LT  + G T+  I
Sbjct: 226 LWPVGPDWHRVTVRRHTLGSAVVRRAVLVHETPAPLPYGLSPRELEVLTRAATGMTNQAI 285

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S  TV+ ++  ++RKT   +R+ A A AVR+ ++
Sbjct: 286 AQALFLSPRTVHTHVEHLLRKTGAASRAEATALAVRDGLL 325


>gi|154252801|ref|YP_001413625.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154156751|gb|ABS63968.1| response regulator receiver protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 215

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 60/211 (28%), Gaps = 33/211 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFDLVRC 89
           +D        +  L    G                  D+     LD  +      D  R 
Sbjct: 11  VDDDARLREALGELLAAHGIDSRTFASAGDYMTAKKPDVPACLILDVELPDINGLDFQRQ 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +          ++      F      +P ++         + +  FD A +   + +   
Sbjct: 71  IVEGNHP---PIV------FITGHGDIPSSVRAIKEGAVDFLTKPFDEAHLMAAINVAIG 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +                    +     +    +  +LT RE E L  +  G  + + A  
Sbjct: 122 RD---------------REVRSRRAELNALQERYRDLTPREREVLPLVVSGLLNKQAAAQ 166

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LGIS  T+  +  ++M+K    + +  +  A
Sbjct: 167 LGISEVTLQIHRRNVMKKMEAASLADLVRIA 197


>gi|288927583|ref|ZP_06421430.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330417|gb|EFC69001.1| transcriptional regulator, LuxR family domain protein [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 318

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  + +G T+ EIA  L IS NTV  +  +I RK    + +G   YA+ NN+
Sbjct: 251 LSEREKEVIISLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAGLTIYAIVNNL 310

Query: 246 V 246
           V
Sbjct: 311 V 311


>gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus
           WK1]
 gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus
           WK1]
          Length = 89

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%)

Query: 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233
               +H  +   LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K R
Sbjct: 15  ARRVIHLNQKPLLTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGR 74

Query: 234 SGAIAYAVRNN 244
           S A+   +R  
Sbjct: 75  SQAVVELLRMG 85


>gi|207723944|ref|YP_002254342.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
 gi|206589151|emb|CAQ36113.1| hypothetical protein RSMK01425 [Ralstonia solanacearum MolK2]
          Length = 252

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 24/193 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D IV+ D+P + +  +          +++R      PV+    +   P A +D 
Sbjct: 48  AAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVY---FDAAAPAAEIDR 104

Query: 129 RYCSLTFDVA----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
            + +                              L       L   L ++  +       
Sbjct: 105 GWLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLASVNEPFLASVLRDLTPVLHRTLMR 164

Query: 173 FKSYDVHW-----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             +               L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM K
Sbjct: 165 AVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDK 224

Query: 228 TATKTRSGAIAYA 240
           T    R G    A
Sbjct: 225 TGCANRVGVAVLA 237


>gi|146283498|ref|YP_001173651.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145571703|gb|ABP80809.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
          Length = 872

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 13/149 (8%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLT----FDVARIRIGLMLLFPKGRIILRD 157
           L    +    V     E          ++               +  +L   KG  + + 
Sbjct: 733 LAEALQADGQVAEAELELRRALGEAARQHLVKPLYELHHRQPQWLSRILPAGKGESLRQR 792

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            L                  +    +  L+ RE+  L  I++G ++ EIA  L IS +TV
Sbjct: 793 LLK---------YEREPEISLPTADETVLSNRELTVLRLIAQGCSNQEIAEQLFISLHTV 843

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +   I  K     R+ A+A A     +
Sbjct: 844 KTHARRINTKLGVARRTQAVAKAKALAWL 872


>gi|187921892|ref|YP_001893481.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
 gi|187720330|gb|ACD21552.1| two component transcriptional regulator, LuxR family [Burkholderia
           phytofirmans PsJN]
          Length = 217

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 23/177 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +         + +  S       V+      F      +   +        
Sbjct: 55  PSCLILDVRLRGKSGMAFHQEIVNSGMLI--PVV------FMTGHGDIEMGVKAMKAGAL 106

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +  F    +   +     +    L       GL A+Y                 L+ 
Sbjct: 107 DFLAKPFKDQDMLDAVAQALAQDSGRLAAEAALTGLRASY---------------ECLSP 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE E + ++  G  + +IA  + +S  TV  + A +MRK   ++    +  A    I
Sbjct: 152 REKEVMGFVLSGLLNKQIASAMNLSEITVKVHRAQVMRKMNARSMPDLVRKAESLGI 208


>gi|313673833|ref|YP_004051944.1| two component transcriptional regulator, luxr family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940589|gb|ADR19781.1| two component transcriptional regulator, LuxR family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 209

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 73/244 (29%), Gaps = 39/244 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q  +I++  +       +  +   S + +++I           +               
Sbjct: 1   MQDCSILIVDDHPLFRKGIISVIEDSGIFSKIIESSTIKETFEILEK------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             +      LD  +      D++  +   +      +L   T     +   +        
Sbjct: 48  --EKVDFIILDLNLPDGDGVDIIDKITKGKGI---PILVITTYNSNIISRDVF------K 96

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
                Y +       +   +  +   G  +                +     D  +  + 
Sbjct: 97  KGAKGYIAKENVSDNLIDAVKTILLGGNYLD-------------ATDNVFENDDKYNTEL 143

Query: 184 -FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            F LT  E      ++EGKT  EIA   G S  TV N   +IM+K   KT    I  A++
Sbjct: 144 YFGLTNAEKIVFKMLAEGKTPKEIAYETGKSIKTVENQRGAIMKKLNFKTEVELIKLALK 203

Query: 243 NNIV 246
            NI+
Sbjct: 204 LNII 207


>gi|289804946|ref|ZP_06535575.1| transcriptional regulator FimZ [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 187

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 70/219 (31%), Gaps = 32/219 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++  ++++  E       +  L  ++  +  ++  D + +    +               
Sbjct: 1   MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTY------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F L++ +          + +    LF               
Sbjct: 49  ---PVDLVILDIELPGTDGFTLLKRIKS--------IQEHTRILFLSSKSEAFYAGRAIR 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              N + S   D+  I   + ++         + L        + +N       H   D 
Sbjct: 98  AGANGFVSKRKDLNDIYNAVKIILSGYSFFPSETLN-------FISNTRPPKGGHH--DM 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
            L+ REV  L +++ G ++ EIA  L +S  T++ + A+
Sbjct: 149 PLSNREVTVLRYLANGMSNKEIAEQLLLSNKTISAHKAN 187


>gi|88703632|ref|ZP_01101348.1| two-component response regulator [Congregibacter litoralis KT71]
 gi|88702346|gb|EAQ99449.1| two-component response regulator [Congregibacter litoralis KT71]
          Length = 219

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 64/227 (28%), Gaps = 29/227 (12%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +       +S L + SD+ A +   +                   H L+ +     
Sbjct: 4   IIADDHPLFRDALSMLLSGSDIDADISHAENVAEL--------------HDLVEKDGAPD 49

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              LD  +     F  +             V+     +                     +
Sbjct: 50  LLLLDLHMPGASGFSALGWFV--GNYPDKPVIIVSAHVQ------ADTVRRAIDHGAAAF 101

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
            S +     +   +  +    R +          L   ++               LT ++
Sbjct: 102 LSKSSGTDVMTACIRDVLAGNRGLHPG-------LDISESGASLKALDVADALASLTPQQ 154

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               + + EG  + +IA  LG+   T+  ++  + RK   ++R+ A+
Sbjct: 155 FRVASMLVEGLLNKQIAYELGVKEATIKAHMTEVFRKLGVQSRTQAV 201


>gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 788

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 35/62 (56%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +LT R+VE L  ++EG T  EIA  L IS  TVN ++  I  K    TRS A  YAV   
Sbjct: 727 QLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAVERK 786

Query: 245 IV 246
           ++
Sbjct: 787 LI 788


>gi|255011703|ref|ZP_05283829.1| LuxR family regulatory protein [Bacteroides fragilis 3_1_12]
 gi|313149537|ref|ZP_07811730.1| two-component transcriptional regulator [Bacteroides fragilis
           3_1_12]
 gi|313138304|gb|EFR55664.1| two-component transcriptional regulator [Bacteroides fragilis
           3_1_12]
          Length = 215

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 59/224 (26%), Gaps = 17/224 (7%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYAL-TEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + +    D    +  +   +     +        G     L+    +    LD  +    
Sbjct: 5   AEILLVDDHALILEGMQRMLELVPGVKVADAVTSGTRAAELIGERDYDIYVLDVSLPDIS 64

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
            FDLV  +            +    +   +   +           N     + +   I  
Sbjct: 65  GFDLVDMIREIN--------ESARIIISTMHEEIWIINRLIRQKVNAVILKSSEAMEIGN 116

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +                              V        T RE++ L  ++ G  
Sbjct: 117 AVKSVLAGDSYACPR--------FKSIRQRLSLSPVQIHPKDIPTKRELDVLKAVARGCN 168

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + E+A  L IS NTV  +   +++K   K     +  A+    +
Sbjct: 169 THEVAAELKISENTVETFRKRLIQKFCAKNAIDMVVKAMAKGWI 212


>gi|238796258|ref|ZP_04639768.1| Virulence factors putative positive transcription regulator bvgA
           [Yersinia mollaretii ATCC 43969]
 gi|238719951|gb|EEQ11757.1| Virulence factors putative positive transcription regulator bvgA
           [Yersinia mollaretii ATCC 43969]
          Length = 190

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 59/199 (29%), Gaps = 17/199 (8%)

Query: 49  MYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTE 107
              + E   G +   L R        LD  +      +++  +      +          
Sbjct: 8   FRVIAEADCGLTAMKLARQHHPDLIVLDIAIPKMDGLEVISRLHDIGLSQ--------RI 59

Query: 108 LFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167
           L      +    +         + S T  +  +      +                 L+ 
Sbjct: 60  LVLTSQLSDYYAVRCMRLGATGFVSKTEGLNELSKAANAIMSGYTYFPN--------LSI 111

Query: 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                             L+ RE+  L +++ G T+ EI+ ++ +S  T++ +   ++ K
Sbjct: 112 NAITRSDVGIQESDAIKLLSNREISILQYLAMGMTNKEISDLMLLSNKTISTFKTRLIEK 171

Query: 228 TATKTRSGAIAYAVRNNIV 246
              K+       A RNN++
Sbjct: 172 LNVKSVVHLAELAKRNNLI 190


>gi|222106537|ref|YP_002547328.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737716|gb|ACM38612.1| two component response regulator [Agrobacterium vitis S4]
          Length = 212

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 32/227 (14%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQ 72
            +++ P + +    +  +D   S    +  L   VG +                D     
Sbjct: 1   MMANPPQQDEHEPVVYVIDDDASVRAALEDLLASVGLAVCAYGSIQEFMAMPLADAPGCL 60

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +      +  + M             R   +F      +P ++         + +
Sbjct: 61  VLDVRMPGQSGLEFHQQMTKLGI--------RLPVIFITGHGDIPMSVKAMKNGAIEFLT 112

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
             F    +   +                       + ++  +           LT  E E
Sbjct: 113 KPFRDQDLLDAIQQGIEND---------RAQRRQDHLSSGLRELWQ------TLTPGERE 157

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  + +G+ + +IA  LG+S  TV    A +MRK   K+ +  +  
Sbjct: 158 VMELVVQGRLNKQIAGDLGVSEITVKVRRAQLMRKLNAKSVADLVRI 204


>gi|93009154|gb|ABE97931.1| GacA [Pseudomonas sp. RR3-2-29]
          Length = 182

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 17/196 (8%)

Query: 38  PLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   ++    +  + +   G    +  R        +D  +      +  R +  S   
Sbjct: 2   GITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLEATRKLLRSH-- 59

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                ++      C      P            Y +    +  +   + L+F   R I  
Sbjct: 60  ---PDIKVVAVTVC---EEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFAGQRYISP 113

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++ + +    N              L+ RE++    I   +    I+  L +S  T
Sbjct: 114 QIAQQLAIKSFQPTN--------DSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKT 165

Query: 217 VNNYIASIMRKTATKT 232
           VN Y   I  K +  +
Sbjct: 166 VNTYRYRIFEKLSITS 181


>gi|158314101|ref|YP_001506609.1| two component LuxR family transcriptional regulator [Frankia sp.
           EAN1pec]
 gi|158109506|gb|ABW11703.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EAN1pec]
          Length = 250

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 65/253 (25%), Gaps = 43/253 (16%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +++  +D    S ++ +   +D    +            + AL              
Sbjct: 12  PVRVLVVDDDALVRSALAMMFDGADGARIVGEATDGDEVAAAVDAL-------------- 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  ++          +   ++            +    F    + +      
Sbjct: 58  -RPDVVLMDIRMARVDGLRATELLLARDQPPQ--------VVVLTTFDADDQVLRALRAG 108

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI--------------------GLLA 166
            + +       A I   ++ +     I+      ++                       A
Sbjct: 109 ASGFLLKDTPPAEIVRAVLRVAAGEPILSPTVTRQLIARIAAVEAAPPPDAPPPAVAAQA 168

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
                             +L+ RE E    +  G ++ EIA  L +S  T  +Y++ ++ 
Sbjct: 169 VAAERSAARRTAARQAVAQLSAREREVALAVGRGLSNAEIAGELFMSVATAKSYVSRLLT 228

Query: 227 KTATKTRSGAIAY 239
           K A   R      
Sbjct: 229 KLALSNRVQLALL 241


>gi|290958464|ref|YP_003489646.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647990|emb|CBG71096.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 213

 Score = 86.9 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 70/242 (28%), Gaps = 29/242 (11%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++QV+         R      +    + L  ++ L+  +     +       G       
Sbjct: 1   MEQVDETEGSPAVIRVLVAEDMHLLREALVGVLRLEGDIDVVAELDR-----GDQIIESA 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
              +     +D  +           +           L R   L      +         
Sbjct: 56  LETVPDVALVDIDLPGTDGITAAARLREL--------LPRCRVLVVTGLASPGNIRRAME 107

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +      + ++   +  +    R+I  +                       G   
Sbjct: 108 AGTAGFLLKDTPLDQLVTAIRRVATGERVIDVELATV----------------ALKGSAS 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE E L + +EG  + EIA  L +  +TV NY+++++ K+  + R  AI  A+   
Sbjct: 152 PFTRREAEILRFAAEGAPAQEIAGRLRLELSTVRNYLSTVVAKSGARNRVDAIRIAMAEG 211

Query: 245 IV 246
            +
Sbjct: 212 WI 213


>gi|322383304|ref|ZP_08057104.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152424|gb|EFX45223.1| two-component response regulator YvqE responding to cell wall
           stress-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 872

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +   L+ RE+E L  ++ G+ + EI   L IS  TV +++ +I  K    
Sbjct: 797 RSLPLASAEQETAILSKRELEVLQVLAAGRRNKEIGKELCISLATVKSHVINIYSKLQVS 856

Query: 232 TRSGAIAYAVRNNIV 246
            R  A+       ++
Sbjct: 857 NRVEAVERGRELRLL 871


>gi|284992384|ref|YP_003410938.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065629|gb|ADB76567.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 236

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 62/206 (30%), Gaps = 11/206 (5%)

Query: 35  RMIPLDCTVSWTMRMYALT-EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           R++ L         + ++  E  G                +++        +L +  A +
Sbjct: 14  RVLILADAPVLRRGLVSMINETAGMQSVGTPGELRRALTLVETARPDTVVVELGQGRAAT 73

Query: 94  EKDKYYNVLQRPTEL--FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                    + P                    A     Y  +      +   ++      
Sbjct: 74  LNACRDLRRRFPRVTIVALGTSEDPAVVNEALAAGVRGYLMINTSPTLLGWAILAARAGR 133

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
            ++                         +  +  LT RE + L  + +G+++ +I   L 
Sbjct: 134 TVVDPQIRR--------VEPSAAPAAKPFAPEVPLTRRESDVLDELIQGQSNRQIGRNLF 185

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAI 237
           IS +TV +++ +I+RK   + R+ A+
Sbjct: 186 ISEDTVKSHVKAILRKLGARDRAHAV 211


>gi|314991314|ref|ZP_07856793.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594087|gb|EFR72932.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 15/185 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              +L           D  +      D  + +             +   L    F     
Sbjct: 38  DALVLYETHRPDVLLTDIRMPKKTGIDAAKEILAK--------FPKAILLLLTTFKDEEY 89

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                +     Y     ++  I   +   +    +       EI            + D 
Sbjct: 90  IREAFSIGVKGYLIK-QNLQAIIPSVKSAYNGQAVFG----NEIIETFTQMMKNKPTIDS 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    F  + RE+  +  ++ GK + EIA  L +S  TV NYI+ ++ K   + R+    
Sbjct: 145 HAYASF--SERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAI 202

Query: 239 YAVRN 243
           Y  ++
Sbjct: 203 YFYQH 207


>gi|304395728|ref|ZP_07377611.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
 gi|304357022|gb|EFM21386.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           aB]
          Length = 193

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 65/228 (28%), Gaps = 45/228 (19%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           ++L  +       +    ++S +  +++      +    +                    
Sbjct: 4   LLLIDDHPLVEVALEAALSQSPIPVQLLSASSEKAARPLLQQ----------------SL 47

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      + +R + +        VL    +                A     
Sbjct: 48  DIIVLDIGLPDSDGLEFLRRLKIHR--PDCPVLIYSAQQT------RHYVRRAQALGAAG 99

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y   +  +A++   ++ +                              +    +  LT +
Sbjct: 100 YVVKSQRMAQLLSAILAVLGGQTAFPE---------------------MDDEPELPLTQK 138

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E + L  ++ G ++ +IA  L IS  TV+ +  +I+ KT  ++     
Sbjct: 139 ERQILALLASGLSNLQIAAQLHISNKTVSTHKKNILEKTGARSVVELA 186


>gi|261251800|ref|ZP_05944374.1| response regulator VbsA [Vibrio orientalis CIP 102891]
 gi|260938673|gb|EEX94661.1| response regulator VbsA [Vibrio orientalis CIP 102891]
          Length = 199

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 25/213 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGAS-HFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D       L   +        + +   A   F+ +  +      LD  +  D  F
Sbjct: 3   ILIVDDHPLVCAALKNVIEDNFENATIVQAFNAKKAFVYLAENKVDILILDIELGDDDGF 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+        D           +          +    +   + Y      V+R+   +
Sbjct: 63  DLLHKAKGFGFD--------GKVIVVSSKDEKLCSDLAISAGASGYLDKKESVSRVADAI 114

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +        +                            +L+ RE   L  + +G T+ 
Sbjct: 115 KAVNSGYTYFRQANAA----------------STQGTGAIKLSTRESSVLRLLLDGHTNK 158

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           EIA  + IS  TV+ Y   I+ K   ++    +
Sbjct: 159 EIARRMDISEKTVSTYKRRILDKYDVRSVFMLV 191


>gi|189460662|ref|ZP_03009447.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136]
 gi|189432621|gb|EDV01606.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136]
          Length = 250

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E L  I  GK+S EIA  L +S +TV+ +  +I++K      + A   A   ++
Sbjct: 190 LSRREKEILILIGRGKSSKEIAEELSLSIHTVSRHRQNILQKLQVSNSAQAFGIARELHL 249

Query: 246 V 246
           +
Sbjct: 250 L 250


>gi|322377956|ref|ZP_08052444.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
 gi|321281132|gb|EFX58144.1| putative DNA-binding response regulator VraR [Streptococcus sp.
           M334]
          Length = 201

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 27/223 (12%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW-DLFQEQKLDSIVSSDWP 83
            L    D    +  L+           +  Y   +  LL    +      +D ++     
Sbjct: 3   RLVLIDDHSLVLQGLENYFLKEDDFEIVGSYTEVADLLLCLKNEKVDVLVMDFMLKGVTA 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
           FD++  +  +        +          + TL        G+   +         ++  
Sbjct: 63  FDVISQI--NRFLNTVPKIVLL----SGFYDTLLHKRAMDFGI-QAFLPKESSYLDVKSA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++    +I    L +                    ++  LT  E+  L  I +  ++
Sbjct: 116 IYAVYKGNHVIPDGLLEK-------------------QENNLLTDMELSVLELIVKEYSN 156

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++IA  L +SR TV+ ++++I  K    +R GA+  A+R N+V
Sbjct: 157 EKIANSLFVSRRTVDTHVSNICSKLGVTSRVGAVREAIRLNLV 199


>gi|302345391|ref|YP_003813744.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149568|gb|ADK95830.1| hemerythrin HHE cation binding domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 318

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+
Sbjct: 247 SNEVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAI 306

Query: 242 RNNIV 246
            NN+V
Sbjct: 307 VNNLV 311


>gi|284045808|ref|YP_003396148.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950029|gb|ADB52773.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM
           14684]
          Length = 302

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 5/233 (2%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE 71
           L R  E     VSH+         +   D        +  L        + LV  D+   
Sbjct: 64  LGRASELDRVLVSHVRDGELHAHALWERDADDDAAQTLARLRAASIPLRYPLVEADVATR 123

Query: 72  QKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            +   +  +         +          V     +             +     +    
Sbjct: 124 PRAVLVDVAGDGPRPAPAITERFGWSECVVAAIVVQRTTIGLLHAGTGASGRMLREADRE 183

Query: 132 SLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANM---FKSYDVHWGKDFEL 186
            +   V  +         +  +     +    +  ++A+  +                EL
Sbjct: 184 LVELYVDGLAGAFERAVLRDTLQRHRDELDAAVRWMSAHVGDRRDVPLMASAAAAATGEL 243

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T RE++ L  ++ G+T+ EIA  L IS  TV +++ +++RK     R+ A+A 
Sbjct: 244 TARELQVLELLATGRTNAEIATALMISEGTVKHHVKNLLRKLNASNRADAVAR 296


>gi|226326299|ref|ZP_03801817.1| hypothetical protein PROPEN_00147 [Proteus penneri ATCC 35198]
 gi|225205250|gb|EEG87604.1| hypothetical protein PROPEN_00147 [Proteus penneri ATCC 35198]
          Length = 205

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           IT        +  +      I   +  +    R I ++   EI L               
Sbjct: 76  ITLLQLGIEGFIIVDTSCENILQAIRQVCIGQRYISQELAMEIALT---------KLQQE 126

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                 L+ RE++ ++ I  GK   +IA  L I+  TVN+Y   +  K            
Sbjct: 127 LNPLHHLSERELQIMSMIIRGKKITQIASELNINTKTVNSYRYRMFSKLKISGDVELTHI 186

Query: 240 AVRNNIV 246
           A+R  ++
Sbjct: 187 AIRYGLI 193


>gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
 gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein
           [Porphyromonas uenonis 60-3]
          Length = 201

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +    K   L+ RE E +TW++ G T+ EIA +L +S +TV  +  +I  K    + SG
Sbjct: 123 IESDESKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSPSG 182

Query: 236 AIAYAVRNNIV 246
              YA+ NN++
Sbjct: 183 LTIYALMNNLI 193


>gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 153

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           + D    ++  +T RE+E LT ++ G ++ EIA  L +S NTV  + A    K     R+
Sbjct: 81  APDTARQQELGITAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRT 140

Query: 235 GAIAYAVRNNIV 246
            A+       ++
Sbjct: 141 QAVQRGKELGLL 152


>gi|319795298|ref|YP_004156938.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597761|gb|ADU38827.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 198

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 43/239 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           ++I +  +       +  +  R      ++ L+        +    +  GA     +   
Sbjct: 1   MSIYVIDDHPLMRDAIVMVLRRLRPAENIVELERLDKLASSV----QQRGAPTLFCLDLK 56

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
           L     +  +++                 + Y  +        P                
Sbjct: 57  LPDTNGVSGVIA---------------VKQVYPNVPIAVYSAAPAAD---MEDACIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   +     +   L                             +  D       +L+
Sbjct: 99  DTYIEKSASSNELAAALR---------------------GLLMAGSEEADEPPLASSKLS 137

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            R+ + +  + +G ++ +IA  L IS +TV  ++  + R+   K+R+ A+ YA  N ++
Sbjct: 138 KRQTQLIAMLDKGMSNRDIATDLEISEHTVKVHLWRLFRRLGVKSRTQALHYARTNGLL 196


>gi|256838723|ref|ZP_05544233.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739642|gb|EEU52966.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 254

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 32/71 (45%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  D +LT RE E L  I +G  S EIA  L +S  TVNN+  +I+ K        
Sbjct: 183 ASAVVPADQQLTKREKEILLLIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDNVIE 242

Query: 236 AIAYAVRNNIV 246
           AI  A    I+
Sbjct: 243 AINRAESFGIL 253


>gi|167572464|ref|ZP_02365338.1| transcriptional regulator, LuxR family protein [Burkholderia
           oklahomensis C6786]
          Length = 347

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/268 (11%), Positives = 66/268 (24%), Gaps = 26/268 (9%)

Query: 4   EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           E Q +++V      +          R  +   +     T        +L   +G + F  
Sbjct: 81  EAQTIDVVWCGHARRAADAEPRFAPRLGVAEMLASARGTAECGRIATSLLRLMGFATFAY 140

Query: 64  VRWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
              +  ++      +   + P                  +        PV   L   +  
Sbjct: 141 FAIEFSRDDAECLYLHEAFTPAAYRGDYVRRRHHDVDPRMLGTRASSMPVVWDL-RQLAR 199

Query: 123 PAG-----MDNRYCSLTFDVARIRIGLMLL----------------FPKGRIILRDRLWE 161
                     + +  +  D       +  +                      I    L +
Sbjct: 200 DHASRGSDALDGFLRVMHDDDMCSGVMYSMPVPGTRMHAFASYTAPRRSRDWISSATLEQ 259

Query: 162 IGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +  L                       LT  E E L  I+EG +  EI   L  S + V+
Sbjct: 260 VLSLGLSVHRFAAPQLIASSRERAAERLTPFERELLVGIAEGASDKEIGRRLDTSAHNVD 319

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++  + ++     R     +A    ++
Sbjct: 320 YHLRKLRKRFGVANRIQLTYFASARGLI 347


>gi|51892161|ref|YP_074852.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855850|dbj|BAD40008.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 206

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 29/230 (12%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           ++R   V       + L ++I  D  +       A+ E V  +  L           LD 
Sbjct: 5   KRRILLVEDQTVVREGLRQLIESDADMEVVGEAAAVAEAVALAARL-----RPDVVLLDL 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            ++     D  R +              P  L    +       +  A   + Y   T  
Sbjct: 60  KLADGSGLDAARQI----LQGSDP----PAVLVLSTYADAALVRSALAMGASGYIPKTAS 111

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
            A I   +      G +I      ++                    +  L   E+  L  
Sbjct: 112 FAEIASAVRTAAQGGVVIHPSLAGKLAGRG----------------EETLREEEIAMLRM 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++EG +  EI   L +S  TV  ++  +  K   + R+ A+A A+R  ++
Sbjct: 156 LAEGASYAEIGNRLYLSERTVRRHMNLLFDKMGVQNRTQAVAEAMRRGLL 205


>gi|91229424|ref|ZP_01262925.1| response regulator [Vibrio alginolyticus 12G01]
 gi|91187399|gb|EAS73752.1| response regulator [Vibrio alginolyticus 12G01]
          Length = 161

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 16/168 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G       R +      +D  +      +  + +     D           +   V    
Sbjct: 10  GEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPD--------VKIIVLTVHTEN 61

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
           P          + Y +       +   + ++    R I  +   ++ L     A+     
Sbjct: 62  PFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASE---- 117

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                   +L+ RE++ +  I++G+   +I+  L +S  TVN+Y   +
Sbjct: 118 ----NPFKDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRL 161


>gi|254515317|ref|ZP_05127378.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3]
 gi|219677560|gb|EED33925.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3]
          Length = 203

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 2/122 (1%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           E     +     YC       ++     ++   G  + RD L  I  L            
Sbjct: 77  EAFQLLSMGVRGYCHAEAVPEQLVEVAEVVSAGGLWMPRDLLQRISELGKRVDAQSADRS 136

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE E    +  G  + E+A  LG+S  TV   + SI  K   + R    
Sbjct: 137 PRHFE--GLTPREEEVALLVGRGYNNRELAEALGVSERTVKANLTSIFDKLGLRDRVQLA 194

Query: 238 AY 239
            Y
Sbjct: 195 LY 196


>gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 215

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 9/212 (4%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           R++       +   + ++   + A   + V         LD   +     D+    A S 
Sbjct: 2   RILVTGEQPIFCEGLSSIVNRLYAGATVRVVAGPRSLSGLDVGTAELVLLDIGAGQAPSG 61

Query: 95  KDKYYNVLQRPTELFCPVFHTLP--ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            D   + + R                           +   T  V  +   L L+   GR
Sbjct: 62  ADLLSDFVSRTEAKVVVFSDRSAPGYIRQVMDLGVAGFVPKTIGVTLVESALRLIELGGR 121

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILG 211
            I         LL A+     ++ D   G   E LT R+ E L  + +G+++ EIA +LG
Sbjct: 122 YIPD------ILLTAHAEGFAETTDSFLGAGHEKLTPRQREVLLELGKGRSNQEIAHVLG 175

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           IS  TV  ++ +I++    + R+ A   A+R 
Sbjct: 176 ISIATVKLHVNAILQTLGVRNRTEAAIIALRA 207


>gi|27381401|ref|NP_772930.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354569|dbj|BAC51555.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 274

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 36/239 (15%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++++V+          +S +         +   +   S    +  L            
Sbjct: 47  MRRISVVIADRHPVVLEGLSKVLGAVADFNIVASCNDAASCIEAIRRLA----------- 95

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    +D  +       ++  +                      F    +     +
Sbjct: 96  ----PDMAIVDPAMPGLAAAKILSTVNSEN-----------RSTHLVFFVASEDCELVFS 140

Query: 125 G--MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
              +         D   +   L  +     ++           +   A+  +  +   G 
Sbjct: 141 ATPVTCSIILRDTDSEALVESLRHIANGHNVLPS-------TPSESIASREQGTNSESG- 192

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
              LT RE + +  +SEG ++ EI   L  +  T+  ++ +I +K     R+   A A+
Sbjct: 193 LTTLTERERQIMRLVSEGLSNKEIGRRLNTTDGTIKVHLHNIFQKLEISNRTVLAALAI 251


>gi|325298451|ref|YP_004258368.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
 gi|324318004|gb|ADY35895.1| transcriptional regulator, LuxR family [Bacteroides salanitronis
           DSM 18170]
          Length = 202

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            D        L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    + +G
Sbjct: 123 SDDEEDDQDALSQREKEIICCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAG 182

Query: 236 AIAYAVRNNIV 246
              YA+ N +V
Sbjct: 183 LTIYAIVNKLV 193


>gi|307700670|ref|ZP_07637697.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614147|gb|EFN93389.1| response regulator receiver domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 220

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 63/240 (26%), Gaps = 24/240 (10%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           + + +++  +D       + L    D +              +M                
Sbjct: 3   EDIRVLIADDDPIIHDSFARLLDSQDGIKVEATASNGAEALTKMTR-------------- 48

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   +D  +      +  + +  S          + T +    F          A 
Sbjct: 49  --GIDVALIDVDMPILDGIEAAKLIRKS--------YPQTTIIMLTAFEHEDSLAQALAA 98

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + +       I   L        +        +      +A     Y         
Sbjct: 99  GVQGFLTKNTTPKEIAEYLKKARAGTTVFDTRPTTILTESYTEKALTQAQYADFINAVNT 158

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  R     T + + KT+ EIA  L +S  TV +Y++ I+  T  K+R      A R  I
Sbjct: 159 LPQRLQPVFTQLLDAKTNKEIAQELHMSPTTVRSYVSEILAHTGCKSRGQLAITAARAGI 218


>gi|293605323|ref|ZP_06687708.1| transcriptional regulatory protein FixJ [Achromobacter piechaudii
           ATCC 43553]
 gi|292816262|gb|EFF75358.1| transcriptional regulatory protein FixJ [Achromobacter piechaudii
           ATCC 43553]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 54/226 (23%), Gaps = 28/226 (12%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL--FQEQ 72
               RT  V H P    +       D        +   +   G     L +         
Sbjct: 3   PSPART--VQHSPLVYLVDDDDAVRDALALLLRSVGLASSGFGDPQAFLSQLPASAIGCV 60

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  +      D++  +A         V+             +        G    +  
Sbjct: 61  VLDIRMPGISGLDVLSRLAEQS---DLPVV------MLTGHANVDLCRRAFKGGAMEFLQ 111

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
              D       +                                     +   L+GRE +
Sbjct: 112 KPVDDDVFLDAVQAAVRTHIA---------------SRERLAVSQAAADRLARLSGREHD 156

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            L  I  G ++ EIA    +S  TV  Y A++  K    + +  I 
Sbjct: 157 VLERIVRGMSNKEIAREFDLSPRTVETYRANVFAKLEADSLAQLIR 202


>gi|325678873|ref|ZP_08158471.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
 gi|324109377|gb|EGC03595.1| transcriptional regulator, LuxR family [Ruminococcus albus 8]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 21/176 (11%)

Query: 72  QKLDSIVSSDWPFDLVRCMALSE-KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            ++D I+      D    +  +E        ++       P +          +     +
Sbjct: 48  HQVDLILMDILMNDGSNGLDAAEKIKSLRPEIKIIAVTSMPEY---SWLEKAKSIGIESF 104

Query: 131 CSLTFDVARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                D   I   +   +             ++GL                    E T R
Sbjct: 105 WYKEADEQTILEVMDRTMAGDHVYPRSSPTVKLGLA----------------DSSEFTER 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+E L  ++ G T+ ++A  LGIS NTV +++ S++ KT  ++R+     A    I
Sbjct: 149 ELEILRVVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKARVIGI 204


>gi|288961802|ref|YP_003452112.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914082|dbj|BAI75568.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 300

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 72/256 (28%), Gaps = 24/256 (9%)

Query: 6   QQVNIVLNREDEQRTSFV----SHLPTRSDLLARM-IPLDCTVSWTMRMYALTEYVGASH 60
            ++ ++++ +       +           D   R+   L     W+ R+ A  +      
Sbjct: 42  DRIRVIVHNQSRLLRESILNILDDCFEVIDPQRRLVSGLSPKTLWSGRVNASGDRHSTGG 101

Query: 61  FLLVRWDLFQEQKL----DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
            ++               D ++        +  +     +      ++          + 
Sbjct: 102 AVVTLEPPDGGHGAERPADIVLFD------LASLKTDAWNFRSWYGEQAKLAMIADEFSA 155

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y       A   + L L+     ++  +        +          
Sbjct: 156 HHMRMALRFGVRGYLLNRMAPAAFVLSLRLIHAGEPVVPEE---CFDYFSPSALRRGAED 212

Query: 177 DVHWGKDFEL------TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                 + EL        R    L  I +G ++ EIA  + ++ + V  ++  IM+    
Sbjct: 213 GSVPQHETELLGYPGLYPRHARILKLIMDGCSNKEIAREMAMTEDLVKLHVRHIMQTINV 272

Query: 231 KTRSGAIAYAVRNNIV 246
           + R+ A  +A ++ I+
Sbjct: 273 RNRTQAALWAAQSGII 288


>gi|217969886|ref|YP_002355120.1| LuxR family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507213|gb|ACK54224.1| two component transcriptional regulator, LuxR family [Thauera sp.
           MZ1T]
          Length = 247

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 53  TEYVGASHFLLVRWDLFQEQ--KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
            E  G++   L R  + +     LD  +      DL   +                 ++ 
Sbjct: 41  VEAFGSAPEFLQRLPIIEHGCMLLDVQMPVVTGPDLHGELLARGI--------ALPVVYL 92

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                LP  I         +     D + +   L     +  ++                
Sbjct: 93  TAHGDLPTGIRAMKNGAVDFLQKPVDESVLVDTLREALARHAVL---------------Q 137

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +  +  D    +   L+GRE E L  + +G+ + +IA  LGIS  TV  + A++M+  A 
Sbjct: 138 SRDQQVDEIADRLAALSGREREVLKLVIDGRLNKQIADDLGISIKTVKVHRANMMKTMAV 197

Query: 231 KTRSGAIAYA 240
           ++ +  +   
Sbjct: 198 RSVAELVHLC 207


>gi|154252773|ref|YP_001413597.1| two component LuxR family transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156723|gb|ABS63940.1| two component transcriptional regulator, LuxR family [Parvibaculum
           lavamentivorans DS-1]
          Length = 210

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 66/239 (27%), Gaps = 30/239 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +    I++  +       + H+  R    A +              +             
Sbjct: 1   MSAERIIVADDHPVFRMGMRHILARVSPGAAIEEAGTFEEVLTLAESGA----------- 49

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD I         +  +             R T     +           A
Sbjct: 50  ---APGMFVLDLIFPGFAAETSIAALRRR--------FPRATLAIVSMADDSETIDVVMA 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +         I   +  +     ++           AA+      +       D 
Sbjct: 99  AGADGFVGKAVPPDEIAEAIGAIHDGEIVVKSA--------AAHLPTPGGARTGAGESDV 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           +L+ R+ E L  ++ G T+ EI   LGIS  T   ++++++R     +RS A   A++ 
Sbjct: 151 QLSPRQREVLKLVAAGMTNKEIGRELGISPVTARMHVSALLRTLGVASRSAAAGVAMKL 209


>gi|107025864|ref|YP_623375.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU
           1054]
 gi|116692952|ref|YP_838485.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737783|ref|YP_001779043.1| LuxR family transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895238|gb|ABF78402.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU
           1054]
 gi|116650952|gb|ABK11592.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           HI2424]
 gi|169819971|gb|ACA94553.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia
           MC0-3]
          Length = 302

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 62/272 (22%), Gaps = 39/272 (14%)

Query: 14  REDEQRTSFVSHLPTRSDLLAR---------MIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           RE   +  +   +    D             +     T      + +L    G S F   
Sbjct: 31  RERPVQVVWCDDVKRGDDAQPHAPKLGVADTLAHAQSTAERNRIVTSLLHLTGFSTFAYF 90

Query: 65  RWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--- 120
             +  +E+     +   + P                           P+   L +     
Sbjct: 91  ALEFARERVESLYLHEAFTPATYRGDYVRHNHHDVDPRTLGARVCNMPIVWDLQQLRREH 150

Query: 121 --------------------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRD 157
                                   GM +                M           I   
Sbjct: 151 RERDDAPSVSPAALDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITPA 210

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISR 214
            + +   +            +   ++     LT  E E L  I+EG +  EI   L  S 
Sbjct: 211 TIEQALSIGLSVHKFASPQLISTSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTSA 270

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + V+ ++  + ++     R        +  ++
Sbjct: 271 HNVDYHLRKLRKRFGVANRIQLTYLTSKLELI 302


>gi|298483146|ref|ZP_07001326.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
 gi|298270663|gb|EFI12244.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. D22]
          Length = 200

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 35/80 (43%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y      S          L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 116 GYPVKDMPSMPPTQPHQEILSSREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 175

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 176 KLGIKSVSGLTIYAVMNGYI 195


>gi|261211707|ref|ZP_05925994.1| tetrathionate reductase two-component response regulator [Vibrio
           sp. RC341]
 gi|260839057|gb|EEX65689.1| tetrathionate reductase two-component response regulator [Vibrio
           sp. RC341]
          Length = 200

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 55/204 (26%), Gaps = 26/204 (12%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLV----RWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           +D  ++    +  L E  G                  Q+   +V       +        
Sbjct: 11  VDDEINVLESLQFLLESYGYQLQAFSCGQQFLQQVDAQQAGCVVLDSRMPGINGQEVQRW 70

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
            +++         ++      +P  +         +     D   +   +         +
Sbjct: 71  LNQH---HSPLGIIYLTGHGDVPMAVEALKEGACDFFQKPVDGDALVKAI------DHAL 121

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
            +                         K   LT RE +    + +G  + E+A  L +S 
Sbjct: 122 EQSETR-------------AEQYNMQSKLKSLTKRERDIAELVVKGMKNQEMADALCVSL 168

Query: 215 NTVNNYIASIMRKTATKTRSGAIA 238
            T+  + A++M+K      +G I 
Sbjct: 169 RTIEVHRANVMKKLEVSNIAGLIR 192


>gi|239930775|ref|ZP_04687728.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 259

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 58/228 (25%), Gaps = 3/228 (1%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + ++ +++  +       ++        +          +      A  E       L+ 
Sbjct: 1   MVRIRVLVVDDHRIFAESLAAALAAEPDVDVSAAGSGPAALRCLERAAAEGRRFDVLLVD 60

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +       V      +      +S      +   +   +                
Sbjct: 61  ADLGGKVPGGRPAVPVQDGDEDGLVDGMSLVTGVRSAQPQVRIVVLAEKDDPRRAALALQ 120

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + +    + R+   +  +      +    L  +              +       
Sbjct: 121 AGASGWVAKDCSLNRLLTVIRGVLRDETHLPPALLTGVLRELTAARRHRTESERLVES-- 178

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
            LT RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 179 -LTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 225


>gi|209547799|ref|YP_002279716.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533555|gb|ACI53490.1| two component transcriptional regulator, LuxR family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 215

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 63/234 (26%), Gaps = 30/234 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +Q+  I++  +       +       +    ++      +      A  E          
Sbjct: 1   MQEQTIIIADDHPLFRDALRQAVIGMEGRQAIVEAGDFAAARKAAGAHAEA--------- 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                    LD  +     F  +  +                 +                
Sbjct: 52  -----DLMLLDLAMPGVSGFSGLMALRSE--------FASLPIIIVSATDDATTIRRALE 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + + S +  +  IR  +  +         +                        +  
Sbjct: 99  LGASGFISKSAGIDDIRRSIQTVLAGDIATPENYRGG--------QEQDPDVADLIHRLH 150

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
            LT ++   LT + EG  + +IA  LG+S  T+  ++++I+ K    +R+ A+ 
Sbjct: 151 TLTPQQSRVLTMLGEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAVI 204


>gi|302337265|ref|YP_003802471.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM
           11293]
 gi|301634450|gb|ADK79877.1| two component transcriptional regulator, LuxR family [Spirochaeta
           smaragdinae DSM 11293]
          Length = 206

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 59/189 (31%), Gaps = 16/189 (8%)

Query: 51  ALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110
           A  +       +           ++ I  S    + ++ +   E D    +L    +   
Sbjct: 28  AFIDCHTGEGDVFDELRECDLIIMELIFRSCSGLEFIKSLRDHEIDI--PILVFTMQN-- 83

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                              Y  ++  +  I   L  +  +   + R+       +A   A
Sbjct: 84  ----EEHFAERSLKAGATGYLMMSSAIEEIGYALKTVLNRRCYVSRN-------IAEKMA 132

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
           +              L+ RE++ L  ++ G ++ +IA  L +S  TV+ Y + IM K   
Sbjct: 133 DRL-HGTGGNMPIERLSDRELQVLLLLASGISNSDIAQNLCLSPKTVSTYKSRIMEKMDF 191

Query: 231 KTRSGAIAY 239
                 + Y
Sbjct: 192 HNDKEILLY 200


>gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 245

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 23/242 (9%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
           +      DL+  ++ +    ++   +    E +G    ++      +      I S +  
Sbjct: 7   TDYKAVLDLVTTLVNVKSISAFAEMLINSKELLGFDSVVMAELQFHKTCTHKIIYSDNAF 66

Query: 84  FDLVRCM--------ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD------NR 129
                          A     +     +       PV+                    +R
Sbjct: 67  MQRTDDYVVPMEDYAADKVFPQILAGKEVIKVTNSPVYVHDVIFQHAGNAGSKPCENEDR 126

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF-----KSYDVHWGKDF 184
           Y     +       L++      +  ++   +   +A Y          +   V      
Sbjct: 127 YILAKMNHETQIASLIVF----VVNAKESEGKFEQIACYLHAHLLTNYVRILSVSNENII 182

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           +L+GRE   LTW+  GKTS E+A IL I+ NTVN +I +I  K     R  A+A A+  +
Sbjct: 183 KLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFHIKNIKNKLNATNRQHAVAIAIAKS 242

Query: 245 IV 246
           I+
Sbjct: 243 II 244


>gi|237708501|ref|ZP_04538982.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237723973|ref|ZP_04554454.1| transcriptional regulator [Bacteroides sp. D4]
 gi|229437637|gb|EEO47714.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229457430|gb|EEO63151.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
          Length = 206

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212
             + +I  L  Y     K            + EL+ RE+E L  I++G  + EIA  L I
Sbjct: 108 SLIKDIHQLRQYGHQARKQAVDKAMHIEKTEHELSIREIEVLILITKGLINKEIADKLHI 167

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 168 SLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 201


>gi|218700837|ref|YP_002408466.1| DNA-binding transcriptional activator EvgA [Escherichia coli IAI39]
 gi|218370823|emb|CAR18636.1| DNA-binding response regulator in two-component regulatory system
           with EvgS [Escherichia coli IAI39]
          Length = 204

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 73/238 (30%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +     + + +L  ++D+                +  LTE  G S    V   
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDI--------------EILAELTE--GGSAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                 +G L                K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSL-----------TSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIADKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|93009158|gb|ABE97933.1| GacA [Pseudomonas sp. BB3-2-32]
          Length = 180

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 17/196 (8%)

Query: 38  PLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKD 96
            +   ++    +  + +   G    +  R        +D  +      +  R +  S   
Sbjct: 1   GITRMLADIDGLQVVGQAESGEESLIKARELKPDVVLMDVKMPGIGGLEATRKLLRSH-- 58

Query: 97  KYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156
                ++      C      P            Y +    +  +   + L+F   R I  
Sbjct: 59  ---PDIKVVAVTVC---EEDPFPTRLLQAGAAGYLTKGAGLNEMVQAIRLVFAGQRYISP 112

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNT 216
               ++ + +    N              L+ RE++    I   +    I+  L +S  T
Sbjct: 113 QIAQQLAIKSFQPTN--------DSPFDALSEREIQIALMIVGCQKVQIISDKLCLSPKT 164

Query: 217 VNNYIASIMRKTATKT 232
           VN Y   I  K +  +
Sbjct: 165 VNTYRYRIFEKLSITS 180


>gi|167763338|ref|ZP_02435465.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
 gi|167698632|gb|EDS15211.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC
           43183]
          Length = 203

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   L     K R I       +        N   +      ++  
Sbjct: 81  MAFGVVLKDNSKEEILTALQCASRKERFICNHVSNLL-----LSGNNQSAAPHPTLQNAL 135

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA++  I
Sbjct: 136 LTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLNVNNAHEATKYAMKAGI 195

Query: 246 V 246
           V
Sbjct: 196 V 196


>gi|187929029|ref|YP_001899516.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187725919|gb|ACD27084.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 211

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 72/236 (30%), Gaps = 39/236 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R        S    +       G    +L     
Sbjct: 14  TVFVVDDDEAMRDSLTWLLEGNGYTVR-----TYRSAEEFLVDDKRGEGVGCLIL----- 63

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      +L   +          ++      F      +P  ++       
Sbjct: 64  ------DVRMQGMSGPELQDRLLAENNRM--PIV------FVTGHGDVPLAVSTMKKGAV 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +  +  K               A  + ++ +           LT 
Sbjct: 110 DFIEKPFDESELRELVERMLSK---------------ARSEDSVAREQKAAKDLLGRLTT 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  N
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSRN 210


>gi|17233235|ref|NP_490325.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135757|dbj|BAB78303.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 218

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 32/240 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +V+  ++E     ++    +   +  +            +  L               
Sbjct: 2   IRLVIIEDEELIRLGITTAINQQPDMQMVGIARTGHQGIKLVEELA-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++++ +          V+         V        +      
Sbjct: 48  -PDVVLVDIGLPDISGVEVIKQIKA-NTSNIKIVVLSSYYAQSIV-------QSALNVGA 98

Query: 128 NRYCSLTFDVARIRIGL-MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
           + Y     +V  I   +    +     +  D       ++ +     +       +D  L
Sbjct: 99  DSYILKKNNVPLILESIKTTFYDCKSFLDPD-------ISRHNFFFQQKIKGKTYQD-HL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +  E++ ++ ++ G ++  IA  L I+++TV  +I  I  K     R  A+  A +   +
Sbjct: 151 SNTEMQIISLMAAGFSNKHIAEQLFITQSTVKGHINKIFAKLDVADRVNALIVASKLGYI 210


>gi|187733890|ref|YP_001881178.1| DNA-binding transcriptional activator EvgA [Shigella boydii CDC
           3083-94]
 gi|187430882|gb|ACD10156.1| positive transcription regulator EvgA [Shigella boydii CDC 3083-94]
          Length = 204

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +     + + +L  ++D+                +  LTE  G S    V   
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDI--------------EILAELTE--GGSAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                       Y      S      K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFPF-----------YLNRFVGSLTSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|27366033|ref|NP_761561.1| putative response regulator [Vibrio vulnificus CMCP6]
 gi|27362233|gb|AAO11088.1| Putative response regulator [Vibrio vulnificus CMCP6]
          Length = 211

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 46/114 (40%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +      +  +   + ++        R+ +                     G  +EL+G
Sbjct: 98  GFLEAEKTLENLHRAIRMVASGQLWFSREAMSYALRNIVRTQATSSCSVDVVGSKYELSG 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +E +   ++ +G ++ EI+  L +S +TV ++++ I+ KT  ++RS      + 
Sbjct: 158 KEQKVFLYLLQGYSNKEISEQLNVSLSTVKSHVSHILCKTGKQSRSQLATLMIE 211


>gi|302549097|ref|ZP_07301439.1| LuxR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302466715|gb|EFL29808.1| LuxR family transcriptional regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 981

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 68/237 (28%), Gaps = 10/237 (4%)

Query: 19  RTSFVSHLPTRSDLLARMIPLD--CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
            T+      TR D+  R+  L        T  + +  +  GA  +  V  +L +  +  +
Sbjct: 738 VTTLTDEAGTRPDVTVRLATLALSAVADATAGLRSAGDEAGARRWTDVATELVELARATA 797

Query: 77  IV------SSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                           +                    ++     +               
Sbjct: 798 AHGANGTPQGPEGQAWLARAEAEWIRAVSGPDAAAWAQVVTAFGYGDVYERARCRLRYAE 857

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                            +      +    L E  + A  +            +   LT R
Sbjct: 858 ALVAAGRREEAVAEARAVRETADDLGALPLRE-QVDALVRRGRLADTPGSGDRAGVLTAR 916

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E L  ++ G+++  I   L IS  T + ++++I+ K    +R  A+A A R  ++
Sbjct: 917 EQEVLRLLALGRSNRRIGEELFISGKTASVHVSNILAKLGASSRGEAVAVAYREGLI 973


>gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1019

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 184  FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              LT RE+E L  ++ G TS +IA  L IS  TVN ++ SI  K    +RS A  YA+ +
Sbjct: 956  AGLTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRYALEH 1015

Query: 244  NIV 246
             ++
Sbjct: 1016 KLL 1018


>gi|298294134|ref|YP_003696073.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930645|gb|ADH91454.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 223

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D    +      +        L      + + L R +      +D  +  + 
Sbjct: 1   MTSVLVIDDHPIVLQGCRRLLEDAGVEKVLEASTLLTGYRLFRREKPDVVIVDLSLQGNG 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L+    L  +  +  +L         +               N Y       + +  
Sbjct: 61  LSGLMLVQRLRAQSAHTPILVFSMHGDPVI------ASRALEAGANGYVLKDTSSSVLME 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
               +      +  D   ++ LL   +A                T RE++ L+ ++EGK 
Sbjct: 115 AFERVRRGQPYMSHDLAMQVALLGTRKATPLADI----------TPRELQTLSLLAEGKD 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              IA  LG+S  TV N  +++  K    +    +  +++
Sbjct: 165 YTNIAAELGVSYKTVANTCSALKSKLGANSLPELVRRSIQ 204


>gi|116250399|ref|YP_766237.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255047|emb|CAK06121.1| putative GerE family transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 254

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 5/184 (2%)

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
             D     ++  IV       +       +                              
Sbjct: 61  SLDSALGAEVRLIVLGLAGRSVESTSLRDDLAAIAARCPEAPVTLLSGTDDAIIARQALK 120

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + S +  V     GL L+   G    +         + +     ++      +  
Sbjct: 121 MGIRGFFSTSLPVDIALAGLRLVLAGGTFFPQLLGAGTNGSSEHSPARSEAEKSLDDRTQ 180

Query: 185 EL-----TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            L     T RE + L  +  G ++  IA  L +S +TV  ++  IMRK   + R+  +A 
Sbjct: 181 YLAIADFTPREADVLAELQCGCSNKVIAGKLNLSGHTVKMHLQHIMRKLQAQNRTEVVAR 240

Query: 240 AVRN 243
            ++ 
Sbjct: 241 LIQR 244


>gi|313204159|ref|YP_004042816.1| transcriptional regulator, luxr family [Paludibacter
           propionicigenes WB4]
 gi|312443475|gb|ADQ79831.1| transcriptional regulator, LuxR family [Paludibacter
           propionicigenes WB4]
          Length = 232

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 11/121 (9%)

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG--KDF 184
            +     TFD    R  L++       +  D                K         +  
Sbjct: 120 GHGVTIKTFDDGSSRQLLVVAMDITDTMHTD---------NQLVAALKEIKQLKSCLRLT 170

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
             T RE E LT I +GKT   I+  L IS  T   +  +I+ K   K  +  +A      
Sbjct: 171 TFTKREKEILTLIVKGKTDKFISEKLFISIKTAKKHRTNIIHKAGVKNTAELVALLTECG 230

Query: 245 I 245
           +
Sbjct: 231 L 231


>gi|293606335|ref|ZP_06688695.1| LuxR family DNA-binding response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292815195|gb|EFF74316.1| LuxR family DNA-binding response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 231

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 62/240 (25%), Gaps = 30/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++++++  +     + V H       ++ +     +                  F L+  
Sbjct: 2   KISLIIADDHPALITGVKHELVEFHTISIVGTASNSTEI---------------FELLAK 46

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                   D ++      D +  ++   +            +                  
Sbjct: 47  SPCDVLVTDYVMPGGEFGDGLTMLSFLRRRYPD-----LKIIVFTTIDNRAMVAEMVKVG 101

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +   S    +  +   +  ++                 +A                 +L
Sbjct: 102 AHAVLSKVDVIGHLISAIHAVYAGATYFSP------KFRSASAVGQLAQISPAQ----KL 151

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           T RE E +     G + +EIA     S+ T+++   S MRK   +        A    ++
Sbjct: 152 TRRETEVVRLYVSGVSINEIASQFNRSKQTISSQKTSAMRKLGIERDVELFRCAYEIGLL 211


>gi|260221993|emb|CBA31112.1| hypothetical protein Csp_C26920 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 233

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 15/194 (7%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP---FDLVRCMALSEKDKYYNVLQRP 105
           + +  E    +    +         LD  V    P    +    +   +        +  
Sbjct: 47  IKSAVELESFAALKQLARRNGDVIWLDLKVGDVPPWASTEWNDLLHDKQM-------RIV 99

Query: 106 TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165
                P      E I         YC    D   +     +       I +  + ++   
Sbjct: 100 AASSYP---RDEEAIAALDLGCAGYCHAFSDPETLLQVHQVTMAGHVWIGQHLMQQLIQT 156

Query: 166 AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
           A       +S    W    ELT RE E     + G ++  IA    I+  TV  +++++ 
Sbjct: 157 ANRAKPSRRSTPGAWDD--ELTAREREVAKMAAHGASNLAIAEQCDITERTVKAHLSAVF 214

Query: 226 RKTATKTRSGAIAY 239
            K     R      
Sbjct: 215 EKLGVTDRLQLALK 228


>gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1]
          Length = 82

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S          LT RE + L W + GK+S EI  IL    +TVN ++++I+RK    TR 
Sbjct: 8   SQQPPADAPVRLTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDVPTRV 67

Query: 235 GAIAYAVRNNIV 246
            A+  A+R  ++
Sbjct: 68  VAVIKAIRYGLL 79


>gi|302551990|ref|ZP_07304332.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469608|gb|EFL32701.1| two-component system response regulator [Streptomyces
           viridochromogenes DSM 40736]
          Length = 284

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 58/226 (25%), Gaps = 3/226 (1%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       ++        +          +      A+ E       L+   
Sbjct: 32  RIRVLVVDDHRIFAESLAAALAAEPDVDVSAAGSGPAALRSLERAVAEGRRFDVLLVDAD 91

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +       V      +      +S      +       +                  
Sbjct: 92  LGGKVPGARPAVPVQEGNEDGLVDGISLVTGVRSAQPNVRIVVLAEKDDPRRAALALQAG 151

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + + +    ++R+   +  +      +    L  +              +        L
Sbjct: 152 ASGWVAKDCSLSRLLTVIRGVLRDETHLPPALLTGVLRELTAARKHRTESERLVES---L 208

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           T RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 209 TPREREVLRCMVAGLGRKAVAERLYLSPHTVRTHMQNVLGKLGVHS 254


>gi|300933196|ref|ZP_07148452.1| putative transcription regulator [Corynebacterium resistens DSM
           45100]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 62/221 (28%), Gaps = 17/221 (7%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   PT  D           +  +          G      +  +       D  +
Sbjct: 4   RILLVDDDPTILDAFPVYFSTTDDLEISGTART-----GRQALTWLDTNTCDLVLSDVQM 58

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +L++ +            + P  +    F T    +   +     Y        
Sbjct: 59  PDIDGIELLQHIRDLN--------RPPLFVAMTAFDTDDTMLKCLSLGAVGYIIKGRAPE 110

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            I   L      G ++  D L  +              +    +  E+  RE   L+ I 
Sbjct: 111 SIIHSLRDATHGGTVLSADCLSRLLDSKTAVNRE----NGSAFRAPEINNREQVVLSLIC 166

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EGKT+ EI   L ++  TV   I+S+  + + + R      
Sbjct: 167 EGKTNREIGEALHLAEITVRKIISSLFWRFSARNRVDLAVR 207


>gi|227875532|ref|ZP_03993672.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
 gi|227843868|gb|EEJ54037.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
          Length = 234

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   +D      ++ L  R   +  +            +  +               
Sbjct: 8   IRVIFADDDAVYLRGMTDLLNRLKNIEIVGQASDGDEAMRLIETIDH------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + S    ++ +       D+          L    F          A   
Sbjct: 55  --DVVLLDVTMPSMGGIEVTKSALELNPDE--------KILMLTAFERPDMLRQSLAAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FE 185
             + +   D   I   +  +F  G+I+       + L+  Y  +          K     
Sbjct: 105 RGFLTKETDFREIGAAIQRVFRGGKILDE---KPLSLVMDYFVSANPENGDQELKAKIEA 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L       +  I E +++ EIA   G+S +TV  YI  I++K   + R       +R  +
Sbjct: 162 LPEHLRIIVNLIGEARSNKEIAKATGLSLHTVTTYIKRILKKLNIR-RGQLTLEMIRLGM 220


>gi|254438346|ref|ZP_05051840.1| HTH DNA binding domain family [Octadecabacter antarcticus 307]
 gi|198253792|gb|EDY78106.1| HTH DNA binding domain family [Octadecabacter antarcticus 307]
          Length = 202

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 16/176 (9%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRYC 131
           +  P   V          +  V++        +  +  +   P          G+     
Sbjct: 34  NALPAPWVDHYTTHRFMLHDPVIRWIYANTGAITWSAIDLPDPMRVLHQAQTFGLRYGVA 93

Query: 132 SLTFDVAR-IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
              FD  R  +          R   +  +  +      + +              LT  E
Sbjct: 94  VACFDGNREGQRSFGTFARSDREFEQAEIDALHAYVLKRHHAKA-------PPTNLTNAE 146

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  + EG    +IA +LGIS   V   + +   K   +T + A A      ++
Sbjct: 147 LEALRMVREGLRLKQIAHLLGISEGAVKQRLKNAKNKLGAQTSAQAAAMVGEFGLI 202


>gi|288803367|ref|ZP_06408800.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
 gi|288334187|gb|EFC72629.1| transcriptional regulator, LuxR family domain protein [Prevotella
           melaninogenica D18]
          Length = 313

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            +  L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G   YA+
Sbjct: 242 SNEVLSDREKDVIVAVAQGMTNKEIADHLCISTNTVITHRRNIARKLQIHSPAGLTIYAI 301

Query: 242 RNNIV 246
            NN+V
Sbjct: 302 VNNLV 306


>gi|61658221|gb|AAX49387.1| BvgA [Aeromonas hydrophila]
          Length = 207

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 71/238 (29%), Gaps = 33/238 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       V+ L  +      +  +D                G       R   
Sbjct: 3   RILIVDDHPAIRMAVNMLLKQDGHHI-LAEVDN---------------GVDAIASARKHQ 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      ++++ +   +      V+    +    V     +         +
Sbjct: 47  PDIVVLDIGIPRLDGIEVIKRLKDMDASIK--VIILSAQSTHHVMVRCLQ------AGAD 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   +++ +R  ++ +        RD +                          L+ 
Sbjct: 99  GFMSKLDELSLLRCAIVKIEKNQLYFPRDII---------AGAKNAHSVDREDLFSALSD 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE+  L  I +G+ + +IA  + +S  TV+ Y   +M+K         I  A R  ++
Sbjct: 150 REMSVLLQICQGQINKQIAESMLLSEKTVSTYKTRLMQKLNVTNMVDLINLAKRQKLI 207


>gi|254524261|ref|ZP_05136316.1| DNA-binding response regulator, LuxR family [Stenotrophomonas sp.
           SKA14]
 gi|219721852|gb|EED40377.1| DNA-binding response regulator, LuxR family [Stenotrophomonas sp.
           SKA14]
          Length = 223

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 59/225 (26%), Gaps = 18/225 (8%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSS 80
            ++ +    D    ++     +    R   + E     S   ++  +       D  +  
Sbjct: 1   MLTRIAIADDHPLVLLGTRIVIEAGGRHRVVAEARCAESLLAVLAEEPVDLVVTDFSMPD 60

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               D    +    ++       +   +   +                        V  I
Sbjct: 61  GGRSDGQAMLQALRRNH-----PKVPVILATMVTNATTLNMAMRTGVRGLVCKGSGVDGI 115

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
           R  +  +   G  +  +    +                       L+ +E+E L     G
Sbjct: 116 RRAVDTVLSGGIYLDPELAHCLQ------------DAGRERSLSVLSPKELEVLRLYVSG 163

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +  EIA  L  + +T++    S MRK      +   AYA    +
Sbjct: 164 PSITEIAAQLRRTVSTISRQRISAMRKLGISNDAELFAYAFEERL 208


>gi|83645434|ref|YP_433869.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
 gi|83633477|gb|ABC29444.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC
           2396]
          Length = 894

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
              A    +     G   EL+ RE+E LT I EG  + +IA  L ++  TV  +I +I  
Sbjct: 815 PAPAQEEATLSQPGGLLEELSKREMEVLTLIYEGLPNKKIADRLFLAPATVKAHIRNIYG 874

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K    +R+ A+A A    ++
Sbjct: 875 KIGAASRTEALARARHLGLL 894


>gi|317970291|ref|ZP_07971681.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 228

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 57/189 (30%), Gaps = 21/189 (11%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLP 117
           AS    +  + ++       + S   FDL R     +      V+        PV H   
Sbjct: 59  ASCLNYLSQEPYELLICTDFLESGSGFDLARKAKALQPQLK--VVMLALGDAIPVEHAEA 116

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +       +       D   +   ++ +                          +S  
Sbjct: 117 SWLEAVVAEAD----FIEDQKPLEAAVLAVMGHHAYRSPS---------------LRSGQ 157

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           + +     LT RE E L  ++ G T  EIA  L +S  T   Y   +++      R  A+
Sbjct: 158 LPYLSCPRLTPREYEVLDLLASGLTDREIAEQLVVSEETARTYTKRLLKTLEVNNRVQAV 217

Query: 238 AYAVRNNIV 246
              +R  +V
Sbjct: 218 LKGMRCGMV 226


>gi|291614672|ref|YP_003524829.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291584784|gb|ADE12442.1| two component transcriptional regulator, LuxR family [Sideroxydans
           lithotrophicus ES-1]
          Length = 222

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 55/235 (23%), Gaps = 30/235 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  +++  +       +  L  R   L                 A               
Sbjct: 10  KAKVMVVDDHAIIRQGMFMLINREPDLHACCEAANIEQAVEVNRACKH------------ 57

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  +D  + +    +LVR            +L                        
Sbjct: 58  ---DIAIVDISLDNASGLELVRRFQF--LFPDLPILILSM------HDESIYAEAALKAG 106

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              Y         +   +  +      +          + +                  L
Sbjct: 107 ARGYLMKQMATDVLLHAMRKILQGDLYLSD-------QMHSRMLKKMMGNQKSDSPVANL 159

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +  E+E L  +  G  + EIA  L  S  T+ ++ A+I +K    + +    +A+
Sbjct: 160 SPTELEVLHLVGLGMGTSEIAAKLVRSIKTIESHKANIKKKLNLDSGNQLTLFAI 214


>gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii
           DSM 18315]
          Length = 192

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           EL+ RE + L  I +G T+ EIA  L IS NTV ++  +I  K   KT SG   YA+ N 
Sbjct: 124 ELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKLGIKTVSGLTFYAIMNG 183

Query: 245 IV 246
           I+
Sbjct: 184 II 185


>gi|254229254|ref|ZP_04922672.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262393135|ref|YP_003284989.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
 gi|151938178|gb|EDN57018.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25]
 gi|262336729|gb|ACY50524.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25]
          Length = 214

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+
Sbjct: 148 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207

Query: 240 AVRN 243
           A +N
Sbjct: 208 ADQN 211


>gi|119511948|ref|ZP_01631045.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463368|gb|EAW44308.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 69

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            ELT RE E L  I+ G  + EI+  L IS  TV N++ +I+ +   + R+ A   A
Sbjct: 2   TELTPREKEVLRLIAVGANNREISQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 58


>gi|254283973|ref|ZP_04958941.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
 gi|219680176|gb|EED36525.1| transcriptional regulator, LuxR family [gamma proteobacterium
           NOR51-B]
          Length = 206

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 11/200 (5%)

Query: 38  PLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDK 97
             +    W +    L        ++           LD    S    +     A+    +
Sbjct: 9   HAEPLSRWRVAFADLQMRHDVDDYMANTRHSDDLCWLDVSSFSSAEAEA----AVKRLTR 64

Query: 98  YYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRD 157
               +   +           E +   +     YC       ++     ++   G  +   
Sbjct: 65  EDARVVALSAAPQ-----EAEAVRLISAGARGYCHADAVPEQLLEVKQVVAAGGYWMQPG 119

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            +  +  +AA       +          LT RE E    + +G  + EIA +LG+S  TV
Sbjct: 120 LVQRMVAIAARV--DPDTPQPEVEGFDALTHREYEVAALVGKGANNKEIAELLGVSERTV 177

Query: 218 NNYIASIMRKTATKTRSGAI 237
             ++ +I  K   + R    
Sbjct: 178 KAHLTAIFEKLELRDRVQLA 197


>gi|16760019|ref|NP_455636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142210|ref|NP_805552.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213162401|ref|ZP_03348111.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427737|ref|ZP_03360487.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581810|ref|ZP_03363636.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213618652|ref|ZP_03372478.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213646854|ref|ZP_03376907.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864885|ref|ZP_03387004.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828614|ref|ZP_06546439.1| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080868|ref|ZP_06537029.2| DNA-binding transcriptional regulator CsgD [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25298760|pir||AG0635 probable regulatory protein STY1179 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502313|emb|CAD08266.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137840|gb|AAO69401.1| putative regulatory protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 208

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N     T D   +  GL  +        +        LA+Y      +Y  +  +   LT
Sbjct: 105 NGVFYATEDQEHVVSGLQGILRGECYFSQK-------LASYLITHSGNYRYNSTESALLT 157

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            RE E L  +  G +++EIA  L IS NTV  ++ ++ +K A K R+ A+
Sbjct: 158 HREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAV 207


>gi|320322570|gb|EFW78663.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330177|gb|EFW86163.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330875366|gb|EGH09515.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330987495|gb|EGH85598.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 24/222 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R       P   + + R I      +       L E +  +     R D      LD 
Sbjct: 2   PCRIIVADDHPLFREGMLRTIERLIPEAIIEEAGNLDEVLTLAR----RGDEVDTLVLDL 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
                     +  +            +R + +   +   L       +   + +     D
Sbjct: 58  RFPGLTSMQTIGSLRSE--------FKRTSIIVVSMVDDLDTISQVMSQGADGFIGKNID 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   ++ +     ++             Y+       D+  G    LT R+ E L  
Sbjct: 110 PLEIAESIIAIRDGEVVV------------KYKPEGSLLSDLDSGAISHLTARQREVLGL 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A A
Sbjct: 158 VASGKTNKEIARDLGISPFTVRIHVSSLLKALGVSTRSAAAA 199


>gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
 gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium
           OB3b]
          Length = 254

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 28/242 (11%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD--SIVSSDWPFDLVR 88
           +L+  +  +D +  +   M    + +    + +          ++   +V+  +P +L  
Sbjct: 15  ELIDVLAEVDTSDKFVACMKGEMQRIVPHEWFICSVGRIGRNGIEPIHVVTHKFPDELFA 74

Query: 89  CMALSEKDKYY-NVLQRPTELFCPVF---------HTLPENITPPAGMDNRYCSLTFDVA 138
            ++ S+       VL R  E   P+                                   
Sbjct: 75  LISGSDPKVLDNPVLSRWWETRAPIAINFEDCSGSWPQVMAERAIKFDARNLLG--HGQV 132

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW--------------GKDF 184
            I    +  F   RI  R    +  LLA    N++ ++                  G+  
Sbjct: 133 DIGGAFVTYFSFHRIPQRLDRKQTLLLARIVPNLYAAFARAHPSFESAATVKRLNDGRGA 192

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           ELT R++E L W+ +GKT+ EI+VILG+S + V  ++  I RK     R+ A+A A   +
Sbjct: 193 ELTPRQIEILEWLRQGKTNWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEAASRS 252

Query: 245 IV 246
           ++
Sbjct: 253 VI 254


>gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 220

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 61/236 (25%), Gaps = 33/236 (13%)

Query: 7   QVNIVLNREDE----QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
           ++ I +   D+         + HL   +D+               +              
Sbjct: 6   RIRIAIVDNDKLAIGMMRLLIGHLLPSADI---CWTAFTGEEAVSK-------------S 49

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           L          +D  +     F++ R +            +                   
Sbjct: 50  LFDKTQPDVLIVDMSLEGMSGFEVCRRIRSRTP-------KIALIGVTAFSPERYYADA- 101

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            +   N            R    L   +         +E    A    +     D     
Sbjct: 102 LSNGANCLIPKVQMRDICRASYRLANGQQ----PGTQYESSETAQEAYSKLSPEDAGQY- 156

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              LT RE E ++  + G TS EI   LGI  +TV  YI  +  K   K R+ A+ 
Sbjct: 157 HKNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAVI 212


>gi|27762474|gb|AAO23018.1| putative regulatory protein MdlX [Pseudomonas putida]
          Length = 233

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 71/226 (31%), Gaps = 23/226 (10%)

Query: 31  DLLARMIPLDCTVS-----WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           D LA ++ L              + A+  ++ A       WD  + + +D +  +     
Sbjct: 11  DQLAELVWLLAQFQGKPNARAAILQAVAAFLDAEFVASFVWDKSEGRSIDPLAFNME-SQ 69

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP------------PAGMDNRYCSL 133
            +         +   V     E+  P         +             PA M++     
Sbjct: 70  FIEAYQK-HFYQVDLVTPIMREVRAPARVDCHVPRSAMLKSEFYNDFLQPADMEHGLNVF 128

Query: 134 TFDVARIRIGLMLLFPKGR-IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            FD  R    L +   KG           +  L  Y    F        +   L+ RE E
Sbjct: 129 FFDGDRDIGDLRVWRSKGSKPFSEREERLLSTLQPYVQKAFSPAPTLSQR---LSLREAE 185

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
               +++G +  E+A  L I+ +TV  ++ + M K   + R+    
Sbjct: 186 VAELVAQGASDKEVARRLDIAFSTVRTHLKNAMAKLECQNRTQLAR 231


>gi|70730999|ref|YP_260740.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345298|gb|AAY92904.1| DNA-binding response regulator, LuxR family [Pseudomonas
           fluorescens Pf-5]
          Length = 217

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 26/240 (10%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++++ + L  +     + VS L  ++     +  +    +   ++               
Sbjct: 1   MKKIRVALADDHPLVLAAVSDLLKKTRQYEVVAAVTTPSALVQQL--------------S 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +  D  F     +             R   L   +            
Sbjct: 47  DDPRIDVVITDYFMEGDPTFGDGIRLVTYLIRH----FPRVQVLVLTMMSNPMIVAALYD 102

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                      D++ +   L  +           +                         
Sbjct: 103 IGVRSVLPKRHDMSELLSALENVRQGRIHHPPSLVQNEL--------NSSPLRSMADGLS 154

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT +E E L     G++  +IA  L  S  TV+    S +RK    +    +A+ + + 
Sbjct: 155 SLTPKEYEVLRHFVRGESMMQIAANLKRSVKTVSAQKISAIRKLNLDSDQALVAFCLESG 214


>gi|254239749|ref|ZP_04933071.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192]
 gi|126193127|gb|EAZ57190.1| hypothetical protein PA2G_00374 [Pseudomonas aeruginosa 2192]
          Length = 210

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 66/231 (28%), Gaps = 35/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R    AR+                              + 
Sbjct: 4   RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLAGE--------------GEQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD         +++  +             R T +   +               +
Sbjct: 50  PDSLILDLRFPGLTRIEMLADLRRR--------FPRTTLIVVSMVDDPQLIGEVMNAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   ++ +     ++  +    + L                 +   LT 
Sbjct: 102 GFLGKSIAPEELGRAILAIRAGEVLVRYEPSGLLPL-------------QPSPRLEGLTE 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 149 RQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
 gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium
           opportunistum WSM2075]
          Length = 222

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 29/213 (13%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           P     L  M+  D        + +     G     L     F    +   ++     D+
Sbjct: 26  PLVISALREMLECDGRFELLASVQS-----GKHFLELATAHEFDVAVIGWKLADMDGADV 80

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
           +  +  S+       ++            L + +         YC    D   I   ++ 
Sbjct: 81  LAEIQASKVP-----VRIAVFSNDHDIGILKQCVRL---GAQGYCFQFDDPHIIFETILA 132

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
           +      I    + ++                +     +LT RE E L  +S+G T+ +I
Sbjct: 133 VAHGRICIPYIDINKV----------------NDTPLAQLTVRERELLAVLSDGWTNLQI 176

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           A   GIS NTV  ++ ++  K   + R+ A+A 
Sbjct: 177 ATRTGISENTVKYHLKNLYDKLDVRNRAMAVAL 209


>gi|229818797|ref|YP_002880323.1| two component LuxR family transcriptional regulator [Beutenbergia
           cavernae DSM 12333]
 gi|229564710|gb|ACQ78561.1| two component transcriptional regulator, LuxR family [Beutenbergia
           cavernae DSM 12333]
          Length = 198

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 11/187 (5%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           GA+   ++         +D  +         R +           +   T      F T 
Sbjct: 17  GAALPAVLDAHPLDVVLMDLRMPRVDGIAATREVRRRR---DAPAVVVLTT-----FDTR 68

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            E           Y       ARI   +        ++       +   AA       + 
Sbjct: 69  EEVEGALHAGAVGYLLKDAPPARIAEAVRAAALGEPVLSPQVARRLMTSAADAGAARSTA 128

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G+   LT R  E    I  G ++ ++   L +S  TV  Y++S++ K   + R+  
Sbjct: 129 RAALGR---LTARGREVALEIGRGASNADVGARLHLSVPTVKAYVSSVLAKLGVENRTQV 185

Query: 237 IAYAVRN 243
                  
Sbjct: 186 ALLVHEA 192


>gi|332668102|ref|YP_004450890.1| LuxR family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336916|gb|AEE54017.1| two component transcriptional regulator, LuxR family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 204

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 60/213 (28%), Gaps = 21/213 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLV-----RWDLFQEQKLDSIVSSDWPFDLVRCM 90
           ++ ++        +      V  +   +           ++Q  D ++        +  +
Sbjct: 6   ILVVEDEPLIAEDISEYLSNVDYTVAAIAFNKVQALLALEKQIPDLVLLDINLGGNLDGL 65

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
            L++             +F   +                Y    F              +
Sbjct: 66  DLAQLINQK---YHTPFIFLTSYAHKSILDQAKLTRPMGYILKPFT-------------E 109

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
             +     +         Q   F    ++      LT +E + L  I +G T+ ++A   
Sbjct: 110 RDLYSSIEIALYNFAQNAQPRNFNLEKLNQQLLSPLTEKEFQVLQDIYQGCTNKQMAEQH 169

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +S NT+  ++ ++  K    +RS AI      
Sbjct: 170 FVSVNTIKTHLQNLYDKLNVCSRSEAIVKLREM 202


>gi|261254003|ref|ZP_05946576.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
 gi|260937394|gb|EEX93383.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP
           102891]
          Length = 215

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +  G ++ +IA  + IS  TV +++  I +K + K R  A A+A ++
Sbjct: 153 VDLTTREIQILRCLMVGSSNIQIAEDMFISEFTVKSHLQKIFKKLSVKNRVQAAAWAKQH 212


>gi|256258754|ref|ZP_05464290.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|297247587|ref|ZP_06931305.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5
           str. B3196]
 gi|297174756|gb|EFH34103.1| monoamine regulon transcriptional regulator [Brucella abortus bv. 5
           str. B3196]
          Length = 245

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 80  AVMIHIGSKRLADPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 140 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G ++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 188 VHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|332526482|ref|ZP_08402595.1| two-component response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332110751|gb|EGJ10928.1| two-component response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 248

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 71/242 (29%), Gaps = 34/242 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGAS-------HFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           ++ +D        + A+   +G              R  L Q+   D ++      +   
Sbjct: 3   VLLVDDHPLILSALQAVIRGLGDDVDVHGAATAEAAREALRQDADRDLVLLDLALGEDDG 62

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
              L+E    Y  L               + I         +         +   L ++ 
Sbjct: 63  FEVLAEFRAAYPELPVVVIS---ASDRASDVIRAIDLGAMGFVPKRSSNKALCEALRMVM 119

Query: 149 PKGRIILRDRLW---------------EIGLLAAYQANMFKSYDVHWGKD----FELTGR 189
             G  +  + L                 + L+           + H          LT R
Sbjct: 120 SGGLYVPPNMLGLEPRPVSDAPETVPGALRLVPDAPLGERARPEPHQEPPSLARIGLTPR 179

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA-----VRNN 244
           + E L  + +G  +  IA  L +S  TV +++A+++R     TR+ A+         +N 
Sbjct: 180 QGEVLGLLLKGLPNKLIARELDLSVETVKDHVAAVLRALGVSTRTQAVLAVSQMMQRQNG 239

Query: 245 IV 246
            V
Sbjct: 240 WV 241


>gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
 gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701]
          Length = 89

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 38/59 (64%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE+E +  ++ G T+ EIA+ L IS+ TV+N++++I  KT  K R   + +A+ N 
Sbjct: 14  LSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKTGAKNRVALLNWAMDNG 72


>gi|37528119|ref|NP_931464.1| hypothetical protein plu4288 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787556|emb|CAE16660.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 251

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           + LT RE E +  I +GK S +IA  L IS  TV N+  +I +K   ++++  
Sbjct: 186 YALTPRECEIVELILQGKGSPQIAEKLFISTGTVKNHRKNIYQKLQIRSQAEL 238


>gi|303239522|ref|ZP_07326048.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
 gi|302592900|gb|EFL62622.1| two component transcriptional regulator, LuxR family [Acetivibrio
           cellulolyticus CD2]
          Length = 218

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 23/238 (9%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  ++E     +  +  +   +  +      +    +  AL+              
Sbjct: 2   TKVIIVDDEEIFREGIKFILEQDKDIEVVGEAQNGIEGIKKCEALS-------------- 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D ++      +  R +            +    +    F+         +   
Sbjct: 48  -PDLILMDIVMPECDGIEATRIIKSK--------FENIKIIMLTTFNDEDNIAQAISNGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y         + + +        +I       +                       LT
Sbjct: 99  DSYILKDVAAPDLLMAIRSCTKGFNVIQNKAFSNMPKCFGRCPQKISIIKKDTLNTANLT 158

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++ E +  I EGK + EIA  L +S  TV N I+ +++K   K R     YAV+N I
Sbjct: 159 HKQKELIRLIVEGKENKEIASELYLSEGTVRNSISKLLKKLNLKDRIQLAVYAVKNGI 216


>gi|160885020|ref|ZP_02066023.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
 gi|156109370|gb|EDO11115.1| hypothetical protein BACOVA_03017 [Bacteroides ovatus ATCC 8483]
          Length = 200

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 34/80 (42%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y                 L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 116 GYPVKDMSPMPPMQPHQEILSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 175

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 176 KLGIKSVSGLTIYAVMNGYI 195


>gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum
           STM815]
          Length = 361

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT RE E +  I+ G+ + +IA  LG+S  TV N+I +I  K 
Sbjct: 280 VRAFLPPARHIDPVFSALTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKL 339

Query: 229 ATKTRSGAIAYAVRNN 244
             ++R+ AI  A +  
Sbjct: 340 EVESRAQAIVLARKAG 355


>gi|15802912|ref|NP_288939.1| DNA-binding transcriptional activator EvgA [Escherichia coli
           O157:H7 EDL933]
 gi|25298728|pir||B85879 hypothetical protein evgA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12516739|gb|AAG57494.1|AE005468_3 putative positive transcription regulator (sensor EvgS)
           [Escherichia coli O157:H7 str. EDL933]
          Length = 204

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 25/224 (11%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P     +  ++  +        +  LTE  G S    V         +D  +   
Sbjct: 5   IIDDHPLAIAAIRNLLIKND----IEILAELTE--GGSAVQRVETLKPDIVIIDVDIPGV 58

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
               ++  +   +             +     +             N + S    +  I 
Sbjct: 59  NGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNII 110

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +                 +G L                K   L+ +E+  + +I +GK
Sbjct: 111 AAIEAAKNGYCYFPFSLNRFVGSL-----------TSDQQKLDSLSKQEISVMRYILDGK 159

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 160 DNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 386

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 78/238 (32%), Gaps = 10/238 (4%)

Query: 12  LNREDEQRTSFVSHLPTRSDLLARMIPLD--CTVSWTMRM--YALTEYVGASHFLLVRWD 67
           L+  D    + V  L T   L A ++        +    +    L    G    +     
Sbjct: 137 LHALDPASLNLVGELATADGLPALLMVATRPAAHAVAPALTGRTLARLCGVRGVVRQHLG 196

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +  ++  +++  +         +    ++                     IT  A   
Sbjct: 197 PLRPAEVAEVLNQVYAGSAADTRLVHRVWQHTAGNPYALTELLAAHADRDTLITLAALSA 256

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
                     A     L        +     +  +G + A   +             ELT
Sbjct: 257 ------AVSAAAGPEALGSAAVGPAVPGSTAVVPVGAVPADGVSATAVPGPRVAAVAELT 310

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GREVE L  +  G ++ ++A  LGIS  TV  ++++++RKT   +R+ A  +AVR  +
Sbjct: 311 GREVEVLDCLVAGMSNKQVARALGISVRTVTVHVSNLLRKTGAASRTEAALWAVRQRL 368


>gi|320458039|dbj|BAJ68660.1| putative two-component response regulator [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 223

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 63/235 (26%), Gaps = 17/235 (7%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  + +      S +  +   L   +           + AL          L    L  
Sbjct: 1   MIVDDQQPTRMGFSLMVMKDPALRMTLQAGNGQDALDILAAL---------QLHGQSLPD 51

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
              +D  +      D    +        Y  ++         +          +   + +
Sbjct: 52  VILMDVRMPVMDGLDATARIKQL-----YPSIRIL---ILTTYDQDSYAFGGLSAGASGF 103

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +  ++    I+      E+        ++         K   L  RE
Sbjct: 104 LLKDVKTKDLCRAIHSVYDGDAILTPRITKEVIRRGVPNVSINADTLAIRSKFDSLGPRE 163

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            E    +SEG T+ EIA  LG+    V   ++  + K   K R G      +  +
Sbjct: 164 FEVSALVSEGMTNAEIAQRLGMQLEAVKKAVSRSLAKLDVKERVGIAVLWYKAGM 218


>gi|319943906|ref|ZP_08018187.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gi|319743139|gb|EFV95545.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 225

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 40/230 (17%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +DE     +  L   S    R               +        HF ++     
Sbjct: 29  VYIVDDDEAVRDSLRWLLEGSGFNVR---------TFHSAESFLNAYTPGHFAVL----- 74

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +      +L   +     D           +F      +   +         
Sbjct: 75  ---ILDVRMGGMSGIELHDELLRQRYD--------LPLIFMTGHGDVGMAVARMKLGAVD 123

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    FD  ++   +   F + R+   D                   +        LT R
Sbjct: 124 FLEKPFDDKQLISTVENAFNQARVKQNDAQRR---------------EQRQELLARLTPR 168

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           E + L  I+ G+ + +IA  L IS  TV  + A+IM K   +T +  +  
Sbjct: 169 EQQVLELIAAGRLNKQIAGDLNISIKTVEAHRANIMDKFEVRTMADLMRR 218


>gi|237722378|ref|ZP_04552859.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|260171068|ref|ZP_05757480.1| transcriptional regulator [Bacteroides sp. D2]
 gi|299146395|ref|ZP_07039463.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|315919388|ref|ZP_07915628.1| transcriptional regulator [Bacteroides sp. D2]
 gi|229448188|gb|EEO53979.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|298516886|gb|EFI40767.1| transcriptional regulator [Bacteroides sp. 3_1_23]
 gi|313693263|gb|EFS30098.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 219

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +            D  
Sbjct: 98  MAFGVVMKDNSKEEIMTAIQCATRKQRYICNHVSNLL------LSGTSSPLAASSMDDHL 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|94970756|ref|YP_592804.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552806|gb|ABF42730.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 209

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 65/236 (27%), Gaps = 40/236 (16%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D Q  + +  L   + L                     +  G            
Sbjct: 9   VFVVDDDPQVRASIQGLLKSAGL---------NSQCFESAEQFLQTKGPD--------GP 51

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      D  + +  +       ++      F      +P  +         
Sbjct: 52  SCLVVDVSLPGISGLDFQQQLKEAGLSI--PIV------FITAHGDIPMTVRAMKSGALE 103

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +  F+   +   +          L     E  L A Y+                LT R
Sbjct: 104 FLTKPFEPEHLLSVVEQALACDVARLAVEAEEAALRARYEM---------------LTRR 148

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E +  +  G  + +IA  LG S  T+  +   +M K    + +  +  A R ++
Sbjct: 149 EREVMGLVVSGFLNKQIASELGTSEITIKVHRGRVMLKMQAGSLAELVRMAERLHL 204


>gi|284009118|emb|CBA76121.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 205

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 23/195 (11%)

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------------T 121
           +D I+ ++   +               V+    E            I            +
Sbjct: 8   MDVIIINNH-TEWFELYIKGSYQLIDPVIINAMERVDDFHWDEKIMIYSEMKLPKIFKHS 66

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGR----IILRDRLWEIGLLAAYQANMFK--- 174
               ++  +  +  D       L +            +     +   L            
Sbjct: 67  KKYNINKGHTFVLHDYLTNLAVLSIFETGSDDNNKYTINSNKEKFQQLLIKTHQKLLSLY 126

Query: 175 ---SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                  +  K   L+ RE E L W+S G+T  +IA +LGI + T+  ++ ++++K    
Sbjct: 127 DEIEKGRNQYKPSGLSSRENEILYWVSIGRTYQDIAKMLGIKQGTIKFHMGNVVKKLGVS 186

Query: 232 TRSGAIAYAVRNNIV 246
           +   AI  A    ++
Sbjct: 187 STKHAIKLATELKMI 201


>gi|148260734|ref|YP_001234861.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
 gi|146402415|gb|ABQ30942.1| response regulator receiver protein [Acidiphilium cryptum JF-5]
          Length = 267

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 18/215 (8%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQE-----QKLDSIVSS---DWPFDL 86
           R+  +D +      + +     GA   +              +  D ++     D P   
Sbjct: 49  RIGLVDSSRLTRECLASALVAQGADFAVRSFVTAEDCIDAAGEGFDLLLCHAHEDGPAAK 108

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC-SLTFDVARIRIGLM 145
                ++   + +  L                           +  +    +      + 
Sbjct: 109 AVLADIAALREAFPGLPIVVLHDAAETPDTGFVRLLFQEGAQGFVPTRMVGIPLAVAAIR 168

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +   GR    D L +         +           D  LT R+      + +GK +  
Sbjct: 169 FVQAGGRFAPVDLLLD---------DRPPPPSGFAPGDDFLTPRQKLVFAHLRQGKANKI 219

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           IA  LG+S +TV  +I +IMRK     R+ A+  A
Sbjct: 220 IAYELGVSESTVKVHIKNIMRKIGATNRTQAVYKA 254


>gi|146277025|ref|YP_001167184.1| two component LuxR family transcriptional regulator [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555266|gb|ABP69879.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 247

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 9/204 (4%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
            R +  +C V      +   + +G         +       + I+ S     +       
Sbjct: 38  PRTLERECLVRCVELAHPEIKVMGFGSID-EWQNRRDRHGHEVILYSTGNRPVTEVSREI 96

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
                   +     +     + L E I         Y   +  +  I     L    G  
Sbjct: 97  ATLVAEAGVAPVVVI--GAANDLREMIAAFDCGARSYLPSSVGIDDIVEASRLASFDGIF 154

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +    L  +         +    + H   +  LT R+      +  GK++  IA  L + 
Sbjct: 155 LPTASLTALR------GALPDREESHMAVNEHLTERQRAVCDALRRGKSNKIIAGELNLC 208

Query: 214 RNTVNNYIASIMRKTATKTRSGAI 237
            +TV  +I +IM+K   K R+ A 
Sbjct: 209 ESTVKVHIRNIMKKLGAKNRTEAA 232


>gi|302560221|ref|ZP_07312563.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
 gi|302477839|gb|EFL40932.1| two-component system response regulator [Streptomyces griseoflavus
           Tu4000]
          Length = 266

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 56/226 (24%), Gaps = 3/226 (1%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       ++        +          +      A  E       L+   
Sbjct: 14  RIRVLVVDDHRIFAESLAAALAAEPDVDVSAAGSGPAALRCLERAAAEGRRFDVLLVDAD 73

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
              +       V      +      +S      +       +                  
Sbjct: 74  LGGKVPGGRPAVPVQAGDEDGLVDGMSLVTGVRSAQPLVRIVVLAEKDDPARAALALQAG 133

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + + +    + R+   +  +      +    L  +              +        L
Sbjct: 134 ASGWVAKDCSLNRLLTVIRGVLRDETHLPPALLTGVLRELTAARRHRTESERLVES---L 190

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           T RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 191 TPREREVLRCMVAGLGRKAVAERLYLSPHTVRTHMQNVLGKLGVHS 236


>gi|299141524|ref|ZP_07034660.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
 gi|298576860|gb|EFI48730.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris C735]
          Length = 318

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +     D +L+ RE + +  + +G ++ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 INPSTTGDDQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ N++V
Sbjct: 301 LTIYAIVNHLV 311


>gi|283782308|ref|YP_003373063.1| two component LuxR family transcriptional regulator [Pirellula
           staleyi DSM 6068]
 gi|283440761|gb|ADB19203.1| two component transcriptional regulator, LuxR family [Pirellula
           staleyi DSM 6068]
          Length = 229

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 66/223 (29%), Gaps = 18/223 (8%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEY------VGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           D   R++ +D  V+    + A  E+      VG +             K D ++      
Sbjct: 3   DNKPRVLVVDDDVAIMQCVGAFLEHHEQMDVVGYASHAQAGIAAAAALKPDVVLLDIHMH 62

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI-G 143
                 A  +             LF   F          A   +   S   +        
Sbjct: 63  GHDAFWACRQI--VDQSHGSAKVLFYTGFPRDQYLDRCIAAGASGMVSKHSESIHNVGIA 120

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +         +    +                   +   LT RE+E L  +SEG+++
Sbjct: 121 MRYVLQGNTYFSPELAKRLI---------ESESQAPQSRLATLTHREIEVLRQLSEGRSN 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  +V   ++ +  K    T +  + +A    ++
Sbjct: 172 REIAQSLDISLRSVEKEVSDLKEKVQMSTINELLMFAANEGLI 214


>gi|281425332|ref|ZP_06256245.1| hypothetical protein HMPREF0971_02305 [Prevotella oris F0302]
 gi|281400625|gb|EFB31456.1| transcriptional regulator, LuxR family domain protein [Prevotella
           oris F0302]
          Length = 318

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +     D +L+ RE + +  + +G ++ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 INPSTTGDDQLSEREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ N++V
Sbjct: 301 LTIYAIVNHLV 311


>gi|269961289|ref|ZP_06175655.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833955|gb|EEZ88048.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 214

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+
Sbjct: 148 APATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207

Query: 240 AVRN 243
           A +N
Sbjct: 208 ADQN 211


>gi|220921119|ref|YP_002496420.1| two component LuxR family transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945725|gb|ACL56117.1| two component transcriptional regulator, LuxR family
           [Methylobacterium nodulans ORS 2060]
          Length = 245

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 68/224 (30%), Gaps = 23/224 (10%)

Query: 11  VLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ 70
           ++  +DE     +  + +RS     ++      +   ++               R     
Sbjct: 29  LIADDDEFFRLAMVAILSRSLGFGEVVETGSLDAALDQLAQ-------------RASGIT 75

Query: 71  EQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
               D  +        +  +          V+   +E    +               + Y
Sbjct: 76  LALFDLAMPGMEGPGSLSAVRECFPWVKVAVVSGSSERHKIL--------AALEVGVHGY 127

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILR--DRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  + +   + ++      +      L       A  A+      +  G+  ELT 
Sbjct: 128 VPKGLGSSELTRAVGMILEGQIYVPPSLAVLDGRSRSTARPASEAAEGGLRGGRSVELTP 187

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           R+ + L  + EGK++ EIA  L +   TV  ++A+++R    + 
Sbjct: 188 RQRDVLALLVEGKSNKEIARQLQLGEGTVKVHMAALLRSLGVQN 231


>gi|156975940|ref|YP_001446847.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
 gi|156527534|gb|ABU72620.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116]
          Length = 214

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA+
Sbjct: 148 APATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207

Query: 240 AVRN 243
           A +N
Sbjct: 208 ADQN 211


>gi|70732431|ref|YP_262193.1| LuxR family transcriptional regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346730|gb|AAY94336.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           Pf-5]
          Length = 911

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%)

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
             L        +        +  L+ RE+  L  I++G ++ EI+  L IS +TV  + +
Sbjct: 827 QALLERLPAASREPQEIAAHNESLSSRELSVLQLIAQGCSNQEISERLFISLHTVKTHAS 886

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
            I  K   + R+ A+A A    ++
Sbjct: 887 HINSKLGVERRTQAVARAQELGLL 910


>gi|85706509|ref|ZP_01037602.1| two-component response regulator [Roseovarius sp. 217]
 gi|85668921|gb|EAQ23789.1| two-component response regulator [Roseovarius sp. 217]
          Length = 232

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 9/229 (3%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           E    +     +    D       L        +   + E    +  LLV         L
Sbjct: 2   ERPVVSPPSFSILIADDHWVVRQSLKQVARGIDKDVTVLEASSFNEALLVLAQNSGIGLL 61

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
              +      +      +  K     V+         V       +         Y   +
Sbjct: 62  LVDLIMPGFSEFEGLRLIRSKFPEIPVVIIS------VHEDSEYVLRAIQHGVIGYIPKS 115

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            +   I+  L  +        RD L     LA   A+   +       DF LT RE E +
Sbjct: 116 ANAQEIKHALSRVISGEVAFPRDILAR--TLAEPAASAVVTATDR-DSDFGLTRREAEIM 172

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T +  G    +IA  L I+R TV  ++A+ ++KT  K+R  A+ +A+ N
Sbjct: 173 TMLGGGAPVSDIADALDITRQTVRVHLANAIKKTGLKSREAAVRFAMEN 221


>gi|119776080|ref|YP_928820.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768580|gb|ABM01151.1| transcriptional regulator, LuxR family [Shewanella amazonensis
           SB2B]
          Length = 221

 Score = 86.5 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 7/136 (5%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V     +                  +  +  GL  +              I  +     N
Sbjct: 81  VERHSLDQEAALLLGIRGLLFADQRMDLMLTGLRKMVADELWFD---RPLISKMFRRLVN 137

Query: 172 MFKSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
              +              LTGRE   +  +  G  + EIA  L IS +TV  +I+SI RK
Sbjct: 138 KLDTNSDVSPDAMAMLQSLTGRECTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRK 197

Query: 228 TATKTRSGAIAYAVRN 243
           T ++ R   + +A  +
Sbjct: 198 TQSRNRVELLRWAQSH 213


>gi|154493926|ref|ZP_02033246.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
 gi|154086186|gb|EDN85231.1| hypothetical protein PARMER_03270 [Parabacteroides merdae ATCC
           43184]
          Length = 202

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK    + SG   YA+ N 
Sbjct: 134 TLSSREKEIVICVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASGLTVYAIVNK 193

Query: 245 IV 246
           ++
Sbjct: 194 LI 195


>gi|21222474|ref|NP_628253.1| LuxR family two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289770352|ref|ZP_06529730.1| luxR family two component system response regulator [Streptomyces
           lividans TK24]
 gi|5918474|emb|CAB56352.1| luxR family two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289700551|gb|EFD67980.1| luxR family two component system response regulator [Streptomyces
           lividans TK24]
          Length = 200

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 58/223 (26%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +S    +  + E   G     + R        LD  +     
Sbjct: 2   RVLLADDEHLIRGALAALLSLEDDLVVVAEAATGPEALAMARAHAPDVAVLDLQMPGADG 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
             +   +           L     L               A     +   T    R+   
Sbjct: 62  VKVATSLRAE--------LPACKVLIVTSHGRPGHLKRALAAGVRGFVPKTVSAQRLAEL 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R +  +                   D     D  LT RE E L   ++G   
Sbjct: 114 IRTVHAGNRYVDPELAA----------------DAISAGDSPLTAREAEVLEHAADGAPV 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA    ++  TV NY++S   K   + R  A+  A     V
Sbjct: 158 SEIAERAALAEGTVRNYLSSAASKLGAENRHAAVRLARERGWV 200


>gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 251

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 80/245 (32%), Gaps = 36/245 (14%)

Query: 29  RSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI----------- 77
            +DL AR+           R+ A+ + + A  F + R       +   +           
Sbjct: 15  AADLKARL--AANRGDIFPRLIAMQKAINARSFAVFRVAGSGLPRKRMLQCECESWAASG 72

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------------TPPAG 125
           +   +    V C          ++L        P+     +N             +    
Sbjct: 73  MVGSYSDAFVSCYGDLLLSHIDDLL-------LPLMWNAKDNATFCISSEFGAFVSRLPA 125

Query: 126 MD---NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA-NMFKSYDVHWG 181
            +   +         A     ++        +  D + ++   +     ++    +    
Sbjct: 126 GNLPFSGVAFPVRLGAVGNGYVIFALNGSEDLDSDVMIDMHNRSCKLMMDILSLSERKVA 185

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE+ CL    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+
Sbjct: 186 PSEALSDREIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAI 245

Query: 242 RNNIV 246
           R   +
Sbjct: 246 RLGYI 250


>gi|153834026|ref|ZP_01986693.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
 gi|148869670|gb|EDL68656.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01]
          Length = 214

 Score = 86.1 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
           +     G           + +I  GL  +      + R+       L  Y  N+  ++  
Sbjct: 92  DELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVT---SQLLHYYRNVISTHTA 148

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 +LT RE++ L  +  G +++++A  L +S  T+ +++  I +K + K R  AIA
Sbjct: 149 PA--TVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIA 206

Query: 239 YAVRN 243
           +A +N
Sbjct: 207 WADQN 211


>gi|303257286|ref|ZP_07343300.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium
           1_1_47]
 gi|302860777|gb|EFL83854.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium
           1_1_47]
          Length = 218

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 31/220 (14%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFD 85
           R+  +D    +   +  L E  G +                       LD  +      +
Sbjct: 15  RIRVIDDDEDFLKSLGLLLEMTGWTVRTYKSAKEFLSDENFSTPGCILLDLRMPEMTGLE 74

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           L R +    K+           +F      +   +         +     +     + L 
Sbjct: 75  LQRNLITQNKNN-------LPIIFLTGHGDVDSAVYTLKNGAFDFLQKPTNP----LLLN 123

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +  +              L+    N  +  +    +   LT RE E     ++GKT+ E
Sbjct: 124 KVIAEASQKS---------LSTQPKNSQRKEEYARYRS--LTPREKEIFKLAADGKTNKE 172

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           I+ +L I+  TV  +  +   K    +   A+       +
Sbjct: 173 ISSLLNIALPTVKMHRGNAFDKLNVHSSVEALKLYDSLGL 212


>gi|13475513|ref|NP_107077.1| response regulator FixJ [Mesorhizobium loti MAFF303099]
 gi|14026265|dbj|BAB52863.1| two-component, nitrogen fixation regulatory protein; FixJ
           [Mesorhizobium loti MAFF303099]
          Length = 204

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 23/167 (13%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      + +R +  S              +       +   +         +    
Sbjct: 55  DVRMPGIDGIEFLRQLRASGHTI--------PVIVMTGHADVALAVQAMKEGAADFIEKP 106

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           FD   +   +                                     +   L+ RE + L
Sbjct: 107 FDDEMLIEAIRSALANR---------------NQAHAAHPQSADIRDRLSTLSERERQVL 151

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
             +  G  +  IA  LGIS  TV  + A++M K A  + S  +  A+
Sbjct: 152 DGLVSGLPNKTIAYDLGISPRTVEIHRANVMSKMAAGSLSHLVRMAL 198


>gi|120600687|ref|YP_965261.1| two component LuxR family transcriptional regulator [Shewanella sp.
           W3-18-1]
 gi|120560780|gb|ABM26707.1| two component transcriptional regulator, LuxR family [Shewanella
           sp. W3-18-1]
          Length = 208

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 65/224 (29%), Gaps = 19/224 (8%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDW 82
             +    D    ++ L   +        + E   G     L++        LD  +    
Sbjct: 3   RKVLIVDDHPVVVLALKIILE-QSGFEVIAETNNGVDALKLMKALSPDAVILDIGIPQLD 61

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             +++      +  K   +L    +                    + + S   D+  +  
Sbjct: 62  GLEVIER--SRKLSKCPPILVLTAQPSEHFISRC------IQAGASGFVSKQKDMNEVTG 113

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            L  +              +   +                  +L+ RE+  L  ++ G +
Sbjct: 114 ALKAIITGHSYFPIISNNNMISKSNQDEAELVK---------KLSTREMVVLQHLAIGLS 164

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + EIA  + +S  T++ Y   ++ K   K     I  A R +++
Sbjct: 165 NKEIAERMLLSNKTISTYKTRLLDKLNAKNLVDIIEIAKRQSLI 208


>gi|330974001|gb|EGH74067.1| LuxR response regulator receiver [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 208

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGL----PSKILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L              +  
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALTCAVR---------EDG 137

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T   
Sbjct: 138 QTDELELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVE 197

Query: 236 AIAYAVRNNIV 246
            I  A RN +V
Sbjct: 198 LIEMAKRNALV 208


>gi|256392833|ref|YP_003114397.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359059|gb|ACU72556.1| two component transcriptional regulator, LuxR family [Catenulispora
           acidiphila DSM 44928]
          Length = 201

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 61/229 (26%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R  F   +      L  ++  +  +     +       G++    V         LD  
Sbjct: 2   IRILFAEDVGILRSALRELLSFEEDLDVVAEVDR-----GSAILPAVLEYRPDVAVLDID 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +      +    +           +     L      T              + S     
Sbjct: 57  LPELDGIEAAALLRDR--------VPECRVLILTALATPGHLRRAVQARVAGFVSKELRP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +   GR++    +                      +   L+ RE E L   
Sbjct: 109 AELAEAVRTVAAGGRVVDPALM----------------LAALEAQPSPLSQRETEVLRMS 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G    EIA  L +S  TV NY+ S + K   + R  AI  A     +
Sbjct: 153 ATGARPLEIAGRLFLSHGTVRNYLGSAVAKLDARNRIDAIRIAEEAGWL 201


>gi|27382418|ref|NP_773947.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355589|dbj|BAC52572.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 225

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 19/227 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS 79
           S +       D  A  + L   +        + E   G+               +D  + 
Sbjct: 15  SAMKRFLIADDHEAVRLGLRAVLEQRADWEVVAEANDGSKALTAAIESRPHVAIVDFSMP 74

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
                ++ R +                 L   V  +              + + +     
Sbjct: 75  RMTGVEVARRIRDYPLQTE--------VLIFTVHKSGLLAQQAFEAGARAFLTKSDANRS 126

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   +  L    R        E+   A               +   LT RE   +  ++E
Sbjct: 127 LLAAVDALLVHKRFCSESCRNELDHGA----------GGEADRGRGLTPREQLVVKLVAE 176

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++  I+ IL +S  T   + A+ MRK    + +G + YAVR  +V
Sbjct: 177 GYSNKGISAILNLSVKTTEAHRAAAMRKLDVNSTAGLVRYAVRAQLV 223


>gi|300936941|ref|ZP_07151825.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300457947|gb|EFK21440.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
          Length = 204

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +     + + +L  ++D+                +  LTE  G      V   
Sbjct: 1   MNAIIIDDHPLAIAAIRNLLIKNDI--------------EILAELTE--GGGAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                 +G L                K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSL-----------TSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|172063637|ref|YP_001811288.1| two component LuxR family transcriptional regulator [Burkholderia
           ambifaria MC40-6]
 gi|171996154|gb|ACB67072.1| two component transcriptional regulator, LuxR family [Burkholderia
           ambifaria MC40-6]
          Length = 224

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 68/240 (28%), Gaps = 40/240 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
            QQ  + +  +DE   + V  L                     R  A         F   
Sbjct: 9   AQQSIVYVVDDDESMRTAVDMLLRSVGF---------------RAEAFASAQEFLAF--D 51

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + D+     LD  +       +   +A ++             +F   +  +  ++    
Sbjct: 52  KPDVASCLILDVRLKGQSGLAVQEQIAAADL--------HLPIIFMTAYGDIAMSVKAMK 103

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +    F    +   +     +      +    + L A Y                
Sbjct: 104 AGAMDFLPKPFREQDMLDAVTTALERDARWRSEHRSLVDLRARYA--------------- 148

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE E + +++ G  + +IA  + +S  TV  +    M+K   ++ +  +  A    
Sbjct: 149 TLSAREREVMAFVASGLMNKQIAAEMNLSEITVKIHRGQAMKKMEARSLADFVKKAEALG 208


>gi|78184142|ref|YP_376577.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168436|gb|ABB25533.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902]
          Length = 239

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 9/231 (3%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTV--SWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
            R      LP   D    +   D     + T     +   VGA+       +      + 
Sbjct: 1   MREIRTRSLPVLRDRRTVIASADRVFITALTHLFEGIGPLVGAATSEQDALNCLTANDVQ 60

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
            +V +D          ++     +  L+    +  P+  T+   I          CS   
Sbjct: 61  LLVCTDLLESGSGPALVAAAKAQHPKLRCLMLIQRPLLSTIDAAIAS---GCEGLCSRER 117

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
                 + ++       I +   +  +      Q+      D        L+ RE + L 
Sbjct: 118 LGDGGVLSVLQAMDSDGIHMDPTITGVC----QQSRRRPILDGPPLLSDVLSLREEDVLR 173

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  G ++ EIA  L ++ +T+ + + S++RK   + R+ A+  A ++N+V
Sbjct: 174 GLCRGLSNQEIADQLHLAIDTIKHAVTSLLRKLEARDRTQAVLIAFQHNLV 224


>gi|114564331|ref|YP_751845.1| two component transcriptional regulator, LuxR family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114335624|gb|ABI73006.1| two component transcriptional regulator, LuxR family [Shewanella
           frigidimarina NCIMB 400]
          Length = 227

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 28/232 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           + Q+ + +  +     + ++    +S   A+++  +        +               
Sbjct: 2   MSQIKVAIADDHPLFRAALTQAVQKSVNNAQVLEAENFQELIAIVEQ------------- 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   +D  +  +  F  +  +          V+   +    P             
Sbjct: 49  -HPDIELIFIDLHMPGNDGFTGLTLLQN---HFPDIVVIMVSSDDQP-----EIIRKAIN 99

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + +   + ++ +I   + ++   G  +            A +            +  
Sbjct: 100 FGASAFIPKSANLTQISTAIDIVLEGGIWLPEHTNISADQHTAAEHQRLAK------QLA 153

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
           +LT ++   L  I+ G+ + +IA  L I   TV  ++++I+ K     R+ A
Sbjct: 154 QLTPQQYTVLANIANGRLNKQIAYDLNIKETTVKKHVSAILLKLEINNRTQA 205


>gi|296446535|ref|ZP_06888477.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
 gi|296255889|gb|EFH02974.1| two component transcriptional regulator, LuxR family [Methylosinus
           trichosporium OB3b]
          Length = 209

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 67/221 (30%), Gaps = 18/221 (8%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D    +      +S    +  +  +   +              LD  +     F
Sbjct: 2   RVLIVDDHPMVIEGCRGMLSGQADIEVIEAHDAEAALKSHASSAPDVTVLDINLPDASGF 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL+R +   +         +   +   +                 Y +   D A     +
Sbjct: 62  DLLRSLLERD--------AQSKIIVFTMNDDPMFAARSIEQGARGYVAKNEDPASFVKAI 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R +  D   ++            S          L  RE++ L  +++GK   
Sbjct: 114 RAVAGGERYLSGDLALKVAF----------SDKRTGNPLDVLNERELDILRHLADGKDMT 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E+A  + +S  T+ N  A + RK   ++RS  I  AV N +
Sbjct: 164 EMAFAMKVSYKTIANSCALLKRKLGARSRSDLIRIAVENRL 204


>gi|330895602|gb|EGH27910.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 260

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 41/243 (16%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV----------RWDLFQEQKLDSIVSS 80
           D L +++ +D        +    E  G                           D  +  
Sbjct: 4   DPLTKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIERFNADSTIGIVLCDLEMPG 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++V  M ++    +         +         + I         Y     D+  +
Sbjct: 64  MNGIEMVEAMKMTGGKTH-----LFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEEL 118

Query: 141 RIGLML--------------------------LFPKGRIILRDRLWEIGLLAAYQANMFK 174
             G+ L                                    D +      A    +  +
Sbjct: 119 LGGVQLQVQALHERQKNRQQLGLLNEKLQFLAASIDDLYKNLDSVQNNPQPARKARDRQE 178

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 179 RDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 238

Query: 235 GAI 237
              
Sbjct: 239 QLA 241


>gi|302529295|ref|ZP_07281637.1| predicted protein [Streptomyces sp. AA4]
 gi|302438190|gb|EFL10006.1| predicted protein [Streptomyces sp. AA4]
          Length = 202

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 58/229 (25%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R +         D L  ++ L+  ++            G     L          LD  
Sbjct: 3   IRVALAEDQRVLRDALVALLQLERDITVAGVAER-----GEEAAQLAGNLKPDVLILDIG 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       +   +           ++                        + +       
Sbjct: 58  LPDVSGLTVASRIRAQF-----PAVRILL---LTSLDKPGVVREALTLGVSGFLPKGVAA 109

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
           A +   +  +    R++  D +                       +  LT RE   L   
Sbjct: 110 AELVEAIRGVHAGKRVVSPDLV----------------SAALAAGENPLTPRERSILQLA 153

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G     IA  L ++  TV NYI  I+ K + +  + AI  A     +
Sbjct: 154 ATGTPPPHIAHQLHLAEGTVRNYITRIISKLSARNSTDAIRIAKHYGWL 202


>gi|260885074|ref|ZP_05896688.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260874602|gb|EEX81671.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
          Length = 254

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 89  AVMIHIGSKRLADPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 148

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 149 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 196

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G ++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 197 VHAIRLGLSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|333029774|ref|ZP_08457835.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
 gi|332740371|gb|EGJ70853.1| transcriptional regulator, LuxR family [Bacteroides coprosuis DSM
           18011]
          Length = 206

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 45/89 (50%)

Query: 158 RLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTV 217
            + ++   A    +      ++  +  EL+ RE++ ++ I+ GKT+ EIA  L IS+ TV
Sbjct: 113 SIMDLHRNAHEPNHSKNMEAINAHQVHELSPREIDVISLIAVGKTNKEIAKKLSISQTTV 172

Query: 218 NNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             +  +I  K   K+ SG   YAV N  +
Sbjct: 173 ITHRKNITDKLGIKSVSGLTIYAVINGYI 201


>gi|327405789|ref|YP_004346627.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
 gi|327321297|gb|AEA45789.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Fluviicola taffensis DSM 16823]
          Length = 186

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E L  I++G ++ EIA  L +S NT+  + + +  K     R+ A+  A R  I+
Sbjct: 125 SKRELEVLELIAQGFSNHEIAERLFVSLNTIKTHSSKLFEKLEVNRRTQAVEVAKRLGII 184


>gi|304390505|ref|ZP_07372458.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657713|ref|ZP_07910593.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304326261|gb|EFL93506.1| two component system response regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491510|gb|EFU81121.1| two component system response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 223

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 24/238 (10%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +D       + L    D +  +           +M                  
Sbjct: 5   IRVLIADDDLVIQESFARLLDGEDGIEVVATAPNGAEALTKMTR---------------- 48

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      +  + +  +          + T +    F          A   
Sbjct: 49  GIDVALIDVDMPILDGIETAKLIRKN--------YPQTTIIMLTAFEHEDALAQSLAVGV 100

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             + +     A + + +        +        +      ++     Y         L 
Sbjct: 101 QGFLTKNTTPAEVAVYIKKALSGQAVYDSRPTDILTQSYTEKSLTQAQYQDFIDAVDTLP 160

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           GR       + + KT+ EIA  L +S  TV +Y++ I+  T  K+R      A R  I
Sbjct: 161 GRFKSVFAQLLDAKTNKEIAKELYMSPATVRSYVSEILAHTGCKSRGQLAIIAARAGI 218


>gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 248

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 21/233 (9%)

Query: 33  LARMIPLDCTVSWTM---RMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           L+R+  +            M  L +    + + L    L  +Q+L   +  +W       
Sbjct: 17  LSRLHRISGRSDLFPKLVSMQKLIDAQNFALYRLSGSGLPSKQRLVCEL-ENWGSANPVM 75

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHT----LPENITPPAGMD-----------NRYCSLT 134
                +     +++   +   P+            TP                       
Sbjct: 76  NKAFVEAYGEAMIEHIEKSLLPLMWNGRDSDSTAETPDFAAFTQRLKPHLLPFAGVAFPV 135

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVEC 193
              +     ++    K   +  D + E+   +        S D       E L+ RE+ C
Sbjct: 136 RLGSVGNGYVVF-TAKFMDVASDMIVELHGRSCQIMMELLSLDERRSPAAEALSEREIAC 194

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L    +G+ S+EIA  LG+S +TVN Y+ S   K  +  R  AIA A+R   +
Sbjct: 195 LQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRFGYI 247


>gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina
           MBIC11017]
          Length = 87

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 40/62 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           + +L+ RE++ +  ++ G  ++EI+  L IS+ TV+N+I++I+ KT T  R   + +A++
Sbjct: 9   NHQLSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQ 68

Query: 243 NN 244
             
Sbjct: 69  WG 70


>gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 824

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 39/82 (47%)

Query: 165 LAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
           L     +  +S          LT RE+E LT  +EG   +EIA  L +S  TV  ++A+I
Sbjct: 743 LLEACEHYIESLSRAPESTVTLTERELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANI 802

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            RK     R+ A+  A +  I+
Sbjct: 803 YRKLEVGGRTAAVKKAGKLKII 824


>gi|159898988|ref|YP_001545235.1| ATP-dependent transcription regulator LuxR [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892027|gb|ABX05107.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 860

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 7/147 (4%)

Query: 101 VLQRPTELFCPVFHTLPENITPPAGMDN-RYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159
            +     +   +   L      P  +   ++     +   I   L+ L      +L+   
Sbjct: 719 FVPLLVSIHATLAMVLARQGQLPKALTELQHALTIAEPELIIQPLLDLQAGLIPLLQQLP 778

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNN 219
               +L     N  ++ D+        T RE E L +++ G  +  IA  L I+ +T+  
Sbjct: 779 SSPLVLRLLHHNRLETLDLAI------TPREHEILRYLAAGLGNRAIAEALVIAESTLKR 832

Query: 220 YIASIMRKTATKTRSGAIAYAVRNNIV 246
           +I+++  K     R+ AI  A    ++
Sbjct: 833 HISNLYLKLDVHNRTAAIVKAREQGLI 859


>gi|329961768|ref|ZP_08299799.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328531509|gb|EGF58349.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 186

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              + EL+ RE+E L  I++G  + EIA  L IS  TV ++  +I  K   K+ SG   Y
Sbjct: 115 HPGEHELSAREIEVLVLITKGLINKEIADKLNISLTTVISHRKNITEKLGIKSVSGLTIY 174

Query: 240 AVRNNIV 246
           AV +  V
Sbjct: 175 AVMHGYV 181


>gi|330444975|ref|ZP_08308629.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493093|dbj|GAA03126.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 211

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   + D+  +   L  +         +            +   ++Y     K   
Sbjct: 101 GAFGFIPKSSDMRALISALNQVLDGEPFFPDN-----------ISENNQAYRDLADKIAT 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT ++ + L  +S+G+ + +IA  L +S  T+  ++ +I RK   K R+ A+    + ++
Sbjct: 150 LTPQQYKVLGMLSDGQLNKQIAYDLNVSEATIKAHMTAIFRKLDVKNRTQAVILLQQLDL 209


>gi|167462440|ref|ZP_02327529.1| Two-component response regulator ComA [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383891|ref|ZP_08057631.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151606|gb|EFX44686.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 209

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 71/235 (30%), Gaps = 35/235 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +          +    + +  +                    G     LV+ + 
Sbjct: 6   TVLIVDDHPAMAFGTKMILEARENIRVIGIASS---------------GEEGLSLVKSER 50

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      ++   M  +         +    +       +P      +   +
Sbjct: 51  PDIVFLDFHLPDMTGLEVASGMMKTH--------EELKIVIFTGIDFMPILNNLLSLGIS 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              S      +I   +  L      I  +   ++ L                     LT 
Sbjct: 103 GIMSKDSSEEQITNMVNCLIEGQTAISLELFRQLQL------------GKGEDDGTALTD 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            E+  +  I +G T+++IA ++ +S+ +V+NY+  I  K   K+R+ AI   ++ 
Sbjct: 151 EEINIMNQIIKGATNEQIAEVIHMSKRSVDNYVRKIYDKFGVKSRAQAIEKFIQM 205


>gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea
           MMB-1]
          Length = 254

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF----ELTGREVECLTWISEGK 201
            +    R   +     I L+  Y  +   +      K       LT RE E L WIS GK
Sbjct: 154 TVVAARRTSSQCNCHLIELIMPYLHSACSAASRIQRKSSSPINVLTSREREVLNWISSGK 213

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           T+ EI++ILGIS NTV N++ASI+ K     R  A A 
Sbjct: 214 TNGEISMILGISPNTVKNHVASILGKLNAPNRLAATAL 251


>gi|325981549|ref|YP_004293951.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325531068|gb|ADZ25789.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 222

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 55/237 (23%), Gaps = 26/237 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  I+L  +       ++ L      +               +    +            
Sbjct: 6   KSKIMLVDDHAMIRHGMAMLINMEADMEVTCEAGDGPEAIEIIKKNIKE----------N 55

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  + S    ++++ +           L                        
Sbjct: 56  IPIDILILDVSLKSVSGLEIIKSIQSL-----APSLPVLFISM---HDESVYAERALRAG 107

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL-WEIGLLAAYQANMFKSYDVHWGKDFE 185
              Y         +   +  +      + +      +  +A        +          
Sbjct: 108 ARGYVMKQEPRNVLIAAIREVLKGNIFLSKSIQEQVLKRIAVRGYEQEATVSA------- 160

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           LT  E E    I  G  S EI+ +L  S  T+  +  +I  K   +     I YA +
Sbjct: 161 LTPSEFEVFHLIGLGYNSHEISNLLSRSVKTIETHRFNIRTKLKLRDTGDLIRYATK 217


>gi|257067005|ref|YP_003153261.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
 gi|256798885|gb|ACV29540.1| two component transcriptional regulator, LuxR family [Anaerococcus
           prevotii DSM 20548]
          Length = 198

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  + +G    +IA  L IS  T+ N+IA+I  K   K    A   A+   
Sbjct: 133 PLTNRELEVLEELIKGSRKKDIAQKLYISERTLYNHIANIYEKLGAKNIVEAYNKAMELG 192

Query: 245 IV 246
            +
Sbjct: 193 YI 194


>gi|158934478|emb|CAP16141.1| putative response regulator [Prosthecobacter vanneervenii]
          Length = 169

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
              L  N   P      Y        ++   +  +      +       + +L ++ +  
Sbjct: 37  DWMLRPNRMKPRAGARGYLMKQAPPDQVVAAIRQVLRGELYLS--AAANLLMLNSFVSGK 94

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                    K   L+ RE+E    + +G+ +  IA  L +S  TV  + + I  K    T
Sbjct: 95  DHGSKSMVEK---LSDRELEIFELLGKGRGTSMIAHDLRLSVKTVEAHRSHIKAKLGIST 151

Query: 233 RSGAIAYAVR 242
               +  AV 
Sbjct: 152 APELVRAAVE 161


>gi|126732902|ref|ZP_01748692.1| putative transcriptional regulator protein [Sagittula stellata
           E-37]
 gi|126706608|gb|EBA05683.1| putative transcriptional regulator protein [Sagittula stellata
           E-37]
          Length = 242

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 60/223 (26%), Gaps = 11/223 (4%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   +S +    D       L   +     +    +     H L V  D F     D 
Sbjct: 7   AARDEGISSVLIVDDHPLFSDALASALEGVFPLCRFEKARSLKHALKVLDDGFA---PDL 63

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           ++      D+                            +            + + +    
Sbjct: 64  VMFDLKLPDVQGISGFVTLRGRLPDTPVLVISSLT---SRALVHALMEEGASGFLTKDTP 120

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V  ++  L  +    + +  +                        K   LT ++ + +  
Sbjct: 121 VEDLQHALQEIANGRKHVPMEYRQN-----PVAEVSEADGSDMNAKLAALTPQQKKVIKL 175

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I  GK + +IA  L ++  TV  +I +++R+     R+ A   
Sbjct: 176 ICAGKPNKQIAYELQLAEATVKAHITALLRRLGVNNRTQAALM 218


>gi|157369529|ref|YP_001477518.1| two component LuxR family transcriptional regulator [Serratia
           proteamaculans 568]
 gi|157321293|gb|ABV40390.1| two component transcriptional regulator, LuxR family [Serratia
           proteamaculans 568]
          Length = 213

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 111 PVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQA 170
                        A   N +      + ++ + +  +           + E         
Sbjct: 94  TAQEEEIYARMAYAAGANGFVHKGSRLEQLVLAIETVLAGELSFPAAAMAE--------- 144

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                 +    +   LT +E++ L  +S+G ++ +IA +L IS  TV+ +  +I+RKT  
Sbjct: 145 ------ETQPTEGSLLTPKELQILGLLSKGLSNLQIAEMLSISNKTVSTHKKNILRKTGA 198

Query: 231 KTRSGAIA 238
                 +A
Sbjct: 199 SNLLELVA 206


>gi|53748098|emb|CAG38884.1| putative response regulator BvgA [Bordetella trematum]
          Length = 207

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 27/220 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHF----------LLVRWDLFQEQKLDSIVSSDWPFD 85
           ++ +D        + AL E  G               + R  L     LD  +      +
Sbjct: 4   ILIIDDHPVIRFALKALMEREGFEIVGETDNGLDGISMAREMLPNLVILDIAIPKLDGLE 63

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           ++  +          +         P                  + S   ++  +     
Sbjct: 64  VLTRLQALGL----PMHVLILTGQQPA----LFARRCLNAGAAGFVSKHGNLQEVVDAAK 115

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +        +  L +I             +         L+ RE+  L  +S+G T+ +
Sbjct: 116 AVVAGYTYFPKTTLSDI---------RGTEHQDDAMLIASLSNRELAVLQLLSQGLTNKD 166

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IA  + +S  T++ Y   +++K    T    I  A RNN+
Sbjct: 167 IADSMFLSNKTISTYKTRLLQKLNATTLVELIDLAKRNNL 206


>gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl]
 gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Chloroflexus sp. Y-400-fl]
          Length = 916

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            L+ RE+E L  ++EG+++ EIA  L I+ +TV +++ +I  K    +R+ A+A   R  
Sbjct: 854 PLSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVARGRRLG 913

Query: 245 IV 246
           ++
Sbjct: 914 LI 915


>gi|254433440|ref|ZP_05046948.1| Sigma-70, region 4 family [Nitrosococcus oceani AFC27]
 gi|207089773|gb|EDZ67044.1| Sigma-70, region 4 family [Nitrosococcus oceani AFC27]
          Length = 208

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 32/215 (14%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSDWPF 84
           A +  +D        +  + E  G    +                    LD  +      
Sbjct: 8   ATVFVVDDDEGVRDSLRWVIESAGFKVKVYASAGEFLEKWEPSQPGCLVLDVRMPEISGL 67

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
            L + ++         ++        P      + ++        +    FD   +   +
Sbjct: 68  QLQKLLSKKN--NLLPIIFISAHGSVP------DAVSALHDGAVDFLVKPFDNQILIERI 119

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                               +   +    +  +    +  +LT RE + +  I  GK + 
Sbjct: 120 QSSLD---------------MDRRKRERRQQREKIAHRMTQLTARERQVMDLIVMGKANK 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +A+ LGIS  TV  + + +M K A +     I  
Sbjct: 165 VVAMELGISTKTVEIHRSRVMEKLAARNLVELIHL 199


>gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis]
 gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 246

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMF--KSYD 177
           P       Y  L+ D     + +     +       R    +I LLA         +   
Sbjct: 112 PLPRQAVSYPLLSVDGRGAILAIASNACEEEWRRFRRCHDRDIHLLAGKFHAGLVKRCDG 171

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              G    LT RE E L W + GK+  E AVILGIS  TV  ++A+   K    + + A+
Sbjct: 172 TRLGGVPTLTRREQETLRWTAAGKSYWETAVILGISERTVRYFMANARTKLDAVSNTQAV 231

Query: 238 AYAVRNNIV 246
           A A++  ++
Sbjct: 232 AKALQRGLI 240


>gi|323137366|ref|ZP_08072444.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
 gi|322397353|gb|EFX99876.1| two component transcriptional regulator, LuxR family [Methylocystis
           sp. ATCC 49242]
          Length = 206

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 17/221 (7%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
            +    D    +      ++    +  +      +              +D  +     F
Sbjct: 2   RVLIVDDHPIIVSGCAAMLAAEGDIDVVDARDAETGLAAFVEHKPDVTVVDIGLPGVSGF 61

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L R +   +         +   +   +                 Y +   D   +   +
Sbjct: 62  ELTRRILDQK--------PQALIVVFSMNDDPIFAARAIEAGAKGYVTKNDDPFLLLEAV 113

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +   G  ++     ++          F+           LT RE+E L  +  G    
Sbjct: 114 REVASGGVFLMPKIANQLA---------FEKRGGAANPLAALTARELEILRMLGSGLGMA 164

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EIA    +S  T+ N  + + RK   +T    +  A+   +
Sbjct: 165 EIAEATQVSYKTIANSCSIMKRKLGARTPMELMRIALAQKL 205


>gi|306844463|ref|ZP_07477053.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
 gi|306275276|gb|EFM57026.1| Monoamine regulon transcriptional regulator [Brucella sp. BO1]
          Length = 245

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 80  AVMIHIGSKRLADPFFSGEMQSIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 140 DTRVCVEAIHLATAGGMYVPASMVTKPAAADIDEDVLGEL------------LTAREVEV 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 188 VHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
 gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110]
          Length = 208

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
           +           Y         +   +  +    R +          +A    +   S  
Sbjct: 90  QIRRAVDAGVRGYLLHDCSAEELSEAVRCVAEGRRYLS-------CPVADQLLDNLSSAV 142

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                    T RE+E L  +++G  + +I   LGI   TV  ++ +I+RK    TR  AI
Sbjct: 143 P--------TARELEVLRLMAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAI 194

Query: 238 AYAVRNNIV 246
             A R  ++
Sbjct: 195 GEAFRCGLL 203


>gi|239815151|ref|YP_002944061.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|319794387|ref|YP_004156027.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|239801728|gb|ACS18795.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
 gi|315596850|gb|ADU37916.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 210

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 71/241 (29%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R               +         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAESFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  ++     +L   +          ++             +P  +
Sbjct: 52  VA--------CLIVDIRMAGMTGLELQDRLIERRSPL--PIV------VITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F+   +   +            +R+ E    A  Q     S D   
Sbjct: 96  DSMKKGAMDFIQKPFNDEELVTLV------------ERMLEHARGAFTQHQQSASRDALL 143

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            K   LTGRE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 144 SK---LTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|170696542|ref|ZP_02887665.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
 gi|170138538|gb|EDT06743.1| two component transcriptional regulator, LuxR family [Burkholderia
           graminis C4D1M]
          Length = 229

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 30/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +             +   +  +     +      +                  
Sbjct: 5   VKVVIADDHPVILFGAEQALLKFPGIQVVARARQSTELIKVLQTAA-------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMA-LSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  D  +      D +  +  L        ++         +              
Sbjct: 51  -CDVLVTDLAMPGGQYGDGLPLVGYLRRNFPNLPIV------VLTMLENAALLQRLRELG 103

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
                + + D++ I + +  +      +       +        +  +        +  L
Sbjct: 104 VTSVVNKSDDLSHIGLAVQHVSRHLEYLSPSVKASL--------DALRMNSGGKSDEVML 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + RE+E +     G T  EI+  L  S  T++    + MRK      S    YA  N ++
Sbjct: 156 SRRELEVVRLFVSGMTIKEISEQLNRSIKTISTQKNTAMRKLGIDRDSELFQYAQSNGLL 215


>gi|94969375|ref|YP_591423.1| two component LuxR family transcriptional regulator [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551425|gb|ABF41349.1| two component transcriptional regulator, LuxR family [Candidatus
           Koribacter versatilis Ellin345]
          Length = 219

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 12/214 (5%)

Query: 35  RMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVS-SDWPFDLVRCMAL 92
           R+  ++      +   AL +             +L   + +D ++  S    +L   MA 
Sbjct: 12  RIAVVESDPLRFVGFRALFDAESDLELMSATVAELANRKDVDLVLLGSRNGQNLFDVMAS 71

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            +  +          +           +   A     Y       A     + ++     
Sbjct: 72  LKAARPD-----LRIIVTGTGADDETILKAVAAGAKGYVDEAASPAEFVQAIRIVNQGSV 126

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              R  L                           T RE E L  +  G+++ EI   LGI
Sbjct: 127 WAPRRVLSIFIERVTSSPGRIFPAGRV-----TFTDREKEVLELLVAGRSNKEIGSALGI 181

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              TV  ++A +MRK   + R     +A+ +++V
Sbjct: 182 EERTVKAHVAKLMRKVGVQNRIALSVHAITHSLV 215


>gi|84516508|ref|ZP_01003867.1| two-component response regulator [Loktanella vestfoldensis SKA53]
 gi|84509544|gb|EAQ06002.1| two-component response regulator [Loktanella vestfoldensis SKA53]
          Length = 130

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           I+      N Y         + I +         I      +I       +++ +     
Sbjct: 7   ISALRAGANGYVLKDATPTELTINIKHTLAGRSPISPALTADI------ISDLLEIKYPT 60

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D +LT RE+E L  ISEG +  + A  +G+  +TV++Y  ++ RK    ++S A+  
Sbjct: 61  HDPDEKLTKREIELLERISEGLSYAKCANEMGLQLSTVHSYSRALFRKLGINSKSQAVLE 120

Query: 240 AVRNNI 245
           A +  I
Sbjct: 121 AQKFGI 126


>gi|154686409|ref|YP_001421570.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154352260|gb|ABS74339.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 192

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 20/203 (9%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYV------GASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           + R++ +D        +  L E        G SH         ++ K D ++        
Sbjct: 1   MIRVLLVDDHTMIRKGLRVLLEGYPEIKIVGESHNGNDAILKTRQLKPDVVLMDLSMPTG 60

Query: 87  VRCMALSE--KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +     S         V      +   ++                Y         +   +
Sbjct: 61  LDGFTASSEILKLSLPV----KIIILTMYDEEIFVQKAIEVGAYGYILKNSHYELLYKAI 116

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
           + +             EI  L+ +  +  K           LT RE E +  I  G T+ 
Sbjct: 117 VEVSLGKLFYKTSVSQEI--LSQWMTSESKKIFSV------LTVREKEIVRLIVLGYTNK 168

Query: 205 EIAVILGISRNTVNNYIASIMRK 227
           EIA  L IS  TV N+  +IM +
Sbjct: 169 EIANELSISFKTVENHKTNIMHR 191


>gi|152981441|ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281518|gb|ABR89928.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 197

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 47/176 (26%), Gaps = 25/176 (14%)

Query: 64  VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPP 123
                 Q   LD  +       L   +      + + V+      F      +P  +   
Sbjct: 45  ATSPQGQCILLDVRMPEVSGVALFDLLTSRGLTQTFPVI------FLTGHGDVPMAVDTL 98

Query: 124 AGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
                 +    F+  ++   +                                     + 
Sbjct: 99  KRGAFDFFEKPFNDNKLMDRIQEALASSEHASASV-------------------AIHTRL 139

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             L+GRE E L  I EGK +  IA  LGIS  TV  + A I  K   KT       
Sbjct: 140 AALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHIFDKMNVKTAVELARL 195


>gi|329954342|ref|ZP_08295434.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
 gi|328527610|gb|EGF54603.1| transcriptional regulator, LuxR family [Bacteroides clarus YIT
           12056]
          Length = 233

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   L     K R I       +        N   +      +D  
Sbjct: 111 MAFGVVLKDNSREEILTALQCASRKERFICNHVSNLL-----LSGNNQPAAPHPALQDAL 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK +      A  YA++  I
Sbjct: 166 LTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLSVNNAHEATKYAMKAGI 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|190014846|ref|YP_001967610.1| TraR [Agrobacterium tumefaciens]
 gi|71849649|gb|AAZ50597.1| TraR [Agrobacterium tumefaciens]
          Length = 234

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 24/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + H   +   LA +            +  + E+ G + +  +       Q       +++
Sbjct: 1   MQHWLDKLTDLAAIEG--DECILKTGLADIAEHYGFTGYAYLHI-----QHRHITAVTNY 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNR 129
             +        +      V++R                                 G+ + 
Sbjct: 54  HREWQSTYFDKKLVALDPVVKRARSRKHIFTWSGEQERPSLSRDERSFYARAADFGIRSG 113

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----AYQANMFKSYDVHWGKDFE 185
                           L   K  I L   +  +   +     +    +            
Sbjct: 114 ITIPIRTANGSMSMFTLASDKPVIDLDREIDAVAAASTIGQIHARISYLRTTPTAEDAAW 173

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +EIA + G+  N+V   +   M++    +++  IA A+R  +
Sbjct: 174 LDPKEASYLRWIAVGMTMEEIADVEGVKYNSVRVKLREAMKRFDVHSKAHMIALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|212695640|ref|ZP_03303768.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677313|gb|EEB36920.1| hypothetical protein ANHYDRO_00157 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 198

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE+E L  + +G +  +IA  L IS  T+ N+IA+I  K   K    A   A+   
Sbjct: 133 PLTKREIEVLEELIKGSSKKDIAAKLFISERTLYNHIANIYDKLRAKNIVEAYNKAMELG 192

Query: 245 IV 246
            +
Sbjct: 193 YI 194


>gi|207724132|ref|YP_002254530.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206589341|emb|CAQ36303.1| response regulator protein [Ralstonia solanacearum MolK2]
          Length = 210

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 39/235 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +DE     ++ L   +    R            +                R + 
Sbjct: 14  TVFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLIDDK----------------RNEG 57

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +      +L   +          ++      F      +P  ++       
Sbjct: 58  VGCLILDVRMQGMSGPELQDRLLAENNRM--PIV------FVTGHGDVPMAVSTMKKGAV 109

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD + +R  +       R++ + R  +         +  +           LT 
Sbjct: 110 DFIEKPFDESELRELV------ERMLSKARTED---------SAAREQKAALDLLSRLTT 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A+  
Sbjct: 155 REQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKFNVNTVADLLRLALSR 209


>gi|311895197|dbj|BAJ27605.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 15/216 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVR------WDLFQEQKLDSIVSSDWPFDLVRC 89
           ++  D   +    + ++ E  G +  +                + D +V      D    
Sbjct: 12  VLLADVQPAIRQGVRSMVEDAGGAVVVGEAGTSGEALAAASRHRPDVLVLDPQMDDGTGL 71

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
             +S+  +                                Y        +I  G+  +  
Sbjct: 72  RTISQVLRLTPETGVLVFSTL---DDDKAVAAAFRAGARGYLVKRATADQIVRGIHAVGA 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
              I+ R     +G L                   +L+ RE E L  ++ G+++  IA  
Sbjct: 129 GEAILDRTIAARLGTLMGT------GSRPRSYPFPQLSDREREVLEHLAAGRSNTVIARE 182

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L ++  TV+N ++ I+ K     R+ A+  A    +
Sbjct: 183 LALASKTVSNRVSGILGKLGVADRAQALVLARDAGL 218


>gi|330894542|gb|EGH27203.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 220

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +  + +L   +            +                 
Sbjct: 8   PLRVIVADDHPIFLIGLRVVLEQDNLATVVAEACNPDELLQVLAR--------------- 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAG 125
                   D ++  +   D +R +    +D     V+   T     +F ++ +       
Sbjct: 53  HPCDVLVTDFMMPVELQNDGLRLLQRIHRDFPALPVIVVTTLSNAGLFQSMLDLN----- 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S       +   +  +      +       +     Y  +     +       +
Sbjct: 108 -VRGLLSKASLAGELPAAIRGVQRGEFFVADSVRRVLREARQYGPDELLPAE-------K 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S G T  +IA  L  S+ TV+    + MRK      +    Y   + +
Sbjct: 160 LSPRELEVLRLLSAGHTVGQIAAQLNRSKQTVSAQKVAAMRKLGLANDAALFIYLQESGM 219


>gi|306842522|ref|ZP_07475173.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
 gi|306287378|gb|EFM58858.1| Monoamine regulon transcriptional regulator [Brucella sp. BO2]
          Length = 245

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 16/165 (9%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 80  AVMIHIGSKRLADPFFSGEMQSIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVE 192
           D       + L    G  +    +              K   V   +D     LT REVE
Sbjct: 140 DTRVCVEAIHLATAGGMYVPASMVT-------------KPVAVDIDEDVLGELLTAREVE 186

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 187 VVHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|317047367|ref|YP_004115015.1| LuxR family two component transcriptional regulator [Pantoea sp.
           At-9b]
 gi|316948984|gb|ADU68459.1| two component transcriptional regulator, LuxR family [Pantoea sp.
           At-9b]
          Length = 194

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 30/218 (13%)

Query: 23  VSHLPTRSDL-LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
           ++ L    D  L  +      V+  + +        A    L++        LD  +   
Sbjct: 1   MAALLLIDDHPLVEVALSAACVNSPIPLQLFAAGDEAQARQLLQQHAMDLVILDIGLPDS 60

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              +L+R +          VL    E       +    +   +     Y   +  +A++ 
Sbjct: 61  DGLELLRRL--RVHHPDCPVLIYSAEQ------SRHTLLRAASLGAAGYVVKSQSMAQLL 112

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++ +    +                        D+    D  LT +E + +  ++ G 
Sbjct: 113 SAILAVLGGQQAFP---------------------DLPERIDLPLTEKEQQIVALLARGL 151

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++ +IA  L IS  TV+ +  +I+ KT  ++     A 
Sbjct: 152 SNLQIAEQLHISNKTVSTHKKNILEKTGVQSVVELAAL 189


>gi|253572201|ref|ZP_04849605.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|251838381|gb|EES66468.1| luxR family transcriptional regulator [Bacteroides sp. 1_1_6]
          Length = 200

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +   A +     K        +     L+ RE+E L  I++G  + EIA  L IS  TV 
Sbjct: 108 LHQHAHHNGYPVKDMPPIAMPEVHQEILSAREIEVLVLITKGLINKEIADKLNISLTTVI 167

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I  K   K+ SG   YAV N  +
Sbjct: 168 THRKNITEKLGIKSVSGLTIYAVMNGYI 195


>gi|10954936|ref|NP_053356.1| hypothetical protein pTi-SAKURA_p118 [Agrobacterium tumefaciens]
 gi|6498289|dbj|BAA87741.1| tiorf116 [Agrobacterium tumefaciens]
          Length = 234

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 72/241 (29%), Gaps = 24/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + H   +   LA +            +  L E+ G + +  +       Q   +I  +++
Sbjct: 1   MQHWLDKLTDLAAIQG--DECILKDGLADLAEHFGFTGYAYLHI-----QHKHTIAVTNY 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNR 129
             D       +  DK   V++R                                 G+ + 
Sbjct: 54  HRDWRSAYFENNFDKLDPVVKRAKSRKQVFAWSGEQERSRLSKEERAFYAHAADFGIRSG 113

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWGKDFE 185
                           L   +  I L   +        +   +    F            
Sbjct: 114 ITIPIKTANGSMSMFTLASERPAIDLDREIDAVAAAGAVGQLHARISFLQTTPTVEDAAW 173

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +E+A + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGMTMEEVADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|300855506|ref|YP_003780490.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435621|gb|ADK15388.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 824

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L+  ++G    ++A  LGIS +T   ++ +I +K     +  A+  A    I
Sbjct: 764 LSQRELEVLSLTAKGLKRTQVACKLGISESTAKTHLQNIYKKLQVSGKFEAVKIARMYGI 823

Query: 246 V 246
           +
Sbjct: 824 I 824


>gi|293369467|ref|ZP_06616050.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
 gi|292635465|gb|EFF53974.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC
           3f]
          Length = 219

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +            D  
Sbjct: 98  MAFGIVMKDNSKEEIMTAIQCATRKQRYICNHVSNLL------LSGTSSPLAASSMDDHL 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|78063560|ref|YP_373468.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77971445|gb|ABB12824.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. 383]
          Length = 216

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 53/231 (22%), Gaps = 29/231 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +VL  +       ++ L         +                              D 
Sbjct: 4   TLVLVDDHPIVREGLATLLHSVPGYQVVAQAGNERD--------------------GLDA 43

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +  + D  V      D +    +      Y                             
Sbjct: 44  VRTHRPDIAVIDLMLGDTLALRLIETIAHTYPDTAVVCISM---HSDAAYAEPAALAGAL 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y +       I   +  +         +    +   A                   L+ 
Sbjct: 101 GYVNKANVSRTILDAIDSVLRGVPYFPPEVQQNLLRRAR------GQAAKPTTPLAALSP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           RE+E L  I EG T  +IA  +G S NTV  +  +I RK      +  I +
Sbjct: 155 REIEILRMIGEGLTKQQIAERIGHSANTVEAHRTNIKRKLGLDNNAELIRF 205


>gi|37679701|ref|NP_934310.1| putative response regulator [Vibrio vulnificus YJ016]
 gi|320156547|ref|YP_004188926.1| putative response regulator [Vibrio vulnificus MO6-24/O]
 gi|37198446|dbj|BAC94281.1| putative response regulator [Vibrio vulnificus YJ016]
 gi|319931859|gb|ADV86723.1| putative response regulator [Vibrio vulnificus MO6-24/O]
          Length = 211

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 46/114 (40%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +      +  +   + ++        R+ +                     G  +EL+G
Sbjct: 98  GFLEAEKTLENLHKAIRMVASGQLWFSREAMSYALRNIVRTQATSSCSVDVVGSKYELSG 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +E +   ++ +G ++ EI+  L +S +TV ++++ I+ KT  ++RS      + 
Sbjct: 158 KEQKVFLYLLQGYSNKEISEQLNVSLSTVKSHVSHILCKTGKQSRSQLATLMIE 211


>gi|317476127|ref|ZP_07935379.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907765|gb|EFV29467.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 255

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE+E L  + +G  S EIA  L IS NTVN++  +I++K      + AI +A R
Sbjct: 189 NEPLTNRELEVLRLMKQGLLSKEIADTLQISINTVNSHRQNILQKLKANNSAEAINFAQR 248

Query: 243 N 243
            
Sbjct: 249 L 249


>gi|113954975|ref|YP_729804.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113882326|gb|ABI47284.1| possible DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 262

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 13/129 (10%)

Query: 121 TPPAGMDNRYCSLTF---DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                  +    ++            L      G    R  L               +  
Sbjct: 140 EAMEAGADGVMFVSSMGTGDGDFINALRTTNNGGIYYPRAVLEAAT----------ANVK 189

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE+E +  I  G  + EIA  L +S  TV +++++++ K   + R+ A 
Sbjct: 190 PAPILVDPLSERELEVIQCIICGMKNTEIADSLLVSAETVKSHVSTVIHKLGVRDRTQAA 249

Query: 238 AYAVRNNIV 246
            +A+ + +V
Sbjct: 250 VFALTHGLV 258


>gi|313677708|ref|YP_004055704.1| ATP-dependent transcriptional regulator, malt-like, luxr family
           [Marivirga tractuosa DSM 4126]
 gi|312944406|gb|ADR23596.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Marivirga tractuosa DSM 4126]
          Length = 548

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           D  L+ RE+E LT+     T+ EIA  + +S NTV  ++ +I  K     R   I +A+
Sbjct: 483 DNPLSTREIEVLTYALSDLTNQEIADKVFVSVNTVKFHLKNIYEKLGVSNRKEVIKFAL 541


>gi|218258047|ref|ZP_03474480.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225811|gb|EEC98461.1| hypothetical protein PRABACTJOHN_00133 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 171 NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                 +        L+ RE E +  + +G T+ EIA  L +S +TV  +  +I RK   
Sbjct: 120 EEVPPEEGESDDQQTLSSREKEIVVCVVKGMTNREIADRLYLSTHTVITHRRNIARKLQV 179

Query: 231 KTRSGAIAYAVRNNIV 246
            + SG   YA+ N ++
Sbjct: 180 HSASGLTVYAIVNKLI 195


>gi|170744164|ref|YP_001772819.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168198438|gb|ACA20385.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 210

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 69/237 (29%), Gaps = 33/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            + +  +D+     V  L   +   AR+            +  L E              
Sbjct: 6   AVHVVDDDDAMRDSVGFLLDTAGYTARLYEAAEP--LLDALPGLAE-------------- 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  +      + +R +  +              +       +P  +       +
Sbjct: 50  -GCILTDIRMPGIDGIEFLRRVRAAGSP--------LPVIVMTGHGDVPLAVEAMKLGAS 100

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +    FD   +   +     +        L           +  +  +        L+G
Sbjct: 101 DFIEKPFDDETLLRAVRGALAR-PAPATAPLPGADPADPALRDFTRRVE-------TLSG 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + LT +  G T+ EI   L IS  TV  Y A +M KT   + S  + +AVR  +
Sbjct: 153 RERQVLTHLVAGGTAKEIGRALAISPRTVEIYRAKVMAKTQATSLSELVRWAVRAGL 209


>gi|83593935|ref|YP_427687.1| two component LuxR family transcriptional regulator [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576849|gb|ABC23400.1| two component transcriptional regulator, LuxR family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 226

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 19/232 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R           + L  ++     +   +      EY      L           +D  
Sbjct: 1   MRVLLADDHSIIRNALKFILQ---DLEAEVTFEEAREYPSLEDRLAAEGPPLDMVVMDLQ 57

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +        +R +          V          +   + +           +   + D 
Sbjct: 58  MPGYEGLAQIRRIVERAAPTPIAVF--------SMMEAVEDMRAVLRQGVRAFIPKSTDE 109

Query: 138 ARIRIGLMLLFPKGRIILRDR-----LWEIGLLAAYQANMFKSYDVHWG---KDFELTGR 189
           A I   L L+   G  +               L    A   ++    +    +  +LT R
Sbjct: 110 ALIGTLLKLVAGGGTYVPAQVSGISDCRFPPPLKVVLATDIRTIGEDFDDNPRLSDLTRR 169

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           + E L  +S+G ++ EI   LG++ +TV  ++  I++      R+ A+  A 
Sbjct: 170 QREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMAR 221


>gi|94312914|ref|YP_586123.1| two component LuxR family transcriptional regulator [Cupriavidus
           metallidurans CH34]
 gi|93356766|gb|ABF10854.1| two component transcriptional regulator, LuxR family [Cupriavidus
           metallidurans CH34]
          Length = 217

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 64/241 (26%), Gaps = 31/241 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + L  +       +     R+                  +                 +
Sbjct: 6   IRVALADDHPLVVVALRDCLQRTPGFQVTCECTNGSELVDALTQ---------------N 50

Query: 68  LFQEQKLDSIV-SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  D  +   D   D    +    +      +   +    P   +           
Sbjct: 51  PVDVAVTDFSMGHGDTSLDGFNLLRKLHRRHPDTRIVVVSAQTNPGVVSR-----AMKLG 105

Query: 127 DNRYCSLTFDVARIRIGLMLLF-PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
              + S   ++  I    + +    G          +            +         +
Sbjct: 106 ARAFVSKEDELDEIVRACIHVTVSNGHFYSPSIRAVL---------DSATAAATAAPATD 156

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE++ +   ++G    EIA  LG S +T+++     MRK + +T +  I YA  N +
Sbjct: 157 LTLRELDVVRLYAQGFQLTEIANKLGRSVSTISSQKTVAMRKLSVQTNTDLIRYAYENGL 216

Query: 246 V 246
           +
Sbjct: 217 I 217


>gi|330947744|gb|EGH48203.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 120

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
             LL    A    S +   G D  L+ RE+  L  I++G ++ EI+  L IS +TV  + 
Sbjct: 36  AALLEKLPACCTPSPEPAHGGDC-LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHA 94

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
           + I  K   + R+ A+A A    ++
Sbjct: 95  SHINSKLGVERRTQAVARAKTLGLL 119


>gi|221135484|ref|ZP_03561787.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Glaciecola sp. HTCC2999]
          Length = 216

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 32/239 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + +++  +       +    + S    R++      S    +                 +
Sbjct: 2   ITLLIADDHPLYRDALRGALSVSLQDIRLLEAGDLPSTIEILEK---------------E 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-M 126
                 LD  +      DL   + + +      V               P  I+   G  
Sbjct: 47  DVDLLLLDLHMPGSN--DLFGLLHVLKLYSDLPVAVVSGT-------EDPMIISKIVGCG 97

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   T     I   +  +      +           +     + +++         L
Sbjct: 98  ALGFIPKTAGANDIAKAIKSILDGNVWLPESV-------SDKIEEVDEAFSKLADNVASL 150

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T  + + L ++ +G  + +I   L I+  TV  ++ +I RK     R+ A+  A +  +
Sbjct: 151 TPSQYKVLCYMRDGLLNKQIGYNLDIAEATVKAHVTAIFRKLGINNRTQAVLIASQLEL 209


>gi|304321036|ref|YP_003854679.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303299938|gb|ADM09537.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 200

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 25/208 (12%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVRCMA 91
           +  +D        + AL E                D   ++ +D  V       L     
Sbjct: 4   IAIIDDDQGLRRALVALLEGSNRELVSYESGEAFLDEVADRTIDLAVLDLRLPGLSGIKV 63

Query: 92  LSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
           L         V+             +   +         +    F    +   +      
Sbjct: 64  LERLRPLSFPVV------MMSANGDIRTAVDAIKLGATDFIEKPFTPEDLESLI------ 111

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
            R++  + L +   LA    +        W +   LT RE E    ++EG T+ E+A  L
Sbjct: 112 DRVLGDEELRDGTDLAPMPED--------WPQLDALTPREREVALALNEGLTNKEVARRL 163

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIA 238
           G S  T+  + A +  K      +G + 
Sbjct: 164 GCSPRTIEVHRARVFHKLGVSNIAGLVR 191


>gi|319941648|ref|ZP_08015972.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804878|gb|EFW01732.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis
           3_1_45B]
          Length = 207

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           + F    +       LD  + +    +L   +          ++      F      +  
Sbjct: 42  TFFSANDFRRPGCILLDVRMPNMSGLELQNKLKEIG--CDLPIV------FVSGHADIDM 93

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
            +         +       +R+   +     + +        +   +A ++A        
Sbjct: 94  AVNAVKNGAFDFLEKPAKESRLIDVIEAAVARNK----ANRRDQAEVADFKA-------- 141

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +  +LT RE E +  +++G ++ E+A   GIS  TV  +  S  RK      +    
Sbjct: 142 ---RLEQLTQREREVIRMVAQGYSNKEVAAEFGISEKTVQVHRGSAYRKLELHNAAEIAR 198

Query: 239 YAVRNN 244
             + + 
Sbjct: 199 LLLLSG 204


>gi|268591888|ref|ZP_06126109.1| positive transcription regulator EvgA [Providencia rettgeri DSM
           1131]
 gi|291312862|gb|EFE53315.1| positive transcription regulator EvgA [Providencia rettgeri DSM
           1131]
          Length = 208

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 71/237 (29%), Gaps = 32/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       V  L  + D+       D   +                  L +   
Sbjct: 3   TVLIVDDHPVARLAVRILLEKDDMTIVGETADGHEAIQ----------------LAKTLS 46

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + S    D+++ +  +       VL                     +   +
Sbjct: 47  PDLIMIDIDIPSLNGIDVMQRLRKNNYTGGLLVL--------SAKDDDHYIRRCASVGAS 98

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   ++  + + +  +         +        + +  +          K  EL+ 
Sbjct: 99  GFISKRNNLTELHVAIHAIRNGYGYFPLNLNKMDASPSNHLNDK--------QKIAELST 150

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E++ L  +++G  S  IA  + IS  TV+ Y   +M K      +    +  RNN+
Sbjct: 151 KELQVLHLLAKGMKSINIAQQMRISDKTVSTYKRRLMLKLDLHNIAELYDFIQRNNL 207


>gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
 gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
          Length = 320

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 23/220 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LAR+           +   + +    +   L        Q   + + 
Sbjct: 114 VDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATEVAIIALDIQGEMAWQTDKATLF 173

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +            +  +  +  +   + +        +N            S T+  + 
Sbjct: 174 LN------------QYLQDQSGFKLGLKQWFADIKKDKDNKKR--------MSCTYSTST 213

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            ++ L+LL P    +      +  L+    ++   S +       +LT RE E   W++ 
Sbjct: 214 QQLQLILLTPWQDDLS---TTKNYLVQIKISSTALSIEDILKYCPQLTQREAEVSHWLAL 270

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GKT+ +IA IL +S  TVN ++  I  K   + R+ A+AY
Sbjct: 271 GKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVAY 310


>gi|323496086|ref|ZP_08101146.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318830|gb|EGA71781.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM
           21326]
          Length = 214

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 6/163 (3%)

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV-ARI 140
              D      ++ K +   +  +  E       +             +      +    I
Sbjct: 54  LMVDYRDYTRINNKIRQLPLTNKVFENIIINVESRLTTDEVLHFGHLKGLFYDHEPIDEI 113

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
             G   +      + R    ++     Y                +LT RE+  L  +  G
Sbjct: 114 SKGCSEIINGENWLPRKVAAQL----LYHYRNIVEVQSTPAT-VDLTTREIHILRSLMTG 168

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            ++ +IA    IS  TV +++  I +K   K R  A A+A +N
Sbjct: 169 ASNSQIAEEQFISEFTVKSHLYQIFKKLCVKNRVQASAWARQN 211


>gi|323345346|ref|ZP_08085569.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323093460|gb|EFZ36038.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 203

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 153 IILRDRLWEIGLLAAYQA-------NMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
           +     +  + +L  Y            K       +   LTGRE+E L+ I +G  + E
Sbjct: 98  VPEEQLVRSVLMLVQYAHVGGKRLPAEPKKMQEKMLRTKILTGREIEVLSLIVQGFINKE 157

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA  L IS  TV  +  +IM K   K+ S    YAV +  V
Sbjct: 158 IAGRLNISITTVITHRKNIMEKLGMKSVSALTIYAVMHGYV 198


>gi|298113037|gb|ADI58626.1| AsuR1 [Streptomyces nodosus subsp. asukaensis]
          Length = 216

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 3/112 (2%)

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                    +  +      +          +                    LT RE++ L
Sbjct: 86  LTPRVFGDAVSDVMAGKFYVSTALARR---VLRQNGQPATETQPWGTPGTGLTPRELQVL 142

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             ++EG ++ + A  L IS + V   + +++ K     R+ A+  A+   ++
Sbjct: 143 RLVAEGLSNKQAARRLQISEHGVKRLVGNVLAKLNCPNRTLAVVRALEYGLL 194


>gi|257064489|ref|YP_003144161.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792142|gb|ACV22812.1| response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 258

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
            P  +   +  L     R                  +        +       + +    
Sbjct: 147 APRALSRGWRLLDGQRDRRIAS----------DSPAKRRMTQERYSRIV--KSTIEPAKP 194

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           K   LT RE E L  I++G+++ EIA I+GIS  TV  +++ I  K    +R+  IA   
Sbjct: 195 KGDALTPREQEVLVHITDGRSNAEIARIMGISEATVKKHVSHIFDKYNVFSRTELIARVR 254

Query: 242 RN 243
             
Sbjct: 255 ER 256


>gi|153836383|ref|ZP_01989050.1| response regulator VbsA [Vibrio parahaemolyticus AQ3810]
 gi|149750285|gb|EDM61030.1| response regulator VbsA [Vibrio parahaemolyticus AQ3810]
          Length = 195

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 40/233 (17%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++  +       +  L     +   +       S    +                  
Sbjct: 1   MNCLIFDDHPLVCVAIKSLLKELGMTNEVFTATSAKSAFKTLKE---------------S 45

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  ++    FD  + +     +           +F     +   +        
Sbjct: 46  NIELLILDVNLADCDGFDFYKRIKSHGYE--------GKVIFFSAETSQMYSQMAFRSGA 97

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y   + +   ++  +  +                    Y    FK       +  +L+
Sbjct: 98  DGYVCKSENHDILKDAIEAVVKG-----------------YTFFKFKQVANEVREMPQLS 140

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            RE   + ++ +GK++ +IA +L IS  TV+ Y   ++ K   K        A
Sbjct: 141 SRESAVMKYLLQGKSNRDIASVLSISDKTVSTYKRRVLDKFNVKNIVELTRVA 193


>gi|255692220|ref|ZP_05415895.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
 gi|260622084|gb|EEX44955.1| transcriptional regulator [Bacteroides finegoldii DSM 17565]
          Length = 219

 Score = 86.1 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 16/126 (12%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG---- 181
           M             I   +     K R            +  + +N+  S          
Sbjct: 98  MAFGVVMKDNSKEEIITAIQCAIRKQRY-----------ICNHVSNLLLSGTGSPSVTSS 146

Query: 182 -KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             +  LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA
Sbjct: 147 TDNHLLTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYA 206

Query: 241 VRNNIV 246
           +R  IV
Sbjct: 207 MRAGIV 212


>gi|313140038|ref|ZP_07802231.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313132548|gb|EFR50165.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 225

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKY 98
           +D        +  +    G +  L    D     +       + P  L+  + +   +  
Sbjct: 1   MDDDPIVCQSLETILTATGTADVLWSANDGGAAIRRHFESPENHPDILLIDIQMPGMNGL 60

Query: 99  YNVLQRP------TELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
               +          LF   F                Y     DVA I   L  +     
Sbjct: 61  DAAREILTKDPAARILFLTTFSDQAYIEQAMRLGTKGYLIK-QDVAAIAPALHAVMAGQV 119

Query: 153 IILRDRLWEI-------GLLAAYQANMFKSYDVHWGKDFE------LTGREVECLTWISE 199
           ++  D + ++       G      A+      +  G+         L  RE +    ++E
Sbjct: 120 VLGADVIGKLTGPTAGAGYKGPDDASDTAGDGIPHGRRTSDGIDQLLNERERDIAALVAE 179

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           G  + +IA  L +S  TV N I++++ K A   R+    
Sbjct: 180 GLDNRDIAARLYLSEGTVRNRISAMLDKLALTNRTQLAI 218


>gi|298250029|ref|ZP_06973833.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
 gi|297548033|gb|EFH81900.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
           44963]
          Length = 855

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
                  L  +    A         D       +L+ RE+E L  +S+G ++ +IA  L 
Sbjct: 761 AYAEGQNLPLVEAFTARHRGQPVPQDSPMAHSTDLSQRELEVLHLLSQGLSNKQIAAQLV 820

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           IS  TV+ ++ SI  K A  +R+    YA+ +++
Sbjct: 821 ISPRTVDAHVRSIYNKLALNSRAAVARYALEHHL 854


>gi|284047067|ref|YP_003397407.1| LuxR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951288|gb|ADB54032.1| two component transcriptional regulator, LuxR family [Conexibacter
           woesei DSM 14684]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 60/223 (26%), Gaps = 26/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D       L   +     +  + +   G     L          LD  +     
Sbjct: 3   RLLLADDEDLIREALATLLELEPDLVVVAQAGDGERAVALAAEHAPDLVVLDLEMPVFDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            +  R +    +     + +                    A     +   T    R+   
Sbjct: 63  VEAARRILSRRQVPVVLLTRHARPGVL---------RRALASGVRGFVPKTTPADRLARI 113

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +   GR +  +                            LT RE+E L  + EG ++
Sbjct: 114 LRDVHAGGRYVDSEIAA----------------TALTEDACPLTERELEVLRLVREGLSA 157

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IA    ++  TV NY++S M K A  TR  A   A     +
Sbjct: 158 GAIADAAHLAPGTVRNYLSSAMAKLAAPTRVEAARIAWEEGWI 200


>gi|29830688|ref|NP_825322.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607800|dbj|BAC71857.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 200

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 57/224 (25%), Gaps = 24/224 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  L    + L R             +       G     + R        LD  +    
Sbjct: 1   MRVLLADDEHLIRGALAALLALEEDLLVVAEAATGPEALAMARAHAPDVAVLDLQMPGAD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              +   +           L     L                     +   T    R+  
Sbjct: 61  GVRVSTSLRAE--------LPGCQVLIVTSHGRPGHLKRALEAGVRGFVPKTVSAQRLAE 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R +  +                   D     D  LT RE E L + ++G  
Sbjct: 113 IIRTVHAGNRYVDPELAA----------------DAISAGDSPLTVREAEVLEFAADGAP 156

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EIA    ++  TV NY++S + K   + R  A+  A     V
Sbjct: 157 VAEIAERAALAEGTVRNYLSSAVSKLGAENRHTAVRLARERGWV 200


>gi|114561787|ref|YP_749300.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333080|gb|ABI70462.1| transcriptional regulator, LuxR family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 210

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
             +   S+   +A     +  +                 ++ Y     +       +   
Sbjct: 98  GFHGAISVDDSIAHQIQSIKQVQDGDISFNPKA------VSKYILQRKR-IPSSGNRAKI 150

Query: 186 L---TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           L   T +E + L+ I  G T++E+A  L IS NTV  ++ +I +KT  K R    A+A
Sbjct: 151 LAVTTKKEQQVLSLILHGLTNEEMAKELNISVNTVKMHVQNIYKKTKIKNRGQLFAFA 208


>gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
 gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501]
          Length = 90

 Score = 85.7 bits (211), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
               +     L+GRE++ L  +S G T+ EIA  L IS+ TV+N+I++I+ KT T  R  
Sbjct: 2   TSAKFQNPVSLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVE 61

Query: 236 AIAYAVRNN 244
            + + ++  
Sbjct: 62  LVRWGLQWG 70


>gi|332530777|ref|ZP_08406704.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
 gi|332039764|gb|EGI76163.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
          Length = 208

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R               +         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAESFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      +L   +          ++      F      +P  +
Sbjct: 52  VA--------CLIADIRMDGMTGLELQNRLIEKHSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F+ A++   +  +  +               A    +  +      
Sbjct: 96  DTMKKGAMDFIQKPFNEAQLLDLVERMLDR---------------ARAAFSEHQLAADRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLAKLTTRESQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|320533369|ref|ZP_08034060.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134411|gb|EFW26668.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 166

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  +      +L++ +  S        + +   +    F          A    
Sbjct: 5   PDVILVDLQLPDGTGIELMQELRDS--------VPQALPIVLTSFDDDEALAEALAAGAR 56

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y   T   A I   +  +     ++    +              +    H     +LT 
Sbjct: 57  AYLLKTVHGAEISDVVRAVASGRVLLDERTVT-------------RRRADHDDPTADLTN 103

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            E + L  I +G ++ EI   LG++  TV N+I S++ K   + R+   A+
Sbjct: 104 AERKVLDLIGDGLSNREIGERLGVAEKTVKNHITSLLAKMGLQRRTQVAAW 154


>gi|261209256|ref|ZP_05923648.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289566005|ref|ZP_06446443.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|294616191|ref|ZP_06695988.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|260076802|gb|EEW64537.1| regulatory protein [Enterococcus faecium TC 6]
 gi|289162203|gb|EFD10065.1| regulatory protein [Enterococcus faecium D344SRF]
 gi|291590946|gb|EFF22658.1| DNA-binding response regulator [Enterococcus faecium E1636]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 15/185 (8%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
              +L           D  +      D  + +             +   L    F     
Sbjct: 38  DALVLYETHRPDVLLTDIRMPKQTGIDAAKEILAK--------FPKAILLLLATFKDEEY 89

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                +     Y     ++  I   +   +    +       EI            + D 
Sbjct: 90  IREAFSIGVKGYLIK-QNLQAIIPSVKSAYNGQAVFG----NEIIETFTQMMKNKPTIDS 144

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           H    F  + RE+  +  ++ GK + EIA  L +S  TV NYI+ ++ K   + R+    
Sbjct: 145 HAYASF--SERELAIIKEVAAGKNNKEIADALYLSDGTVRNYISQLLEKLDLRDRTQLAI 202

Query: 239 YAVRN 243
           Y  ++
Sbjct: 203 YFYQH 207


>gi|218892730|ref|YP_002441599.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218772958|emb|CAW28770.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 35/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +  +  R    AR+                              + 
Sbjct: 4   RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLAGE--------------GEQ 49

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD         +++  +             R T +   +               +
Sbjct: 50  PDSLILDLRFPGLTRIEMLADLRRR--------FPRTTLIVVSMVDDPQLIGEVMNAGAD 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     +   ++ +     ++  +    + L                     LT 
Sbjct: 102 GFLGKSIAPEELGQAILAIRAGEVLVRYEPSGLLPL-------------QPSPGLEGLTE 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           R+++ L  +++GK++ EI   L IS  TV  +++S++R     +R+ A   
Sbjct: 149 RQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSSLLRALDVPSRTAAAVK 199


>gi|167761739|ref|ZP_02433866.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
 gi|167700375|gb|EDS16954.1| hypothetical protein BACSTE_00077 [Bacteroides stercoris ATCC
           43183]
          Length = 206

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 37/78 (47%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +    +        EL+ RE+E L  I++G  + EIA  L IS  TV  +  +I+ K 
Sbjct: 124 LRSTMPPHAAGNTDAHELSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNIVEKL 183

Query: 229 ATKTRSGAIAYAVRNNIV 246
             K+ SG   YAV +  +
Sbjct: 184 GIKSVSGLTIYAVMHGYI 201


>gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 319

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 69/219 (31%), Gaps = 23/219 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LAR+           +   + +    +   L       +     +  
Sbjct: 114 VDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILAL-------DVHGKIVWK 166

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    DL+              L+         F  L     P       Y + +  +  
Sbjct: 167 TQKANDLLNQYL--------PELEGFEAGLKAWFSDLEHEKDPKKLTSCSYSTPSQQLQL 218

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +                + +  L+    +              +LT RE E + W+  
Sbjct: 219 LLLT--------PWESEPSVAKNYLIQIKTSTPALEMADILKYCPQLTQREAEVMHWLLL 270

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A
Sbjct: 271 GKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309


>gi|295700944|ref|YP_003608837.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440157|gb|ADG19326.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1002]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 66/236 (27%), Gaps = 40/236 (16%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  +D+     +S L    DL                + A         F   + D+ 
Sbjct: 16  VYVVDDDDSMREALSTLLRSVDLP---------------VAAFLSARDFLAFE--KPDVP 58

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               LD  +       +   +A S          R   +F      +   +         
Sbjct: 59  SCLILDVRLKGQSGLAVQEQIATSNL--------RIPIIFMTAHGDIAMTVKAMKAGATD 110

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           + +  F    +   +       + +  D        A+                  LT R
Sbjct: 111 FLAKPFRDQDMLDAV------DQALAADEKRRNTERASSALRRCYES---------LTPR 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           E E +  ++ G  + +IA  +G+S  TV  +    MRK    T +  +  A    I
Sbjct: 156 EREVMALVASGLRNKQIAAEMGLSEITVKIHRGQAMRKMEASTLADFVLKAKALGI 211


>gi|39934390|ref|NP_946666.1| two-component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|39648239|emb|CAE26758.1| two-component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris CGA009]
          Length = 228

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 66/226 (29%), Gaps = 32/226 (14%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIV 78
                 + +  +D        + +L   VG                  D      LD  +
Sbjct: 5   PGGSQQSLICVVDDDEDVRNSISSLLRSVGYRVKTFAGPQDFLASDAVDDASCLILDIRL 64

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +  ++      ++        P+       +         +    FD A
Sbjct: 65  GEADGLEFQQELVAADTPI--PIILISGHGDIPMT------VRAMKAGAVNFLPKPFDEA 116

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  G+     + R    +   +  L   Y +               LT RE E +  ++
Sbjct: 117 TLLAGVREAVSRARQKRSEADRDHSLRMHYAS---------------LTSREREVMGLVT 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            G  + +IA  L +S  TV  +  ++MRK   K+ +  +  A    
Sbjct: 162 AGLMNKQIAWQLSLSEITVKIHRGNMMRKMQAKSLAELVRMADALG 207


>gi|282863505|ref|ZP_06272564.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
 gi|282561840|gb|EFB67383.1| two component transcriptional regulator, LuxR family [Streptomyces
           sp. ACTE]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 57/224 (25%), Gaps = 24/224 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           V  L    + L R             +       G     +          LD  +    
Sbjct: 10  VRVLLADDEHLIRGALAALLALEDDIVLVAEAATGPEALAMALAHRPDVAVLDLEMPGAD 69

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
             ++   +           L     +               A     +   T    R+  
Sbjct: 70  GVNVATSLRTR--------LPDCRTMIVTSHGRPGHLKRALAAGVRAFVPKTVSARRLAE 121

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R +  +                   D     D  LT RE E L   ++G  
Sbjct: 122 IIRTVHAGNRYVDPELAA----------------DAISAGDSPLTAREAEVLELAADGAP 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EIA    +S+ TV NY++S   K   + R  A+  A     V
Sbjct: 166 VAEIAARASLSQGTVRNYLSSAASKLGAENRHAAVRLARERGWV 209


>gi|227358389|ref|ZP_03842729.1| nitrate/nitrite two-component system, response regulator [Proteus
           mirabilis ATCC 29906]
 gi|227161425|gb|EEI46469.1| nitrate/nitrite two-component system, response regulator [Proteus
           mirabilis ATCC 29906]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 60/222 (27%), Gaps = 31/222 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M     +  I+L  +     + V  L +    L  +                    G   
Sbjct: 4   MGAVADKATILLIDDHPMLRNGVKQLLSLDTTLTVVGEAGD---------------GIQG 48

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
             L          LD  +     F+ +  + L        V                + I
Sbjct: 49  VKLAEELDPDLILLDLNMPGMNGFETLDQLRLRSLSGRIVVFSVSNYS--------DDLI 100

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           T      + Y     +   +   L        ++       +           +      
Sbjct: 101 TALKRGADGYLLKDMEPEELLAALKQAAAGKMVVSPTLTPILA-------QSLREDRSEG 153

Query: 181 GKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            +D  +LT RE + L  I++G ++  IA  L I+ +TV  ++
Sbjct: 154 ERDIDQLTPRERDILKLIAQGLSNKMIARKLDITESTVKVHV 195


>gi|149189037|ref|ZP_01867326.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio shilonii AK1]
 gi|148837223|gb|EDL54171.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio shilonii AK1]
          Length = 199

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             +   + Y      V+R+   +  +                           +   H  
Sbjct: 92  AVSAGASGYLDKKESVSRVADAIKAVNSGYTY----------------FRQINTATSHGN 135

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
              +L+ RE   L  + +G T+ EIA  + IS  TV+ Y   I+ K   ++    +
Sbjct: 136 GTIKLSTRESAVLRLLLDGHTNKEIARRMNISEKTVSTYKRRILDKYDVRSVFMLV 191


>gi|146299551|ref|YP_001194142.1| two component LuxR family transcriptional regulator [Flavobacterium
           johnsoniae UW101]
 gi|146153969|gb|ABQ04823.1| two component transcriptional regulator, LuxR family
           [Flavobacterium johnsoniae UW101]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 10/135 (7%)

Query: 113 FHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
                          + Y   T  +  + + ++ +     II       + L+A      
Sbjct: 84  LAEQMYAPNAIKAGVSGYVHKTEKLETLGLSIIKVHEGKIIINETVRKNMALIAKQ---- 139

Query: 173 FKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                    + +  L+ RE+E L ++S+GK ++EI+ IL ++  T++ Y   ++ K    
Sbjct: 140 -----SKSERLYRKLSNREIEVLRYLSDGKKNNEISKILSLNEKTISTYKLRLLTKLNVT 194

Query: 232 TRSGAIAYAVRNNIV 246
                +  A    I+
Sbjct: 195 NLVDLVNKAKTLEII 209


>gi|302327479|gb|ADL26680.1| transcriptional regulator, LuxR family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 450

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                ELT R+ E L+ + +G T+ EI   LGIS NTV  ++A+I +      R  A+
Sbjct: 4   QNTKQELTPRQKEILSLLRKGLTNAEICRTLGISANTVKVHLANIYKILEVTNRIEAV 61


>gi|223043216|ref|ZP_03613263.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|222443427|gb|EEE49525.1| two-component response regulator [Staphylococcus capitis SK14]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 26/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           L    D L     +   +     M  L +   G     L+         LD  +      
Sbjct: 4   LIIAEDQLMLRQAMVQLIEMHEDMKVLNDVENGEEALQLIENKEPDVAILDIEIPGMTGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +++  +     +           +    F          A   + Y      V  +   +
Sbjct: 64  EILAQIRAKGIN--------TRVIIVTTFKRPGYFEKAVANDVDAYVLKERSVEDLVNTI 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    +      +  +                 + +   LT +E   L  I  G +S 
Sbjct: 116 YKVMNGEKEYSTSLMTTL-----------------FSESNPLTHKEQVVLKEIGNGLSSK 158

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           EIA  L +S  TV NY ++I+ K  ++ R  A   A+    +
Sbjct: 159 EIAEKLYLSNGTVRNYTSTIIDKMCSENRFDAWKKAIAKGWI 200


>gi|153839891|ref|ZP_01992558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|260902461|ref|ZP_05910856.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|149746588|gb|EDM57576.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ3810]
 gi|308109572|gb|EFO47112.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AQ4037]
 gi|328471379|gb|EGF42274.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus
           10329]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+
Sbjct: 134 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 193

Query: 240 AVRN 243
           A +N
Sbjct: 194 ADQN 197


>gi|4883696|gb|AAD31608.1|AF065246_2 conjugal transfer regulatory protein [Agrobacterium tumefaciens]
          Length = 234

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 60/206 (29%), Gaps = 17/206 (8%)

Query: 58  ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFH--- 114
           A HF+   +     Q       +++  +        +      V++R             
Sbjct: 29  AEHFVFTGYAYLHIQHRHITAVTNYHREWQSTYFDKKLVALDPVVKRARSRKHIFTWSGE 88

Query: 115 ----------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL 164
                               G+ +                 L   K  I L   +  +  
Sbjct: 89  QERPSLSRDERSFYARAADFGIRSGITIPIRTANGSMSMFTLASDKPVIDLDREIDAVAA 148

Query: 165 LA----AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            +     +    +            L  +E   L WI+ G T +EIA + G+  N+V   
Sbjct: 149 ASTIGQIHARISYLRTTPTAEDAAWLDPKEASYLRWIAVGMTMEEIADVEGVKYNSVRVK 208

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +   M++    +++  IA A+R  ++
Sbjct: 209 LREAMKRFDVHSKAHLIALAIRRKLI 234


>gi|320178120|gb|EFW53098.1| Positive transcription regulator EvgA [Shigella boydii ATCC 9905]
          Length = 204

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 35/238 (14%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N ++        + + +L  ++D+                +  LTE  G S    V   
Sbjct: 1   MNAIIIDNHPLAIAAIRNLLIKNDI--------------EILAELTE--GGSAVQRVETL 44

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++  +   +             +     +             
Sbjct: 45  KPDIVIIDVDIPGVNGIQVLETLRKRQYSGI--------IIIVSAKNDHFYGKHCADAGA 96

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S    +  I   +                 +G L                K   L+
Sbjct: 97  NGFVSKKEGMNNIIAAIEAAKNGYCYFSFSLNRFVGSL-----------TSDQQKLDSLS 145

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +E+  + +I +GK +++IA  + IS  TV+ Y + +M K   K+      +A RN I
Sbjct: 146 KQEISVMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKI 203


>gi|312197505|ref|YP_004017566.1| LuxR family transcriptional regulator [Frankia sp. EuI1c]
 gi|311228841|gb|ADP81696.1| two component transcriptional regulator, LuxR family [Frankia sp.
           EuI1c]
          Length = 213

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 62/237 (26%), Gaps = 25/237 (10%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           +   +    R   V   P   D L  +   D                G     +      
Sbjct: 1   MSRAQAGPIRLLIVDDHPIVRDGLRGVFAGDPDFEVVAEA-----ADGLDAVRVAETVEV 55

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
               +D  +      + +  +                 L    F T  + +         
Sbjct: 56  DVILMDLRMPGTSGVEAITRLRERNHP--------ARVLVLTTFDTDRDVVAAIEAGATG 107

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           Y         +   +        ++       +               V   +   L+ R
Sbjct: 108 YLLKDARRDELIRAVRAADAGQPVLAPSVAGTLM------------GRVGAREPGGLSPR 155

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E++ L  ++ G T+   A  L +S  T+  ++  +  K   + R+ A+A A +  I+
Sbjct: 156 ELDVLRLVAAGATNQAAARALLVSEATIKTHLIHLYNKLGVRDRAAAVAVAYQRGIL 212


>gi|288940382|ref|YP_003442622.1| two component LuxR family transcriptional regulator [Allochromatium
           vinosum DSM 180]
 gi|288895754|gb|ADC61590.1| two component transcriptional regulator, LuxR family
           [Allochromatium vinosum DSM 180]
          Length = 208

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 32/217 (14%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQKLDSIVSSDWPF 84
           A +  +D   +    +  L E  G S       D               LD  +      
Sbjct: 7   AIVFIVDDDQAMRTSLQWLIESTGMSVKTYDSADAFLADYYPGRAGCLLLDVRMPGMSGL 66

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           +L   +A            R   +       +   +         +    F    +   L
Sbjct: 67  ELQAYLAREGF--------RIPVILITGHGDVAMAVRAMKAGAMDFIEKPFHDEDLLRSL 118

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
                    +  D+      LA               +  ELT RE E +  +++GK++ 
Sbjct: 119 RNA------LDHDQKTRANRLARA---------DIAMRLAELTPREHEVMAMVTDGKSNK 163

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           EIA  LG+S  TV  + A +M K   ++ +  +  A+
Sbjct: 164 EIAAALGVSAKTVEAHRARVMEKMRAESLAELVRMAL 200


>gi|228990612|ref|ZP_04150577.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           pseudomycoides DSM 12442]
 gi|228769138|gb|EEM17736.1| Regulatory protein to malT, positive regulator of mal regulon
           (ATPase and HTH-type DNA-binding domain) [Bacillus
           pseudomycoides DSM 12442]
          Length = 55

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           L  ++ G  + EI   L IS +TV  +I +I  K     R  AI  A+ + ++
Sbjct: 2   LIVLATGAINKEIGEKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54


>gi|404833|emb|CAA80427.1| transcriptional activator [Agrobacterium vitis]
          Length = 234

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + ++ G + +  +       Q    I  +++  D        + D    V++R
Sbjct: 21  LKTGLADVADHFGFTGYAYLHI-----QHKHIIAVTNYHHDWRSLYFDKKFDALDPVVKR 75

Query: 105 PTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                                            G+ +                 L   + 
Sbjct: 76  ARSRKQVFAWSGEQERPKLSEEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLASERT 135

Query: 152 RIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            I L   +  +         +    F            L  +E   L WI+ GKT +EIA
Sbjct: 136 AIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAAWLDPKEATYLRWIAVGKTMEEIA 195

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +  N+V   +   M++   ++++   A A+R  ++
Sbjct: 196 DVEEVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234


>gi|115359004|ref|YP_776142.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD]
 gi|115284292|gb|ABI89808.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           AMMD]
          Length = 227

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 29/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++        + V+ +  + D+   +    C         AL      +  +     
Sbjct: 1   MNVLMIDSPPLFVAGVADVLCKRDVNWHVWSARCPEDVLRLRDALLPETVEAITIECDEH 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +    + +  +      +                                I       
Sbjct: 61  AARPSWPNVLHETFAGAPWL-----------CVATAVCRRTIADALLAGAAGIIDRHA-- 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
                           L  +      +  +                        + FE L
Sbjct: 108 --------SADEFADALGRVAAGAIYVPPND-------GGATQARPGGVPAGDDRAFERL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T R+ + L  ++EGK++ +I  +L ++  T+ N++ ++ R+     R+ A  +  R+
Sbjct: 153 TPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRTEAALWLARH 209


>gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13]
          Length = 64

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           LT RE E    + + KT+ EIA  L IS  TV N+I++ M+K   K RS A+   +R  
Sbjct: 2   LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 60


>gi|300788715|ref|YP_003769006.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299798229|gb|ADJ48604.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 201

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 62/222 (27%), Gaps = 25/222 (11%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84
           +    D+      L   +     +  + E   G     + R    Q   +D  +      
Sbjct: 4   VLVAEDMHIVRGALVALLRLEPDIDVVAEVASGPEILPMARARQAQVAVIDIDLPGMDGL 63

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
                +           L     L                     +        ++   +
Sbjct: 64  TAAGELHEQ--------LPECRTLILTSLGRPGTLRRALDAKVGGFLLKDAPPDKLASAV 115

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
             +    R++  D                         D  LT RE++ L  +++G  + 
Sbjct: 116 RGVLAGRRMVDGDLA----------------LAAWDTVDCPLTARELDVLRMVAQGYGTV 159

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+A  L +S  TV NY+ +++ K   + R  AI  A  +  +
Sbjct: 160 EVAARLYLSAGTVRNYLTTVVAKLNARNRVDAIRIAEESGWL 201


>gi|225872131|ref|YP_002753586.1| DNA-binding response regulator FixJ [Acidobacterium capsulatum ATCC
           51196]
 gi|225794198|gb|ACO34288.1| DNA-binding response regulator FixJ [Acidobacterium capsulatum ATCC
           51196]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 30/231 (12%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           + +     V    +  + L  ++  +        +   T   G   F      +     L
Sbjct: 8   QPQSTVFVVDDDLSVRESLELLLRHEGF-----VVETFTSAEGF--FARTSPRMASCVVL 60

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D+ + +A+   D    +L      F      +P  +         + +  
Sbjct: 61  DISLPGLNGLDIQKRLAVERPDM--PIL------FITGHGDIPTTVQAMKAGAVEFLTKP 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
           F  + +   +     +               +          +    +  +LT RE E +
Sbjct: 113 FSDSTLLSAIHAAVER---------------SKKLLARETELNELRSRYADLTPREREVM 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             ++ G  +  +   LGIS  TV  +  S+MRK    + +  I  A R  +
Sbjct: 158 ALVACGFANKAVGSELGISEITVKAHRGSVMRKMKADSLAALIWMAGRLRL 208


>gi|26989384|ref|NP_744809.1| LuxR family two component transcriptional regulator [Pseudomonas
           putida KT2440]
 gi|24984245|gb|AAN68273.1|AE016461_9 DNA-binding response regulator AgmR [Pseudomonas putida KT2440]
          Length = 221

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + + +   +++   +  +      +  D +       + + N   S+     +   
Sbjct: 98  GAVGFITKSSPRSQMIEAIEQILNGNVYLPPDIIRAQKSSTSRRHNDAPSFPPEMLQA-- 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 156 LTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|327481896|gb|AEA85206.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 836

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 6/185 (3%)

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV-LQRPTELFCPVFHTLPENIT 121
           L   D+   Q   +I +     +                 L     +         E   
Sbjct: 657 LAVIDVLDGQPAKAIAALREQIEQNLAAQRLGLACECRFSLAEALHVDGQAVEAEAEVRL 716

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                  ++         +             +L     E       +            
Sbjct: 717 ALGEAARQHLVKP-----LYELAHRQPQWLARVLPAVKGESLRQRLLRYEREPETTQAAT 771

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           ++  L+ RE+  L  I++G ++ EIA  L IS +TV  +   I  K     R+ A+A A 
Sbjct: 772 EETVLSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRINTKLGVARRTQAVAKAK 831

Query: 242 RNNIV 246
               +
Sbjct: 832 ALAWL 836


>gi|269126984|ref|YP_003300354.1| LuxR family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268311942|gb|ACY98316.1| two component transcriptional regulator, LuxR family
           [Thermomonospora curvata DSM 43183]
          Length = 201

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 62/223 (27%), Gaps = 25/223 (11%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTE-YVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D+      +   +     +  + +   G     + R        +D  +     
Sbjct: 3   RVMLAEDMHIVRAAIVALLDLEEDIRVVADVASGDEIMRVARAYRPDVAIIDIDLPVVDG 62

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
               R +           L     L                     +         +   
Sbjct: 63  ITAARMIHQE--------LPETRTLILTSLGRPGTLRKALTAKVGGFIMKDAPPGELTEA 114

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +    R I        G LA    +           +  LT RE+E L   + G   
Sbjct: 115 IRTVAAGRRYID-------GQLALAAWD---------SGECPLTERELEVLRIAASGSGV 158

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L ++  TV NY+AS + K   + R  AI  A  ++ +
Sbjct: 159 EEIAATLFLTTGTVRNYLASAVSKLNARNRIDAIRIAHASDWL 201


>gi|225351360|ref|ZP_03742383.1| hypothetical protein BIFPSEUDO_02954 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157704|gb|EEG70987.1| hypothetical protein BIFPSEUDO_02954 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 233

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 60/233 (25%), Gaps = 13/233 (5%)

Query: 13  NREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQ 72
           + E       +   P    ++ R+I  D +       +A T    A        +     
Sbjct: 10  HDEQPITVGVIDDDPMICQMM-RLILEDYSSGRISVAFACTNA--ADAIEHASHNPPDVV 66

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
             D  +      +  R +                    P                  + S
Sbjct: 67  LADIAMPGMDGIEATRQLR----MLPDPPHVLILTSLSPNNT----VERAIEAGAEGFVS 118

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            T     I   +  +             ++     +Q       D        L  RE E
Sbjct: 119 KTDAPEDIIRRVADVCEGEPQFNPASQRQLIG-DLHQHQPQSRRDEARAMLDALPERERE 177

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            +   +EG T+ EI+  + IS  TV  +I+S   K     R        R ++
Sbjct: 178 AVILAAEGFTNAEISEKMFISERTVKAHISSAADKL-CMGRVQMARLVERADL 229


>gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
 gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 39/62 (62%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT REV+ L  +++G ++  IA +L IS NTV  +I++I+ K    +R+ A++  ++  
Sbjct: 157 PLTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKAG 216

Query: 245 IV 246
           +V
Sbjct: 217 LV 218


>gi|29347818|ref|NP_811321.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298387982|ref|ZP_06997530.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
 gi|29339719|gb|AAO77515.1| luxR family transcriptional regulator [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298259248|gb|EFI02124.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           sp. 1_1_14]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 162 IGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
           +   A +     K        +     L+ RE+E L  I++G  + EIA  L IS  TV 
Sbjct: 108 LHQHAHHNGYPVKDMPPIAMPEVHQEILSAREIEVLVLITKGLINKEIADKLNISLTTVI 167

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +I  K   K+ SG   YAV N  +
Sbjct: 168 THRKNITEKLGIKSVSGLTIYAVMNGYI 195


>gi|154245688|ref|YP_001416646.1| response regulator receiver protein [Xanthobacter autotrophicus
           Py2]
 gi|154159773|gb|ABS66989.1| response regulator receiver protein [Xanthobacter autotrophicus
           Py2]
          Length = 213

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 23/229 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
           + R S V H+    + +   +      +        +        +            D 
Sbjct: 3   DARMSAVIHVIDDDEAVRESLAFLLATAGHTVHTHASARHFLDAGMPAADPSMSCIITDV 62

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +      DL++ +                 +       +P  +         +    FD
Sbjct: 63  RMPDMTGIDLLQHLQEKGST--------VPVIVVTGHGDVPLAVEAMKLGAADFLEKPFD 114

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   +     +                          +    +   L+ RE + L  
Sbjct: 115 DVAILDTVKSALARRE---------------KAYQHDALREQVSERIAALSQRERQVLEC 159

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +  G+ +  IA  LGIS  TV  Y A++M K   ++ S  +  A+   I
Sbjct: 160 LVVGQANKTIAYELGISPRTVEVYRANVMTKMKAQSLSELVRMALLAGI 208


>gi|294646863|ref|ZP_06724484.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294808898|ref|ZP_06767627.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
 gi|292637808|gb|EFF56205.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC
           2a]
 gi|294443940|gb|EFG12678.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 233

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +            D  
Sbjct: 112 MAFGVVMKDNSKEEIMTAIQCATRKQRYICNHVSNLL------LSGASSPLAASSVDDHL 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 166 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|163858244|ref|YP_001632542.1| two component response regulator [Bordetella petrii DSM 12804]
 gi|163261972|emb|CAP44274.1| two component response regulator [Bordetella petrii]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 54/192 (28%), Gaps = 23/192 (11%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           +   T           +        LD  +  +        +A S       ++      
Sbjct: 43  LRVETFQSAQEFLAFPKSQGPSCLVLDVRLRGESGLAFQEQIAKSGLRM--PIV------ 94

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
           F      +   +         + +  F    +   +     +    L        L AA+
Sbjct: 95  FMTGHGDIAMTVKAMKAGAVDFLAKPFRDQDMLDAVANALARDSERLAAEQSIAQLRAAH 154

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
            +               LT RE E +  +  G  + +IA  L +S  TV  +   +M+K 
Sbjct: 155 AS---------------LTPREREVMALVVSGLLNKQIAFELNVSEVTVKIHRGQVMKKM 199

Query: 229 ATKTRSGAIAYA 240
             ++ +  +  A
Sbjct: 200 GARSVADLVRKA 211


>gi|284029639|ref|YP_003379570.1| LuxR family two component transcriptional regulator [Kribbella
           flavida DSM 17836]
 gi|283808932|gb|ADB30771.1| two component transcriptional regulator, LuxR family [Kribbella
           flavida DSM 17836]
          Length = 201

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 59/239 (24%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  ++E     ++ L      L  +                    G       R  
Sbjct: 2   IRVLLADDEEMIRDALAALLGLEQDLDVVARAAD---------------GREAVEAARAH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +      ++   +A         VL     +        P          
Sbjct: 47  RPDVAVVDLQMPELDGLEVTAELAR--------VLPSCAVVILTGRGRPPHLQQALTAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +         +   +  +    R +                      D        LT
Sbjct: 99  KGFLPKGSPGGTLADVIRRVHNGSRYVDPALAA----------------DALTAPPCPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L           IA    +S  TV N++A+ + K    TR+ A   A  N  +
Sbjct: 143 QRELEVLRLAEFDTPVATIARRTSLSPGTVRNHLAAAVGKLDVTTRAEAFRVARDNGWL 201


>gi|212636250|ref|YP_002312775.1| LuxR family DNA-binding response regulator [Shewanella
           piezotolerans WP3]
 gi|212557734|gb|ACJ30188.1| DNA-binding response regulator, LuxR family [Shewanella
           piezotolerans WP3]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 10/113 (8%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   +  V  +   +  +    + +           A          D    K   
Sbjct: 100 GAAGFIPKSTAVEVMVTAIKSVLAGQQWVP----------AGCNNFEAIEADSMTSKIVS 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           L+ R+   L   ++G  + +IA  LG+S  T+  + ++I  K    TR+ A+ 
Sbjct: 150 LSPRQHSILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAVI 202


>gi|269139570|ref|YP_003296271.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|267985231|gb|ACY85060.1| hypothetical protein ETAE_2225 [Edwardsiella tarda EIB202]
 gi|304559458|gb|ADM42122.1| Transcriptional regulator CsgD [Edwardsiella tarda FL6-60]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%)

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
           +  +  +  L            +   +   LT RE+E L  + +G ++ +I+ IL IS N
Sbjct: 120 QALIRRLRTLLVAAQEDEPGEAIPVPRLTRLTLRELEVLKAMQQGASNLDISRILYISEN 179

Query: 216 TVNNYIASIMRKTATKTRSGAIAYA 240
           TV  +I +I +K A K R  A+ +A
Sbjct: 180 TVRTHIYNIFKKIAVKNRIQAVKWA 204


>gi|221134503|ref|ZP_03560808.1| DNA-binding response regulator [Glaciecola sp. HTCC2999]
          Length = 235

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 76/238 (31%), Gaps = 40/238 (16%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +++  +       ++ +       +  I  D   S    +   T+              
Sbjct: 17  KLLIVDDHPIFRQAITGIIADKFTGSSCIEADSIESAKTYISQHTD-------------- 62

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  + S     L   + L  +     V+    E          + +   +    
Sbjct: 63  IDLVLLDLNMPSTSG--LNGLLELRNEYPNLPVVIVSAEN------EKQQILQTISYGAV 114

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE--- 185
            + S +  V  I   L  +F     +  D +           +  K       KDFE   
Sbjct: 115 GFISKSSLVDTITSSLESIFNGNVCLPSDLIR----------SPIKPQSTATNKDFEILP 164

Query: 186 -----LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                LT +E+  L ++++G+ +  IA  + IS  TV ++++SI++K     R   + 
Sbjct: 165 EKMQLLTRKELMVLKYLTQGEANKYIAYEMNISETTVKSHVSSILKKLGASNRVKVVV 222


>gi|300727173|ref|ZP_07060591.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299775559|gb|EFI72151.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 199

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            +             +   L+ RE+E L+ +++G  + EIA  L I   TV  +  +I  
Sbjct: 115 GHAGGKNLPKMPKVLRKQLLSDREIEVLSLVAQGHINKEIAEKLNIGLTTVITHRKNIQE 174

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ S    YAV +  V
Sbjct: 175 KLGMKSVSALTIYAVMHGYV 194


>gi|325981902|ref|YP_004294304.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
 gi|325531421|gb|ADZ26142.1| two component transcriptional regulator, LuxR family [Nitrosomonas
           sp. AL212]
          Length = 388

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 74/248 (29%), Gaps = 35/248 (14%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLP-TRSDLLARMIPLDCTVSWTMRMYALTEYVGASHF 61
           F +Q + ++L  + +     +  L  ++   +  +            +            
Sbjct: 154 FAVQSIKVLLVDDQQIVLWGLEKLINSKQPRMVVIGTASNISDAKRLV------------ 201

Query: 62  LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENIT 121
                    E++ D ++ + +    +  +                     +F    +   
Sbjct: 202 --------IEKRPDILILNTY----LNDIDCVNYI---PDFSNNGNTRVVIFTDTHDKEV 246

Query: 122 PPAG---MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                                +   +  +      + R     I L  +   + F   D 
Sbjct: 247 IDRAVLSGARGVVHRKESTQTMLRAIEKIHDGELWLDRITTGRILLHNSRIRSKFSP-DT 305

Query: 179 HWGKDFELTGREVECLTWISEG---KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
           +  K   LT +E   L   S+G   + + +IA  L +S +T+ N++ SI  K   K R  
Sbjct: 306 NTNKITMLTRKECTILRAFSDGTGGEQNKQIAAKLCMSEHTLRNHLTSIFSKLGIKNRFS 365

Query: 236 AIAYAVRN 243
             AYA ++
Sbjct: 366 LFAYAKQH 373


>gi|16080219|ref|NP_391046.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311111|ref|ZP_03592958.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315438|ref|ZP_03597243.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320354|ref|ZP_03601648.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324638|ref|ZP_03605932.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|296330772|ref|ZP_06873248.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675755|ref|YP_003867427.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321312713|ref|YP_004205000.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|116903|sp|P14204|CMPA_BACSU RecName: Full=Transcriptional regulatory protein ComA; AltName:
           Full=Competence protein A
 gi|142701|gb|AAA22320.1| A competence protein 1 [Bacillus subtilis]
 gi|1934772|emb|CAB07904.1| comAA [Bacillus subtilis subsp. subtilis str. 168]
 gi|2635663|emb|CAB15156.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|10119872|dbj|BAB13494.1| ComA respons regulator [Bacillus subtilis]
 gi|291485617|dbj|BAI86692.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
 gi|296152086|gb|EFG92959.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413999|gb|ADM39118.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|320018987|gb|ADV93973.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
                +    +              +   S T    +I   +  +     ++      ++
Sbjct: 76  PHCKIIVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQL 135

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
                      K       +   LT RE   L  + +G T+ EIA  L +S+ ++   + 
Sbjct: 136 MT-----QQKTKPAPSSQKEQDVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLT 190

Query: 223 SIMRKTATKTRSGAIAYAVRNNIV 246
           SI  K    +R+ A+  A  + ++
Sbjct: 191 SIFNKLNVGSRTEAVLIAKSDGVL 214


>gi|288927298|ref|ZP_06421145.1| transcriptional regulator [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330132|gb|EFC68716.1| transcriptional regulator [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 210

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
           +    +   +G           +  IR  L                 + +       + +
Sbjct: 84  SDFVRVAVASGPRFGIILKDAPLPLIRQALHDALRGEPY---HYAPLVQMADEQWQEVER 140

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     +LT  E+E L  I+ G T+ EIA     S +TVN +  +I RK       
Sbjct: 141 ---------VKLTKTEMEVLRDIALGLTTKEIAEKRFSSFHTVNTHRKNIFRKLNVNNVH 191

Query: 235 GAIAYAVRNNIV 246
            A  YA+R  +V
Sbjct: 192 EATKYALRAGMV 203


>gi|227548275|ref|ZP_03978324.1| LuxR family response regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079593|gb|EEI17556.1| LuxR family response regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 207

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 56/223 (25%), Gaps = 29/223 (13%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R   +         L  +      +       A     GA    L R         D+
Sbjct: 5   PIRALLIDDHEMLLRGLRLIFDTIDGIDIVAATTA-----GAEALTLAREHRVDIIITDA 59

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
            +       +V+  A                L    F          +     Y      
Sbjct: 60  AMPGVDGLGVVKQCA-----------PEFPVLVLTTFDDASLVSALLSAGAAGYILKDVA 108

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
             +    +      G ++                      +    +   LT  E      
Sbjct: 109 PEQFARAIADAAAGGLVLDPRIARFA-------------REAPTNELAILTRAERGVAKL 155

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           I++GKT+ EIA  L ++  TV N+++ I+ K   + R+     
Sbjct: 156 IAQGKTNQEIAAQLHLAEGTVKNHVSRILGKVGARDRTLLALR 198


>gi|209516356|ref|ZP_03265213.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
 gi|209503292|gb|EEA03291.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. H160]
          Length = 225

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 58/216 (26%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR---------WDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  L E VG +                +      LD  +  +   +    
Sbjct: 25  VDDEDAVRRGLSGLLESVGLTVETFASSQDFMASPKQNAPSCLILDIRLRGENGLEFQDA 84

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           M          V+      F      +  ++         + +  F    +   +     
Sbjct: 85  MGRIGLRI--PVV------FVTGHGDIEMSVKAMKAGAMDFLTKPFREQDVLDAVSRALA 136

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           K R  L                  +S          LT RE E    +  G  + +IA  
Sbjct: 137 KDRERLCAE---------------QSIGSLRATYESLTPREREVAGLVLAGLLNKQIAAE 181

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV  +   +M+K + ++    +       I
Sbjct: 182 MNVSEITVKMHRGQVMKKLSARSVVELVDKLRSLGI 217


>gi|330938306|gb|EGH41953.1| LuxR response regulator receiver [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330976814|gb|EGH76848.1| LuxR response regulator receiver [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 260

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 65/243 (26%), Gaps = 41/243 (16%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSS 80
           D L +++ +D        +    E  G                           D  +  
Sbjct: 4   DPLTKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIERFSADSTIGIVLCDLEMPG 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++V  M ++    +         +         + I         Y     D+  +
Sbjct: 64  MNGIEMVEAMKMTGGKTH-----LFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEEL 118

Query: 141 RIGLML--------------------------LFPKGRIILRDRLWEIGLLAAYQANMFK 174
             G+ L                                    D +      A    +  +
Sbjct: 119 LEGVQLQVQALHERQKNRQQLGLLNEKLQFLAASIDDLYKNLDSVQNNPQPARKARDRQE 178

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 179 RDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 238

Query: 235 GAI 237
              
Sbjct: 239 QLA 241


>gi|332715487|ref|YP_004442953.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325062172|gb|ADY65862.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 492

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 13/234 (5%)

Query: 14  REDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK 73
           R+ E+R      L      ++R+              A     G +   +V     + + 
Sbjct: 262 RQSEERFFKSFRLSPVPAAISRL----DDFVLMEVNDAFLVLCGRNEAEVVGKTASELRL 317

Query: 74  LDSIVSSDWPFDLVRC---MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRY 130
            +   +       ++    +         +       +       + + +     +    
Sbjct: 318 WEDAGARRDLEKRLKDNIPIRDENMRMNLSGGGLAECIVSAERAEINDQLCVIWAI-QDV 376

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
                    +   +  +        R  +  +  L                   +LT RE
Sbjct: 377 TERRRTENELIEAIESVMTDTSWFSRTVVERLAGL-----RQNSRGTTSSASLKDLTERE 431

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            + L+ I +G +  E++  L +S++T+ N+IAS+  K     R+ A+ +A    
Sbjct: 432 EQILSLICDGCSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIWARERG 485


>gi|148553426|ref|YP_001261008.1| regulatory protein LuxR [Sphingomonas wittichii RW1]
 gi|148498616|gb|ABQ66870.1| regulatory protein, LuxR [Sphingomonas wittichii RW1]
          Length = 861

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 74/244 (30%), Gaps = 1/244 (0%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
             + ++ +V+     +  S   H       L  +               L   +  +  L
Sbjct: 618 IGLPRLALVMQILRAELLSLAGHRNQAGAALRAIRVPSNGEDDARWRERLALGIANARLL 677

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
           +      +   L   +  +     +  +          +L   +        TL E +  
Sbjct: 678 IHSRQFRRATVLLDTLEGECERRGIGRLVAKVGLLR-ALLLACSGSPQRAIATLVELLQS 736

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
                 +      ++      L+    +   +  +    +  L+      ++        
Sbjct: 737 AQQPSMQAFIEEGELMARLCSLVAHHSQRHALGPEASRFLAELSERLGQSYEHVIDRDAG 796

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
              L+ RE E L  +++G+++   A  L +S  TV  ++  I RK     R  AIA A +
Sbjct: 797 GSYLSAREREILLSLAQGESNKSTAERLNVSEATVKFHLQRIYRKLGAHNRVKAIAVAQQ 856

Query: 243 NNIV 246
             ++
Sbjct: 857 QGLL 860


>gi|91225640|ref|ZP_01260714.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269967600|ref|ZP_06181651.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
 gi|91189760|gb|EAS76034.1| transcriptional regulator, LuxR family protein [Vibrio
           alginolyticus 12G01]
 gi|269827795|gb|EEZ82078.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B]
          Length = 214

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+
Sbjct: 148 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207

Query: 240 AVRN 243
           A +N
Sbjct: 208 ADQN 211


>gi|71909423|ref|YP_287010.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71849044|gb|AAZ48540.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 208

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 33/214 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVR---------WDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   S    + +L    G +  +               F    LD  +       L   
Sbjct: 15  VDDDASIRESLSSLIRSAGMAVEVFASPLEFLARDKLSDFACIVLDVRMPEMDGLALQER 74

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A           +    +F      +P  +         + +  F+   +   + +   
Sbjct: 75  LAEHA--------REIPIIFITGHGDVPLAVRAMKAGAIDFLNKPFNDTDLLQAISVALS 126

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +     ++R+    L A +                 LT RE + L  +++GK +  IA  
Sbjct: 127 RVSASSQERMEVADLRARF---------------ETLTPREKQILFAVAQGKLNKCIAQD 171

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           L ++ +TV  +  ++M K   K+ +   A A++ 
Sbjct: 172 LDVTESTVKVHRHNVMAKMHIKSVAEL-ALAIQR 204


>gi|10955045|ref|NP_059701.1| hypothetical protein pTi_029 [Agrobacterium tumefaciens]
 gi|6094514|sp|P33905|TRAR_AGRTU RecName: Full=Transcriptional activator protein traR
 gi|3377775|gb|AAC28121.1| traR [Agrobacterium tumefaciens]
 gi|81176493|gb|ABB59515.1| TraR [Agrobacterium tumefaciens]
          Length = 234

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 24/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + H   +   LA +            +  + ++ G + +  +       Q       +++
Sbjct: 1   MQHWLDKLTDLAAIEG--DECILKTGLADIADHFGFTGYAYLHI-----QHRHITAVTNY 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNR 129
                      + +    V++R                           +     G+ + 
Sbjct: 54  HRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSG 113

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLA----AYQANMFKSYDVHWGKDFE 185
                           +   K  I L   +  +   A     +    F            
Sbjct: 114 ITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAW 173

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ GKT +EIA + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|332886331|gb|EGK06575.1| hypothetical protein HMPREF9456_00449 [Dysgonomonas mossii DSM
           22836]
          Length = 218

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 31/242 (12%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           ++Q ++++          +  L   +   + ++  +        + +  E       +++
Sbjct: 1   MEQKDVIIVDRQGITRIGMETLVGETKKASSVLFTESKSELVRLLSSHPEA-----VVIL 55

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
            + L     +D +++  + F  V  +  SE+  Y   L+R T                  
Sbjct: 56  DYTLSDFISVDDLLNVGYRFSHVNWLLFSEELSYD-FLRRLTSTSE-------------- 100

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                    +  +  I I L  +    R I      ++                    D 
Sbjct: 101 --AYSIVLKSSGLDEINIALAHVLRGERFICARVANQLLQ---------AQKAPTDTVDH 149

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT  E E L  I+ G+T+ EIA    +S +T+  +  +I RK        A  YA+R  
Sbjct: 150 ILTSTEKEILKEIAIGRTTKEIAANRNLSFHTIITHRKNIFRKLEVNNVHEATKYAMRAG 209

Query: 245 IV 246
           ++
Sbjct: 210 LI 211


>gi|327194435|gb|EGE61295.1| two-component nodulation response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 208

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPFDLVRC 89
           +D   S    +  L   VG                  D+     LD  +      +    
Sbjct: 8   IDDDASVREGLGDLLRSVGLEALTFASSQEFLDSKGPDVPGCIILDVRLPGRSGLEFQSM 67

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +     +    V+        P+       +         + +       +         
Sbjct: 68  LTSLGIEL--PVIFISAHSDIPIS------VRAMKAGAIEFLTKPLREQELLDAAYA--- 116

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
            G      R  E+ L+A               +   LT RE E +  +  G  + +IA  
Sbjct: 117 -GIERDCARRQEVALIAEL-----------RSRYDSLTPREREIMNLVVAGSVNKQIAAQ 164

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +G+S  TV  +   +M+K   ++    +  A    +
Sbjct: 165 VGLSEVTVKVHRGHVMQKMQARSLVDLVRMADGLGL 200


>gi|319789390|ref|YP_004151023.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
 gi|317113892|gb|ADU96382.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans
           HB-1]
          Length = 193

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM---- 172
            +               T       + L++ FP   +I  D   E+ L            
Sbjct: 49  FDLRALSERGVKHLLVDTGIGEEELLFLVINFPISGVISPDTTKELLLKCFNAVLRGEKW 108

Query: 173 -------FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                    S      K   L+ RE++ L+ + EGKT+ EIA  LGIS  TV  YI  ++
Sbjct: 109 FKRELLNLISGSKGSLKIDSLSDRELKVLSLLVEGKTNKEIARELGISEQTVKYYINQLL 168

Query: 226 RKTATKTRSGAI 237
           +K     R   +
Sbjct: 169 KKANCSNRVNLV 180


>gi|159897476|ref|YP_001543723.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890515|gb|ABX03595.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 799

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                      LT RE E LT I++GK++ EIA+ L +S  TVNN++ +I RK    TRS
Sbjct: 721 RQPTPQTPTPLLTKREHELLTLIAQGKSNSEIALELVLSPFTVNNHLRAIYRKLGVSTRS 780

Query: 235 GAIAYAVRNNIV 246
            A   A    ++
Sbjct: 781 AAAYIARERGLL 792


>gi|327402579|ref|YP_004343417.1| LuxR family two component transcriptional regulator [Fluviicola
           taffensis DSM 16823]
 gi|327318087|gb|AEA42579.1| two component transcriptional regulator, LuxR family [Fluviicola
           taffensis DSM 16823]
          Length = 226

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 28/238 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + I +  +       +S   T    L  +            +                 +
Sbjct: 5   IRIAIADDHTLFRKSLSDALTYEFNLDVVFGASNGAELIYNL---------------ATN 49

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  +     F+ ++ +        Y +++           +LP          
Sbjct: 50  PVDVILLDLRMPVMSGFEALKIIRDK-----YPLIKVIIVSM---HDSLPFVEESFERGA 101

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           N + S   D+  +   + +    G     D   E+        N  K        DF ++
Sbjct: 102 NAHLSKDCDIEDLLDAIRMTHNYGYYFTNDFPKEMI---NKIIN--KKSAPPVLDDFIIS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            RE E +  I   K S EI+  L I+  TV N+   I +K  T +  G + YA+ N I
Sbjct: 157 EREKEIIRQICLEKGSKEISEELQIAERTVQNHRYKISKKIGTSSSVGFLVYALLNGI 214


>gi|309776463|ref|ZP_07671449.1| putative transcriptional regulator, LuxR family
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915854|gb|EFP61608.1| putative transcriptional regulator, LuxR family
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 841

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 38/89 (42%)

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
               L +    A+ +   F        +D  L+ RE+E L  +++G ++  IA  L IS 
Sbjct: 747 TSSLLRDCLKRASEKERAFWRSLDIPLQDPILSERELEVLQELAQGNSNKVIAEHLYISL 806

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            TV  +I +I  K     R  A+ Y   +
Sbjct: 807 ATVKTHILNIYGKLQVTNRVEALNYYREH 835


>gi|265751338|ref|ZP_06087401.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|263238234|gb|EEZ23684.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 197

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWG----KDFELTGREVECLTWISEGKTSDEIAVILGI 212
             + +I  L  Y     K            + EL+ RE+E L  I++G  + EIA  L I
Sbjct: 99  SLIKDIHQLRQYGHQARKQAVDKAMHIEKTEHELSIREIEVLILITKGLINKEIADKLHI 158

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV ++  +I  K   K+ SG   YAV N  +
Sbjct: 159 SLTTVISHRKNITEKLGIKSVSGLTVYAVMNGYI 192


>gi|163802337|ref|ZP_02196231.1| putative response regulator [Vibrio sp. AND4]
 gi|159173866|gb|EDP58680.1| putative response regulator [Vibrio sp. AND4]
          Length = 211

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%)

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
            +  +   L  +        R  L +                 +    F LT RE E   
Sbjct: 103 RLELLPKALHAVSQGDVWFPRPILNKAIYHYQEGNEDPAITADYLSTKFLLTKREREICR 162

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            + +G ++ +IA    +S NT+  + ++++ K    +R   +A A +
Sbjct: 163 LMLQGLSNTQIARQSNVSINTIKTHASNVLHKLNVHSRYELMAMARK 209


>gi|124266004|ref|YP_001020008.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124258779|gb|ABM93773.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 209

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 32/214 (14%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLL---------VRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D   +    + +L    G    +             +      LD  +      DL R 
Sbjct: 13  VDDDHAMREALSSLIRSAGMRVEVFESATTFLKSAWHEAPSCLVLDVRMPEMNGLDLQRH 72

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           ++ S         +    +F      +P  +         +    F    +   +   F 
Sbjct: 73  ISASG--------KHIPVIFISGHGDIPMTVRAIKAGAVEFLPKPFSDQCLLDAIAAAF- 123

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                         ++  +  +     +        LT RE E L  + +G  + ++A  
Sbjct: 124 --------------MVEQHSRSERAEVEQVRESYGTLTAREREVLVGVVKGLRNKQVAFD 169

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           LGI+  TV  +   +M+K + K+    +    R 
Sbjct: 170 LGITEETVKVHRHRLMQKMSAKSLPELVRMVERL 203


>gi|446400|prf||1911406A traR protein
          Length = 233

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 25/241 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + H   +   LA +            +  L E+ G + +  +       Q   +I  +++
Sbjct: 1   MQHWLDKLTDLAAIQG--DECILKDGLADLAEHFGFTGYAYLHI-----QHKHTIAVTNY 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNR 129
             D       +  DK   V++R                                 G+ + 
Sbjct: 54  HRDWRSAYFENNFDKLDPVVKRAKSRKHVFAWSGEQERSRLSKEERAFYAHAADFGIRSG 113

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWGKDFE 185
                           L   +  I L   +        +   +    F            
Sbjct: 114 ITIPIKTANGSMSMFTLASERPAIDLDREIDAAAAAGAVGQLHARISFLQTTPTVEDAAW 173

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +E+A   G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGMTMEEVADE-GVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 232

Query: 246 V 246
           +
Sbjct: 233 I 233


>gi|163846785|ref|YP_001634829.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524601|ref|YP_002569072.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668074|gb|ABY34440.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448480|gb|ACM52746.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 211

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 64/240 (26%), Gaps = 31/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + + +  +       +  L      +  +   D        +  L               
Sbjct: 2   IRVFIVDDHPIVREGLRSLIQHQPDMTLVGEADDGTKVISSITTL--------------- 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 +D  +       ++R            VL          ++     I       
Sbjct: 47  KPDVVVIDLRMPGLDGLGVLRQAQALTPAPSCLVLSS--------YNEPDYVIAAIEAGA 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL-LAAYQANMFKSYDVHWGKDFEL 186
             +         I   +  +     +I  + +  +   +A  Q    +           L
Sbjct: 99  RGFLLKQSAYTAILDAIRAIANGEYVISPNLVGVLFTNVAELQRERLRQALADDESALRL 158

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
                  L  +++G T+ EI  +L +S  TV   I  +++    + R+  +A AVR   +
Sbjct: 159 -------LKALADGATTLEIGAMLHMSEVTVKRRIQDLIKLLGVRNRTQLVAEAVRRGWI 211


>gi|317505003|ref|ZP_07962951.1| transcriptional regulator [Prevotella salivae DSM 15606]
 gi|315663885|gb|EFV03604.1| transcriptional regulator [Prevotella salivae DSM 15606]
          Length = 318

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                  D +L+ RE + +  + +G ++ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 ISPSTTGDDQLSQREKDIIIGVVQGMSNKEIAEHLYISVNTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ N++V
Sbjct: 301 LTIYAIVNHLV 311


>gi|294675445|ref|YP_003576061.1| LuxR family transcriptional regulator [Prevotella ruminicola 23]
 gi|294472990|gb|ADE82379.1| transcriptional regulator, LuxR family [Prevotella ruminicola 23]
          Length = 213

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 11/117 (9%)

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
                  +  +R  L  +    R I +  L  I            S      K   LT  
Sbjct: 101 IVFKDGPMKDVRDALHAVSHHQRFISQRALEVII-----------SQQNDEEKPDILTAT 149

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E E +  I++GKT+ EIA     S +T+  +  +I RK    T    I YA+R  +V
Sbjct: 150 EAEIVKAIAQGKTTKEIAEERFSSIHTITTHRKNIFRKLGINTAHELIKYAIRAGLV 206


>gi|225407940|ref|ZP_03761129.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme
           DSM 15981]
 gi|225042534|gb|EEG52780.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme
           DSM 15981]
          Length = 887

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 64/199 (32%), Gaps = 13/199 (6%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           +          +      ++  ++  +L R +   E       L             L E
Sbjct: 680 TARAYAALGEMESALRYLLLLREFGKNLNRPLDRCEAGAILAALYWTLNQKKEAEAELTE 739

Query: 119 NITPPAGMDNRYCSLTFDVAR-----IRIGLMLLFPKG--RIILRDRLWEIGLLAAYQAN 171
            +         +  +  D        ++  L  +  K     + R  + E+ L A    +
Sbjct: 740 TLEVLQ--PYGFVRVVADEGEAVVPVLKRILSTVGGKEYTGPLTRAYVNEVMLAAHSFGS 797

Query: 172 M----FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
                        G+  +L+ ++   LT +++G  + EI+ + G+S  T+ ++ +   +K
Sbjct: 798 RHKGYLAEAGRETGRPVKLSKQQTRMLTLLAQGYKNAEISEMTGLSIPTIKSHTSLAYKK 857

Query: 228 TATKTRSGAIAYAVRNNIV 246
                   A+  A    ++
Sbjct: 858 LGVNNAMDAVLKAKELGLI 876


>gi|167624793|ref|YP_001675087.1| LuxR family transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354815|gb|ABZ77428.1| transcriptional regulator, LuxR family [Shewanella halifaxensis
           HAW-EB4]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A   +    L F +  +   L  +        R+ + +        A          G 
Sbjct: 94  IALGFSGLIILPFTLEMLPRALRTIVSGQLWFSREAMSQTLKHLVSSAGTTHHSVNILGA 153

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            + L+ RE +    +  GK++ +IA  L +S +TV  +++SI+ KT  ++RS 
Sbjct: 154 KYTLSCREQQVFLHLLHGKSNKDIASQLHLSLSTVKCHVSSILLKTGKRSRSQ 206


>gi|289550890|ref|YP_003471794.1| DNA-binding response regulator, LuxR family [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658392|ref|ZP_07911264.1| LuxR family DNA-binding response regulator [Staphylococcus
           lugdunensis M23590]
 gi|289180422|gb|ADC87667.1| DNA-binding response regulator, LuxR family [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496721|gb|EFU85044.1| LuxR family DNA-binding response regulator [Staphylococcus
           lugdunensis M23590]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 64/239 (26%), Gaps = 40/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +++++  +       +  L   SD +  +                    GAS    ++  
Sbjct: 2   ISVIVAEDQTMLRQAMVQLLNMSDDIKVVEQFGD---------------GASALRYIQKH 46

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             Q   LD  +      +++  +                 +    F          A   
Sbjct: 47  SPQVAILDIEMPEMTGLEVLAKVREGN--------DSTKIIIVTTFKRPGYFEKAVANDV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
           + Y      V  +   +  +    +      +                          LT
Sbjct: 99  DAYVLKERSVDDLIGTIKKVITGEKEYSASLM-----------------TSMISNMNPLT 141

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +E   L  I  G +S EIA  L +S  TV NY ++I+ K     R  A   A     V
Sbjct: 142 HKEQIVLREIGLGLSSKEIANKLYLSDGTVRNYTSAIIDKMEADNRFEAWKKAFEKGWV 200


>gi|222080291|ref|YP_002540155.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221738936|gb|ACM39715.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 230

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + ++ G + +  +       Q       +++  +        + D    V++R
Sbjct: 17  LKTGLADIADHFGFTGYAYLHI-----QHRHITAVTNYHPEWQSVYFDKKFDALDPVVKR 71

Query: 105 PTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                                            G+ +                 L   K 
Sbjct: 72  ARSRKHIFTWSGEHERPTLSKDERAFYAHAADFGIRSGITIPIKTANGSMSMFTLASEKP 131

Query: 152 RIILRDRLWEIGLLA----AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            I L   +  +         +    F            L  +E   L WI+ GKT +EIA
Sbjct: 132 VIDLDREIDAVAAAGTIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIA 191

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + G+  N+V   +   M++   ++++   A A+R  ++
Sbjct: 192 DVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRRLI 230


>gi|329961013|ref|ZP_08299292.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
 gi|328532299|gb|EGF59103.1| transcriptional regulator, LuxR family [Bacteroides fluxus YIT
           12057]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 5/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   L     K R I       +            S      KD  
Sbjct: 98  MAFGVILKDNSKEEILTALQCTSRKERFICNHASNLL-----LSGRNASSPAHPAIKDNL 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +TVN++  +I RK        A  YA++  I
Sbjct: 153 LTPAERSILKEIALGKTTKEIAADRNLSFHTVNSHRKNIFRKLGVNNAHEATKYAMKAGI 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|297242645|ref|ZP_06926584.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
 gi|296889454|gb|EFH28187.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis AMD]
          Length = 223

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 11/166 (6%)

Query: 74  LDSIVSSDWPFD--LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            D ++   +      ++ +    +     ++        P+       +           
Sbjct: 53  PDVLLIDMYMSGVSGIKILYELRRRYSLPIII--AITSFPIND---YALKASTAGAQGIV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   L  +           + ++       A          G+   LT  E 
Sbjct: 108 GKNH-PETICAMLSSIAHG--TFKPQIIGDLHFDDTTTAFQRLQNKPKNGRLA-LTNHET 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E +   S+G T+ +IA  L +   TV   +  + +K     RS  I
Sbjct: 164 EIIKLCSKGMTNAQIAKRLFVETCTVETILRRVFKKLNVTNRSQLI 209


>gi|313677555|ref|YP_004055551.1| two component transcriptional regulator, luxr family [Marivirga
           tractuosa DSM 4126]
 gi|312944253|gb|ADR23443.1| two component transcriptional regulator, LuxR family [Marivirga
           tractuosa DSM 4126]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 72/246 (29%), Gaps = 33/246 (13%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M  +   + +++  + E   + ++ +  +      +            M           
Sbjct: 1   MIDKPNPIKLIIADDHEILANGMASILAKQADFEMLGTAQNGREVLEMM----------- 49

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                 +      +D  +      +  + +  +          +   L   +F       
Sbjct: 50  ----AINPADVIVMDLNMPVLDGIETTQILKKT--------YPKVKVLILSMFDREGYIQ 97

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + Y         I   +  +        +D + ++ +   +            
Sbjct: 98  NALDIGVDGYVLKNIGEKEIISAIHRILEGKTYFSQDVMEKVAIKMRH----------EP 147

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +L+  E + L ++SEG TS EI+  + ++ N+V +Y   +++K   K  S  I  A
Sbjct: 148 EPGIKLSATERKMLKYLSEGDTSGEISEKMNLATNSVMSYRKLLLQKFEAKNVSHMIKMA 207

Query: 241 VRNNIV 246
                +
Sbjct: 208 YEKGYL 213


>gi|124267317|ref|YP_001021321.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124260092|gb|ABM95086.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 207

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D       + C  S    +           
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDY-----RVKCFDSAESFLSRF-------- 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      +L   +   +      V+      F      +P  +
Sbjct: 48  ----DSREVACLIADIRMDGMSGLELQDRLVERKSPL--PVV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           T        +    F    +   +  +                  A    +  +      
Sbjct: 96  TTMKKGAMDFIEKPFKEEELLSLVERMLDS---------------ARAAFSQHQEAASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLSRLTTREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|331009232|gb|EGH89288.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 220

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +  + +L   +            +                 
Sbjct: 8   PLRVIVADDHPIFLIGLRVVLEQDNLATVVAEACNPDELLQVLAR--------------- 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAG 125
                   D ++  +   D +R +    +D     V+   T     +F ++ +       
Sbjct: 53  HPCDVLVTDFMMPVELQNDGLRLVQRIHRDFPALPVIVVTTLSNAGLFQSMLDLN----- 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S       +   +  +      +       +     Y  +     +       +
Sbjct: 108 -VRGLLSKASLAGELPAAIRGVQRGEFFVADSVRRGLREARQYGPDALLPAE-------K 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S G T  +IA  L  S+ TV+    + MRK      +    Y   + +
Sbjct: 160 LSPRELEVLRLLSAGHTVGQIAAQLNRSKQTVSAQKVAAMRKLGLANDAALFIYLQESGM 219


>gi|330828734|ref|YP_004391686.1| two component LuxR family transcriptional regulator [Aeromonas
           veronii B565]
 gi|328803870|gb|AEB49069.1| Two component transcriptional regulator, LuxR family [Aeromonas
           veronii B565]
          Length = 212

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 62/222 (27%), Gaps = 17/222 (7%)

Query: 26  LPTRSDLLARMIPLDCTVS-WTMRMYALTEYVGASHFL-LVRWDLFQEQKLDSIVSSDWP 83
           +    D    +  +   +   T     + E    S  L L++         D  +  D  
Sbjct: 5   IILADDHPLILTGIRSLIEQITPHCEVVAEAYQVSDLLKLLQQHRCDLLITDFSMPGDTR 64

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  +    +D           +     H      +      +        ++ +   
Sbjct: 65  SDGIVMIQQLRRDY-----PNLPIIVLTQIHNAGILQSLIQLGVSGILLKKAVISELSDA 119

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  +      I       +                H     +LT +E E +  ++ G + 
Sbjct: 120 IRQILSGHSYIGSSAKNLLAEAGL----------GHHTSLIQLTPKESEVVRLLASGMSV 169

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            ++A  L  S  T++    S M +   ++ S    YA  + +
Sbjct: 170 TQVAEYLHRSIKTISTQKKSAMLRLGLQSDSALFDYAKSSGL 211


>gi|289704562|ref|ZP_06500996.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558750|gb|EFD52007.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 202

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 69/242 (28%), Gaps = 40/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  + IVL  +++   + ++ L      +               +  +            
Sbjct: 1   MNDIRIVLADDEKLLRTALATLLEMEGGIRVEEVAADGNEAVEAVRRI------------ 48

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                     D  +        V  +  +       V+         V            
Sbjct: 49  ---DPDMLVTDMEMPGLDGVAAVATLRET--HPDLPVVMLTRHARPGVLRR------ALK 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                + + + +   I   +  +    R I  D                         D 
Sbjct: 98  AGVTGFVTKSAEPEEIADVIRRVNSGQRWIDPDTTARA-----------------ISDDC 140

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE++ L    EG +   IA  L ++  TV NY++S M+KT T TR  A  +A R+ 
Sbjct: 141 PLTDRELDALRATGEGYSVARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARRHE 200

Query: 245 IV 246
            +
Sbjct: 201 WL 202


>gi|156975758|ref|YP_001446665.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116]
 gi|156527352|gb|ABU72438.1| hypothetical protein VIBHAR_03493 [Vibrio harveyi ATCC BAA-1116]
          Length = 213

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 12/171 (7%)

Query: 75  DSIVSSDWPFDLVRCMALSEK-DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           D ++     +D +R +        +            P      EN      +       
Sbjct: 49  DLVLID---YDFMRRLESRGLLPDFDLFGWPLMIHNVP--SESVENELLRWKLLKGILLQ 103

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           +  V+ I   +  +F  G  + R  L  +        N   S      +   LT RE + 
Sbjct: 104 SASVSHISESVEYIFQGGLWLPRVYLETL------INNYRHSNVSMECQHDSLTSRERQI 157

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L  ++ G ++ +IA  L +S +TV ++I  + +K     R  AI     N 
Sbjct: 158 LELLAYGISNQQIASQLFLSESTVKSHIYKLYKKLDVHCRHDAIKIVRMNG 208


>gi|330951813|gb|EGH52073.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7]
          Length = 208

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 18/191 (9%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     +VR  +     LD  +      +++                       P     
Sbjct: 35  GVDAMQMVRECMPDLIILDISIPKLDGLEVLARFNTMGLSSK----ILVLTSQTPN---- 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              I       + Y     D++ +   +  +           L            +    
Sbjct: 87  LFAIRCMQSGASGYVCKQEDLSELLSSVKAVLSGYNYFPSQALTCAVREDGQTHEL---- 142

Query: 177 DVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                + F+L   RE+  L   ++G+++ EIA  + +S  TV+ Y   +M+K  T+T   
Sbjct: 143 -----ELFKLVNDRELMVLQLFAQGRSNKEIAKGMFLSNKTVSTYKTRLMQKLKTRTLVE 197

Query: 236 AIAYAVRNNIV 246
            I  A RN +V
Sbjct: 198 LIEMAKRNALV 208


>gi|298483763|ref|ZP_07001936.1| transcriptional regulator [Bacteroides sp. D22]
 gi|295087553|emb|CBK69076.1| transcriptional regulator [Bacteroides xylanisolvens XB1A]
 gi|298270057|gb|EFI11645.1| transcriptional regulator [Bacteroides sp. D22]
          Length = 233

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +            D  
Sbjct: 112 MAFGVVMKDNSKEEIMTAIQCATRKQRYICNHVSNLL------LSGASSPLAASSVDDHL 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 166 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|291445985|ref|ZP_06585375.1| luxR family two component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|291348932|gb|EFE75836.1| luxR family two component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 200

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 56/224 (25%), Gaps = 24/224 (10%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  L    + L R             +       G     +          LD  +    
Sbjct: 1   MRVLLADDEHLIRGALAALLALEEDLVVVAEAASGPEALAMALAHRPDVAVLDLQMPGAD 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              +   +           L     +               A     +   T    R+  
Sbjct: 61  GVKVATSLRAE--------LPDCRTMIVTSHGRPGHLKRALAAGVRGFVPKTVSARRLAE 112

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +    R +  +                   D     D  LT RE E L   ++G  
Sbjct: 113 IIRTVHAGNRYVDPELAA----------------DAISAGDSPLTAREAEVLELAADGAP 156

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             EIA    +S+ TV NY++S   K   + R  A+  A     V
Sbjct: 157 VAEIAERASLSQGTVRNYLSSAASKIGAENRHTAVRLARERGWV 200


>gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 308

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 67/221 (30%), Gaps = 34/221 (15%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V       ++LAR+                 +  G    +L   D            
Sbjct: 115 VDYVVKPLRLPEVLARLATHVANARAARLAREAVDVAGMGVVVLDGQD-------RIAWR 167

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           S      +     ++      + +   +                     R  +     + 
Sbjct: 168 SPQATRWLEAAFAADAAPAPAMARWLAQAQQAGEGATALEP------GQRLLARPLGASG 221

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   ++LL  +                                  +LT RE E L+WI++
Sbjct: 222 LGETMLLLSVQAAGAEPAAR---------------------LPRVDLTPRETEVLSWIAK 260

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GKT+ +IA ILG+S  TVN ++  I  K   +TR+ A A A
Sbjct: 261 GKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALA 301


>gi|160899416|ref|YP_001564998.1| two component LuxR family transcriptional regulator [Delftia
           acidovorans SPH-1]
 gi|160365000|gb|ABX36613.1| two component transcriptional regulator, LuxR family [Delftia
           acidovorans SPH-1]
          Length = 216

 Score = 85.7 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 65/244 (26%), Gaps = 40/244 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R                         
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRC---------FDSAETFLSRYDPRE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  IA--------CLIVDIRMGGMTGLELQDRLIERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F+   +   +  +                  A       +      
Sbjct: 96  NTMKKGALDFIQKPFNEEELLNLVERMLDH---------------AREAFAGHQQAASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLAKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 VRNN 244
           +   
Sbjct: 201 LGQG 204


>gi|319441943|ref|ZP_07991099.1| putative transcriptional regulator [Corynebacterium variabile DSM
           44702]
          Length = 241

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 67/249 (26%), Gaps = 33/249 (13%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++L  +D    S +           R+       +    +   T+  G +   L+   
Sbjct: 9   IRLLLVDDDPLVMSSL-----------RLYFSTPAAAAIKIVGEATD--GTAALDLLTTV 55

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +       L+R +   E             +           +   +   
Sbjct: 56  EADVIMTDIHMPGMDGVSLLREVRSLEHPPV--------FIAMTALDEDETMLPILSLGG 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGL------------LAAYQANMFKS 175
             Y   +     I   +      G ++       +               A         
Sbjct: 108 AGYILKSSRPEFIIDTVHQALAGGTVVSPQPATRLVQHLPSPDSPVPGDAAPVAVTAAPD 167

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                 +  +L+  E   LT I  G ++ EIA   G S + V   ++S++ K  T++R  
Sbjct: 168 EPGTSSRLAQLSTAEERVLTLICAGLSNSEIARDTGRSASAVKKAVSSLLAKFGTESRIQ 227

Query: 236 AIAYAVRNN 244
               AV   
Sbjct: 228 LAVLAVEAG 236


>gi|116694767|ref|YP_728978.1| LuxR family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529266|emb|CAJ95613.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16]
          Length = 901

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 63/242 (26%), Gaps = 16/242 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
            + V+ L  + +  ++ +           + A           + R       + +   +
Sbjct: 660 RARVATLEGKLETASQALQAADLYGGWEALDATGHANDIDRPSIARC-RLDIARGNIAPA 718

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCP-----VFHTLPENITPPAGMDNRYCSLT 134
                  +      ++      L+                               +    
Sbjct: 719 LSALDAAIDAALARQRYWRLIRLRVLRATALDGMQQRDAALQEMTEALRLASHEGFLRSF 778

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV----------HWGKDF 184
            +       L+  +    +     L       A                        +  
Sbjct: 779 LEEGERVAVLLRAWAGVHLAQAAALGVAEPFVASLLARLTDAGSTKPAAEPPAEPAHQPD 838

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LTGRE+E L  +S G  +  IA  L +S  TV +++  I  K   ++R+ A+A      
Sbjct: 839 PLTGRELEVLRMLSAGYRNRVIAQKLFLSELTVKSHLRRIHAKLGAQSRTEAVALGRARG 898

Query: 245 IV 246
           ++
Sbjct: 899 LI 900


>gi|307731287|ref|YP_003908511.1| LuxR family two component transcriptional regulator [Burkholderia
           sp. CCGE1003]
 gi|307585822|gb|ADN59220.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. CCGE1003]
          Length = 229

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 60/239 (25%), Gaps = 28/239 (11%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V +V+  +             +   +  +     +      +                  
Sbjct: 5   VKVVIADDHPVILFGAEQALLKFPGIQVVARARQSTELIKMLQTTA-------------- 50

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      D +  +    ++           +   +               
Sbjct: 51  -CDVLVTDLAMPGGQFGDGLPLIGYLRRNF-----PNLPIVVLTMLENAALLQRLRELGV 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
               + + D++ I + +  +      +       +        +  +        +  L+
Sbjct: 105 TSVVNKSDDLSHIGLAVQHVSRHLEYLSPSVKASL--------DALRMNAGGRSDEVMLS 156

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E +     G T  EI+  L  S  T++    + MRK      S    YA  N ++
Sbjct: 157 RRELEVVRLFVSGMTIKEISEQLNRSIKTISTQKNTAMRKLGIDRDSELFQYAQSNGLL 215


>gi|262407478|ref|ZP_06084026.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|262354286|gb|EEZ03378.1| transcriptional regulator [Bacteroides sp. 2_1_22]
          Length = 219

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +            D  
Sbjct: 98  MAFGVVMKDNSKEEIMTAIQCATRKQRYICNHVSNLL------LSGASSPLAASSVDDHL 151

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 152 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 211

Query: 246 V 246
           V
Sbjct: 212 V 212


>gi|254452750|ref|ZP_05066187.1| transcriptional regulator, LuxR family [Octadecabacter antarcticus
           238]
 gi|198267156|gb|EDY91426.1| transcriptional regulator, LuxR family [Octadecabacter antarcticus
           238]
          Length = 170

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 16/177 (9%)

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA--------GMDNRY 130
            +  P   V          +  V++        +  +  +   P          G+    
Sbjct: 1   MNALPAPWVDHYTTHRFMLHDPVIRWIYANTGAIRWSAIDLPDPMRVLDQAQTFGLRYGV 60

Query: 131 CSLTFDVAR-IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
               FD  R  +          R   +  +  +      + +              LT  
Sbjct: 61  AVACFDGNREGQRSFGTFARSDREFEQAEIDALHAYVVQRHHAKA-------PPTNLTHA 113

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           E+E L  I EG    +IA  L IS   V   + +   K   +T + A A      ++
Sbjct: 114 ELEALRMIKEGLRLKQIAYSLSISEGAVKQRLKNAKIKLGAQTSAQAAAMVREFGLI 170


>gi|197337503|ref|YP_002158513.1| response regulator [Vibrio fischeri MJ11]
 gi|197314755|gb|ACH64204.1| response regulator [Vibrio fischeri MJ11]
          Length = 221

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%)

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGK 182
            A   +     T+ +  +   +  +        R+ +      AA+  +           
Sbjct: 92  IALGFSGLIDKTYTIEMLPKAIRTVISGQLWFSREAMSLSLKQAAHIGHQSNHSINILAV 151

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
            + LT RE +   ++ +G ++ EIA+ + +S +T+  +++SI+ KT    R   
Sbjct: 152 KYALTVREQQVFLYLLQGSSNKEIAMQMNVSPSTIKCHVSSILLKTGKNGRRQL 205


>gi|83592836|ref|YP_426588.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodospirillum rubrum ATCC 11170]
 gi|83575750|gb|ABC22301.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Rhodospirillum rubrum ATCC 11170]
          Length = 1483

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 65/212 (30%), Gaps = 30/212 (14%)

Query: 39   LDCTVSWTMRMYALTEYVGA--------SHFLLVRWDLFQEQ--KLDSIVSSDWPFDLVR 88
            +D   S    + AL E  G           FL        E    +D+ +      DL+ 
Sbjct: 1280 VDDDASLRDSLRALLEDDGLKVEDYESSEAFLAAYRPGGGEACLLIDAYLPGMSGLDLLE 1339

Query: 89   CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
             +            +    +    +  +   +       + +                + 
Sbjct: 1340 RLKKEN--------RLLPAIVITGYSEVAMAVQAMKAGASDFIEKP------------VG 1379

Query: 149  PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
                +I  DR  E          M    D    +   L+ R+ E +  +  G+ S  IA 
Sbjct: 1380 RTELLISIDRALEQHREHGNSGKMRLWRDAAKARLASLSARQREIMEMVLAGQPSKNIAA 1439

Query: 209  ILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
             LGIS+ TV ++ A IM+K   K+    +  A
Sbjct: 1440 DLGISQRTVESHRALIMKKLGVKSLPALVRLA 1471


>gi|464918|sp|P33909|TRAR_AGRVI RecName: Full=Transcriptional activator protein traR
 gi|404827|emb|CAA80423.1| transcriptionnal activator [Agrobacterium vitis]
 gi|404830|emb|CAA80425.1| transcriptional activator [Agrobacterium vitis]
          Length = 234

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 45  WTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQR 104
               +  + ++ G + +  +       Q    I  +++  D        + D    V++R
Sbjct: 21  LKTGLADVADHFGFTGYAYLHI-----QHKHIIAVTNYHHDWRSLYFDKKFDALDPVVKR 75

Query: 105 PTELFCPVFH-------------TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
                                            G+ +                 L   + 
Sbjct: 76  ARSRKQVFAWSGEQERPKLSEEERAFYAQAADFGIRSGITIPIRTANGSMSMFTLASERT 135

Query: 152 RIILRDRLWEIGLL----AAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIA 207
            I L   +  +         +    F            L  +E   L WI+ GKT +EIA
Sbjct: 136 AIPLDREIDAVAAAAAVGQLHARISFLRITPTAEDAAWLDPKEATYLRWIAVGKTMEEIA 195

Query: 208 VILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  +  N+V   +   M++   ++++   A A++  ++
Sbjct: 196 DVEEVKYNSVRVKLREAMKRFDVRSKAHLTALAIKRKLI 234


>gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 916

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 2/135 (1%)

Query: 114 HTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL-RDRLWEIGLLAAYQANM 172
                 +         + +   +   + I L+    +  +     R  E  L  A    +
Sbjct: 782 AREQMLLAIDLAAPRNFMATFIEEGSVCISLIEGISRQILSACSRRFIERVLEGASIYEI 841

Query: 173 FKSYDVHWGKDFEL-TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
             +    +    EL T RE+E LT + EG ++ EIA  L ++ NTV  ++ ++  K A  
Sbjct: 842 KDNSLAAYSTLIELPTKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVN 901

Query: 232 TRSGAIAYAVRNNIV 246
            R   I  A+   +V
Sbjct: 902 NRVKLITTAIHLGLV 916


>gi|330985058|gb|EGH83161.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 220

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +  + +L   +            +                 
Sbjct: 8   PLRVIVADDHPIFLIGLRVVLEQDNLATVVAEACNPDELLQVLAR--------------- 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAG 125
                   D ++  +   D +R +    +D     V+   T     +F ++ +       
Sbjct: 53  HPCDVLVTDFMMPVELQNDGLRLLQRIHRDFPALPVIVVTTLSNAGLFQSMLDLN----- 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S       +   +  +      +       +     Y  +     +       +
Sbjct: 108 -VRGLLSKASLAGELPAAIRGVQRGEFFVADSVRRVLREARQYGPDALLPAE-------K 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S G T  +IA  L  S+ TV+    + MRK      +    Y   + +
Sbjct: 160 LSPRELEVLRLLSAGHTVGQIAAQLNRSKQTVSAQKVAAMRKLGLANDAALFIYLQESGM 219


>gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
 gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens
           WH6]
          Length = 89

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
             +  +      GK   LT  E+E L W SEGKT  EI+ I   S+ TV  ++ +I  K 
Sbjct: 14  VPSALRRRLSLSGK--PLTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKL 71

Query: 229 ATKTRSGAIAYAVRNNI 245
               R  A+  AVR  +
Sbjct: 72  DVSNRVQAMNEAVRQGL 88


>gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 237

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             LT RE + L  I++G    EIA  L +S  TV N+ A I +K     R+  + YA+R 
Sbjct: 173 ARLTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALVRYALRA 232

Query: 244 NIV 246
           +++
Sbjct: 233 HLI 235


>gi|262401518|ref|ZP_06078085.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
 gi|262352233|gb|EEZ01362.1| transcriptional regulator LuxR family [Vibrio sp. RC586]
          Length = 214

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K
Sbjct: 141 RYAFQTHQTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVK 200

Query: 232 TRSGAIAY 239
            R  AIA+
Sbjct: 201 NRVKAIAW 208


>gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae]
          Length = 277

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 40/73 (54%)

Query: 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           F+  +V      ELT RE E L  I+ G ++ EIA  L +S +TV +++ +++ K   ++
Sbjct: 201 FRRAEVSDVDPDELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRS 260

Query: 233 RSGAIAYAVRNNI 245
           R  A+ YA    +
Sbjct: 261 RVQAVVYAYEIGL 273


>gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 149

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 45/96 (46%)

Query: 151 GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                  ++ ++  L     +   +    +    +L+ REVE L W+++GKT + I  +L
Sbjct: 54  ELDAKEAKMSKLVRLTHACLSEIITLSPPYNPLEKLSTREVEVLKWVADGKTGEVIGKVL 113

Query: 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G++  TV ++  +IM+K     ++ A   A    I+
Sbjct: 114 GVTERTVTHHTVNIMQKLNATNKTAAAVKAALLGII 149


>gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii]
          Length = 71

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
               L+ RE ECL W + GKTS EIAVILG+S  TVN +I +   K     R  A+A A+
Sbjct: 2   PAKPLSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIAL 61

Query: 242 RNNIV 246
              ++
Sbjct: 62  SQGLL 66


>gi|170721339|ref|YP_001749027.1| LuxR family transcriptional regulator [Pseudomonas putida W619]
 gi|169759342|gb|ACA72658.1| transcriptional regulator, LuxR family [Pseudomonas putida W619]
          Length = 491

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +        +  + ++       A    +  +      +LT RE + L  I 
Sbjct: 387 ELVEAIETVMQDASWFSQTLIEKLA-----NAKRINTGRLPDASFTDLTRRERDVLALIC 441

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           EG    EIA  L ++ NTV N++A++  K    +RS AI +A    +
Sbjct: 442 EGLADKEIATRLNLALNTVRNHVATVYSKLDVHSRSEAIVWARERRL 488


>gi|118592487|ref|ZP_01549878.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
 gi|118434834|gb|EAV41484.1| transcriptional regulator, LuxR family protein [Stappia aggregata
           IAM 12614]
          Length = 207

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD- 183
           G+ N    +   +      + ++   G  +  D +  +    + +    ++         
Sbjct: 76  GIINNVIPMNLRLDLWLYAIQIMLQGGSYMPPDLVELLEAGPSMRLEKARNLVDARNSSG 135

Query: 184 ----FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
                 LT RE+E L  I++G  +  IA  L +S +T+  +I  I+ K     R+ A A
Sbjct: 136 ADLISSLTPRELEVLALIAQGHQNKNIAANLSLSEHTIKLHIHHIISKMGVSNRTEAAA 194


>gi|34497778|ref|NP_901993.1| LuxR family transcriptional regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103634|gb|AAQ59995.1| probable transcriptional regulatory protein, LuxR family
           [Chromobacterium violaceum ATCC 12472]
          Length = 224

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 22/209 (10%)

Query: 39  LDCTVSWTMRMYALTEYVGASHF----LLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           +D   +    +  L    G         +   D +Q  ++  +V       +       +
Sbjct: 11  VDDDPAVLDSLAMLITAQGMKTVTFPNAMEFLDGYQGNQICCLVLDIRMPQITGLALQEQ 70

Query: 95  KDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRII 154
             +    +      F      + +           + +   D  R+   L          
Sbjct: 71  LMERNISIPIV---FITGHGDIEQCRRAFQTGAIDFLTKPIDQNRLIASL---------- 117

Query: 155 LRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
                     ++  Q    +       +   ++GRE E L  +++G +S EIA  L +S 
Sbjct: 118 -----RRGIRISIQQHQQEEETQEVMSQLSRISGREREVLELVADGLSSKEIARELDLSP 172

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            T+  + A++  K    + +  + + ++ 
Sbjct: 173 RTIEVHRANLFSKLGVDSLADLVRFYLKA 201


>gi|296158522|ref|ZP_06841352.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295891090|gb|EFG70878.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 213

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 30/237 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +       +     +   +  +I  D                G +   + R   
Sbjct: 3   TILVIDDHPAFRMVIKMQLMQLLGVEEVIEADN---------------GQTAVEMARLHT 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   LD  +      D++  + L        +         P                +
Sbjct: 48  PELAILDLDIPRISGLDVIPRLRLVHP----PIRVMVLSGHDPAT----FAPRAMRSGVH 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   + ++  I  G+  +     +          + AA      +           L+ 
Sbjct: 100 GFVGKSQEMREIMRGVEAVLAGYTVFPVTANGAGIVAAAGAGGEEQRIG-------LLSD 152

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E+  L  +S+G ++  I   L IS  TV+++   IM+K A K+    I  A R  I
Sbjct: 153 KELVILQMLSKGMSNKAIGDALFISNKTVSSHKTRIMQKLAVKSLVELIDLARRCRI 209


>gi|227486353|ref|ZP_03916669.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227235764|gb|EEI85779.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 196

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  LT RE E L  +  GKT+ +IA  L IS  T+ ++I +I  K   + +      A+ 
Sbjct: 130 ENPLTKREEEVLKALITGKTNTQIAKDLYISERTLYHHIENIYEKLKVENKVELYGKALE 189

Query: 243 NNIV 246
              V
Sbjct: 190 LGYV 193


>gi|116748387|ref|YP_845074.1| two component LuxR family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697451|gb|ABK16639.1| two component transcriptional regulator, LuxR family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 214

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 60/216 (27%), Gaps = 32/216 (14%)

Query: 39  LDCTVSWTMRMYALTEYVG---------ASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
           +D  +S    +  L    G                  D      LD  + +    DL   
Sbjct: 11  VDDDLSVRKALDRLLRAAGHGVKTFSSALEFLDYKPVDAPACLVLDIRMPAFNGLDLQDH 70

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +A  E      ++        P+       +         +    F        L+ +  
Sbjct: 71  LAKREDSF--PIVFITGHGTVPMS------VRAMKAGAVDFLQKPFGDTD----LLSVVG 118

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +     R+                K       +   LT RE E    +  G  + +IA  
Sbjct: 119 QAIEKDRESRR-----------HRKEIRDLRQRLATLTPREHEVFAHVVAGMLNKQIAFA 167

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LG    T+  + A +M K   ++ +  + +A +  I
Sbjct: 168 LGTVEKTIKVHRARVMAKMGAESVADLVRFAEKLGI 203


>gi|332994175|gb|AEF04230.1| putative LuxR-family transcriptional regulator [Alteromonas sp.
           SN2]
          Length = 199

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 11/178 (6%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
                         + DSI  S    +    +  +       VL           +  PE
Sbjct: 19  EWIEFSEIPCVSCDENDSIWVSTLHKNWRENIIAASAKCRNVVL-------LTYHYDRPE 71

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
             T        YC        +   +  +  +G I +     E+ +             V
Sbjct: 72  MQTALLLGARGYC-HALSQQSLFESVSRVLKEGGIWVP---NELYVNTTSAVATTLDLKV 127

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
              +   LT RE + LT I EG ++ EIA  L ++  T+  ++ S+++K   K R G 
Sbjct: 128 KIPEIATLTAREKDVLTGILEGLSNKEIARNLKLTERTIKEHVGSLLKKLNAKDRIGL 185


>gi|258652113|ref|YP_003201269.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258555338|gb|ACV78280.1| transcriptional regulator, LuxR family [Nakamurella multipartita
           DSM 44233]
          Length = 230

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 66/206 (32%), Gaps = 9/206 (4%)

Query: 42  TVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
                 +   +++    +   +V  +   E  +  +V+     +++R +   ++      
Sbjct: 33  AGDPISQAGVISQLRQRAEIRVVDAEHLGEAVVAVVVADGLTDEVLRVLRALQRGSIPRT 92

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSL-TFDVARIRIGLMLLFPKGRIILRDRLW 160
           +     +           +                    +   ++ +      +  D L 
Sbjct: 93  VLVARVI------DDSTLVAAAEAGVGGLLRRGDATPDSLARAILRVAAGEGEVPPDLLG 146

Query: 161 EIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            +            +          L+ RE E L  ++ G  + EIA  L  S+ TV N 
Sbjct: 147 RLLGQVGRLQRQVLAPRGLA--FSGLSDREAEVLKLVANGHDTAEIAGRLSYSQRTVKNI 204

Query: 221 IASIMRKTATKTRSGAIAYAVRNNIV 246
           +  +  +   + RS A+AYAVR  ++
Sbjct: 205 LHDVTTRLQLRNRSHAVAYAVREGLI 230


>gi|198275681|ref|ZP_03208212.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
 gi|198271310|gb|EDY95580.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135]
          Length = 202

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E +  +  G T+ EIA  L IS +TV  +  +I RK    + +G   YA+ N +
Sbjct: 133 LSQREKEIVGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKLQIHSAAGLTIYAIVNKL 192

Query: 246 V 246
           V
Sbjct: 193 V 193


>gi|189424630|ref|YP_001951807.1| LuxR family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420889|gb|ACD95287.1| two component transcriptional regulator, LuxR family [Geobacter
           lovleyi SZ]
          Length = 223

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 58/223 (26%), Gaps = 11/223 (4%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           +  +    D       L        RM A T     +       D    Q  D IV    
Sbjct: 11  MKTILIIDDHTMFRQALRSM--LMERMPAGTITCDDAGSAAAARDKLAHQDFDLIVLDIG 68

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
                    L E    Y  L        P        +       + Y +       +  
Sbjct: 69  MLHTNGMELLPELKSCYPALPVLMLSMYP---EEQFALQTLKLGASGYLTKQEAADELLT 125

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +       R             +   + + +           L+ RE+E    ++ G  
Sbjct: 126 AIEKCLAGERY------LSSSFSSLLISQVLQHCKAEELPHTRLSRREMEIFRLLARGYM 179

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
              IA  LG+S  TV+ Y   +  K   K  +  I YAV   +
Sbjct: 180 LKRIANDLGLSIKTVSTYKVRLSAKMGFKDNAALIRYAVAYQL 222


>gi|171057984|ref|YP_001790333.1| two component LuxR family transcriptional regulator [Leptothrix
           cholodnii SP-6]
 gi|170775429|gb|ACB33568.1| two component transcriptional regulator, LuxR family [Leptothrix
           cholodnii SP-6]
          Length = 273

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 47/253 (18%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           ++ +D        M  +   +G  H  +   +   E +   +   D+   L+  +  S  
Sbjct: 3   VLMIDDHPLILAAMQNVVRGLGV-HVRVTGVETPDEARQRLVPPHDFDLILLDLLLGSGD 61

Query: 96  DKYY------NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           D Y               +         + I    G    +         +   L L+  
Sbjct: 62  DGYDFLIELRASHPALPVVVISASERAADVIRCIDGGAMGFVPKRASNEMLFEALHLVMS 121

Query: 150 KGRIILRDRL----------WEIGLLAAYQANMFKSYDVHWGKDFE-------------- 185
            G  +                +  +     A    S      +D                
Sbjct: 122 GGIYVPPMARGLGGPNLPSVPDAQVFPGLPAQGPLSIAAAGPRDRPDGVHAGMSIGPWSS 181

Query: 186 ---------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230
                          LT R+ + L  + EGK +  IA  LG+S  TV +++A+++R    
Sbjct: 182 RGMALPRPASLDALGLTPRQAKVLMLLMEGKANKVIAKELGLSVETVKDHVAAVLRCLGV 241

Query: 231 KTRSGAIAYAVRN 243
           ++R  A+  AVR+
Sbjct: 242 RSRMQAV-IAVRH 253


>gi|172063774|ref|YP_001811425.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996291|gb|ACB67209.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 301

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 63/273 (23%), Gaps = 39/273 (14%)

Query: 13  NREDEQRTSFVSHLPTRS---------DLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +RE   +  +   L              +   +     T      + +L    G S F  
Sbjct: 29  SRERPVQVVWCDDLKRGDITQPHAPKLGVADTLANAQSTAERNRIVASLLHLTGFSTFAY 88

Query: 64  VRWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-- 120
              +  +E+     +   + P                           P+   L +    
Sbjct: 89  FALEFSRERVESLYLHEAFTPNTYRGDYVRHNHHDIDPRTLDARVCNMPIVWDLQQLRRE 148

Query: 121 ---------------------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILR 156
                                    GM +                M           I  
Sbjct: 149 HRERDSGPCVTPAALDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITP 208

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGIS 213
             + +   +            +   ++     LT  E E L  I+EG +  EI   L  S
Sbjct: 209 ATIEQALSIGLSVHKFASPQLIATSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTS 268

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + V+ ++  + ++     R        +  ++
Sbjct: 269 AHNVDYHLRKLRKRFGVANRIQLTYLTSKLELI 301


>gi|16119952|ref|NP_396657.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|1730017|sp|P54294|TRAR_AGRT5 RecName: Full=Transcriptional activator protein traR
 gi|299361|gb|AAB26028.1| TraR=tra gene transcriptional activator [Agrobacterium tumefaciens,
           Ti plasmid pTiC58, Peptide Plasmid, 234 aa]
 gi|3153172|gb|AAC17192.1| TraR [Agrobacterium tumefaciens str. C58]
 gi|15163626|gb|AAK91098.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 234

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 72/241 (29%), Gaps = 24/241 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           + H   +   LA +            +  L E+ G + +  +       Q   +I  +++
Sbjct: 1   MQHWLDKLTDLAAIQG--DECILKDGLADLAEHFGFTGYAYLHI-----QHKHTIAVTNY 53

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFH-------------TLPENITPPAGMDNR 129
             D       +  DK   V++R                                 G+ + 
Sbjct: 54  HRDWRSAYFENNFDKLDPVVKRAKSRKHVFAWSGEQERSRLSKEERAFYAHAADFGIRSG 113

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRL----WEIGLLAAYQANMFKSYDVHWGKDFE 185
                           L   +  I L   +        +   +    F            
Sbjct: 114 ITIPIKTANGSMSMFTLASERPAIDLDREIDAAAAAGAVGQLHARISFLQTTPTVEDAAW 173

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L  +E   L WI+ G T +E+A + G+  N+V   +   M++   ++++   A A+R  +
Sbjct: 174 LDPKEATYLRWIAVGMTMEEVADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233

Query: 246 V 246
           +
Sbjct: 234 I 234


>gi|89068253|ref|ZP_01155663.1| transcriptional regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
 gi|89046170|gb|EAR52228.1| transcriptional regulator, LuxR family protein [Oceanicola
           granulosus HTCC2516]
          Length = 202

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 47/176 (26%), Gaps = 16/176 (9%)

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--------PENITPPAGMDNRYC 131
           +  P + V              ++        +  +                 G+     
Sbjct: 34  NRLPPEWVDHYTAKGLMLADPAMRWIYANTGAIRWSEIALDDPLQVLAQARSFGLRYGLA 93

Query: 132 SLTFDVARI-RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
               D   + +    L     R      +  + L    +                LT  E
Sbjct: 94  VSLHDDTPLGQRSFGLFARADREFDDSEVALLTLYLTRRHEE-------RMPPSNLTAAE 146

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +E L  + +G+   +IA  LG+S   V   + +  RK    T + A   A    ++
Sbjct: 147 LEALRMVKDGQRVKQIAHELGVSEGAVKQRLKNAKRKLNAATSAQAATMATEFGLI 202


>gi|116748029|ref|YP_844716.1| two component LuxR family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697093|gb|ABK16281.1| two component transcriptional regulator, LuxR family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 206

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 59/219 (26%), Gaps = 32/219 (14%)

Query: 36  MIPLDCTVSWTMRMYALTEYVG---------ASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
           +  +D   S    +  L E  G                  +      LD ++      DL
Sbjct: 6   IFIVDDDASHRDSLQFLLESAGLEVRSFSSARDFLDGADPETPGCLLLDVLMPGMSGLDL 65

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
              +          ++        P+       +         +     D   +   +  
Sbjct: 66  QNEL--LNAKISLPIIFITGHGTIPMS------VRAVKSGAVDFLQKPCDEQDLLRAIHR 117

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              + R   R++               +           L+ RE E  T +  G  + ++
Sbjct: 118 AIEQDRRTRREK------------EKLREIHKLIDS---LSPREHEVFTHLVSGMLNKQV 162

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           A  LG +  T+  +   IM K    + +  + YA +  +
Sbjct: 163 AYRLGTTERTIKAHRRRIMEKMKADSMADLVRYAEKLGL 201


>gi|253987949|ref|YP_003039305.1| LuxR family transcriptional regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779399|emb|CAQ82560.1| similar to luxr family transcriptional regulators [Photorhabdus
           asymbiotica]
          Length = 251

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
           ++    A      D      + LT RE E +  I +GK S +IA  L IS  TV N+  +
Sbjct: 168 MMLQAPAAEMVCLDTQIR--YALTPRECEIVELILQGKGSPQIAEKLFISTGTVKNHRKN 225

Query: 224 IMRKTATKTRSGA 236
           I +K   ++++  
Sbjct: 226 IYQKLQIRSQAEL 238


>gi|149187073|ref|ZP_01865379.1| two component system response regulator [Erythrobacter sp. SD-21]
 gi|148829284|gb|EDL47729.1| two component system response regulator [Erythrobacter sp. SD-21]
          Length = 231

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 66/235 (28%), Gaps = 36/235 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           +IV+   D      +  L   S        +         +      +     L+V   L
Sbjct: 5   SIVIADSDALSRIGLKSLLESSGCTESTTEIANFADLAGLL-----PMEEESVLVVDIHL 59

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
              +  D I               S+  + +   +           T    +   A    
Sbjct: 60  AGLEGPDGI---------------SDLMRRHPGTKLC---VLVDVATREVALEYLASGVM 101

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
              + +     I   + ++      +                    +         +LT 
Sbjct: 102 GCMAKSRSAEEIVEAVDVIADGRPYL------------CKLTIEQSADAPRTPPIGKLTR 149

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           R+ + +  ++ GK++ EIA  LGI   TV  ++ +  R      R  A+  A++N
Sbjct: 150 RQRKVMAVMAMGKSNKEIARELGICEGTVKVHVNAAYRALGVHNRVAAVR-ALQN 203


>gi|148239259|ref|YP_001224646.1| two component system response regulator [Synechococcus sp. WH 7803]
 gi|147847798|emb|CAK23349.1| Two component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 66/221 (29%), Gaps = 24/221 (10%)

Query: 30  SDLLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
            D LA +  +      +  +  A TE  G     LV           S + S +  +L+R
Sbjct: 31  GDRLALISFVLVDAIASSLVGAATTEDEGFE---LVLRTQPDLLICSSDLESGYGINLLR 87

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT---FDVARIRIGLM 145
            +          ++         V  T            +     +        +   L 
Sbjct: 88  RVKAELPTCQLLIVL--------VRETQAVVQEAMEAFADGVVFKSSLGAGRGDLIKALR 139

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            L   G                                 ELT RE+E    ++ G  ++ 
Sbjct: 140 TLADGGVYFPEQIRR---------IAASTPQPDLPPLVEELTPRELEVAAGVARGLKNNA 190

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA +LG+S  TV +++ + M K   + R+     A+   ++
Sbjct: 191 IATLLGLSVETVKSHVGNAMDKLGARDRTQMAVTALLYGLI 231


>gi|121592447|ref|YP_984343.1| two component LuxR family transcriptional regulator [Acidovorax sp.
           JS42]
 gi|222109254|ref|YP_002551518.1| two component LuxR family transcriptional regulator [Acidovorax
           ebreus TPSY]
 gi|120604527|gb|ABM40267.1| two component transcriptional regulator, LuxR family [Acidovorax
           sp. JS42]
 gi|221728698|gb|ACM31518.1| two component transcriptional regulator, LuxR family [Acidovorax
           ebreus TPSY]
          Length = 214

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 62/235 (26%), Gaps = 33/235 (14%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +    +++  +     + +  +        + +      +    +               
Sbjct: 1   MPPPTLLVADDHPLFRAALIQVLHERFAPLQTLEAASAATLGQALQ-------------- 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                +   LD  +     F  +           Y  +                      
Sbjct: 47  DHPEVELVLLDLAMPGARGFSAL-----LHVRGEYPQVPVVVISS---NDHPRVIRRAQQ 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   +     +   +  +   G                  A   ++      K  
Sbjct: 99  FGAAGFIPKSAPAEDMGAAIRAVLDGGSWFPP-----------MAAERSEADAALAAKLA 147

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +LT ++   L  +++G  + +IA  LG++ NTV  ++ +I++K    +R+ A   
Sbjct: 148 QLTPQQFRVLLCLADGLLNKQIAHELGLAENTVKVHVTAILKKLECYSRTQAAVL 202


>gi|119492940|ref|ZP_01623970.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106]
 gi|119452866|gb|EAW34040.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106]
          Length = 121

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
                     +  +L+ RE E    ++EG  +  IA  LGIS+ TV+ Y+  I  K    
Sbjct: 45  YLVRCQPKSDQSVQLSQREQEIAKLVAEGLPNKCIAKELGISQWTVSTYLRRIFGKLNVT 104

Query: 232 TRSGAIAY 239
            R+   A 
Sbjct: 105 NRAAMTAK 112


>gi|91782936|ref|YP_558142.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91686890|gb|ABE30090.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 229

 Score = 85.7 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 63/216 (29%), Gaps = 25/216 (11%)

Query: 30  SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRC 89
            +   R        S  MR+   +       F   R  +     LD  + +       + 
Sbjct: 19  DEAPVRRALATLMRSVDMRVETFSSAEEFLQF--ARPAVPSCLILDVRLRNKNGLAFQQE 76

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S          R   LF      +  ++         + +  F    +   +     
Sbjct: 77  IVQSGL--------RIPVLFMTGHGDIEMSVKAMKAGAMDFFAKPFRDQDMLDAIGHALA 128

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
           +    L       GL A+Y                 L+ RE E + +I  G  + +IA  
Sbjct: 129 RDAARLASEHMVAGLRASY---------------ETLSPREKEVVPFILAGLLNKQIASE 173

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           + +S  TV  +   +MRK   ++    +  A    I
Sbjct: 174 MNLSEITVKVHRGQVMRKLNARSLPDLVRKAEALGI 209


>gi|296168969|ref|ZP_06850636.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896355|gb|EFG76010.1| LuxR family transcriptional regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 530

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 3/136 (2%)

Query: 112 VFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQAN 171
           V                 YCS   +    R  L       ++        +   A     
Sbjct: 390 VRGEDLSVRDRILAAAESYCS-AMEPRPHRDALDDTGAARQLRSEAARGRLDGDAVEAVL 448

Query: 172 MFK--SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
                       +   LT RE E L  ++ G+++ EIA  L IS  TV N++  I  K  
Sbjct: 449 EAAGHRPSRRAVRPEGLTRREAEVLLHVARGQSNREIASALWISEKTVRNHVERIYAKIG 508

Query: 230 TKTRSGAIAYAVRNNI 245
              R GA  YA R+ +
Sbjct: 509 VSNRIGASLYATRHGL 524


>gi|239942524|ref|ZP_04694461.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988988|ref|ZP_04709652.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 206

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 55/221 (24%), Gaps = 24/221 (10%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           L    + L R             +       G     +          LD  +       
Sbjct: 10  LLADDEHLIRGALAALLALEEDLVVVAEAASGPEALAMALAHRPDVAVLDLQMPGADGVK 69

Query: 86  LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145
           +   +           L     +               A     +   T    R+   + 
Sbjct: 70  VATSLRAE--------LPDCRTMIVTSHGRPGHLKRALAAGVRGFVPKTVSARRLAEIIR 121

Query: 146 LLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDE 205
            +    R +  +                   D     D  LT RE E L   ++G    E
Sbjct: 122 TVHAGNRYVDPELAA----------------DAISAGDSPLTAREAEVLELAADGAPVAE 165

Query: 206 IAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           IA    +S+ TV NY++S   K   + R  A+  A     V
Sbjct: 166 IAERASLSQGTVRNYLSSAASKIGAENRHTAVRLARERGWV 206


>gi|146343657|ref|YP_001208705.1| CheY/LuxR family two-component transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146196463|emb|CAL80490.1| Two-component transcriptional regulator, CheY-LuxR families
           (two-component signal transduction system)
           [Bradyrhizobium sp. ORS278]
          Length = 305

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 70/226 (30%), Gaps = 31/226 (13%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           D     +V+      ++LAR+         T    A  +  G     + R          
Sbjct: 102 DAGGVDYVTKPIAVEEMLARIRVHLANARMTQSARAALDVSGRFLLAVNREGRLMWATPQ 161

Query: 76  SI-VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           +  + SD        +      ++                   +      G      S+ 
Sbjct: 162 AQKLLSDSFGSAEDLVLPDGLRQW------------------LDQAQKGKGAAKAAASIP 203

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                    +    P   ++                         +  +F LT RE E L
Sbjct: 204 DHPELRLYYMGGAGPNEFLL------------RLAKESSGDLPKEFSSEFGLTTREGEVL 251

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           +W+S+GKT+ +IA ILG+S  TV+ ++  I  K   + R+ A A A
Sbjct: 252 SWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAIA 297



 Score = 38.4 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 39/154 (25%), Gaps = 8/154 (5%)

Query: 27  PTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDL 86
               D    +  L   +     M  +    GA+   +V         LD+++     F+ 
Sbjct: 12  LVVDDSPETLRLLTDALD-GAGMTVMVALDGAAAMRIVDQITPDIILLDAVMPGIDGFET 70

Query: 87  VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLML 146
            R +          V+      F          +         Y +    V  +   +  
Sbjct: 71  CRKLKREAGLSNVPVI------FMTGLADTEHIVQGLDAGGVDYVTKPIAVEEMLARIR- 123

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           +      + +     + +   +   + +   + W
Sbjct: 124 VHLANARMTQSARAALDVSGRFLLAVNREGRLMW 157


>gi|88704024|ref|ZP_01101739.1| two-component system response regulator [Congregibacter litoralis
           KT71]
 gi|88701851|gb|EAQ98955.1| two-component system response regulator [Congregibacter litoralis
           KT71]
          Length = 206

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 2/124 (1%)

Query: 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKS 175
             E  +  A     YC       +++    ++   G  +    +  +  +          
Sbjct: 78  EAEAFSVLARGVRGYCHREAAPKQLQEVAEVIKNGGLWMPPALVQRLITVGQRVDTGKAP 137

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                    +LT RE E    +  G  + EIA  L +S  TV   + +I  K   + R  
Sbjct: 138 ASP--DYFADLTPREEEVALMVGRGFNNREIAEALSVSERTVKANLTAIFEKLGLRDRVQ 195

Query: 236 AIAY 239
              Y
Sbjct: 196 LALY 199


>gi|326388719|ref|ZP_08210310.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206793|gb|EGD57619.1| two component LuxR family transcriptional regulator
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 217

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 65/224 (29%), Gaps = 15/224 (6%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQK--LDSIVSSD 81
             +    D       L   ++  +    + E    +       D        LD  +   
Sbjct: 3   PTVLIADDHPLFRQALAMALATIVPGARIIEAGTLATAAKAAADTPDLSLITLDLKMPGA 62

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
             +  +  +           +           +   E           +     D+ +I 
Sbjct: 63  VGYSGIALLHAER-----PSVPILVVSGADNANAADEARAF---GAVGFLRKDADLPQIE 114

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +      G +   D    +   A          +   G    LT  +++ L  + EGK
Sbjct: 115 AAIR-----GALERPDAEAPVDPEAINAPAPVNPVERVRGTVAGLTPTQLKVLLAVLEGK 169

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            + +IA  LG+S  TV  ++ +IMRK   + R+ A   A    +
Sbjct: 170 LNKQIAYDLGMSEATVKAHMTAIMRKLDVQNRTQAALAARSLGL 213


>gi|284989297|ref|YP_003407851.1| two component LuxR family transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284062542|gb|ADB73480.1| two component transcriptional regulator, LuxR family
           [Geodermatophilus obscurus DSM 43160]
          Length = 270

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 18/222 (8%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             L  +      ++       LTE +      +      Q   +   
Sbjct: 58  MRVLLCEDQEIFRLGLRVVFEAQPDIAVVAETSHLTEALE-----VADGPGTQVVVVRQG 112

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +       L+R +            +    L           +         +       
Sbjct: 113 LVGCSGLPLLRDLCQ----------RATGVLVLAETGGDSGLMDVLQAGVRGFLPRRATA 162

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
            R+   +  L  +   +      ++     +                 LT R+ +  T +
Sbjct: 163 QRLADAVRALARQETALDSAVGRQL---VRHMTGDPSQTTAEGRALDRLTERQRDVATLV 219

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +EG +++EIA  L +S  TV +++ ++MR+   +TR+     
Sbjct: 220 AEGLSNEEIASRLFLSPATVKSHLTAVMRRLDIRTRTQLAIL 261


>gi|149914298|ref|ZP_01902829.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
 gi|149811817|gb|EDM71650.1| two component transcriptional regulator, LuxR family protein
           [Roseobacter sp. AzwK-3b]
          Length = 223

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 14/215 (6%)

Query: 36  MIPLDCTVSWTMRMYALTEY-VGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSE 94
           +  +  +   +  +    +   G    +    D  +    D  +      D      +  
Sbjct: 19  ICLVATSRMISEAIQHFLKTEYGFDVSVAGSIDEVRSLVADGNIPDVILLDPANT-GIKG 77

Query: 95  KDKYYNVLQRPTELFCPVFHTLPE---NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151
            D      +  ++    +F    +        +   +   S    +  +   + L+    
Sbjct: 78  LDALSQAARASSDSKIVLFTHKVDTNLAKNALSKGADGIISHGQSLRSLVNAIGLIQSGE 137

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILG 211
             I  +   E+              +    ++  LT RE   L   S+G T+ EIA  LG
Sbjct: 138 VFIPANINSELH---------HNWVEPARPRNEALTHREKRILQLASDGGTNKEIAQELG 188

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           I+ + V   + ++  K   K R+ A+  A R +++
Sbjct: 189 ITESQVKMVMRTLCAKLQAKNRTHAVVRANRLDLI 223


>gi|23477271|gb|AAN34621.1| response regulator GacA [Pseudomonas aeruginosa]
          Length = 136

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
             P            Y +    +  +   +  +F   R I      ++ L +        
Sbjct: 24  EDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDS 83

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
            +D        L+ RE++    I+       I+  L +S  TVN Y   I  K +  +  
Sbjct: 84  PFDS-------LSEREIQIALMIANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDV 136


>gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 336

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 65/227 (28%), Gaps = 15/227 (6%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T +V+      ++LARM           +     +  G +   +   D         +  
Sbjct: 112 TDYVTKPIRPKEVLARMHVHLQGARERRQARNALDAFGYASVTVRASDG------RLMWQ 165

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR---YCSLTFD 136
           +    +L+             V          +                           
Sbjct: 166 TPLARELLARYYGE------PVPGPAHVPEPVLTWLRLSVEHVLEAQARGEPLAEPPRLS 219

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
           V +    L L   +              +   Q    +S        F LT +E E L W
Sbjct: 220 VEQGARRLTLRLHQRNDDGATSAAAGDWMLIMQEASDESVIEAISLSFRLTAKEAEVLYW 279

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           + +GK + +I  ILG S  TV  ++  +  K   +TR+ A A A+  
Sbjct: 280 VIKGKINRDIGDILGSSPMTVKKHLERVYAKLGVETRTAAAALAMNR 326


>gi|300933201|ref|ZP_07148457.1| putative transcription regulator [Corynebacterium resistens DSM
           45100]
          Length = 215

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 29/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             +++  +D           + +D L  +            +                 +
Sbjct: 3   TRVLIVDDDPTILEAFPVYLSTTDDLKVVGTATTGRQALQWLET---------------N 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                  D  +      +L++              Q P  +    F T    +   +   
Sbjct: 48  SSDLVLSDIHMPDTDGIELLQHTQQLP--------QPPLFVAMTAFDTDETMLKCLSLGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             Y         I   L      G  +    L  +  +     +  + +          T
Sbjct: 100 VGYIIKGQAPESIIHSLRDAIHGGTALSPGCLSRLVGIKTANRSQSELHTPRV------T 153

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           GRE   L+ I EGKT++EI   + ++  T+   I+ +  + + + R      
Sbjct: 154 GRERVVLSLICEGKTNEEIGESMHLAEVTIRKIISQLFLRFSARNRVELAVK 205


>gi|260577246|ref|ZP_05845221.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
 gi|259020555|gb|EEW23876.1| two component transcriptional regulator, LuxR family [Rhodobacter
           sp. SW2]
          Length = 229

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 63/218 (28%), Gaps = 17/218 (7%)

Query: 22  FVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSD 81
            +   P   D LA  +          +  ++ + +                  D ++   
Sbjct: 18  VIDDHPLYCDALATTMESIFHTRRIRKATSMGDALQQLRARFS---------PDLVLLDL 68

Query: 82  WPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIR 141
              D+       +  +    +            +     +  A     +           
Sbjct: 69  NLPDVSGLSCYLKIKELTPDVPVIVISALT---SQEVIGSVMAAGAAGFIPKDCGRQTFE 125

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             +  ++     +       +   AA       +  V   +  +L+ ++   L+ I +GK
Sbjct: 126 AAMRQIWDGEPYVPPGYTAAMATQAAEP-----TGAVISRRIADLSQQQSRILSLICKGK 180

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +  IA  + I+  TV  +I +++R+   + R+ A   
Sbjct: 181 PNKLIAYEMQIAEATVKAHITALLRRLGVQNRTQAALM 218


>gi|82699111|ref|YP_413685.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus
           2308]
 gi|163842464|ref|YP_001626868.1| monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189023446|ref|YP_001934214.1| LuxR family transcriptional regulator [Brucella abortus S19]
 gi|225851728|ref|YP_002731961.1| monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|254690497|ref|ZP_05153751.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|254696618|ref|ZP_05158446.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254701000|ref|ZP_05162828.1| Monoamine regulon transcriptional regulator [Brucella suis bv. 5
           str. 513]
 gi|254709343|ref|ZP_05171154.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|254731531|ref|ZP_05190109.1| Monoamine regulon transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|256030866|ref|ZP_05444480.1| Monoamine regulon transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256045986|ref|ZP_05448858.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256112698|ref|ZP_05453619.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           bv. 3 str. Ether]
 gi|256264760|ref|ZP_05467292.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260169768|ref|ZP_05756579.1| Monoamine regulon transcriptional regulator [Brucella sp. F5/99]
 gi|260546468|ref|ZP_05822208.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260563267|ref|ZP_05833753.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261759311|ref|ZP_06003020.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|294851595|ref|ZP_06792268.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|82615212|emb|CAJ10153.1| Bacterial regulatory protein, LuxR family [Brucella melitensis
           biovar Abortus 2308]
 gi|163673187|gb|ABY37298.1| Monoamine regulon transcriptional regulator [Brucella suis ATCC
           23445]
 gi|189019018|gb|ACD71740.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19]
 gi|225640093|gb|ACO00007.1| Monoamine regulon transcriptional regulator [Brucella melitensis
           ATCC 23457]
 gi|260096575|gb|EEW80451.1| bacterial regulatory protein [Brucella abortus NCTC 8038]
 gi|260153283|gb|EEW88375.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M]
 gi|261739295|gb|EEY27291.1| bacterial regulatory protein [Brucella sp. F5/99]
 gi|263095169|gb|EEZ18838.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9]
 gi|294820184|gb|EFG37183.1| monoamine regulon transcriptional regulator [Brucella sp. NVSL
           07-0026]
 gi|326408219|gb|ADZ65284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28]
 gi|326537934|gb|ADZ86149.1| monoamine regulon transcriptional regulator [Brucella melitensis
           M5-90]
          Length = 245

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 80  AVMIHIGSKRLADPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 140 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 188 VHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688]
 gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S]
 gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688]
          Length = 265

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 152 RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF---ELTGREVECLTWISEGKTSDEIAV 208
             I         L   + A+   S D+H  ++    +L+ RE+E + W+  GKT+ EI +
Sbjct: 167 PYIDSALRQLEHLPVQHPADKEASEDLHEEENEALEQLSSREIEIMEWVRNGKTNQEIGM 226

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           IL IS  TV N++  I +K     R+ A++ 
Sbjct: 227 ILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257


>gi|192359096|ref|YP_001981884.1| putative two-component response regulator [Cellvibrio japonicus
           Ueda107]
 gi|190685261|gb|ACE82939.1| putative two-component response regulator [Cellvibrio japonicus
           Ueda107]
          Length = 196

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 5/137 (3%)

Query: 103 QRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEI 162
           Q    +       + +         + Y         +     ++   G  +  D + ++
Sbjct: 58  QGCKVIGLTAAEQVEQARRVMEAGASGYLHYLAVPELLVQVASVVEAGGLWLGADLMRQL 117

Query: 163 GLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIA 222
               A Q +     D        LT RE      ++ GKT+ E+A  L I+  TV  ++ 
Sbjct: 118 IRATARQLSASPLVD-----LSSLTCRERLVAEAVAAGKTNKEVARELEITERTVKAHMG 172

Query: 223 SIMRKTATKTRSGAIAY 239
           +I  K   + R   +  
Sbjct: 173 AIFEKLQVRDRLQLVLL 189


>gi|239993174|ref|ZP_04713698.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonas macleodii ATCC 27126]
          Length = 214

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 7/120 (5%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +   T     I   +  +      +  +       L+     + + +     K   
Sbjct: 97  GALGFIPKTASAQDIANAVEAILDGDVWLPDN-------LSEDVDEVNEEFSELADKVAS 149

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  + + L ++ +G  + +I   L I+  TV  ++ +I +K     R+ A+  A +  +
Sbjct: 150 LTPSQYKVLCYMRDGLLNKQIGFNLDIAEATVKAHVTAIFKKLGINNRTQAVLIASQLEL 209


>gi|170736598|ref|YP_001777858.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169818786|gb|ACA93368.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 212

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 59/224 (26%), Gaps = 31/224 (13%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            D    + V       D LA ++    TV    R YA  +   A               L
Sbjct: 9   PDRPIVAIVDDDEPVRDGLALLLR---TVGLPTRCYADAQAFLAD----ADDRALGCVLL 61

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +      D +  ++           +    +       +             +    
Sbjct: 62  DLRMPGMSGLDALDRLSAR---------RALPVIVLTGHGNVDACRRAFKRGALDFLRKP 112

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D   +   +     +                  Q     +      +   L+ RE E L
Sbjct: 113 VDDDELIDTVQQALRRQAA---------------QRGQDDAGQTRAARVATLSAREREVL 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
             I  G ++ EIA  LG+S  TV  Y A++  K    +    + 
Sbjct: 158 EGIVRGWSNKEIARALGLSPRTVETYRANVFDKLQAASLVELVR 201


>gi|172063800|ref|YP_001811451.1| LuxR family transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171996317|gb|ACB67235.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MC40-6]
          Length = 227

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 29/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++        + V+ +  + D+   +    C         AL      +  +     
Sbjct: 1   MNVLMIDSPPLFVAGVADVLCKRDVNWHVWSARCPEDVLRLRDALLPETVEAITIECDEH 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +    + +  +      +                                I       
Sbjct: 61  AARPSWPNVLHETFAGAPWL-----------CVATAVCRRTIADALLAGAAGIIDRHA-- 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
                           L  +      +  +                        + FE L
Sbjct: 108 --------SADEFADALGRVAAGAIYVPPND-------GGATQARPGGLPAGDDRAFERL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T R+ + L  ++EGK++ +I  +L ++  T+ N++ ++ R+     R+ A  +  R+
Sbjct: 153 TPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRTEAALWLARH 209


>gi|298252514|ref|ZP_06976309.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
 gi|297533404|gb|EFH72287.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella
           vaginalis 5-1]
          Length = 223

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 44/166 (26%), Gaps = 11/166 (6%)

Query: 74  LDSIVSSDWPFD--LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            D ++   +      ++ +    +     ++        P+       +           
Sbjct: 53  PDVLLIDMYMSGVSGIKILYELRRRYSLPIII--AITSFPIND---YALKASTAGAQGIV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   L  +           +  +       A          G+   LT  E 
Sbjct: 108 GKNH-PETICAMLSSIAHG--TFKPQIIGNLHFDDTTTAFQRLQNKPKNGRLA-LTDHET 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E +   S G T+ +IA  L +   TV   +  + +K     RS  I
Sbjct: 164 EIVKLCSRGMTNAQIAKRLFVETCTVETILRRVFKKLNVTNRSQLI 209


>gi|298293707|ref|YP_003695646.1| LuxR family transcriptional regulator [Starkeya novella DSM 506]
 gi|296930218|gb|ADH91027.1| two component transcriptional regulator, LuxR family [Starkeya
           novella DSM 506]
          Length = 218

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 35/237 (14%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVG------ASHFLLVRWDLFQE 71
           QR       P    L   +I +D   +    + +L   VG      AS   L+   L + 
Sbjct: 3   QRPQPRPSAPPSDPL---VIVVDDDPALREALSSLFRSVGLQVELFASAAELLAAKLPEV 59

Query: 72  QK---LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
            +   LD  +      D    +A SE +           +F      +P  +        
Sbjct: 60  ARCLVLDIRLPGVSGLDFQAQLARSEIEM--------PTIFMTGHGDIPMTVRAMKAGAV 111

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + +  F    +   +                    L   +    K+          LT 
Sbjct: 112 DFLTKPFRDQDMLDAVASAIR---------------LDRERREARKAVSGVQNLYETLTP 156

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE + +  ++ G  + ++A  +G+S  TV  +   +MRK    + +  +  A    +
Sbjct: 157 REKQVMELVTSGLMNKQVAAEVGLSEITVKIHRGHVMRKMGAHSLAELVRMAETLGL 213


>gi|308050904|ref|YP_003914470.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM
           9799]
 gi|307633094|gb|ADN77396.1| transcriptional regulator, LuxR family [Ferrimonas balearica DSM
           9799]
          Length = 225

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 49/122 (40%)

Query: 115 TLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFK 174
                +   A   +      + +  +   +  L        R+ +               
Sbjct: 85  NDESAVGFIALGFSGLIVRDYTLEMLPRAIRALLADQLWFSREAMSSSLKQLVNVGGHCG 144

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                 G  ++L+ +E +   ++ +GK++ EIA+ + IS +TV N++++I++KT  ++R 
Sbjct: 145 HSVNVLGAQYQLSAKEQQVFHYLLQGKSNKEIALGMNISLSTVKNHVSNILQKTHKQSRH 204

Query: 235 GA 236
             
Sbjct: 205 QL 206


>gi|261880311|ref|ZP_06006738.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270333001|gb|EFA43787.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 318

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            +   G    L+GRE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 INNSPGSQENLSGREKDVIIALVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1]
          Length = 243

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 73/239 (30%), Gaps = 21/239 (8%)

Query: 26  LPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85
           +    D    +I +    +    M  L + +G     L       + +      ++ P  
Sbjct: 2   IQRLQDFSEDIIGMTGPRAVWAGMAHLADDLGMPFCTLTMARRAPDLRSSQ-FITNLPAP 60

Query: 86  LVRCMALSEKDKYYNVL-QRPTELFCPVFHTLPENI-------------TPPAGMDNRYC 131
                           L     ++    F T P+++             T   G+    C
Sbjct: 61  FQDTYCEGGFINDDPFLSLICRDMTAAGFMTDPDDLPEADQRQGAFLDLTRSFGVGTALC 120

Query: 132 SLTFDVARIRIGLMLLFPKGRIIL-----RDRLWEIGLLAAYQANMFKSYDVHWG-KDFE 185
                  +   G  ++    R             ++ L                      
Sbjct: 121 IPVRTTRQSEFGGWVIGGDLRARDVADGREIAAMQLQLAGLIAFERLSVLTRQANHAHRR 180

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L+ RE ECL W+S G    +IA  L IS + V+ YI +  RK   +TR  A+A+A+ + 
Sbjct: 181 LSPRERECLQWLSAGLRVTQIAHRLDISESAVHLYIKNARRKFGARTREQAVAHAIVSG 239


>gi|116671431|ref|YP_832364.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611540|gb|ABK04264.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24]
          Length = 545

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 61/213 (28%), Gaps = 14/213 (6%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF----DLVRCMAL 92
             +         +  +    G +       D       D  +               +A 
Sbjct: 341 ADVATRRHLLPALVEIELAAGDTAAARRSADELAAVAQDCAMPMVQAASCQAGGAVLLAE 400

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
            E  +   VL+R           L   +  P       C      A    G         
Sbjct: 401 GEPARAQPVLRRA--------WMLWRELGVPFEAAR--CRTLVGRACRASGDEDAAEMDF 450

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
              R     +G   A      +   V       LT RE+E L  ++ GK +  IA  L +
Sbjct: 451 EAARAEFLALGAAPAAAWTSLEHTPVQEKDAGPLTPREIEVLRLVAAGKANRVIAGELYL 510

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           S  TV  +I++I  K   ++R  A  YA  + +
Sbjct: 511 SEKTVARHISNIFLKLGLRSRVAATRYAFEHGL 543


>gi|325529069|gb|EGD06070.1| LuxR superfamily regulatory protein [Burkholderia sp. TJI49]
          Length = 267

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 60/261 (22%), Gaps = 29/261 (11%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D +R         +  +   +     T      +  L    G S F     +   E+  
Sbjct: 7   DDVKRNDIAQPHAPKLGVADTLAHAQSTAERNRIVSGLLHLTGFSTFAYFALEFAHERVE 66

Query: 75  DSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------------- 120
              +   + P                           P+   L +               
Sbjct: 67  SLYLHEAFTPATYRGDYVRHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRQRDDGCVTP 126

Query: 121 ---------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRDRLWEIGLLAAY 168
                        GM +                M           I    + +   +   
Sbjct: 127 ASLDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITPATVEQALSIGLS 186

Query: 169 QANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225
                    +   ++     LT  E E L  I+EG +  EI   L  S + V+ ++  + 
Sbjct: 187 VHKFASPQLIATSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKLR 246

Query: 226 RKTATKTRSGAIAYAVRNNIV 246
           ++     R        +  ++
Sbjct: 247 KRFGVANRIQLTYLTSKLELI 267


>gi|291514716|emb|CBK63926.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [Alistipes shahii WAL 8301]
          Length = 298

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%)

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                 +      K   L+ RE E +  + +G T+ +IA  L IS +TV  +  +I  K 
Sbjct: 207 AVERLAAAGPRTVKPEPLSAREKEIIVCVVKGMTNKQIADALCISAHTVITHRRNIAAKL 266

Query: 229 ATKTRSGAIAYAVRNNIV 246
              + +G   YA+ N +V
Sbjct: 267 QIHSAAGLTIYAIVNKLV 284


>gi|300174919|dbj|BAJ10692.1| hypothetical bacteriocin immunity protein [Streptococcus
           thermophilus]
          Length = 117

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 22/138 (15%)

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
               F                + +   +   +   +  +        ++  +        
Sbjct: 1   MLTGFDLPVYEYKAEQLGIEGFVNKNIEAETLLEVIDSVISGHNYYSKEVEF-------- 52

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                           ELT RE E L ++ EG    EIA  L IS  T+ N+I +I+ K 
Sbjct: 53  --------------HDELTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKL 98

Query: 229 ATKTRSGAIAYAVRNNIV 246
              +   AI  A +   +
Sbjct: 99  EVDSTIRAIIKARKMGYI 116


>gi|238760598|ref|ZP_04621728.1| Positive transcription regulator evgA [Yersinia aldovae ATCC 35236]
 gi|238701185|gb|EEP93772.1| Positive transcription regulator evgA [Yersinia aldovae ATCC 35236]
          Length = 215

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 31/237 (13%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+++  +       V  L  + D ++ +   D                G     L +   
Sbjct: 9   NVLIVDDHPVARLAVRMLLEK-DNMSIVGEADD---------------GLKALSLAKELC 52

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D  + S    DLV+C+     +           L               +   +
Sbjct: 53  PDFIVVDIDIPSLNGIDLVKCLRSRGYE--------GGILVLSGKDDEHYVKRCASAGAD 104

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            + S   ++      +  +        RD+  ++ +            +    K   L+ 
Sbjct: 105 GFISKRNNLLGFTDAMRAIKGGYGYYPRDQSRKVAM-------SGSIEENGQSKISTLSD 157

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           +E++ L ++ +G    +I+V + IS  TV+ Y   +M K   K       ++ RNNI
Sbjct: 158 KELQVLRFLVKGIKVVDISVKMQISDKTVSTYKRRLMLKLELKNMVELYDFSQRNNI 214


>gi|193782620|ref|NP_435754.2| Response regulator [Sinorhizobium meliloti 1021]
 gi|193073076|gb|AAK65166.2| Response regulator [Sinorhizobium meliloti 1021]
          Length = 204

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 21/214 (9%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLD---SIVSSDWPFDLVRCMAL 92
           +  +D   S+   +  +    G         +    +       I+       L      
Sbjct: 5   VHIVDDDKSFRAAVGRMLAASGFQIESYSSGEELLARLPRGSGCILLDLQMPGLSGLELQ 64

Query: 93  SEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGR 152
           +              +F      +   +       + +       A +   +     +  
Sbjct: 65  ARLADLAP---LLPVVFLTGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAV-----ERA 116

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           + L +   +    A     +  S          LT RE +    I  GK + +IA  L  
Sbjct: 117 LQLCETRRKEHDRAQALHTLLAS----------LTPRESQVSDQIVRGKRNKQIAFELNT 166

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           S  TV  +   +M K   ++ +  ++ A R  ++
Sbjct: 167 SERTVKAHRHKVMEKLGVRSLAEVVSMAERLGLL 200


>gi|171319948|ref|ZP_02909024.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
 gi|171094804|gb|EDT39842.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           MEX-5]
          Length = 301

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 63/273 (23%), Gaps = 39/273 (14%)

Query: 13  NREDEQRTSFVSHLPTRS---------DLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +RE   +  +   L              +   +     T      + +L    G S F  
Sbjct: 29  SRERPVQVVWCDDLKRGDITQPHAPKLGVADTLANAQSTAERNRIVASLLHLTGFSTFAY 88

Query: 64  VRWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-- 120
              +  +E+     +   + P                           P+   L +    
Sbjct: 89  FALEFSRERVESLYLHEAFTPNTYRGDYVRHNHHDIDPRTLDARVCNMPIVWDLQQLRRE 148

Query: 121 ---------------------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILR 156
                                    GM +                M           I  
Sbjct: 149 HRERDDGPCVTPAALDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITP 208

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGIS 213
             + +   +            +   ++     LT  E E L  I+EG +  EI   L  S
Sbjct: 209 ATIEQALSIGLSVHKFASPQLIATSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTS 268

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + V+ ++  + ++     R        +  ++
Sbjct: 269 AHNVDYHLRKLRKRFGVANRIQLTYLTSKLELI 301


>gi|237715864|ref|ZP_04546345.1| transcriptional regulator [Bacteroides sp. D1]
 gi|229443511|gb|EEO49302.1| transcriptional regulator [Bacteroides sp. D1]
          Length = 221

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +            D  
Sbjct: 100 MAFGVVMKDNSKEEIMTAIQCATRKQRYICNHVSNLL------LSGASSPLAASSVDDHL 153

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 154 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 213

Query: 246 V 246
           V
Sbjct: 214 V 214


>gi|195541891|gb|ACF98092.1| putative response regulator FixJ [uncultured bacterium 1042]
          Length = 206

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 62/235 (26%), Gaps = 40/235 (17%)

Query: 10  IVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLF 69
           + +  ++E     ++ L        RM                          +      
Sbjct: 8   VHIVDDEEPVRKSLAFLLMMHGFTVRMHNSATEF-----------------LAVAPEIRN 50

Query: 70  QEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNR 129
                D  +      +L+R + ++       V+             +P  +         
Sbjct: 51  GCLVTDLRMPDMSGVELLRNLQIAHAMIPAIVI--------TGHGDVPMAVDAMKAGALD 102

Query: 130 YCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGR 189
           +    FD   +   +     +                  +            +  +L+ R
Sbjct: 103 FIEKPFDDEVLIDAIKRAAGR---------------LVERRGEADDAASIQSRLGQLSER 147

Query: 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           E++ L+ +  G  +  IA  L IS  TV  + AS+M K   +     +  A+   
Sbjct: 148 ELQVLSGVVAGLPNKTIAYDLDISPRTVEVHRASVMTKMQARNLPELVRMALATG 202


>gi|167588259|ref|ZP_02380647.1| transcriptional regulator, LuxR family protein [Burkholderia
           ubonensis Bu]
          Length = 301

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 68/270 (25%), Gaps = 31/270 (11%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            V +V   + ++      H P    +   +     T      + +L    G S F     
Sbjct: 33  PVQVVWCDDVKRGDVGQPHAPRLG-VADTLSHAQSTAERNRIVTSLLHLTGFSTFAYFAL 91

Query: 67  DLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL--------- 116
           +   E+     +   + P                           P+   L         
Sbjct: 92  EFAHERVESLYLHEAFTPATYRGDYVRHSHHDVDPRTLGARVCNMPIVWDLQQLRRQHRQ 151

Query: 117 -PENITPPAGMDNRYCSLTFD-------------VARIRIGLMLLFP---KGRIILRDRL 159
             +  + P+G  + +     D                     M           I    +
Sbjct: 152 RVDGASVPSGALDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITPATV 211

Query: 160 WEIGLLAAYQANMFKSYDVHWGKDFE---LTGREVECLTWISEGKTSDEIAVILGISRNT 216
            +   +            +   ++     LT  E E L  I+EG +  EI   L  S + 
Sbjct: 212 EQALSIGLSVHKFASPQLIATSRERTVNGLTPFEQELLIGIAEGASDKEIGRRLDTSAHN 271

Query: 217 VNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           V+ ++  + ++     R        +  ++
Sbjct: 272 VDYHLRKLRKRFGVANRIQLTYLTSKLELI 301


>gi|170725009|ref|YP_001759035.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810356|gb|ACA84940.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 221

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 19/158 (12%)

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +  S    +  V         P      E  +               +  +  G+  +  
Sbjct: 65  LIASRLASHCPV---ALHQVEP---NTLEVESALLLGIKGVLYSNQGMDSLMSGITNMVE 118

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-------LTGREVECLTWISEGKT 202
                 R       L++   + + +  D       +       LT RE   ++ +S G  
Sbjct: 119 GELYFDR------QLISQVFSRLVRKLDSANDTLQDSAVMMQMLTSRERTIISLVSSGAR 172

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           + EIA  L IS +TV  +I+SI RKT ++ R   + +A
Sbjct: 173 NKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210


>gi|71279078|ref|YP_270095.1| LuxR family DNA-binding response regulator [Colwellia
           psychrerythraea 34H]
 gi|71144818|gb|AAZ25291.1| DNA-binding response regulator, LuxR family [Colwellia
           psychrerythraea 34H]
          Length = 216

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
             +     +   +  V ++ + +  +                       N  +  +    
Sbjct: 97  AMSFGAAGFIPKSTPVPQMLVAIKEVLNGTLWTPDGE-----------FNPNEKVNNIDD 145

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           K   LT ++ E L   ++G  + +IA  LG S +T+ ++ + I  K   + R+ A+ 
Sbjct: 146 KIASLTPKQHEILLMFADGLLNKQIASQLGTSESTIKSHASIIFLKLGVRNRTQAVI 202


>gi|189463679|ref|ZP_03012464.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM
           17393]
 gi|189438629|gb|EDV07614.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM
           17393]
          Length = 217

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L+    +    LD  +     F+L+  +             +   +   +   +
Sbjct: 41  GLQAAELIERRDYDIYILDVSIPDMSGFELIAKIREMN--------DQAKIIVNTMHEEI 92

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                      N     +   A +   +  +                 ++    +     
Sbjct: 93  WIVNRLVQCGVNAVILKSSASAELMTAIRCVLRGEA----HACPRFAAISQKLNSASAGL 148

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                     T RE + L  +++G  + EIA +L IS NTV  +   ++ K   K     
Sbjct: 149 QPKDAP----TRRERDVLEAVAKGMNTHEIADLLKISENTVETFRKRLISKFGAKNAIDM 204

Query: 237 IAYAVRNNIV 246
           +  AV    +
Sbjct: 205 VVKAVAQGWI 214


>gi|17158788|ref|NP_478299.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134737|dbj|BAB77295.1| alr7652 [Nostoc sp. PCC 7120]
          Length = 262

 Score = 85.3 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 23/232 (9%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +   ++ ++R+                    G      V         ++  +    
Sbjct: 4   INVVIIENENISRVGAAAILSETGKIQVCGLAKTGKEGIETVDQQKPDIVVINIDLPDIN 63

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD----VA 138
             D++  +          V+         +           +   + Y            
Sbjct: 64  GTDVISLIKCK-HTSIKIVVMTANSSRDTIN-------AAISNGADCYYCKNNAREEVGE 115

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL----TGREVECL 194
           R    +M  +     I       +        +  +S D       +L    + +E+  L
Sbjct: 116 RFIEAVMAAYNNESWIDPTINRILI-------DNLRSNDTADRDSLDLLSDFSNKEITVL 168

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
              + G  ++EIA ++ +S  TV +Y+ +   K   K R  AI  A+R  I+
Sbjct: 169 KLAAGGMKNNEIANVMYVSEGTVRSYLHNSFIKLGVKDRLNAIREAIRLGIL 220


>gi|304382776|ref|ZP_07365260.1| transcriptional regulator [Prevotella marshii DSM 16973]
 gi|304336095|gb|EFM02341.1| transcriptional regulator [Prevotella marshii DSM 16973]
          Length = 318

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            + +   +  L+ RE + +  + +G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 241 INQNQTSNESLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIARKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|149184470|ref|ZP_01862788.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
 gi|148831790|gb|EDL50223.1| transcriptional regulator, LuxR family protein [Erythrobacter sp.
           SD-21]
          Length = 140

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%)

Query: 147 LFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
              +   +    L     + +               +  L+ RE + L  +  GKTS EI
Sbjct: 39  FSSEPSELAEGVLTATHSILSSAHLQICRIMDRANPEISLSQRERQVLELMGSGKTSVEI 98

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
             IL IS  TV  Y   +  K     R  A   A++  +V
Sbjct: 99  GTILAISPETVKTYTKRLYEKLEANDRVTATVRALKLGLV 138


>gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 319

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 23/219 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LAR+           +   + +    +   L       +     +  
Sbjct: 114 VDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILAL-------DVHGKIVWK 166

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    DL+              L+         F  L +   P       Y + +  +  
Sbjct: 167 TQKASDLLNQYL--------PELEGFEAGLKAWFSDLEQEKDPKKLTSCSYSTPSQQLQL 218

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +                + +  L+    +              +LT RE E + W+  
Sbjct: 219 LLLT--------PWESEPSVAKNYLIQIKTSTPALEMADILKYCPQLTQREAEVMHWLLL 270

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A
Sbjct: 271 GKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|225011599|ref|ZP_03702037.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-2A]
 gi|225004102|gb|EEG42074.1| two component transcriptional regulator, LuxR family [Flavobacteria
           bacterium MS024-2A]
          Length = 209

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 11/172 (6%)

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D ++      D+     + +    Y  +                 I+        + S  
Sbjct: 49  DIVIIEMELKDVSAVQTVRKLKLLYPNISTLIFTSL---RESVYGISILKAGAKGFLSKE 105

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
                +   +  +  KG  I  +   +I        N              L+ RE+E L
Sbjct: 106 ISRETMIDAIEKVHHKGYHITSNFANQI--------NKNVDLHRPRNAYGTLSSREIEVL 157

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++ EGK + EIA  L I + TVN Y + +M+K      +     A    ++
Sbjct: 158 KYLIEGKRNVEIAATLKIHQKTVNTYKSRLMKKLEVTNSADLYQQAFNLELI 209


>gi|90423410|ref|YP_531780.1| two component LuxR family transcriptional regulator
           [Rhodopseudomonas palustris BisB18]
 gi|90105424|gb|ABD87461.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris BisB18]
          Length = 218

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 15/221 (6%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDW 82
           ++ +    D    +      +        LT       F L R        +D  + +  
Sbjct: 1   MTTVLIIDDHPIVLQGCARILEANGPTKVLTAVSMVDGFRLYRQHDPDVIIVDLTMHTGL 60

Query: 83  PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRI 142
              L     +   ++   +L         +               + Y         +  
Sbjct: 61  LSGLSFIRRMRVVNRRIPILVLSMHRDPVIV------SRALQAGASGYVLKDSAAEDLLK 114

Query: 143 GLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKT 202
            +  +      I  +   +I L+                +   +T RE+E L+ ++EGK 
Sbjct: 115 AIKRVSDGRPFISDELAADIVLM---------ETRGQKHRLQTMTLRELELLSILAEGKP 165

Query: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
              IA  L +S  TV N +A I  K   +T    +  A+  
Sbjct: 166 YGLIAEELNVSYKTVANSVALIKNKLGVRTLPELMRIAIDQ 206


>gi|326332686|ref|ZP_08198949.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
 gi|325949514|gb|EGD41591.1| putative transcriptional regulatory protein DegU [Nocardioidaceae
           bacterium Broad-1]
          Length = 219

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 67/215 (31%), Gaps = 29/215 (13%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQ--EQKLDSIVSSDWPFDLVRCM 90
           + R+  +         +  +         ++      +     +D I+       L    
Sbjct: 1   MLRVAVVSPQEVVMRGLTTMLADYP-DRLVVTALPSVRSKAPGVDVILYDTLGLHLADGS 59

Query: 91  ALSEK-DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
            L     +    +   +    P        +   +     + S++     +   + +   
Sbjct: 60  DLVHLLQETDAKVLIFSRDMRPDLR-----VKAYSLGAKAWVSMSVHAGELVRAIEMTAS 114

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
                                      +   G    LT REVE L  I++G ++ +IA  
Sbjct: 115 GEP--------------------IGEREDRLGTVAGLTTREVEVLALITQGLSNADIAEK 154

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           L +S NT+ ++I    RK    TRS A+++A+ + 
Sbjct: 155 LVVSVNTLKSHIRQAYRKIEVTTRSQAVSWAITHG 189


>gi|304413627|ref|ZP_07395071.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
 gi|304283718|gb|EFL92112.1| DNA-binding HTH domain-containing protein invovled in quorum
           sensing [Candidatus Regiella insecticola LSR1]
          Length = 252

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 42/232 (18%)

Query: 54  EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVF 113
           E  G   +     +     ++  I       D               V+           
Sbjct: 21  ESYGDIKYAYAIMNKKNTTEMRVI---SNRPDWFEVYVRDRYQHIDPVIITALNRITSFP 77

Query: 114 HTL-------------------------PENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                                         +I     + + Y  +  D       L +L 
Sbjct: 78  WDENIMINSDLKLPKIFNIVSTNLQLIEVFSIAKKYNIISGYTFILHDCNNNLAVLSILM 137

Query: 149 PKGRIILR--------DRLWEIGL------LAAYQANMFKSYDVHWGKDFELTGREVECL 194
                 +         D+L  + L      ++ Y+            K  + + RE E L
Sbjct: 138 DDQTGNMLKEKIEKNKDKLQMLLLNTHDILISLYKETHGAVCKNSESKKEKFSSRENEVL 197

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            W S GKT  EIA+I GI   TV  ++ +I++K        AI     + ++
Sbjct: 198 YWFSMGKTYSEIAIIFGIKLGTVKFHMGNIVKKLGVLNAKHAIRLGTESQLI 249


>gi|256158896|ref|ZP_05456746.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M490/95/1]
 gi|256254270|ref|ZP_05459806.1| Monoamine regulon transcriptional regulator [Brucella ceti B1/94]
          Length = 245

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 80  AVMIHIGSKRLANPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 140 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 188 VHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|254252667|ref|ZP_04945985.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895276|gb|EAY69156.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 222

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 63/220 (28%), Gaps = 16/220 (7%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
           T  +S+  T+ D    +  +D   S    +  L   +G           F+         
Sbjct: 4   THAMSNAATQDDSAGVVYIVDDDSSVRASLDTLLRSMGLRVVTFASTGEFRAASWQDA-P 62

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           S    D+          +          +    F  +        G    +    F    
Sbjct: 63  SCLLLDVRLRGESGLMFQQAQDRPALPIVVMTGFADVEVCRKALKGGAIDFLVKPFTDQE 122

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           +   + L       +  D        A  +                LT RE E L+++  
Sbjct: 123 LIDAVNLA------LSLDAARRTENDARKRLQQSFEL---------LTRREREVLSYVIS 167

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           G  + +IA  LG+S  TV  + AS+MRK    +    +  
Sbjct: 168 GALNKQIASHLGLSLITVKQHRASVMRKMNASSLVDLVRK 207


>gi|116618242|ref|YP_818613.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097089|gb|ABJ62240.1| DNA-binding response regulator (Rec-wHTH domains) [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 210

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 72/226 (31%), Gaps = 19/226 (8%)

Query: 21  SFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80
             V +     + +  +                    G     +++        LD  +  
Sbjct: 1   MIVDNHFIIREGIKLIFESHSDYDVAYEA-----ADGDEAIDIIKKSQVDLVLLDIKMPK 55

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
              F+++  +   +      V+          F  +             Y      +  I
Sbjct: 56  KDGFEVMSFI--HDHFPDLPVV------VLSTFDNVVNIQRMLKLGAKGYLLKDASIETI 107

Query: 141 RIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEG 200
              +        ++ ++++ +I     +             +D+ L+ +E++ L+ ++ G
Sbjct: 108 FTTIDSAITGNMVL-QNQISDILFSQNHT-----ETSPGETQDYNLSEKELKILSRVARG 161

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
                IA+ + +S  T+ + +  I  K    T   A+A AV+NN++
Sbjct: 162 VKIKLIALEMHLSERTIKSNLTDIYIKMNVSTGVQAVALAVKNNLI 207


>gi|153809558|ref|ZP_01962226.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185]
 gi|149127803|gb|EDM19027.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185]
          Length = 254

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                D +LT RE E L  I +G  S EIA  L +S  TVNN+  +I+ K        AI
Sbjct: 185 AVVPADQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLNVDNVIEAI 244

Query: 238 AYAVRNNIV 246
             A    I+
Sbjct: 245 NRAESFGIL 253


>gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803]
 gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803]
          Length = 92

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +  L+ RE+E +  +SEG T+ EIA  L IS+ TV+N+++++  KT +K R   + +A+ 
Sbjct: 11  NVSLSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMD 70

Query: 243 NN 244
           + 
Sbjct: 71  HG 72


>gi|56475502|ref|YP_157091.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56311545|emb|CAI06190.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 211

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 34/213 (15%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLF---------QEQKLDSIVSSDWPFDLVRC 89
           +D   +    +  L E  G         + F             LD  +     F+L   
Sbjct: 15  VDDDEALRDSLVWLLESSGYRAVAFESAEQFLAAYQPAMTGCLVLDVRMPGMSGFELFDE 74

Query: 90  MALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFP 149
           +                 +F      +P  ++        +    F    +   +     
Sbjct: 75  LRRQSST--------LPVIFITGHGDVPMAVSAVKKGAVDFIEKPFGDRDMLGLI----- 121

Query: 150 KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-LTGREVECLTWISEGKTSDEIAV 208
                      E  L A  ++   +  +    +    LT RE E L  I  GK + +IA 
Sbjct: 122 -----------EGCLAAEQESRGKRRLEAETTRRLGSLTQREREVLDLIIAGKLNKQIAD 170

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           +LGIS  TV  + A +M K    + +  + + +
Sbjct: 171 VLGISIKTVEVHRARVMEKMGAHSLAKLVRHVI 203


>gi|298682192|gb|ADI95259.1| PedR1 [Pseudomonas putida]
 gi|313499256|gb|ADR60622.1| Two component LuxR family transcriptional regulator [Pseudomonas
           putida BIRD-1]
          Length = 221

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + + +   +++   +  +      +  D +       + + N   S+     +   
Sbjct: 98  GAVGFITKSSPRSQMIEAIEQILNGNVYLPPDIIRAQKSSTSRRHNDAPSFPPEMLQA-- 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 156 LTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|306837014|ref|ZP_07469961.1| LuxR family response regulator [Corynebacterium accolens ATCC
           49726]
 gi|304567111|gb|EFM42729.1| LuxR family response regulator [Corynebacterium accolens ATCC
           49726]
          Length = 226

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 71/242 (29%), Gaps = 26/242 (10%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           +  ++L  +D      + H    ++ +      +       ++ A               
Sbjct: 6   KTALLLVDDDPLVLEALGHYFATAEDMEVRATAENGKDALEQLKA--------------- 50

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           +       D  +       L+R +   E       +                     +  
Sbjct: 51  NDIDAVIADIHMPEMDGTVLLREINKLE----DPPVFIAMTAM----DNDDTLKEVMSHK 102

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQ---ANMFKSYDVHWGKD 183
              Y   +   A I+  +      G ++    L  +    +      +   +   H  + 
Sbjct: 103 AAAYILKSSKPAYIQDTVREAVRGGTVVAPQSLTRLFQQMSELQTDDDDAAAAPAHAPET 162

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             ++  +   L  + EGK+++EIA     +  TV  Y++S++ +   K+R      A++ 
Sbjct: 163 PTISPAQERILDLVCEGKSNEEIATSTHYAAGTVKKYVSSLLSEFHAKSRLELAVKALKA 222

Query: 244 NI 245
             
Sbjct: 223 GY 224


>gi|302545882|ref|ZP_07298224.1| two-component system response regulator TcsR2 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463500|gb|EFL26593.1| two-component system response regulator TcsR2 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 201

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 24/190 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G                LD  +      D    +  +  D           L    F   
Sbjct: 36  GDEIVPRALEAGPDVALLDIELPGRSGLDAAAALRRALPD--------CQVLILTTFGRP 87

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        +      V  + + +  +    R+I                +   + 
Sbjct: 88  GYLRRAMEAGAAGFLVKDGPVEELAVAIRRVLAGERVI----------------DPGLAA 131

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE + L    +G T  +IA  + +S  TV NY++S + KT T+ R  A
Sbjct: 132 AALSAGPNPLTQRERDVLAAAVDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEA 191

Query: 237 IAYAVRNNIV 246
           +  A +N  +
Sbjct: 192 VRAARQNGWL 201


>gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 925

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            +LT RE++ L  +++   + +I   L IS +TV +++  + +K     R  AIA A R 
Sbjct: 856 TDLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRT 915

Query: 244 NIV 246
            ++
Sbjct: 916 GLL 918


>gi|167034135|ref|YP_001669366.1| two component LuxR family transcriptional regulator [Pseudomonas
           putida GB-1]
 gi|150014692|gb|ABR57213.1| PedR1 [Pseudomonas putida]
 gi|166860623|gb|ABY99030.1| two component transcriptional regulator, LuxR family [Pseudomonas
           putida GB-1]
          Length = 221

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               + + +   +++   +  +      +  D +       + + N   S+     +   
Sbjct: 98  GAVGFITKSSPRSQMIEAIEQILNGNVYLPPDIIRAQKSSTSRRHNDAPSFPPEMLQA-- 155

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           LT +++  L  +++G+++ +IA  L I+  TV  ++++I+RK     R  AI  A
Sbjct: 156 LTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSA 210


>gi|170726344|ref|YP_001760370.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC
           51908]
 gi|169811691|gb|ACA86275.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family
           [Shewanella woodyi ATCC 51908]
          Length = 205

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
            ELT R+ E L W+  GK++ EI+ IL IS +TV  ++  I ++     R  A+
Sbjct: 128 IELTQRQHEILHWVKLGKSNWEISTILSISIDTVKFHLRGIYKRLGVSNRVQAV 181


>gi|111224202|ref|YP_714996.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111151734|emb|CAJ63454.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 201

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 63/229 (27%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R             LA ++ L+  +    ++       G      V         +D  
Sbjct: 2   IRVLLADDQHLVRGALAALLSLEDDIEVVGQVGR-----GDEVVAAVGALRPDVVLMDVE 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +  +       ++          F                +       
Sbjct: 57  MPGIDGLAAAAAVRATTPTTQVLIV--------TTFGRTGYLRRAMEAGALGFVVKDAPA 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R++            A                  LTGRE + L   
Sbjct: 109 EALAAAIRRVARGERVVDPTLAAATLAGGA----------------SPLTGRERDVLVAA 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +G T  +IA  L +S  TV NY++S++ KT T+ R  A+  A  +  +
Sbjct: 153 RDGATVADIAGRLFLSEGTVRNYLSSVIAKTGTRNRMEALRTAEESGWL 201


>gi|114321300|ref|YP_742983.1| two component LuxR family transcriptional regulator
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227694|gb|ABI57493.1| two component transcriptional regulator, LuxR family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 264

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 75/258 (29%), Gaps = 36/258 (13%)

Query: 25  HLPTRSDLLAR---MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS----I 77
            +  R D  +    ++ +D        +      +G         D  +++  +     +
Sbjct: 2   DVMQREDSHSEPVAVLVVDDEKYIVEEIVEYLSELGYDCESATSADEARKKFFERKDIKV 61

Query: 78  VSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
           V +D        +  +          +           +    I         Y     +
Sbjct: 62  VITDIKMPGEDGITFAGWLIDSFEADRVFEVAVLTGHGSHSNAIAALRSGVREYLQKPVN 121

Query: 137 VARIRIGLMLL------------FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           + ++   +  L              +  + L      +  +A+    +  S     G   
Sbjct: 122 LDQLARCVEKLVERVNRRSEIRGGGEIGVKLDSVATSVSTMASDLEEIKGSVMGQRGGQA 181

Query: 185 E----------------LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                            LT R+ E    I++G ++ +IA  L IS NTV  Y++ ++  T
Sbjct: 182 TRGKEGVQGGLVEGFARLTKRQREVTELIAKGHSNYQIANHLQISENTVKLYVSQVLALT 241

Query: 229 ATKTRSGAIAYAVRNNIV 246
               R+     A R+ ++
Sbjct: 242 GVSNRTQLALLANRHGLL 259


>gi|170699404|ref|ZP_02890449.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135660|gb|EDT03943.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 227

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 29/237 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N+++        + V+ +  + D+   +    C         AL      +  +     
Sbjct: 1   MNVLMIDSPPLFVAGVADVLCKRDVNWHVWSARCPEDVLRLRDALLPETVEAITIECDEH 60

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +    + +  +      +                                I       
Sbjct: 61  AARPSWPNVLHETFAGAPWL-----------CVATAVCRRTIADALLAGAAGIIDRHA-- 107

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE-L 186
                           L  +      +  +                        + FE L
Sbjct: 108 --------SADEFADALGRVAAGAIYVPPND-------GGATQARPGGLPAGDDRAFERL 152

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T R+ + L  ++EGK++ +I  +L ++  T+ N++ ++ R+     R+ A  +  R+
Sbjct: 153 TPRQRDVLRLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVSNRTEAALWLARH 209


>gi|116070777|ref|ZP_01468046.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
 gi|116066182|gb|EAU71939.1| transcriptional regulator, LuxR family protein [Synechococcus sp.
           BL107]
          Length = 228

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM--FKSYDVHWGKDFELTG 188
             +  D A     ++                + ++  +       +  ++ +     LT 
Sbjct: 109 IPVEHDKASWLEAVVAEADIIEDQKPLEAAVLAVMGHHSYRSPSLRGGELPYLSCPRLTP 168

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           RE E L  ++ G T  EIA  L +S  T   Y   +++      R  A+   +R  +V
Sbjct: 169 REYEVLDRLARGMTDKEIAEALVVSEQTARTYTKRLLKTLEVNNRVQAVLKGMRCGMV 226


>gi|152983891|ref|YP_001349304.1| LuxR family DNA-binding response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150959049|gb|ABR81074.1| DNA-binding response regulator, LuxR family [Pseudomonas aeruginosa
           PA7]
          Length = 210

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 70/211 (33%), Gaps = 21/211 (9%)

Query: 35  RMIPLDCTVSWTMRMYALTEYVGASH------FLLVRWDLFQEQKLDSIVSSDWPFDLVR 88
           R+I  D    +   M    + +           L     L ++ +    +  D  F  + 
Sbjct: 4   RIIVADDHPLFREGMLRTLQRLLPDASLEEAGDLAGVVHLAEQGEEPDSLILDLRFPGLT 63

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
            + L           R   +   +               + +   +     +   ++ + 
Sbjct: 64  RIDL--LADLRRRFPRTALIVVSMVDDPQLIAEVMDAGVDGFLGKSIAPEELGEAILAIR 121

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
               ++  +    + L ++   +              LT R+++ L  +++GK++ EI  
Sbjct: 122 AGEVLVRYEPSGLLPLESSALLD-------------GLTERQLDVLRLLAQGKSNKEIGR 168

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +L IS  TV  +++S+++     +R+ A   
Sbjct: 169 VLDISHYTVRIHVSSLLKALDVPSRTAAAVK 199


>gi|75674440|ref|YP_316861.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419310|gb|ABA03509.1| two component transcriptional regulator, LuxR family [Nitrobacter
           winogradskyi Nb-255]
          Length = 216

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 53/188 (28%), Gaps = 23/188 (12%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G+S    VR        LD  +  +  FD++R +A                L       +
Sbjct: 43  GSSFLEAVRNASPACVILDLNLPGESGFDVLRRLADERV--------AAPILVISGAADI 94

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
              +         +    F    I   +                             +  
Sbjct: 95  SMAVAAMKYGALDFLEKPFSSDVIIERVRAAVKVW---------------REARGSERDG 139

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
             ++     LT RE E L+ ++ G ++ E    LGIS  TV  + A IM K   K  +  
Sbjct: 140 FANFPGRHLLTCREREVLSQVARGASNKEAGRRLGISPRTVEVHRARIMDKLGAKNTADL 199

Query: 237 IAYAVRNN 244
           I       
Sbjct: 200 IRIVFSEG 207


>gi|87118437|ref|ZP_01074336.1| Response regulator [Marinomonas sp. MED121]
 gi|86166071|gb|EAQ67337.1| Response regulator [Marinomonas sp. MED121]
          Length = 207

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 36/231 (15%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
           N+++  +     S +    +  +    +           ++                   
Sbjct: 3   NVLIADDHPLFRSALKVTLSGVEEDISLEETGGFKDTLQQLVR---------------SD 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                LD  +       L+  + L  +     ++                     A    
Sbjct: 48  MDMLLLDLKMPDS--EGLLGLIKLRSRFPQLAIV------VISANEDPQIIKEVKAAGAL 99

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            Y + +  +  I+  +  +                     +     + D    K  +LT 
Sbjct: 100 AYINKSTPLEEIQSIISSVLKGNCHFP-------------KWTSENTVDTVSEKIAQLTP 146

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           ++   LT I++G  + +IA  L +  +TV  +I+ I +K     R+ A  +
Sbjct: 147 QQFRVLTMIAKGDLNKQIAYQLNVKESTVKTHISEIFKKLGIINRTQAALF 197


>gi|289627087|ref|ZP_06460041.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646654|ref|ZP_06477997.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330869632|gb|EGH04341.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330888707|gb|EGH21368.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 209

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 24/222 (10%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDS 76
             R       P   + + R I      +       L E +  +     R D      LD 
Sbjct: 2   PCRIIVADDHPLFREGMLRTIERLIPEAIIEEAGNLDEVLTLAR----RGDEVDTLVLDL 57

Query: 77  IVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFD 136
                     +  +            +R + +   +   L       +   + +     D
Sbjct: 58  RFPGLTSMQTIGSLRSE--------FKRTSIIVVSMVDDLDTISQVMSQGADGFIGKNID 109

Query: 137 VARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196
              I   ++ +     ++             Y+       D+  G    LT R+ E L  
Sbjct: 110 PLEIAESIIAIRDGEVVV------------KYKPEGSLLSDLDSGAISHLTARQREVLGL 157

Query: 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           ++ GKT+ EIA  LGIS  TV  +++S+++     TRS A A
Sbjct: 158 VASGKTNKEIARDLGISPFTVRIHVSSLLKALGVPTRSAAAA 199


>gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC
           21756]
 gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC
           21756]
          Length = 249

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 26/236 (11%)

Query: 37  IPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI------VSSDWPFDLVRCM 90
             L    +   R+ AL   +G  +          E  L          + +W    +R  
Sbjct: 9   GRLARVTALAERVAALGREMGLPYVAASADISSPEPMLGVDGKPLAETTFEWLDSALRYW 68

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHT----------------LPENITPPAGMDNRYCSLT 134
                      +        P F+                    +     G+ +   +  
Sbjct: 69  RDRAFALRAPFILAARYTAEPFFYHQGRFASWRPMPRLETIEVADAAESFGVRSAIIAPA 128

Query: 135 FDVARIRIGLMLLFPKG----RIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGRE 190
           +    +   ++            +   R  E+   A    + ++           LT RE
Sbjct: 129 YLTGGVIGAVVWAAANSVENVPALYAARADELHGAALRLVSAYRDGQDDDAPPVRLTKRE 188

Query: 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           ++CL W + GKT  +IA I+GI+  TV  ++ +   K     R+ AI  A     +
Sbjct: 189 IQCLKWAAAGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAIHRATGLGYI 244


>gi|160883312|ref|ZP_02064315.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
 gi|156111296|gb|EDO13041.1| hypothetical protein BACOVA_01281 [Bacteroides ovatus ATCC 8483]
          Length = 233

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   +     K R I       +       +       +    D  
Sbjct: 112 MAFGVVMKDNSKEEIMTAIQCATRKQRYICNHVSNLL------LSGASSPLAMSSMDDHL 165

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 166 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 225

Query: 246 V 246
           V
Sbjct: 226 V 226


>gi|13475642|ref|NP_107209.1| two component system response regulator [Mesorhizobium loti
           MAFF303099]
 gi|14026398|dbj|BAB52995.1| two component system response regulator [Mesorhizobium loti
           MAFF303099]
          Length = 225

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 14/216 (6%)

Query: 35  RMIPLDCTVSWTMRMYALT-------EYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87
           R++  D    +   +           E   A+ F  V   L ++  +D  +       L 
Sbjct: 3   RIVIADDHGLYRRGLRLALMAGIPSVEIFEAACFDAVVNLLEEQASIDLAILDLNMPGLF 62

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
               LS+    Y   +           +  E +T  +   + Y   +     + + +  +
Sbjct: 63  NQEVLSDVLAAYPDTRFAIVSGD---DSRSEILTALSIGLHGYIVKSQKDEEVVLAVNEI 119

Query: 148 FPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW----GKDFELTGREVECLTWISEGKTS 203
                 +            +Y A       +           LT R+ + L  ++EG ++
Sbjct: 120 LAGRIYVPALLSRTSADQRSYAALPSARNPIRQRVGSSDLGRLTSRQRDVLKLMAEGYSN 179

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            EIA  L I+  T   + A+I+R+   + R+ A   
Sbjct: 180 KEIARNLDIAEATTKIHAAAILRELGVRNRTEAAVL 215


>gi|306818841|ref|ZP_07452563.1| transcriptional regulatory protein [Mobiluncus mulieris ATCC 35239]
 gi|304648527|gb|EFM45830.1| transcriptional regulatory protein [Mobiluncus mulieris ATCC 35239]
          Length = 230

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           + ++   +D      ++ L  R   +  +            +  +               
Sbjct: 8   IRVIFADDDAVYLRGMTDLLNRLKNIEIVGQASDGDEAMRLIETIDH------------- 54

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
                 LD  + S    ++         D+          L    F          A   
Sbjct: 55  --DVVLLDVTMPSMGGIEVTESALGFNPDE--------KILMLTAFERPDMLRQSLAAGA 104

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD--FE 185
             + +   D   I   +  +F  G+I+       + L+  Y  +          K     
Sbjct: 105 RGFLTKETDFREIGAAIQRVFRGGKILDE---KSLSLVLDYFVSANPENGDQELKAKIEA 161

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L       +  I E +++ EIA   G+S +TV  YI  I++K   + R       +R  +
Sbjct: 162 LPEHLRIIVNLIGEARSNKEIAKATGLSLHTVTTYIKRILQKLNIR-RGQLTLEMIRLGM 220


>gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1]
 gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1]
          Length = 319

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 23/219 (10%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      ++LAR+           +   + +    +   L       +     +  
Sbjct: 114 VDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILAL-------DVHGKIVWK 166

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
           +    DL+              L+         F  L +   P       Y + +  +  
Sbjct: 167 TQKASDLLNQYL--------PELEGFEAGLKAWFSDLEQEKDPKKLTSCSYSTPSQQLQL 218

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
           + +                + +  L+    +              +LT RE E + W+  
Sbjct: 219 LLLT--------PWQTEPSVAKNYLIQIKTSTPALEMADILKYCPQLTQREAEVMHWLLL 270

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A
Sbjct: 271 GKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309


>gi|297200265|ref|ZP_06917662.1| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
 gi|297147615|gb|EDY61015.2| two-component system response regulator [Streptomyces sviceus ATCC
           29083]
          Length = 281

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 58/226 (25%), Gaps = 3/226 (1%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ +++  +       ++        +          +      A  E       L+   
Sbjct: 29  RIRVLVVDDHRIFAESLAAALAAEPDVEVSAAGSGPAALRSLERAAAEGRRFDVLLVDAD 88

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                Q +   +S     +      +S              +                  
Sbjct: 89  LGGNVQGIRPAMSVQDGSEEGLVDGISLVAGVRTGQPAVRIVVLAEKDDPRRAALALQAG 148

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            + + +    ++R+   +  +      +    L  +              +        L
Sbjct: 149 ASGWVAKDCSLSRLLTVIRGVLRDETHLPPALLTGVLRELTAARKHRTESERLVES---L 205

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           T RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 206 TPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 251


>gi|89902528|ref|YP_524999.1| LuxR family transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347265|gb|ABD71468.1| transcriptional regulator, LuxR family [Rhodoferax ferrireducens
           T118]
          Length = 231

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 15/190 (7%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           +  +  R       +   +  S+      R +    + +    +        P      E
Sbjct: 31  ATVMQTRLPSPPAAQC-LVWLSNADVQWARNLRQILQTQPDARVVLL--SSMP---ESDE 84

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG-----LLAAYQANMF 173
            +         Y       A ++   +++   G  +  D L  +       LA+  A   
Sbjct: 85  GLRALNEGARGYTHAYGVPALLQEVALVIEHGGLWVGPDLLQRLVGSTNVALASRPAAAK 144

Query: 174 KSYDVHWGKDF----ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229
               V           L+ RE +    +S G+++ E+A ++ IS  TV  ++ ++  K  
Sbjct: 145 AQVPVTASSSTNAWSTLSAREAQVARSVSAGRSNKEVASLMFISERTVKAHLGAVFEKLG 204

Query: 230 TKTRSGAIAY 239
            + R   +  
Sbjct: 205 VRDRLQLVLR 214


>gi|603067|gb|AAA66239.1| VsrC [Ralstonia solanacearum]
          Length = 220

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 13/228 (5%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
            TS +  L    D L+    L                  +    L   D  +  + D ++
Sbjct: 1   MTSSLRSLLVVDDHLSP--YLARPPFLRTPCLKSKSMRPSPAQALALID--EGIRPDVVL 56

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDV 137
              W  D     A+ E        +             PE +          +     D 
Sbjct: 57  LDVWLSDCTGFDAMRELRGKLPEARFAFMSAE----NTPEIVAKAQALGAIGFIGKHADA 112

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
                 +  +F        +   ++G       +           +  LT R+   L  +
Sbjct: 113 HAFSQAVAGIFGGASSFPSED--DLGTANGK--SGASHGIPITPAELGLTPRQGSVLALL 168

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
            EG  +  IA  LG++ NTV  ++++I+++   +TR   I+   R  +
Sbjct: 169 LEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMERFRL 216


>gi|254384074|ref|ZP_04999419.1| luxR family two component system response regulator [Streptomyces
           sp. Mg1]
 gi|194342964|gb|EDX23930.1| luxR family two component system response regulator [Streptomyces
           sp. Mg1]
          Length = 203

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 62/242 (25%), Gaps = 39/242 (16%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           +  V ++L  ++      ++ L    D L  +              A             
Sbjct: 1   MSPVRVLLADDEHLIRGALAALLGLEDDLLVVAEAASGPEALAMARA------------- 47

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
                   + D  V              +        ++            L   +    
Sbjct: 48  -------HRPDVAVLDLQMPGADGVSVATALRAELPGIRTMIVTSHGRPGHLKRALA--- 97

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
                +   T    R+   +  +   GR +  +                   D     D 
Sbjct: 98  AGVRAFAPKTVSAQRLAELIRTVHAGGRYVDPELAA----------------DAISAGDS 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            LT RE E L    +G    EIA    +S+ TV NY++S   K   + R  A+  A    
Sbjct: 142 PLTAREAEVLELAGDGAPIAEIAERASLSQGTVRNYLSSAASKLGAENRHTAVRLARERG 201

Query: 245 IV 246
            V
Sbjct: 202 WV 203


>gi|332141579|ref|YP_004427317.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551601|gb|AEA98319.1| putative regulator in two-component regulatory system ; LuxR family
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 211

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 29/232 (12%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
             I++  +       +S         A++I          ++                 D
Sbjct: 2   TRILVADDHPLFREALSGALEPYFENAQIIQAGSLDDALEKLNEF--------------D 47

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +   LD  +           + L E+     +             T+       +   
Sbjct: 48  GVELVLLDLNMPG--GEYFNGLITLREQYPNIPI------GVVSGSDTVEVVAQVMSLGA 99

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +     +   I   ++ +    + +      E+  +            V   +  ELT
Sbjct: 100 QGFIPKVSETREIAQAIVDIIGGKKWLPEGMEEELEKVDD-------ELKVLLQRFRELT 152

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            ++++ L+++  G  + +IA  + ++  T+  +I++I+RK    TR+ A+  
Sbjct: 153 PKQIQVLSYLRAGLMNKQIAHEMNVTEATIKAHISAILRKLEINTRTQAVLL 204


>gi|319778175|ref|YP_004134605.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171894|gb|ADV15431.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 204

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 53/206 (25%), Gaps = 31/206 (15%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
           +   D  V       A             + DL      D  +      + +R +     
Sbjct: 24  LATADFAVRLHESATAFLST--------AKGDLDGCIVTDVRMPGIDGIEFLRQLRSGGH 75

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
                       +       +   +       + +    FD   +   +           
Sbjct: 76  TI--------PVIVMTGHADVALAVQAMKEGASDFIEKPFDDEMLIDAIRSTLANR---- 123

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
                                    G+   L+ RE + L  +  G  +  IA  LGIS  
Sbjct: 124 -----------NQANATHPQSSEIHGRLATLSERERQVLDGLVSGLPNKTIAYDLGISPR 172

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAV 241
           TV  + A++M K A  + S  +  A+
Sbjct: 173 TVEIHRANVMSKMAAGSLSHLVRMAL 198


>gi|284032031|ref|YP_003381962.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836]
 gi|283811324|gb|ADB33163.1| transcriptional regulator, LuxR family [Kribbella flavida DSM
           17836]
          Length = 225

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 10/212 (4%)

Query: 36  MIPLDCTVSWTMRMYALTEYVGASHFL--LVRWDLFQEQKLDSIVSSDWPFDLVRCMALS 93
           +      V     +  L         +  L+  D       D  V +  P  L +    +
Sbjct: 18  VAVAAEQVLIAGAITTLLRSEQGIEVVADLMCGDETGRSPADMTVVTGDPSVLGKLHHSA 77

Query: 94  EKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI 153
             D  + V+     +   V       +           S       +   +  +   G  
Sbjct: 78  GADVSHPVVAIAGAVPHHVV------LGAIRQGCRAIVSDVAVDIELAQAVRAVAGGGVF 131

Query: 154 ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGIS 213
           +    +    LL    A +             LTGRE E L  +  G+T+  IA +L IS
Sbjct: 132 LSP--MMAGPLLDWLAAQLPIDQAPLLDAKLLLTGREQEVLKLLGAGRTNAGIAGVLVIS 189

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             TV  ++  I  K   ++R+ A+    +  +
Sbjct: 190 EATVRTHVYRIQTKLGLQSRTEAVILGYQFRL 221


>gi|317406059|gb|EFV86324.1| LuxR family Two component transcriptional regulator [Achromobacter
           xylosoxidans C54]
          Length = 204

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 47/190 (24%), Gaps = 24/190 (12%)

Query: 49  MYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108
           + + +          +         LD  +      D++  +A +       V+      
Sbjct: 32  LRSESHADPQQFLAQLAPQAIGCVVLDIRMPGISGLDVLARLADTS---DLPVV------ 82

Query: 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAY 168
                  +        G    +     D       +                        
Sbjct: 83  MLTGHANVDLCRRAFKGGAMEFLQKPVDDDVFLDAVQAAVRGHIAR-------------- 128

Query: 169 QANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                        +   L+ RE E L  I +G ++ EIA    +S  TV  Y A++  K 
Sbjct: 129 -RERLAVTQAAADRLARLSTREHEVLERIVQGMSNKEIAREFDLSPRTVETYRANVFAKL 187

Query: 229 ATKTRSGAIA 238
              + +  I 
Sbjct: 188 EADSLAQLIR 197


>gi|261209952|ref|ZP_05924252.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
 gi|260841017|gb|EEX67549.1| transcriptional regulator LuxR family [Vibrio sp. RC341]
          Length = 214

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K R  AIA+
Sbjct: 153 IDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAW 208


>gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
 gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3]
          Length = 934

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 10/145 (6%)

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           L     L  P     P        +     + + +    R  +  +              
Sbjct: 793 LLECLALAQPGEWIQPFVEAGEPLL--GELATSAEAGHSRDFIRCVLTAYDSCATTSKHN 850

Query: 162 IGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYI 221
            G  A +  +             +LT RE++ L  +++   + +I   L IS +TV +++
Sbjct: 851 KGTSAPHIPDHV--------GLTDLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHL 902

Query: 222 ASIMRKTATKTRSGAIAYAVRNNIV 246
             + +K     R  AIA A+R  ++
Sbjct: 903 KHVYQKLEVSNRRDAIAKAMRVGLL 927


>gi|292491953|ref|YP_003527392.1| LuxR family transcriptional regulator [Nitrosococcus halophilus
           Nc4]
 gi|291580548|gb|ADE15005.1| regulatory protein LuxR [Nitrosococcus halophilus Nc4]
          Length = 239

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 66/224 (29%), Gaps = 32/224 (14%)

Query: 17  EQRTSFVSHLPTRSDLLARMIPLDCTV-SWTMRMYALTEYVGASHFLLVRWDLFQEQKLD 75
           +     V   P R   L  +I              A  E    SH             LD
Sbjct: 29  KPTVFIVDSYPLRDLTLRELINAQDWEVKTYNSAEAFLEAFDPSH--------PGCLLLD 80

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
                     L + +             R   LF  +  T+ + +         +     
Sbjct: 81  VHAPRMGGLALQKQLEDQNS--------RLPLLFVSIQGTVSQAVQAIHAGAVDFLIKPV 132

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             + +                +RL E    +       +  +    +  +LT RE + + 
Sbjct: 133 KPSLLI---------------ERLQEGLAHSLRIQEAQRKQEEITTRLSQLTPREQQVME 177

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            + EGK S  IA  LGIS  TV ++ A +M K  T+ R+  I  
Sbjct: 178 GLIEGKLSRIIASELGISTKTVEHHRAQVMTKLQTRNRAELIQL 221


>gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900]
          Length = 319

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  I  K   + R+ A+A
Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHIFEKLCVENRTAAVA 309


>gi|237745463|ref|ZP_04575943.1| two-component system response regulator [Oxalobacter formigenes
           HOxBLS]
 gi|229376814|gb|EEO26905.1| two-component system response regulator [Oxalobacter formigenes
           HOxBLS]
          Length = 219

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 131 CSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAY-----QANMFKSYDVHWG 181
           CS     +  R  L ++  KG  +        +  +  L++        +          
Sbjct: 97  CSPLMPESECRKILDVVSKKGVWLSSAGIPALMERLKGLSSRSPVSPYPDREPVAAGWAE 156

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           +   LT RE E    ++ G+ +  IA  L IS  TV  ++ SI  K   + R   + Y
Sbjct: 157 RLNSLTRREHEIARLVATGENNKNIARKLDISERTVKAHLTSIFDKLQIRDRLQLVVY 214


>gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 307

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 62/221 (28%), Gaps = 26/221 (11%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             ++S      +L AR+                 +  G     +            +   
Sbjct: 106 VDYLSKPINVDELRARIRVHLRNARSAQSARVALDAAGRHLLAVKGDGAIHWSTPQATRL 165

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVAR 139
            +                  + L+   +                  + +           
Sbjct: 166 INAATG------------SDDGLELVVKHIATFMSERARLGPARDNLVS-------ISNG 206

Query: 140 IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            +  L   F                L    A   ++ D    + F LT RE E L WI++
Sbjct: 207 GQAALQFSFLGAIGADE-------YLFRLTATNQRADDGVLRQHFSLTQRESEVLLWIAK 259

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
           GK++ +I  ILG+S  TVN ++  I  K   + R+ A   A
Sbjct: 260 GKSNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 300



 Score = 39.9 bits (92), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 41/166 (24%), Gaps = 7/166 (4%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
              +    +    D     +              L    G++   +V         LD++
Sbjct: 2   AEPALPRDIVLLVDDSPEALGFLTDALEQSGFSVLIATSGSAALNIVERITPDLILLDAV 61

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           + S   F+  R +  +       V+      F          +         Y S   +V
Sbjct: 62  MPSMDGFETCRRLKANVGVAQIPVI------FMTGLTETEHVVHALESGGVDYLSKPINV 115

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD 183
             +R  +  +  +     +     +     +   +     +HW   
Sbjct: 116 DELRARIR-VHLRNARSAQSARVALDAAGRHLLAVKGDGAIHWSTP 160


>gi|126445300|ref|YP_001061264.1| LuxR response regulator receiver [Burkholderia pseudomallei 668]
 gi|126224791|gb|ABN88296.1| regulatory protein, LuxR:Response regulator receiver [Burkholderia
           pseudomallei 668]
          Length = 230

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D  A +  ++  +S +  +  +           L+  +       D  +     
Sbjct: 4   DLIVADDHPALVAGIEHALSRSNAIRVVGTASNSTELVDLLTCERCDILITDYAMPGGSH 63

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  ++   +            +            +          +    +  +   
Sbjct: 64  GDGLGLLSFLRRHHPD-----LKIIVFTAIDNPALIASMARLGARAIVNKMDHIDNLIAT 118

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     +          + A+ ++           + +L+ RE+E +     G + 
Sbjct: 119 VQAVYAGASCLP-------AGIGAFASSRLAVDGEAPEIERQLSARELEIVRLYVSGLSV 171

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L  S+  V+    + MRK   +  +G   YA    ++
Sbjct: 172 NEIAAYLHRSKQAVSTQKMNAMRKLGIERDAGLFRYAYETGLM 214


>gi|289675728|ref|ZP_06496618.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae
           FF5]
          Length = 260

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 65/243 (26%), Gaps = 41/243 (16%)

Query: 31  DLLARMIPLDCTVSWTMRMYALTEYVGASHFL----------LVRWDLFQEQKLDSIVSS 80
           D + +++ +D        +    E  G                           D  +  
Sbjct: 4   DPITKVLVVDDQPLIVEELCEFLESSGYECVRCHSSLEAIERFSADSTIGIVLCDLEMPG 63

Query: 81  DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARI 140
               ++V  M ++    +         +         + I         Y     D+  +
Sbjct: 64  MNGIEMVGAMKMTGGKTH-----LFEAIMLTGQAEKKDVIKALRAGIADYYQKPVDLEEL 118

Query: 141 RIGLML--------------------------LFPKGRIILRDRLWEIGLLAAYQANMFK 174
             G+ L                                    D +      A    +  +
Sbjct: 119 LEGVQLQVQALHERQKNRQQLGLLNEKLQFLAASIDDLYKNLDSVQNNPQPARKARDRQE 178

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
                     +L+ R+++    +S G T+ +IA  LGI+ NTV  Y++ ++R T    R+
Sbjct: 179 RDGQMPVALAKLSPRQLDVARLVSTGLTNYQIACELGITENTVKLYVSQVLRLTHMHNRT 238

Query: 235 GAI 237
              
Sbjct: 239 QLA 241


>gi|256424138|ref|YP_003124791.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039046|gb|ACU62590.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM
           2588]
          Length = 255

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%)

Query: 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
              +   LT REVE L   ++G   ++IA  + ++ +TV  Y   I  +        A+A
Sbjct: 188 RKSEKPVLTEREVEVLRLHAQGLNINQIAERIFVAPDTVKYYRRRIFERLEVSNIVEALA 247

Query: 239 YAVRNNIV 246
           YAV   ++
Sbjct: 248 YAVNAKLI 255


>gi|241766560|ref|ZP_04764419.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
 gi|241363195|gb|EER58778.1| two component transcriptional regulator, LuxR family [Acidovorax
           delafieldii 2AN]
          Length = 204

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 24/171 (14%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
             +      + +  +       +                     +         +   + 
Sbjct: 55  LTLPGIQGLEGLERLRA----WHPPATIVVMSAAEGPEW----AVEGLRRGARGFIPKSL 106

Query: 136 DVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLT 195
             A +   L  +   G  +                    +  V      ELT R+ + L 
Sbjct: 107 SPAAMVQALEQVMRGGVHVHA----------------LDTLGVARRTGIELTPRQRQVLG 150

Query: 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +++  ++  IA  L +S NTV  ++A+I        R  A   A+   ++
Sbjct: 151 LLTQNYSNKAIARTLDMSVNTVRVHVAAIFGALEVDNRVDAARMAITQGLI 201


>gi|91225486|ref|ZP_01260608.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio alginolyticus 12G01]
 gi|91189849|gb|EAS76122.1| putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA
           family) [Vibrio alginolyticus 12G01]
          Length = 201

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 25/168 (14%)

Query: 73  KLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCS 132
            LD  ++    FD  + +     +           +F     +   +        + Y  
Sbjct: 57  ILDVNLADCDGFDFYKRIKSHGYE--------GKVIFFSAETSQMYSQMAFRSGADGYVC 108

Query: 133 LTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVE 192
            + +   ++  +  +                    Y    FK       +  +L+ RE  
Sbjct: 109 KSENHDILKDAIEAVEKG-----------------YTFFKFKQVVNSVREMPQLSSRESA 151

Query: 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
            + ++ +GK++ EIA +L IS  TV+ Y   ++ K   K        A
Sbjct: 152 VMKYLLQGKSNREIASVLSISDKTVSTYKRRLLDKFNVKNIVELTRVA 199


>gi|282898699|ref|ZP_06306687.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196567|gb|EFA71476.1| Transcriptional Regulator with GAF sensor, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 216

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 23/219 (10%)

Query: 32  LLARMIPLDCTVSWTMRM-YALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCM 90
           +   +  ++        +   ++ + G  H+ +         +    ++     ++    
Sbjct: 8   IFEAIAHVETEQELQQALMETISLHFGVHHWGISF-------REHQFLTGMEIPEIPAVC 60

Query: 91  ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD----NRYCSLTFDVARIRIGLML 146
             +       V     E   P    L               +          R+   L  
Sbjct: 61  LEAN-----PVGSYVVERHAPTHELLVLAPEDWKNFCTRHEHVMTGPIVCDGRLVGTLNF 115

Query: 147 LF-PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG-----KDFELTGREVECLTWISEG 200
              P       + L ++  L  + +    +    W       +  LT RE+E    +++G
Sbjct: 116 ARDPGSPPFNNNDLADLSALCIHLSAKIATLQAKWNMVKPITECPLTARELEIAKLVAQG 175

Query: 201 KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            T+ EIA  L IS+NTV   +  + +K     R+  +A 
Sbjct: 176 LTNGEIASQLWISQNTVKQSLKRMFKKLGVSARAEMVAK 214


>gi|260756053|ref|ZP_05868401.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759277|ref|ZP_05871625.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760999|ref|ZP_05873342.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|261316853|ref|ZP_05956050.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261751522|ref|ZP_05995231.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265987924|ref|ZP_06100481.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992398|ref|ZP_06104955.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994141|ref|ZP_06106698.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|260669595|gb|EEX56535.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671431|gb|EEX58252.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676161|gb|EEX62982.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|261296076|gb|EEX99572.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261741275|gb|EEY29201.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262765122|gb|EEZ11043.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003464|gb|EEZ15757.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264660121|gb|EEZ30382.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
          Length = 254

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 89  AVMIHIGSKRLADPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 148

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 149 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 196

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 197 VHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|254713235|ref|ZP_05175046.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M644/93/1]
 gi|254716411|ref|ZP_05178222.1| Monoamine regulon transcriptional regulator [Brucella ceti
           M13/05/1]
          Length = 245

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 80  AVMIHIGSKRLADPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 139

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 140 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 187

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 188 VHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 231


>gi|308235123|ref|ZP_07665860.1| transcriptional regulator, LuxR family protein [Gardnerella
           vaginalis ATCC 14018]
 gi|311114100|ref|YP_003985321.1| hypothetical protein HMPREF0421_20214 [Gardnerella vaginalis ATCC
           14019]
 gi|310945594|gb|ADP38298.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
          Length = 223

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 11/166 (6%)

Query: 74  LDSIVSSDWPFD--LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            D ++   +      ++ +    +     ++        P+       +           
Sbjct: 53  PDVLLIDMYMSGVSGIKILYELRRRYSLPIII--AITSFPIND---YALKASTAGAQGIV 107

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                   I   L  +           + ++       A          G+   LT  E 
Sbjct: 108 GKNH-PETICAMLSSIANG--TFKPQIIGDLHFDDTTTAFQRLQNKPKNGRLA-LTNHET 163

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           E +   S+G T+ +IA  L +   TV   +  + +K     RS  I
Sbjct: 164 EIIKLCSKGMTNAQIAKRLFVETCTVETILRRVFKKLNVTNRSQLI 209


>gi|206563900|ref|YP_002234663.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
 gi|198039940|emb|CAR55918.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia
           J2315]
          Length = 287

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 59/262 (22%), Gaps = 30/262 (11%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
           +D +R         +  +   +     T      + +L    G S F     +  +E+  
Sbjct: 26  DDVKRGDVAQPHAPKLGVADTLAHAQSTAERNRIVTSLLHLTGFSTFAYFALEFARERVE 85

Query: 75  DSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI------------- 120
              +   + P                           P+   L +               
Sbjct: 86  SLYLHEAFTPATYRGDYVRHNHHDVDPRTLGARVCNMPIVWDLQQLRREHRERDDDSCVS 145

Query: 121 ----------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRDRLWEIGLLAA 167
                         GM +                M           I    + +   +  
Sbjct: 146 PAALDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITPATIEQALSIGL 205

Query: 168 YQANMFKS---YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASI 224
                                LT  E E L  I+EG +  EI   L  S + V+ ++  +
Sbjct: 206 SVHKFASPQLISTSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTSAHNVDYHLRKL 265

Query: 225 MRKTATKTRSGAIAYAVRNNIV 246
            ++     R        +  ++
Sbjct: 266 RKRFGVANRIQLTYLTSKLELI 287


>gi|170726233|ref|YP_001760259.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169811580|gb|ACA86164.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC
           51908]
          Length = 210

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 108 LFCPVFHTLPENITPPAGMD----NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIG 163
               VF   P  I     +              +  I  GL  +     +I  +      
Sbjct: 76  SARVVFLHFPRQIDARFLIHPTVTAGVFFCDAALDAIGHGLGNILRGQSVIPAE------ 129

Query: 164 LLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223
                 +   +           LT RE E L  +  G T+ +IA  L +S +T+  ++  
Sbjct: 130 -----LSEQKQDNQSQVEGSESLTIREREVLQALLSGSTNVDIANQLFVSESTIKTHLYR 184

Query: 224 IMRKTATKTRSGAIAYAVRN 243
             RK    +R  AIA+A  +
Sbjct: 185 AFRKIGVSSRGQAIAWAQTH 204


>gi|255523094|ref|ZP_05390066.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|255513209|gb|EET89477.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 242

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           LT RE E   +I  G ++ EI   L IS NTV N++ +I +K   K +   I
Sbjct: 184 LTNREKEIAGYICMGLSNKEIGEKLFISANTVKNHVYNIYKKVNVKNKVELI 235


>gi|148273924|ref|YP_001223485.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831854|emb|CAN02824.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 206

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 21/223 (9%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            +    D       L   +     +  + E    A    L   +      +D        
Sbjct: 3   RIVIADDHPVVRAGLHAVLDAAADIDVIGEAATPAEAVALAASEDPDLVLMDLQF----- 57

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
                        +       P  L    + +  + ++      + Y       A +   
Sbjct: 58  --GQERTGADATRQIRAAEAAPYVLILTNYDSDGDILSAVEAGASGYLLKDAPPAELLAA 115

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +         +       +                       L+ RE+E L  +++G ++
Sbjct: 116 VRAAAAGESALAPAVASRL-------------LARMRAPRVSLSSREIEVLRLVADGASN 162

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            ++A  L I+  TV +++  +  K    +R+GA+A A    ++
Sbjct: 163 TDVAARLHITDATVKSHLVHVFSKLGVSSRTGAVAAARELGVL 205


>gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 92

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 40/61 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ +
Sbjct: 14  MGLSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 73

Query: 244 N 244
            
Sbjct: 74  G 74


>gi|257487148|ref|ZP_05641189.1| LuxR family DNA-binding response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 220

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
            + +++  +       +  +  + +L   +            +                 
Sbjct: 8   PLRVIVADDHPIFLIGLRVVLEQDNLATVVAEACNPDELLQVLAR--------------- 52

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYY-NVLQRPTELFCPVFHTLPENITPPAG 125
                   D ++  +   D +R +    +D     V+   T     +F ++ +       
Sbjct: 53  HPCDVLVTDFMMPVELQNDGLRLVQRIHRDFPALPVIVVTTLSNAGLFQSMLDLN----- 107

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                 S       +   +  +      +       +     Y  +     +       +
Sbjct: 108 -VRGLLSKASLAGELPAAIRGVQRGEFFVADSVRRVLREARQYGPDALLPAE-------K 159

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE+E L  +S G T  +IA  L  S+ TV+    + MRK      +    Y   + +
Sbjct: 160 LSPRELEVLRLLSAGHTVGQIAAQLNRSKQTVSAQKVAAMRKLGLANDAALFIYLQESGM 219


>gi|207742850|ref|YP_002259242.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
 gi|206594244|emb|CAQ61171.1| hypothetical protein RSIPO_01032 [Ralstonia solanacearum IPO1609]
          Length = 252

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 24/193 (12%)

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D IV+ D+P + +  +          +++R      PV+    +   P A +D 
Sbjct: 48  AAGVLMDHIVAVDFPIEYLAAIQNVAGGIDTPLMRRWFATRNPVY---FDAAAPVAEIDR 104

Query: 129 RYCSLTFDVA----------------RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANM 172
            + +                              L       L   L ++  +       
Sbjct: 105 GWLAKFIAYDLRNAVADGVYDEGHCIGTYFSFHRLVSVNEPFLASVLRDLTPVLHRTLMR 164

Query: 173 FKSYDVHW-----GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227
             +               L+ RE +   WI +GK++ EIA++  IS NTV  ++  IM K
Sbjct: 165 AVADTEKTWHNALRVMSLLSERERQVAAWIGKGKSNAEIALLASISENTVKQHLKHIMDK 224

Query: 228 TATKTRSGAIAYA 240
           T    R G    A
Sbjct: 225 TGCANRVGVAVLA 237


>gi|152981398|ref|YP_001354111.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281475|gb|ABR89885.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 226

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 59/214 (27%), Gaps = 32/214 (14%)

Query: 34  ARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW---------DLFQEQKLDSIVSSDWPF 84
           A +  +D   S+   +  L +  G                  +      LD  +      
Sbjct: 13  AVIRIVDDDPSFRRALQRLLQTTGYRVLDYSSVGDMLLSGIGNESGCIILDINMPGPSGL 72

Query: 85  DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGL 144
           DL   +                 +F     T+ ++I         +     D   +    
Sbjct: 73  DLQEMLVADAHP--------LPIIFITGEATVSDSIRAMKAGAADFFCKPLDSQAL---- 120

Query: 145 MLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSD 204
            L      +       +            K       +   LT RE E L  ++ G  + 
Sbjct: 121 -LCTLDKTLKDAACKRK----------KSKELCDLEARYATLTSREKEVLAMVTRGALNK 169

Query: 205 EIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +I+  L ++  TV  + A +M K   KT +  + 
Sbjct: 170 QISAKLDVAERTVKAHRAKVMEKMEVKTLAELVH 203


>gi|119897667|ref|YP_932880.1| transcriptional regulator [Azoarcus sp. BH72]
 gi|119670080|emb|CAL93993.1| probable transcriptional regulatory protein [Azoarcus sp. BH72]
          Length = 212

 Score = 85.3 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 61/224 (27%), Gaps = 34/224 (15%)

Query: 23  VSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL---------FQEQK 73
           +S LP   D    +  +D   +    +  + E  G         +               
Sbjct: 1   MSVLPVAPD--QEIFIVDDDDALRDSLVWMLESSGYKVVAFDSAEAFLHAWHEGLAGCLV 58

Query: 74  LDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSL 133
           LD  +      +L   +                 +F      +P  +         +   
Sbjct: 59  LDVRMPGMSGLELFEELGRRRCT--------LPVIFITGHGDVPMAVAALKKGAADFIEK 110

Query: 134 TFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
            F    +   +     +                    +  +       +   LT RE E 
Sbjct: 111 PFADREMLALIEHCLQQE---------------RASRDKRRQEADTARRLEHLTQREREV 155

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           L  I  GK + +IA +LGIS  TV  + A +M K    + +  +
Sbjct: 156 LDLIIAGKLNKQIADVLGISIKTVEVHRARVMEKMGAHSLAELV 199


>gi|332883601|gb|EGK03882.1| hypothetical protein HMPREF9456_01423 [Dysgonomonas mossii DSM
           22836]
          Length = 292

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               K   L+ RE++ L  I+ G  + E+A  L IS NTV ++  +I  K   KT SG I
Sbjct: 217 SRDNKRQPLSERELDVLRLIALGLLNKEVADKLNISLNTVLSHRKNITAKLGIKTVSGLI 276

Query: 238 AYAVRNNIV 246
            Y + +  +
Sbjct: 277 FYCITHGYI 285


>gi|319648196|ref|ZP_08002413.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
 gi|317389831|gb|EFV70641.1| hypothetical protein HMPREF1012_03452 [Bacillus sp. BT1B_CT2]
          Length = 213

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 122 PPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWG 181
                   +   ++  + I   ++L      +     L ++ L            D    
Sbjct: 97  LIEAGVKGFIDKSYTDSMIASSILLCLKGDVLFPDGLLQKLRL------------DSDLS 144

Query: 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
            D  LT  E++ L  ++ GKT+ EIA  L +S   V  +++ I +K    +R  A+    
Sbjct: 145 VDEHLTDTELDILQKVASGKTNKEIAADLQMSTRNVEYHLSKIYKKLKVTSRYCAVKKGT 204

Query: 242 RNNIV 246
             N++
Sbjct: 205 MLNLI 209


>gi|308445190|gb|ADO32764.1| putative two-component response regulator [Streptomyces
           vietnamensis]
          Length = 202

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 57/229 (24%), Gaps = 29/229 (12%)

Query: 18  QRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI 77
            R      +      L  ++ L+  +    ++       G                +D  
Sbjct: 2   IRILLAEDMGMVRGALVALLGLEDDLEVVAQVER-----GDRILPTALEHRPDVAIIDIG 56

Query: 78  VSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDV 137
           +           +A          L     L                     +       
Sbjct: 57  LPGIDGLTAAALLAEE--------LPSCRTLILTSLSRPGVLRRALDAKVAGFLPKDASP 108

Query: 138 ARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197
             +   +  +    R I                          G +  LT RE+E L   
Sbjct: 109 QDLAEAIRRIAAGHRAIDLQLA----------------LAAWDGAESPLTKRELEVLRLT 152

Query: 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + G  + EIA    +S  TV NY+ S++ K   + R  A+  A  +  +
Sbjct: 153 AAGDEAPEIAARPHLSTGTVRNYLTSVVTKLNARNRVDAVRIAHESGWL 201


>gi|288926651|ref|ZP_06420565.1| transcriptional regulator [Prevotella buccae D17]
 gi|288336561|gb|EFC74933.1| transcriptional regulator [Prevotella buccae D17]
          Length = 213

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                   +  IR G+       R I R     +                   +  +LT 
Sbjct: 99  GILLKESSLEEIREGIECAIRGERFICRRMTEML----------LAPRQNEEEERVKLTK 148

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            E E L  I+ G T+ EIA     S +TVN +  +I RK    T   A  YA+R  +V
Sbjct: 149 TETEVLKEIALGFTTREIAERRFSSFHTVNTHRKNIFRKLGVNTVHEATKYALRAGLV 206


>gi|285017530|ref|YP_003375241.1| two-component system regulatory protein, luxr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472748|emb|CBA15253.1| putative two-component system regulatory protein, luxr family
           [Xanthomonas albilineans]
          Length = 212

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 68/236 (28%), Gaps = 35/236 (14%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            I++  +     + V H+  +                        + V A+    +   L
Sbjct: 5   TILVADDHPLFRAAVLHVLRQ-------------------ALPHAQVVEAASAANLDAAL 45

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                +D ++            AL         +                          
Sbjct: 46  AAHADVDLVLLDLAMPGARGFSALLHVRGERPDVPVVVISS---NDHPRVIRRAQQFGAA 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
            +   +     I + + ++F  G       +      A   A           +  +LT 
Sbjct: 103 GFIPKSSPAETIGVAVAVVFDGGTWFPPLTVARSQADAQLAA-----------RLAQLTP 151

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI--AYAVR 242
           ++   L  +++G  + +IA  LG++ NTV  ++  I++K    +R+ A     A+ 
Sbjct: 152 QQFRVLLCLADGLLNKQIAYALGLAENTVKVHVTGILKKLECHSRTQAALLVKALE 207


>gi|163847487|ref|YP_001635531.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525337|ref|YP_002569808.1| LuxR family two component transcriptional regulator [Chloroflexus
           sp. Y-400-fl]
 gi|163668776|gb|ABY35142.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449216|gb|ACM53482.1| two component transcriptional regulator, LuxR family [Chloroflexus
           sp. Y-400-fl]
          Length = 357

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 18/208 (8%)

Query: 37  IPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEK 95
             L   ++       + E   G     ++         +D  +    P   +R +  +  
Sbjct: 17  AGLRSALASLPEFEVVGEAADGPQLLAVLAQHQPDLLVVDVAMPDFEPIATIRQIHAT-- 74

Query: 96  DKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL 155
              Y  ++         +      +   A   N Y      ++ +++ +  +   G  I 
Sbjct: 75  ---YPAMKILVVS---AYDDQSYVVGLLAAGVNGYHLKDQPLSDLQLAVQRIMAGGNWIS 128

Query: 156 RDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRN 215
              L  I   A                   LT R+ E L  I++G  +  +A  + +S  
Sbjct: 129 SPLLSRIIQAAPQI---------TRSPHITLTRRQRELLRLIAQGYDNRRMAQEMDLSVK 179

Query: 216 TVNNYIASIMRKTATKTRSGAIAYAVRN 243
           T+ N++ ++ R     +R  A  +A+ +
Sbjct: 180 TIENHLTALYRAIHVSSRLEAYQFAIHH 207


>gi|266631096|emb|CBH32096.1| putative two-component response regulator [Streptomyces albaduncus]
          Length = 201

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 59/239 (24%), Gaps = 39/239 (16%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           +N++L  E E        L  +   +  +  L  +                         
Sbjct: 2   INVLLAEEREMTRGAFLALLAQESDIKTVADLGRSKDI--------------------LP 41

Query: 68  LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMD 127
             +  + D  V            ++               L                   
Sbjct: 42  AIRLHRPDVAVIDMDMLTPDGLSSIQSLFDELP---ETRTLILTNHGRPGVVRQALNIGV 98

Query: 128 NRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELT 187
             +        ++   +  L    R+I  D                            LT
Sbjct: 99  AGFLHKDSPPEKLVSAIRDLAAGRRVIDADLA----------------MSAWQTPLPPLT 142

Query: 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            RE+E L   + G+    IA  L +S  TV NY+ ++  K   +TR  A+  A     +
Sbjct: 143 DRELEVLRLTATGEAVPAIATRLHLSPGTVRNYLTTVESKLNARTRVDAVRIATDAGWL 201


>gi|239926633|ref|ZP_04683586.1| two-component system, regulatory protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291434947|ref|ZP_06574337.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
 gi|291337842|gb|EFE64798.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
          Length = 257

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 70/244 (28%), Gaps = 32/244 (13%)

Query: 15  EDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL 74
            ++     +       +           +     + AL+E +   H  L RWD    ++ 
Sbjct: 3   AEQSTADILDAAIHVREAARSATSGATGIDLV--LAALSEVMEYDHASLARWDPL--RRR 58

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL------------PENITP 122
            + ++  +P D    +          V                            + +  
Sbjct: 59  HTTLAGSYPDDATAYIETRLHH--DPVFPVLRSPARGGLWLRDVPGQLLAASPGFQEVLC 116

Query: 123 PAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMF--------- 173
           P G+++      F      +G++ +  +      D    +  L                 
Sbjct: 117 PLGIEDGVAQCLFAADGRYVGMLNVSTRRPRRTPDPARAVLTLLTEALAAAVDTRAGPPP 176

Query: 174 -----KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228
                        +   L+ RE++ L  ++ G+T+ EIA  L I+  TV  ++  I+ K 
Sbjct: 177 EEVAAADPTADARRPGGLSPRELQVLAELTAGRTNREIAERLYITPRTVGTHVEHILAKL 236

Query: 229 ATKT 232
               
Sbjct: 237 DLPN 240


>gi|254182880|ref|ZP_04889473.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1655]
 gi|254299672|ref|ZP_04967121.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           406e]
 gi|157809673|gb|EDO86843.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           406e]
 gi|184213414|gb|EDU10457.1| capsular synthesis regulator component B [Burkholderia pseudomallei
           1655]
          Length = 236

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 13/223 (5%)

Query: 25  HLPTRSDLLARMIPLDCTVSWTMRMYALTEYV-GASHFLLVRWDLFQEQKLDSIVSSDWP 83
            L    D  A +  ++  +S +  +  +           L+  +       D  +     
Sbjct: 10  DLIVADDHPALVAGIEHALSRSNAIRVVGTASNSTELVDLLTCERCDILITDYAMPGGSH 69

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
            D +  ++   +            +            +          +    +  +   
Sbjct: 70  GDGLGLLSFLRRHHPD-----LKIIVFTAIDNPALIASMARLGARAIVNKMDHIDNLIAT 124

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           +  ++     +          + A+ ++           + +L+ RE+E +     G + 
Sbjct: 125 VQAVYAGASCLP-------AGIGAFASSRLPVDGEAPEIERQLSARELEIVRLYVSGLSV 177

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +EIA  L  S+  V+    + MRK   +  +G   YA    ++
Sbjct: 178 NEIAAYLHRSKQAVSTQKMNAMRKLGIERDAGLFRYAYETGLM 220


>gi|111017210|ref|YP_700182.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110816740|gb|ABG92024.1| probable transcriptional regulator, LuxR family protein
           [Rhodococcus jostii RHA1]
          Length = 287

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 7/155 (4%)

Query: 99  YNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158
             V  R       +   L         +     S   D    R   +        +    
Sbjct: 132 DRVTDRVMRGAARLARELDIRDEVDRRLAMLAASSGVDRGVPRDVRVSEAITESYLALRD 191

Query: 159 LWE------IGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILG 211
           + +      +G          +            L+ RE + L  ++ G  + EIA  L 
Sbjct: 192 IADRLGDDGLGAEVQAVEQKLRRLTAPGDPSTVTLSRRESDVLAHVALGCRNAEIADRLS 251

Query: 212 ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           +S  TV +Y+ ++M K   ++R  A+  A R  ++
Sbjct: 252 LSVETVKSYMRNLMGKLEVRSRQEAVVEARRQGLL 286


>gi|71906325|ref|YP_283912.1| two component LuxR family transcriptional regulator [Dechloromonas
           aromatica RCB]
 gi|71845946|gb|AAZ45442.1| two component transcriptional regulator, LuxR family [Dechloromonas
           aromatica RCB]
          Length = 203

 Score = 85.3 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 61/225 (27%), Gaps = 32/225 (14%)

Query: 16  DEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR-WDLFQEQKL 74
            +     V    +  D LA +  +          Y    + GA  FL     D      +
Sbjct: 5   HDLTVFIVDDDASVRDALALLFSVRG--------YRTAIFSGAPDFLKAWQADWTGCLLI 56

Query: 75  DSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLT 134
           D  +       L   +          V+             +             +    
Sbjct: 57  DIRMPVMDGLSLQERLIEMG--CTLPVV------VITGHGDVESARRAFKSNAIDFLEKP 108

Query: 135 FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194
            D  ++   +   F    ++                +   + +       +LT RE E +
Sbjct: 109 IDHDKMLEAIEQAFNSQSLM---------------QDRKSASEKANYLLGQLTPREQEVM 153

Query: 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             +  G  + EIA  LGIS  TV  + A +M K    + +  +  
Sbjct: 154 NLVVGGYHNREIAEKLGISVRTVEVHKAHVMSKLDVDSVADLVRL 198


>gi|260642682|ref|ZP_05859490.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
 gi|260621023|gb|EEX43894.1| transcriptional regulator, LuxR family domain protein [Bacteroides
           finegoldii DSM 17565]
          Length = 200

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 34/80 (42%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            Y                 L+ RE+E L  I++G  + EIA  L IS  TV  +  +I  
Sbjct: 116 GYPVKDMPPMIPPAHHQELLSAREIEVLVLITKGLINKEIADKLNISLTTVITHRKNITE 175

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV N  +
Sbjct: 176 KLGIKSVSGLTIYAVMNGYI 195


>gi|91781776|ref|YP_556982.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91685730|gb|ABE28930.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 225

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 56/240 (23%), Gaps = 29/240 (12%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
           Q++ +++  + +     V  +      +  +     T      + A              
Sbjct: 14  QKIRVIVADDHDCVRVGVKQMLQSVPHIEFVGEAADTHGLAELLDACA------------ 61

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                    D  +                          P  +   +             
Sbjct: 62  ---CDVVVSDITMPGIHGGSNAVPFLRRLLRGR----PHPCVVVLTMICHAHMLTGLLHI 114

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
                      V  +   +   F     +       I +          +      +   
Sbjct: 115 GVGGIVDKRETVTALIDAIEAAFSGHVYLSAHARAAIEM----------ADAPPQLRAGM 164

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           L+ RE E      +G    +IA  L  S  T++    S MRK   +T +  I YA +  +
Sbjct: 165 LSAREWEIFQLYVQGLAVHQIAARLQRSGKTISTQKRSAMRKLGLETEADLIDYARQIGL 224


>gi|84502163|ref|ZP_01000311.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
 gi|84389523|gb|EAQ02242.1| DNA-binding response regulator, LuxR family protein [Oceanicola
           batsensis HTCC2597]
          Length = 194

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 50/178 (28%), Gaps = 20/178 (11%)

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           + F    LD  +      + ++ +   E ++   V                         
Sbjct: 35  EPFDLVLLDYSMPGMKGLEGLKAV--LEINEGRPVGLLSGTAT------RLIAEQAMEMG 86

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +   T     +   +  +                  A       K        + +L
Sbjct: 87  ATGFLPKTLPARSLINAVRFMAAGEIY------------APVGFISGKEDTEETDFERDL 134

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
           + RE + L  +   +++ EIA  L +   T+  ++ ++ RK   + R+ A   A    
Sbjct: 135 SQRERQVLRGLMCARSNKEIARDLELQEVTIKLHVKTLCRKLDARNRTDAAMIARDAG 192


>gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family
           [Bradyrhizobium sp. BTAi1]
          Length = 140

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKD---------FELTGREVECLTWISE 199
              R+   D   ++ ++  +  +     +     D         F+LT RE + L  ++E
Sbjct: 32  AGLRLAAPDETADVAIVTPHGRDKRSLDEGSLDHDKTDGRAIDGFQLTARERDVLALMAE 91

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           G ++ EIA  LGIS +T   ++ S++ K     R+ A+A+A R  I+
Sbjct: 92  GCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARRGII 138


>gi|332767456|gb|EGJ97650.1| narL transcriptional dual regulator [Shigella flexneri 2930-71]
          Length = 200

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G     L          LD  +      + +  +          V          V +  
Sbjct: 25  GEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF--------SVSNHE 76

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
            + +T      + Y     +   +   L        ++       +           ++ 
Sbjct: 77  EDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLA-------ASLRAN 129

Query: 177 DVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                +D  +LT RE + L  I++G  +  IA  L I+ +TV  ++  +++K   K+R  
Sbjct: 130 RATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVE 189

Query: 236 AIAYAVRNNI 245
           A  +  +  I
Sbjct: 190 AAVWVHQERI 199


>gi|29830115|ref|NP_824749.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607225|dbj|BAC71284.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 259

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 3/232 (1%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   + ++ +++  +       ++        +          +      A+ E      
Sbjct: 1   MGVSVLRIRVLVVDDHRIFAESLAAALAAEPDVDVSAAGSGPAALRALERAVAEGRRFDV 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            L+              VS     +      +S      +       +            
Sbjct: 61  LLVDADLGGNVPGTRPAVSVRDGNEEGLVDGISLVAGVRSGQPSVRTVVLAEKDDPRRAA 120

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + + +    ++R+   +  +      +    L  +              +   
Sbjct: 121 LALQAGASGWVAKDCSLSRLLTVIRGVLRDETHLPPALLTGVLRELTAARKHRTESERLV 180

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                LT RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 181 ES---LTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 229


>gi|56476751|ref|YP_158340.1| two-component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312794|emb|CAI07439.1| Two-component response regulator [Aromatoleum aromaticum EbN1]
          Length = 208

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 69/226 (30%), Gaps = 39/226 (17%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           QV + L  ++   T  +S L    ++ +R               A           L   
Sbjct: 5   QVTVYLVDDEPNVTRALSWLLDSINVPSR---------------AFGSAYDFIA-QLDLS 48

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
                  LD  +      +L++ +  +         +    +F      +P  +      
Sbjct: 49  GGPACLVLDLRMPEIGGLELMQKLNETG--------RSLPVIFLSAHGDIPAAVRAIQLG 100

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
              +    F+       +                    +A  +  + +S          L
Sbjct: 101 AMDFLQKPFNPQSFIDAINKAM---------------QIARERFELLQSKLTTERLLQRL 145

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
           + RE E L  +  G TS +IA +L IS  TV+ + A+++RK    +
Sbjct: 146 STREREVLDHLLAGSTSKDIARLLDISYKTVDVHRANVLRKLGVTS 191


>gi|315608389|ref|ZP_07883377.1| transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315249849|gb|EFU29850.1| transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 318

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            + +   +  L+ RE + +  + +G T+ EIA  L IS NTV  +  +I +K    + +G
Sbjct: 241 INQNPNAEDMLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAG 300

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 301 LTIYAIVNNLV 311


>gi|288926112|ref|ZP_06420040.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
 gi|288337152|gb|EFC75510.1| transcriptional regulator, LuxR family domain protein [Prevotella
           buccae D17]
          Length = 313

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
            + +   +  L+ RE + +  + +G T+ EIA  L IS NTV  +  +I +K    + +G
Sbjct: 236 INQNPNAEDMLSDREKDVIVSLVQGMTNKEIADHLCISINTVITHRRNIAKKLQIHSPAG 295

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 296 LTIYAIVNNLV 306


>gi|153802230|ref|ZP_01956816.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
 gi|124122254|gb|EAY40997.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3]
          Length = 214

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%)

Query: 172 MFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231
            +           +LT RE++ L  +  G ++ +IA  L IS  TV +++  I +K   K
Sbjct: 141 RYAFQSHQAQASVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVK 200

Query: 232 TRSGAIAY 239
            R  AIA+
Sbjct: 201 NRVKAIAW 208


>gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT
           9515]
 gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus
           str. MIT 9515]
          Length = 92

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 40/61 (65%)

Query: 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
             L+ RE+E +  +++G T+ EIAV L IS+ TV+N+++++  KT +K R   + +A+ +
Sbjct: 14  MGLSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDH 73

Query: 244 N 244
            
Sbjct: 74  G 74


>gi|38639353|gb|AAR25818.1| putative regulatory protein [Burkholderia cepacia]
          Length = 301

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 59/272 (21%), Gaps = 39/272 (14%)

Query: 14  REDEQRTSFVSHLPTRS---------DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           RE   +  +   +              +   +     T   +  + +L    G S F   
Sbjct: 30  RERPVQVVWCDDVKRGDVTQPHAPKLGVADTLAHAQSTAERSRIVASLLHLTGFSTFAYF 89

Query: 65  RWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI--- 120
             +   E+     +   + P                           P+   L +     
Sbjct: 90  ALEFAHERVESLYLHEAFTPSTYRGDYVRHHHHDVDPRTLGARVCNMPIVWDLQQLRREH 149

Query: 121 --------------------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILRD 157
                                   GM +                M           I   
Sbjct: 150 RERDAGPRASPAALDGFLQTMQDDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITPA 209

Query: 158 RLWEIGLLAAYQANMFKS---YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISR 214
            + +   +                       LT  E E L  I+EG +  EI   L  S 
Sbjct: 210 TIEQALSIGLSVHKFASPQLISTSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTSA 269

Query: 215 NTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           + V+ ++  + ++     R        +  ++
Sbjct: 270 HNVDYHLRKLRKRFGVANRIQLTYLTSKLELI 301


>gi|296187029|ref|ZP_06855429.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
 gi|296048467|gb|EFG87901.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans
           P7]
          Length = 219

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         Y     +   I   +  ++   +             + +  ++       
Sbjct: 94  VKALKSGVQGYVLGKSNEEEILYAIERVYEGKKYFD----------SYFVDSIINKDTDL 143

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT RE E L  +++G ++ +I+    I+ NTV  +I  I+ K   K R+ A  Y
Sbjct: 144 PNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHINHILNKLNIKDRTEAALY 203


>gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510]
          Length = 310

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 61/224 (27%), Gaps = 22/224 (9%)

Query: 20  TSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79
             +V+      +L+AR+              A  +  G                  +   
Sbjct: 102 VDYVTKPIVVDELIARIRVHLTNARVAYAARAALDATGRFLLATDGEGRLLWCTPQAERL 161

Query: 80  SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG-MDNRYCSLTFDVA 138
                     +           L R      P     P  +  P G    R        A
Sbjct: 162 LGGLPPGSDGVHPDVASSLAAGLVRLRRPSPPGGAMEPFALELPDGEGVRRLEFTYLSPA 221

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
                L  L           L +                        LT RE E L WI+
Sbjct: 222 GPDEYLFRLSEPTAGRQEAILRDAL---------------------GLTAREAEVLLWIA 260

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
            GK + +I  ILGIS  TVN ++  +  K   + R+ A A A+R
Sbjct: 261 NGKPNRDIGEILGISPRTVNKHLEQVFAKLGVENRASAAALAIR 304


>gi|261221423|ref|ZP_05935704.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997385|ref|ZP_06109942.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260920007|gb|EEX86660.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551853|gb|EEZ07843.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 254

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 89  AVMIHIGSKRLANPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 148

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 149 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 196

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 197 VHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|255526738|ref|ZP_05393640.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
 gi|255509573|gb|EET85911.1| two component transcriptional regulator, LuxR family [Clostridium
           carboxidivorans P7]
          Length = 215

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVH 179
           +         Y     +   I   +  ++   +             + +  ++       
Sbjct: 90  VKALKSGVQGYVLGKSNEEEILYAIERVYEGKKYFD----------SYFVDSIINKDTDL 139

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
             K   LT RE E L  +++G ++ +I+    I+ NTV  +I  I+ K   K R+ A  Y
Sbjct: 140 PNKLELLTNREREILIEVAKGLSNPKISEKFFITENTVKKHINHILNKLNIKDRTEAALY 199


>gi|229488619|ref|ZP_04382485.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
 gi|229324123|gb|EEN89878.1| response regulator receiver protein [Rhodococcus erythropolis
           SK121]
          Length = 288

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 1/160 (0%)

Query: 88  RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147
             +A +     Y + +               +        NR   ++  +    + L  +
Sbjct: 128 DVIAETMMRSSYTLAREFEIRDEVDRRVAMLDTAAVEHGSNRDAQISEGLTESVLALGEI 187

Query: 148 FPKGRIILRDR-LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEI 206
                 +     +  +       A+   S +        L+ RE E + +++ G  + EI
Sbjct: 188 AANLEDMALSAQVLAVEAKLRALASPKPSANTPVANTVVLSPREREVMGYVALGLRNAEI 247

Query: 207 AVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
           A  L +S  T+  Y+ ++M K   ++R  A+  A R  ++
Sbjct: 248 AERLSLSVETIKTYMRNLMGKLDVRSRHEAVVEARRQGLI 287


>gi|192289923|ref|YP_001990528.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris
           TIE-1]
 gi|192283672|gb|ACF00053.1| two component transcriptional regulator, LuxR family
           [Rhodopseudomonas palustris TIE-1]
          Length = 228

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 65/226 (28%), Gaps = 32/226 (14%)

Query: 28  TRSDLLARMIPLDCTVSWTMRMYALTEYVGA---------SHFLLVRWDLFQEQKLDSIV 78
                 + +  +D        + +L   VG                  D      LD  +
Sbjct: 5   PGGSQQSLICVVDDDEDVRNSISSLLRSVGYRVKTFAGPQDFLASDAVDDASCLILDIRL 64

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
                 +  + +  ++      ++        P+       +         +    FD A
Sbjct: 65  GEADGLEFQQELVAADTPI--PIILISGHGDIPMT------VRAMKAGAVNFLPKPFDEA 116

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +  G+     + R    +   +  L   Y                 LT RE E +  ++
Sbjct: 117 TLLAGVREAVSRARQKRSEAERDHSLRMHY---------------ESLTSREREVMGLVT 161

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244
            G  + +IA  L +S  TV  +  ++MRK   K+ +  +  A    
Sbjct: 162 AGLMNKQIAWQLSLSEITVKIHRGNMMRKMQAKSLAELVRMADALG 207


>gi|226946038|ref|YP_002801111.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter
           vinelandii DJ]
 gi|226720965|gb|ACO80136.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter
           vinelandii DJ]
          Length = 900

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 77/249 (30%), Gaps = 28/249 (11%)

Query: 3   FEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFL 62
              +QV + L R+D         L     +L R+  L                 G  H+ 
Sbjct: 674 LLAEQVRLQLQRDD---------LAGAEHMLRRIEMLKSDEGTIP---------GCRHYA 715

Query: 63  LVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITP 122
            +        +   + ++D    +V       +      L+    +           +  
Sbjct: 716 RIARARLLLAQGLGLAAADCLAGVVAEFEARGQLLEAARLRPLWAIALWQGDERDAAVAT 775

Query: 123 PA-----GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
                  G          D  R  + L+           +    + +L           D
Sbjct: 776 LLPALQLGQRENLLCSLTDAGRALLPLLSRCASAEAGSGELAGYLAILRERLG-----GD 830

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                 F L+ RE + L  ++ G+++ EIA  L IS  TV  ++ ++  K    +R+ A+
Sbjct: 831 DCAEPPFSLSERESQTLRLVAAGQSNKEIARTLDISVETVKWHLKNLYGKLQVTSRTRAM 890

Query: 238 AYAVRNNIV 246
           + A   +++
Sbjct: 891 SRARELSLL 899


>gi|238027862|ref|YP_002912093.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
 gi|237877056|gb|ACR29389.1| Two component transcriptional regulator, LuxR family protein
           [Burkholderia glumae BGR1]
          Length = 218

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 34/239 (14%)

Query: 7   QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRW 66
           ++ + L  +     S ++ L   +  +  +           ++ A               
Sbjct: 10  RIRVALADDHPLVASAMTKLLGETPSITVVHVSHSGAELLQQLRA--------------- 54

Query: 67  DLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGM 126
           D  +    D  + +    D      +S   K +        +     +            
Sbjct: 55  DPCEMIITDLSMGTSDHADQDGLKLVSALRKNWPS---ARVIVYTALNHPALAQRLLYLG 111

Query: 127 DNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFEL 186
            +        +  +   +  +  +G   L  +L                          L
Sbjct: 112 AHAVVCKEDSLEELLAAVDQVAVQGSTYLSKQLR----------------GTAPAPASAL 155

Query: 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           T RE+E L  I  G +  +I+  + ++ +TV+ +  + M K   ++    I Y     +
Sbjct: 156 TPRELEVLRHIGCGLSVVDISRRMFVTVSTVSTHKRNAMDKLNIRSTVELIQYIHAAGL 214


>gi|222081319|ref|YP_002540682.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725998|gb|ACM29087.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 275

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 143 GLMLLFPKGRIILRDR---LWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199
            L  L     II  D    ++++    A+ A               L+ RE   L  +  
Sbjct: 162 ALKQLALGDAIICPDAGSDVFDVHEHDAHMAAAPVQTTRIVNGVRNLSPREKSILKLVMG 221

Query: 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAV 241
           G+++ +IA  L I+ +TV  +I +I+RK   + R+ A  +A+
Sbjct: 222 GESNKQIARRLEITESTVKVHIKTILRKIDVRNRTQAAIWAM 263


>gi|300728290|ref|ZP_07061658.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
 gi|299774525|gb|EFI71149.1| transcriptional regulator, LuxR family domain protein [Prevotella
           bryantii B14]
          Length = 322

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              D  L+ RE + +  + +G T+ EI   L IS NTV  +  +I +K    + +G   Y
Sbjct: 249 PHSDEALSEREKDVIVALVQGMTNKEIGDHLCISINTVITHRRNIAKKLQIHSPAGLTIY 308

Query: 240 AVRNNIV 246
           A+ NN++
Sbjct: 309 AIVNNLI 315


>gi|289645094|ref|ZP_06477121.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
 gi|289505091|gb|EFD26163.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca
           glomerata]
          Length = 421

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 19/237 (8%)

Query: 8   VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWD 67
           V + +        + V     R  +   +     +      M A+    G      V   
Sbjct: 180 VQVGIANPRPLTGALVESEMARRRVPILVRNPQSSSRVHAEMVAVVGTKG-----YVAAP 234

Query: 68  LFQEQKLDSIVSSDWPFDL--VRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
           +    K+  ++ +D   +L  V          +   +    E                  
Sbjct: 235 VVSWGKVVGLLHADRQAELGGVDEFDRDLIGMFAAGVGVAFERNALFRRLRFMRSMFNEH 294

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF- 184
                C++   V  I   +M +           L      A      F+     + +D  
Sbjct: 295 ----VCAVNDLVDDIAEDVMEIGDGSEKPPNRSLG-----AHSSGQNFRETPAAYPEDAL 345

Query: 185 --ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
              LT RE E L  ++ GKT+ +IA  L ++  TV +++  I+RK     R+ A+A 
Sbjct: 346 FASLTPRECEVLRSLASGKTNAQIASSLFVTEGTVKSHVKHILRKLGAANRTDAVAR 402


>gi|149916047|ref|ZP_01904570.1| response regulator receiver [Roseobacter sp. AzwK-3b]
 gi|149810121|gb|EDM69969.1| response regulator receiver [Roseobacter sp. AzwK-3b]
          Length = 123

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +       +   +   +++ +R+    +      +  D   +I     +         
Sbjct: 1   MAVDALDAGASGILTYNSEMSDLRVAARRVMNGDNYVQPDMAMDI-----FAKLRQAEAK 55

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
               +   LT RE + +  + +G T+ +I+V L IS  TV +Y+ S+  K     R   +
Sbjct: 56  RKEAERLRLTARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEVV 115

Query: 238 AYAVRNN 244
             A R  
Sbjct: 116 LEAQRLG 122


>gi|146343750|ref|YP_001208798.1| two-component LuxR family transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146196556|emb|CAL80583.1| putative two-component transcriptional regulator, LuxR family
           [Bradyrhizobium sp. ORS278]
          Length = 211

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 39/235 (16%)

Query: 6   QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVR 65
            +  I +  +D      +S + +                       +    GA+   + R
Sbjct: 7   SRGEIFVVDDDPAVRDTLSMVLSAGGY-----------------EVICFADGAALLAVAR 49

Query: 66  WDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAG 125
                   LD  +      D++R +   +      +     +   P        +     
Sbjct: 50  SRTPSCILLDVHIPGKSGLDILRELHGEDYP--APIFMISGQGDIP------MAVNAIKN 101

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
               +    F  + I   L                        + N             E
Sbjct: 102 GALDFIEKPFRGSEIVARLNEAIG-------------AFARRQKENASPKIGSLHFPGRE 148

Query: 186 -LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
            LT RE E L   + G ++ E    LGIS  T+ ++ A+IM+K   +  +  I  
Sbjct: 149 PLTRREREVLEQFTAGASNKEAGRTLGISPRTIEDHRANIMKKLGARNAADLIRI 203


>gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
 gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena
           CCY9414]
          Length = 87

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
                     L+ RE++ +  ++ G T+ +IAV L IS+ TV+N+I++I+ KT T+ R  
Sbjct: 2   AGGESQTPVSLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVA 61

Query: 236 AIAYAVRNN 244
            + +A++  
Sbjct: 62  LVRWALQWG 70


>gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1]
 gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440]
 gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1]
 gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 82

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 175 SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234
           S          LT RE + L W + GK+S EI  IL    +TVN ++++I+RK    TR 
Sbjct: 8   SQQPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFEVPTRV 67

Query: 235 GAIAYAVRNNIV 246
            A+  A+R  ++
Sbjct: 68  AAVIKAIRYGML 79


>gi|325971988|ref|YP_004248179.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324027226|gb|ADY13985.1| two component transcriptional regulator, LuxR family [Spirochaeta
           sp. Buddy]
          Length = 218

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 18/224 (8%)

Query: 19  RTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIV 78
           R   V   P     LA +I        T     + + +      L+         +D  +
Sbjct: 6   RFLLVDDHPLFRQGLASVIENVRRYKVTAEATTIAQAL-----SLLESITVDVALVDISL 60

Query: 79  SSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVA 138
             +   +LV+ +  +  +    V+         ++  +    +        Y       +
Sbjct: 61  QQENGLELVKTLKSTHPEISSIVV--------SMYDEIIYASSALKAGAKGYVMKQEAAS 112

Query: 139 RIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198
            +   +  +      + +D      +L        +           L+ RE+E L  + 
Sbjct: 113 SLLDAIEHVLKGKIYLSKDMRER--MLDTMLLQDSRE---EIDPVKLLSIREMEVLRLLG 167

Query: 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242
           +G    EIA  L +S  T+N Y  +I  K +         +A++
Sbjct: 168 QGFGVSEIAQNLNLSVKTINVYRDNIRHKLSIGDAGSLRRFAIQ 211


>gi|317501835|ref|ZP_07960020.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896725|gb|EFV18811.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 199

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 34/223 (15%)

Query: 24  SHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83
                  + L++++     +S    +   TE      + ++  D +    LD  +     
Sbjct: 7   DDHRIFGESLSKLLEDWDEISICRYVSNETE-----FWNILSVDEWDIVLLDVNLREQSK 61

Query: 84  FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIG 143
              +  +           ++         +                Y   +     +   
Sbjct: 62  SSGIDLIET--IYSKKPKIKVVMLSS---YDMPVYRQEALKKGAVSYIDKSASADELVKK 116

Query: 144 LMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTS 203
           L  +                           +          LT RE E +  I  GKT 
Sbjct: 117 LTAISKG---------------------HKSTTPPLLDP---LTDREAEIIKAIGTGKTK 152

Query: 204 DEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            EIA  L IS  T+ N+I SI  K   K    A   A+    +
Sbjct: 153 HEIAQELYISERTLYNHIQSIYDKLGAKNAIEAYNKAIALGYI 195


>gi|315924040|ref|ZP_07920267.1| LuxR family DNA-binding response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622666|gb|EFV02620.1| LuxR family DNA-binding response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 198

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           LT RE E    IS+G T+  IA    IS NTV  +I  I  K     R   +  
Sbjct: 136 LTDREWEIAVLISQGLTNTAIAEKTFISLNTVKTHIQHIYEKLNVPNRVSLMRL 189


>gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
 gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM
            44963]
          Length = 1070

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 8/155 (5%)

Query: 91   ALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150
              +        L+       P        +                +   R     L  +
Sbjct: 923  QAARLWGAAATLRSAMSAPIPHIELAYYQLALAQAQTQ--------LGETRFQAAWLEGQ 974

Query: 151  GRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL 210
                 +    E         +  +          +LT REVE L  ++ G T+ +IA  L
Sbjct: 975  HMTPEQVFTQEKQPAVDTPVSQAQPTTSTLTHLDDLTEREVEVLRSLATGLTNAQIAEQL 1034

Query: 211  GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
             IS  TV  +++SI  K    +RS A  YA+ +++
Sbjct: 1035 VISPRTVQAHLSSIYNKIGVSSRSAATRYALEHHL 1069


>gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 99

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 161 EIGLLAAYQANMF--KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVN 218
            + LLA    +       D+    +   + RE E L W +EGKTS EIA+IL IS NTVN
Sbjct: 12  RLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVN 71

Query: 219 NYIASIMRKTATKTRSGAIAYAVRNNIV 246
            +  ++ +K     ++    YA    ++
Sbjct: 72  FHQKNMQKKFNAPNKTQIACYAAATGLI 99


>gi|189461961|ref|ZP_03010746.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
 gi|189431355|gb|EDV00340.1| hypothetical protein BACCOP_02628 [Bacteroides coprocola DSM 17136]
          Length = 195

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 40/80 (50%)

Query: 167 AYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226
            ++            ++ +L+ RE+E LT I++G  + EIA  L IS  TV ++  +I  
Sbjct: 111 GHEVTHHPVSPQEMQQEHDLSPREIEVLTLITKGLINKEIADKLNISLTTVISHRKNITE 170

Query: 227 KTATKTRSGAIAYAVRNNIV 246
           K   K+ SG   YAV +  V
Sbjct: 171 KLGIKSVSGLAIYAVMHGYV 190


>gi|187929125|ref|YP_001899612.1| two component LuxR family transcriptional regulator [Ralstonia
           pickettii 12J]
 gi|187726015|gb|ACD27180.1| two component transcriptional regulator, LuxR family [Ralstonia
           pickettii 12J]
          Length = 219

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 59/183 (32%), Gaps = 13/183 (7%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
           +H+        ++ +  ++V      D      LSE       +     +     H + +
Sbjct: 32  THYTAQIGPACRQAEPSAVVMEWSAQDDDARQRLSELKAVLPEVPVLLTVQAVGRHVVGD 91

Query: 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDV 178
                                +   L  +      +          ++    +  +    
Sbjct: 92  ---ALRFGAAGVVDRQATADVLLEALQRITSGAVYLPP--------ISNLYPDDPRQSPG 140

Query: 179 HWGKD--FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               +    LT R+ E L  ++EGK++ +I  +L ++  T+ N++ ++ R+     R+ A
Sbjct: 141 ESPAELWRRLTPRQHEVLQLLAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVNNRTEA 200

Query: 237 IAY 239
             +
Sbjct: 201 ALW 203


>gi|170737062|ref|YP_001778322.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169819250|gb|ACA93832.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 213

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 61/237 (25%), Gaps = 29/237 (12%)

Query: 9   NIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDL 68
            +VL  +          L    + +  +     +      +  +                
Sbjct: 4   RVVLADDHPIMLLGC-RLLIEQNGMEVVGEARDSSELMSILAHVA--------------- 47

Query: 69  FQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDN 128
                 D  + +    D +  ++   ++           +                    
Sbjct: 48  CDVVITDFSMPNTGRADGLAMLSTLRREHGA-----LPVIVLTNMANAGLLRAMLNEGVL 102

Query: 129 RYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188
                  + + +   +         I      E+  L           ++   +   LT 
Sbjct: 103 GIVEKGAEKSELFAAVRTALRGAIYISARLQRELTKLGL--------TEMESQRAANLTP 154

Query: 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           RE+E L  ++ GK+  E+  +L  +  TV+    S  RK   K+ +    Y V   +
Sbjct: 155 RELEVLRLLASGKSPTEVGQMLHRTIKTVSWAKTSAKRKLGLKSDAELYEYVVNLGL 211


>gi|225159114|ref|ZP_03725421.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224802320|gb|EEG20585.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 212

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 59  SHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPE 118
               L R        LD ++      D V  +  +        ++  T       +TL  
Sbjct: 37  EGLALCRQLQPTVVLLDVVLPDGDGLDFVPAIRKAV-----PEVKVLTLSSHTDEYTLHR 91

Query: 119 NITPPAGMDNRYCSLT-FDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYD 177
             +      N +       +  ++  +  +                 + A      K   
Sbjct: 92  AQSAE---VNGFVDKNGQTLDILQEAITAVMAGQTYACSVVREVRARVRADPLAFAK--- 145

Query: 178 VHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
                   L+ RE+E L     G +++E+A   G+S  T  N+  +IM K    +    I
Sbjct: 146 -------VLSDREMELLCLFGRGWSNEEVAAHAGLSPRTARNHRQNIMTKLGLTSTPQLI 198

Query: 238 AYAVRNN 244
            YA+   
Sbjct: 199 RYALEKG 205


>gi|170743088|ref|YP_001771743.1| two component LuxR family transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168197362|gb|ACA19309.1| two component transcriptional regulator, LuxR family
           [Methylobacterium sp. 4-46]
          Length = 244

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 56/172 (32%), Gaps = 12/172 (6%)

Query: 74  LDSIVSS--DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYC 131
            D ++    +   + +  +                       +   + +   +   + + 
Sbjct: 45  ADLVLIDAFNLSKEALERIKEMRVACRS-----MRFAVMSSSNARSDVLNCLSAGFHGFI 99

Query: 132 SLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREV 191
                 + +   +  L      +       +      + N   S  +   +  +LT R+ 
Sbjct: 100 YKMQPDSELIRAITDLLSGRIYVP----RWLADGDDVKPNTPASIALPSDRL-KLTPRQH 154

Query: 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           E L  +++G ++ EIA  L I+  T   + A+++R    + R+ A   A + 
Sbjct: 155 EILPLLAQGMSNKEIANSLNIAAGTAKIHTAALLRALGARNRTEAAFIAAKL 206


>gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 257

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIA 238
           +LT RE E + W+  GKT+ +IA IL +S  TVN ++  +  K   + R+ A+A
Sbjct: 194 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 247


>gi|37675987|ref|NP_936383.1| putative fimbrial protein Z, transcriptional regulator [Vibrio
           vulnificus YJ016]
 gi|320158130|ref|YP_004190508.1| putative two-component response regulator [Vibrio vulnificus
           MO6-24/O]
 gi|37200527|dbj|BAC96353.1| putative fimbrial protein Z, transcriptional regulator [Vibrio
           vulnificus YJ016]
 gi|319933442|gb|ADV88305.1| putative two-component response regulator [Vibrio vulnificus
           MO6-24/O]
          Length = 199

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 40/235 (17%)

Query: 5   IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLV 64
           I +VN ++  +       +  L    +    +  +    S    M             L+
Sbjct: 2   INKVNCLIFDDHPMVCFAIKTLI---ERFCHVESVSTAGSMKSAM------------ALI 46

Query: 65  RWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPA 124
           + +      LD  +S    FD +R +             +   +F     +   +     
Sbjct: 47  KQEQINLILLDVNLSDCDGFDFLRRIKSHGY--------KGKVIFFSAETSQLFSEIAFR 98

Query: 125 GMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
              + Y   + D + ++  +                   ++  Y    FK          
Sbjct: 99  LGADGYVCKSEDQSILKDAI-----------------DAVINGYTFFKFKPNSAVNQAQP 141

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           EL+ RE   + ++ +GKT+ EIA IL IS  T++ Y   ++ K   +        
Sbjct: 142 ELSDREAAVMNYLLKGKTNREIANILSISDKTISTYKRRLLNKFNVENIVDLAKL 196


>gi|84684966|ref|ZP_01012866.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667301|gb|EAQ13771.1| autoinducer-binding transcriptional regulator, LuxR family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 253

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 67/210 (31%), Gaps = 27/210 (12%)

Query: 56  VGASHFLL----VRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL--- 108
            G    +             + +D++  ++      R         +  + +   E    
Sbjct: 4   FGFDRLIYGYTRFATPNSVGELIDALFLTNHNPTYFRQFIEERMFLHAPLTRWARENESG 63

Query: 109 --FCPVFHTLPENI----------TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI--- 153
                   T PE++               +   Y       +     L  L     +   
Sbjct: 64  YCSWGALWTRPEDLTEKELEVIAFNRAMNVTAGYTVAVPTASDRSHALFALTGAHGLTQQ 123

Query: 154 ----ILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVI 209
               I  +   EI +L         S  +   +  +L+ R++E L W+SEGK++ ++A I
Sbjct: 124 DLDEIWAENGKEIDVLCNIVHLKIASLPIETNRP-KLSKRQLEVLEWVSEGKSNQDVATI 182

Query: 210 LGISRNTVNNYIASIMRKTATKTRSGAIAY 239
           + +S  T+  ++     K    T + AIA 
Sbjct: 183 MDVSVPTIEKHLRLAREKLGVDTTAQAIAK 212


>gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
 gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3]
          Length = 248

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 17/225 (7%)

Query: 39  LDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSI--VSSDWPFDLVRCMALSEKD 96
           +        ++ A+ + VGA +F++ +           +     +W  +     A   + 
Sbjct: 23  VTSRSDLFPKLVAMQKLVGARNFVVTKAAASGFPNKKKLTCELENWGMNAAEQSAQFIRA 82

Query: 97  KYYNVLQRPTELFCPVFH---------TLPENITPPAGMDN------RYCSLTFDVARIR 141
               +L        PV            LP+       ++N                   
Sbjct: 83  VGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALMRRIENDTLPYAGLALPVRLGTIGN 142

Query: 142 IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGK 201
             ++       +     + +         +M    +        L+ RE+ CL    +G+
Sbjct: 143 GYIVFCGSNLVLDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGR 202

Query: 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            S+EIAV LG+S +TVN Y+ S   K  +  R  AIA A+R   +
Sbjct: 203 ISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247


>gi|261218196|ref|ZP_05932477.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320956|ref|ZP_05960153.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260923285|gb|EEX89853.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293646|gb|EEX97142.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 254

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 14/164 (8%)

Query: 76  SIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTF 135
           +++       L       E     +  +    +F        + +         Y   + 
Sbjct: 89  AVMIHIGSKRLADPFFSGEMQAIIDKWRPVPVVFLAEREEWAQVVRAMEIGARGYIPTSV 148

Query: 136 DVARIRIGLMLLFPKGRIILRDRL--WEIGLLAAYQANMFKSYDVHWGKDFELTGREVEC 193
           D       + L    G  +    +       +                    LT REVE 
Sbjct: 149 DTRVCVEAIHLATAGGMYVPASMVTKPAAVDIDEDVLGEL------------LTAREVEV 196

Query: 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237
           +  I  G+++  IA  LG+S  TV  ++ +IM+K     R+   
Sbjct: 197 VHAIRLGRSNKVIAYELGMSEGTVKAHVHNIMKKIGAANRTEVA 240


>gi|255534826|ref|YP_003095197.1| LuxR family transcriptional regulator protein [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341022|gb|ACU07135.1| LuxR family transcriptional regulator protein [Flavobacteriaceae
           bacterium 3519-10]
          Length = 280

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT RE E L+ I+ G +  EIA  + +S +TV ++  +I+ K   +     I+ A+   +
Sbjct: 220 LTQRETEILSLIARGYSGSEIAKNICVSEHTVKSHRRNIIAKMRVRNTKELISKAIEMAV 279

Query: 246 V 246
           +
Sbjct: 280 I 280


>gi|29345566|ref|NP_809069.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571711|ref|ZP_04849117.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298384488|ref|ZP_06994048.1| transcriptional regulator [Bacteroides sp. 1_1_14]
 gi|29337458|gb|AAO75263.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838919|gb|EES67004.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298262767|gb|EFI05631.1| transcriptional regulator [Bacteroides sp. 1_1_14]
          Length = 220

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 5/121 (4%)

Query: 126 MDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFE 185
           M             I   L     K R I       +            +       D  
Sbjct: 98  MAFGVVMKDNSKEEIMSALQCASRKQRYICNHVSNLL-----LSGTASSAASPATVDDHL 152

Query: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245
           LT  E   L  I+ GKT+ EIA    +S +T+N++  +I RK        A  YA+R  I
Sbjct: 153 LTQTEKNILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEATKYAMRAGI 212

Query: 246 V 246
           V
Sbjct: 213 V 213


>gi|332525112|ref|ZP_08401290.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332108399|gb|EGJ09623.1| two component LuxR family transcriptional regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 207

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 68/241 (28%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D       + C  S    +           
Sbjct: 1   MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDY-----RVKCFDSAESFLARF-------- 47

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                         D  +      +L   +   +      ++      F      +P  +
Sbjct: 48  ----DPREVACLIADIRMDGMSGLELQDRLLERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
           T        +    F    +   +  +  +               A    +  +      
Sbjct: 96  TTMKKGAMDFIEKPFKEEELVSLVERMLDQ---------------ARQAFSQHQEQASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
                LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLARLTTRESQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


>gi|328883004|emb|CCA56243.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 270

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 58/232 (25%), Gaps = 5/232 (2%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M   + ++ +++  +       ++        +          +         E      
Sbjct: 1   MGVSVARIRVLVVDDHRVFAESLAAALAAEPDVDVAAAGSGPAALRCLERGAAEGRRFDV 60

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
            L+            +    D P   V  +  S       V      +            
Sbjct: 61  LLVDAELGAGPVGAVARAVPDDPEGAVDGI--SLVAGVRGVQPSVRTVVLAEKDDPHRAA 118

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                  + + +    + R+   +  +      +    L  +              +   
Sbjct: 119 LALQAGASGWVAKDCSLQRLLAVVRGVLRDETHLPPALLTGVLRELTAARKHRTDSERLV 178

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232
                LT RE E L  +  G     +A  L +S +TV  ++ +++ K    +
Sbjct: 179 ES---LTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHS 227


>gi|294335678|gb|ADE62389.1| styrene response regulator [Pseudomonas sp. LQ26]
          Length = 207

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 57/199 (28%), Gaps = 24/199 (12%)

Query: 46  TMRMYALTEYVGAS----HFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNV 101
              +  L    G         L   D  + ++   +V       +       E     + 
Sbjct: 17  REGLRNLLRSAGFEVETFDSALTFLDQRRPEQHGCLVLDMRMPGMTGMELQEELGLISDG 76

Query: 102 LQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161
           +      F      +P  +         +    F+   +   +                E
Sbjct: 77  IPIV---FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALVDAV----------------E 117

Query: 162 IGLLAAYQANMFKSYDVHWGKDF-ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNY 220
            GL         ++      + F  LT RE + L     G  + ++A  LGI+  TV  +
Sbjct: 118 QGLQLDAARRRERATHDELERLFSGLTPREHQVLQLTIRGLMNKQVAGELGIAEVTVKVH 177

Query: 221 IASIMRKTATKTRSGAIAY 239
             +IM+K   ++ +  +  
Sbjct: 178 RHNIMQKLNVRSLANLVHL 196


>gi|222095466|ref|YP_002529526.1| two-component response regulator [Bacillus cereus Q1]
 gi|221239524|gb|ACM12234.1| two-component response regulator [Bacillus cereus Q1]
          Length = 217

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 10/218 (4%)

Query: 33  LARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKL----DSIVSSDWPFDLVR 88
           + +++ +D  ++  M    L E       +L   +  Q        D  +   +  +L  
Sbjct: 1   MIQVLIIDDHLAVGMGTKVLIEQENIQADVLFYSEKLQTHLSNKKYDVYMVDLYMPNLNG 60

Query: 89  CMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148
                +  K          +    F   P              S T     I   +  + 
Sbjct: 61  LEISKKILKEDP---NARIIIYTGFDIEPHFNLLIETGVMGIISKTASQESIINAIESIM 117

Query: 149 PKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAV 208
            K  +I  +   ++ +   Y         V       +  RE+E L++I +G T+  IA 
Sbjct: 118 RKEIVIPYELFKQLRIQERYSHININKNGVVP---ISMNHREIEVLSYIEKGMTNKCIAS 174

Query: 209 ILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            L +S+ ++   I  I  K    +R  A+  A +  I+
Sbjct: 175 TLNLSQRSIEYTITEIFNKLGVYSRVEAVKAAKKIGII 212


>gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens
           DSM 3043]
 gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens
           DSM 3043]
          Length = 238

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%)

Query: 153 IILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGI 212
           ++  D      L+        +     +     LT RE+E +  +  G ++ EIA  L +
Sbjct: 130 LLEGDLWMSRNLMTRLIDFYRRQQLNAYRPVCGLTHRELEIIGLLGTGASNTEIADQLFV 189

Query: 213 SRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
           S +TV +++ +I RK     R  A+ +A +N
Sbjct: 190 SEHTVKSHLYNIFRKIKVHNRIQAMNWARQN 220


>gi|28899484|ref|NP_799089.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094736|ref|ZP_05891637.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308095423|ref|ZP_05905792.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308125607|ref|ZP_05776200.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
 gi|28807720|dbj|BAC60973.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087209|gb|EFO36904.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093073|gb|EFO42768.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           AN-5034]
 gi|308111203|gb|EFO48743.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus
           K5030]
          Length = 214

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAY 239
                +LT RE++ L  +  G ++ ++A  L +S  T+ +++  I +K + K R  AIA+
Sbjct: 148 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207

Query: 240 AVRN 243
           A +N
Sbjct: 208 ADQN 211


>gi|260591671|ref|ZP_05857129.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
 gi|260536471|gb|EEX19088.1| transcriptional regulator, LuxR family domain protein [Prevotella
           veroralis F0319]
          Length = 349

 Score = 85.0 bits (209), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 176 YDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235
              +   +  L+ RE + +  +++G T+ EIA  L IS NTV  +  +I RK    + +G
Sbjct: 272 ITQNPESNEVLSDREKDVIVSVAQGMTNKEIANHLCISTNTVITHRRNIARKLQIHSPAG 331

Query: 236 AIAYAVRNNIV 246
              YA+ NN+V
Sbjct: 332 LTIYAIVNNLV 342


>gi|221370007|ref|YP_002521103.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
 gi|221163059|gb|ACM04030.1| Two component transcriptional regulator, LuxR family [Rhodobacter
           sphaeroides KD131]
          Length = 253

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 6/181 (3%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G  +    R D    +  + ++ S     +      S    +   +     +        
Sbjct: 60  GYGNEAAWRADAPGRETDEVLLFSLGSARIDDEEMRSYLLGFIARVAPRRVVVLGEHDDA 119

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
                        Y   +  +  +   +    P+  ++ R  +  +         M    
Sbjct: 120 ASLFEAIDCGAASYIPSSVGLEELVAAIRFSCPRSVLVPRKSIMALR------HAMVVPG 173

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
               G     T R+++    + +G  +  IA  L +  +TV  +I +IMRK     R+ A
Sbjct: 174 GEDRGLSRFFTDRQLDVARALLQGAANKTIAHELNLCESTVKVHIRNIMRKLKATNRTQA 233

Query: 237 I 237
            
Sbjct: 234 A 234


>gi|170699428|ref|ZP_02890473.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
 gi|170135684|gb|EDT03967.1| transcriptional regulator, LuxR family [Burkholderia ambifaria
           IOP40-10]
          Length = 301

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 63/273 (23%), Gaps = 39/273 (14%)

Query: 13  NREDEQRTSFVSHLPTRS---------DLLARMIPLDCTVSWTMRMYALTEYVGASHFLL 63
           +RE   +  +   L              +   +     T      + +L    G S F  
Sbjct: 29  SRERPVQVVWCDDLKRGDITQPHAPKLGVADTLANAQSTAERNRIVASLLHLTGFSTFAY 88

Query: 64  VRWDLFQEQKLDSIVSSDW-PFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI-- 120
              +  +E+     +   + P                           P+   L +    
Sbjct: 89  FALEFSRERVESLYLHEAFTPNTYRGDYVRHNHHDIDPRTLDARVCNMPIVWDLQQLRRE 148

Query: 121 ---------------------TPPAGMDNRYCSLTFDVARIRIGLMLLFP---KGRIILR 156
                                    GM +                M           I  
Sbjct: 149 HRERDDGPCVTPAALDGFLQTMQEDGMCSGIMYSMAVPGTRLHAFMSFTAPRRTREWITP 208

Query: 157 DRLWEIGLLAAYQANMFKSYDVHWGKD---FELTGREVECLTWISEGKTSDEIAVILGIS 213
             + +   +            +   ++     LT  E E L  I+EG +  EI   L  S
Sbjct: 209 ATIEQALSIGLSVHKFASPQLIATSRERAVNGLTPFEQELLLGIAEGASDKEIGRRLDTS 268

Query: 214 RNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246
            + V+ ++  + ++     R        +  ++
Sbjct: 269 AHNVDYHLRKLRKRFGVANRIQLTYLTSKLELI 301


>gi|156975631|ref|YP_001446538.1| hypothetical protein VIBHAR_03364 [Vibrio harveyi ATCC BAA-1116]
 gi|156527225|gb|ABU72311.1| hypothetical protein VIBHAR_03364 [Vibrio harveyi ATCC BAA-1116]
          Length = 221

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 126 MDNRYCSLTFDVARIR-IGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDF 184
           ++  Y         +    L  +        R  L +                 +    F
Sbjct: 92  LEKGYSGQVCSRLELLPKALSAVSQGDVWFPRPILNKAIYHYQEGGEDSTLTADYLSTKF 151

Query: 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243
            LT RE E    + +G ++ +IA    +S NT+  + ++++ K    +R   +A A ++
Sbjct: 152 LLTKREGEICKLMLQGLSNTQIARQSNVSINTIKTHASNVLHKLNVHSRYELMAMAKKH 210


>gi|104780643|ref|YP_607141.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila
           L48]
 gi|95109630|emb|CAK14331.1| putative DNA-binding response regulator, LuxR family [Pseudomonas
           entomophila L48]
          Length = 208

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 57/190 (30%), Gaps = 16/190 (8%)

Query: 57  GASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTL 116
           G    +L R  +     LD ++      +++  +            +    +      T 
Sbjct: 35  GIDAIVLARERMPDVIILDLLIPGLDGLEVIARIKAMP--------RPAKVVVLTSQLTE 86

Query: 117 PENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSY 176
             ++       + + S T  +  +   +M +           L  +              
Sbjct: 87  NFSLRCMKAGASGFVSKTESLQTLSKAIMAVLSGYTYFPDVALSSVDRRDVQLNEAQALA 146

Query: 177 DVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236
                    LT RE+  L  ++ G ++  I   + +S  T++ Y   ++ K    +    
Sbjct: 147 S--------LTNRELVILQHLARGLSNKAIGEAMLLSNKTISTYKTRLIEKLKVGSVIDM 198

Query: 237 IAYAVRNNIV 246
              A RN ++
Sbjct: 199 ADIARRNGLI 208


>gi|121604681|ref|YP_982010.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120593650|gb|ABM37089.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 208

 Score = 85.0 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 40/241 (16%)

Query: 1   MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASH 60
           M+   ++  + +  +DE     +  L    D   R                      A  
Sbjct: 1   MSLIPKKGTVYVVDDDEGVRDSLQWLLEGKDYRVRC---------FDSAETFLSRYDARE 51

Query: 61  FLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENI 120
                        +D  +      +L   +   +      ++      F      +P  +
Sbjct: 52  VA--------CLIVDIRMGGMTGLELQDRLLERKSPL--PIV------FITGHGDVPMAV 95

Query: 121 TPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHW 180
                    +    F    +   +  +  +               A    N  +      
Sbjct: 96  DTMKKGAMDFIQKPFQEDALVNLVERMLAQ---------------ARDAFNDHQQSASRD 140

Query: 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYA 240
               +LT RE + L  I  G+ + +IA  LGIS  TV  + A+IM K    T +  +  A
Sbjct: 141 ALLAKLTSREAQVLDRIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIA 200

Query: 241 V 241
           +
Sbjct: 201 L 201


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.149    0.386 

Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,172,524,626
Number of Sequences: 14124377
Number of extensions: 122954032
Number of successful extensions: 685804
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 24330
Number of HSP's successfully gapped in prelim test: 28682
Number of HSP's that attempted gapping in prelim test: 637312
Number of HSP's gapped (non-prelim): 62427
length of query: 246
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 111
effective length of database: 2,936,002,735
effective search space: 325896303585
effective search space used: 325896303585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 80 (35.3 bits)